BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17626
(184 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|307611923|ref|NP_001182628.1| cryptochrome 1 [Bombyx mori]
gi|306416108|gb|ADM86932.1| cryptochrome 1 [Bombyx mori]
gi|306416112|gb|ADM86934.1| cryptochrome 1 [Bombyx mori]
Length = 536
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 88/119 (73%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD+Q K +GG+L +V+G P ++F++L E KLCFEQDC
Sbjct: 44 GTKVVGYNRMRYLLEALDDLDKQFKKYGGRLLLVKGKPSAVFRRLWEEFGIRKLCFEQDC 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +W RD+ VK C E +T +E VSHTLW+P+ VI+ NG +PPLTY+M+LHTV+ IG
Sbjct: 104 EPVWRPRDESVKTACREIGVTCREHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIG 162
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 49/72 (68%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
+ +++ GT +GYNR R+LLE L DLD+Q K +GG+L +V+G P ++F++L E
Sbjct: 33 FPIFIFDGETAGTKVVGYNRMRYLLEALDDLDKQFKKYGGRLLLVKGKPSAVFRRLWEEF 92
Query: 171 NFTKLCFEQDCE 182
KLCFEQDCE
Sbjct: 93 GIRKLCFEQDCE 104
>gi|62955979|gb|AAY23345.1| antennal cryptochrome [Mamestra brassicae]
Length = 548
Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 85/119 (71%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD QLK HGG+L +++G P +F++L E +LCFEQDC
Sbjct: 44 GTKVVGYNRMRYLLEALEDLDNQLKKHGGRLIMIKGKPNVVFRRLWEEFGIRRLCFEQDC 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +W RD VK C E + KE VSHTLW+P+ VI+ NG +PPLTY+M+LHTV+ IG
Sbjct: 104 EPVWRARDDSVKSACKEIGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIG 162
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 48/72 (66%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
+ +++ GT +GYNR R+LLE L DLD QLK HGG+L +++G P +F++L E
Sbjct: 33 FPVFIFDGETAGTKVVGYNRMRYLLEALEDLDNQLKKHGGRLIMIKGKPNVVFRRLWEEF 92
Query: 171 NFTKLCFEQDCE 182
+LCFEQDCE
Sbjct: 93 GIRRLCFEQDCE 104
>gi|148467519|gb|ABQ65680.1| antennal cryptochrome 1 [Spodoptera littoralis]
Length = 348
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 84/119 (70%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD Q K HGG+L +++G P +F++L E KLCFEQDC
Sbjct: 44 GTKVVGYNRMRYLLEALDDLDNQFKKHGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDC 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +W RD VK C E + KE VSHTLW+P+ VI+ NG +PPLTY+M+LHTV+ IG
Sbjct: 104 EPVWRARDDSVKNACKEIGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIG 162
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 43/62 (69%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
GT +GYNR R+LLE L DLD Q K HGG+L +++G P +F++L E KLCFEQDC
Sbjct: 44 GTKVVGYNRMRYLLEALDDLDNQFKKHGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDC 103
Query: 182 EA 183
E
Sbjct: 104 EP 105
>gi|404313303|gb|AFR54426.1| cryptochrome 1 [Mythimna separata]
Length = 528
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 85/119 (71%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD QLK HGG+L +++G P +F++L E +LCFEQDC
Sbjct: 44 GTKLVGYNRMRYLLEALEDLDSQLKKHGGRLIMLKGKPNVVFRRLWEEFGIRRLCFEQDC 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +W RD VK C E + KE VSHTLW+P+ VI+ NG +PPLTY+M+LHTV+ IG
Sbjct: 104 EPVWRARDDSVKAACKEIGVVCKENVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIG 162
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 44/61 (72%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
GT +GYNR R+LLE L DLD QLK HGG+L +++G P +F++L E +LCFEQDC
Sbjct: 44 GTKLVGYNRMRYLLEALEDLDSQLKKHGGRLIMLKGKPNVVFRRLWEEFGIRRLCFEQDC 103
Query: 182 E 182
E
Sbjct: 104 E 104
>gi|324103935|gb|ADY17887.1| cryptochrome [Spodoptera exigua]
gi|324103937|gb|ADY17888.1| cryptochrome [Spodoptera exigua]
Length = 548
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 84/119 (70%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD Q K HGG+L +++G P +F++L E KLCFEQDC
Sbjct: 44 GTKVVGYNRMRYLLEALDDLDSQFKKHGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDC 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +W RD VK C E + KE VSHTLW+P+ VI+ NG +PPLTY+M+LHTV+ IG
Sbjct: 104 EPVWRARDDSVKNACKEIGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIG 162
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 43/61 (70%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
GT +GYNR R+LLE L DLD Q K HGG+L +++G P +F++L E KLCFEQDC
Sbjct: 44 GTKVVGYNRMRYLLEALDDLDSQFKKHGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDC 103
Query: 182 E 182
E
Sbjct: 104 E 104
>gi|312371404|gb|EFR19605.1| hypothetical protein AND_22153 [Anopheles darlingi]
Length = 608
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 92/133 (69%), Gaps = 2/133 (1%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR +FLLE LADLDRQ + GGQL + +G ++ ++L ELN KLCFEQDC
Sbjct: 111 GTRVVGYNRMKFLLESLADLDRQFRELGGQLLVFRGDSETVLRRLFEELNIKKLCFEQDC 170
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG- 122
E +W +RD++V K C ++ E VSHTLW+P VIQTNG++PPLTY+M+LHTV IG
Sbjct: 171 EPIWRERDERVTKLCETMDVKCVENVSHTLWNPNEVIQTNGDIPPLTYQMFLHTVDIIGE 230
Query: 123 -TMHIGYNRFRFL 134
+G F F+
Sbjct: 231 PPRPVGAPDFEFI 243
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 103 NGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISI 162
+ N P + +++ GT +GYNR +FLLE LADLDRQ + GGQL + +G ++
Sbjct: 92 SSNEPVKLFPVFIFDGESAGTRVVGYNRMKFLLESLADLDRQFRELGGQLLVFRGDSETV 151
Query: 163 FQKLKRELNFTKLCFEQDCE 182
++L ELN KLCFEQDCE
Sbjct: 152 LRRLFEELNIKKLCFEQDCE 171
>gi|13022111|gb|AAK11644.1|AF333998_1 cryptochrome [Antheraea pernyi]
Length = 525
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 85/119 (71%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD Q K +GG+L +++G P +F++L E KLCFEQDC
Sbjct: 44 GTKLVGYNRMRYLLEALEDLDNQFKKYGGKLIMLKGKPSDVFRRLWEEFGIRKLCFEQDC 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E LW RD VK C E + +E+VSHTLW+P+ VI+ NG +PPLTY+M+LHTV+ +G
Sbjct: 104 EPLWRARDDGVKSACREIGVACREYVSHTLWEPDTVIRANGGIPPLTYQMFLHTVTIVG 162
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 47/72 (65%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
+ +++ GT +GYNR R+LLE L DLD Q K +GG+L +++G P +F++L E
Sbjct: 33 FPIFVFDGETAGTKLVGYNRMRYLLEALEDLDNQFKKYGGKLIMLKGKPSDVFRRLWEEF 92
Query: 171 NFTKLCFEQDCE 182
KLCFEQDCE
Sbjct: 93 GIRKLCFEQDCE 104
>gi|124107288|dbj|BAF45421.1| cryptochrome precursor [Dianemobius nigrofasciatus]
Length = 539
Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 87/119 (73%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR +FLLE L D+D QLK +GG L++ G+P+ +FQ + + + KLCFEQDC
Sbjct: 50 GTKLVGYNRMKFLLESLQDIDSQLKKYGGNLYLFHGTPLCVFQYISQTIGLHKLCFEQDC 109
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +W RD VKK+C EN I E VSHTLW+P VI+TNG +PPLT++M++HTVS IG
Sbjct: 110 EPIWQHRDDLVKKFCKENGIKCIERVSHTLWNPHDVIKTNGGIPPLTFEMFVHTVSVIG 168
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 44/62 (70%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
GT +GYNR +FLLE L D+D QLK +GG L++ G+P+ +FQ + + + KLCFEQDC
Sbjct: 50 GTKLVGYNRMKFLLESLQDIDSQLKKYGGNLYLFHGTPLCVFQYISQTIGLHKLCFEQDC 109
Query: 182 EA 183
E
Sbjct: 110 EP 111
>gi|158301399|ref|XP_321104.4| AGAP001958-PA [Anopheles gambiae str. PEST]
gi|205696380|sp|Q7PYI7.4|CRY1_ANOGA RecName: Full=Cryptochrome-1; Short=agCRY1
gi|78191295|gb|ABB29886.1| cryptochrome 1 [Anopheles gambiae]
gi|157012451|gb|EAA01270.4| AGAP001958-PA [Anopheles gambiae str. PEST]
Length = 545
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 92/133 (69%), Gaps = 2/133 (1%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR +FLLE LADLDRQ + GGQL + +G +++ ++L ELN KLC+EQDC
Sbjct: 51 GTRIVGYNRMKFLLESLADLDRQFRDLGGQLLVFRGDSVTVLRRLFEELNIKKLCYEQDC 110
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG- 122
E +W +RD V K C ++ E VSHTLW+P VIQTNG++PPLTY+M+LHTV+ IG
Sbjct: 111 EPIWKERDDAVAKLCRTMDVRCVENVSHTLWNPIEVIQTNGDIPPLTYQMFLHTVNIIGD 170
Query: 123 -TMHIGYNRFRFL 134
+G F ++
Sbjct: 171 PPRPVGAPNFEYV 183
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 49/72 (68%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
+ +++ GT +GYNR +FLLE LADLDRQ + GGQL + +G +++ ++L EL
Sbjct: 40 FPIFIFDGESAGTRIVGYNRMKFLLESLADLDRQFRDLGGQLLVFRGDSVTVLRRLFEEL 99
Query: 171 NFTKLCFEQDCE 182
N KLC+EQDCE
Sbjct: 100 NIKKLCYEQDCE 111
>gi|386762983|gb|AFJ22638.1| cryptochrome 1 [Agrotis ipsilon]
Length = 528
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 84/119 (70%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD Q K +GG+L +++G P +F++L E KLCFEQDC
Sbjct: 44 GTKLVGYNRMRYLLEALDDLDNQFKKYGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDC 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +W RD VK C E + KE VSHTLW+P+ VI+ NG +PPLTY+M+LHTV+ IG
Sbjct: 104 EPVWRARDDSVKAACKEIGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVTTIG 162
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 43/61 (70%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
GT +GYNR R+LLE L DLD Q K +GG+L +++G P +F++L E KLCFEQDC
Sbjct: 44 GTKLVGYNRMRYLLEALDDLDNQFKKYGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDC 103
Query: 182 E 182
E
Sbjct: 104 E 104
>gi|157104635|ref|XP_001648498.1| DNA photolyase [Aedes aegypti]
gi|122106526|sp|Q17DK5.1|CRY1_AEDAE RecName: Full=Cryptochrome-1
gi|108880271|gb|EAT44496.1| AAEL004146-PA [Aedes aegypti]
Length = 545
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 88/119 (73%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +G+NR +FLLE LADLDRQL+ GGQL++ +G+ +++ ++L ELN KLCFEQDC
Sbjct: 49 GTKLVGFNRMKFLLESLADLDRQLREIGGQLYVFKGNAVNVMRRLFEELNIRKLCFEQDC 108
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +W RD ++ C ++ E VSHTLWDP+ +I+TNG +PPLTY+M+LHTV IG
Sbjct: 109 EPIWKARDDAIQNLCRMMDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQMFLHTVDIIG 167
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 52/72 (72%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
Y +++ GT +G+NR +FLLE LADLDRQL+ GGQL++ +G+ +++ ++L EL
Sbjct: 38 YPIFIFDGESAGTKLVGFNRMKFLLESLADLDRQLREIGGQLYVFKGNAVNVMRRLFEEL 97
Query: 171 NFTKLCFEQDCE 182
N KLCFEQDCE
Sbjct: 98 NIRKLCFEQDCE 109
>gi|307826658|gb|ADN94464.1| cryptochrome [Helicoverpa armigera]
Length = 548
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 83/119 (69%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD Q K GG+L +++G P +F++L E KLCFEQDC
Sbjct: 44 GTKLVGYNRMRYLLEALDDLDSQFKKFGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDC 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +W RD VK C E + +E VSHTLW+PE VI+ NG +PPLTY+M+LHTV+ IG
Sbjct: 104 EPVWRARDDSVKSACKEIGVVCREHVSHTLWEPETVIKANGGIPPLTYQMFLHTVATIG 162
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 42/61 (68%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
GT +GYNR R+LLE L DLD Q K GG+L +++G P +F++L E KLCFEQDC
Sbjct: 44 GTKLVGYNRMRYLLEALDDLDSQFKKFGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDC 103
Query: 182 E 182
E
Sbjct: 104 E 104
>gi|371574660|gb|AEX49898.1| cryptochrome 1 [Helicoverpa armigera]
Length = 528
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 83/119 (69%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD Q K GG+L +++G P +F++L E KLCFEQDC
Sbjct: 44 GTKLVGYNRMRYLLEALDDLDSQFKKFGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDC 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +W RD VK C E + +E VSHTLW+PE VI+ NG +PPLTY+M+LHTV+ IG
Sbjct: 104 EPVWRARDDSVKSACKEIGVVCREHVSHTLWEPETVIKANGGIPPLTYQMFLHTVATIG 162
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 42/61 (68%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
GT +GYNR R+LLE L DLD Q K GG+L +++G P +F++L E KLCFEQDC
Sbjct: 44 GTKLVGYNRMRYLLEALDDLDSQFKKFGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDC 103
Query: 182 E 182
E
Sbjct: 104 E 104
>gi|62001759|gb|AAX58599.1| cryptochrome [Danaus plexippus]
gi|357603254|gb|EHJ63675.1| cryptochrome [Danaus plexippus]
Length = 534
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 84/120 (70%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD+Q + +GG+L +++G P IF++L E LCFEQDC
Sbjct: 44 GTKMVGYNRMRYLLEALNDLDQQFRKYGGKLLMIKGRPDLIFRRLWEEFGIRTLCFEQDC 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGT 123
E +W RD V+ C + ++ +E V+HTLW+P+ VI+ NG +PPLTY+M+LHTV IG
Sbjct: 104 EPIWRPRDASVRALCRDIGVSCREHVAHTLWNPDTVIKANGGIPPLTYQMFLHTVEIIGN 163
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
+ +++ GT +GYNR R+LLE L DLD+Q + +GG+L +++G P IF++L E
Sbjct: 33 FPIFIFDGETAGTKMVGYNRMRYLLEALNDLDQQFRKYGGKLLMIKGRPDLIFRRLWEEF 92
Query: 171 NFTKLCFEQDCEA 183
LCFEQDCE
Sbjct: 93 GIRTLCFEQDCEP 105
>gi|195451205|ref|XP_002072813.1| GK13802 [Drosophila willistoni]
gi|194168898|gb|EDW83799.1| GK13802 [Drosophila willistoni]
Length = 543
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/151 (49%), Positives = 94/151 (62%), Gaps = 9/151 (5%)
Query: 4 GTMHIGYNRFRFLLECLADLD---RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT +GYNR RFLL+ L DLD +Q G+L I QG P IF++L ++L K+CFE
Sbjct: 50 GTKDVGYNRMRFLLDSLQDLDGKVQQATEGRGRLHIFQGQPKEIFRRLHQQLQLKKICFE 109
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
QDCE +W +RD VK C E I E VSHTLWDP VI+TNG +PPLTY+M+LHTV
Sbjct: 110 QDCEPIWSQRDASVKSLCQELGIEWVEMVSHTLWDPHTVIETNGGIPPLTYQMFLHTVEI 169
Query: 121 IG-----TMHIGYNRFRFLLECLADLDRQLK 146
IG T +N F +E +L R+LK
Sbjct: 170 IGLPPRPTNDPNWNNVGF-VEISQELQRELK 199
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 122 GTMHIGYNRFRFLLECLADLD---RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
GT +GYNR RFLL+ L DLD +Q G+L I QG P IF++L ++L K+CFE
Sbjct: 50 GTKDVGYNRMRFLLDSLQDLDGKVQQATEGRGRLHIFQGQPKEIFRRLHQQLQLKKICFE 109
Query: 179 QDCE 182
QDCE
Sbjct: 110 QDCE 113
>gi|210136298|gb|ACJ08741.1| cryptochrome [Neobellieria bullata]
Length = 542
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 87/122 (71%), Gaps = 3/122 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT +GYNR +FLL+ L D++ QL+S G+L+I++G+P+ IF+ L + KLCFE
Sbjct: 45 GTQSVGYNRLKFLLDSLEDINNQLRSVSLSLGRLYIMKGNPVQIFRSLHEQRGIKKLCFE 104
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
QDCE +W++RD VK C + IT E +SHTLWDP+ VI TNG +PPLTY+M+LHTV
Sbjct: 105 QDCEPIWNRRDNAVKNLCHDLGITCIERISHTLWDPKKVINTNGGIPPLTYQMFLHTVQI 164
Query: 121 IG 122
IG
Sbjct: 165 IG 166
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 178
GT +GYNR +FLL+ L D++ QL+S G+L+I++G+P+ IF+ L + KLCFE
Sbjct: 45 GTQSVGYNRLKFLLDSLEDINNQLRSVSLSLGRLYIMKGNPVQIFRSLHEQRGIKKLCFE 104
Query: 179 QDCEA 183
QDCE
Sbjct: 105 QDCEP 109
>gi|284506739|dbj|BAI67363.1| cryptochrome [Bactrocera cucurbitae]
Length = 547
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 85/126 (67%), Gaps = 6/126 (4%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSH------GGQLFIVQGSPISIFQKLKRELNFTKL 57
GT +GYNR FLL LAD+D+QLK+ G+L++ QG+P ++F++L K+
Sbjct: 47 GTKTVGYNRMSFLLNSLADIDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKI 106
Query: 58 CFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT 117
CFEQDCE +W++RD V+ C + +I E VSHTLWDP VI TNG +PPLTY+M+LHT
Sbjct: 107 CFEQDCEPIWNRRDDSVRSLCNDLDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQMFLHT 166
Query: 118 VSCIGT 123
V IG
Sbjct: 167 VEIIGV 172
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 6/76 (7%)
Query: 113 MYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSH------GGQLFIVQGSPISIFQKL 166
+++ GT +GYNR FLL LAD+D+QLK+ G+L++ QG+P ++F++L
Sbjct: 38 LFIFDGESAGTKTVGYNRMSFLLNSLADIDKQLKAIRGASDISGKLYLFQGNPATVFRRL 97
Query: 167 KRELNFTKLCFEQDCE 182
K+CFEQDCE
Sbjct: 98 SEYYRLNKICFEQDCE 113
>gi|284506737|dbj|BAI67362.1| cryptochrome [Bactrocera cucurbitae]
Length = 547
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 85/126 (67%), Gaps = 6/126 (4%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSH------GGQLFIVQGSPISIFQKLKRELNFTKL 57
GT +GYNR FLL LAD+D+QLK+ G+L++ QG+P ++F++L K+
Sbjct: 47 GTKTVGYNRMSFLLNSLADIDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKI 106
Query: 58 CFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT 117
CFEQDCE +W++RD V+ C + +I E VSHTLWDP VI TNG +PPLTY+M+LHT
Sbjct: 107 CFEQDCEPIWNRRDDSVRSLCNDLDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQMFLHT 166
Query: 118 VSCIGT 123
V IG
Sbjct: 167 VEIIGV 172
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 6/76 (7%)
Query: 113 MYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSH------GGQLFIVQGSPISIFQKL 166
+++ GT +GYNR FLL LAD+D+QLK+ G+L++ QG+P ++F++L
Sbjct: 38 LFIFDGESAGTKTVGYNRMSFLLNSLADIDKQLKAIRGASDISGKLYLFQGNPATVFRRL 97
Query: 167 KRELNFTKLCFEQDCE 182
K+CFEQDCE
Sbjct: 98 SEYYRLNKICFEQDCE 113
>gi|24648152|ref|NP_732407.1| cryptochrome [Drosophila melanogaster]
gi|74960862|sp|O77059.1|CRY1_DROME RecName: Full=Cryptochrome-1; Short=DmCRY1; Short=dcry; AltName:
Full=Blue light photoreceptor
gi|3724370|dbj|BAA33787.1| blue-light receptor [Drosophila melanogaster]
gi|3983154|gb|AAC83828.1| cryptochrome [Drosophila melanogaster]
gi|7300494|gb|AAF55649.1| cryptochrome [Drosophila melanogaster]
gi|15291339|gb|AAK92938.1| GH16672p [Drosophila melanogaster]
gi|220945540|gb|ACL85313.1| cry-PA [synthetic construct]
gi|220955344|gb|ACL90215.1| cry-PA [synthetic construct]
Length = 542
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 88/122 (72%), Gaps = 3/122 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIE 107
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
QDCE +W++RD+ ++ C E NI E VSHTLWDP++VI+TNG +PPLTY+M+LHTV
Sbjct: 108 QDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQI 167
Query: 121 IG 122
IG
Sbjct: 168 IG 169
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 178
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIE 107
Query: 179 QDCE 182
QDCE
Sbjct: 108 QDCE 111
>gi|406855882|pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome
gi|406855883|pdb|4GU5|B Chain B, Structure Of Full-Length Drosophila Cryptochrome
Length = 539
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 88/122 (72%), Gaps = 3/122 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIE 107
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
QDCE +W++RD+ ++ C E NI E VSHTLWDP++VI+TNG +PPLTY+M+LHTV
Sbjct: 108 QDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQI 167
Query: 121 IG 122
IG
Sbjct: 168 IG 169
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 178
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIE 107
Query: 179 QDCE 182
QDCE
Sbjct: 108 QDCE 111
>gi|3986298|dbj|BAA35000.1| blue light photoreceptor [Drosophila melanogaster]
Length = 542
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 88/122 (72%), Gaps = 3/122 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIE 107
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
QDCE +W++RD+ ++ C E NI E VSHTLWDP++VI+TNG +PPLTY+M+LHTV
Sbjct: 108 QDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQI 167
Query: 121 IG 122
IG
Sbjct: 168 IG 169
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 178
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIE 107
Query: 179 QDCE 182
QDCE
Sbjct: 108 QDCE 111
>gi|51944883|gb|AAU14170.1| cryptochrome [Bactrocera tryoni]
Length = 547
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 85/126 (67%), Gaps = 6/126 (4%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSH------GGQLFIVQGSPISIFQKLKRELNFTKL 57
GT +GYNR FLL LA++D+QLK+ G+L++ QG+P ++F++L K+
Sbjct: 47 GTKTVGYNRMSFLLNSLAEIDKQLKAIRGASDIAGKLYLFQGNPTTVFRRLNEYYRLNKI 106
Query: 58 CFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT 117
CFEQDCE +W++RD V+ C + +I E VSHTLWDP VI TNG +PPLTY+M+LHT
Sbjct: 107 CFEQDCEPIWNRRDDSVRALCNDLDIEAVEKVSHTLWDPRTVISTNGRIPPLTYQMFLHT 166
Query: 118 VSCIGT 123
V IG
Sbjct: 167 VEIIGA 172
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 6/76 (7%)
Query: 113 MYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSH------GGQLFIVQGSPISIFQKL 166
+++ GT +GYNR FLL LA++D+QLK+ G+L++ QG+P ++F++L
Sbjct: 38 LFIFDGESAGTKTVGYNRMSFLLNSLAEIDKQLKAIRGASDIAGKLYLFQGNPTTVFRRL 97
Query: 167 KRELNFTKLCFEQDCE 182
K+CFEQDCE
Sbjct: 98 NEYYRLNKICFEQDCE 113
>gi|195353691|ref|XP_002043337.1| GM26830 [Drosophila sechellia]
gi|194127451|gb|EDW49494.1| GM26830 [Drosophila sechellia]
Length = 542
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 88/122 (72%), Gaps = 3/122 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L +L ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQLRLHRICIE 107
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
QDCE +W++RD+ ++ C E +I E VSHTLWDP++VI+TNG +PPLTY+M+LHTV
Sbjct: 108 QDCEPIWNERDESIRSLCRELSIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQI 167
Query: 121 IG 122
IG
Sbjct: 168 IG 169
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 178
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L +L ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQLRLHRICIE 107
Query: 179 QDCE 182
QDCE
Sbjct: 108 QDCE 111
>gi|195497880|ref|XP_002096288.1| GE25590 [Drosophila yakuba]
gi|194182389|gb|EDW96000.1| GE25590 [Drosophila yakuba]
Length = 542
Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 88/122 (72%), Gaps = 3/122 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P +IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPANIFRRLHEQVRLHRICIE 107
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
QDCE +W+ RD+ ++ C E NI E VSHTLWDP++VI+TNG +PPLTY+M+LHTV
Sbjct: 108 QDCEPIWNDRDESIRFLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQI 167
Query: 121 IG 122
IG
Sbjct: 168 IG 169
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 178
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P +IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPANIFRRLHEQVRLHRICIE 107
Query: 179 QDCE 182
QDCE
Sbjct: 108 QDCE 111
>gi|195569723|ref|XP_002102858.1| GD19278 [Drosophila simulans]
gi|194198785|gb|EDX12361.1| GD19278 [Drosophila simulans]
Length = 542
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 88/122 (72%), Gaps = 3/122 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIE 107
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
QDCE +W++RD+ ++ C E +I E VSHTLWDP++VI+TNG +PPLTY+M+LHTV
Sbjct: 108 QDCEPIWNERDENIRSLCRELSIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQI 167
Query: 121 IG 122
IG
Sbjct: 168 IG 169
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 178
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIE 107
Query: 179 QDCE 182
QDCE
Sbjct: 108 QDCE 111
>gi|195107460|ref|XP_001998330.1| GI23904 [Drosophila mojavensis]
gi|193914924|gb|EDW13791.1| GI23904 [Drosophila mojavensis]
Length = 539
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 82/122 (67%), Gaps = 3/122 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+DRQL+ G L I +G P+ IF++L + K+C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDRQLQEATEGRGGLLICEGQPVHIFRRLHEHVGLHKICVE 107
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
QDCE +W++RD+ VK C E I E VSHTLWDP VI TNG + PLTY+M+LHTV
Sbjct: 108 QDCEPIWNERDEAVKSLCRELGIEYVEKVSHTLWDPRTVIDTNGGIAPLTYQMFLHTVQI 167
Query: 121 IG 122
IG
Sbjct: 168 IG 169
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 178
GT ++GYNR RFLL+ L D+DRQL+ G L I +G P+ IF++L + K+C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDRQLQEATEGRGGLLICEGQPVHIFRRLHEHVGLHKICVE 107
Query: 179 QDCE 182
QDCE
Sbjct: 108 QDCE 111
>gi|194900020|ref|XP_001979555.1| GG23184 [Drosophila erecta]
gi|190651258|gb|EDV48513.1| GG23184 [Drosophila erecta]
Length = 542
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 85/122 (69%), Gaps = 3/122 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D QL+ G+L + +G P IF++L ++ +LC E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQEATDGRGRLLVFEGEPAFIFRRLHEQVRLHRLCIE 107
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
QDCE +W+ RD+ ++ C E I E VSHTLWDP++VI+TNG +PPLTY+M+LHTV
Sbjct: 108 QDCEPIWNHRDETIRALCRELGIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQI 167
Query: 121 IG 122
IG
Sbjct: 168 IG 169
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 178
GT ++GYNR RFLL+ L D+D QL+ G+L + +G P IF++L ++ +LC E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQEATDGRGRLLVFEGEPAFIFRRLHEQVRLHRLCIE 107
Query: 179 QDCE 182
QDCE
Sbjct: 108 QDCE 111
>gi|195157984|ref|XP_002019874.1| GL12637 [Drosophila persimilis]
gi|198455482|ref|XP_001360014.2| GA17677 [Drosophila pseudoobscura pseudoobscura]
gi|205696352|sp|Q293P8.2|CRY1_DROPS RecName: Full=Cryptochrome-1
gi|194116465|gb|EDW38508.1| GL12637 [Drosophila persimilis]
gi|198133263|gb|EAL29166.2| GA17677 [Drosophila pseudoobscura pseudoobscura]
Length = 540
Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 84/123 (68%), Gaps = 3/123 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT +GYNR RFLL+ L DLD QL+S G+LF+ +G P IF++L ++ K+C E
Sbjct: 48 GTKSVGYNRMRFLLDSLQDLDEQLQSATEGRGRLFVFEGEPTLIFRRLHEQVRLHKICAE 107
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
DCE +W++RD+ + C E I E VSHTLWDP +VI+TNG +PPLTY+M+LHTV
Sbjct: 108 LDCEPIWNERDESARLLCRELGIEYVEKVSHTLWDPRLVIETNGGIPPLTYQMFLHTVQI 167
Query: 121 IGT 123
IG
Sbjct: 168 IGV 170
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 178
GT +GYNR RFLL+ L DLD QL+S G+LF+ +G P IF++L ++ K+C E
Sbjct: 48 GTKSVGYNRMRFLLDSLQDLDEQLQSATEGRGRLFVFEGEPTLIFRRLHEQVRLHKICAE 107
Query: 179 QDCE 182
DCE
Sbjct: 108 LDCE 111
>gi|194744725|ref|XP_001954843.1| GF16541 [Drosophila ananassae]
gi|190627880|gb|EDV43404.1| GF16541 [Drosophila ananassae]
Length = 542
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 101/175 (57%), Gaps = 11/175 (6%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKS---HGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D Q+++ G+L + +G P IF++L +L K+C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQIQTLTDGRGRLLLFEGKPEHIFRRLHEQLRLHKICLE 107
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
QDCE +W+ RD+ ++ C E I E VSHTLW+P+ VI+TNG +PPLTY+M+LHTV
Sbjct: 108 QDCEPIWNHRDETIRSLCHELGIEFVEKVSHTLWNPQSVIETNGGIPPLTYQMFLHTVQI 167
Query: 121 IGTMHIGYNRFRFLLECLADLDRQLKSHGGQL--------FIVQGSPISIFQKLK 167
+G N R +D +L + G L F V G + K++
Sbjct: 168 LGLPPRPVNDARLEDASFVQMDPELLRNLGYLEQIPTPEHFNVYGDNMGFLSKIR 222
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKS---HGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
GT ++GYNR RFLL+ L D+D Q+++ G+L + +G P IF++L +L K+C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQIQTLTDGRGRLLLFEGKPEHIFRRLHEQLRLHKICLE 107
Query: 179 QDCE 182
QDCE
Sbjct: 108 QDCE 111
>gi|195389935|ref|XP_002053627.1| GJ24000 [Drosophila virilis]
gi|194151713|gb|EDW67147.1| GJ24000 [Drosophila virilis]
Length = 539
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 79/122 (64%), Gaps = 3/122 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT +GYNR RFLL+ L D+D QL+ G L + QG P IF++L + K+C E
Sbjct: 48 GTKSVGYNRMRFLLDSLQDIDMQLQKATEGRGGLLMCQGQPTQIFRRLHERVRLHKICVE 107
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
QDCE +W++RD+ K C E NI E VSHTLWDP VI TNG + PLTY+M+LHTV
Sbjct: 108 QDCEPIWNERDEATKSLCRELNIEYVEKVSHTLWDPRTVIDTNGGIAPLTYQMFLHTVQI 167
Query: 121 IG 122
IG
Sbjct: 168 IG 169
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 178
GT +GYNR RFLL+ L D+D QL+ G L + QG P IF++L + K+C E
Sbjct: 48 GTKSVGYNRMRFLLDSLQDIDMQLQKATEGRGGLLMCQGQPTQIFRRLHERVRLHKICVE 107
Query: 179 QDCE 182
QDCE
Sbjct: 108 QDCE 111
>gi|195055524|ref|XP_001994667.1| GH17366 [Drosophila grimshawi]
gi|193892430|gb|EDV91296.1| GH17366 [Drosophila grimshawi]
Length = 539
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLK--SHG-GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT +GYNR RFLL+ L D+D+QLK S G G L I +G P IF++L ++ K+C E
Sbjct: 48 GTKSVGYNRMRFLLDSLDDIDKQLKEVSDGQGGLLICEGQPTDIFRRLHDQVRLHKICVE 107
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
DCE +W++RD+ + C E I E VSHTLWDP VI TNG + PLTY+M+LHTV
Sbjct: 108 LDCEPIWNERDEAINNLCRELGIEYVEMVSHTLWDPRTVIDTNGGIAPLTYQMFLHTVHI 167
Query: 121 IG 122
IG
Sbjct: 168 IG 169
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLK--SHG-GQLFIVQGSPISIFQKLKRELNFTKLCFE 178
GT +GYNR RFLL+ L D+D+QLK S G G L I +G P IF++L ++ K+C E
Sbjct: 48 GTKSVGYNRMRFLLDSLDDIDKQLKEVSDGQGGLLICEGQPTDIFRRLHDQVRLHKICVE 107
Query: 179 QDCE 182
DCE
Sbjct: 108 LDCE 111
>gi|390351006|ref|XP_786331.2| PREDICTED: cryptochrome-1-like [Strongylocentrotus purpuratus]
Length = 439
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 79/119 (66%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT GYNR+RFL +CL DLD QLK+ GG+LF+ G P IF+++ E L FE D
Sbjct: 44 GTKTSGYNRWRFLHDCLVDLDEQLKAAGGRLFVFHGDPCLIFKEMFLEWGVRYLTFESDP 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +W +RD++VK C E + E VSHTLW+P+++I+ NG PP+TY M++ V+ IG
Sbjct: 104 EPIWTERDRRVKALCKEMKVECIERVSHTLWNPDIIIEKNGGTPPITYSMFMECVTEIG 162
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
Y +++ GT GYNR+RFL +CL DLD QLK+ GG+LF+ G P IF+++ E
Sbjct: 33 YPVFIFDNEVAGTKTSGYNRWRFLHDCLVDLDEQLKAAGGRLFVFHGDPCLIFKEMFLEW 92
Query: 171 NFTKLCFEQDCEA 183
L FE D E
Sbjct: 93 GVRYLTFESDPEP 105
>gi|257359518|gb|ACV53158.1| cryptochrome-like protein [Crassostrea gigas]
Length = 393
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 76/119 (63%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT GYNRFRFLLECL DLD+ LK+ G +L+ QG P I ++L E TK+ FE D
Sbjct: 32 GTKTAGYNRFRFLLECLQDLDKNLKAAGTRLYCFQGQPTDILERLIEEWGVTKVTFEADP 91
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +W +RD+ V++ + N+ E VSHTLWDP +I+ NG PPLT+ ++ S IG
Sbjct: 92 EPIWQERDRLVRELLDKKNVQCVEKVSHTLWDPYEIIENNGGSPPLTFSLFNLVTSTIG 150
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
Y +++ GT GYNRFRFLLECL DLD+ LK+ G +L+ QG P I ++L E
Sbjct: 21 YPVFIFDGEVAGTKTAGYNRFRFLLECLQDLDKNLKAAGTRLYCFQGQPTDILERLIEEW 80
Query: 171 NFTKLCFEQDCEA 183
TK+ FE D E
Sbjct: 81 GVTKVTFEADPEP 93
>gi|289741509|gb|ADD19502.1| deoxyribodipyrimidine photolyase/cryptochrome [Glossina morsitans
morsitans]
Length = 536
Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 80/119 (67%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT GYNR RFLL+ L DLD Q + G+L+ QG+P +IF++L KLC EQDC
Sbjct: 45 GTKCTGYNRLRFLLDSLRDLDDQFRCQRGRLYTFQGNPTTIFKELHECFGINKLCVEQDC 104
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +W++RD VK C E I E +SHTLW+P VIQTNG +PPLTY+M+LHTV IG
Sbjct: 105 EPIWNRRDNDVKVLCNELGIKWVEKISHTLWNPRQVIQTNGGIPPLTYQMFLHTVQVIG 163
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 39/61 (63%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
GT GYNR RFLL+ L DLD Q + G+L+ QG+P +IF++L KLC EQDC
Sbjct: 45 GTKCTGYNRLRFLLDSLRDLDDQFRCQRGRLYTFQGNPTTIFKELHECFGINKLCVEQDC 104
Query: 182 E 182
E
Sbjct: 105 E 105
>gi|283476381|emb|CAY26038.1| chryptochrome 1 [Acyrthosiphon pisum]
Length = 553
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
