Query psy17624
Match_columns 201
No_of_seqs 120 out of 1380
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 18:49:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4389|consensus 100.0 1.1E-34 2.3E-39 238.2 15.7 196 2-198 354-562 (601)
2 cd00312 Esterase_lipase Estera 99.9 1.5E-23 3.4E-28 180.3 15.8 154 20-177 327-491 (493)
3 PF00135 COesterase: Carboxyle 99.9 4.7E-24 1E-28 184.6 11.1 163 22-189 361-535 (535)
4 COG2272 PnbA Carboxylesterase 99.9 4.1E-21 8.9E-26 159.7 12.5 155 27-190 324-486 (491)
5 KOG1516|consensus 98.9 9.8E-09 2.1E-13 89.8 10.6 144 43-193 385-544 (545)
6 PF08006 DUF1700: Protein of u 64.9 10 0.00023 28.2 3.8 30 20-50 1-30 (181)
7 PF08465 Herpes_TK_C: Thymidin 52.6 8.3 0.00018 20.3 1.0 19 182-200 3-21 (33)
8 PF01320 Colicin_Pyocin: Colic 36.0 56 0.0012 21.3 3.1 34 14-48 4-39 (85)
9 cd05023 S-100A11 S-100A11: S-1 33.8 1.1E+02 0.0023 19.9 4.3 55 18-76 26-85 (89)
10 COG4709 Predicted membrane pro 33.4 71 0.0015 24.2 3.7 30 20-50 1-30 (195)
11 PF02845 CUE: CUE domain; Int 27.2 1.1E+02 0.0025 16.5 3.6 27 24-51 3-29 (42)
12 cd05022 S-100A13 S-100A13: S-1 21.7 2.4E+02 0.0051 18.4 4.3 61 12-76 17-80 (89)
13 COG3124 Uncharacterized protei 20.4 78 0.0017 23.4 1.9 22 134-159 15-36 (193)
No 1
>KOG4389|consensus
Probab=100.00 E-value=1.1e-34 Score=238.16 Aligned_cols=196 Identities=42% Similarity=0.836 Sum_probs=174.2
Q ss_pred eeeccccccccccCCCCCCCHHHHHHHHHHHhccCChHHHHHHHHhhhCCCC--CCCchHH-HHHHHHHHhccceeccch
Q psy17624 2 YFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEYTDWE--NVMDEHL-NQKLISDAVGDYFFICPT 78 (201)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~~~~~~~~~~~~~~i~~~Y~~~~--~~~~~~~-~~~~~~~~~~D~~f~~p~ 78 (201)
+|..++++++|.|.+.+.+|+++|.+-++..++..++... ++++-.|.+.. +.+.+.+ .+++..+++||..|+||+
T Consensus 354 yfl~Y~lp~ff~~~n~~~itR~ef~e~~~~~f~~~~~~~r-~a~~~~ytd~~~~~~~~p~~~y~~~~~~~vGDyfFtC~~ 432 (601)
T KOG4389|consen 354 YFLVYGLPGFFDKHNASLITRDEFLEGVRVFFPGVSDLAR-EAIKFHYTDWHVLDPGRPERLYREALGDVVGDYFFTCPV 432 (601)
T ss_pred eEEeecCcccccccccccCCHHHHHHHHHHhcccccHHHH-HHHHHhcCchhhcCccchhhhHHHHHHHhhcceeeecCH
Confidence 6788899999988899999999999999999998877666 88888897652 2333333 379999999999999999
Q ss_pred HHHHHHHHhcCCceEEEEecc------cCCccCcccccchhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHhccccCCCCC
Q psy17624 79 NHFAQTYASRGGKVYYYFFTQ------WGEWMGVMHGDEIEYVFGHPLNRSIEYNARERDLSLRMMQAYARFALVGKPVP 152 (201)
Q Consensus 79 ~~~a~~~~~~~~~vy~Y~f~~------~~~~~Ga~H~~Dl~y~F~~~~~~~~~~~~~d~~ls~~m~~~~~~Fa~~g~P~~ 152 (201)
..+|++++..|+.||+|.|++ +|.|+|+.||.|+-|+||.+......++++|+.+|++|+++|+||||||+|+.
