RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17622
(194 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.002
Identities = 15/139 (10%), Positives = 47/139 (33%), Gaps = 32/139 (23%)
Query: 2 KHSNNWAVLVDT-SRFWFNY--RHVANAKHSNNWAVLVDTSRFWFNYRHVANVLSIYRSV 58
K ++ ++ ++++++ H+ N +H + + ++R +
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF---RMVFLDFRFLEQ-------- 505
Query: 59 KRLGIPDSHIILMIADDMACNPRNPRPATV--FNNANQHIDVYGEDVEVDYRGYEVTVEN 116
K + D A N T+ +I D + Y + +
Sbjct: 506 K-----------IRHDSTAWNASGSILNTLQQLKFYKPYI----CDNDPKYERLVNAILD 550
Query: 117 FIRLLTATSVLTDEGSNIL 135
F+ + +++ + +++L
Sbjct: 551 FLPKI-EENLICSKYTDLL 568
Score = 26.7 bits (58), Expect = 7.1
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 19/73 (26%)
Query: 7 WAVLVDTSRFWFNYRHVANAKHSNNWAVLVDTSRFWFN------YRHVANVLSIYR-SVK 59
+ D W N++HV K + ++++S N YR + + LS++ S
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTT----IIESS---LNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 60 RLGIPDSHIILMI 72
IP +L +
Sbjct: 387 ---IPTI--LLSL 394
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.12
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 14/84 (16%)
Query: 60 RLGIPDSHIILMIADDMACNPRNPRPATVFNNAN--QHI-DVYGE-DVEVDYRGYEVTVE 115
G I++ NP T+ + I + Y E G T +
Sbjct: 1656 TYGFSILDIVI----------NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 116 NFIRLLTATSVLTDEGSNILIYLT 139
F + ++ T L+ T
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSAT 1729
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative
alcohol dehedrogenase, structural GENO joint center for
structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A
{Ralstonia eutropha}
Length = 358
Score = 31.8 bits (73), Expect = 0.12
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 52 LSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPAT 87
+++ +G+ + + +A NPRP
Sbjct: 305 HGAPVALRDIGMREEDLDRAADIALASPYWNPRPIE 340
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol
dehydrogenase, structur genomics, joint center for
structural genomics; HET: MSE; 2.07A {Corynebacterium
glutamicum}
Length = 364
Score = 29.9 bits (68), Expect = 0.45
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 52 LSIYRSVKRLGIPDSHIILMIADDM--ACNPRNPRPAT 87
++ + + G S I D NPRP T
Sbjct: 302 VNAPKRLSDYGFEASGIAEA-VDVTLEKVPANNPRPVT 338
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer,
structural genomics,struct proteomics in europe, spine;
2.70A {Klebsiella pneumoniae}
Length = 387
Score = 28.7 bits (65), Expect = 1.3
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 52 LSIYRSVKRLGIPDSHIILMIADDM--ACNPRNPRPATV 88
+ I + ++ LG+ ++ M + NPR
Sbjct: 338 IGIPQHLRDLGVKETDFPYMAEMALKDGNAFSNPRKGNE 376
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens
str}
Length = 353
Score = 28.0 bits (63), Expect = 1.8
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 52 LSIYRSVKRLGIPDSHIILMIADDMACNPR-NPRPAT 87
L S+ LG+ + M A+ NP PRP
Sbjct: 300 LGAPSSLAALGVGADDLDPM-AELATANPYWCPRPIE 335
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A
{Zymomonas mobilis} PDB: 3owo_A*
Length = 383
Score = 27.9 bits (63), Expect = 2.2
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 52 LSIYRSVKRLGIPDSHIILMIADDM--ACNPRNPRPATV 88