GYN RFLLE L DL+ L GG+L+I+QG+P++IF+ +K ++ + +EQDC L
Sbjct: 47 GYNPMRFLLESLIDLNNNLALVGGRLYILQGNPVNIFKMIKEKIGLHFITYEQDCAHLGR 106
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
RD+KVK +C EN+I E VSHTLW+P+ +I+ NG VPP T+K + +T IG
Sbjct: 107 TRDEKVKSFCDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQNTAKQIG 160
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 93 LWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQL 152
L D +I+ + N L +++ + GYN RFLLE L DL+ L GG+L
Sbjct: 14 LHDNPALIEAHNNAEKLI-TLFIFDETTFNPKWYGYNPMRFLLESLIDLNNNLALVGGRL 72
Query: 153 FIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+I+QG+P++IF+ +K ++ + +EQDC
Sbjct: 73 YILQGNPVNIFKMIKEKIGLHFITYEQDC 101
>gi|283806550|ref|NP_001164532.1| chryptochrome 1 [Acyrthosiphon pisum]
Length = 553
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 77/114 (67%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
GYN RFLL L DL+ L GG+L+I+QG+P++IF+ +K ++ + +EQDC L
Sbjct: 47 GYNPMRFLLXSLIDLNNNLALVGGRLYILQGNPVNIFKMIKEKIGLHFITYEQDCAHLGR 106
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
RD+KVK +C EN+I E VSHTLW+P+ +I+ NG VPP T+K + +T IG
Sbjct: 107 TRDEKVKSFCDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQNTAKQIG 160
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 93 LWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQL 152
L D +I+ + N L +++ + GYN RFLL L DL+ L GG+L
Sbjct: 14 LHDNPALIEAHNNAEKLI-TLFIFDETTFNPKWYGYNPMRFLLXSLIDLNNNLALVGGRL 72
Query: 153 FIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+I+QG+P++IF+ +K ++ + +EQDC
Sbjct: 73 YILQGNPVNIFKMIKEKIGLHFITYEQDC 101
>gi|321466446|gb|EFX77441.1| CRY-D [Daphnia pulex]
Length = 525
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 10 YNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHK 69
Y+ FLLECL DL+ L+S G +L + QG P+ +F+ L KLCF QDCE ++H+
Sbjct: 46 YHMNGFLLECLHDLNESLESVGTKLHVFQGCPLEVFRHLHNIKPINKLCFIQDCEPIFHE 105
Query: 70 RDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
RD K C+E +I V E V+HTLWDP +I +NG PPLTY+M++H +G
Sbjct: 106 RDIAAKNLCSELDIEVYEHVAHTLWDPMDIIASNGGTPPLTYEMFVHVAMSVG 158
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 128 YNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
Y+ FLLECL DL+ L+S G +L + QG P+ +F+ L KLCF QDCE
Sbjct: 46 YHMNGFLLECLHDLNESLESVGTKLHVFQGCPLEVFRHLHNIKPINKLCFIQDCEP 101
>gi|443724902|gb|ELU12703.1| hypothetical protein CAPTEDRAFT_226189 [Capitella teleta]
Length = 564
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 74/119 (62%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT GYNR RFL +CL DLD+ + GG+L+I +G+P+ I L E TKL FEQD
Sbjct: 67 GTGTAGYNRMRFLHQCLEDLDKSFQKFGGRLYIFKGNPVDILAALFDEWQVTKLTFEQDP 126
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +W RD KVK C + ++T E +SHTL+ P+ VI+ NG PP T+ + ++ +G
Sbjct: 127 EPIWEDRDNKVKDLCMKRDVTYVERISHTLFHPDDVIEANGGNPPHTFSLMKQVLNMLG 185
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
Y +++ GT GYNR RFL +CL DLD+ + GG+L+I +G+P+ I L E
Sbjct: 56 YPIFILDGEVAGTGTAGYNRMRFLHQCLEDLDKSFQKFGGRLYIFKGNPVDILAALFDEW 115
Query: 171 NFTKLCFEQDCEA 183
TKL FEQD E
Sbjct: 116 QVTKLTFEQDPEP 128
>gi|348553110|ref|XP_003462370.1| PREDICTED: cryptochrome-1-like [Cavia porcellus]
Length = 675
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 77/125 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
T+ C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +
Sbjct: 30 TIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E N TKL E D E +
Sbjct: 90 EWNITKLSIEYDSEPF 105
>gi|339649212|gb|AEJ87227.1| putative light-receptive cryptochrome [Platynereis dumerilii]
Length = 365
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 69/119 (57%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT + Y R +FLLECL DLD LK HGG+L++V+G + ++L E T++ E D
Sbjct: 6 GTKLVSYPRMKFLLECLKDLDDSLKKHGGRLYVVKGPSDVVIKQLIEEWGVTRVTCEIDP 65
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +W RDK VK CA + ++ SH LWDP+ V NG PP TYK++ +G
Sbjct: 66 EPIWQPRDKAVKDLCATKGVKWFDYNSHLLWDPKAVCDANGGRPPHTYKLFCQVTDLLG 124
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
GT + Y R +FLLECL DLD LK HGG+L++V+G + ++L E T++ E D
Sbjct: 6 GTKLVSYPRMKFLLECLKDLDDSLKKHGGRLYVVKGPSDVVIKQLIEEWGVTRVTCEIDP 65
Query: 182 EA 183
E
Sbjct: 66 EP 67
>gi|406507545|gb|AFS34616.1| cryptochrome 1, partial [Clunio marinus]
Length = 378
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 78/120 (65%), Gaps = 3/120 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQ-LFIVQGSPISIFQKLKRELNFTKLCFEQD 62
GT +GYNR +FLLE L DLD Q K G LFI QG P IFQ L + K+CFEQD
Sbjct: 47 GTKDVGYNRMKFLLESLLDLDEQFKQLGAPGLFIFQGKPTEIFQNLHDNIGINKICFEQD 106
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
CE +++RD ++K E I V E VSHTLW+PE +I+ NG PLTY+M LHTV+ +G
Sbjct: 107 CE--YNERDNEIKYLSRELGIEVVEKVSHTLWNPEDIIRINGGFAPLTYQMLLHTVNVLG 164
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQ-LFIVQGSPISIFQKLKRE 169
Y +++ GT +GYNR +FLLE L DLD Q K G LFI QG P IFQ L
Sbjct: 36 YPVFIFDGESAGTKDVGYNRMKFLLESLLDLDEQFKQLGAPGLFIFQGKPTEIFQNLHDN 95
Query: 170 LNFTKLCFEQDCE 182
+ K+CFEQDCE
Sbjct: 96 IGINKICFEQDCE 108
>gi|297692835|ref|XP_002823736.1| PREDICTED: cryptochrome-1 [Pongo abelii]
Length = 586
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDASLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDASLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|75048080|sp|Q8WP19.1|CRY1_MACFA RecName: Full=Cryptochrome-1
gi|17026058|dbj|BAB72089.1| cryptochrome 1 [Macaca fascicularis]
Length = 586
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|4758072|ref|NP_004066.1| cryptochrome-1 [Homo sapiens]
gi|332241714|ref|XP_003270025.1| PREDICTED: cryptochrome-1 [Nomascus leucogenys]
gi|74735764|sp|Q16526.1|CRY1_HUMAN RecName: Full=Cryptochrome-1
gi|1304107|dbj|BAA12068.1| photolyase [Homo sapiens]
gi|1313902|dbj|BAA12710.1| photolyase homolog [Homo sapiens]
gi|22539647|gb|AAH30519.1| Cryptochrome 1 (photolyase-like) [Homo sapiens]
gi|119618201|gb|EAW97795.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|119618203|gb|EAW97797.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|121647009|gb|ABM64209.1| photolyase-like cryptochrome 1 [Homo sapiens]
gi|158254536|dbj|BAF83241.1| unnamed protein product [Homo sapiens]
gi|261858374|dbj|BAI45709.1| cryptochrome 1 [synthetic construct]
gi|325464291|gb|ADZ15916.1| cryptochrome 1 (photolyase-like) [synthetic construct]
Length = 586
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|302564841|ref|NP_001181088.1| cryptochrome-1 [Macaca mulatta]
gi|402887532|ref|XP_003907145.1| PREDICTED: cryptochrome-1 [Papio anubis]
gi|355564646|gb|EHH21146.1| hypothetical protein EGK_04148 [Macaca mulatta]
gi|355786488|gb|EHH66671.1| hypothetical protein EGM_03711 [Macaca fascicularis]
gi|380809804|gb|AFE76777.1| cryptochrome-1 [Macaca mulatta]
gi|383415927|gb|AFH31177.1| cryptochrome-1 [Macaca mulatta]
gi|384945408|gb|AFI36309.1| cryptochrome-1 [Macaca mulatta]
Length = 586
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|432094365|gb|ELK25942.1| Cryptochrome-1 [Myotis davidii]
Length = 535
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDSNLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVQISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDSNLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|73969270|ref|XP_862753.1| PREDICTED: cryptochrome-1 isoform 2 [Canis lupus familiaris]
Length = 587
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|114646730|ref|XP_509339.2| PREDICTED: cryptochrome-1 [Pan troglodytes]
gi|397525251|ref|XP_003832588.1| PREDICTED: cryptochrome-1 [Pan paniscus]
gi|410216796|gb|JAA05617.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410256668|gb|JAA16301.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410295158|gb|JAA26179.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410354849|gb|JAA44028.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
Length = 586
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|440907719|gb|ELR57829.1| Cryptochrome-1 [Bos grunniens mutus]
Length = 589
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|410965445|ref|XP_003989258.1| PREDICTED: cryptochrome-1 [Felis catus]
Length = 587
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|291389942|ref|XP_002711467.1| PREDICTED: cryptochrome 1 (photolyase-like) [Oryctolagus cuniculus]
Length = 587
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 77/125 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N T+L E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITRLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N T+L E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITRLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|403275987|ref|XP_003929699.1| PREDICTED: cryptochrome-1 [Saimiri boliviensis boliviensis]
Length = 586
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|417403044|gb|JAA48347.1| Putative deoxyribodipyrimidine photolyase/cryptochrome [Desmodus
rotundus]
Length = 587
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|351713396|gb|EHB16315.1| Cryptochrome-1 [Heterocephalus glaber]
Length = 591
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 102 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 161
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 162 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 221
Query: 122 GTMHI 126
+ I
Sbjct: 222 EPLEI 226
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 104 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 163
Query: 182 EAY 184
E +
Sbjct: 164 EPF 166
>gi|301784579|ref|XP_002927704.1| PREDICTED: cryptochrome-1-like [Ailuropoda melanoleuca]
gi|281347021|gb|EFB22605.1| hypothetical protein PANDA_017512 [Ailuropoda melanoleuca]
Length = 587
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|296212792|ref|XP_002752992.1| PREDICTED: cryptochrome-1 [Callithrix jacchus]
Length = 586
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|354486342|ref|XP_003505340.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-1-like [Cricetulus
griseus]
Length = 583
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 37 FAGSSNVGINRWRFLLQCLEDLDSNLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 96
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + VS
Sbjct: 97 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVS 154
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 39 GSSNVGINRWRFLLQCLEDLDSNLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 98
Query: 182 EAY 184
E +
Sbjct: 99 EPF 101
>gi|311255201|ref|XP_003126127.1| PREDICTED: cryptochrome-1 [Sus scrofa]
Length = 588
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|157427956|ref|NP_001098885.1| cryptochrome-1 [Bos taurus]
gi|157278893|gb|AAI34487.1| CRY1 protein [Bos taurus]
Length = 587
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|87280964|gb|ABD36589.1| cryptochrome 1 [Podarcis siculus]
Length = 618
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 74/118 (62%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 113 MYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 172
+Y+ S G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N
Sbjct: 34 VYILDPSFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNI 93
Query: 173 TKLCFEQDCEAY 184
TKL E D E +
Sbjct: 94 TKLSIEYDSEPF 105
>gi|149742994|ref|XP_001499263.1| PREDICTED: cryptochrome-1 [Equus caballus]
Length = 587
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|444511893|gb|ELV09967.1| Cryptochrome-1 [Tupaia chinensis]
Length = 463
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|193211372|ref|NP_001123207.1| cryptochrome-1 [Ovis aries]
gi|152940829|gb|ABS44879.1| cryptochrome 1 [Ovis aries]
Length = 587
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIIRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|6681031|ref|NP_031797.1| cryptochrome-1 [Mus musculus]
gi|81882230|sp|P97784.1|CRY1_MOUSE RecName: Full=Cryptochrome-1
gi|5081813|gb|AAD39548.1|AF156986_1 cryptochrome 1 [Mus musculus]
gi|1816439|dbj|BAA19175.1| photolyase/blue-light receptor homolog [Mus musculus]
gi|18380944|gb|AAH22174.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
gi|55716088|gb|AAH85499.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
gi|74194028|dbj|BAE36931.1| unnamed protein product [Mus musculus]
gi|148689469|gb|EDL21416.1| cryptochrome 1 (photolyase-like) [Mus musculus]
Length = 606
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + VS
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVS 158
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|296487421|tpg|DAA29534.1| TPA: cryptochrome 1 (photolyase-like) [Bos taurus]
Length = 543
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|149067374|gb|EDM17107.1| cryptochrome 1 (photolyase-like) [Rattus norvegicus]
Length = 555
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + VS
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVS 158
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|80861398|ref|NP_942045.2| cryptochrome-1 [Rattus norvegicus]
gi|118572250|sp|Q32Q86.1|CRY1_RAT RecName: Full=Cryptochrome-1
gi|78395116|gb|AAI07678.1| Cryptochrome 1 (photolyase-like) [Rattus norvegicus]
Length = 588
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + VS
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVS 158
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|33333729|gb|AAQ11980.1| cryptochrome 1 [Rattus norvegicus]
Length = 588
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + VS
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVS 158
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|426374041|ref|XP_004053891.1| PREDICTED: cryptochrome-1 [Gorilla gorilla gorilla]
Length = 583
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|395819912|ref|XP_003783322.1| PREDICTED: cryptochrome-1 [Otolemur garnettii]
Length = 587
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N T+L E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITRLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N T+L E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITRLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|33309543|gb|AAQ03212.1|AF410956_1 cryptochrome 1-like protein [Passer domesticus]
Length = 183
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E
Sbjct: 33 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEY 92
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 93 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 150
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +
Sbjct: 22 TVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 81
Query: 169 ELNFTKLCFEQDCEAY 184
E N KL E D E +
Sbjct: 82 EWNIAKLSIEYDSEPF 97
>gi|327272396|ref|XP_003220971.1| PREDICTED: cryptochrome-1-like isoform 2 [Anolis carolinensis]
Length = 589
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 77/125 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK +E + V +SHTL++ + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISRM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E N TKL E D E +
Sbjct: 90 EWNITKLSIEYDSEPF 105
>gi|327272394|ref|XP_003220970.1| PREDICTED: cryptochrome-1-like isoform 1 [Anolis carolinensis]
Length = 621
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 77/125 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK +E + V +SHTL++ + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISRM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E N TKL E D E +
Sbjct: 90 EWNITKLSIEYDSEPF 105
>gi|390355184|ref|XP_785873.3| PREDICTED: cryptochrome-1-like [Strongylocentrotus purpuratus]
Length = 754
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 71/121 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ G NR+RFLLECL DLD L+ +LF+++G P + +L +E T+L FE+
Sbjct: 56 FAGSCSKGVNRWRFLLECLEDLDSSLRKLNSRLFLIRGQPADVLPRLFKEWKVTQLSFEE 115
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RDK + E + V VSHTL+DP+ ++ N N PPLTYK + +S +
Sbjct: 116 DSEPFGRTRDKAISTLAQEAGVKVISKVSHTLYDPQEILALNNNEPPLTYKRFQDIISLM 175
Query: 122 G 122
G
Sbjct: 176 G 176
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ G NR+RFLLECL DLD L+ +LF+++G P + +L +E T+L FE+D
Sbjct: 58 GSCSKGVNRWRFLLECLEDLDSSLRKLNSRLFLIRGQPADVLPRLFKEWKVTQLSFEEDS 117
Query: 182 EAY 184
E +
Sbjct: 118 EPF 120
>gi|431905253|gb|ELK10298.1| Cryptochrome-1 [Pteropus alecto]
Length = 513
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 75/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|147901097|ref|NP_001081129.1| cryptochrome 1 (photolyase-like) [Xenopus laevis]
gi|47938667|gb|AAH72120.1| Cry1-A protein [Xenopus laevis]
Length = 616
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 DPLEI 165
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E TKL E D E +
Sbjct: 90 EWKITKLSIEYDSEPF 105
>gi|15341190|gb|AAK94665.1| cryptochrome 1 [Xenopus laevis]
Length = 616
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 DPLEI 165
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E TKL E D E +
Sbjct: 90 EWKITKLSIEYDSEPF 105
>gi|344266586|ref|XP_003405361.1| PREDICTED: cryptochrome-1-like [Loxodonta africana]
Length = 583
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E + TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWDITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E + TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWDITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|291290511|dbj|BAI82611.1| cryptochrome 1 [Xenopus (Silurana) tropicalis]
Length = 605
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E TKL E
Sbjct: 34 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKLSIEY 93
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 94 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 153
Query: 122 GTMHI 126
+ I
Sbjct: 154 EPLEI 158
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E TKL E D
Sbjct: 36 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKLSIEYDS 95
Query: 182 EAY 184
E +
Sbjct: 96 EPF 98
>gi|302745164|gb|ADL62685.1| cryptochrome 5, partial [Phreatichthys andruzzii]
Length = 411
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 71/122 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
+P HIG NR+RFL+E L DLD LK +LF+V G P + KL + T+L FE
Sbjct: 41 YPNNTHIGINRWRFLIEALKDLDSSLKKLNSRLFVVSGPPAEVLPKLFEKWKITRLTFEV 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RDK+V K EN + V +SHTL++ + +I+ N PP+TY +L V+ I
Sbjct: 101 DTEPYSQSRDKEVMKLAEENGVEVIPKISHTLYNIDRIIEENNGKPPMTYVRFLSVVNAI 160
Query: 122 GT 123
G+
Sbjct: 161 GS 162
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 40/74 (54%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
Y ++L HIG NR+RFL+E L DLD LK +LF+V G P + KL +
Sbjct: 32 YPLFLLDPWYPNNTHIGINRWRFLIEALKDLDSSLKKLNSRLFVVSGPPAEVLPKLFEKW 91
Query: 171 NFTKLCFEQDCEAY 184
T+L FE D E Y
Sbjct: 92 KITRLTFEVDTEPY 105
>gi|404312667|ref|NP_001017311.2| cryptochrome 1 (photolyase-like) [Xenopus (Silurana) tropicalis]
gi|170287804|gb|AAI61038.1| Unknown (protein for MGC:184712) [Xenopus (Silurana) tropicalis]
Length = 618
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|82091801|sp|Q6ZZY0.1|CRY1_SYLBO RecName: Full=Cryptochrome-1
gi|45535501|emb|CAG14931.1| cryptochrome 1 [Sylvia borin]
Length = 620
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E N KL E D E +
Sbjct: 90 EWNIAKLSIEYDSEPF 105
>gi|118572249|sp|Q5IZC5.2|CRY1_ERIRU RecName: Full=Cryptochrome-1
gi|57233429|gb|AAW48290.1| cryptochrome-1a [Erithacus rubecula]
Length = 620
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E N KL E D E +
Sbjct: 90 EWNIAKLSIEYDSEPF 105
>gi|81864807|sp|Q70AD6.1|CRY1_SPAJD RecName: Full=Cryptochrome-1
gi|44843612|emb|CAE54425.1| sCRY1 protein [Spalax judaei]
Length = 587
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 75/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +L +++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLLVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +L +++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLLVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|57233431|gb|AAW48291.1| cryptochrome-1b [Erithacus rubecula]
Length = 587
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E N KL E D E +
Sbjct: 90 EWNIAKLSIEYDSEPF 105
>gi|110962429|gb|ABH03083.1| cryptochrome 1b [Sylvia borin]
Length = 587
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E N KL E D E +
Sbjct: 90 EWNIAKLSIEYDSEPF 105
>gi|15824991|gb|AAL09563.1|AF363632_1 cryptochrome 1 [Coturnix japonica]
Length = 168
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E + KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWSIAKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIGRISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E + KL E D E +
Sbjct: 90 EWSIAKLSIEYDSEPF 105
>gi|387015300|gb|AFJ49769.1| Cryptochrome-1-like [Crotalus adamanteus]
Length = 622
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N +KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNISKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLATEAGLEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E N +KL E D E +
Sbjct: 90 EWNISKLSIEYDSEPF 105
>gi|432959668|ref|XP_004086356.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 653
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 74/118 (62%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P ++F +L +E ++L FE
Sbjct: 41 FAGSSNVGVNRWRFLLQCLEDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLAMEAGVEVIVKISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P ++F +L +
Sbjct: 30 TVRCVYFLDPWFAGSSNVGVNRWRFLLQCLEDLDANLRKLNSRLFVIRGQPANVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E ++L FE D E +
Sbjct: 90 EWKISRLTFEYDSEPF 105
>gi|348517126|ref|XP_003446086.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 800
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 74/118 (62%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P ++F +L +E ++L FE
Sbjct: 41 FAGSSNVGVNRWRFLLQCLEDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLAMEAGVEVIVKISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P ++F +L +
Sbjct: 30 TVRCVYFLDPWFAGSSNVGVNRWRFLLQCLEDLDANLRKLNSRLFVIRGQPANVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E ++L FE D E +
Sbjct: 90 EWKISRLTFEYDSEPF 105
>gi|45383636|ref|NP_989576.1| cryptochrome-1 [Gallus gallus]
gi|82104700|sp|Q8QG61.1|CRY1_CHICK RecName: Full=Cryptochrome-1
gi|19550963|gb|AAK61385.1| cryptochrome 1 [Gallus gallus]
Length = 621
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E + KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWSIAKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E + KL E D E +
Sbjct: 90 EWSIAKLSIEYDSEPF 105
>gi|76880306|dbj|BAE45919.1| cryptochrome [Hyla japonica]
Length = 377
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E ++L E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKISRLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLASEAAVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E ++L E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKISRLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|432862559|ref|XP_004069915.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 562
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 8/170 (4%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL CL DLD L+ +LF+++G P +F +L +E T+L +E
Sbjct: 41 FAGSSNVGINRWRFLLHCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWQITRLSYEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD ++K +E + V +SHTL+D + +I+ NG PPLTYK + ++ +
Sbjct: 101 DSEPFGKERDAAIQKLASEAAVEVVVRISHTLYDLDRIIELNGGPPPLTYKRFQALINRM 160
Query: 122 GTMHIGYNRFRF--LLECLADLDRQLKSHGGQL------FIVQGSPISIF 163
+ + R + C+ + G L F +G P +++
Sbjct: 161 DAVELPAERITLETMQSCVTPVSENHDDKFGVLSLEELGFETEGLPTAVW 210
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL CL DLD L+ +LF+++G P +F +L +E T+L +E D
Sbjct: 43 GSSNVGINRWRFLLHCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWQITRLSYEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|223647560|gb|ACN10538.1| Cryptochrome-1 [Salmo salar]
Length = 643
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 75/120 (62%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +IF +L ++ N ++L FE
Sbjct: 41 FAGSSNLGVNRWRFLLQCLEDLDSSLRKLNSRLFVIRGQPANIFPRLFKDWNISQLTFEC 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLT+K + V +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVVSRISHTLYDLDKIIELNGGHPPLTFKHFQTLVDSM 160
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +IF +L +
Sbjct: 30 TVRCVYFLDPWFAGSSNLGVNRWRFLLQCLEDLDSSLRKLNSRLFVIRGQPANIFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
+ N ++L FE D E +
Sbjct: 90 DWNISQLTFECDSEPF 105
>gi|321474453|gb|EFX85418.1| DNA photolyase 1 [Daphnia pulex]
Length = 524
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 74/122 (60%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G NR+RFL++ L DLD LK G +LFI++GSP F+K+ +E N KL FE D E
Sbjct: 53 VGPNRWRFLVQSLQDLDDNLKKIGSRLFILKGSPTETFKKVFKEWNVKKLTFEVDIEPYA 112
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIG 127
RD+++KK +++TV VSHT++D E V + NGN PLTY + V+ GT
Sbjct: 113 KTRDEEIKKLADHHSVTVVAKVSHTIYDLEKVFKANGNKAPLTYVKFQSVVAKFGTPEKA 172
Query: 128 YN 129
N
Sbjct: 173 LN 174
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%)
Query: 121 IGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
+ +G NR+RFL++ L DLD LK G +LFI++GSP F+K+ +E N KL FE D
Sbjct: 48 VKNAKVGPNRWRFLVQSLQDLDDNLKKIGSRLFILKGSPTETFKKVFKEWNVKKLTFEVD 107
Query: 181 CEAY 184
E Y
Sbjct: 108 IEPY 111
>gi|399220399|gb|AFP33463.1| cryptochrome 2 [Dicentrarchus labrax]
Length = 668
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 72/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ +G NR+RFLL+CL DLD L+ +LF+++G P ++F +L +E ++L FE
Sbjct: 41 FAGSSSVGVNRWRFLLQCLEDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLAMEAGVEVIVKTSHTLYDLDKIIELNGAQPPLTYKRFQTLIS 158
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ +G NR+RFLL+CL DLD L+ +LF+++G P ++F +L +
Sbjct: 30 TVRCVYFLDPWFAGSSSVGVNRWRFLLQCLEDLDANLRKLNSRLFVIRGQPANVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E ++L FE D E +
Sbjct: 90 EWKISRLTFEYDSEPF 105
>gi|348519202|ref|XP_003447120.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 570
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 77/132 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E +L +E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWQINRLSYEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD ++K E + V +SHTL++ + +I+ NGN PPLTYK + ++ +
Sbjct: 101 DSEPFGKERDAAIQKLANEAGVEVMVRISHTLYNLDKIIELNGNQPPLTYKRFQAVINRM 160
Query: 122 GTMHIGYNRFRF 133
+ + F
Sbjct: 161 DAVEMPAETITF 172
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E +L +E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWQINRLSYEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|18858465|ref|NP_571866.1| cryptochrome-1 [Danio rerio]
gi|8698588|dbj|BAA96848.1| cryptochrome 2a [Danio rerio]
Length = 655
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+V+G P ++F +L +E ++L FE
Sbjct: 41 FAGSSNLGVNRWRFLLQCLDDLDSNLRKLNSRLFVVRGQPANVFPRLFKEWKISRLTFEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK E + V SHTL++ + +I+ NG PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLAMEAGVEVIVKTSHTLYNLDKIIELNGGQPPLTYKRFQTLIS 158
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+V+G P ++F +L +
Sbjct: 30 TVRCVYFLDPWFAGSSNLGVNRWRFLLQCLDDLDSNLRKLNSRLFVVRGQPANVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E ++L FE D E +
Sbjct: 90 EWKISRLTFEYDSEPF 105
>gi|63100688|gb|AAH95305.1| Cry2a protein [Danio rerio]
Length = 658
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+V+G P ++F +L +E ++L FE
Sbjct: 41 FAGSSNLGVNRWRFLLQCLDDLDSNLRKLNSRLFVVRGQPANVFPRLFKEWKISRLTFEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK E + V SHTL++ + +I+ NG PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLAMEAGVEVIVKTSHTLYNLDKIIELNGGQPPLTYKRFQTLIS 158
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+V+G P ++F +L +
Sbjct: 30 TVRCVYFLDPWFAGSSNLGVNRWRFLLQCLDDLDSNLRKLNSRLFVVRGQPANVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E ++L FE D E +
Sbjct: 90 EWKISRLTFEYDSEPF 105
>gi|193211374|ref|NP_001123208.1| cryptochrome-2 [Ovis aries]
gi|156763811|gb|ABS44876.1| cryptochrome 2 [Ovis aries]
Length = 596
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/118 (40%), Positives = 69/118 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLDR L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 63 FAASSSVGINRWRFLLQSLEDLDRSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 122
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 123 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIIS 180
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 116 HTVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLK 167
H V C+ + +G NR+RFLL+ L DLDR L+ +LF+V+G P +F +L
Sbjct: 51 HCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDRSLRKLNSRLFVVRGQPADVFPRLF 110
Query: 168 RELNFTKLCFEQDCEAY 184
+E T+L FE D E +
Sbjct: 111 KEWGVTRLTFEYDSEPF 127
>gi|134032019|ref|NP_001076794.1| cryptochrome 2 [Tribolium castaneum]
gi|133754349|gb|ABO38438.1| cryptochrome 2 [Tribolium castaneum]
gi|270008089|gb|EFA04537.1| cryptochrome 2 [Tribolium castaneum]
Length = 535
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 72/121 (59%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+
Sbjct: 55 FAGSSNVGINKWRFLLQCLEDLDRSLRKLNSRLFVIRGQPADALPKLFKEWGTTALTFEE 114
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + C E I+V + VSHTL+ + +I NG PLTY +L ++C+
Sbjct: 115 DPEPFGGVRDHNLTTLCQELGISVVQKVSHTLYHLQDIIDRNGGRAPLTYHQFLAIIACM 174
Query: 122 G 122
G
Sbjct: 175 G 175
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+D
Sbjct: 57 GSSNVGINKWRFLLQCLEDLDRSLRKLNSRLFVIRGQPADALPKLFKEWGTTALTFEEDP 116
Query: 182 EAY 184
E +
Sbjct: 117 EPF 119
>gi|302745152|gb|ADL62679.1| cryptochrome 1a [Phreatichthys andruzzii]
Length = 623
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L +E N T+L +E
Sbjct: 41 FAGSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNITRLSYEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK E + V +SHTL+D + +I+ NG PLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLIS 158
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 8/77 (10%)
Query: 116 HTVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLK 167
