RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17624
(201 letters)
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 208 bits (531), Expect = 8e-65
Identities = 104/204 (50%), Positives = 132/204 (64%), Gaps = 10/204 (4%)
Query: 1 TYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEYTDWENVMDEHL 60
TYFLLYDFIDYF+KD + LPR+K+L ++N IF + + AII +YT WE +
Sbjct: 369 TYFLLYDFIDYFDKDDATALPRDKYLEIMNNIFGKATQ-AEREAIIFQYTSWEG-NPGYQ 426
Query: 61 NQKLISDAVGDYFFICPTNHFAQTYASRGGKVYYYFFTQ------WGEWMGVMHGDEIEY 114
NQ+ I AVGD+FF CPTN +AQ A RG V+YY+FT WGEWMGV+HGDEIEY
Sbjct: 427 NQQQIGRAVGDHFFTCPTNEYAQALAERGASVHYYYFTHRTSTSLWGEWMGVLHGDEIEY 486
Query: 115 VFGHPLNRSIEYNARERDLSLRMMQAYARFALVGKPVPDDVEWPLYTKDHPYYYIFNAEK 174
FG PLN S++Y ER+L RM+ A FA G P D EWP ++K+ P YYIF+ +
Sbjct: 487 FFGQPLNNSLQYRPVERELGKRMLSAVIEFAKTGNPAQDGEEWPNFSKEDPVYYIFSTDD 546
Query: 175 SGT--GKGPRARTCSFWNDFYPKL 196
+GP A CSFWND+ PK+
Sbjct: 547 KIEKLARGPLAARCSFWNDYLPKV 570
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 205 bits (523), Expect = 7e-64
Identities = 74/207 (35%), Positives = 104/207 (50%), Gaps = 12/207 (5%)
Query: 1 TYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEYTDWENVMDEHL 60
+YFL+Y + F KD S + R +FL V + A A++ YTDW + D
Sbjct: 336 SYFLVYG-VPGFSKDNESLISRAQFLAGVRIGVPQASD-LAAEAVVLHYTDWLHPEDPTH 393
Query: 61 NQKLISDAVGDYFFICPTNHFAQTYASRGGKVYYYFFTQ------WGEWMGVMHGDEIEY 114
+ +S VGD+ +CP A A++G +VY Y F W WMGV HG EIE+
Sbjct: 394 LRDAMSAVVGDHNVVCPVAQLAGRLAAQGARVYAYIFEHRASTLTWPLWMGVPHGYEIEF 453
Query: 115 VFGHPLNRSIEYNARERDLSLRMMQAYARFALVGKPVP----DDVEWPLYTKDHPYYYIF 170
+FG PL+ S+ Y ER + R+M+ + FA G P +WP YT Y
Sbjct: 454 IFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYTTAAQQYVSL 513
Query: 171 NAEKSGTGKGPRARTCSFWNDFYPKLI 197
N + +G RA+TC+FWN F PKL+
Sbjct: 514 NLKPLEVRRGLRAQTCAFWNRFLPKLL 540
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 204 bits (521), Expect = 1e-63
Identities = 76/206 (36%), Positives = 101/206 (49%), Gaps = 11/206 (5%)
Query: 1 TYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEYTDWENVMDEHL 60
++FLLY F KD S + RE F+ V + A+ +YTDW + +
Sbjct: 329 SFFLLYGA-PGFSKDSESKISREDFMSGVKLSVPHAND-LGLDAVTLQYTDWMDDNNGIK 386
Query: 61 NQKLISDAVGDYFFICPTNHFAQTYASRGGKVYYYFFTQ------WGEWMGVMHGDEIEY 114
N+ + D VGD+ ICP HF Y G Y YFF W EWMGV+HG EIE+
Sbjct: 387 NRDGLDDIVGDHNVICPLMHFVNKYTKFGNGTYLYFFNHRASNLVWPEWMGVIHGYEIEF 446
Query: 115 VFGHPLNRSIEYNARERDLSLRMMQAYARFALVGKPVP---DDVEWPLYTKDHPYYYIFN 171
VFG PL + + Y A E LS R+M +A FA G P + +WPL+T + N
Sbjct: 447 VFGLPLVKELNYTAEEEALSRRIMHYWATFAKTGNPNEPHSQESKWPLFTTKEQKFIDLN 506
Query: 172 AEKSGTGKGPRARTCSFWNDFYPKLI 197
E + R + C FWN F PKL+
Sbjct: 507 TEPMKVHQRLRVQMCVFWNQFLPKLL 532
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 201 bits (514), Expect = 1e-62