T Consensus 433 ~e~A~~~~~~g~~v~~YyFthrsSa~pWP~WmGVmHGYEIEyvFG~PL~~s~nYt~~E~~ls~rim~~WanFAktG~P~~ 512 (601)
T KOG4389|consen 433 NEFADALAEQGASVYYYYFTHRSSANPWPKWMGVMHGYEIEYVFGIPLNYSRNYTKEEKILSRRIMRYWANFAKTGDPNE 512 (601)
T ss_pred HHHHHHHHHhcCcEEEEEEeccccCCCchhhhcCcccceEEEEecccccccccccHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 999999999999999999999 57999999999999999999887788999999999999999999999999987
Q ss_pred CC---CCCCCcccCCCceEEEccCC-CcCCCCCCccccchHhhhhhccCC
Q psy17624 153 DD---VEWPLYTKDHPYYYIFNAEK-SGTGKGPRARTCSFWNDFYPKLIP 198 (201)
Q Consensus 153 ~~---~~Wp~~~~~~~~~l~i~~~~-~~~~~~~~~~~~~fW~~l~~~~~~ 198 (201)
.+ ++||+|+...+.+|.++... .++..+.+..+|+||++.+|++.+
T Consensus 513 ~~~~~~~WP~yn~~~~~ym~l~t~s~~ri~~~~~~~~C~fW~~~lpk~~~ 562 (601)
T KOG4389|consen 513 RGNPKPQWPPYNKTEQKYMNLDTGSLLRIIRGLRAQECAFWNRFLPKVLE 562 (601)
T ss_pred CCCCccCCCCCCccccEEEEeccCcchhhcccchhhhhhHHHhhhhHHHH
Confidence 54 68999999988999999874 577889999999999999988754
No 2
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.91 E-value=1.5e-23 Score=180.31 Aligned_cols=154 Identities=30% Similarity=0.544 Sum_probs=123.6
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHhhhCCCCCCCchHHHHHHHHHHhccceeccchHHHHHHHHhc-CCceEEEEec
Q psy17624 20 LPREKFLILVNQIFKVKPESEQAAAIIHEYTDWENVMDEHLNQKLISDAVGDYFFICPTNHFAQTYASR-GGKVYYYFFT 98 (201)
Q Consensus 20 ~t~~~~~~~l~~~~~~~~~~~~~~~i~~~Y~~~~~~~~~~~~~~~~~~~~~D~~f~~p~~~~a~~~~~~-~~~vy~Y~f~ 98 (201)
.+.+++...+...+.....+.. ++|+++|+..... .....+.+.+++||..|.||++.+++.+++. +.+||+|+|+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~Y~~~~~~--~~~~~~~~~~l~sD~~f~~P~~~~a~~~~~~~~~~vY~Y~F~ 403 (493)
T cd00312 327 ETNDRWLELLPYLLFYADDALA-DKVLEKYPGDVDD--SVESRKNLSDMLTDLLFKCPARYFLAQHRKAGGSPVYAYVFD 403 (493)
T ss_pred chHHHHHHHHHHHhccchHHHH-HHHHHHccCCCCC--cHHHHHHHHHHhhcccchhHHHHHHHHHHhccCCCeEEEEec
Confidence 4567777777777765444444 9999999865332 3356788999999999999999999888765 7899999999
Q ss_pred cc--------CCccCcccccchhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHhccccCCCCCC--CCCCCCcccCCCceE
Q psy17624 99 QW--------GEWMGVMHGDEIEYVFGHPLNRSIEYNARERDLSLRMMQAYARFALVGKPVPD--DVEWPLYTKDHPYYY 168 (201)
Q Consensus 99 ~~--------~~~~Ga~H~~Dl~y~F~~~~~~~~~~~~~d~~ls~~m~~~~~~Fa~~g~P~~~--~~~Wp~~~~~~~~~l 168 (201)