HTV C+ G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L
Sbjct: 29 HTVRCVYILDPWFAGSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLF 88
Query: 168 RELNFTKLCFEQDCEAY 184
+E N T+L +E D E +
Sbjct: 89 KEWNITRLSYEYDSEPF 105
>gi|440895552|gb|ELR47705.1| Cryptochrome-2, partial [Bos grunniens mutus]
Length = 564
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/118 (40%), Positives = 69/118 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLDR L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 31 FAASSSVGINRWRFLLQSLEDLDRSLRKLNSRLFVVRGQPADVFPRLFQEWGVTRLTFEY 90
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 91 DSEPFGKERDTAIMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIIS 148
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 116 HTVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLK 167
H V C+ + +G NR+RFLL+ L DLDR L+ +LF+V+G P +F +L
Sbjct: 19 HCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDRSLRKLNSRLFVVRGQPADVFPRLF 78
Query: 168 RELNFTKLCFEQDCEAY 184
+E T+L FE D E +
Sbjct: 79 QEWGVTRLTFEYDSEPF 95
>gi|383863231|ref|XP_003707085.1| PREDICTED: cryptochrome-1-like [Megachile rotundata]
Length = 589
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 72/120 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+
Sbjct: 59 FAGSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEE 118
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + C E I+V + VSHTL+ + +I+ NG PPLTY + + V+C+
Sbjct: 119 DPEPFGRVRDHNISALCKELGISVVQKVSHTLYKLDEIIEKNGGKPPLTYHQFQNVVACM 178
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+D
Sbjct: 61 GSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDP 120
Query: 182 EAY 184
E +
Sbjct: 121 EPF 123
>gi|356526185|ref|XP_003531700.1| PREDICTED: (6-4)DNA photolyase-like [Glycine max]
Length = 535
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 69/113 (61%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR +FLLECL DLD LK+ G +L I++G P + + +EL+ KLCFE D
Sbjct: 53 PGSSRAGLNRIKFLLECLVDLDLNLKNLGSRLLILKGDPAEVVIRCLKELHVKKLCFEYD 112
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
E + D KVK + I V VSHTL++P +I+ NG PPL+Y+ ++
Sbjct: 113 TEPYYQALDVKVKNFALAAGIEVFSPVSHTLFNPTDIIEKNGGKPPLSYQSFV 165
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
S G+ G NR +FLLECL DLD LK+ G +L I++G P + + +EL+ KLCFE
Sbjct: 51 SAPGSSRAGLNRIKFLLECLVDLDLNLKNLGSRLLILKGDPAEVVIRCLKELHVKKLCFE 110
Query: 179 QDCEAY 184
D E Y
Sbjct: 111 YDTEPY 116
>gi|47215847|emb|CAG02310.1| unnamed protein product [Tetraodon nigroviridis]
Length = 606
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 46/116 (39%), Positives = 69/116 (59%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +I RFLL+CL DLD L+ +LF+++G P ++F +L +E ++L FE D
Sbjct: 10 GTTYISEKNLRFLLQCLEDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEYDS 69
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 70 EPFGKERDAAIKKLAKEAGVEVIVKISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 125
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
GT +I RFLL+CL DLD L+ +LF+++G P ++F +L +E ++L FE D
Sbjct: 10 GTTYISEKNLRFLLQCLEDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEYDS 69
Query: 182 EAY 184
E +
Sbjct: 70 EPF 72
>gi|66910424|gb|AAH97079.1| Cry4 protein [Danio rerio]
Length = 418
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 76/119 (63%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G MH+G R+RFLL+ L DLD +L++ G +LF++ GS +I ++L + T++ ++ +
Sbjct: 44 GAMHMGALRWRFLLQSLEDLDTRLQAIGSRLFVLCGSTANILRELVAQWGITQISYDTEV 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E + + DK ++ EN + VSHTL+D + +++ NG PPLTYK +LH +S +G
Sbjct: 104 EPYYTRMDKDIQTVAQENGLQTYTCVSHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLG 162
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 111 YKMY-LHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE 169
Y +Y L V G MH+G R+RFLL+ L DLD +L++ G +LF++ GS +I ++L +
Sbjct: 32 YPVYVLDRVFLQGAMHMGALRWRFLLQSLEDLDTRLQAIGSRLFVLCGSTANILRELVAQ 91
Query: 170 LNFTKLCFEQDCEAY 184
T++ ++ + E Y
Sbjct: 92 WGITQISYDTEVEPY 106
>gi|334348060|ref|XP_003342014.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-1-like [Monodelphis
domestica]
Length = 585
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 71/118 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ + G N ++FLL+CL DLD L+ +LF+++G P +F +L +E N KL E
Sbjct: 41 FGGSSNFGANEWKFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ + G N ++FLL+CL DLD L+ +LF+++G P +F +L +
Sbjct: 30 TVCCVYIRDPWFGGSSNFGANEWKFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E N KL E D E +
Sbjct: 90 EWNIAKLSIEYDSEPF 105
>gi|380797951|gb|AFE70851.1| cryptochrome-2 isoform 1, partial [Macaca mulatta]
Length = 579
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 48/118 (40%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 46 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 105
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D E +I+ NG PPLTYK + +S
Sbjct: 106 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLERIIELNGQKPPLTYKRFQAIIS 163
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 52 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 110
>gi|390979651|ref|NP_001070765.2| cryptochrome 1a [Danio rerio]
gi|141796163|gb|AAI34839.1| Cry1a protein [Danio rerio]
gi|190337408|gb|AAI63354.1| Cryptochrome 1a [Danio rerio]
Length = 619
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 72/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L +E N +L +E
Sbjct: 41 FAGSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK E + V +SHTL+D + +I+ NG PLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLIS 158
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 8/77 (10%)
Query: 116 HTVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLK 167
H+V C+ G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L
Sbjct: 29 HSVRCVYILDPWFAGSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLF 88
Query: 168 RELNFTKLCFEQDCEAY 184
+E N +L +E D E +
Sbjct: 89 KEWNINRLSYEYDSEPF 105
>gi|109106624|ref|XP_001113162.1| PREDICTED: cryptochrome-2-like [Macaca mulatta]
gi|402893708|ref|XP_003910033.1| PREDICTED: cryptochrome-2 [Papio anubis]
gi|355566579|gb|EHH22958.1| Cryptochrome-2 [Macaca mulatta]
gi|355752191|gb|EHH56311.1| Cryptochrome-2 [Macaca fascicularis]
Length = 593
Score = 99.4 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 48/118 (40%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D E +I+ NG PPLTYK + +S
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLERIIELNGQKPPLTYKRFQAIIS 177
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 66 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 124
>gi|115528160|gb|AAI24763.1| Cryptochrome 1a [Danio rerio]
Length = 619
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 72/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L +E N +L +E
Sbjct: 41 FAGSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK E + V +SHTL+D + +I+ NG PLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLIS 158
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 8/77 (10%)
Query: 116 HTVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLK 167
H+V C+ G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L
Sbjct: 29 HSVRCVYILDPWFAGSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLF 88
Query: 168 RELNFTKLCFEQDCEAY 184
+E N +L +E D E +
Sbjct: 89 KEWNINRLSYEYDSEPF 105
>gi|18858471|ref|NP_571862.1| cryptochrome 4 [Danio rerio]
gi|8698594|dbj|BAA96851.1| cryptochrome 4 [Danio rerio]
Length = 558
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 76/119 (63%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G MH+G R+RFLL+ L DLD +L++ G +LF++ GS +I ++L + T++ ++ +
Sbjct: 44 GAMHMGALRWRFLLQSLEDLDTRLQAIGSRLFVLCGSTANILRELVAQWGITQISYDTEV 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E + + DK ++ EN + VSHTL+D + +++ NG PPLTYK +LH +S +G
Sbjct: 104 EPYYTRMDKDIQTVAQENGLQTYTCVSHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLG 162
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 111 YKMY-LHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE 169
Y +Y L V G MH+G R+RFLL+ L DLD +L++ G +LF++ GS +I ++L +
Sbjct: 32 YPVYVLDRVFLQGAMHMGALRWRFLLQSLEDLDTRLQAIGSRLFVLCGSTANILRELVAQ 91
Query: 170 LNFTKLCFEQDCEAY 184
T++ ++ + E Y
Sbjct: 92 WGITQISYDTEVEPY 106
>gi|345483304|ref|XP_001606405.2| PREDICTED: cryptochrome-1 [Nasonia vitripennis]
Length = 627
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 70/118 (59%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++ N++RFLL+CL DLDR L +LF+++G P KL RE T L FE+
Sbjct: 101 FAGSANVSINKWRFLLQCLEDLDRSLHQLNSRLFVIRGQPADALPKLFREWGTTSLTFEE 160
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E RD+ + C E ITV + VSHTL+ + +I+ NG PPLTY + + ++
Sbjct: 161 DPEPYGRVRDENITTLCKELGITVVQRVSHTLYKLDEIIEKNGGKPPLTYHQFQNVIA 218
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++ N++RFLL+CL DLDR L +LF+++G P KL RE T L FE+D
Sbjct: 103 GSANVSINKWRFLLQCLEDLDRSLHQLNSRLFVIRGQPADALPKLFREWGTTSLTFEEDP 162
Query: 182 EAY 184
E Y
Sbjct: 163 EPY 165
>gi|8698584|dbj|BAA96846.1| cryptochrome 1a [Danio rerio]
Length = 556
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 72/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L +E N +L +E
Sbjct: 41 FAGSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK E + V +SHTL+D + +I+ NG PLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLIS 158
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 8/77 (10%)
Query: 116 HTVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLK 167
H+V C+ G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L
Sbjct: 29 HSVRCVYILDPWFAGSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLF 88
Query: 168 RELNFTKLCFEQDCEAY 184
+E N +L +E D E +
Sbjct: 89 KEWNINRLSYEYDSEPF 105
>gi|197246983|gb|AAI64413.1| Cry4 protein [Danio rerio]
Length = 558
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 76/119 (63%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G MH+G R+RFLL+ L DLD +L++ G +LF++ GS +I ++L + T++ ++ +
Sbjct: 44 GAMHMGALRWRFLLQSLEDLDTRLRAIGSRLFVLCGSTANILRELVAQWGITQISYDTEV 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E + + DK ++ EN + +SHTL+D + +++ NG PPLTYK +LH +S +G
Sbjct: 104 EPYYTRMDKDIQTVAQENGLQTYTCISHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLG 162
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 111 YKMY-LHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE 169
Y +Y L V G MH+G R+RFLL+ L DLD +L++ G +LF++ GS +I ++L +
Sbjct: 32 YPVYVLDRVFLQGAMHMGALRWRFLLQSLEDLDTRLRAIGSRLFVLCGSTANILRELVAQ 91
Query: 170 LNFTKLCFEQDCEAY 184
T++ ++ + E Y
Sbjct: 92 WGITQISYDTEVEPY 106
>gi|405952216|gb|EKC20054.1| Cleavage stimulation factor 77 kDa subunit [Crassostrea gigas]
Length = 1237
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ +G N++RFLL+CL DLD L+ +LF+++G P +F K+ +E N T L FE+
Sbjct: 736 FAGSSQVGINKWRFLLQCLEDLDTSLRKLNSRLFVLRGQPTDLFPKIFKEWNITTLSFEE 795
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
D E +RD ++ E + V SHTL+D + +I NG PPLTYK +
Sbjct: 796 DPEPFGKERDGAIQMLAKEAGVEVIVKTSHTLYDLQKIIAMNGGSPPLTYKRF 848
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ +G N++RFLL+CL DLD L+ +LF+++G P +F K+ +E N T L FE+D
Sbjct: 738 GSSQVGINKWRFLLQCLEDLDTSLRKLNSRLFVLRGQPTDLFPKIFKEWNITTLSFEEDP 797
Query: 182 EAY 184
E +
Sbjct: 798 EPF 800
>gi|27882257|gb|AAH44385.1| Cry4 protein [Danio rerio]
Length = 579
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 76/119 (63%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G MH+G R+RFLL+ L DLD +L++ G +LF++ GS +I ++L + T++ ++ +
Sbjct: 65 GAMHMGALRWRFLLQSLEDLDTRLRAIGSRLFVLCGSTANILRELVAQWGITQISYDTEV 124
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E + + DK ++ EN + +SHTL+D + +++ NG PPLTYK +LH +S +G
Sbjct: 125 EPYYTRMDKDIQTVAQENGLQTYTCISHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLG 183
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 111 YKMY-LHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE 169
Y +Y L V G MH+G R+RFLL+ L DLD +L++ G +LF++ GS +I ++L +
Sbjct: 53 YPVYVLDRVFLQGAMHMGALRWRFLLQSLEDLDTRLRAIGSRLFVLCGSTANILRELVAQ 112
Query: 170 LNFTKLCFEQDCEAY 184
T++ ++ + E Y
Sbjct: 113 WGITQISYDTEVEPY 127
>gi|390339199|ref|XP_788938.2| PREDICTED: cryptochrome-2-like [Strongylocentrotus purpuratus]
Length = 524
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 76/119 (63%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G NR+RFLLE L DLD ++ G +LF+V+G+P ++F ++ ++ N T+L FE D E
Sbjct: 48 VGINRWRFLLETLQDLDYSFRALGTRLFVVRGNPTTVFPEIFKKWNVTRLTFEVDTEPYA 107
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHI 126
+RD++V + +N++ V VSHTL+D E I+ N PP+TY+ + +S IG I
Sbjct: 108 RRRDQEVIELAKKNDVEVITKVSHTLYDTERTIKANKYKPPMTYQRMVGLLSEIGAPAI 166
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 121 IGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
I + +G NR+RFLLE L DLD ++ G +LF+V+G+P ++F ++ ++ N T+L FE D
Sbjct: 43 IESEKVGINRWRFLLETLQDLDYSFRALGTRLFVVRGNPTTVFPEIFKKWNVTRLTFEVD 102
Query: 181 CEAY 184
E Y
Sbjct: 103 TEPY 106
>gi|429544803|gb|AGA01579.1| cryptochrome 2 [Rhyparobia maderae]
Length = 586
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 71/121 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+
Sbjct: 46 FAGSSNVGINKWRFLLQCLEDLDRSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEE 105
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD+ + C E I+V VSHTL+ E +I+ NG PLTY + ++ +
Sbjct: 106 DPEPFGRVRDQNIMAMCKELGISVITRVSHTLYRLENIIENNGGKAPLTYHQFQTVIASM 165
Query: 122 G 122
G
Sbjct: 166 G 166
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+D
Sbjct: 48 GSSNVGINKWRFLLQCLEDLDRSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDP 107
Query: 182 EAY 184
E +
Sbjct: 108 EPF 110
>gi|242020203|ref|XP_002430545.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
corporis]
gi|212515709|gb|EEB17807.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
corporis]
Length = 506
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 70/121 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+
Sbjct: 49 FAGSSNVGINKWRFLLQCLEDLDRSLRKLNSRLFVIRGQPADTLPKLFKEWGTTNLTFEE 108
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + C E I+V SHTL+ E +I+ NG PPLTY + ++ I
Sbjct: 109 DPEPFGRVRDLNIMAMCKELGISVVSKSSHTLYKLEHIIEKNGGNPPLTYHQFQTIIANI 168
Query: 122 G 122
G
Sbjct: 169 G 169
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+D
Sbjct: 51 GSSNVGINKWRFLLQCLEDLDRSLRKLNSRLFVIRGQPADTLPKLFKEWGTTNLTFEEDP 110
Query: 182 EAY 184
E +
Sbjct: 111 EPF 113
>gi|405975335|gb|EKC39908.1| Cryptochrome-1 [Crassostrea gigas]
Length = 510
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 72/122 (59%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F ++G NR+RFLL+ L +LD LK +L+I++G P +F KL + + L FE+
Sbjct: 41 FANNANVGVNRWRFLLQTLQNLDENLKKINSRLYIIKGKPADVFPKLFKNWGVSHLTFEE 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD ++KK E+N+ V VSHTL+DP+ +I NG PLTY+ +S +
Sbjct: 101 DIEPYALTRDSEIKKLADEHNVKVTSCVSHTLFDPQRIISKNGGKAPLTYQRLQTVLSSL 160
Query: 122 GT 123
G+
Sbjct: 161 GS 162
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 125 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
++G NR+RFLL+ L +LD LK +L+I++G P +F KL + + L FE+D E Y
Sbjct: 46 NVGVNRWRFLLQTLQNLDENLKKINSRLYIIKGKPADVFPKLFKNWGVSHLTFEEDIEPY 105
>gi|432943720|ref|XP_004083252.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 624
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 71/118 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+ L DLD L+ +LF+++G P +F +L +E +L +E
Sbjct: 41 FAGSSNVGINRWRFLLQSLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKIARLSYEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK +E + V VSHTL+D + +I+ NG PLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVTVRVSHTLYDLDQIIELNGGQSPLTYKRFQTLIS 158
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+ L DLD L+ +LF+++G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSSNVGINRWRFLLQSLEDLDASLRKLNSRLFVIRGQPTDVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E +L +E D E +
Sbjct: 90 EWKIARLSYEYDSEPF 105
>gi|301773864|ref|XP_002922356.1| PREDICTED: cryptochrome-2-like, partial [Ailuropoda melanoleuca]
Length = 581
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 48 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEY 107
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 108 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIIS 165
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 54 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPF 112
>gi|281348773|gb|EFB24357.1| hypothetical protein PANDA_011308 [Ailuropoda melanoleuca]
Length = 580
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 48 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEY 107
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 108 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIIS 165
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 54 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPF 112
>gi|327259731|ref|XP_003214689.1| PREDICTED: cryptochrome-2-like [Anolis carolinensis]
Length = 586
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 70/118 (59%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ G +LF+V+G P +F +L +E T+L FE
Sbjct: 48 FAASSSVGINRWRFLLQSLEDLDNSLRKLGSRLFVVRGQPTDVFPRLFKEWRVTRLTFEY 107
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG+ PPLTYK + +S
Sbjct: 108 DSEPFGKERDAAIVKLAKEAGVEVITENSHTLYDLDRIIELNGHKPPLTYKRFQTIIS 165
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ +G NR+RFLL+ L DLD L+ G +LF+V+G P +F +L +E T+L FE D
Sbjct: 50 ASSSVGINRWRFLLQSLEDLDNSLRKLGSRLFVVRGQPTDVFPRLFKEWRVTRLTFEYDS 109
Query: 182 EAY 184
E +
Sbjct: 110 EPF 112
>gi|297688842|ref|XP_002821877.1| PREDICTED: cryptochrome-2 [Pongo abelii]
Length = 614
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 81 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 140
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 141 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 198
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 87 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 145
>gi|426368087|ref|XP_004051044.1| PREDICTED: cryptochrome-2 isoform 1 [Gorilla gorilla gorilla]
Length = 614
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 81 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 140
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 141 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 198
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 87 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 145
>gi|351696947|gb|EHA99865.1| Cryptochrome-2 [Heterocephalus glaber]
Length = 593
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 177
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 66 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 124
>gi|332836250|ref|XP_001160595.2| PREDICTED: cryptochrome-2 isoform 1 [Pan troglodytes]
gi|397473567|ref|XP_003808279.1| PREDICTED: cryptochrome-2 isoform 1 [Pan paniscus]
Length = 614
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 81 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 140
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 141 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 198
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 87 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 145
>gi|188536100|ref|NP_066940.2| cryptochrome-2 isoform 1 [Homo sapiens]
gi|194380960|dbj|BAG64048.1| unnamed protein product [Homo sapiens]
Length = 614
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 81 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 140
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 141 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 198
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 87 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 145
>gi|431915736|gb|ELK16069.1| Cryptochrome-2 [Pteropus alecto]
Length = 593
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEY 119
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 177
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 66 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPF 124
>gi|395815587|ref|XP_003781307.1| PREDICTED: cryptochrome-2 [Otolemur garnettii]
Length = 612
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 79 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 138
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 139 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 196
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 85 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 143
>gi|73983386|ref|XP_540761.2| PREDICTED: cryptochrome-2 [Canis lupus familiaris]
Length = 593
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIIS 177
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 66 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 124
>gi|348558770|ref|XP_003465189.1| PREDICTED: cryptochrome-2 [Cavia porcellus]
Length = 593
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 177
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 66 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 124
>gi|344247813|gb|EGW03917.1| Cryptochrome-2 [Cricetulus griseus]
Length = 577
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 44 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 103
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 104 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 161
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 50 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 108
>gi|50510573|dbj|BAD32272.1| mKIAA0658 protein [Mus musculus]
Length = 584
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 51 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 110
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 111 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALIS 168
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 57 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 115
>gi|403254649|ref|XP_003920073.1| PREDICTED: cryptochrome-2 [Saimiri boliviensis boliviensis]
Length = 593
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 177
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 66 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 124
>gi|149635020|ref|XP_001507425.1| PREDICTED: cryptochrome-2 [Ornithorhynchus anatinus]
Length = 582
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 47 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEY 106
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 107 DSEPFGKERDAAIVKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 164
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 53 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPF 111
>gi|344280774|ref|XP_003412157.1| PREDICTED: cryptochrome-2 [Loxodonta africana]
Length = 593
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 177
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 66 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 124
>gi|27312016|ref|NP_034093.1| cryptochrome-2 [Mus musculus]
gi|164519087|ref|NP_001106804.1| cryptochrome-2 [Mus musculus]
gi|81882058|sp|Q9R194.1|CRY2_MOUSE RecName: Full=Cryptochrome-2
gi|5670009|gb|AAD46561.1|AF156987_1 cryptochrome 2 [Mus musculus]
gi|26334673|dbj|BAC31037.1| unnamed protein product [Mus musculus]
gi|45219826|gb|AAH66799.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
gi|56078856|gb|AAH54794.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
gi|74227568|dbj|BAE21836.1| unnamed protein product [Mus musculus]
gi|148695658|gb|EDL27605.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
gi|148695659|gb|EDL27606.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
Length = 592
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 59 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 118
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 119 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALIS 176
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 65 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 123
>gi|149022681|gb|EDL79575.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
gi|149022682|gb|EDL79576.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
gi|183985822|gb|AAI66416.1| Cryptochrome 2 (photolyase-like) [Rattus norvegicus]
Length = 594
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 59 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 118
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 119 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALIS 176
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 65 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 123
>gi|19173768|ref|NP_596896.1| cryptochrome-2 [Rattus norvegicus]
gi|81867613|sp|Q923I8.1|CRY2_RAT RecName: Full=Cryptochrome-2
gi|15072464|gb|AAK61419.1| cryptochrome 2 [Rattus norvegicus]
Length = 594
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 59 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 118
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 119 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALIS 176
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 65 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 123
>gi|118572252|sp|Q49AN0.2|CRY2_HUMAN RecName: Full=Cryptochrome-2
gi|27469701|gb|AAH41814.1| Cryptochrome 2 (photolyase-like) [Homo sapiens]
gi|119588435|gb|EAW68029.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|119588436|gb|EAW68030.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|121647012|gb|ABM64210.1| photolyase-like cryptochrome 2 [Homo sapiens]
gi|167996599|gb|ACA14134.1| growth-inhibiting protein 37 [Homo sapiens]
gi|168267486|dbj|BAG09799.1| cryptochrome-2 [synthetic construct]
gi|325463641|gb|ADZ15591.1| cryptochrome 2 (photolyase-like) [synthetic construct]
Length = 593
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 177
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 66 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 124
>gi|3327130|dbj|BAA31633.1| KIAA0658 protein [Homo sapiens]
Length = 589
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 56 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 115
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 116 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 173
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 62 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 120
>gi|296217987|ref|XP_002755255.1| PREDICTED: cryptochrome-2 isoform 1 [Callithrix jacchus]
Length = 593
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 177
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 66 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 124
>gi|158255956|dbj|BAF83949.1| unnamed protein product [Homo sapiens]
Length = 593
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 177
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 66 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 124
>gi|2073148|dbj|BAA19864.1| photolyase/blue-light receptor homolog2 [Mus musculus]
Length = 569
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 36 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 95
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 96 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALIS 153
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 42 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 100
>gi|224073768|ref|XP_002304163.1| predicted protein [Populus trichocarpa]
gi|222841595|gb|EEE79142.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 67/113 (59%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD LK G +L I++G P + + +E KLCFE D
Sbjct: 54 PGSRLAGLNRIRFLLESLVDLDTSLKKLGSRLLILRGEPGQVLTRCLKEWGVKKLCFEYD 113
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
+ + D +VK++ + I V VSHTL++P +IQ NG PPLTY+ +L
Sbjct: 114 TDPHYQALDIRVKEYASAAGIEVFSPVSHTLFNPADIIQRNGGKPPLTYQSFL 166
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ G NR RFLLE L DLD LK G +L I++G P + + +E KLCFE D
Sbjct: 55 GSRLAGLNRIRFLLESLVDLDTSLKKLGSRLLILRGEPGQVLTRCLKEWGVKKLCFEYDT 114
Query: 182 EAY 184
+ +
Sbjct: 115 DPH 117
>gi|45383642|ref|NP_989575.1| cryptochrome-2 [Gallus gallus]
gi|19550965|gb|AAK61386.1| cryptochrome 2 [Gallus gallus]
Length = 582
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 69/118 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 50 FAASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEY 109
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NGN PPLTYK + +S
Sbjct: 110 DSEPFGKERDAAIIKLAKEAGVEVVIENSHTLYDLDRIIELNGNKPPLTYKRFQAIIS 167
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D
Sbjct: 52 ASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDS 111
Query: 182 EAY 184
E +
Sbjct: 112 EPF 114
>gi|348529122|ref|XP_003452063.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 630
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 74/125 (59%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+ L DLD L+ +LF+++G P +F +L +E T+L +E
Sbjct: 41 FAGSSNVGINRWRFLLQSLEDLDSSLRKLNSRLFVIRGQPTDVFPRLFKEWKITRLSYEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK +E + V SHTL++ + +I+ NG PLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVTVRTSHTLYELDKIIELNGGQSPLTYKRFQTLISRM 160
Query: 122 GTMHI 126
+ +
Sbjct: 161 DPVEV 165
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+ L DLD L+ +LF+++G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSSNVGINRWRFLLQSLEDLDSSLRKLNSRLFVIRGQPTDVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E T+L +E D E +
Sbjct: 90 EWKITRLSYEYDSEPF 105
>gi|302745154|gb|ADL62680.1| criptochrome 1b, partial [Phreatichthys andruzzii]
Length = 564
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 72/122 (59%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E T+L +E D E
Sbjct: 1 SSNVGINRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKITRLSYEYDSE 60
Query: 65 ALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTM 124
RD +KK E + V +SHTL+D + +I+ NG PLTYK + +S + +
Sbjct: 61 PFGKDRDAAIKKLATEAGVEVFVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISKMDPV 120
Query: 125 HI 126
I
Sbjct: 121 EI 122
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 123 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E T+L +E D E