Identities = 70/205 (34%), Positives = 99/205 (48%), Gaps = 11/205 (5%)
Query: 1 TYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEYTDWENVMDEHL 60
T FL+Y F KD S + R++F + F E +I+ YTDW +
Sbjct: 327 TAFLVYGA-PGFSKDNNSIITRKEFQEGLKIFFPGVSE-FGKESILFHYTDWVDDQRPEN 384
Query: 61 NQKLISDAVGDYFFICPTNHFAQTYASRGGKVYYYFFTQ------WGEWMGVMHGDEIEY 114
++ + D VGDY FICP F + ++ G ++Y+F W EWMGVMHG EIE+
Sbjct: 385 YREALGDVVGDYNFICPALEFTKKFSEWGNNAFFYYFEHRSSKLPWPEWMGVMHGYEIEF 444
Query: 115 VFGHPLNRSIEYNARERDLSLRMMQAYARFALVGKPVP---DDVEWPLYTKDHPYYYIFN 171
VFG PL R +Y E LS +++ +A FA G P WP++ Y N
Sbjct: 445 VFGLPLERRDQYTKAEEILSRSIVKRWANFAKYGNPQETQNQSTSWPVFKSTEQKYLTLN 504
Query: 172 AEKSGTGKGPRARTCSFWNDFYPKL 196
E + RA+ C FW F+PK+
Sbjct: 505 TESTRIMTKLRAQQCRFWTSFFPKV 529
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 179 bits (457), Expect = 6e-54
Identities = 53/211 (25%), Positives = 76/211 (36%), Gaps = 18/211 (8%)
Query: 1 TYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEYTD-WENVMDEH 59
F+ D T E F LV+ + K A A YT+ W +
Sbjct: 322 HLFVGMDVPAINSNKQDVT--EEDFYKLVSGLTVTKGL-RGAQATYEVYTEPWAQDSSQE 378
Query: 60 LNQKLISDAVGDYFFICPTNHFAQTYASRG--GKVYYYFFTQ------WGEWMGVMHGDE 111
+K + D D F+ PT + S Y Y F+Q + +WMG H D+
Sbjct: 379 TRKKTMVDLETDILFLIPTKIAVAQHKSHAKSANTYTYLFSQPSRMPIYPKWMGADHADD 438
Query: 112 IEYVFGHPLNRSIEYNARERDLSLRMMQAYARFALVGKPVPDD----VEWPLYTKDHPYY 167
++YVFG P + Y A++R +S M+ + FA G P W YT + Y
Sbjct: 439 LQYVFGKPFATPLGYRAQDRTVSKAMIAYWTNFARTGDPNTGHSTVPANWDPYTLEDDNY 498
Query: 168 YIFNAEKSGT--GKGPRARTCSFWNDFYPKL 196
N + R FW Y L
Sbjct: 499 LEINKQMDSNSMKLHLRTNYLQFWTQTYQAL 529
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 169 bits (429), Expect = 4e-50
Identities = 42/212 (19%), Positives = 77/212 (36%), Gaps = 20/212 (9%)
Query: 1 TYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPES-EQAAAIIHEYTDWENVMDEH 59
+ + + L ++ + L+ + + + + E +Y + D
Sbjct: 338 GWLIPMLMSYPLSEGQ---LDQKTAMSLLWKSYPLVCIAKELIPEATEKYLGGTD--DTV 392
Query: 60 LNQKLISDAVGDYFFICPTNHFAQTYASRGGKVYYYFFTQ--------WGEWMGVMHGDE 111
+ L D + D F P+ A+ + G Y Y F + + HGDE
Sbjct: 393 KKKDLFLDLIADVMFGVPSVIVARNHRDAGAPTYMYEFQYRPSFSSDMKPKTVIGDHGDE 452
Query: 112 IEYVFGHPLNRSIEYNARERDLSLRMMQAYARFALVGKPVPDD-VEWPLYTKDHPYYYIF 170
+ VFG P + + E LS +M+ +A FA G P + WP Y + Y I
Sbjct: 453 LFSVFGAPFLKE-GASEEEIRLSKMVMKFWANFARNGNPNGEGLPHWPEYNQKEGYLQI- 510
Query: 171 NAEKSGTGKGPRARTCSFWNDFYPKLI--PPP 200
+ + + + +FW + + K PP
Sbjct: 511 -GANTQAAQKLKDKEVAFWTNLFAKKAVEKPP 541
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 163 bits (413), Expect = 1e-47
Identities = 43/228 (18%), Positives = 73/228 (32%), Gaps = 39/228 (17%)
Query: 1 TYFLLYDFIDYFEKDGPSTLPREKFL----ILVNQIFKVKPESEQAA-AIIHEYTDWENV 55