+. +...||+|++|++|+|+++.... ..+++|++|++.|+++|++|||+||||.. .+.||+|+.+.+.+|
T Consensus 404 ~~~~~~~~~~~~~~Ga~H~~Dl~ylFg~~~~~~-~~~~~d~~ls~~m~~~w~nFaktGnPn~~~~~~~Wp~y~~~~~~~l 482 (493)
T cd00312 404 HRSSLSVGRWPPWLGTVHGDEIFFVFGNPLLKE-GLREEEEKLSRTMMKYWANFAKTGNPNTEGNLVVWPAYTSESEKYL 482 (493)
T ss_pred cCCcCCccccCCCCCcccCCceeeecCCCCCCC-CCCcHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCcceE
Confidence 93 34679999999999999875432 23477899999999999999999999975 478999998888899
Q ss_pred EEccCCCcC
Q psy17624 169 IFNAEKSGT 177 (201)
Q Consensus 169 ~i~~~~~~~ 177 (201)
.|+...+++
T Consensus 483 ~i~~~~~~~ 491 (493)
T cd00312 483 DINIEGTEI 491 (493)
T ss_pred EecCCCCcc
Confidence 999774444
No 3
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=99.91 E-value=4.7e-24 Score=184.61 Aligned_cols=163 Identities=29% Similarity=0.523 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHhccCChHH-HHHHHHhhhCCCCCCCchHHHHHHHHHHhccceeccchHHHHHHHHhcCCceEEEEeccc
Q psy17624 22 REKFLILVNQIFKVKPESE-QAAAIIHEYTDWENVMDEHLNQKLISDAVGDYFFICPTNHFAQTYASRGGKVYYYFFTQW 100 (201)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~-~~~~i~~~Y~~~~~~~~~~~~~~~~~~~~~D~~f~~p~~~~a~~~~~~~~~vy~Y~f~~~ 100 (201)
.+.+...+...+....... +.+++.+.|+..... .......++.+++||..|.||.+.+++..++.+.++|+|+|++.
T Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~Y~~~~~~-~~~~~~~~~~~~~sD~~f~~p~~~~~~~~~~~~~~vY~Y~F~~~ 439 (535)
T PF00135_consen 361 NEDFEDLLPSLLPYYSSDSRIADAIKEFYPDDPDP-NDSDSRDRLAQLLSDIFFTCPARRAANHLASGGSPVYLYRFDYP 439 (535)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSTTST-THHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSCEEEEEEHHS
T ss_pred hhhHHHHHhhhhcccccccccchhhhccccccccc-cchhhhHHHhhccCcceeeeccccccccccccccccceeecccc
Confidence 4557788888887665544 349999999876444 44455699999999999999987777778877889999999994
Q ss_pred C--------CccCcccccchhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHhccccCCCCC---CCCCCCCcccCCCceEE
Q psy17624 101 G--------EWMGVMHGDEIEYVFGHPLNRSIEYNARERDLSLRMMQAYARFALVGKPVP---DDVEWPLYTKDHPYYYI 169 (201)
Q Consensus 101 ~--------~~~Ga~H~~Dl~y~F~~~~~~~~~~~~~d~~ls~~m~~~~~~Fa~~g~P~~---~~~~Wp~~~~~~~~~l~ 169 (201)
+ .+.||+|++|+.|+|+++.......+++++.+++.|+++|+||||+|+|+. ..+.||+|+.+ ++.