Sbjct: 1 SSNVGINRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKITRLSYEYDSE 60
Query: 183 AY 184
+
Sbjct: 61 PF 62
>gi|307207594|gb|EFN85258.1| Cryptochrome-1 [Harpegnathos saltator]
Length = 558
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 71/120 (59%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+
Sbjct: 92 FAGSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEE 151
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + C E I+V + VSHTL+ + +I+ NG PPLTY + + V+ +
Sbjct: 152 DPEPFGRVRDHNISALCKELGISVVQRVSHTLYKLDEIIEKNGGKPPLTYHQFQNVVASM 211
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+D
Sbjct: 94 GSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDP 153
Query: 182 EAY 184
E +
Sbjct: 154 EPF 156
>gi|283806650|ref|NP_001164572.1| chryptochrome 2-1 [Acyrthosiphon pisum]
gi|283476383|emb|CAY26039.1| chryptochrome 2-1 [Acyrthosiphon pisum]
Length = 512
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 70/120 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G ++G N++RFLL+CL+DLD LK +LF+++G P KL R+ T FE+
Sbjct: 42 FAGASNVGINKWRFLLQCLSDLDNSLKKLNSRLFVIKGQPAEALPKLFRQWGTTNFTFEE 101
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD+ +K C+E I+V SHTL+ + +I NG PLTY ++ + + CI
Sbjct: 102 DPEPFGRVRDQNIKVMCSELGISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQNILECI 161
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G ++G N++RFLL+CL+DLD LK +LF+++G P KL R+ T FE+D
Sbjct: 44 GASNVGINKWRFLLQCLSDLDNSLKKLNSRLFVIKGQPAEALPKLFRQWGTTNFTFEEDP 103
Query: 182 EAY 184
E +
Sbjct: 104 EPF 106
>gi|136255185|ref|NP_001077099.1| cryptochrome 2 [Apis mellifera]
gi|133754347|gb|ABO38437.1| cryptochrome 2 [Apis mellifera]
Length = 570
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 71/120 (59%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ +IG N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+
Sbjct: 59 FAGSTNIGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEE 118
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + C E I+V + VSHTL+ + +I+ NG+ PPLTY + V+ +
Sbjct: 119 DPEPFGRVRDHNISALCKELGISVVQKVSHTLYKLDEIIERNGDKPPLTYHQFQTVVASM 178
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ +IG N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+D
Sbjct: 61 GSTNIGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDP 120
Query: 182 EAY 184
E +
Sbjct: 121 EPF 123
>gi|44843616|emb|CAE54427.1| sCRY2L protein [Spalax judaei]
Length = 606
Score = 97.1 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 67/118 (56%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 73 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 132
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I NG PPLTYK + +S
Sbjct: 133 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIIS 190
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 79 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 137
>gi|410973791|ref|XP_003993331.1| PREDICTED: cryptochrome-2, partial [Felis catus]
Length = 582
Score = 97.1 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 67/118 (56%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 49 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 108
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I NG PPLTYK + +S
Sbjct: 109 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIIS 166
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 55 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 113
>gi|380254427|dbj|BAL72538.1| cryptochrome1 [Siganus guttatus]
Length = 581
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 69/118 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ +G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E T+L +E
Sbjct: 41 FAGSSSVGINRWRFLLDCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWQITRLSYEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD V K +E + V +SHTL+ +I+ N PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAVHKLASEAGVEVIVRISHTLYSLAKIIELNDGHPPLTYKRFQDIIS 158
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ +G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E T+L +E D
Sbjct: 43 GSSSVGINRWRFLLDCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWQITRLSYEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|40254688|ref|NP_571861.2| cryptochrome-2 [Danio rerio]
gi|28278010|gb|AAH46088.1| Cryptochrome 3 [Danio rerio]
Length = 598
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 71/118 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLLE L DLD L+ +LF+V+G P +F +L +E N T+L FE
Sbjct: 41 FAGSANVGVNRWRFLLESLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + +HTL++P+ +I+ N + PPLT+K + V+
Sbjct: 101 DSEPYGKERDAAIIKMAQEYGVETVVRNTHTLYNPDRIIEMNNHSPPLTFKRFQAIVN 158
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLLE L DLD L+ +LF+V+G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSANVGVNRWRFLLESLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E N T+L FE D E Y
Sbjct: 90 EWNVTRLTFEYDSEPY 105
>gi|44843614|emb|CAE54426.1| sCRY2S protein [Spalax judaei]
Length = 591
Score = 97.1 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 67/118 (56%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 58 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 117
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I NG PPLTYK + +S
Sbjct: 118 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIIS 175
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 64 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 122
>gi|340720203|ref|XP_003398531.1| PREDICTED: cryptochrome-1-like [Bombus terrestris]
Length = 574
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 71/120 (59%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+
Sbjct: 59 FAGSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEE 118
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + C E I+V + VSHTL+ + +I+ NG PPLTY + + V+ +
Sbjct: 119 DPEPFGRVRDHNISALCKELGISVVQKVSHTLYKLDEIIERNGGKPPLTYHQFQNVVASM 178
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+D
Sbjct: 61 GSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDP 120
Query: 182 EAY 184
E +
Sbjct: 121 EPF 123
>gi|283806654|ref|NP_001164573.1| chryptochrome 2-2 [Acyrthosiphon pisum]
gi|283476385|emb|CAY26040.1| chryptochrome 2-2 [Acyrthosiphon pisum]
Length = 512
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 69/120 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G ++G N++RFLL+CL+DLD LK +LF+++G P KL R+ T FE+
Sbjct: 42 FAGASNVGINKWRFLLQCLSDLDNSLKKLNSRLFVIKGQPAEALPKLFRQWGTTNFTFEE 101
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD+ +K C+E I+V SHTL+ + +I NG PLTY ++ + CI
Sbjct: 102 DPEPFGRVRDQNIKVMCSEMGISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQKLLECI 161
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G ++G N++RFLL+CL+DLD LK +LF+++G P KL R+ T FE+D
Sbjct: 44 GASNVGINKWRFLLQCLSDLDNSLKKLNSRLFVIKGQPAEALPKLFRQWGTTNFTFEEDP 103
Query: 182 EAY 184
E +
Sbjct: 104 EPF 106
>gi|350420124|ref|XP_003492407.1| PREDICTED: cryptochrome-1 [Bombus impatiens]
gi|129593762|gb|ABO31112.1| cryptochrome 2 protein [Bombus impatiens]
Length = 574
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 71/120 (59%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+
Sbjct: 59 FAGSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEE 118
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + C E I+V + VSHTL+ + +I+ NG PPLTY + + V+ +
Sbjct: 119 DPEPFGRVRDHNISALCKELGISVVQKVSHTLYKLDEIIERNGGKPPLTYHQFQNVVASM 178
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+D
Sbjct: 61 GSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDP 120
Query: 182 EAY 184
E +
Sbjct: 121 EPF 123
>gi|255553063|ref|XP_002517574.1| DNA photolyase, putative [Ricinus communis]
gi|223543206|gb|EEF44738.1| DNA photolyase, putative [Ricinus communis]
Length = 537
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 68/116 (58%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD LK G +L +++G P + + + + KLCFE D
Sbjct: 54 PGSSRAGINRIRFLLESLVDLDLSLKKLGSKLLVLRGEPSQVLIRCLKIWDVEKLCFEYD 113
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
++ + D KVK++ + I V VSHTL++P +IQ NG PPL+Y+ +L
Sbjct: 114 TDSYYQALDAKVKEYASSARIEVFSPVSHTLFNPADIIQKNGGKPPLSYQSFLKVA 169
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ G NR RFLLE L DLD LK G +L +++G P + + + + KLCFE D
Sbjct: 55 GSSRAGINRIRFLLESLVDLDLSLKKLGSKLLVLRGEPSQVLIRCLKIWDVEKLCFEYDT 114
Query: 182 EAY 184
++Y
Sbjct: 115 DSY 117
>gi|18858467|ref|NP_571867.1| cryptochrome 2b [Danio rerio]
gi|8698590|dbj|BAA96849.1| cryptochrome 2b [Danio rerio]
Length = 638
Score = 97.1 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 70/120 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G ++G NR+RFLL+ L DLD L+ LF+++G P IF +L +E ++L FE
Sbjct: 41 FAGASNLGVNRWRFLLQSLEDLDASLRKLNSCLFVIRGQPADIFPRLFKEWKVSRLTFEF 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PLTYK + VS +
Sbjct: 101 DSEPFGKERDAAIKKLACEAGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLVSSM 160
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G ++G NR+RFLL+ L DLD L+ LF+++G P IF +L +E ++L FE D
Sbjct: 43 GASNLGVNRWRFLLQSLEDLDASLRKLNSCLFVIRGQPADIFPRLFKEWKVSRLTFEFDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|332211183|ref|XP_003254698.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-2 [Nomascus
leucogenys]
Length = 543
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 83 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 142
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 143 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 200
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D
Sbjct: 85 ASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDS 144
Query: 182 EAY 184
E +
Sbjct: 145 EPF 147
>gi|224051116|ref|XP_002198900.1| PREDICTED: cryptochrome-2, partial [Taeniopygia guttata]
Length = 540
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 69/118 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F T +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 8 FAATSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEY 67
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG+ PPLTYK + +S
Sbjct: 68 DSEPFGKERDAAIVKLAKEAGVEVVIENSHTLYDLDRIIELNGHKPPLTYKRFQAIIS 125
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
T +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D
Sbjct: 10 ATSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDS 69
Query: 182 EAY 184
E +
Sbjct: 70 EPF 72
>gi|449482006|ref|XP_002196554.2| PREDICTED: cryptochrome-1 [Taeniopygia guttata]
Length = 715
Score = 96.7 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/109 (41%), Positives = 65/109 (59%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
N RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E D E +R
Sbjct: 145 NSCRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKER 204
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 205 DAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 253
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
N RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E D E +
Sbjct: 145 NSCRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPF 200
>gi|432863953|ref|XP_004070204.1| PREDICTED: cryptochrome-2-like [Oryzias latipes]
Length = 667
Score = 96.3 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 49/118 (41%), Positives = 69/118 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G ++G NR+RFLLE L DLD LK +LF+V+G P +F +L +E N T+L FE
Sbjct: 41 FAGAANVGINRWRFLLEALEDLDCSLKKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + SHTL++ + +I+ N N PPLT+K + VS
Sbjct: 101 DPEPYGKERDGAIIKMAQEFGVETVVRNSHTLYNLDRIIELNNNSPPLTFKRFQTIVS 158
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G ++G NR+RFLLE L DLD LK +LF+V+G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGAANVGINRWRFLLEALEDLDCSLKKLNSRLFVVRGQPTDVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E N T+L FE D E Y
Sbjct: 90 EWNVTRLTFEYDPEPY 105
>gi|444245671|gb|AGD94517.1| cryptochrome, partial [Solenopsis invicta]
Length = 573
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 71/121 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+
Sbjct: 61 FAGSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEE 120
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + C E I+V + +SHTL+ + +I+ N PPLTY + + V+ +
Sbjct: 121 DPEPFGRVRDHNISALCEELGISVVQRISHTLYKLDEIIERNSGKPPLTYHQFQNVVAGM 180
Query: 122 G 122
G
Sbjct: 181 G 181
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+D
Sbjct: 63 GSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDP 122
Query: 182 EAY 184
E +
Sbjct: 123 EPF 125
>gi|317106754|dbj|BAJ53248.1| JHL25H03.11 [Jatropha curcas]
Length = 536
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 67/116 (57%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR +FLLE LADLD LK G +L +++G P + +E + ++CFE D
Sbjct: 53 PGSTRAGLNRIKFLLESLADLDLSLKKLGSKLLVLKGEPSQVLISCLKEWDVKRVCFEYD 112
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
+ + D KVK + + I V VSHTL++P +IQ NG PPLTY+ +L
Sbjct: 113 TDPYYQALDVKVKDFASSVGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKVA 168
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ G NR +FLLE LADLD LK G +L +++G P + +E + ++CFE D
Sbjct: 54 GSTRAGLNRIKFLLESLADLDLSLKKLGSKLLVLKGEPSQVLISCLKEWDVKRVCFEYDT 113
Query: 182 EAY 184
+ Y
Sbjct: 114 DPY 116
>gi|449276417|gb|EMC84949.1| Cryptochrome-1, partial [Columba livia]
Length = 570
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 65/106 (61%)
Query: 14 RFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKK 73
RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D E +RD
Sbjct: 3 RFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAA 62
Query: 74 VKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
+KK +E + V +SHTL+D + +I+ NG PPLTYK Y +S
Sbjct: 63 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRYQTLIS 108
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 132 RFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D E +
Sbjct: 3 RFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPF 55
>gi|311247933|ref|XP_003122883.1| PREDICTED: cryptochrome-2 isoform 1 [Sus scrofa]
Length = 594
Score = 96.3 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 67/118 (56%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F L +E T+L FE
Sbjct: 61 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPALFQEWGVTRLTFEY 120
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 121 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQALIS 178
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 116 HTVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLK 167
H V C+ + +G NR+RFLL+ L DLD L+ +LF+V+G P +F L
Sbjct: 49 HCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPALF 108
Query: 168 RELNFTKLCFEQDCEAY 184
+E T+L FE D E +
Sbjct: 109 QEWGVTRLTFEYDSEPF 125
>gi|94733627|emb|CAK05311.1| cryptochrome 1b [Danio rerio]
Length = 606
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 71/118 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L +E ++L +E
Sbjct: 41 FAGSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E RD ++K E + V +SHTL+D + +I+ NG PLTYK + +S
Sbjct: 101 DSEPFGKDRDAAIRKLATEAGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLIS 158
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L +E ++L +E D
Sbjct: 43 GSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|8698586|dbj|BAA96847.1| cryptochrome 1b [Danio rerio]
Length = 606
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 71/118 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L +E ++L +E
Sbjct: 41 FAGSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E RD ++K E + V +SHTL+D + +I+ NG PLTYK + +S
Sbjct: 101 DSEPFGKDRDAAIRKLATEAGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLIS 158
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L +E ++L +E D
Sbjct: 43 GSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|148540005|ref|NP_571865.4| cryptochrome 1b [Danio rerio]
gi|27882364|gb|AAH44558.1| Cry1b protein [Danio rerio]
Length = 606
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 71/118 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L +E ++L +E
Sbjct: 41 FAGSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E RD ++K E + V +SHTL+D + +I+ NG PLTYK + +S
Sbjct: 101 DSEPFGKDRDAAIRKLATEAGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLIS 158
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L +E ++L +E D
Sbjct: 43 GSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|118572251|sp|Q8QG60.2|CRY2_CHICK RecName: Full=Cryptochrome-2
Length = 582
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 69/118 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 50 FAASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEY 109
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL++ + +I+ NGN PPLTYK + +S
Sbjct: 110 DSEPFGKERDAAIIKLAKEAGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIIS 167
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D
Sbjct: 52 ASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEYDS 111
Query: 182 EAY 184
E +
Sbjct: 112 EPF 114
>gi|302745160|gb|ADL62683.1| cryptochrome 3, partial [Phreatichthys andruzzii]
Length = 475
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 71/118 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E N T+L FE
Sbjct: 19 FAGSANVGVNRWRFLLDSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEY 78
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + +HTL++P+ +I+ N + PPLT+K + V+
Sbjct: 79 DSEPYGKERDAAIIKMAQEYGVQTVVRNTHTLYNPDRIIEMNNHSPPLTFKRFQAIVN 136
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +
Sbjct: 8 TVRCVYILDPWFAGSANVGVNRWRFLLDSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFK 67
Query: 169 ELNFTKLCFEQDCEAY 184
E N T+L FE D E Y
Sbjct: 68 EWNVTRLTFEYDSEPY 83
>gi|147906624|ref|NP_001081421.1| 6-4 photolyase [Xenopus laevis]
gi|8809676|dbj|BAA97126.1| 6-4 photolyase [Xenopus laevis]
gi|213625040|gb|AAI69683.1| 6-4 photolyase [Xenopus laevis]
gi|213627768|gb|AAI69685.1| 6-4 photolyase [Xenopus laevis]
Length = 526
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 73/121 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP M + NR+RFL++ L DLD LK +LF+V+G P +F L ++ T+L FE
Sbjct: 41 FPKNMQVSVNRWRFLIDALKDLDENLKKINSRLFVVRGKPAEVFPLLFKKWKVTRLTFEV 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +V+K AE+++ V + VS+TL+D + +I N PPLTY + ++ +
Sbjct: 101 DIEPYSRQRDAEVEKLAAEHDVQVIQKVSNTLYDIDRIIAENNGKPPLTYVRFQTVLAPL 160
Query: 122 G 122
G
Sbjct: 161 G 161
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 123 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
M + NR+RFL++ L DLD LK +LF+V+G P +F L ++ T+L FE D E
Sbjct: 44 NMQVSVNRWRFLIDALKDLDENLKKINSRLFVVRGKPAEVFPLLFKKWKVTRLTFEVDIE 103
Query: 183 AY 184
Y
Sbjct: 104 PY 105
>gi|387015302|gb|AFJ49770.1| Cryptochrome-2-like [Crotalus adamanteus]
Length = 590
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T L FE
Sbjct: 55 FAASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTHLTFEY 114
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG+ PPLTYK + +S
Sbjct: 115 DSEPFGEERDAAIVKLAKEAGVKVTTENSHTLYDLDRIIELNGHKPPLTYKRFQAIIS 172
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T L FE D
Sbjct: 57 ASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTHLTFEYDS 116
Query: 182 EAY 184
E +
Sbjct: 117 EPF 119
>gi|187608706|ref|NP_001120012.1| uncharacterized protein LOC100144974 [Xenopus (Silurana)
tropicalis]
gi|165970470|gb|AAI58310.1| LOC100144974 protein [Xenopus (Silurana) tropicalis]
Length = 531
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 71/121 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP M + NR+RFL+E L DLD LK +LF+V+G P +F L ++ T+L FE
Sbjct: 41 FPRNMKVSVNRWRFLIEALKDLDENLKKINSRLFVVRGKPTEVFPLLFKKWKVTRLTFEV 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD V+K AE+N+ V + VS+TL+ + +I N PPLTY + ++ +
Sbjct: 101 DTEPYSRQRDADVEKLAAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLASL 160
Query: 122 G 122
G
Sbjct: 161 G 161
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 123 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
M + NR+RFL+E L DLD LK +LF+V+G P +F L ++ T+L FE D E
Sbjct: 44 NMKVSVNRWRFLIEALKDLDENLKKINSRLFVVRGKPTEVFPLLFKKWKVTRLTFEVDTE 103
Query: 183 AY 184
Y
Sbjct: 104 PY 105
>gi|348523572|ref|XP_003449297.1| PREDICTED: cryptochrome-2-like [Oreochromis niloticus]
Length = 672
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 69/118 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G ++G NR+RFLLE L DLD LK +LF+V+G P +F +L +E N T+L FE
Sbjct: 41 FAGAANVGINRWRFLLEALEDLDSSLKKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + SHTL++ + +I+ N N PPLT+K + VS
Sbjct: 101 DPEPYGKERDGAIIKMAQEFGVETIVRNSHTLYNLDRIIEMNNNSPPLTFKRFQTIVS 158
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G ++G NR+RFLLE L DLD LK +LF+V+G P +F +L +E N T+L FE D
Sbjct: 43 GAANVGINRWRFLLEALEDLDSSLKKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEYDP 102
Query: 182 EAY 184
E Y
Sbjct: 103 EPY 105
>gi|183986194|gb|AAI66277.1| LOC100144974 protein [Xenopus (Silurana) tropicalis]
Length = 531
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 71/121 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP M + NR+RFL+E L DLD LK +LF+V+G P +F L ++ T+L FE
Sbjct: 41 FPRNMKVSVNRWRFLIEALKDLDENLKKINSRLFVVRGKPTEVFPLLFKKWKVTRLTFEV 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD V+K AE+N+ V + VS+TL+ + +I N PPLTY + ++ +
Sbjct: 101 DTEPYSRQRDADVEKLAAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLASL 160
Query: 122 G 122
G
Sbjct: 161 G 161
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 123 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
M + NR+RFL+E L DLD LK +LF+V+G P +F L ++ T+L FE D E
Sbjct: 44 NMKVSVNRWRFLIEALKDLDENLKKINSRLFVVRGKPTEVFPLLFKKWKVTRLTFEVDTE 103
Query: 183 AY 184
Y
Sbjct: 104 PY 105
>gi|167736303|dbj|BAG07408.1| cryptochrome-m [Riptortus pedestris]
Length = 538
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 68/120 (56%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F ++G N++RFLL+CL DLDR L +LF+++G P I KL +E T L FE+
Sbjct: 42 FANASNVGINKWRFLLQCLEDLDRSLMKLNSRLFVIRGQPADILPKLLKEWGTTCLTFEE 101
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD+ + C NITV V+HTL+ E +I+ NG PLTY + V+ +
Sbjct: 102 DPEPFGRVRDQNIMAMCRGMNITVISLVAHTLYKLECIIERNGGRAPLTYHQFQSVVASM 161
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 125 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
++G N++RFLL+CL DLDR L +LF+++G P I KL +E T L FE+D E +
Sbjct: 47 NVGINKWRFLLQCLEDLDRSLMKLNSRLFVIRGQPADILPKLLKEWGTTCLTFEEDPEPF 106
>gi|45643657|gb|AAS72904.1| cryptochrome 2 variant 1, partial [Passer domesticus]
Length = 361
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 69/118 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 31 FAASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEY 90
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG+ PPLTYK + +S
Sbjct: 91 DSEPFGKERDAAIIKLAKEAGVEVVIENSHTLYDLDRIIELNGHKPPLTYKRFQAIIS 148
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D
Sbjct: 33 ASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDS 92
Query: 182 EAY 184
E +
Sbjct: 93 EPF 95
>gi|297834434|ref|XP_002885099.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
gi|297330939|gb|EFH61358.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 66/113 (58%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD LK G +L +++G P + + +E +LCFE D
Sbjct: 53 PGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVLKGEPGEVLFRCLQEWKVKRLCFEYD 112
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
+ + D KVK + + + V VSHTL++P VI+ NG PPL+Y+ +L
Sbjct: 113 TDPYYKALDVKVKDYASSTGVEVFSPVSHTLFNPADVIEKNGGKPPLSYQSFL 165
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ G NR RFLLE L DLD LK G +L +++G P + + +E +LCFE D
Sbjct: 54 GSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVLKGEPGEVLFRCLQEWKVKRLCFEYDT 113
Query: 182 EAY 184
+ Y
Sbjct: 114 DPY 116
>gi|312372433|gb|EFR20390.1| hypothetical protein AND_20159 [Anopheles darlingi]
Length = 1043
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 70/120 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E + T L FE+
Sbjct: 144 FAGSSNVGINKWRFLLQCLDDLDRNLRKLNSRLFVIRGQPADALPKLFKEWSTTCLTFEE 203
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + + C E I V SHTL++ E +I+ NG PLTY + ++ +
Sbjct: 204 DPEPFGRVRDHNISEMCKELGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASM 263
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E + T L FE+D
Sbjct: 146 GSSNVGINKWRFLLQCLDDLDRNLRKLNSRLFVIRGQPADALPKLFKEWSTTCLTFEEDP 205
Query: 182 EAY 184
E +
Sbjct: 206 EPF 208
>gi|170070074|ref|XP_001869456.1| cryptochrome 2 [Culex quinquefasciatus]
gi|167866000|gb|EDS29383.1| cryptochrome 2 [Culex quinquefasciatus]
Length = 828
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 69/120 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+
Sbjct: 86 FAGSSNVGINKWRFLLQCLEDLDRNLRQLNSRLFVIRGQPADALPKLFKEWGTTCLTFEE 145
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + + C E NI V VSHTL+ E +I+ N PLTY + ++ +
Sbjct: 146 DPEPFGKVRDHNISEMCKELNIDVISAVSHTLYKLERIIEKNNGRAPLTYNQFQAIIASM 205
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+D
Sbjct: 88 GSSNVGINKWRFLLQCLEDLDRNLRQLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDP 147
Query: 182 EAY 184
E +
Sbjct: 148 EPF 150
>gi|312378885|gb|EFR25332.1| hypothetical protein AND_09443 [Anopheles darlingi]
Length = 558
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 71/115 (61%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+ +G NR+RFL + L +LD L++ +L++V+G+P+ IF +L N + L +E D E
Sbjct: 53 LRVGPNRWRFLQQTLVNLDENLRTINSRLYVVRGNPVQIFPELFDRWNVSLLTYEHDIEP 112
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
+RDK V+ E+N+T VSHT++ PE +++ NG PPLTY+ Y+ S
Sbjct: 113 YAVQRDKTVEGHAREHNVTTHVEVSHTIFHPETIVKRNGGKPPLTYQKYVSLASA 167
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
+ +G NR+RFL + L +LD L++ +L++V+G+P+ IF +L N + L +E D E
Sbjct: 53 LRVGPNRWRFLQQTLVNLDENLRTINSRLYVVRGNPVQIFPELFDRWNVSLLTYEHDIEP 112
Query: 184 Y 184
Y
Sbjct: 113 Y 113
>gi|147901075|ref|NP_001083936.1| cryptochrome 2 (photolyase-like) [Xenopus laevis]
gi|50415857|gb|AAH77381.1| Cry2 protein [Xenopus laevis]
Length = 570
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/118 (40%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + G NR+RFLL+ L DLD L+ +LF+V+G P +F KL +E ++L FE
Sbjct: 45 FAASSSGGVNRWRFLLQSLEDLDSSLRKLNSRLFVVRGQPADVFPKLFKEWGVSRLTFEY 104
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + VI+ NG+ PPLTYK + +S
Sbjct: 105 DSEPFGKERDAVIMKLAKEAGVEVIVENSHTLYDSDRVIELNGHSPPLTYKRFQAIIS 162
Score = 58.9 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
G NR+RFLL+ L DLD L+ +LF+V+G P +F KL +E ++L FE D E +
Sbjct: 52 GVNRWRFLLQSLEDLDSSLRKLNSRLFVVRGQPADVFPKLFKEWGVSRLTFEYDSEPF 109
>gi|45643659|gb|AAS72905.1| cryptochrome 2 variant 2 [Passer domesticus]
Length = 361
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 69/118 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 31 FAASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEY 90
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG+ PPLTYK + +S
Sbjct: 91 DSEPFGKERDAAIIKLAKEAGVEVVIENSHTLYDLDRIIELNGHKPPLTYKRFQAIIS 148
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +
Sbjct: 20 TVRCVYILDPWFAASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFK 79
Query: 169 ELNFTKLCFEQDCEAY 184
E T+L FE D E +
Sbjct: 80 EWGVTRLTFEYDSEPF 95
>gi|301622212|ref|XP_002940429.1| PREDICTED: cryptochrome-1-like [Xenopus (Silurana) tropicalis]
Length = 531
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 71/121 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP M + NR+RFL+E L DLD LK +LF+V+G P +F L ++ T+L FE
Sbjct: 41 FPRNMKVSVNRWRFLIEALKDLDENLKKINSRLFVVRGKPTEVFPLLFKKWKVTRLTFEV 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD V+K AE+N+ V + VS+TL+ + +I N PPLTY + ++ +
Sbjct: 101 DTEPYSRQRDADVEKLAAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLALL 160
Query: 122 G 122
G
Sbjct: 161 G 161
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 123 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
M + NR+RFL+E L DLD LK +LF+V+G P +F L ++ T+L FE D E
Sbjct: 44 NMKVSVNRWRFLIEALKDLDENLKKINSRLFVVRGKPTEVFPLLFKKWKVTRLTFEVDTE 103
Query: 183 AY 184
Y
Sbjct: 104 PY 105
>gi|8698592|dbj|BAA96850.1| cryptochrome3 [Danio rerio]
Length = 598
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 70/118 (59%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLLE L DLD L+ +L +V+G P +F +L +E N T+L FE
Sbjct: 41 FAGSANVGVNRWRFLLESLEDLDTSLRKLNSRLSVVRGQPTDVFPRLFKEWNVTRLTFEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + SHTL++P+ +I+ N + PPLT+K + V+
Sbjct: 101 DSEPYGKERDAAIIKMAQEYGVETVVRNSHTLYNPDRIIEMNNHSPPLTFKRFQAIVN 158
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLLE L DLD L+ +L +V+G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSANVGVNRWRFLLESLEDLDTSLRKLNSRLSVVRGQPTDVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E N T+L FE D E Y
Sbjct: 90 EWNVTRLTFEYDSEPY 105
>gi|170059953|ref|XP_001865587.1| cryptochrome-1 [Culex quinquefasciatus]
gi|167878532|gb|EDS41915.1| cryptochrome-1 [Culex quinquefasciatus]
Length = 789
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 69/120 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+
Sbjct: 88 FAGSSNVGINKWRFLLQCLEDLDRNLRQLNSRLFVIRGQPADALPKLFKEWGTTCLTFEE 147
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + + C E NI V VSHTL+ E +I+ N PLTY + ++ +
Sbjct: 148 DPEPFGKVRDHNISEMCKELNIDVISAVSHTLYKLERIIEKNNGRAPLTYNQFQAIIASM 207
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+D
Sbjct: 90 GSSNVGINKWRFLLQCLEDLDRNLRQLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDP 149
Query: 182 EAY 184
E +
Sbjct: 150 EPF 152
>gi|157131015|ref|XP_001655778.1| DNA photolyase [Aedes aegypti]
gi|108871687|gb|EAT35912.1| AAEL011967-PA [Aedes aegypti]
Length = 820
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 69/120 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+
Sbjct: 82 FAGSSNVGINKWRFLLQCLEDLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEE 141
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + + C E I V VSHTL+ E +I+ NG PLTY + ++ +
Sbjct: 142 DPEPFGKVRDHNISEMCKELGIEVISAVSHTLYKLERIIEKNGGRAPLTYHQFQAIIASM 201
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+D
Sbjct: 84 GSSNVGINKWRFLLQCLEDLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDP 143