F+ D + F V+ ++ + I YTDW +
Sbjct: 343 LKFVENIV------DSDDGVSASDFDFAVSNFVDNLYGYPEGKDVLRETIKFMYTDWADR 396
Query: 56 MDEHLNQKLISDAVGDYFFICPTNHFAQTYASRGGKVYYYFFTQ------WGEWMGVMHG 109
+ +K + D+ ++ P A +++ G Y+Y F W HG
Sbjct: 397 HNPETRRKTLLALFTDHQWVAPAVATADLHSNFGSPTYFYAFYHHCQTDQVPAWADAAHG 456
Query: 110 DEIEYVFGHPLNRS-----IEYNARERDLSLRMMQAYARFALVGKPVPD----------- 153
DE+ YV G P+ ++ + LS +M + FA G P
Sbjct: 457 DEVPYVLGIPMIGPTELFPCNFSKNDVMLSAVVMTYWTNFAKTGDPNQPVPQDTKFIHTK 516
Query: 154 -----DVEWPLYTKDHPYYYIFNAEKSGTGKGPRARTCSFWNDFYPKL 196
+V W Y++ Y K + RA + W + P L
Sbjct: 517 PNRFEEVAWTRYSQKDQLYLHIG-LKPRVKEHYRANKVNLWLELVPHL 563
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 157 bits (399), Expect = 7e-46
Identities = 33/195 (16%), Positives = 50/195 (25%), Gaps = 15/195 (7%)
Query: 16 GPSTLPREKFLILVNQIFKVKPESEQAAAIIHEYTDWENVMDEHLNQKLISDAVGDYFFI 75
+ + +Q I Y + + S A GD F
Sbjct: 327 AYNASSSADVSRFFKNNYPNLTS-QQLNEINQVYPRGKLLPRHAAYFGASSAAYGDATFT 385
Query: 76 CPTNHFAQTYASRGG-KVYYYFFTQ-----WGEWMGVMHGDEIEYVFGH----PLNRSIE 125
CP NH A + A V+ Y +GV H E+ +FG L+
Sbjct: 386 CPGNHVASSAARYLPNSVWNYRVNIIDESNIAGGIGVPHTFELPAIFGAGSTGTLSSDSS 445
Query: 126 YNARERDLSLRMMQAYARFALVGKP----VPDDVEWPLYTKDHPYYYIFNAEKSGTGKGP 181
Y + M + F P EW + N
Sbjct: 446 YLTYNAAIIPVTMHYFISFVQTLNPNTYRYATAPEWNTWGNGQRLRLQTNDTAMEAVPES 505
Query: 182 RARTCSFWNDFYPKL 196
+ C+FW +
Sbjct: 506 SLQDCAFWKSLTVPM 520
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 145 bits (369), Expect = 1e-41
Identities = 37/199 (18%), Positives = 64/199 (32%), Gaps = 25/199 (12%)
Query: 1 TYFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEYTDWENVMDEHL 60
F L D + L ++ L +N+ I Y +
Sbjct: 312 NLFTLTD-------PSWTKLGEKELLDRINREV-----GPVPEEAIRYYKETAE--PSAP 357
Query: 61 NQKLISDAVGDYFFICPTNHFAQTYASRGGKVYYYFFTQ----WGEWMGVMHGDEIEYVF 116
+ + F+ A A++G VY Y F +G + H E+ +VF
Sbjct: 358 TWQTWLRIMTYRVFVEGMLRTADAQAAQGADVYMYRFDYETPVFGGQLKACHALELPFVF 417
Query: 117 GHP----LNRSIEYNARERDLSLRMMQAYARFALVGKPVPDDV--EWPLYTKDHPYYYIF 170
+ + + ++ M A+ FA G P + WP YT + ++F
Sbjct: 418 HNLHQPGVANFVGNRPEREAIANEMHYAWLSFARTGDPNGAHLPEAWPAYTNERKAAFVF 477
Query: 171 NAEKSGTGKGPRARTCSFW 189
+A S P R + W
Sbjct: 478 SAA-SHVEDDPFGRERAAW 495
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 145 bits (367), Expect = 4e-41
Identities = 36/213 (16%), Positives = 63/213 (29%), Gaps = 30/213 (14%)
Query: 2 YFLLYDFIDYFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEYTDWENVMDEHLN 61
F D + +++ +P E A+ +Y M+
Sbjct: 342 QFEQIDIVSKIKENPGILVPLSVLFSSAPDTVA-----EITKAMHEKYFKKSVDMEG--- 393
Query: 62 QKLISDAVGDYFFICPTNHFAQTYASRGG-KVYYYFFTQWGE-----------WMGVMHG 109
+ D +F+ P A A G VY Y F+ G+ + G H
Sbjct: 394 ---YIELCTDSYFMYPAISLAIKRARSNGAPVYLYQFSFDGDYSVFREVNHLNFEGAGHI 450
