RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17624
(201 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 136 bits (344), Expect = 8e-38
Identities = 71/202 (35%), Positives = 92/202 (45%), Gaps = 20/202 (9%)
Query: 1 TYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPE-SEQAAAIIHEYTDWENVMDEH 59
FL Y D E S L E FL L+ ++ PE S A A+ EYTD + E
Sbjct: 316 LLFLAYVLPDPTEL---SELLNEDFLELLPELLPGAPELSRIADALKEEYTDDPDDNSE- 371
Query: 60 LNQKLISDAVGDYFFICPTNHFAQTYASRGGKVYYYFFTQ---------WGEWMGVMHGD 110
++ + D + DY F+CP A AS G VY Y F W WMGV HGD
Sbjct: 372 ESRDALVDLLSDYLFVCPIRLAAARLASAGSPVYLYRFDYRSSGSINKLWPPWMGVSHGD 431
Query: 111 EIEYVFGHPLNRSIEYNARERDLSLRMMQAYARFALVGKP---VPDDVEWPLYTKDHPYY 167
++ YVFG+PL R + Y+ E LS RMM + FA G P WP YT +
Sbjct: 432 DLPYVFGNPLMRKLLYSEEEEILSRRMMGYWTNFAKTGNPNGEAFGLPVWPPYTSE---E 488
Query: 168 YIFNAEKSGTGKGPRARTCSFW 189
Y+ + + G R C+FW
Sbjct: 489 YLEITLLNISTNGLREEDCNFW 510
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 100 bits (250), Expect = 8e-25
Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 18/190 (9%)
Query: 1 TYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEYTDWENVMDEHL 60
YF + +++L L+ + ++ A ++ +Y V D
Sbjct: 311 GYFAAMLLNFDAKL---IIETNDRWLELLPYLLFYADDAL-ADKVLEKYPGD--VDDSVE 364
Query: 61 NQKLISDAVGDYFFICPTNHF-AQTYASRGGKVYYYFFTQ--------WGEWMGVMHGDE 111
++K +SD + D F CP +F AQ + G VY Y F W W+G +HGDE
Sbjct: 365 SRKNLSDMLTDLLFKCPARYFLAQHRKAGGSPVYAYVFDHRSSLSVGRWPPWLGTVHGDE 424
Query: 112 IEYVFGHPLNRSIEYNARERDLSLRMMQAYARFALVGKPVPDDVE--WPLYTKDHPYYYI 169
I +VFG+PL E LS MM+ +A FA G P + WP YT + Y
Sbjct: 425 IFFVFGNPL-LKEGLREEEEKLSRTMMKYWANFAKTGNPNTEGNLVVWPAYTSESEKYLD 483
Query: 170 FNAEKSGTGK 179
N E + +
Sbjct: 484 INIEGTEIKQ 493
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 55.1 bits (133), Expect = 4e-09
Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 9/119 (7%)
Query: 63 KLISDAVGDYFFICPTNHFAQTYASRGGKVYYYFF-----TQWGEWMGVMHGDEIEYVFG 117
V D F P+ AQ S G + Y F T G H E+ VFG
Sbjct: 353 AAFGALVTDRLFKAPSIRLAQA-QSAGAPTWLYRFDYAPDTVRVPGFGAPHATELSLVFG 411
Query: 118 HPLNRSIEY--NARERDLSLRMMQAYARFALVGKPV-PDDVEWPLYTKDHPYYYIFNAE 173
+ + LS +M A+A FA G P +WP YT++ + + E
Sbjct: 412 NLVALGSAAQTARATAKLSRQMQDAWANFARTGSPNGLGLPDWPAYTEERRATLVLDPE 470
>gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase. This model
describes 2-deoxy-D-gluconate 3-dehydrogenase (also
called 2-keto-3-deoxygluconate oxidoreductase), a member
of the family of short-chain-alcohol dehydrogenases
(pfam00106). This protein has been characterized in
Erwinia chrysanthemi as an enzyme of pectin degradation
[Energy metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 248
Score = 30.5 bits (69), Expect = 0.51
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 38/105 (36%)
Query: 2 YFLLYDFIDYFEKDGPSTLPR-----EKFLILVNQIFKVKPESEQAAAIIH-----EYT- 50
L D D + + + ILVN A II E++
Sbjct: 55 LSLTADLSD--IEAIKALVDSAVEEFGHIDILVNN-----------AGIIRRADAEEFSE 101
Query: 51 -DWENVMDEHLNQKLISDAVGDYFFICPT--NHFAQTYASRGGKV 92
DW++VM+ +N K + FF+ HF + RGGK+
Sbjct: 102 KDWDDVMN--VNLKSV-------FFLTQAAAKHFLKQ--GRGGKI 135
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase;
Provisional.