Query: 182 EAY 184
E +
Sbjct: 144 EPF 146
>gi|347971574|ref|XP_313179.4| AGAP004261-PA [Anopheles gambiae str. PEST]
gi|347971576|ref|XP_003436763.1| AGAP004261-PB [Anopheles gambiae str. PEST]
gi|347971578|ref|XP_003436764.1| AGAP004261-PC [Anopheles gambiae str. PEST]
gi|333468729|gb|EAA44753.4| AGAP004261-PA [Anopheles gambiae str. PEST]
gi|333468730|gb|EGK97037.1| AGAP004261-PB [Anopheles gambiae str. PEST]
gi|333468731|gb|EGK97038.1| AGAP004261-PC [Anopheles gambiae str. PEST]
Length = 1056
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 69/120 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+
Sbjct: 137 FAGSSNVGINKWRFLLQCLDDLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEE 196
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + + C E I V SHTL++ E +I+ NG PLTY + ++ +
Sbjct: 197 DPEPFGRVRDHNISEMCKELGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASM 256
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+D
Sbjct: 139 GSSNVGINKWRFLLQCLDDLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDP 198
Query: 182 EAY 184
E +
Sbjct: 199 EPF 201
>gi|78191297|gb|ABB29887.1| cryptochrome 2 [Anopheles gambiae]
Length = 961
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 69/120 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+
Sbjct: 42 FAGSSNVGINKWRFLLQCLDDLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEE 101
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + + C E I V SHTL++ E +I+ NG PLTY + ++ +
Sbjct: 102 DPEPFGRVRDHNISEMCKELGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASM 161
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+D
Sbjct: 44 GSSNVGINKWRFLLQCLDDLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDP 103
Query: 182 EAY 184
E +
Sbjct: 104 EPF 106
>gi|260829102|ref|XP_002609501.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
gi|229294858|gb|EEN65511.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
Length = 514
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 69/118 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +L++++G P +F +L +E + L FE+
Sbjct: 43 FAGSSNVGVNRWRFLLQCLEDLDASLRKLNSRLYVIRGQPTDVFPRLFKEWKVSCLSFEE 102
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD V K E + V SHTL+ + +I NG PPLTYK + +S
Sbjct: 103 DSEPFGRERDMAVMKLAKEAGVKVILRTSHTLYKLQDIIDVNGGQPPLTYKRFQAILS 160
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +L++++G P +F +L +E + L FE+D
Sbjct: 45 GSSNVGVNRWRFLLQCLEDLDASLRKLNSRLYVIRGQPTDVFPRLFKEWKVSCLSFEEDS 104
Query: 182 EAY 184
E +
Sbjct: 105 EPF 107
>gi|79313247|ref|NP_001030703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
gi|332642183|gb|AEE75704.1| (6-4)DNA photolyase [Arabidopsis thaliana]
Length = 445
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD LK G +L + +G P + + +E +LCFE D
Sbjct: 72 PGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYD 131
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
+ + D KVK + + + V VSHTL++P +I+ NG PPL+Y+ +L
Sbjct: 132 TDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVA 187
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ G NR RFLLE L DLD LK G +L + +G P + + +E +LCFE D
Sbjct: 73 GSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDT 132
Query: 182 EAY 184
+ Y
Sbjct: 133 DPY 135
>gi|302795740|ref|XP_002979633.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
gi|300152881|gb|EFJ19522.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
Length = 527
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 68/112 (60%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ +G NR +FLLE L DLDR L S G +L +V G+PI + +L + KLCFE D
Sbjct: 48 PGSARVGINRIQFLLESLQDLDRNLSSRGSKLLLVHGNPIQVIPELLDKWRIRKLCFEFD 107
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
E RD K+K+ + I + VSHT+++P+++I NG PLT++ +
Sbjct: 108 TEPYALDRDAKIKEHAKDKGIELHCPVSHTIFNPDLLIAKNGGKAPLTFQSF 159
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%)
Query: 118 VSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177
S G+ +G NR +FLLE L DLDR L S G +L +V G+PI + +L + KLCF
Sbjct: 45 ASSPGSARVGINRIQFLLESLQDLDRNLSSRGSKLLLVHGNPIQVIPELLDKWRIRKLCF 104
Query: 178 EQDCEAY 184
E D E Y
Sbjct: 105 EFDTEPY 111
>gi|18400841|ref|NP_566520.1| (6-4)DNA photolyase [Arabidopsis thaliana]
gi|306756349|sp|O48652.2|UVR3_ARATH RecName: Full=(6-4)DNA photolyase; AltName: Full=Protein UV repair
defective 3
gi|332642182|gb|AEE75703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
Length = 556
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD LK G +L + +G P + + +E +LCFE D
Sbjct: 72 PGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYD 131
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
+ + D KVK + + + V VSHTL++P +I+ NG PPL+Y+ +L
Sbjct: 132 TDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVA 187
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ G NR RFLLE L DLD LK G +L + +G P + + +E +LCFE D
Sbjct: 73 GSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDT 132
Query: 182 EAY 184
+ Y
Sbjct: 133 DPY 135
>gi|228312124|pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure
gi|228312125|pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure
gi|228312126|pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure
gi|2804280|dbj|BAA24449.1| 6-4 photolyase [Arabidopsis thaliana]
gi|3929918|dbj|BAA34711.1| 6-4 photolyase [Arabidopsis thaliana]
gi|11994334|dbj|BAB02293.1| 6-4 photolyase [Arabidopsis thaliana]
Length = 537
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD LK G +L + +G P + + +E +LCFE D
Sbjct: 53 PGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYD 112
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
+ + D KVK + + + V VSHTL++P +I+ NG PPL+Y+ +L
Sbjct: 113 TDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVA 168
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ G NR RFLLE L DLD LK G +L + +G P + + +E +LCFE D
Sbjct: 54 GSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDT 113
Query: 182 EAY 184
+ Y
Sbjct: 114 DPY 116
>gi|307190470|gb|EFN74495.1| Cryptochrome-1 [Camponotus floridanus]
Length = 525
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 70/120 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+
Sbjct: 61 FAGSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEE 120
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + C E I+V + VSHTL+ + +I+ N PPLTY + + V+ +
Sbjct: 121 DSEPFGRVRDHNISALCKELGISVVQKVSHTLYKLDEIIERNNGKPPLTYHQFQNIVASM 180
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+D
Sbjct: 63 GSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDS 122
Query: 182 EAY 184
E +
Sbjct: 123 EPF 125
>gi|297743390|emb|CBI36257.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 65/113 (57%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD L+ G +L +++G P + + +E +LCFE D
Sbjct: 53 PGSSRAGLNRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCLKEWEVKRLCFEYD 112
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
+ + D KVK + + I V VSHTL+D +IQ NG PPL+Y+ +L
Sbjct: 113 TDPYYQALDIKVKNYASAAGIEVFSPVSHTLFDSAEIIQKNGGRPPLSYQSFL 165
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ G NR RFLLE L DLD L+ G +L +++G P + + +E +LCFE D
Sbjct: 54 GSSRAGLNRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCLKEWEVKRLCFEYDT 113
Query: 182 EAY 184
+ Y
Sbjct: 114 DPY 116
>gi|359483005|ref|XP_002285327.2| PREDICTED: (6-4)DNA photolyase [Vitis vinifera]
Length = 564
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 65/113 (57%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD L+ G +L +++G P + + +E +LCFE D
Sbjct: 79 PGSSRAGLNRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCLKEWEVKRLCFEYD 138
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
+ + D KVK + + I V VSHTL+D +IQ NG PPL+Y+ +L
Sbjct: 139 TDPYYQALDIKVKNYASAAGIEVFSPVSHTLFDSAEIIQKNGGRPPLSYQSFL 191
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ G NR RFLLE L DLD L+ G +L +++G P + + +E +LCFE D
Sbjct: 80 GSSRAGLNRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCLKEWEVKRLCFEYDT 139
Query: 182 EAY 184
+ Y
Sbjct: 140 DPY 142
>gi|66910245|gb|AAH96780.1| Cry2b protein [Danio rerio]
gi|197247271|gb|AAI64795.1| Cry2b protein [Danio rerio]
Length = 639
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 70/120 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G ++G NR+RFLL+ L DLD L+ LF+++G P IF +L +E ++L FE
Sbjct: 41 FAGASNLGVNRWRFLLQSLEDLDASLRKLNSCLFVIRGQPADIFPRLFKEWKVSRLTFEF 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PLTYK + VS +
Sbjct: 101 DSEPFGKERDAAIKKLACEAGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLVSSM 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G ++G NR+RFLL+ L DLD L+ LF+++G P IF +L +E ++L FE D
Sbjct: 43 GASNLGVNRWRFLLQSLEDLDASLRKLNSCLFVIRGQPADIFPRLFKEWKVSRLTFEFDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|19772572|gb|AAL46564.1| cryptochrome 2 [Gallus gallus]
Length = 531
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 68/116 (58%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+ +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D
Sbjct: 1 ASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEYDS 60
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
E +RD + K E + V SHTL++ + +I+ NGN PPLTYK + +S
Sbjct: 61 EPFGKERDAAIIKLAKEAGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIIS 116
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D
Sbjct: 1 ASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEYDS 60
Query: 182 EAY 184
E +
Sbjct: 61 EPF 63
>gi|307611921|ref|NP_001182627.1| cryptochrome 2 [Bombyx mori]
gi|306416110|gb|ADM86933.1| cryptochrome 2 [Bombyx mori]
gi|306416114|gb|ADM86935.1| cryptochrome 2 [Bombyx mori]
Length = 730
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 68/120 (56%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + ++G N++RFLL+CL DLD+ LK +LF+V+G P KL RE T L FE+
Sbjct: 71 FASSSNVGINKWRFLLQCLEDLDKSLKKLNSRLFVVRGQPADALPKLFREWGTTALTFEE 130
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + C E ITV VSHTL+ + +I+ NG PLTY + ++ +
Sbjct: 131 DPEPYGRVRDHNIISKCREVGITVTSRVSHTLYKLDKIIERNGGKAPLTYHQFQALIASM 190
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ ++G N++RFLL+CL DLD+ LK +LF+V+G P KL RE T L FE+D
Sbjct: 73 SSSNVGINKWRFLLQCLEDLDKSLKKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDP 132
Query: 182 EAY 184
E Y
Sbjct: 133 EPY 135
>gi|15341194|gb|AAK94667.1| cryptochrome 2b [Xenopus laevis]
Length = 570
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/118 (40%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + G NR+RFLL+ L DLD L+ +LF+V+G P +F KL +E ++L FE
Sbjct: 45 FAASSSGGVNRWRFLLQSLEDLDSSLRKLNSRLFVVRGQPADVFPKLFKEWGVSRLTFEY 104
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + VI+ NG+ PPLTYK + +S
Sbjct: 105 DSEPFGKERDAVIMKLAKEAGVEVIVENSHTLYDLDRVIELNGHSPPLTYKRFQAIIS 162
Score = 58.9 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
G NR+RFLL+ L DLD L+ +LF+V+G P +F KL +E ++L FE D E +
Sbjct: 52 GVNRWRFLLQSLEDLDSSLRKLNSRLFVVRGQPADVFPKLFKEWGVSRLTFEYDSEPF 109
>gi|156393374|ref|XP_001636303.1| predicted protein [Nematostella vectensis]
gi|156223405|gb|EDO44240.1| predicted protein [Nematostella vectensis]
Length = 533
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 70/116 (60%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
+IG R+RF+LE LADLD LK +LF+V+G P +F KL +E +KL FE D
Sbjct: 50 NIGVVRWRFILESLADLDNNLKKLNSRLFVVRGRPSEVFPKLFKEWKISKLTFEVDTTEP 109
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
K+D +V K + + +++ VSHTL+D + ++ NG PLTYK + VS +G
Sbjct: 110 ARKQDAEVLKIANKLGVDIEQRVSHTLYDLDRIVNKNGGTAPLTYKKFQSIVSSLG 165
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 99 VIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGS 158
+T+ V PL Y+ + +IG R+RF+LE LADLD LK +LF+V+G
Sbjct: 28 AFETSQTVRPL----YVLDPDVLKNGNIGVVRWRFILESLADLDNNLKKLNSRLFVVRGR 83
Query: 159 PISIFQKLKRELNFTKLCFEQDC 181
P +F KL +E +KL FE D
Sbjct: 84 PSEVFPKLFKEWKISKLTFEVDT 106
>gi|28279917|gb|AAH44204.1| Cry5 protein, partial [Danio rerio]
Length = 545
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 66/121 (54%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP IG NR+RFL+E L DLD LK +LF+V+GSP + KL ++ T+L FE
Sbjct: 67 FPKNTRIGINRWRFLIEALKDLDSSLKKLNSRLFVVRGSPTEVLPKLFKQWKITRLTFEV 126
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RDK+V K E + V +SHTL++ + +I N P+TY V +
Sbjct: 127 DTEPYSQSRDKEVMKLAKEYGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAM 186
Query: 122 G 122
G
Sbjct: 187 G 187
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
Y ++L IG NR+RFL+E L DLD LK +LF+V+GSP + KL ++
Sbjct: 58 YPLFLLDPWFPKNTRIGINRWRFLIEALKDLDSSLKKLNSRLFVVRGSPTEVLPKLFKQW 117
Query: 171 NFTKLCFEQDCEAY 184
T+L FE D E Y
Sbjct: 118 KITRLTFEVDTEPY 131
>gi|18858473|ref|NP_571863.1| cryptochrome 5 [Danio rerio]
gi|8698596|dbj|BAA96852.1| 6-4 photolyase [Danio rerio]
Length = 519
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 66/121 (54%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP IG NR+RFL+E L DLD LK +LF+V+GSP + KL ++ T+L FE
Sbjct: 41 FPKNTRIGINRWRFLIEALKDLDSSLKKLNSRLFVVRGSPTEVLPKLFKQWKITRLTFEV 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RDK+V K E + V +SHTL++ + +I N P+TY V +
Sbjct: 101 DTEPYSQSRDKEVMKLAKEYGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAM 160
Query: 122 G 122
G
Sbjct: 161 G 161
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
Y ++L IG NR+RFL+E L DLD LK +LF+V+GSP + KL ++
Sbjct: 32 YPLFLLDPWFPKNTRIGINRWRFLIEALKDLDSSLKKLNSRLFVVRGSPTEVLPKLFKQW 91
Query: 171 NFTKLCFEQDCEAY 184
T+L FE D E Y
Sbjct: 92 KITRLTFEVDTEPY 105
>gi|380017772|ref|XP_003692819.1| PREDICTED: cryptochrome-1-like [Apis florea]
Length = 571
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 70/120 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ +IG N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+
Sbjct: 59 FAGSTNIGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEE 118
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + C E I+V + VSHTL+ + +I+ NG+ PLTY + V+ +
Sbjct: 119 DPEPFGRVRDHNISALCKELGISVVQKVSHTLYKLDEIIERNGDKSPLTYHQFQTVVASM 178
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ +IG N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+D
Sbjct: 61 GSTNIGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDP 120
Query: 182 EAY 184
E +
Sbjct: 121 EPF 123
>gi|332021530|gb|EGI61895.1| Cryptochrome-1 [Acromyrmex echinatior]
Length = 671
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 70/120 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+
Sbjct: 61 FAGSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTDLTFEE 120
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + C E I+V + VSHTL+ + +I+ N PPLTY + + V+ +
Sbjct: 121 DPEPFGRVRDHNISALCKELGISVVQRVSHTLYRLDEIIERNSGKPPLTYHQFQNVVAGM 180
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+D
Sbjct: 63 GSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTDLTFEEDP 122
Query: 182 EAY 184
E +
Sbjct: 123 EPF 125
>gi|327282060|ref|XP_003225762.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis]
Length = 530
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP M + NR+RFL+E L DLD LK +LF+V+G P +F +L + T+L FE
Sbjct: 41 FPKNMQVSINRWRFLIESLKDLDESLKKLNSRLFVVRGRPAEVFPELFTKWKVTRLAFEV 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E + +RD +V + AE+ + V + VSHTL+D E +I N PLTY V+ +
Sbjct: 101 DTEP-YARRDAEVVRLAAEHGVQVIQKVSHTLYDTERIIVENSGKAPLTYTRLQTLVASL 159
Query: 122 G 122
G
Sbjct: 160 G 160
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
M + NR+RFL+E L DLD LK +LF+V+G P +F +L + T+L FE D E
Sbjct: 45 MQVSINRWRFLIESLKDLDESLKKLNSRLFVVRGRPAEVFPELFTKWKVTRLAFEVDTEP 104
Query: 184 Y 184
Y
Sbjct: 105 Y 105
>gi|345326794|ref|XP_001508613.2| PREDICTED: cryptochrome-1-like [Ornithorhynchus anatinus]
Length = 721
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDK 72
FRFLL+CL DLD L+ +LF+++G P +F +L +E N KL E D E +RD
Sbjct: 157 FRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDA 216
Query: 73 KVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
+KK +E + V +SHTL++ + +I+ NG PPLTYK + +S
Sbjct: 217 AIKKLASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLIS 263
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 131 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
FRFLL+CL DLD L+ +LF+++G P +F +L +E N KL E D E +
Sbjct: 157 FRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPF 210
>gi|168002746|ref|XP_001754074.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
subsp. patens]
gi|162694628|gb|EDQ80975.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
subsp. patens]
Length = 526
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 66/113 (58%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ +G NR RFLL+ L DLD L+ HG +L ++ G+P ++ +L + +LCFE D
Sbjct: 51 PGSKLVGVNRIRFLLQSLEDLDENLRKHGSRLLVLHGNPTTVIPELLMKWQINELCFEFD 110
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
E RD +KK + + V VSHTL++P I+ NG PLTY+ +L
Sbjct: 111 TEPYAQDRDADIKKLATKYGVEVFSPVSHTLFNPIDTIRKNGGQTPLTYQAFL 163
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 117 TVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 176
T G+ +G NR RFLL+ L DLD L+ HG +L ++ G+P ++ +L + +LC
Sbjct: 47 TAPSPGSKLVGVNRIRFLLQSLEDLDENLRKHGSRLLVLHGNPTTVIPELLMKWQINELC 106
Query: 177 FEQDCEAY 184
FE D E Y
Sbjct: 107 FEFDTEPY 114
>gi|156353900|ref|XP_001623146.1| predicted protein [Nematostella vectensis]
gi|156209813|gb|EDO31046.1| predicted protein [Nematostella vectensis]
Length = 541
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+ +IG N +RFLL+ L DLD L+ +LF+++G P +F +L RE T+L FE+D
Sbjct: 61 ASSNIGLNLWRFLLQALEDLDDSLRKLNSRLFVIRGQPADVFPRLFREWGITRLTFEEDS 120
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +RD + E + V SHTL+ + +I NG PPLTYK +L + I
Sbjct: 121 EPFGKERDSAICMLAREAGVEVASHRSHTLYHLQGIIDRNGGTPPLTYKKFLSVIEGIA 179
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 113 MYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 172
+Y+ + + +IG N +RFLL+ L DLD L+ +LF+++G P +F +L RE
Sbjct: 52 VYILDTKSVASSNIGLNLWRFLLQALEDLDDSLRKLNSRLFVIRGQPADVFPRLFREWGI 111
Query: 173 TKLCFEQDCEAY 184
T+L FE+D E +
Sbjct: 112 TRLTFEEDSEPF 123
>gi|156361145|ref|XP_001625380.1| predicted protein [Nematostella vectensis]
gi|156212211|gb|EDO33280.1| predicted protein [Nematostella vectensis]
Length = 463
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+ +IG N +RFLL+ L DLD L+ +LF+++G P +F +L RE T+L FE+D
Sbjct: 61 ASSNIGLNLWRFLLQALEDLDDSLRKLNSRLFVIRGQPADVFPRLFREWGITRLTFEEDS 120
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +RD + E + V SHTL+ + +I NG PPLTYK +L + I
Sbjct: 121 EPFGKERDSAICMLAREAGVEVASHRSHTLYHLQGIIDRNGGTPPLTYKKFLSVIEGIA 179
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 113 MYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 172
+Y+ + + +IG N +RFLL+ L DLD L+ +LF+++G P +F +L RE
Sbjct: 52 VYILDTKSVASSNIGLNLWRFLLQALEDLDDSLRKLNSRLFVIRGQPADVFPRLFREWGI 111
Query: 173 TKLCFEQDCEAY 184
T+L FE+D E +
Sbjct: 112 TRLTFEEDSEPF 123
>gi|384248771|gb|EIE22254.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Coccomyxa
subellipsoidea C-169]
Length = 482
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 65/115 (56%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G NR FLLE L DL L++ G L +++G+P + ++ ++ N T+LCFE D E
Sbjct: 52 VGVNRLNFLLESLTDLRSSLQARGSNLLVLRGNPQDVLPRVWKDWNITRLCFEADTEDYA 111
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
+RD K+ E I V VSHTL+D V+ NG PLTYK + ++ +G
Sbjct: 112 EERDTKITAAAQEAGIEVISCVSHTLYDTSDVVAKNGGKAPLTYKGFEKAITALG 166
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR FLLE L DL L++ G L +++G+P + ++ ++ N T+LCFE D E Y
Sbjct: 52 VGVNRLNFLLESLTDLRSSLQARGSNLLVLRGNPQDVLPRVWKDWNITRLCFEADTEDY 110
>gi|321471119|gb|EFX82092.1| CRY-M [Daphnia pulex]
Length = 553
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 71/120 (59%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++ N++RFLLE L DLD+ L+ +LF+++G P + KL +E T L FE+
Sbjct: 49 FAGSSNVDINKWRFLLESLEDLDQNLRKLNSRLFVIRGQPAGVLPKLFKEWETTCLTFEE 108
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD+ + C + NI V SHTL+ P+ +I+ NG PLTY+ + + ++ +
Sbjct: 109 DPEPFGRVRDQNIITMCKDFNIEVITRASHTLYHPQKIIEKNGGKAPLTYRQFQNIIASV 168
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++ N++RFLLE L DLD+ L+ +LF+++G P + KL +E T L FE+D
Sbjct: 51 GSSNVDINKWRFLLESLEDLDQNLRKLNSRLFVIRGQPAGVLPKLFKEWETTCLTFEEDP 110
Query: 182 EAY 184
E +
Sbjct: 111 EPF 113
>gi|159479960|ref|XP_001698054.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
gi|158273853|gb|EDO99639.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
Length = 595
Score = 92.8 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 42/115 (36%), Positives = 66/115 (57%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ NR+ FLLE L DL R ++ G +L +++G P +F ++ RE T+LCFE D E
Sbjct: 51 VSVNRYNFLLESLEDLQRSFQARGSRLLVLRGKPEEVFPRVFREWGVTQLCFEHDTEPYA 110
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
RD V++ AE + V +SHTL+D ++++ NG PLT + + V +G
Sbjct: 111 KVRDAAVRRLAAEAGVEVVTPISHTLYDTDMLVARNGGAAPLTMQSFTKLVDRVG 165
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+ NR+ FLLE L DL R ++ G +L +++G P +F ++ RE T+LCFE D E Y
Sbjct: 51 VSVNRYNFLLESLEDLQRSFQARGSRLLVLRGKPEEVFPRVFREWGVTQLCFEHDTEPY 109
>gi|404313305|gb|AFR54427.1| cryptochrome 2 [Mythimna separata]
Length = 757
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 67/120 (55%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + ++G N++RFLL+CL DLD L+ +LF+V+G P KL RE T L FE+
Sbjct: 60 FASSSNVGINKWRFLLQCLEDLDSSLRKLNSRLFVVRGQPADALPKLFREWGTTALSFEE 119
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + C E ITV VSHTL+ + +I+ NG PLTY + ++ +
Sbjct: 120 DPEPYGRVRDHNIMSKCREVGITVTSRVSHTLYKLDQIIERNGGKAPLTYHQFQALIASM 179
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ ++G N++RFLL+CL DLD L+ +LF+V+G P KL RE T L FE+D
Sbjct: 62 SSSNVGINKWRFLLQCLEDLDSSLRKLNSRLFVVRGQPADALPKLFREWGTTALSFEEDP 121
Query: 182 EAY 184
E Y
Sbjct: 122 EPY 124
>gi|158293404|ref|XP_314748.3| AGAP008651-PA [Anopheles gambiae str. PEST]
gi|157016689|gb|EAA10141.3| AGAP008651-PA [Anopheles gambiae str. PEST]
Length = 556
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 71/115 (61%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+ +G NR+RFL + LA+LD L+S +L++V+G+P+ +F KL + N + L +E D E
Sbjct: 53 LRVGPNRWRFLQQTLANLDENLRSINSRLYVVRGNPVEVFPKLFADWNVSLLTYEHDIEP 112
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
KRD V++ ++ + V SHT++DPE +++ NG PPLTY+ Y S
Sbjct: 113 YAVKRDSTVEEQARKHWVEVHIEKSHTIFDPEGIVKKNGGKPPLTYQRYATLASA 167
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
+ +G NR+RFL + LA+LD L+S +L++V+G+P+ +F KL + N + L +E D E
Sbjct: 53 LRVGPNRWRFLQQTLANLDENLRSINSRLYVVRGNPVEVFPKLFADWNVSLLTYEHDIEP 112
Query: 184 Y 184
Y
Sbjct: 113 Y 113
>gi|386762985|gb|AFJ22639.1| cryptochrome 2 [Agrotis ipsilon]
Length = 812
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 64/113 (56%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + ++G N++RFLL+CL DLD L+ +LF+V+G P KL RE T L FE+
Sbjct: 98 FASSSNVGINKWRFLLQCLEDLDSSLRKLNSRLFVVRGQPADALPKLFREWGTTALSFEE 157
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
D E RD + C E ITV VSHTL+ + +I+ NG PLTY +
Sbjct: 158 DPEPYGRVRDHNIMSKCREVGITVTSRVSHTLYKLDQIIERNGGKAPLTYHQF 210
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ ++G N++RFLL+CL DLD L+ +LF+V+G P KL RE T L FE+D
Sbjct: 100 SSSNVGINKWRFLLQCLEDLDSSLRKLNSRLFVVRGQPADALPKLFREWGTTALSFEEDP 159
Query: 182 EAY 184
E Y
Sbjct: 160 EPY 162
>gi|399220401|gb|AFP33464.1| cryptochrome 1 [Dicentrarchus labrax]
Length = 567
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 67/113 (59%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL CL DLD L+ +L++++G P +F +L +E +L +E
Sbjct: 41 FAGSSNVGINRWRFLLHCLEDLDNSLRKLNSRLYVIRGQPTDVFPRLFKEWQINRLSYEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
D E +RD ++K E + V VSHTL++ +I+ N PPLTYK +
Sbjct: 101 DSEPFGKERDAAIQKLACEAEVEVMVQVSHTLYNLVKIIELNDGHPPLTYKRF 153
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL CL DLD L+ +L++++G P +F +L +E +L +E D
Sbjct: 43 GSSNVGINRWRFLLHCLEDLDNSLRKLNSRLYVIRGQPTDVFPRLFKEWQINRLSYEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>gi|148533563|gb|ABQ84983.1| antennal cryptochrome 2 [Spodoptera littoralis]
Length = 625
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 64/113 (56%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + ++G N++RFLL+CL DLD L+ +LF+V+G P KL RE T L FE+
Sbjct: 75 FASSSNVGINKWRFLLQCLEDLDSSLRKLNSRLFVVRGQPADALPKLFREWGTTALTFEE 134
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
D E RD + C E ITV VSHTL+ + +I+ NG PLTY +
Sbjct: 135 DPEPYGRVRDHNIMSKCREVGITVTSRVSHTLYKLDQIIERNGGKAPLTYHQF 187
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ ++G N++RFLL+CL DLD L+ +LF+V+G P KL RE T L FE+D
Sbjct: 77 SSSNVGINKWRFLLQCLEDLDSSLRKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDP 136
Query: 182 EAY 184
E Y
Sbjct: 137 EPY 139
>gi|449436599|ref|XP_004136080.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus]
Length = 549
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 64/112 (57%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G+ G NR RFLLE L DLD LK G +L ++ G P + + +E N KLCFE D
Sbjct: 54 GSSRAGLNRIRFLLESLVDLDLNLKKLGSRLLVLHGEPGEVLIRCLKEWNVKKLCFEYDT 113
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
+ + D +V+ + I V VSHTL++P +IQ NG PPL+Y+ +L
Sbjct: 114 DPYYQALDIRVQNHASAAGIEVFSPVSHTLFNPADIIQKNGGSPPLSYQSFL 165
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%)
Query: 120 CIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179
+G+ G NR RFLLE L DLD LK G +L ++ G P + + +E N KLCFE
Sbjct: 52 SLGSSRAGLNRIRFLLESLVDLDLNLKKLGSRLLVLHGEPGEVLIRCLKEWNVKKLCFEY 111
Query: 180 DCEAY 184
D + Y
Sbjct: 112 DTDPY 116
>gi|380254429|dbj|BAL72539.1| cryptochrome3 [Siganus guttatus]
Length = 507
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLLE L DLD LK +LF+V+G P +F +L +E T+L FE
Sbjct: 41 FAGSANVGINRWRFLLEALEDLDNSLKKLNSRLFVVKGQPTDVFPRLLKEWKVTRLTFEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
D E +RD + K E + SHTL++ + +I+ N N PPLT+K +
Sbjct: 101 DPEPYGKERDGAIIKMAQEFGVETIVRNSHTLYNLDRIIEMNSNNPPLTFKRF 153
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLLE L DLD LK +LF+V+G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSANVGINRWRFLLEALEDLDNSLKKLNSRLFVVKGQPTDVFPRLLK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E T+L FE D E Y
Sbjct: 90 EWKVTRLTFEYDPEPY 105
>gi|333755446|gb|ADN94465.2| cryptochrome 2 [Helicoverpa armigera]
Length = 657
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 64/113 (56%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + ++G N++RFLL+CL DLD L+ +LF+V+G P KL RE T L FE+
Sbjct: 74 FASSSNVGINKWRFLLQCLEDLDSSLRKLNSRLFVVRGQPADALPKLFREWGTTALTFEE 133
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
D E RD + C E ITV VSHTL+ + +I+ NG PLTY +
Sbjct: 134 DPEPYGRVRDHNIMSKCREVGITVTSRVSHTLYKLDQIIERNGGKAPLTYHQF 186
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ ++G N++RFLL+CL DLD L+ +LF+V+G P KL RE T L FE+D
Sbjct: 76 SSSNVGINKWRFLLQCLEDLDSSLRKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDP 135
Query: 182 EAY 184
E Y
Sbjct: 136 EPY 138
>gi|157115313|ref|XP_001658195.1| DNA photolyase [Aedes aegypti]
gi|108883518|gb|EAT47743.1| AAEL001175-PA [Aedes aegypti]
Length = 553
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 72/116 (62%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+ +G NR+RFL + LADLDR L+ +L++V+G+P+ +F KL +E N + L FE D E
Sbjct: 53 LRVGPNRWRFLQQTLADLDRNLRKINSRLYVVRGNPVDVFPKLFQEWNVSFLTFEHDIEP 112
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
KRD V++ ++ + ++ S T++DP+ +++ N PPLTY+ Y S +
Sbjct: 113 YSIKRDATVEEQAKKHGVKIQIEKSLTIYDPDAILKMNAGRPPLTYQKYGSLASTL 168
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 47/72 (65%)
Query: 113 MYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 172
+++ + + + +G NR+RFL + LADLDR L+ +L++V+G+P+ +F KL +E N
Sbjct: 42 VFILDPAIVQWLRVGPNRWRFLQQTLADLDRNLRKINSRLYVVRGNPVDVFPKLFQEWNV 101
Query: 173 TKLCFEQDCEAY 184
+ L FE D E Y
Sbjct: 102 SFLTFEHDIEPY 113
>gi|449491122|ref|XP_004158807.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus]
Length = 544
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 64/112 (57%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G+ G NR RFLLE L DLD LK G +L ++ G P + + +E N KLCFE D
Sbjct: 54 GSSRAGLNRIRFLLESLVDLDLNLKKLGSRLLVLHGEPGEVLIRCLKEWNVKKLCFEYDT 113
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
+ + D +V+ + I V VSHTL++P +IQ NG PPL+Y+ +L
Sbjct: 114 DPYYQALDIRVQNHASAAGIEVFSPVSHTLFNPADIIQKNGGSPPLSYQSFL 165
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%)
Query: 120 CIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179
+G+ G NR RFLLE L DLD LK G +L ++ G P + + +E N KLCFE
Sbjct: 52 SLGSSRAGLNRIRFLLESLVDLDLNLKKLGSRLLVLHGEPGEVLIRCLKEWNVKKLCFEY 111
Query: 180 DCEAY 184
D + Y
Sbjct: 112 DTDPY 116
>gi|147903319|ref|NP_001082139.1| cryptochrome 2a [Xenopus laevis]
gi|46249526|gb|AAH68732.1| LOC398246 protein [Xenopus laevis]
Length = 568
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E ++L FE
Sbjct: 45 FAASSSGGVNRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEY 104
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG+ PPLTYK + +S
Sbjct: 105 DSEPFGKERDAVIMKLAKEGGVEVVVENSHTLYDLDRIIELNGHSPPLTYKRFQAIIS 162
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E ++L FE D E +
Sbjct: 52 GVNRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEYDSEPF 109
>gi|326513908|dbj|BAJ92104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 546
Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 4/119 (3%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGS---PISIFQKLKRELNFTKLCF 59
PG+ H G R RFLLE L DLD +L+ G +L +++ ++ LK + N KLCF
Sbjct: 61 PGSAHAGVARVRFLLESLLDLDARLRCLGSRLLVLRARDDVSDAVCAALK-DWNIGKLCF 119
Query: 60 EQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
E D E RDK+V + A + I V VSHTL+DP +I+ NG PPLTY+ ++ T
Sbjct: 120 ESDTEPYALARDKRVTDFAAASGIEVFSPVSHTLFDPAEIIEKNGGRPPLTYQSFVATA 178
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGS---PISIFQKLKRELNFTKLCFE 178
G+ H G R RFLLE L DLD +L+ G +L +++ ++ LK + N KLCFE
Sbjct: 62 GSAHAGVARVRFLLESLLDLDARLRCLGSRLLVLRARDDVSDAVCAALK-DWNIGKLCFE 120
Query: 179 QDCEAY 184
D E Y
Sbjct: 121 SDTEPY 126
>gi|145881069|gb|ABP97098.1| cryptochrome CRY1 [Acropora millepora]
Length = 552
Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 68/116 (58%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