Query: 110 DEIEYVFGHP----LNRSIEYNARERDLSLRMMQAYARFALVGKPVPDDVEWPLYTKDHP 165
+++ YVF + S + ++ + M F PV D WP D+
Sbjct: 451 EDLTYVFRTNSMLGGHASFPPHDKDDHMKYWMTSFITNFMKYSNPVTDAKLWPEVRADNL 510
Query: 166 YYYIFNAEKSGTGKGP---RARTCSFWNDFYPK 195
Y + P + F++ Y
Sbjct: 511 RYQDIDTPDVYQNVKPHSEQRDMLDFFDSIYNW 543
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 126 bits (319), Expect = 2e-34
Identities = 26/196 (13%), Positives = 54/196 (27%), Gaps = 29/196 (14%)
Query: 11 YFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEYTDWENVMDEHLN--------- 61
F + + IF E ++ Y +V
Sbjct: 357 AFAPVALNATTTPHVKKWLQYIFYDASE-ASIDRVLSLYPQTLSVGSPFRTGILNALTPQ 415
Query: 62 QKLISDAVGDYFFICPTNHFAQTYASRGGKVYYYFFTQ---WGEWMGVMHGDEIEYVFGH 118
K ++ + D F P A++ + Y T ++G HG+E+ + F
Sbjct: 416 FKRVAAILSDMLFQSPRRVMLS--ATKDVNRWTYLSTHLHNLVPFLGTFHGNELIFQFNV 473
Query: 119 PLNRSIEYNARERDLSLRMMQAYARFALVGKP--VPDDVEWPLYTKDHPYYYIFNAEKSG 176
+ + ++ + FA P + ++W YT + + +
Sbjct: 474 NIG-----------PANSYLRYFISFANHHDPNVGTNLLQWDQYTDEGKEMLEIHMTDNV 522
Query: 177 TGKGP-RARTCSFWND 191
R S +
Sbjct: 523 MRTDDYRIEGISNFET 538
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 125 bits (317), Expect = 2e-34
Identities = 29/157 (18%), Positives = 47/157 (29%), Gaps = 18/157 (11%)
Query: 40 EQAAAIIHEYTDWENVMDEHLNQKLISDAVGDYFFICPTNHFAQTYASRGGKVYYYFFT- 98
A Y + D F P +A + V+ Y F
Sbjct: 338 PLAEKAADLYPRSLESQ---------IHMMTDLLFWRPAVAYASAQS-HYAPVWMYRFDW 387
Query: 99 --QWGEWMGVMHGDEIEYVFGH----PLNRSIEYNARERDLSLRMMQAYARFALVGKPVP 152
+ + H E+ +VFG+ E + LS + A+ FA G P
Sbjct: 388 HPEKPPYNKAFHALELPFVFGNLDGLERMAKAEITDEVKQLSHTIQSAWITFAKTGNPST 447
Query: 153 DDVEWPLYTKDHPYYYIFNAEKSGTGKGPRARTCSFW 189
+ V WP Y ++ I ++E P +
Sbjct: 448 EAVNWPAYHEETRETVILDSE-ITIENDPESEKRQKL 483
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 121 bits (304), Expect = 2e-32
Identities = 36/198 (18%), Positives = 53/198 (26%), Gaps = 31/198 (15%)
Query: 11 YFEKDGPSTLPREKFLILVNQIFKVKPESEQAAAIIHEYTDWENVMDEHLN--------- 61
F + + Q F + + ++ Y
Sbjct: 344 IFGLSSLNVTTNAQARAYFKQSFIHASD-AEIDTLMAAYPQDITQGSPFDTGIFNAITPQ 402
Query: 62 QKLISDAVGDYFFICPTNHFAQTYASRGGKVYYYFFTQ--WGEWMGVMHGDEIEYVFGHP 119
K IS +GD FI +F + GG Y + Q MG H ++I +
Sbjct: 403 FKRISAVLGDLAFIHARRYFLNHFQ--GGTKYSFLSKQLSGLPIMGTFHANDIVWQDYLL 460
Query: 120 LNRSIEYNARERDLSLRMMQAYARFALVGKP--VPDDVEWPLYTKDHPYY---YIFNAEK 174
+ S+ A+ FA P V WP YT + NA
Sbjct: 461 GS-----------GSVIYNNAFIAFATDLDPNTAGLLVNWPKYTSSSQSGNNLMMINALG 509
Query: 175 SGTGKGP-RARTCSFWND 191
TGK R
Sbjct: 510 LYTGKDNFRTAGYDALMT 527
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89,
PSI-2, protein structure initiative; NMR {Pseudomonas
aeruginosa} SCOP: b.34.1.2
Length = 75
Score = 32.6 bits (75), Expect = 0.014