T Consensus 440 ~~~~~~~~~~~~ga~H~~Dl~ylFg~~~~~~~~~~~~~~~ls~~m~~~w~nFak~G~P~~~~~~~~~Wp~y~~~---~~~ 516 (535)
T PF00135_consen 440 PPFIFSPDPPWRGACHGDDLPYLFGNPFLSPPNPTEDDRKLSDQMQRYWTNFAKTGNPNNPSSGPPEWPPYDPE---YLN 516 (535)
T ss_dssp STTSTECSETTGTSBTTTTHHHHTTGCCHCHHHTCHHHHHHHHHHHHHHHHHHHHSSTSCTTTTSSTSTTBSTT---EEE
T ss_pred cccccccccccccccchhhhhhhcCCCcccccccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCch---hhh
Confidence 3 477999999999999987654323377899999999999999999999932 24899999876 777
Q ss_pred EccCCCcCCCCCCccccchH
Q psy17624 170 FNAEKSGTGKGPRARTCSFW 189 (201)
Q Consensus 170 i~~~~~~~~~~~~~~~~~fW 189 (201)
+... ..+...++.++|+||
T Consensus 517 ~~~~-~~~~~~~~~~~c~FW 535 (535)
T PF00135_consen 517 IMLF-PIDRNNYREADCDFW 535 (535)
T ss_dssp ESSS-EEEEESTTHHHHHHH
T ss_pred ccCc-ccccccchhhcCcCC
Confidence 7776 677788899999999
No 4
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.86 E-value=4.1e-21 Score=159.71 Aligned_cols=155 Identities=23% Similarity=0.333 Sum_probs=122.4
Q ss_pred HHHHHHhccCChHHHHHHHHhhhCCCCCCCchHHHHHHHHHHhccceeccchHHHHHHHHhcCCceEEEEeccc-----C
Q psy17624 27 ILVNQIFKVKPESEQAAAIIHEYTDWENVMDEHLNQKLISDAVGDYFFICPTNHFAQTYASRGGKVYYYFFTQW-----G 101 (201)
Q Consensus 27 ~~l~~~~~~~~~~~~~~~i~~~Y~~~~~~~~~~~~~~~~~~~~~D~~f~~p~~~~a~~~~~~~~~vy~Y~f~~~-----~ 101 (201)
..+...+........ ++|..+|+... .....+.++++|++|.||+.+++++++ .+.|+|+|+|+|. +
T Consensus 324 ~~~~~~l~g~~~~~~-~~v~~~Y~~~~------~~~~~~~~~~tD~~F~~p~~~~a~a~~-~~ap~w~Yrf~~~~~~~~~ 395 (491)
T COG2272 324 DKVAARLPGKELINA-ERVPAAYPGVS------AAAAAFGALVTDRLFKAPSIRLAQAQS-AGAPTWLYRFDYAPDTVRV 395 (491)
T ss_pred HHHHHHhccccccch-hhhhhhccccc------hhHHHHHHHhhcceecchHHHHHHhcc-cCCCeeEEEeccCCccccc
Confidence 333344443333233 78888886432 357889999999999999999999988 4689999999994 4
Q ss_pred CccCcccccchhhhhcCCCCC--CCCCCHHHHHHHHHHHHHHHhccccCCCCCCC-CCCCCcccCCCceEEEccCCCcCC
Q psy17624 102 EWMGVMHGDEIEYVFGHPLNR--SIEYNARERDLSLRMMQAYARFALVGKPVPDD-VEWPLYTKDHPYYYIFNAEKSGTG 178 (201)
Q Consensus 102 ~~~Ga~H~~Dl~y~F~~~~~~--~~~~~~~d~~ls~~m~~~~~~Fa~~g~P~~~~-~~Wp~~~~~~~~~l~i~~~~~~~~ 178 (201)
+..||+|+.||.++|++.... .......+.+++.+|+++|+||||+|+|+... +.||.|+.+++++|+++.. .+++
T Consensus 396 ~~~gA~H~~El~~Vfg~~~~~~~~~~~~~~~~~~s~~~~~~w~nFArtg~p~~~~~~~Wp~yt~e~r~~l~~d~~-~kv~ 474 (491)
T COG2272 396 PGFGAPHATELSLVFGNLVALGSAAQTARATAKLSRQMQDAWANFARTGSPNGLGLPDWPAYTEERRATLVLDPE-IKVE 474 (491)
T ss_pred ccCCCccccceeeeeccccccccccccchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCceEEEeccc-ceec
Confidence 678999999999999997632 23456677899999999999999999999764 5699999999999999995 8888
Q ss_pred CCCCccccchHh
Q psy17624 179 KGPRARTCSFWN 190 (201)
Q Consensus 179 ~~~~~~~~~fW~ 190 (201)
.+++.++...|.
