RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17622
         (194 letters)



>d1xcra1 d.290.1.2 (A:3-315) Hypothetical protein PTD012 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 313

 Score = 25.9 bits (57), Expect = 3.7
 Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 6/35 (17%)

Query: 89  FNNANQ----HIDVYGEDVEVDYRGYEVTVENFIR 119
           F+   +    H D   + VE  Y GY +  E   R
Sbjct: 268 FSRHGEGGHYHYDTTPDIVE--YLGYFLPAEFLYR 300


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 769,200
Number of extensions: 34142
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 12
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)