Length = 741
Score = 29.6 bits (67), Expect = 1.4
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 118 HPLNRSIEYNARERDLSLRMMQAYARFALVGKPVPDDVE 156
HPL ++I A+ R L++ +A ++ AL G + V
Sbjct: 481 HPLAQAIVREAQVRGLAI--PEAESQRALAGSGIEGQVN 517
>gnl|CDD|217849 pfam04023, FeoA, FeoA domain. This family includes FeoA a small
protein, probably involved in Fe2+ transport. This
presumed short domain is also found at the C-terminus of
a variety of metal dependent transcriptional regulators.
This suggests that this domain may be metal-binding. In
most cases this is likely to be either iron or
manganese.
Length = 74
Score = 27.2 bits (61), Expect = 1.8
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 104 MGVMHGDEIEYVFGHPLNRSIEYNARERDLSLR 136
+G++ G E+ V P + ++LR
Sbjct: 31 LGLVPGTEVTVVRKAPFGGPLVVRVGGTRIALR 63
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown
function.
Length = 182
Score = 28.1 bits (63), Expect = 2.6
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 64 LISDAVGDYFFICPT----NHFAQ 83
LI+ + D+F++CP+ HFA
Sbjct: 27 LITPSNKDFFYVCPSHLQDRHFAT 50
>gnl|CDD|128580 smart00284, OLF, Olfactomedin-like domains.
Length = 255
Score = 27.9 bits (62), Expect = 3.4
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 69 VGDYFFICPTNHFAQTYASRGGKVYYYFFTQWG--EWMGVMHGDEIEYVFGHPLNRSIEY 126
+ F IC + ++ S+G KV+Y + T G + + + EY+ ++Y
Sbjct: 178 ASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYI------SMLDY 231
Query: 127 NARERDL 133
N +R L
Sbjct: 232 NPNDRKL 238
>gnl|CDD|237955 PRK15389, PRK15389, fumarate hydratase; Provisional.
Length = 536
Score = 28.0 bits (63), Expect = 3.6
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 6/21 (28%)
Query: 148 GKPVPDDVEWPLYTKDHPYYY 168
G+ +P Y KDHP YY
Sbjct: 406 GEGLPQ------YLKDHPVYY 420
>gnl|CDD|203457 pfam06460, NSP13, Coronavirus NSP13. This family covers the NSP13
region of the coronavirus polyprotein. This protein has
the predicted function of an mRNA cap-1
methyltransferase function.
Length = 298
Score = 27.1 bits (60), Expect = 7.4
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 5 LYDFIDYFEK-----DGPSTLPREKFLILVNQIFKVKPESEQAAAIIH-EYTDWEN 54
LY+ + YF +T E FLI +N + K P+ E +H Y W N
Sbjct: 179 LYELMQYFSFWTMFCTNVNTSSSEAFLIGINYLGKEPPKEEIDGNTMHANYIFWRN 234
>gnl|CDD|216078 pfam00716, Peptidase_S21, Assemblin (Peptidase family S21).
Length = 326
Score = 26.6 bits (59), Expect = 8.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 12 FEKDGPSTLPREKFLILVNQIF 33
F + GPS LP E L L++
Sbjct: 68 FAQRGPSLLPPEPLLELLSNYL 89
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.462
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,024,930
Number of extensions: 1029426
Number of successful extensions: 911
Number of sequences better than 10.0: 1
Number of HSP's gapped: 902
Number of HSP's successfully gapped: 20
Length of query: 201
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 109
Effective length of database: 6,857,034
Effective search space: 747416706
Effective search space used: 747416706
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)