T Consensus 475 ~Dp~~~~r~~~~ 486 (491)
T COG2272 475 NDPRRDRREAWG 486 (491)
T ss_pred cChhHhHHhhhc
Confidence 888766444443
No 5
>KOG1516|consensus
Probab=98.91 E-value=9.8e-09 Score=89.76 Aligned_cols=144 Identities=21% Similarity=0.341 Sum_probs=102.7
Q ss_pred HHHHhhhCCCCCCCchHH-HHHHHHHHhccceeccchHHHHHHHHhcCCceEEEEeccc-----------CCccCccccc
Q psy17624 43 AAIIHEYTDWENVMDEHL-NQKLISDAVGDYFFICPTNHFAQTYASRGGKVYYYFFTQW-----------GEWMGVMHGD 110 (201)
Q Consensus 43 ~~i~~~Y~~~~~~~~~~~-~~~~~~~~~~D~~f~~p~~~~a~~~~~~~~~vy~Y~f~~~-----------~~~~Ga~H~~ 110 (201)
..+.+.|........... ......++.+|..|..+....++.....+.++|.|+|++. ....|+.|++
T Consensus 385 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~f~~~~~~~~~~~~~~~~~~~~~h~~ 464 (545)
T KOG1516|consen 385 SVLKAYYLKDSAGSKEFGYSLTSLSDIVSDLLFNFGTHRLLRLRREYGNPVYLYSFDYDNPVNFGRPGEKDPDTGVEHAD 464 (545)
T ss_pred HHHHHHhccccCchhhhhhhHHHHHHHhhhhheeccHHHHHHHHHhcCCCeEEEEEEecCcccccccccccCccCCcccc
Confidence 566666765443322222 6788999999999999999999999888789999999992 2335899999
Q ss_pred chhhhhcCCCCC-CCCCCHHHHHHHHHHHHHHHhccccCCCCCCC---CCCCCcccCCCceEEEccCCCcCCCCCCcccc
Q psy17624 111 EIEYVFGHPLNR-SIEYNARERDLSLRMMQAYARFALVGKPVPDD---VEWPLYTKDHPYYYIFNAEKSGTGKGPRARTC 186 (201)
Q Consensus 111 Dl~y~F~~~~~~-~~~~~~~d~~ls~~m~~~~~~Fa~~g~P~~~~---~~Wp~~~~~~~~~l~i~~~~~~~~~~~~~~~~ 186 (201)
|+.|+|+..... ....+..+..+ +.+|++||++|+|+... ..|++ .......+......+...+...++
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~fa~~g~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 537 (545)
T KOG1516|consen 465 DLRYLFGENFLKRPVMKSSFEKKL----IELWTNFAKTGNPNGTDLGTDKWEP---KVPRKLLIISKLPEMLDPFQDGRL 537 (545)
T ss_pred cceeeccccccccCCCCChHHHHH----HHHHHHHHhhCCCCCCCCCCCCCCc---cccccccccCchHHhhhhhhhhhh
Confidence 999999986432 23334555555 99999999999999743 47877 222233333332455556677778
Q ss_pred chHhhhh
Q psy17624 187 SFWNDFY 193 (201)
Q Consensus 187 ~fW~~l~ 193 (201)
.+|..+.