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 104 MGVMHGDEIEYVFGHPLNRSIEYNARERDLSLRMMQA 140
MG++ G + V PL I+ R+ L+LR
Sbjct: 30 MGLLPGAALRVVRIAPLGDPIQVETRQTSLALRRKDL 66
>2k5i_A Iron transport protein; iron(II) transport protein A, FEOA, ,
structural genomic, structural genomics, PSI-2; NMR
{Clostridium thermocellum}
Length = 162
Score = 33.7 bits (77), Expect = 0.016
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 104 MGVMHGDEIEYVFGHPLNRSIEYNARERDLSLRMMQAYARFALVGKPVPDDVEWPLYTKD 163
MG + G+EIE V PL I R+++LR + A V + V ++ PL D
Sbjct: 30 MGFVPGEEIEIVQVAPLGDPIVCKIGNRNITLR--KREADLIEV-EVVGGEL--PLILAD 84
Query: 164 HPYYYIFN 171
Y I
Sbjct: 85 DGTYEITK 92
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT,
structural genomics, PSI-2, protein structure
initiative; NMR {Chlorobaculum tepidum}
Length = 105
Score = 32.8 bits (75), Expect = 0.018
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 104 MGVMHGDEIEYVFGHPLNRSIEYNARERDLSLRMMQA 140
+G++ G +++ + PL IE N L++R +A
Sbjct: 30 LGLVRGAKLKVLRFAPLGDPIEVNCNGMLLTMRRNEA 66
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium; NMR {Clostridium thermocellum atcc 27405}
Length = 81
Score = 31.9 bits (73), Expect = 0.023
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 104 MGVMHGDEIEYVFGHPLNRSIEYNARERDLSLRMMQA 140
MG+ G EI PL I+ N R +LSLR A
Sbjct: 31 MGITRGCEIYIRKVAPLGDPIQINVRGYELSLRKSAA 67
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; NMR {Clostridium acetobutylicum}
Length = 86
Score = 31.9 bits (73), Expect = 0.024
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 104 MGVMHGDEIEYVFGHPLNRSIEYNARERDLSLRMMQA 140
MG++ G EI P+ I R LSLR +A
Sbjct: 34 MGIVRGTEIYIEGKAPMGDPIALRLRGYSLSLRKSEA 70
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae}
SCOP: b.34.1.2
Length = 75
Score = 31.8 bits (73), Expect = 0.026
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 104 MGVMHGDEIEYVFGHPLNRSIEYNARERDLSLRMMQA 140
+G++ G V PL + R L LR
Sbjct: 29 LGMLPGSSFHVVRVAPLGDPVHIETRRVSLVLRKKDL 65
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 6.7
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 12/30 (40%)
Query: 23 EKFLILVNQIFKVK-------PESEQAAAI 45
EK + K++ +S A AI
Sbjct: 18 EK-----QALKKLQASLKLYADDSAPALAI 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.462
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,434,386
Number of extensions: 201243
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 520
Number of HSP's successfully gapped: 26
Length of query: 201
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 112
Effective length of database: 4,216,824
Effective search space: 472284288
Effective search space used: 472284288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.5 bits)