IG N +RFLL+ L D+D L+ +LF+V+G P +F +L RE + L FE+D E
Sbjct: 71 IGLNLWRFLLQSLEDVDDSLRKLNSRLFVVRGQPADVFPRLFREWKTSFLTFEEDSEPFG 130
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGT 123
++D ++ E+ + V SHTL+DP+++I+ N PLTYK +L V +G
Sbjct: 131 REKDAAIRLLAQESGVEVAVGRSHTLYDPQLIIKHNSGTAPLTYKKFLAIVRSLGN 186
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
IG N +RFLL+ L D+D L+ +LF+V+G P +F +L RE + L FE+D E +
Sbjct: 71 IGLNLWRFLLQSLEDVDDSLRKLNSRLFVVRGQPADVFPRLFREWKTSFLTFEEDSEPF 129
>gi|195119085|ref|XP_002004062.1| GI19664 [Drosophila mojavensis]
gi|193914637|gb|EDW13504.1| GI19664 [Drosophila mojavensis]
Length = 532
Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 65/113 (57%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
M +G NR+RFL + L DLD+ LK +L+IV+G P+ IF L N L FE D E
Sbjct: 54 MKVGANRWRFLQQSLLDLDKNLKELNSRLYIVRGKPVDIFPNLFDRWNVELLTFETDIEP 113
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
KRDK V+ A + + V SHT+++PE+VI N P+TY+ +L V
Sbjct: 114 YAVKRDKAVQDIAAAHGVKVDTHCSHTIYNPEIVIAKNFGRAPITYQKFLSVV 166
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%)
Query: 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
M +G NR+RFL + L DLD+ LK +L+IV+G P+ IF L N L FE D E
Sbjct: 54 MKVGANRWRFLQQSLLDLDKNLKELNSRLYIVRGKPVDIFPNLFDRWNVELLTFETDIEP 113
Query: 184 Y 184
Y
Sbjct: 114 Y 114
>gi|291290513|dbj|BAI82612.1| cryptochrome 2 [Xenopus (Silurana) tropicalis]
Length = 557
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E ++L FE
Sbjct: 39 FAASSSGGVNRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEY 98
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG+ PPLTYK + +S
Sbjct: 99 DSEPFGKERDAVIMKLAKEAGVEVIVENSHTLYDLDRIIELNGHSPPLTYKRFQAIIS 156
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E ++L FE D E +
Sbjct: 46 GVNRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEYDSEPF 103
>gi|195387030|ref|XP_002052207.1| GJ17431 [Drosophila virilis]
gi|194148664|gb|EDW64362.1| GJ17431 [Drosophila virilis]
Length = 541
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 68/113 (60%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
M +G NR+RFL + L DLD++LK +L+IV+G P+ +F +L N L FE D E
Sbjct: 54 MQVGANRWRFLQQSLVDLDKKLKELNSRLYIVRGKPVDVFPELFERWNVQLLTFESDIEP 113
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
+RD V+K +E+ + V SHT+++PE+VI N P+TY+ +L V
Sbjct: 114 YALQRDTTVQKIASEHGVKVDTHCSHTIYNPELVIAKNLGKAPVTYQKFLGIV 166
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
M +G NR+RFL + L DLD++LK +L+IV+G P+ +F +L N L FE D E
Sbjct: 54 MQVGANRWRFLQQSLVDLDKKLKELNSRLYIVRGKPVDVFPELFERWNVQLLTFESDIEP 113
Query: 184 Y 184
Y
Sbjct: 114 Y 114
>gi|195433475|ref|XP_002064736.1| GK15094 [Drosophila willistoni]
gi|194160821|gb|EDW75722.1| GK15094 [Drosophila willistoni]
Length = 546
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 66/113 (58%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
M +G NR+RFL + L DLD+QL+ +L++V+G PI +F +L + N L FE D E
Sbjct: 55 MQVGANRWRFLQQTLDDLDKQLRQLNSRLYVVRGKPIEVFPRLFKSWNVELLTFESDIEP 114
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
RD V+K I V+ SHT+++PE+VI N P+TY+ +L V
Sbjct: 115 YAQTRDAAVQKIAKAAGIKVETHCSHTIYNPELVIAKNLGKAPITYQKFLALV 167
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
M +G NR+RFL + L DLD+QL+ +L++V+G PI +F +L + N L FE D E
Sbjct: 55 MQVGANRWRFLQQTLDDLDKQLRQLNSRLYVVRGKPIEVFPRLFKSWNVELLTFESDIEP 114
Query: 184 Y 184
Y
Sbjct: 115 Y 115
>gi|326912139|ref|XP_003202411.1| PREDICTED: cryptochrome-1 [Meleagris gallopavo]
Length = 611
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 64/106 (60%)
Query: 14 RFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKK 73
RFLL+CL DLD L+ +LF+++G P +F +L +E + KL E D E +RD
Sbjct: 43 RFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWSIAKLSIEYDSEPFGKERDAA 102
Query: 74 VKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
+KK +E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 103 IKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 148
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 132 RFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
RFLL+CL DLD L+ +LF+++G P +F +L +E + KL E D E +
Sbjct: 43 RFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWSIAKLSIEYDSEPF 95
>gi|77166866|gb|ABA62409.1| cryptochrome 2 [Danaus plexippus]
gi|357623166|gb|EHJ74426.1| cryptochrome 2 [Danaus plexippus]
Length = 742
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 67/120 (55%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + ++G N++RFLL+CL DLD+ L+ +LF+V+G P KL RE T L FE+
Sbjct: 67 FASSSNVGINKWRFLLQCLEDLDKNLRKLNSRLFVVRGQPADALPKLFREWGTTALTFEE 126
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + C E I V VSHTL+ + +I+ NG PLTY + ++ +
Sbjct: 127 DPEPYGRVRDHNIMTKCREVGIQVTSRVSHTLYKLDDIIEKNGGKAPLTYHQFQALIASM 186
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ ++G N++RFLL+CL DLD+ L+ +LF+V+G P KL RE T L FE+D
Sbjct: 69 SSSNVGINKWRFLLQCLEDLDKNLRKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDP 128
Query: 182 EAY 184
E Y
Sbjct: 129 EPY 131
>gi|133754342|gb|ABO38435.1| cryptochrome 2 [Antheraea pernyi]
Length = 788
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 66/120 (55%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + ++G N++RFLL+CL DLD LK +LF+V+G P KL RE T L FE+
Sbjct: 72 FASSSNVGINKWRFLLQCLEDLDSSLKKLNSRLFVVRGQPADALPKLFREWGTTALTFEE 131
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + C E I V VSHTL+ + +I+ NG PLTY + ++ +
Sbjct: 132 DPEPYGRVRDHNITTKCREVGINVISRVSHTLYKLDKIIERNGGKAPLTYHQFQALIASM 191
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ ++G N++RFLL+CL DLD LK +LF+V+G P KL RE T L FE+D
Sbjct: 74 SSSNVGINKWRFLLQCLEDLDSSLKKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDP 133
Query: 182 EAY 184
E Y
Sbjct: 134 EPY 136
>gi|116256289|gb|ABJ90474.1| cryptochrome 1 [Equus caballus]
Length = 378
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 65/111 (58%)
Query: 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVK 75
LL+CL DLD L+ +LF+++G P +F +L +E N TKL E D E +RD +K
Sbjct: 2 LLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIK 61
Query: 76 KWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHI 126
K E + V +SHTL+D + +I+ NG PPLTYK + +S + + I
Sbjct: 62 KLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEI 112
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 134 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
LL+CL DLD L+ +LF+++G P +F +L +E N TKL E D E +
Sbjct: 2 LLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPF 52
>gi|406507547|gb|AFS34617.1| cryptochrome 2 [Clunio marinus]
Length = 657
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 69/120 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLD+ L+ +LF+++G P L ++ N T L FE+
Sbjct: 50 FAGSSNVGINKWRFLLQCLEDLDQNLRRLNSRLFVIRGQPAEKLPMLFKKWNTTCLTFEE 109
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + + C E NI V VSHTL+ E +I+ N PLTY + ++ +
Sbjct: 110 DPEPFSKVRDNNITEMCKELNIEVISAVSHTLYKLEKIIEKNNGKAPLTYHQFQAIIASM 169
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL DLD+ L+ +LF+++G P L ++ N T L FE+D
Sbjct: 52 GSSNVGINKWRFLLQCLEDLDQNLRRLNSRLFVIRGQPAEKLPMLFKKWNTTCLTFEEDP 111
Query: 182 EAY 184
E +
Sbjct: 112 EPF 114
>gi|195148597|ref|XP_002015257.1| GL19602 [Drosophila persimilis]
gi|194107210|gb|EDW29253.1| GL19602 [Drosophila persimilis]
Length = 204
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 65/114 (57%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
M +G NR+RFL + L DLD+QL+ +LF+V+G P+ +F ++ + L FE D E
Sbjct: 54 MQVGANRWRFLQQTLHDLDQQLRKLNSRLFVVRGKPVDVFPRVFKSWRVELLTFETDIEP 113
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
+RD V+K I V SHT+++PE+VI N P+TY+ +L V
Sbjct: 114 YALQRDAAVQKLAKAEGIKVDTHCSHTIYNPELVIAKNMGKAPITYQKFLSVVD 167
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
M +G NR+RFL + L DLD+QL+ +LF+V+G P+ +F ++ + L FE D E
Sbjct: 54 MQVGANRWRFLQQTLHDLDQQLRKLNSRLFVVRGKPVDVFPRVFKSWRVELLTFETDIEP 113
Query: 184 Y 184
Y
Sbjct: 114 Y 114
>gi|30088882|gb|AAP13561.1| cryptochrome 2 [Rana catesbeiana]
Length = 543
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 64/109 (58%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
NR+RFLL+ L DLD L+ G +LF+ +G P +F +L +E T+L F+ E +R
Sbjct: 55 NRWRFLLQSLEDLDSSLRKLGSRLFVGRGQPADVFPRLFKEWGVTRLTFQYYSEPFGKER 114
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D + K E + V SHTL+D + +I+ NGN PPLTYK + VS
Sbjct: 115 DAAIMKLAKEAGVEVIVESSHTLYDLDKIIELNGNSPPLTYKRFQAIVS 163
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
NR+RFLL+ L DLD L+ G +LF+ +G P +F +L +E T+L F+ E +
Sbjct: 55 NRWRFLLQSLEDLDSSLRKLGSRLFVGRGQPADVFPRLFKEWGVTRLTFQYYSEPF 110
>gi|195030094|ref|XP_001987903.1| GH10854 [Drosophila grimshawi]
gi|193903903|gb|EDW02770.1| GH10854 [Drosophila grimshawi]
Length = 538
Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 4/140 (2%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
M +G NR+RFL + L+DLD+QL++ +LF+V+G P+ IF L L +E D E
Sbjct: 54 MQVGANRWRFLQQSLSDLDQQLRALNTRLFVVRGKPVDIFPGLFERWQVQLLTYETDIEP 113
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMH 125
RD V++ A + V SHT+++PE+VI N PP+TY+ +L V +
Sbjct: 114 YAVLRDAAVQQLAASQGVKVDTHCSHTIYNPELVIVRNLGKPPITYQKFLGIVEKLKLPK 173
Query: 126 IGYNRFRFL---LECLADLD 142
+ N+ + L ++ LAD D
Sbjct: 174 V-LNKPKKLPDGMQPLADSD 192
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
M +G NR+RFL + L+DLD+QL++ +LF+V+G P+ IF L L +E D E
Sbjct: 54 MQVGANRWRFLQQSLSDLDQQLRALNTRLFVVRGKPVDIFPGLFERWQVQLLTYETDIEP 113
Query: 184 Y 184
Y
Sbjct: 114 Y 114
>gi|410926431|ref|XP_003976682.1| PREDICTED: cryptochrome-2-like [Takifugu rubripes]
Length = 718
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 67/118 (56%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G ++G NR+RFLLE L DLD L+ +L +V+G P +F +L ++ T+L FE
Sbjct: 41 FAGAANVGINRWRFLLEALEDLDCSLRKLSSRLLVVRGQPTDVFPRLLKDWKVTRLTFEF 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K + + SHTL++ + +I+ N N PPLT+K + VS
Sbjct: 101 DPEPYGKERDGAIIKLAQQFGVETIVRNSHTLYNLDRIIEVNNNSPPLTFKRFQTIVS 158
Score = 60.1 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G ++G NR+RFLLE L DLD L+ +L +V+G P +F +L ++ T+L FE D
Sbjct: 43 GAANVGINRWRFLLEALEDLDCSLRKLSSRLLVVRGQPTDVFPRLLKDWKVTRLTFEFDP 102
Query: 182 EAY 184
E Y
Sbjct: 103 EPY 105
>gi|194759941|ref|XP_001962202.1| GF14557 [Drosophila ananassae]
gi|190615899|gb|EDV31423.1| GF14557 [Drosophila ananassae]
Length = 539
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 66/113 (58%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
M +G NR+RFL + L DLD+QL+ G +LF+V+G P +F ++ + L FE D E
Sbjct: 54 MQVGANRWRFLQQTLHDLDQQLQKLGSRLFVVRGKPAEVFPRIFKSWRVELLTFETDIEP 113
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
RD V+K + + V+ SHT+++PE+VI N P+TY+ +L V
Sbjct: 114 YSLARDSAVQKLAKSDGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIV 166
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 104 GNVPPLTY---KMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPI 160
N P Y +++ + M +G NR+RFL + L DLD+QL+ G +LF+V+G P
Sbjct: 31 ANTAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTLHDLDQQLQKLGSRLFVVRGKPA 90
Query: 161 SIFQKLKRELNFTKLCFEQDCEAY 184
+F ++ + L FE D E Y
Sbjct: 91 EVFPRIFKSWRVELLTFETDIEPY 114
>gi|125986217|ref|XP_001356872.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
gi|54645198|gb|EAL33938.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
Length = 533
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 65/114 (57%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
M +G NR+RFL + L DLD+QL+ +LF+V+G P+ +F ++ + L FE D E
Sbjct: 54 MQVGANRWRFLQQTLHDLDQQLRKLNSRLFVVRGKPVDVFPRVFKSWRVELLTFETDIEP 113
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
+RD V+K I V SHT+++PE+VI N P+TY+ +L V
Sbjct: 114 YALQRDAAVQKLAKAEGIKVDTHCSHTIYNPELVIAKNMGKAPITYQKFLSVVD 167
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
M +G NR+RFL + L DLD+QL+ +LF+V+G P+ +F ++ + L FE D E
Sbjct: 54 MQVGANRWRFLQQTLHDLDQQLRKLNSRLFVVRGKPVDVFPRVFKSWRVELLTFETDIEP 113
Query: 184 Y 184
Y
Sbjct: 114 Y 114
>gi|194878837|ref|XP_001974136.1| GG21562 [Drosophila erecta]
gi|190657323|gb|EDV54536.1| GG21562 [Drosophila erecta]
Length = 540
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 64/113 (56%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
M +G NR+RFL + L DLD QL+ G +LF+V+G P +F ++ + L FE D E
Sbjct: 54 MQVGANRWRFLQQALEDLDNQLRKLGSRLFVVRGKPAEVFPRIFKSWRVEILTFETDIEP 113
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
RD V+K + V+ SHT+++PE+VI N P+TY+ +L V
Sbjct: 114 YSLSRDASVQKLAKAAGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIV 166
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 100 IQTNGNVPPLTY---KMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ 156
I + N P Y +++ + M +G NR+RFL + L DLD QL+ G +LF+V+
Sbjct: 27 IFSAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQALEDLDNQLRKLGSRLFVVR 86
Query: 157 GSPISIFQKLKRELNFTKLCFEQDCEAY 184
G P +F ++ + L FE D E Y
Sbjct: 87 GKPAEVFPRIFKSWRVEILTFETDIEPY 114
>gi|61816948|gb|AAX56342.1| 6-4 photolyase [Dunaliella salina]
Length = 600
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 68/115 (59%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G NR++FLLE L+DL+ L S G QL +++G+P + ++ R+ + KLC+E D E
Sbjct: 95 VGVNRYQFLLESLSDLNSSLTSLGSQLLVLRGTPEEVIPRVLRDWSIKKLCYEIDTEPYA 154
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
RD +V E + VK+ SHTL+D +++++ N PLT + + V +G
Sbjct: 155 KARDARVDDMAREAGVEVKKHWSHTLYDTDMLVRENKGKAPLTMQAFEKLVDRVG 209
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR++FLLE L+DL+ L S G QL +++G+P + ++ R+ + KLC+E D E Y
Sbjct: 95 VGVNRYQFLLESLSDLNSSLTSLGSQLLVLRGTPEEVIPRVLRDWSIKKLCYEIDTEPY 153
>gi|195484786|ref|XP_002090823.1| GE12583 [Drosophila yakuba]
gi|194176924|gb|EDW90535.1| GE12583 [Drosophila yakuba]
Length = 540
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D E
Sbjct: 54 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPADVFPRIFKSWRVEILSFETDIEP 113
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
RD V+K + V+ + SHT+++PE+VI N P+TY+ +L V
Sbjct: 114 YSMTRDAAVQKLAKTEGVKVETYCSHTIYNPELVIAKNLGKAPITYQKFLGIV 166
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 100 IQTNGNVPPLTY---KMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ 156
I + N P Y +++ + M +G NR+RFL + L DLD QL+ +LF+V+
Sbjct: 27 IFSAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVR 86
Query: 157 GSPISIFQKLKRELNFTKLCFEQDCEAY 184
G P +F ++ + L FE D E Y
Sbjct: 87 GKPADVFPRIFKSWRVEILSFETDIEPY 114
>gi|449018268|dbj|BAM81670.1| 6-4 photolyase [Cyanidioschyzon merolae strain 10D]
Length = 519
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G NR FLLECL DLD+QL+ +LF+++G+P+ R+ + L FE D E
Sbjct: 54 VGVNRMNFLLECLQDLDQQLRKLHSRLFVLRGNPLEQLPVFFRKYHTRLLTFEFDTEPYA 113
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVP-PLTYKMYLHTVS 119
+RD +V++ CAE I V+ +HTL+DPE + + G+ P PLTYK + V+
Sbjct: 114 KQRDTQVRRLCAELGIEVRTRATHTLYDPEDIRRELGDRPTPLTYKSFYAFVT 166
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR FLLECL DLD+QL+ +LF+++G+P+ R+ + L FE D E Y
Sbjct: 54 VGVNRMNFLLECLQDLDQQLRKLHSRLFVLRGNPLEQLPVFFRKYHTRLLTFEFDTEPY 112
>gi|443710319|gb|ELU04573.1| hypothetical protein CAPTEDRAFT_178510 [Capitella teleta]
Length = 597
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 66/113 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G +G N++RFLL+ L DLD +L+ +LF+++G P IF KL ++ + + L FE+
Sbjct: 56 FAGASQVGINKWRFLLQSLEDLDSRLRKLNSRLFVIRGQPTDIFPKLFQKWDISALAFEE 115
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
D E +RD V + I V SHTL++ + ++ N VPPLTYK +
Sbjct: 116 DPEPFGKERDSAVCTKSQDAGIEVIIKTSHTLFNLQKILDKNSGVPPLTYKRF 168
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G +G N++RFLL+ L DLD +L+ +LF+++G P IF KL ++ + + L FE+D
Sbjct: 58 GASQVGINKWRFLLQSLEDLDSRLRKLNSRLFVIRGQPTDIFPKLFQKWDISALAFEEDP 117
Query: 182 EAY 184
E +
Sbjct: 118 EPF 120
>gi|302791750|ref|XP_002977641.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
gi|300154344|gb|EFJ20979.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
Length = 433
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 8/112 (7%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ +G NR +FLLE L DLDR L S G +L +V G+PI + KLCFE D
Sbjct: 48 PGSARVGINRIQFLLESLQDLDRNLSSRGSKLLLVHGNPI--------QWRIRKLCFEFD 99
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
E RD K+K+ + I + VSHT+++P+++I NG PLT++ +
Sbjct: 100 TEPYALDRDAKIKEHAKDKGIELHCSVSHTIFNPDLLIAKNGGKAPLTFQSF 151
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 117 TVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 176
+ G+ +G NR +FLLE L DLDR L S G +L +V G+PI + KLC
Sbjct: 44 SAPSPGSARVGINRIQFLLESLQDLDRNLSSRGSKLLLVHGNPI--------QWRIRKLC 95
Query: 177 FEQDCEAY 184
FE D E Y
Sbjct: 96 FEFDTEPY 103
>gi|432852920|ref|XP_004067451.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 521
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 61/115 (53%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G NR RFL+ L DLD L+ +LF+V+G P + KL + N TKL +E D E
Sbjct: 48 GINRLRFLISSLQDLDCSLRKLNSRLFVVRGKPEEVLPKLFTKWNVTKLTYEYDTEPYSR 107
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGT 123
RDK V E I V +SHTL+D + +I+ N PPLTY V +G+
Sbjct: 108 SRDKNVTMLAEEQRIQVIYKISHTLYDIDRIIEENNGKPPLTYNRLRDIVKALGS 162
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
G NR RFL+ L DLD L+ +LF+V+G P + KL + N TKL +E D E Y
Sbjct: 48 GINRLRFLISSLQDLDCSLRKLNSRLFVVRGKPEEVLPKLFTKWNVTKLTYEYDTEPY 105
>gi|149725124|ref|XP_001490350.1| PREDICTED: cryptochrome-2-like [Equus caballus]
Length = 579
Score = 86.3 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 61/108 (56%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +RD
Sbjct: 61 RRLFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERD 120
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
+ K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 121 AAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 168
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
R FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 61 RRLFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 115
>gi|444707572|gb|ELW48837.1| Cryptochrome-2 [Tupaia chinensis]
Length = 577
Score = 86.3 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 61/108 (56%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
+ FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +RD
Sbjct: 54 KLGFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERD 113
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
+ K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 114 AAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 161
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+ FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 54 KLGFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 108
>gi|47217864|emb|CAG02357.1| unnamed protein product [Tetraodon nigroviridis]
Length = 2050
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G NR RFL+ L DLD L++ +LF+V+G P +F KL + TKL +E D E
Sbjct: 46 VGINRCRFLIGALRDLDLSLRNLNSRLFVVRGKPEEVFPKLFSQWKVTKLTYEYDTEPYS 105
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
RD+ V E+ + V VSHTL+D E V++ N PPLTY V +G
Sbjct: 106 LSRDRTVTTLAEESGVQVVYRVSHTLYDTERVLEENNGKPPLTYNSMQAIVKKLG 160
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR RFL+ L DLD L++ +LF+V+G P +F KL + TKL +E D E Y
Sbjct: 46 VGINRCRFLIGALRDLDLSLRNLNSRLFVVRGKPEEVFPKLFSQWKVTKLTYEYDTEPY 104
>gi|326920457|ref|XP_003206489.1| PREDICTED: cryptochrome-2 [Meleagris gallopavo]
Length = 540
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 61/105 (58%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +RD +
Sbjct: 21 FLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 80
Query: 75 KKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
K E + V SHTL+D + +I+ NGN PPLTYK + +S
Sbjct: 81 IKLAKEAGVEVVVENSHTLYDLDRIIELNGNKPPLTYKRFQAIIS 125
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 133 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 21 FLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPF 72
>gi|225875100|emb|CAQ86665.1| cryptochrome [Euphausia superba]
Length = 545
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 67/120 (55%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLD L+ G+LF+V+G P + +L + T L FE+
Sbjct: 45 FAGSSNVGINKWRFLLQCLEDLDTTLRKLNGRLFVVRGQPAHVLPQLFKTWGTTCLTFEK 104
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + E I V SHTL+ E +I NG PLTYK + + +S +
Sbjct: 105 DPEPFGKVRDANITHIAREMGIQVIIKTSHTLYKLEKIISKNGGKLPLTYKTFQNVLSTM 164
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL DLD L+ G+LF+V+G P + +L + T L FE+D
Sbjct: 47 GSSNVGINKWRFLLQCLEDLDTTLRKLNGRLFVVRGQPAHVLPQLFKTWGTTCLTFEKDP 106
Query: 182 EAY 184
E +
Sbjct: 107 EPF 109
>gi|390470436|ref|XP_003734285.1| PREDICTED: cryptochrome-2 isoform 2 [Callithrix jacchus]
Length = 560
Score = 85.9 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 42/105 (40%), Positives = 60/105 (57%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +RD +
Sbjct: 40 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 99
Query: 75 KKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 100 MKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 144
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 133 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 40 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 91
>gi|261278636|pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion
Length = 543
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D E
Sbjct: 77 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 136
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
RD V+K + V+ SHT+++PE+VI N P+TY+ +L V
Sbjct: 137 YSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIV 189
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 100 IQTNGNVPPLTY---KMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ 156
I T N P Y +++ + M +G NR+RFL + L DLD QL+ +LF+V+
Sbjct: 50 IFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVR 109
Query: 157 GSPISIFQKLKRELNFTKLCFEQDCEAY 184
G P +F ++ + L FE D E Y
Sbjct: 110 GKPAEVFPRIFKSWRVEMLTFETDIEPY 137
>gi|261278633|pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion And
Cofactor F0
Length = 543
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D E
Sbjct: 77 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 136
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
RD V+K + V+ SHT+++PE+VI N P+TY+ +L V
Sbjct: 137 YSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIV 189
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 100 IQTNGNVPPLTY---KMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ 156
I T N P Y +++ + M +G NR+RFL + L DLD QL+ +LF+V+
Sbjct: 50 IFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVR 109
Query: 157 GSPISIFQKLKRELNFTKLCFEQDCEAY 184
G P +F ++ + L FE D E Y
Sbjct: 110 GKPAEVFPRIFKSWRVEMLTFETDIEPY 137
>gi|211939158|pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion
gi|211939161|pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
Ds Dna
gi|225697970|pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
Stranded Dna Containing A T(6-4)c Photolesion
gi|240104285|pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion And F0 Cofactor
gi|289526487|pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
gi|289526490|pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
Length = 543
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D E
Sbjct: 77 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 136
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
RD V+K + V+ SHT+++PE+VI N P+TY+ +L V
Sbjct: 137 YSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIV 189
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 100 IQTNGNVPPLTY---KMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ 156
I T N P Y +++ + M +G NR+RFL + L DLD QL+ +LF+V+
Sbjct: 50 IFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVR 109
Query: 157 GSPISIFQKLKRELNFTKLCFEQDCEAY 184
G P +F ++ + L FE D E Y
Sbjct: 110 GKPAEVFPRIFKSWRVEMLTFETDIEPY 137
>gi|17137248|ref|NP_477188.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
gi|24585455|ref|NP_724274.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
gi|442628599|ref|NP_001260632.1| (6-4)-photolyase, isoform C [Drosophila melanogaster]
gi|442628601|ref|NP_001260633.1| (6-4)-photolyase, isoform D [Drosophila melanogaster]
gi|7298691|gb|AAF53904.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
gi|22946921|gb|AAN11080.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
gi|201065459|gb|ACH92139.1| FI01404p [Drosophila melanogaster]
gi|440213996|gb|AGB93167.1| (6-4)-photolyase, isoform C [Drosophila melanogaster]
gi|440213997|gb|AGB93168.1| (6-4)-photolyase, isoform D [Drosophila melanogaster]
Length = 540
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D E
Sbjct: 54 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 113
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
RD V+K + V+ SHT+++PE+VI N P+TY+ +L V
Sbjct: 114 YSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIV 166
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 100 IQTNGNVPPLTY---KMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ 156
I T N P Y +++ + M +G NR+RFL + L DLD QL+ +LF+V+
Sbjct: 27 IFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVR 86
Query: 157 GSPISIFQKLKRELNFTKLCFEQDCEAY 184
G P +F ++ + L FE D E Y
Sbjct: 87 GKPAEVFPRIFKSWRVEMLTFETDIEPY 114
>gi|19528415|gb|AAL90322.1| RE11660p [Drosophila melanogaster]
Length = 540
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D E
Sbjct: 54 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 113
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
RD V+K + V+ SHT+++PE+VI N P+TY+ +L V
Sbjct: 114 YSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIV 166
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 100 IQTNGNVPPLTY---KMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ 156
I T N P Y +++ + M +G NR+RFL + L DLD QL+ +LF+V+
Sbjct: 27 IFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVR 86
Query: 157 GSPISIFQKLKRELNFTKLCFEQDCEAY 184
G P +F ++ + L FE D E Y
Sbjct: 87 GKPAEVFPRIFKSWRVEMLTFETDIEPY 114
>gi|195351886|ref|XP_002042448.1| GM23319 [Drosophila sechellia]
gi|194124317|gb|EDW46360.1| GM23319 [Drosophila sechellia]
Length = 540
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D E
Sbjct: 54 MQVGANRWRFLQQTLEDLDNQLRKLDSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 113
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
RD V+K + V+ SHT+++PE+VI N P+TY+ +L V
Sbjct: 114 YSLTRDAAVQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIV 166
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 100 IQTNGNVPPLTY---KMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ 156
I T N P Y +++ + M +G NR+RFL + L DLD QL+ +LF+V+
Sbjct: 27 IFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLDSRLFVVR 86
Query: 157 GSPISIFQKLKRELNFTKLCFEQDCEAY 184
G P +F ++ + L FE D E Y
Sbjct: 87 GKPAEVFPRIFKSWRVEMLTFETDIEPY 114
>gi|195580452|ref|XP_002080051.1| GD21692 [Drosophila simulans]
gi|194192060|gb|EDX05636.1| GD21692 [Drosophila simulans]
Length = 540
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D E
Sbjct: 54 MQVGANRWRFLQQTLEDLDNQLRKLDSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 113
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
RD V+K + V+ SHT+++PE+VI N P+TY+ +L V
Sbjct: 114 YSLTRDAAVQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIV 166
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 100 IQTNGNVPPLTY---KMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ 156
I T N P Y +++ + M +G NR+RFL + L DLD QL+ +LF+V+
Sbjct: 27 IFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLDSRLFVVR 86
Query: 157 GSPISIFQKLKRELNFTKLCFEQDCEAY 184
G P +F ++ + L FE D E Y
Sbjct: 87 GKPAEVFPRIFKSWRVEMLTFETDIEPY 114
>gi|193702257|ref|XP_001946012.1| PREDICTED: cryptochrome-1-like [Acyrthosiphon pisum]
Length = 535
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+ G NR+RFL + L DLD L+ G +L++++G P +F L + N L FE D E
Sbjct: 59 IRAGANRWRFLQQSLVDLDTTLRKLGTRLYVIRGLPHEVFPDLFAKWNVKLLTFELDTEP 118
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMH 125
+RD +V++ ++ + V++ VSHT+++ E+V++ NG P+TY+ ++ V + T
Sbjct: 119 YARERDNQVEQLARKHGVKVEQKVSHTIYNTELVLRANGGSVPMTYQKFVSVVGSMPTPR 178
Query: 126 IGYNRFRFLL-ECLADLD 142
L ECL D D
Sbjct: 179 RPIPAPDMLPSECLLDDD 196
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
+ G NR+RFL + L DLD L+ G +L++++G P +F L + N L FE D E
Sbjct: 59 IRAGANRWRFLQQSLVDLDTTLRKLGTRLYVIRGLPHEVFPDLFAKWNVKLLTFELDTEP 118
Query: 184 Y 184
Y
Sbjct: 119 Y 119
>gi|260800305|ref|XP_002595074.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae]
gi|229280316|gb|EEN51085.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae]
Length = 507
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 70/114 (61%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G N +RF+++CL +LD +L+ +G +LF+V+GS F++ R+ T+L + D E +
Sbjct: 54 GANWWRFVIQCLEELDTRLRKYGLRLFVVRGSAEDFFKEHFRKWKVTQLTHDVDTEPFYR 113
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
RD V+K ++ + V V+HTL+D + ++ NG PPLTY+ +L + +G
Sbjct: 114 IRDVAVRKIASDMGVEVVTHVAHTLYDIDRTVERNGGTPPLTYRKFLKVYNEMG 167
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
G N +RF+++CL +LD +L+ +G +LF+V+GS F++ R+ T+L + D E +
Sbjct: 54 GANWWRFVIQCLEELDTRLRKYGLRLFVVRGSAEDFFKEHFRKWKVTQLTHDVDTEPF 111
>gi|188536103|ref|NP_001120929.1| cryptochrome-2 isoform 2 [Homo sapiens]
Length = 532
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG H FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D
Sbjct: 5 PGRTHTW-----FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYD 59
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 60 SEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 116
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 133 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 12 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 63
>gi|426368089|ref|XP_004051045.1| PREDICTED: cryptochrome-2 isoform 2 [Gorilla gorilla gorilla]
Length = 532
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG H FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D
Sbjct: 5 PGRTHTW-----FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYD 59
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 60 SEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 116