T Consensus 538 ~~~~~~~ 544 (545)
T KOG1516|consen 538 KIWDRLF 544 (545)
T ss_pred hhhhhhc
Confidence 8887654
No 6
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=64.90 E-value=10 Score=28.21 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHhhhC
Q psy17624 20 LPREKFLILVNQIFKVKPESEQAAAIIHEYT 50 (201)
Q Consensus 20 ~t~~~~~~~l~~~~~~~~~~~~~~~i~~~Y~ 50 (201)
||+++|.+-|+..+...++++. +++++.|.
T Consensus 1 M~k~efL~~L~~~L~~lp~~e~-~e~l~~Y~ 30 (181)
T PF08006_consen 1 MNKNEFLNELEKYLKKLPEEER-EEILEYYE 30 (181)
T ss_pred CCHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Confidence 6899999999999998888888 88888875
No 7
>PF08465 Herpes_TK_C: Thymidine kinase from Herpesvirus C-terminal; InterPro: IPR013672 This domain is found towards the C terminus in Herpesvirus Thymidine kinases. ; GO: 0004797 thymidine kinase activity, 0005524 ATP binding
Probab=52.56 E-value=8.3 Score=20.28 Aligned_cols=19 Identities=16% Similarity=0.697 Sum_probs=15.8
Q ss_pred CccccchHhhhhhccCCCC
Q psy17624 182 RARTCSFWNDFYPKLIPPP 200 (201)
Q Consensus 182 ~~~~~~fW~~l~~~~~~~~ 200 (201)
..+.+..|.+++-|+.++|
T Consensus 3 ~dDvpGlW~~IY~qi~kn~ 21 (33)
T PF08465_consen 3 QDDVPGLWTEIYTQILKNP 21 (33)
T ss_pred CCccccHHHHHHHHHHhCc
Confidence 4567889999999998886
No 8
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=36.02 E-value=56 Score=21.32 Aligned_cols=34 Identities=26% Similarity=0.493 Sum_probs=24.7
Q ss_pred cCCCCCCCHHHHHHHHHHHhccC--ChHHHHHHHHhh
Q psy17624 14 KDGPSTLPREKFLILVNQIFKVK--PESEQAAAIIHE 48 (201)
Q Consensus 14 ~~~~~~~t~~~~~~~l~~~~~~~--~~~~~~~~i~~~ 48 (201)
|...+.+|+.+|.++|+..+... +.+.. +.++..
T Consensus 4 k~~i~dyTE~EFl~~v~~i~~~~~~~ee~~-d~lv~h 39 (85)
T PF01320_consen 4 KNKISDYTESEFLEFVKEIFNAELKTEEEH-DELVDH 39 (85)
T ss_dssp -SSGGGSBHHHHHHHHHHHHHTCSSSCHHH-HHHHHH
T ss_pred hHHHHHhhHHHHHHHHHHHHcCCCCCHHHH-HHHHHH
Confidence 55678899999999999998753 55555 555554
No 9
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=33.76 E-value=1.1e+02 Score=19.95 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHhcc-----CChHHHHHHHHhhhCCCCCCCchHHHHHHHHHHhccceecc
Q psy17624 18 STLPREKFLILVNQIFKV-----KPESEQAAAIIHEYTDWENVMDEHLNQKLISDAVGDYFFIC 76 (201)
Q Consensus 18 ~~~t~~~~~~~l~~~~~~-----~~~~~~~~~i~~~Y~~~~~~~~~~~~~~~~~~~~~D~~f~~ 76 (201)
..++++++..++...+|. ..+..+ +.++...-.+. ++.-..+.+..++++....|
T Consensus 26 ~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~-~~ll~~~D~d~---DG~I~f~EF~~l~~~l~~~~ 85 (89)
T cd05023 26 YQLSKTEFLSFMNTELASFTKNQKDPGVL-DRMMKKLDLNS---DGQLDFQEFLNLIGGLAVAC 85 (89)
T ss_pred CeECHHHHHHHHHHhhhHhhcCCCCHHHH-HHHHHHcCCCC---CCcCcHHHHHHHHHHHHHHH
Confidence 479999999999998763 334566 77777663221 21123555666666554433
No 10
>COG4709 Predicted membrane protein [Function unknown]
Probab=33.35 E-value=71 Score=24.21 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHhhhC
Q psy17624 20 LPREKFLILVNQIFKVKPESEQAAAIIHEYT 50 (201)
Q Consensus 20 ~t~~~~~~~l~~~~~~~~~~~~~~~i~~~Y~ 50 (201)
||+.+|.+.|++.+..+.++.. .++++.|.