+ I ++ LG + L+ + AC NPR
Sbjct: 334 IGIPANLTELGAKKEDVPLLADHALKDACALTNPRQGDQ 372
>2ezv_A Type II restriction enzyme SFII; type IIF restriction endonuclease,
protein/DNA complex, hydrolase/DNA complex; 2.40A
{Synthetic} PDB: 2f03_A*
Length = 269
Score = 27.9 bits (61), Expect = 2.2
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 43 FNYRHVANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPATVFNNANQHIDVYGED 102
F YR + +V YR +K + +L + NP P T F A +H GE
Sbjct: 163 FYYRELKDVEGRYRELKSI------YVLSLPHARLKQRYNPDPDTSFFGAGKHSPARGEV 216
Query: 103 VEV 105
+
Sbjct: 217 ARI 219
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1;
paracaspase, lymphoma, NF-KB signalling, caspase fold,
immun fold, hydrolase-hydrolase inhibitor complex; 1.75A
{Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Length = 390
Score = 27.1 bits (59), Expect = 4.3
Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 17/90 (18%)
Query: 109 GYEVTV------ENFIRLLTATSVLTDEGSNILIYLTGHG-----------GDGFLKFQD 151
++V + +L D+G L+Y GHG D ++
Sbjct: 40 DFKVVSLLDLTEYEMRNAVDEFLLLLDKGVYGLLYYAGHGYENFGNSFMVPVDAPNPYRS 99
Query: 152 SEEVTSQELGDALEQMWQKRRYHEVRACNR 181
+ Q + +++ + C +
Sbjct: 100 ENCLCVQNILKLMQEKETGLNVFLLDMCRK 129
>3r4d_B Spike glycoprotein; immunoglobulin, beta-sandwich, mceacam1A -
immunoglobulin FO spike NTD - galectin-like
beta-sandwich fold; HET: NAG; 3.10A {Murine hepatitis
virus}
Length = 288
Score = 26.3 bits (57), Expect = 7.9
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 16 FWFNYRHVANAKHSNNWAVLVDTSRFWFNYRHVANVLSIYRS 57
FW N+ + V+ F+F++ Y +
Sbjct: 163 FWHTDVKPPICVLKRNFTLNVNADAFYFHFYQHGGTFYAYYA 204
>1xcr_A Hypothetical protein PTD012; structural genomics, zinc-containing
fold, splice variant, A buffer, metal binding protein;
1.70A {Homo sapiens} SCOP: d.290.1.2
Length = 316
Score = 26.2 bits (57), Expect = 8.3
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 89 FNNANQ----HIDVYGEDVEVDYRGYEVTVENFIRL 120
F+ + H D + VE Y GY + E R+
Sbjct: 271 FSRHGEGGHYHYDTTPDIVE--YLGYFLPAEFLYRI 304
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase,
PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB:
3ac0_A*
Length = 845
Score = 26.4 bits (58), Expect = 8.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 98 VYGEDVEVDYRGYE 111
+YGED+ V YR YE
Sbjct: 691 IYGEDIFVGYRYYE 704
>1enf_A Enterotoxin H; beta-barrel, beta-grAsp; HET: SO4; 1.69A
{Staphylococcus aureus} SCOP: b.40.2.2 d.15.6.1 PDB:
2xna_C 1f77_A 2xn9_C 1hxy_D 1ewc_A
Length = 212
Score = 25.8 bits (56), Expect = 9.7
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 93 NQHIDVYGEDVEVDYRGYEVTVENFI-RLLTATSVLTDEGSNILI--YLTGHGGDGFLKF 149
N+++D+YG + + T S + I ++ G + L
Sbjct: 67 NKNVDIYGASFYYKCEKISENISECLYGGTTLNSEKLAQERVIGANVWVDGIQKETELIR 126
Query: 150 QDSEEVTSQEL 160
+ + VT QEL
Sbjct: 127 TNKKNVTLQEL 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.418
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,125,950
Number of extensions: 179892
Number of successful extensions: 549
Number of sequences better than 10.0: 1
Number of HSP's gapped: 548
Number of HSP's successfully gapped: 20
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.6 bits)