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 133 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 12 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 63
>gi|332836252|ref|XP_003313049.1| PREDICTED: cryptochrome-2 isoform 2 [Pan troglodytes]
gi|397473569|ref|XP_003808280.1| PREDICTED: cryptochrome-2 isoform 2 [Pan paniscus]
Length = 532
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG H FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D
Sbjct: 5 PGRTHTW-----FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYD 59
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 60 SEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 116
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 133 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 12 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 63
>gi|432090377|gb|ELK23803.1| Cryptochrome-2 [Myotis davidii]
Length = 539
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +RD +
Sbjct: 19 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 78
Query: 75 KKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 79 MKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 123
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 133 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 19 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 70
>gi|355681095|gb|AER96735.1| cryptochrome 2 [Mustela putorius furo]
Length = 521
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +RD +
Sbjct: 1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 60
Query: 75 KKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 61 MKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIIS 105
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 133 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 52
>gi|405961052|gb|EKC26912.1| Cryptochrome-1 [Crassostrea gigas]
Length = 517
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 58/119 (48%), Gaps = 28/119 (23%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT GYNRFRFLLECL DLD+ LK+ G +L+ QG P I ++L E TK+ FE D
Sbjct: 47 GTKTAGYNRFRFLLECLQDLDKNLKAAGTRLYCFQGQPTDILERLIEEWGVTKVTFEADP 106
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +W +RD+ NG PPLT+ ++ S IG
Sbjct: 107 EPIWQERDR----------------------------LNNGGSPPLTFSLFNLVTSTIG 137
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
Y +++ GT GYNRFRFLLECL DLD+ LK+ G +L+ QG P I ++L E
Sbjct: 36 YPVFIFDGEVAGTKTAGYNRFRFLLECLQDLDKNLKAAGTRLYCFQGQPTDILERLIEEW 95
Query: 171 NFTKLCFEQDCEA 183
TK+ FE D E
Sbjct: 96 GVTKVTFEADPEP 108
>gi|348500170|ref|XP_003437646.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 522
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 63/115 (54%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G NR+RFL+ L DLD L+ +LF+V+G P + KL + T+L +E D E
Sbjct: 47 VGINRWRFLIGALKDLDGSLRKLNSRLFVVRGKPEDVLPKLFTKWKVTRLAYEYDTEPYS 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
+RD KV E+ + V VSHTL++ + +I+ N PPLTY V IG
Sbjct: 107 LQRDSKVTSLAKEHGVEVIYKVSHTLYNIDRIIEENNGKPPLTYTKLQAIVKTIG 161
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 114 YLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173
YL +C+G NR+RFL+ L DLD L+ +LF+V+G P + KL + T
Sbjct: 40 YLQNKACVGI-----NRWRFLIGALKDLDGSLRKLNSRLFVVRGKPEDVLPKLFTKWKVT 94
Query: 174 KLCFEQDCEAY 184
+L +E D E Y
Sbjct: 95 RLAYEYDTEPY 105
>gi|301609141|ref|XP_002934138.1| PREDICTED: cryptochrome-2 [Xenopus (Silurana) tropicalis]
Length = 531
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 62/108 (57%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R RFLL+ L DLD L+ +LF+V+G P +F +L +E F+ FE D E +RD
Sbjct: 29 RGRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKECKFSTPTFEYDSEPFGKERD 88
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
+ K E + V SHTL+D + +I+ NG+ PPLTYK + +S
Sbjct: 89 AVIMKLAKEAGVEVIVENSHTLYDLDRIIELNGHSPPLTYKRFQAIIS 136
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
R RFLL+ L DLD L+ +LF+V+G P +F +L +E F+ FE D E +
Sbjct: 29 RGRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKECKFSTPTFEYDSEPF 83
>gi|223647614|gb|ACN10565.1| Cryptochrome-1 [Salmo salar]
Length = 523
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 69/120 (57%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P ++IG NR++FL+ L DLD L+ +LF+V+G +F KL ++ T+L +E D
Sbjct: 42 PNNVNIGINRWKFLIGALKDLDCSLRKLNSRLFVVRGKTDEVFPKLFQKWKVTRLTYEYD 101
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +RDK+V + E+ + + VSHTL++ + +I+ N PLTY VS IG
Sbjct: 102 TEPFSLRRDKEVGRLAEEHGVEIIYKVSHTLYNIDRIIEENNGKAPLTYNRLQTLVSSIG 161
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
Y +++ ++IG NR++FL+ L DLD L+ +LF+V+G +F KL ++
Sbjct: 32 YPVFVLDPYSPNNVNIGINRWKFLIGALKDLDCSLRKLNSRLFVVRGKTDEVFPKLFQKW 91
Query: 171 NFTKLCFEQDCEAY 184
T+L +E D E +
Sbjct: 92 KVTRLTYEYDTEPF 105
>gi|156383451|ref|XP_001632847.1| predicted protein [Nematostella vectensis]
gi|156219909|gb|EDO40784.1| predicted protein [Nematostella vectensis]
Length = 159
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 59/109 (54%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
NR++FLL+CL DL+ L+ G +L I+ GSP+ IF KL L TKL FE D E +R
Sbjct: 51 NRWKFLLQCLQDLNNSLEELGSKLIILTGSPVEIFPKLLHSLKVTKLTFEVDTEPFAQQR 110
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D + I VK SHTL+D E ++ PL + +L +S
Sbjct: 111 DSVISHIARSAGIEVKTHASHTLYDIESLVSHCNENIPLVFDEFLEMIS 159
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
NR++FLL+CL DL+ L+ G +L I+ GSP+ IF KL L TKL FE D E +
Sbjct: 51 NRWKFLLQCLQDLNNSLEELGSKLIILTGSPVEIFPKLLHSLKVTKLTFEVDTEPF 106
>gi|1304062|dbj|BAA12067.1| photolyase [Drosophila melanogaster]
Length = 540
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 62/113 (54%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D E
Sbjct: 54 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 113
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
RD V+K + V+ SHT+++PE+V N P+TY+ +L V
Sbjct: 114 YSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVKAKNLGKAPITYQKFLGIV 166
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 100 IQTNGNVPPLTY---KMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ 156
I T N P Y +++ + M +G NR+RFL + L DLD QL+ +LF+V+
Sbjct: 27 IFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVR 86
Query: 157 GSPISIFQKLKRELNFTKLCFEQDCEAY 184
G P +F ++ + L FE D E Y
Sbjct: 87 GKPAEVFPRIFKSWRVEMLTFETDIEPY 114
>gi|47218319|emb|CAG04151.1| unnamed protein product [Tetraodon nigroviridis]
Length = 625
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 28/153 (18%)
Query: 2 FPGTMHIGYNRFR-----------------FLLECLADLDRQLKSHGGQLFIVQGSPISI 44
F G+ ++G NR+R FLL+ L DLD L+ +LF+++G P +
Sbjct: 41 FAGSSNVGINRWRICLRSPLTVSQEQEALRFLLQSLEDLDSSLRKLNSRLFVIRGQPTDV 100
Query: 45 FQKL-----------KRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTL 93
F +L +E N ++L +E D E +RD +KK +E + V +SHTL
Sbjct: 101 FPRLFKAHPTVAVYVPQEWNISRLSYEYDSEPFGKERDAAIKKLASEAGVEVTVCISHTL 160
Query: 94 WDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHI 126
+D + +I+ NG PLTYK + +S + + +
Sbjct: 161 YDLDKIIELNGGQSPLTYKRFQTLISRMDPVEV 193
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 131 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL-----------KRELNFTKLCFEQ 179
RFLL+ L DLD L+ +LF+++G P +F +L +E N ++L +E
Sbjct: 69 LRFLLQSLEDLDSSLRKLNSRLFVIRGQPTDVFPRLFKAHPTVAVYVPQEWNISRLSYEY 128
Query: 180 DCEAY 184
D E +
Sbjct: 129 DSEPF 133
>gi|260829106|ref|XP_002609503.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
gi|229294860|gb|EEN65513.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
Length = 522
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 69/115 (60%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G N++RF++ECL DLD +L+++G +LF+ +G+ + F + R+ N T+L + + E
Sbjct: 54 GANQWRFVIECLQDLDTRLRAYGLRLFVARGNAEAFFAEHFRKWNITQLTHDVETEHYHR 113
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGT 123
RD V+K + + V +V+HTL++ + +I+ NG PLTY+ + + G
Sbjct: 114 FRDAAVRKIAVDEGVEVVNYVAHTLYNIDKIIEYNGGSAPLTYRQFQKVLKDFGA 168
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 40/58 (68%)
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
G N++RF++ECL DLD +L+++G +LF+ +G+ + F + R+ N T+L + + E Y
Sbjct: 54 GANQWRFVIECLQDLDTRLRAYGLRLFVARGNAEAFFAEHFRKWNITQLTHDVETEHY 111
>gi|449271617|gb|EMC81901.1| Cryptochrome-1 [Columba livia]
Length = 525
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 68/123 (55%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
MHIG R+ FLL+ L DL + L G +L ++QG S+ + ++ N T++ + +
Sbjct: 44 SAMHIGALRWHFLLQSLEDLHKNLSRLGARLLVIQGEYESVLRDHVQKWNITQVTLDAEM 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGT 123
E + + + +++ AE V V H+L+D + ++ NG PPLTYK +LH +S +G
Sbjct: 104 EPFYKEMEANIRRLGAELGFEVLSRVGHSLYDTKRILDLNGGSPPLTYKRFLHILSQLGD 163
Query: 124 MHI 126
+
Sbjct: 164 PEV 166
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
MHIG R+ FLL+ L DL + L G +L ++QG S+ + ++ N T++ + +
Sbjct: 44 SAMHIGALRWHFLLQSLEDLHKNLSRLGARLLVIQGEYESVLRDHVQKWNITQVTLDAEM 103
Query: 182 EAY 184
E +
Sbjct: 104 EPF 106
>gi|156378195|ref|XP_001631029.1| predicted protein [Nematostella vectensis]
gi|156218062|gb|EDO38966.1| predicted protein [Nematostella vectensis]
Length = 498
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ N +RFL+E L DLD+ L+ + +LFI+QG PI +F KL ++ N +KL FE D E
Sbjct: 46 VSPNGWRFLIESLRDLDQSLQKYNSRLFIIQGQPIDVFPKLIKQWNISKLTFEYDSEPFP 105
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEV---VIQTNGNVPPLTYKMYLHTVSCIG 122
+RD VK+ + + V SHTL+D E +++ N PP+ +K + V +G
Sbjct: 106 RQRDLAVKRIAEKAGVDVIVCSSHTLYDIECIEQILEMNEGKPPVLFKDFEAIVRKLG 163
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
+ + + N +RFL+E L DLD+ L+ + +LFI+QG PI +F KL ++ N +KL FE
Sbjct: 39 AAVKNAKVSPNGWRFLIESLRDLDQSLQKYNSRLFIIQGQPIDVFPKLIKQWNISKLTFE 98
Query: 179 QDCEAY 184
D E +
Sbjct: 99 YDSEPF 104
>gi|410912170|ref|XP_003969563.1| PREDICTED: uncharacterized protein LOC101062553 [Takifugu rubripes]
Length = 1321
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 63/115 (54%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G NR RFL+ L DLD L+ +LF+V+G P +F KL + TKL +E D E L
Sbjct: 46 VGVNRCRFLIGALKDLDLSLRQLNTRLFVVRGKPEEVFPKLFCQWKITKLTYEYDTEPLS 105
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
RDK V + E+ I V VSHTL+D +I+ N PLTYK V +G
Sbjct: 106 LSRDKTVTRLAEEHGIDVVCKVSHTLFDINRIIEENNGKTPLTYKSMQAIVKKLG 160
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
+G NR RFL+ L DLD L+ +LF+V+G P +F KL + TKL +E D E
Sbjct: 46 VGVNRCRFLIGALKDLDLSLRQLNTRLFVVRGKPEEVFPKLFCQWKITKLTYEYDTE 102
>gi|422295899|gb|EKU23198.1| cryptochrome [Nannochloropsis gaditana CCMP526]
Length = 560
Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
IG R+RF+L+ + +LD L+ G +LF+V+G P +L RE +KL FE D E
Sbjct: 61 IGVLRYRFMLQTIKNLDDNLREIGSRLFVVKGQPAEALPRLFREWGVSKLTFESDTEPYA 120
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEV-VIQTNGNVPPLTYKMYLHTVSCIG 122
RD+ V + A++ + V+ F SHTL DPE V + G P Y+ ++ + +G
Sbjct: 121 KVRDRHVCELAAKHQVHVQTFPSHTLHDPEAYVARLQGKDVPTVYQSFVKLFASMG 176
Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
IG R+RF+L+ + +LD L+ G +LF+V+G P +L RE +KL FE D E Y
Sbjct: 61 IGVLRYRFMLQTIKNLDDNLREIGSRLFVVKGQPAEALPRLFREWGVSKLTFESDTEPY 119
>gi|307103112|gb|EFN51376.1| hypothetical protein CHLNCDRAFT_7260, partial [Chlorella
variabilis]
Length = 491
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 10/124 (8%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQG---------SPISIFQKLKRELNFTKLC 58
IG NR +FLLE L DLD ++ G +L +++G + S+ L+ E T+LC
Sbjct: 43 IGVNRIQFLLESLTDLDASFRARGSRLLVLRGRSEEAPSCQAAASLPGALQ-EWGVTRLC 101
Query: 59 FEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
FE D E +RD V++ + V VSHTL+DP+V++Q NG PLT + + V
Sbjct: 102 FEHDTEPYAKRRDVAVRQLAEAAGVEVVAPVSHTLYDPQVLLQRNGGRAPLTMQSFTKLV 161
Query: 119 SCIG 122
G
Sbjct: 162 DGGG 165
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQG---------SPISIFQKLKRELNFTKLC 176
IG NR +FLLE L DLD ++ G +L +++G + S+ L+ E T+LC
Sbjct: 43 IGVNRIQFLLESLTDLDASFRARGSRLLVLRGRSEEAPSCQAAASLPGALQ-EWGVTRLC 101
Query: 177 FEQDCEAY 184
FE D E Y
Sbjct: 102 FEHDTEPY 109
>gi|443692783|gb|ELT94302.1| hypothetical protein CAPTEDRAFT_40617, partial [Capitella teleta]
Length = 140
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 60/102 (58%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDK 72
+RFLL+ L DLD +L+ +LF+++G P IF KL ++ + + L FE+D E +RD
Sbjct: 1 YRFLLQSLEDLDSRLRKLNSRLFVIRGQPTDIFPKLFQKWDISALAFEEDPEPFGKERDS 60
Query: 73 KVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
V + I V SHTL++ + ++ N VPPLTYK +
Sbjct: 61 AVCTKSQDAGIEVIIKTSHTLFNLQKILDKNSGVPPLTYKRF 102
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 131 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+RFLL+ L DLD +L+ +LF+++G P IF KL ++ + + L FE+D E +
Sbjct: 1 YRFLLQSLEDLDSRLRKLNSRLFVIRGQPTDIFPKLFQKWDISALAFEEDPEPF 54
>gi|37521318|ref|NP_924695.1| photolyase [Gloeobacter violaceus PCC 7421]
gi|35212315|dbj|BAC89690.1| photolyase [Gloeobacter violaceus PCC 7421]
Length = 490
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
+G NR RFLLE L ++D L+ G +L ++QG P + +++ +LCFE+D E
Sbjct: 45 RVGVNRMRFLLESLGEIDGNLRRLGSRLIVLQGRPQEVLERVLSRWQIGRLCFERDTEPY 104
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
+RD+ ++ + V +HTL+DP+ +I+ P TY + + +G
Sbjct: 105 ARRRDEAIRSMAERVGVRVISPTAHTLYDPDELIELGRGKVPTTYGAFGRLAAKLG 160
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
Y +++ + +G NR RFLLE L ++D L+ G +L ++QG P + +++
Sbjct: 31 YPLFIVDPWFVNPERVGVNRMRFLLESLGEIDGNLRRLGSRLIVLQGRPQEVLERVLSRW 90
Query: 171 NFTKLCFEQDCEAY 184
+LCFE+D E Y
Sbjct: 91 QIGRLCFERDTEPY 104
>gi|224085023|ref|XP_002198533.1| PREDICTED: cryptochrome-1-like [Taeniopygia guttata]
Length = 527
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 67/119 (56%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+MHIG R+ FLL+ L DL + L G L ++QG + + ++ N T++ + +
Sbjct: 44 SSMHIGALRWNFLLQSLEDLHKNLGQLGSCLLVIQGEYEIVLRDHIQKWNITQVTLDAEM 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E + + + +++ AE V VSH+L++ + ++ NG PPLTYK +LH +S +G
Sbjct: 104 EPFYKEMEANIQRLGAELGFEVLSLVSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLG 162
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 111 YKMY-LHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE 169
Y +Y L +MHIG R+ FLL+ L DL + L G L ++QG + + ++
Sbjct: 32 YPVYILDRAFLTSSMHIGALRWNFLLQSLEDLHKNLGQLGSCLLVIQGEYEIVLRDHIQK 91
Query: 170 LNFTKLCFEQDCEAY 184
N T++ + + E +
Sbjct: 92 WNITQVTLDAEMEPF 106
>gi|357139910|ref|XP_003571518.1| PREDICTED: (6-4)DNA photolyase-like [Brachypodium distachyon]
Length = 547
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 64/116 (55%), Gaps = 4/116 (3%)
Query: 3 PGTMHIGYNRFRFLLECLADLD---RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59
PG+ G R RFLLE L+DLD R+L S L P ++ L R+ N KLCF
Sbjct: 62 PGSARAGVARVRFLLESLSDLDAGLRRLGSRLLLLRARDDVPDALCAAL-RDWNIGKLCF 120
Query: 60 EQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
E D E RDK+V + A I V VSHTL+DP +I+ NG PPLTY+ +L
Sbjct: 121 EADTEPYALARDKRVTDFAAALGIEVFTPVSHTLFDPAEIIEKNGGRPPLTYQSFL 176
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 122 GTMHIGYNRFRFLLECLADLD---RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
G+ G R RFLLE L+DLD R+L S L P ++ L R+ N KLCFE
Sbjct: 63 GSARAGVARVRFLLESLSDLDAGLRRLGSRLLLLRARDDVPDALCAAL-RDWNIGKLCFE 121
Query: 179 QDCEAY 184
D E Y
Sbjct: 122 ADTEPY 127
>gi|222622395|gb|EEE56527.1| hypothetical protein OsJ_05816 [Oryza sativa Japonica Group]
Length = 551
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QGSPISIFQKLKRELNFTKLC 58
PG+ G R RFLLE L+DLD +L+ G +L ++ G ++ N KLC
Sbjct: 63 PGSARAGVARVRFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLC 122
Query: 59 FEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
FE D E RDKKV + A + I V VSHTL+DP +I+ NG PP+TY+ ++
Sbjct: 123 FESDTEPYALARDKKVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFV 179
Score = 36.2 bits (82), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 116 HTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QGSPISIFQKLKRELN 171
G+ G R RFLLE L+DLD +L+ G +L ++ G ++ N
Sbjct: 58 QAAPSPGSARAGVARVRFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWN 117
Query: 172 FTKLCFEQDCEAY 184
KLCFE D E Y
Sbjct: 118 IGKLCFESDTEPY 130
>gi|218190281|gb|EEC72708.1| hypothetical protein OsI_06300 [Oryza sativa Indica Group]
Length = 551
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QGSPISIFQKLKRELNFTKLC 58
PG+ G R RFLLE L+DLD +L+ G +L ++ G ++ N KLC
Sbjct: 63 PGSARAGVARVRFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLC 122
Query: 59 FEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
FE D E RDKKV + A + I V VSHTL+DP +I+ NG PP+TY+ ++
Sbjct: 123 FESDTEPYALARDKKVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFV 179
Score = 36.2 bits (82), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 116 HTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QGSPISIFQKLKRELN 171
G+ G R RFLLE L+DLD +L+ G +L ++ G ++ N
Sbjct: 58 QAAPSPGSARAGVARVRFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWN 117
Query: 172 FTKLCFEQDCEAY 184
KLCFE D E Y
Sbjct: 118 IGKLCFESDTEPY 130
>gi|297598791|ref|NP_001046243.2| Os02g0204400 [Oryza sativa Japonica Group]
gi|306756329|sp|Q0E2Y1.1|UVR3_ORYSJ RecName: Full=(6-4)DNA photolyase
gi|255670698|dbj|BAF08157.2| Os02g0204400 [Oryza sativa Japonica Group]
Length = 551
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QGSPISIFQKLKRELNFTKLC 58
PG+ G R RFLLE L+DLD +L+ G +L ++ G ++ N KLC
Sbjct: 63 PGSARAGVARVRFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLC 122
Query: 59 FEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
FE D E RDKKV + A + I V VSHTL+DP +I+ NG PP+TY+ ++
Sbjct: 123 FESDTEPYALARDKKVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFV 179
Score = 36.2 bits (82), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 116 HTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QGSPISIFQKLKRELN 171
G+ G R RFLLE L+DLD +L+ G +L ++ G ++ N
Sbjct: 58 QAAPSPGSARAGVARVRFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWN 117
Query: 172 FTKLCFEQDCEAY 184
KLCFE D E Y
Sbjct: 118 IGKLCFESDTEPY 130
>gi|413936068|gb|AFW70619.1| hypothetical protein ZEAMMB73_082662 [Zea mays]
Length = 397
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 4/116 (3%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV---QGSPISIFQKLKRELNFTKLCF 59
PG+ G R RFLLE L+DLD +L+ G +L ++ ++ LK + N KLCF
Sbjct: 61 PGSARAGVARIRFLLESLSDLDARLRRLGSRLLLLRARDDVADAVCAALK-DWNIGKLCF 119
Query: 60 EQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
E D E RDKKV + + I V VSHTL+DPE +I+ NG PPLTY+ ++
Sbjct: 120 ESDTEPYALARDKKVTDFALASGIEVLTPVSHTLFDPEEIIKKNGGRPPLTYQSFV 175
>gi|145881071|gb|ABP97099.1| cryptochrome CRY2 [Acropora millepora]
Length = 520
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ NR+ FLLE L DLD L G +LF+++G+P+ + L ++ N ++ FE D E
Sbjct: 62 VSLNRWGFLLESLRDLDTSLVECGSRLFVIRGNPVEMLPNLFKKWNINQMSFEVDSEPYS 121
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
+ RD + EN I V VSHTL+DP ++ + + PL + + +V
Sbjct: 122 NSRDLVISHLAKENGIEVISRVSHTLYDPRILRGLSSGIVPLLFDEFKESV 172
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
Y +Y S + NR+ FLLE L DLD L G +LF+++G+P+ + L ++
Sbjct: 47 YGVYFLPPSEAKQGSVSLNRWGFLLESLRDLDTSLVECGSRLFVIRGNPVEMLPNLFKKW 106
Query: 171 NFTKLCFEQDCEAY 184
N ++ FE D E Y
Sbjct: 107 NINQMSFEVDSEPY 120
>gi|45643655|gb|AAS72903.1| cryptochrome 4 [Passer domesticus]
Length = 359
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 66/119 (55%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+MHIG R+ FLL+ L DL + L G L ++QG + + ++ N T++ + +
Sbjct: 34 SSMHIGALRWNFLLQSLEDLHKNLGQLGSCLLVIQGEYEIVLRDHIQKWNITQVTLDAEM 93
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E + + + +++ E V VSH+L++ + ++ NG PPLTYK +LH +S +G
Sbjct: 94 EPFYKEMEANIQRLGVELGFEVFSLVSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLG 152
Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 111 YKMY-LHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE 169
Y +Y L +MHIG R+ FLL+ L DL + L G L ++QG + + ++
Sbjct: 22 YPVYILDRAFLTSSMHIGALRWNFLLQSLEDLHKNLGQLGSCLLVIQGEYEIVLRDHIQK 81
Query: 170 LNFTKLCFEQDCEAY 184
N T++ + + E +
Sbjct: 82 WNITQVTLDAEMEPF 96
>gi|226494726|ref|NP_001146620.1| uncharacterized protein LOC100280217 [Zea mays]
gi|219888051|gb|ACL54400.1| unknown [Zea mays]
Length = 421
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 68/116 (58%), Gaps = 4/116 (3%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGS---PISIFQKLKRELNFTKLCF 59
PG+ G R RFLLE L+DLD +L+ G +L +++ ++ LK + N KLCF
Sbjct: 61 PGSARAGVARIRFLLESLSDLDARLRRLGSRLLLLRARDDVADAVCAALK-DWNIGKLCF 119
Query: 60 EQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
E D E RDKKV + + I V VSHTL+DPE +I+ NG PPLTY+ ++
Sbjct: 120 ESDTEPYALARDKKVTDFALASGIEVLTPVSHTLFDPEEIIKKNGGRPPLTYQSFV 175
>gi|413936069|gb|AFW70620.1| hypothetical protein ZEAMMB73_082662 [Zea mays]
Length = 548
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 64/116 (55%), Gaps = 4/116 (3%)
Query: 3 PGTMHIGYNRFRFLLECLADLD---RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59
PG+ G R RFLLE L+DLD R+L S L ++ LK + N KLCF
Sbjct: 61 PGSARAGVARIRFLLESLSDLDARLRRLGSRLLLLRARDDVADAVCAALK-DWNIGKLCF 119
Query: 60 EQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
E D E RDKKV + + I V VSHTL+DPE +I+ NG PPLTY+ ++
Sbjct: 120 ESDTEPYALARDKKVTDFALASGIEVLTPVSHTLFDPEEIIKKNGGRPPLTYQSFV 175
>gi|302828718|ref|XP_002945926.1| DNA photolyase [Volvox carteri f. nagariensis]
gi|300268741|gb|EFJ52921.1| DNA photolyase [Volvox carteri f. nagariensis]
Length = 621
Score = 76.3 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 51/87 (58%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G NR+ FLLE L DLD +S G +L +++G P +F ++ RE T+LCFE D E
Sbjct: 51 VGVNRYNFLLESLRDLDASFRSRGSRLLVLRGKPEEVFPRVFREWRITQLCFEVDTEPYA 110
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLW 94
RD +++ E + V VSHTL+
Sbjct: 111 RVRDARIQGLADEAGVAVWTAVSHTLY 137
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+ FLLE L DLD +S G +L +++G P +F ++ RE T+LCFE D E Y
Sbjct: 51 VGVNRYNFLLESLRDLDASFRSRGSRLLVLRGKPEEVFPRVFREWRITQLCFEVDTEPY 109
>gi|326437928|gb|EGD83498.1| DNA photolyase [Salpingoeca sp. ATCC 50818]
Length = 540
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G R+ FLLE L DLD+ L++ G +L++++G P+ ++ +E T+L FE+D E
Sbjct: 49 VGVVRYNFLLESLRDLDKSLRTLGSRLYVLKGKPLQALEEKFKEWEVTRLTFERDTEPYA 108
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVP--PLTYKMY 114
RD + ++ ++ I V V HTL DPE I G PLTY +
Sbjct: 109 KLRDTQARELAEKHGIEVITTVGHTLHDPEQYIAKAGGADKIPLTYSSF 157
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G R+ FLLE L DLD+ L++ G +L++++G P+ ++ +E T+L FE+D E Y
Sbjct: 49 VGVVRYNFLLESLRDLDKSLRTLGSRLYVLKGKPLQALEEKFKEWEVTRLTFERDTEPY 107
>gi|395538375|ref|XP_003771158.1| PREDICTED: cryptochrome-1 [Sarcophilus harrisii]
Length = 671
Score = 75.9 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 14 RFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKK 73
RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E D E +RD
Sbjct: 159 RFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAA 218
Query: 74 VKKWCAENNITVKEFVSHTLWD---PEVVIQ 101
+KK +E + V +SHTL+D PE +Q
Sbjct: 219 IKKLASEAGVEVIVRISHTLYDLDKPEAGLQ 249
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 132 RFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E D E +
Sbjct: 159 RFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPF 211
>gi|156383455|ref|XP_001632849.1| predicted protein [Nematostella vectensis]
gi|156219911|gb|EDO40786.1| predicted protein [Nematostella vectensis]
Length = 513
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 61/116 (52%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
++ NR+ FLLE L DLD L+S G +L +V+G P+ KL + N +L E D E
Sbjct: 59 NLSPNRWWFLLESLRDLDYNLRSLGSRLLVVRGQPVQEMPKLLDQWNIKRLTLEYDSEPP 118
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
+RD V + V + VSHTL+D E V++TN P+T+ T +G
Sbjct: 119 AKQRDAVVTHLAKNLGVEVIQRVSHTLYDVETVLETNDGKLPMTFDEMAKTAEQLG 174
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
Y +Y + + ++ NR+ FLLE L DLD L+S G +L +V+G P+ KL +
Sbjct: 45 YGVYFLDPASVQRSNLSPNRWWFLLESLRDLDYNLRSLGSRLLVVRGQPVQEMPKLLDQW 104
Query: 171 NFTKLCFEQDCE 182
N +L E D E
Sbjct: 105 NIKRLTLEYDSE 116
>gi|325180456|emb|CCA14862.1| cryptochrome putative [Albugo laibachii Nc14]
Length = 639
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 63/117 (53%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P + G NRF+FLLE + L + + G +L I +G I +F+++ T + F+Q
Sbjct: 103 PKRLLCGVNRFQFLLESVGTLAEAIAARGSRLIIARGEGIDVFRRILPAWKITHIFFDQA 162
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
E RD +V++ A N+ V+ +TL+D + VI+ NG P TY +L TV+
Sbjct: 163 IEPFAIARDHQVRELAASLNVHVETTHGYTLYDQDKVIEKNGGKAPATYTAFLRTVA 219
Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
G NRF+FLLE + L + + G +L I +G I +F+++ T + F+Q E +
Sbjct: 109 GVNRFQFLLESVGTLAEAIAARGSRLIIARGEGIDVFRRILPAWKITHIFFDQAIEPF 166
>gi|410994568|gb|AFV96168.1| cryptochrome 2 [Talitrus saltator]
Length = 565
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 71/120 (59%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL D+D L++ +LF+V+G P + +L +E N T L FE+
Sbjct: 89 FAGSSNVGVNKWRFLLQCLEDVDNSLRNLNSRLFVVRGQPANALPQLFKEWNTTVLSFEE 148
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD + E I V SHTL++ + +I+ G PPLTYK + + ++ +
Sbjct: 149 DPEPFGRARDASIIGIAQEMGIEVIVRTSHTLYELDKIIKKKGGKPPLTYKTFQNILAMM 208
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 43/63 (68%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G N++RFLL+CL D+D L++ +LF+V+G P + +L +E N T L FE+D
Sbjct: 91 GSSNVGVNKWRFLLQCLEDVDNSLRNLNSRLFVVRGQPANALPQLFKEWNTTVLSFEEDP 150
Query: 182 EAY 184
E +
Sbjct: 151 EPF 153
>gi|47212596|emb|CAF93038.1| unnamed protein product [Tetraodon nigroviridis]
Length = 662
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 36/154 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL------------- 48
F G ++G NR+RFLLE L DLD LK +LF+V+G P +F +L
Sbjct: 41 FAGAANVGINRWRFLLEALEDLDCSLKKLNSRLFVVRGQPTDVFPRLLKVGAGPVRSLVF 100
Query: 49 -----------------------KRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85
+E T+L FE D E +RD + K + +
Sbjct: 101 QSADRAGAMIRASCRCLILSVCVPQEWKVTRLTFEYDPEPYGKERDGAIIKMAQQFGVET 160
Query: 86 KEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
SHTL++ + +++ N N PPLT+K + VS
Sbjct: 161 IVRNSHTLYNLDRIVEMNNNSPPLTFKRFQTIVS 194
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 166
G ++G NR+RFLLE L DLD LK +LF+V+G P +F +L
Sbjct: 43 GAANVGINRWRFLLEALEDLDCSLKKLNSRLFVVRGQPTDVFPRL 87
>gi|47212597|emb|CAF93039.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 36/154 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL------------- 48
F G ++G NR+RFLLE L DLD LK +LF+V+G P +F +L
Sbjct: 41 FAGAANVGINRWRFLLEALEDLDCSLKKLNSRLFVVRGQPTDVFPRLLKVGAGPVRSLVF 100
Query: 49 -----------------------KRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85
+E T+L FE D A +RD + K + +
Sbjct: 101 QSADRAGAMIRASCRCLILSVCVPQEWKVTRLTFEYDPRAYGKERDGAIIKMAQQFGVET 160
Query: 86 KEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
SHTL++ + +++ N N PPLT+K + VS
Sbjct: 161 IVRNSHTLYNLDRIVEMNNNSPPLTFKRFQTIVS 194
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 166
G ++G NR+RFLLE L DLD LK +LF+V+G P +F +L
Sbjct: 43 GAANVGINRWRFLLEALEDLDCSLKKLNSRLFVVRGQPTDVFPRL 87
>gi|156383457|ref|XP_001632850.1| predicted protein [Nematostella vectensis]
gi|156219912|gb|EDO40787.1| predicted protein [Nematostella vectensis]
Length = 492
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I NR+ FL ECL LDRQL+ G +LF+++G I + +L E + +L FE++ E
Sbjct: 46 ISANRWNFLCECLEALDRQLRVLGSRLFVIRGRAIDVLPRLFHEWSVNRLTFERESEPAG 105
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
+RD ++ N+ + + +H L+D + V++TN P+T+ T +G
Sbjct: 106 RQRDTVIQMLAENANVQLLQHNAHLLYDTDEVLETNDGKLPMTFDEMAKTAEQLG 160
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
+ +Y+ + I NR+ FL ECL LDRQL+ G +LF+++G I + +L E
Sbjct: 31 FPIYVLDMESARASKISANRWNFLCECLEALDRQLRVLGSRLFVIRGRAIDVLPRLFHEW 90
Query: 171 NFTKLCFEQDCE 182
+ +L FE++ E
Sbjct: 91 SVNRLTFERESE 102
>gi|313212920|emb|CBY36823.1| unnamed protein product [Oikopleura dioica]
Length = 476
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 60/106 (56%)
Query: 14 RFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKK 73
RFL+ECL DLD LK +G +L+++ G ++ +K +E T++ + +D E + +RD++
Sbjct: 56 RFLIECLRDLDEGLKKYGTRLYVLTGDATTVIKKFCKENEITQMTWMKDAEIFYRERDEE 115
Query: 74 VKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
+ K I K F+ HTL+D + VI NG P+ + ++
Sbjct: 116 ITKVVHRMEIKTKSFLGHTLYDQDEVIAKNGGKIPMDLSEFYAAIA 161
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 132 RFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
RFL+ECL DLD LK +G +L+++ G ++ +K +E T++ + +D E +
Sbjct: 56 RFLIECLRDLDEGLKKYGTRLYVLTGDATTVIKKFCKENEITQMTWMKDAEIF 108
>gi|452822749|gb|EME29765.1| deoxyribodipyrimidine photo-lyase [Galdieria sulphuraria]
Length = 545
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
IG+ RFRF+LEC+ DLD L+ + +L ++ G P+++ + + + LCFE+D +
Sbjct: 97 IGFQRFRFMLECMKDLDHSLRKYQSKLLVIYGEPVNVLENCCKTWKCSYLCFEKDSDIYS 156
Query: 68 HKRDKKVKKWCAENNITVKEFV--SHTLWDPEVVI-QTNGNVPPLTYKMYLHTVSCIG 122
RD+KV + + V+ FV HTL+D ++++ + NGN PP +L + IG
Sbjct: 157 RNRDEKVLQ--RMKGLGVQCFVESGHTLYDLDMLVAKLNGNSPPTQMTSFLKFIEQIG 212
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 121 IGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
I IG+ RFRF+LEC+ DLD L+ + +L ++ G P+++ + + + LCFE+D
Sbjct: 92 INPDKIGFQRFRFMLECMKDLDHSLRKYQSKLLVIYGEPVNVLENCCKTWKCSYLCFEKD 151
Query: 181 CEAY 184
+ Y
Sbjct: 152 SDIY 155
>gi|242060916|ref|XP_002451747.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor]
gi|241931578|gb|EES04723.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor]
Length = 550
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 63/116 (54%), Gaps = 4/116 (3%)
Query: 3 PGTMHIGYNRFRFLLECLADLD---RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59
PG+ G R RFLLE L+DLD R+L S L ++ LK + N KLCF
Sbjct: 62 PGSARAGVARIRFLLESLSDLDARLRRLGSRLLLLRARDDVADAVCAALK-DWNIGKLCF 120
Query: 60 EQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
E D E RDKKV + + I V VSHTL+DP +I+ NG PPLTY+ ++
Sbjct: 121 ESDTEPYALARDKKVTDFALASGIEVFTPVSHTLFDPAEIIKKNGGRPPLTYQSFV 176
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 117 TVSCIGTMHIGYNRFRFLLECLADLD---RQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173