T Consensus 1 Mtk~efL~eL~~yL~~Lp~~~r-~e~m~dye 30 (195)
T COG4709 1 MTKTEFLNELEQYLEGLPREER-REIMYDYE 30 (195)
T ss_pred CCHHHHHHHHHHHHHhCCHHHH-HHHHHHHH
Confidence 6899999999999998888887 77777664
No 11
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=27.23 E-value=1.1e+02 Score=16.51 Aligned_cols=27 Identities=7% Similarity=0.175 Sum_probs=20.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhhhCC
Q psy17624 24 KFLILVNQIFKVKPESEQAAAIIHEYTD 51 (201)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~~i~~~Y~~ 51 (201)
+-...|...||..+.+.+ +.++..+.+
T Consensus 3 ~~v~~L~~mFP~~~~~~I-~~~L~~~~~ 29 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVI-EAVLQANNG 29 (42)
T ss_dssp HHHHHHHHHSSSS-HHHH-HHHHHHTTT
T ss_pred HHHHHHHHHCCCCCHHHH-HHHHHHcCC
Confidence 345678888999998888 888888753
No 12
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=21.72 E-value=2.4e+02 Score=18.35 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=37.8
Q ss_pred ccc-CCCCCCCHHHHHHHHHHHhcc-CCh-HHHHHHHHhhhCCCCCCCchHHHHHHHHHHhccceecc
Q psy17624 12 FEK-DGPSTLPREKFLILVNQIFKV-KPE-SEQAAAIIHEYTDWENVMDEHLNQKLISDAVGDYFFIC 76 (201)
Q Consensus 12 ~~~-~~~~~~t~~~~~~~l~~~~~~-~~~-~~~~~~i~~~Y~~~~~~~~~~~~~~~~~~~~~D~~f~~ 76 (201)
|.+ +..-.++.+++...|...+|. .+. +.+ +.+++..-.+. ++.-....|..+++.....|
T Consensus 17 fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v-~~mi~~~D~d~---DG~I~F~EF~~l~~~l~~~~ 80 (89)
T cd05022 17 ASVKGGKESLTASEFQELLTQQLPHLLKDVEGL-EEKMKNLDVNQ---DSKLSFEEFWELIGELAKAV 80 (89)
T ss_pred HhCCCCCCeECHHHHHHHHHHHhhhhccCHHHH-HHHHHHhCCCC---CCCCcHHHHHHHHHHHHHHH
Confidence 345 666788999999999997874 455 666 77776552111 11123555666666554433
No 13
>COG3124 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.44 E-value=78 Score=23.38 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=16.5
Q ss_pred HHHHHHHHHhccccCCCCCCCCCCCC
Q psy17624 134 SLRMMQAYARFALVGKPVPDDVEWPL 159 (201)
Q Consensus 134 s~~m~~~~~~Fa~~g~P~~~~~~Wp~ 159 (201)
|....+.++.|+| |||.. +|||
T Consensus 15 ssLlGnLl~DFVr-G~p~~---qyP~ 36 (193)
T COG3124 15 SSLLGNLLADFVR-GNPQE---QYPP 36 (193)
T ss_pred HHHHHHHHHHHHc-CCCcc---cCCH
Confidence 4456788999999 78874 5776
Done!