S G+ G R RFLLE L+DLD R+L S L ++ LK + N
Sbjct: 58 AASSPGSARAGVARIRFLLESLSDLDARLRRLGSRLLLLRARDDVADAVCAALK-DWNIG 116
Query: 174 KLCFEQDCEAY 184
KLCFE D E Y
Sbjct: 117 KLCFESDTEPY 127
>gi|110626125|ref|NP_001034685.1| cryptochrome 4 [Gallus gallus]
gi|34500076|gb|AAQ73619.1| cryptochrome-like protein [Gallus gallus]
Length = 529
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 66/123 (53%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+MHIG R+ FLL+ L DL L+ G L ++QG S+ + ++ N T++ + +
Sbjct: 44 SSMHIGALRWHFLLQSLEDLRSSLRQLGSCLLVIQGEYESVVRDHVQKWNITQVTLDAEM 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGT 123
E + + + ++ E V + H+L++ + +++ NG PPLTYK +L +S +G
Sbjct: 104 EPFYKEMEANIRGLGEELGFQVLSLMGHSLYNTQRILELNGGTPPLTYKRFLRILSLLGD 163
Query: 124 MHI 126
+
Sbjct: 164 PEV 166
Score = 42.4 bits (98), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 109 LTYKMY-LHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLK 167
+ Y +Y L +MHIG R+ FLL+ L DL L+ G L ++QG S+ +
Sbjct: 30 VVYPVYILDRAFMTSSMHIGALRWHFLLQSLEDLRSSLRQLGSCLLVIQGEYESVVRDHV 89
Query: 168 RELNFTKLCFEQDCEAY 184
++ N T++ + + E +
Sbjct: 90 QKWNITQVTLDAEMEPF 106
>gi|326933621|ref|XP_003212899.1| PREDICTED: cryptochrome-1-like [Meleagris gallopavo]
Length = 530
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 65/119 (54%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+MHIG R+ FLL+ L DL L G L ++QG ++ + ++ N T++ + +
Sbjct: 44 SSMHIGALRWHFLLQSLEDLRSSLCQLGSCLLVIQGEYDAVVRDHVQKWNITQVTLDAEM 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E + + + ++ E V + H+L++ + +++ NG PPLTYK +LH +S +G
Sbjct: 104 EPFYKEMEANIRALGEELGFEVLSLMGHSLYNTQRILELNGGTPPLTYKRFLHILSLLG 162
Score = 38.9 bits (89), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 109 LTYKMY-LHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLK 167
+ Y +Y L +MHIG R+ FLL+ L DL L G L ++QG ++ +
Sbjct: 30 VVYPVYILDRAFMTSSMHIGALRWHFLLQSLEDLRSSLCQLGSCLLVIQGEYDAVVRDHV 89
Query: 168 RELNFTKLCFEQDCEAY 184
++ N T++ + + E +
Sbjct: 90 QKWNITQVTLDAEMEPF 106
>gi|343429136|emb|CBQ72710.1| related to Deoxyribodipyrimidine photolyase [Sporisorium reilianum
SRZ2]
Length = 684
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKS--HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NRFRFLLE + L + + S QL +V+G P + +L + N T L E+D A
Sbjct: 50 VGINRFRFLLESMTALSKNITSTQSKSQLLVVRGEPTELLPELWKRWNITHLVIEKDPSA 109
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
+RD+ +++ ++N+ V H L+DPE V++ N P + V+ +G
Sbjct: 110 YGRRRDRLIREAAKKSNVEVVAVQGHHLYDPEEVVKRNKGKPTMALSTLQKIVANMG 166
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 126 IGYNRFRFLLECLADLDRQLKS--HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
+G NRFRFLLE + L + + S QL +V+G P + +L + N T L E+D A
Sbjct: 50 VGINRFRFLLESMTALSKNITSTQSKSQLLVVRGEPTELLPELWKRWNITHLVIEKDPSA 109
Query: 184 Y 184
Y
Sbjct: 110 Y 110
>gi|313234987|emb|CBY24933.1| unnamed protein product [Oikopleura dioica]
Length = 374
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 57/98 (58%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
+ RFL+ECL DLD LK G +L+++ G ++ +K +E T++ + +D E + +RD
Sbjct: 54 KTRFLIECLRDLDEGLKKCGTRLYVLTGDATTVIKKFCKENEITQMTWMKDAEIFYRERD 113
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+++ K I K F+ HTL+D + VI NG P+
Sbjct: 114 EEITKVVHRMEIKTKSFLGHTLYDQDEVIAKNGGKIPM 151
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+ RFL+ECL DLD LK G +L+++ G ++ +K +E T++ + +D E +
Sbjct: 54 KTRFLIECLRDLDEGLKKCGTRLYVLTGDATTVIKKFCKENEITQMTWMKDAEIF 108
>gi|255084421|ref|XP_002508785.1| predicted protein [Micromonas sp. RCC299]
gi|226524062|gb|ACO70043.1| predicted protein [Micromonas sp. RCC299]
Length = 566
Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G NR RFLLE L DLD L++ G L ++ G P + +LC+E D E
Sbjct: 48 VGANRLRFLLESLTDLDASLRARGSSLLVLHGDPARVIPAALEAWRCDRLCYEFDTEPYA 107
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPE-VVIQTNGNVPPLTYKMYL 115
KRD V + + V VSHTLWD + ++ + PP Y +L
Sbjct: 108 QKRDASVNEAARALGVEVHAPVSHTLWDLDRLLAKCPRGEPPTAYASFL 156
Score = 52.8 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR RFLLE L DLD L++ G L ++ G P + +LC+E D E Y
Sbjct: 48 VGANRLRFLLESLTDLDASLRARGSSLLVLHGDPARVIPAALEAWRCDRLCYEFDTEPY 106
>gi|340376095|ref|XP_003386569.1| PREDICTED: cryptochrome-2-like [Amphimedon queenslandica]
Length = 550
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 60/104 (57%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G NR +FLLECL DL QL++ G +L++ QG ++ L +E T L +++ E
Sbjct: 107 GANRLKFLLECLHDLSNQLEALGLKLYVAQGQTTAVLAGLCQEWGVTHLSYQKSQEPRSK 166
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYK 112
++ + + + NI V+EF +HTL+ P +I+ N P LT+K
Sbjct: 167 VEERTISEMASMMNIEVEEFHNHTLYSPTELIKLNEGKPILTFK 210
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
G NR +FLLECL DL QL++ G +L++ QG ++ L +E T L +++ E
Sbjct: 107 GANRLKFLLECLHDLSNQLEALGLKLYVAQGQTTAVLAGLCQEWGVTHLSYQKSQE 162
>gi|388582367|gb|EIM22672.1| hypothetical protein WALSEDRAFT_53945 [Wallemia sebi CBS 633.66]
Length = 554
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 62/111 (55%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G NR++FL+E + +LD +L G +L + + P +F L ++ N T L +E+D
Sbjct: 48 VGPNRYKFLIETMNELDGKLNDMGNKLHVFRADPADLFPALFKQWNITHLVYEKDPAPYA 107
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
+RD+K+K+ + + V + HTL+D + VI+ N P T + + + V
Sbjct: 108 VERDEKIKQIATDAKVEVLDITGHTLYDIDAVIEKNKGEPTTTAQGFKNLV 158
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR++FL+E + +LD +L G +L + + P +F L ++ N T L +E+D Y
Sbjct: 48 VGPNRYKFLIETMNELDGKLNDMGNKLHVFRADPADLFPALFKQWNITHLVYEKDPAPY 106
>gi|71009567|ref|XP_758291.1| hypothetical protein UM02144.1 [Ustilago maydis 521]
gi|46098033|gb|EAK83266.1| hypothetical protein UM02144.1 [Ustilago maydis 521]
Length = 684
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKS--HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NRFRFLLE + L + + S QL +V+G P + +L + + T L FE+D A
Sbjct: 50 VGVNRFRFLLESMIALSKNITSTQSNSQLLVVRGEPTELLPELWKRWSITHLVFEKDPSA 109
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
+RD+ + + ++N+ V H L+DPE V+ N P ++ V+ +G
Sbjct: 110 YGRRRDQLILEAAEKSNVKVVAVQGHHLYDPEQVVNKNKGKPTMSMSTLQKIVADMG 166
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 126 IGYNRFRFLLECLADLDRQLKS--HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
+G NRFRFLLE + L + + S QL +V+G P + +L + + T L FE+D A
Sbjct: 50 VGVNRFRFLLESMIALSKNITSTQSNSQLLVVRGEPTELLPELWKRWSITHLVFEKDPSA 109
Query: 184 Y 184
Y
Sbjct: 110 Y 110
>gi|133754344|gb|ABO38436.1| (6-4) photolyase [Danaus plexippus]
Length = 501
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 66/119 (55%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G NR RFL + L +LD L+ +L++++G I KL E + L + D +A
Sbjct: 51 VGCNRLRFLFQSLKNLDTSLRKINTRLYVIKGKAIECLPKLFDEWHVKFLTLQVDIDADL 110
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHI 126
K+D+ ++++C NNI V + + HT++D V++ N PLTY+ +L VS + I
Sbjct: 111 VKQDEVIEEFCEANNIFVVKRMQHTVYDFNSVVKKNNGSIPLTYQKFLSLVSDVQVKDI 169
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
+G NR RFL + L +LD L+ +L++++G I KL E + L + D +A
Sbjct: 51 VGCNRLRFLFQSLKNLDTSLRKINTRLYVIKGKAIECLPKLFDEWHVKFLTLQVDIDA 108
>gi|453088843|gb|EMF16883.1| FAD_binding_7-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 637
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NR++FL++C D+ + + + +LF+++ +++ KL ++ T L FE+D +A
Sbjct: 49 VGVNRWQFLIDCQNDVSKSITKLNKKSKLFVLREPAVTLLPKLFKKWKITHLVFEKDTDA 108
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTM 124
+RD++V + E + V V TL+DP+ +++ NG P ++ H + IG +
Sbjct: 109 YARERDEQVVRVAGEAGVEVIVKVGRTLYDPDALVKANGGKPTMSMTQLQHAGAKIGDI 167
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 107 PPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQ 164
P + Y ++ + +G NR++FL++C D+ + + + +LF+++ +++
Sbjct: 30 PEVLYPIWCWDSHYVYRARVGVNRWQFLIDCQNDVSKSITKLNKKSKLFVLREPAVTLLP 89
Query: 165 KLKRELNFTKLCFEQDCEAY 184
KL ++ T L FE+D +AY
Sbjct: 90 KLFKKWKITHLVFEKDTDAY 109
>gi|398412077|ref|XP_003857369.1| hypothetical protein MYCGRDRAFT_66122 [Zymoseptoria tritici IPO323]
gi|339477254|gb|EGP92345.1| hypothetical protein MYCGRDRAFT_66122 [Zymoseptoria tritici IPO323]
Length = 670
Score = 69.7 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NR++FL++C+ D+ + + + QLF+++ +++ KL + + L FE+D +A
Sbjct: 49 VGVNRWQFLIDCMNDVSQSITKINKKSQLFVLREPAVTLLPKLFKAWKISHLVFEKDTDA 108
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYK 112
+RD++V + E + V TLWD + +++ NGN P +T K
Sbjct: 109 YGRQRDEQVLESAREAGVEVITKFGRTLWDSDEIVKKNGNKPTMTIK 155
Score = 43.9 bits (102), Expect = 0.028, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 126 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
+G NR++FL++C+ D+ + + + QLF+++ +++ KL + + L FE+D +A
Sbjct: 49 VGVNRWQFLIDCMNDVSQSITKINKKSQLFVLREPAVTLLPKLFKAWKISHLVFEKDTDA 108
Query: 184 Y 184
Y
Sbjct: 109 Y 109
>gi|15341192|gb|AAK94666.1| cryptochrome 2a [Xenopus laevis]
Length = 501
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%)
Query: 26 QLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85
L++ +LF+V+G P +F +L +E ++L FE D E +RD + K E + V
Sbjct: 2 SLRTLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAKEAGVEV 61
Query: 86 KEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
SHTL+D + +I+ NG+ PPLTYK + +S
Sbjct: 62 VVENSHTLYDLDRIIELNGHSPPLTYKRFQAIIS 95
>gi|452848446|gb|EME50378.1| hypothetical protein DOTSEDRAFT_145202, partial [Dothistroma
septosporum NZE10]
Length = 640
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NRF+FL++C DL + + + +LF+++ +++ KL +E T L FE+D +A
Sbjct: 49 VGVNRFQFLIDCQNDLSKSITKLNKKSKLFVMREPAVTLLPKLFKEWKITHLVFEKDTDA 108
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTM 124
+RD++V K + + V TLWDP+ +++ +G P ++ + IG +
Sbjct: 109 YAKERDQQVVKMAEDAGVEVIVKTGRTLWDPDELVKAHGGKPTMSINQLQAAGAKIGEI 167
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 126 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
+G NRF+FL++C DL + + + +LF+++ +++ KL +E T L FE+D +A
Sbjct: 49 VGVNRFQFLIDCQNDLSKSITKLNKKSKLFVMREPAVTLLPKLFKEWKITHLVFEKDTDA 108
Query: 184 Y 184
Y
Sbjct: 109 Y 109
>gi|313228844|emb|CBY17995.1| unnamed protein product [Oikopleura dioica]
Length = 525
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 59/114 (51%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
IG NR RFLLE L DLD L+ G +LF+++G+ + + RE T++ + +D E +
Sbjct: 53 IGNNRIRFLLESLTDLDENLRKIGTRLFVLRGNARTAIKTFCREYEITQMTYMRDAEVFY 112
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
+ + ++ + I + HTL+DP+ +I N PL+ + + +
Sbjct: 113 RQLEAEILEEVNRREIVTRSDHGHTLYDPQEIIDANEGQVPLSLDEFYSVIPSL 166
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
IG NR RFLLE L DLD L+ G +LF+++G+ + + RE T++ + +D E +
Sbjct: 53 IGNNRIRFLLESLTDLDENLRKIGTRLFVLRGNARTAIKTFCREYEITQMTYMRDAEVF 111
>gi|170878123|gb|ACB38886.1| putative 6-4 photolyase [Cercospora zeae-maydis]
Length = 691
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NR++FL++C D+ + + +LF+++ +++ KL + T L FE+D +A
Sbjct: 49 VGVNRWQFLIDCQNDVSESITKLNQKSKLFVLREPAVTLLPKLFKAWKITHLVFEKDTDA 108
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTM 124
+RD+KV E + V V TL+DP+ +++ NG P ++ H + IG +
Sbjct: 109 YARERDEKVMHMAGEAGVKVIVKVGRTLYDPDEIVKNNGGKPTMSITQLQHAGNKIGEI 167
Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 107 PPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQ 164
P + Y ++ + +G NR++FL++C D+ + + +LF+++ +++
Sbjct: 30 PEVLYPIWCWDSHYVYRARVGVNRWQFLIDCQNDVSESITKLNQKSKLFVLREPAVTLLP 89
Query: 165 KLKRELNFTKLCFEQDCEAY 184
KL + T L FE+D +AY
Sbjct: 90 KLFKAWKITHLVFEKDTDAY 109
>gi|389748358|gb|EIM89535.1| DNA photolyase [Stereum hirsutum FP-91666 SS1]
Length = 629
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NR++FLL+C DL + LK + +L +++ +P ++ +L R+ T L FE+D ++
Sbjct: 49 VGPNRWQFLLDCQNDLSQTLKRLNTKQRLLVLREAPQTLLPRLCRDWKITHLVFEEDTDS 108
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGT 123
+RD V+ E + V + V TLWDP+ V++ NG +T + + + T
Sbjct: 109 YALERDIDVEAKVREAGVEVVKAVGRTLWDPKEVVEKNGGQATMTLNALMKITAKLAT 166
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 24/93 (25%)
Query: 94 WDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLK--SHGGQ 151
WDP V+Q +G NR++FLL+C DL + LK + +
Sbjct: 39 WDPHYVLQA----------------------RVGPNRWQFLLDCQNDLSQTLKRLNTKQR 76
Query: 152 LFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
L +++ +P ++ +L R+ T L FE+D ++Y
Sbjct: 77 LLVLREAPQTLLPRLCRDWKITHLVFEEDTDSY 109
>gi|389622365|ref|XP_003708836.1| cryptochrome-1 [Magnaporthe oryzae 70-15]
gi|351648365|gb|EHA56224.1| cryptochrome-1 [Magnaporthe oryzae 70-15]
gi|440473506|gb|ELQ42297.1| cryptochrome-1 [Magnaporthe oryzae Y34]
gi|440489726|gb|ELQ69353.1| cryptochrome-1 [Magnaporthe oryzae P131]
Length = 679
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 9 GYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
G NR+++LL+C DL + + +LF+++ +P S+F KL + T L FE+D +A
Sbjct: 50 GLNRWQYLLDCQNDLSASITNLNPRSKLFVLREAPQSLFPKLFKAWKVTHLVFEKDTDAY 109
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+RD+ VKK + V TLWD + +++ NG P ++
Sbjct: 110 ARQRDEVVKKAAQAAGVKVITRYGRTLWDSDAIVKANGGEPTMS 153
Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 24/93 (25%)
Query: 94 WDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHG--GQ 151
WDP V ++ G G NR+++LL+C DL + + +
Sbjct: 39 WDPHYVYRSRG----------------------GLNRWQYLLDCQNDLSASITNLNPRSK 76
Query: 152 LFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
LF+++ +P S+F KL + T L FE+D +AY
Sbjct: 77 LFVLREAPQSLFPKLFKAWKVTHLVFEKDTDAY 109
>gi|46390519|dbj|BAD16007.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]
gi|51536259|dbj|BAD38427.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]
Length = 560
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 65/126 (51%), Gaps = 13/126 (10%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QGSPISIFQKLKRELNFTKLC 58
PG+ G R RFLLE L+DLD +L+ G +L ++ G ++ N KLC
Sbjct: 63 PGSARAGVARVRFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLC 122
Query: 59 FEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQ---------TNGNVPPL 109
FE D E RDKKV + A + I V VSHTL+DP +I+ NG PP+
Sbjct: 123 FESDTEPYALARDKKVMDFAAASGIDVFSPVSHTLFDPAEIIEKFLFSFGKWKNGGRPPM 182
Query: 110 TYKMYL 115
TY+ ++
Sbjct: 183 TYQSFV 188
>gi|392574712|gb|EIW67847.1| hypothetical protein TREMEDRAFT_21150, partial [Tremella
mesenterica DSM 1558]
Length = 548
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGG--QLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NR+ FLLE + DL QL S +L + +GSP + L RE T + +E+D A
Sbjct: 46 VGLNRWSFLLESMKDLSDQLTSLNPRQKLHVCRGSPEEVLPVLWREWGITHIVWEKDANA 105
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMH 125
RD+ +K+ E + V + L+DP++V + NG P +T + + + IG +
Sbjct: 106 YAKIRDECIKRLAKEKGVVVVDVPGRHLFDPDLVGRMNGGKPTMTLQQWQNITKKIGKVE 165
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGG--QLFIVQGSPISIFQKLKR 168
Y ++ S I +G NR+ FLLE + DL QL S +L + +GSP + L R
Sbjct: 31 YPIWCWDPSYIYGHRVGLNRWSFLLESMKDLSDQLTSLNPRQKLHVCRGSPEEVLPVLWR 90
Query: 169 ELNFTKLCFEQDCEAY 184
E T + +E+D AY
Sbjct: 91 EWGITHIVWEKDANAY 106
>gi|321453621|gb|EFX64839.1| hypothetical protein DAPPUDRAFT_65902 [Daphnia pulex]
Length = 92
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G NR+RFL++ L DL+ LK G LF+++ SP +F+K +E N KL FE + E
Sbjct: 4 VGPNRWRFLIQSLQDLNDNLKKIGSCLFLLKESPTEMFKKYFKEWNIKKLTFEVEIEPYA 63
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWD 95
+D+++KK +++ V VSHT++D
Sbjct: 64 KTQDEEIKKLADHHSVPVVVKVSHTIYD 91
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFL++ L DL+ LK G LF+++ SP +F+K +E N KL FE + E Y
Sbjct: 4 VGPNRWRFLIQSLQDLNDNLKKIGSCLFLLKESPTEMFKKYFKEWNIKKLTFEVEIEPY 62
>gi|51948352|gb|AAU14280.1| cryptochrome-like protein 1 [Ostreococcus tauri]
Length = 559
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 6/150 (4%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G NR RFLL+ L DLD QL++ G L ++ G P + + ++ + +E D E
Sbjct: 56 VGANRMRFLLQSLRDLDAQLRARGSSLLVLHGEPRVVLPRACKKWRVDSVTWEHDIEPYA 115
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIG 127
RD V+ + HTL+D + +++ PP TY+ + V +G +
Sbjct: 116 KIRDAAVRGALERAGVECHAASGHTLYDVDEMLEKCKGAPPTTYQGFFKIVDKMGAPNAP 175
Query: 128 YNRFRFLLECLADLDRQLKSHGGQLFIVQG 157
+ + A D + K+ +VQG
Sbjct: 176 IDAMEKMPGSFASSDEETKA------LVQG 199
Score = 49.7 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR RFLL+ L DLD QL++ G L ++ G P + + ++ + +E D E Y
Sbjct: 56 VGANRMRFLLQSLRDLDAQLRARGSSLLVLHGEPRVVLPRACKKWRVDSVTWEHDIEPY 114
>gi|308803621|ref|XP_003079123.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
gi|116057578|emb|CAL53781.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
Length = 1646
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 6/150 (4%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G NR RFLL+ L DLD QL++ G L ++ G P + + ++ + +E D E
Sbjct: 1143 VGANRMRFLLQSLRDLDAQLRARGSSLLVLHGEPRVVLPRACKKWRVDSVTWEHDIEPYA 1202
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIG 127
RD V+ + HTL+D + +++ PP TY+ + V +G +
Sbjct: 1203 KIRDAAVRGALERAGVECHAASGHTLYDVDEMLEKCKGAPPTTYQGFFKIVDKMGAPNAP 1262
Query: 128 YNRFRFLLECLADLDRQLKSHGGQLFIVQG 157
+ + A D + K+ +VQG
Sbjct: 1263 IDAMEKMPGSFASSDEETKA------LVQG 1286
Score = 49.7 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR RFLL+ L DLD QL++ G L ++ G P + + ++ + +E D E Y
Sbjct: 1143 VGANRMRFLLQSLRDLDAQLRARGSSLLVLHGEPRVVLPRACKKWRVDSVTWEHDIEPY 1201
>gi|322782527|gb|EFZ10476.1| hypothetical protein SINV_15449 [Solenopsis invicta]
Length = 81
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%)
Query: 14 RFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKK 73
RFLL+CL DLD L+ +LF+++G P KL +E T L FE+D E RD
Sbjct: 1 RFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHN 60
Query: 74 VKKWCAENNITVKEFVSHTLW 94
+ C E I+V + +SHTL+
Sbjct: 61 ISALCEELGISVVQRISHTLY 81
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 132 RFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
RFLL+CL DLD L+ +LF+++G P KL +E T L FE+D E +
Sbjct: 1 RFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPF 53
>gi|148226272|ref|NP_001088990.1| Cry1 protein [Xenopus laevis]
gi|49899105|gb|AAH76838.1| Cry1 protein [Xenopus laevis]
Length = 556
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 64/115 (55%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
IG R+ FLL+ + DL L+ LF++QG S+ ++ ++ + T++ F+ + E +
Sbjct: 48 IGSKRWNFLLQSIEDLHCNLQKLNSCLFVIQGDYQSVLREHVQKWHITQVTFDLEIEPYY 107
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
D++++ E V V+HTL+D + ++ N PPLTYK +L +S +G
Sbjct: 108 KGMDERIRAMGQELGFDVVSKVAHTLYDVKSILALNYGKPPLTYKNFLRVLSVLG 162
Score = 36.6 bits (83), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
IG R+ FLL+ + DL L+ LF++QG S+ ++ ++ + T++ F+ + E Y
Sbjct: 48 IGSKRWNFLLQSIEDLHCNLQKLNSCLFVIQGDYQSVLREHVQKWHITQVTFDLEIEPY 106
>gi|169617021|ref|XP_001801925.1| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15]
gi|160703316|gb|EAT80731.2| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15]
Length = 1229
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NR+++L++C DL + + + +LF+++ +P ++F KL + T L FE+D +A
Sbjct: 616 VGSNRWQYLIDCQNDLSQSITKLNPKSKLFLIREAPQTLFPKLFKAWKITHLVFEKDTDA 675
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+RD+KV + E + V V TL+DP+ +++ N P ++
Sbjct: 676 YARERDEKVMEIAKEAGVEVVIKVGRTLYDPDELVKENNGKPTMS 720
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 126 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
+G NR+++L++C DL + + + +LF+++ +P ++F KL + T L FE+D +A
Sbjct: 616 VGSNRWQYLIDCQNDLSQSITKLNPKSKLFLIREAPQTLFPKLFKAWKITHLVFEKDTDA 675
Query: 184 Y 184
Y
Sbjct: 676 Y 676
>gi|451847270|gb|EMD60578.1| hypothetical protein COCSADRAFT_244496 [Cochliobolus sativus
ND90Pr]
Length = 654
Score = 65.9 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NR+++L++C DL + + + +LF+++ +P ++F KL + N T L FE+D +A
Sbjct: 49 VGPNRWQYLIDCQNDLSKSITKLNPKSKLFLIREAPQTLFPKLFKAWNITHLVFEKDTDA 108
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+RD KV + + + V TL+DP+ +++ N P ++
Sbjct: 109 YARERDAKVMEIAKQAGVDVITKTGRTLYDPDDLVKNNNGKPTMS 153
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 126 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
+G NR+++L++C DL + + + +LF+++ +P ++F KL + N T L FE+D +A
Sbjct: 49 VGPNRWQYLIDCQNDLSKSITKLNPKSKLFLIREAPQTLFPKLFKAWNITHLVFEKDTDA 108
Query: 184 Y 184
Y
Sbjct: 109 Y 109
>gi|451997801|gb|EMD90266.1| hypothetical protein COCHEDRAFT_1139413, partial [Cochliobolus
heterostrophus C5]
Length = 650
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NR+++L++C DL + + + +LF+++ +P ++F KL + N T L FE+D +A
Sbjct: 49 VGPNRWQYLIDCQNDLSKSITKLNPKSKLFLIREAPQTLFPKLFKAWNITHLVFEKDTDA 108
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+RD KV + + + V TL+DP+ +++ N P ++
Sbjct: 109 YARERDAKVMEIAKQAGVDVITKTGRTLYDPDDLVKNNNGKPTMS 153
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 126 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
+G NR+++L++C DL + + + +LF+++ +P ++F KL + N T L FE+D +A
Sbjct: 49 VGPNRWQYLIDCQNDLSKSITKLNPKSKLFLIREAPQTLFPKLFKAWNITHLVFEKDTDA 108
Query: 184 Y 184
Y
Sbjct: 109 Y 109
>gi|121705010|ref|XP_001270768.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1]
gi|119398914|gb|EAW09342.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1]
Length = 613
Score = 65.5 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NR++FLLEC +DL + +L++V+ +P S+ KL ++ T L FEQD +A
Sbjct: 48 VGPNRWKFLLECQSDLSAAYTTLNPKQRLWVVREAPQSVLPKLWKKWQITHLVFEQDTDA 107
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
RD+ V + + + V + TL+DP+ +++ NG P ++
Sbjct: 108 YARDRDEAVLRMARDAGVEVIVQMGRTLFDPDELVRKNGGKPTMS 152
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 27/123 (21%)
Query: 67 WHKRDKKVKKWCAENN---ITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGT 123
WH+ D ++ A + + F+ WDP V +T
Sbjct: 8 WHRTDLRLHDSPALHAALALNPSIFIPIWTWDPHYVYRT--------------------- 46
Query: 124 MHIGYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+G NR++FLLEC +DL + +L++V+ +P S+ KL ++ T L FEQD
Sbjct: 47 -RVGPNRWKFLLECQSDLSAAYTTLNPKQRLWVVREAPQSVLPKLWKKWQITHLVFEQDT 105
Query: 182 EAY 184
+AY
Sbjct: 106 DAY 108
>gi|170065332|ref|XP_001867895.1| cryptochrome-1 [Culex quinquefasciatus]
gi|167882412|gb|EDS45795.1| cryptochrome-1 [Culex quinquefasciatus]
Length = 539
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 2/126 (1%)
Query: 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNIT 84
R L+ +L +V+G+P+ +F +L RE N T L FE D E KRD V++ + +
Sbjct: 51 RWLRVGPNRLHVVRGNPVEMFPELFREWNVTLLTFEHDIEPYSVKRDATVRELARQAKVE 110
Query: 85 VKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS-CIGTMHIGYNRFRFLLECLADLDR 143
V+ S T++DP+ +++ NG PLTY+ Y S C IG + E + + D+
Sbjct: 111 VQVEKSLTIYDPDEILKKNGGKIPLTYQKYGSLASMCKTPGPIGVPD-KVPAESVPEKDK 169
Query: 144 QLKSHG 149
+ + G
Sbjct: 170 RERKDG 175
Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 143 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
R L+ +L +V+G+P+ +F +L RE N T L FE D E Y
Sbjct: 51 RWLRVGPNRLHVVRGNPVEMFPELFREWNVTLLTFEHDIEPY 92
>gi|443894766|dbj|GAC72113.1| deoxyribodipyrimidine photolyase [Pseudozyma antarctica T-34]
Length = 685
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKS--HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NRFRFLLE + L ++ + QL +V+G P + +L + + T L E+D A
Sbjct: 50 VGVNRFRFLLESMNALSERITATQSNSQLLVVRGEPTELLPELWKRWDITHLVIEKDPSA 109
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
+RD +++ ++ I V H L+DPE V + N P + VS +G
Sbjct: 110 YGRRRDTLIREAAKKSKIEVVAVQGHHLFDPEEVAKRNKGKPTMAMSTLQKIVSDMG 166
Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 126 IGYNRFRFLLECLADLDRQLKS--HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
+G NRFRFLLE + L ++ + QL +V+G P + +L + + T L E+D A
Sbjct: 50 VGVNRFRFLLESMNALSERITATQSNSQLLVVRGEPTELLPELWKRWDITHLVIEKDPSA 109
Query: 184 Y 184
Y
Sbjct: 110 Y 110
>gi|147865945|emb|CAN80978.1| hypothetical protein VITISV_029095 [Vitis vinifera]
Length = 633
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 54/114 (47%), Gaps = 26/114 (22%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPIS-IFQKLKRELNFTKLCFEQ 61
PG+ G NR RFLLE L DLD L+ G +L +++G P I Q LK
Sbjct: 200 PGSSRAGLNRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIQCLK------------ 247
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
K + + I V VSHTL+D +IQ NG PPL+Y+ +L
Sbjct: 248 -------------KNYASAAGIEVFSPVSHTLFDSADIIQKNGGRPPLSYQSFL 288
Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPIS-IFQKLKR 168
G+ G NR RFLLE L DLD L+ G +L +++G P I Q LK+
Sbjct: 201 GSSRAGLNRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIQCLKK 248
>gi|301121222|ref|XP_002908338.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262103369|gb|EEY61421.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 568
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P M G NRF+F+LE +ADL L G +L + +G I + +++ + T + F+
Sbjct: 44 PQIMRCGANRFQFVLESVADLSGALAERGSKLVVAKGDSIQVLRRVLPAWDITHMFFDGV 103
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
CE +RD + + + L+D EVVI ++ P TY+ +L V
Sbjct: 104 CEPYAVERDDRALALAKSLGVQTHVTKGYNLYDLEVVIASHSGKAPKTYQRFLKAVGAQP 163
Query: 123 T 123
T
Sbjct: 164 T 164
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
M G NRF+F+LE +ADL L G +L + +G I + +++ + T + F+ CE
Sbjct: 47 MRCGANRFQFVLESVADLSGALAERGSKLVVAKGDSIQVLRRVLPAWDITHMFFDGVCEP 106
Query: 184 Y 184
Y
Sbjct: 107 Y 107
>gi|167526345|ref|XP_001747506.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773952|gb|EDQ87586.1| predicted protein [Monosiga brevicollis MX1]
Length = 486
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F ++G R+ FLLE L DLD QL+ G +L++++G P K +E T+L +E
Sbjct: 43 FAKPENVGVLRYNFLLESLKDLDEQLRGLGSRLYVLRGKPEEQLPKKFKEWKVTRLTYEL 102
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNV 106
D E RD + ++N+ V H L DPE ++ G
Sbjct: 103 DTEPYARVRDAAINDLAKKHNVEVIAEAGHMLHDPESYLKKCGGA 147
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 125 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
++G R+ FLLE L DLD QL+ G +L++++G P K +E T+L +E D E Y
Sbjct: 48 NVGVLRYNFLLESLKDLDEQLRGLGSRLYVLRGKPEEQLPKKFKEWKVTRLTYELDTEPY 107
>gi|194332801|ref|NP_001123706.1| uncharacterized protein LOC100170456 [Xenopus (Silurana)
tropicalis]
gi|189442599|gb|AAI67313.1| LOC100170456 protein [Xenopus (Silurana) tropicalis]
Length = 557
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 61/116 (52%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
IG R+ F L+ + DL L+ LF++QG + ++ + N T++ F+ + E +
Sbjct: 48 IGSKRWNFFLQSIEDLHCNLQKLNSCLFVIQGDYERVLREHVEKWNITQVTFDLEIEPYY 107
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGT 123
D++++ E V V+HTL+D + ++ N PPLTYK +L +S +G
Sbjct: 108 KGLDERIRAMGQELGFEVVSMVAHTLYDIKKILALNCGKPPLTYKNFLRVLSMLGN 163
>gi|310791567|gb|EFQ27094.1| DNA photolyase [Glomerella graminicola M1.001]
Length = 628
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 9 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
G NR++FLL+C DL + + +LF+++ P ++F KL + T L FE+D +A
Sbjct: 51 GLNRWQFLLDCQNDLSESITKLNSRSKLFVLREGPQTLFPKLFKAWKVTHLVFEKDTDAY 110
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+RD+ V + +E + V TLWD + V+ +G P ++
Sbjct: 111 ARERDEVVMRAASEAGVEVIVKSGRTLWDSDAVVAKHGGKPTMS 154
Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 24/93 (25%)
Query: 94 WDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLK--SHGGQ 151
WDP V + G G NR++FLL+C DL + + +
Sbjct: 40 WDPHYVYRARG----------------------GLNRWQFLLDCQNDLSESITKLNSRSK 77
Query: 152 LFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
LF+++ P ++F KL + T L FE+D +AY
Sbjct: 78 LFVLREGPQTLFPKLFKAWKVTHLVFEKDTDAY 110
>gi|145346348|ref|XP_001417651.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577879|gb|ABO95944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 562
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 51/115 (44%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G NR RFLL+ L DLD L+ G L ++ G P + + + + +E D E
Sbjct: 55 VGANRMRFLLQSLRDLDATLRERGSSLLVLHGEPRVVLPRACKTWKVDLVTWEHDIEPYA 114
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
RD V+ + HTL+D E ++ PP TY +L V +G
Sbjct: 115 KMRDTAVRGALERAGVECASSSGHTLYDVEEMLAKCHGKPPTTYSQFLKIVDKMG 169
Score = 45.1 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR RFLL+ L DLD L+ G L ++ G P + + + + +E D E Y
Sbjct: 55 VGANRMRFLLQSLRDLDATLRERGSSLLVLHGEPRVVLPRACKTWKVDLVTWEHDIEPY 113
>gi|358394356|gb|EHK43749.1| DNA photolyase [Trichoderma atroviride IMI 206040]
Length = 625
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 9 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
G NR++FLL+C DL + + +LF+++ P ++F KL + T L FE+D +A
Sbjct: 50 GVNRWQFLLDCQNDLSDSITKLNKNSKLFVLREGPQTLFPKLFKAWKPTHLVFEKDTDAY 109
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
RD+ V K E + V TLWD + +++ +G P ++
Sbjct: 110 GRSRDEAVAKAAQEAGVKVIIRSGRTLWDSDGIVEKHGGKPTMS 153
Score = 45.1 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 24/93 (25%)
Query: 94 WDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLK--SHGGQ 151
WDP V + G G NR++FLL+C DL + + +
Sbjct: 39 WDPHYVYKARG----------------------GVNRWQFLLDCQNDLSDSITKLNKNSK 76
Query: 152 LFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
LF+++ P ++F KL + T L FE+D +AY
Sbjct: 77 LFVLREGPQTLFPKLFKAWKPTHLVFEKDTDAY 109
>gi|325180459|emb|CCA14865.1| cryptochrome putative [Albugo laibachii Nc14]
Length = 616
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P G RF+FLLECL D+D L+ +L + G IS L + T L FE+
Sbjct: 112 PENKKCGAVRFQFLLECLEDIDTSLRQKQSRLLVFCGEAISFLTVLMQAWKITDLIFEKF 171
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
KRD+K+ +I V TL DP+ ++ N N PL ++ +L VS
Sbjct: 172 QLPYAIKRDEKIMSMAQTLHINVTTVSGATLHDPKEIVTLNHNQVPLDFQNFLDIVS 228
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179
G RF+FLLECL D+D L+ +L + G IS L + T L FE+
Sbjct: 118 GAVRFQFLLECLEDIDTSLRQKQSRLLVFCGEAISFLTVLMQAWKITDLIFEK 170
>gi|224002945|ref|XP_002291144.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana
CCMP1335]
gi|220972920|gb|EED91251.1| Cryptochrome/Photolyase family 1, partial [Thalassiosira pseudonana
CCMP1335]
Length = 556
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD--CEALWHK 69
R RFLLEC++DLD+ L+ G +L++ G P+ + +L +E T + E D E
Sbjct: 65 RARFLLECISDLDKSLRERGSRLYVATGDPLEVLPELWKEWGVTHVTHEADETGEPYAVA 124
Query: 70 RDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVP 107
RD+ V+ +N + V EF S TL + GNVP
Sbjct: 125 RDEGVRSVAKKNGVQVMEFRSETL-------RPLGNVP 155
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
Y +Y+ +C + R RFLLEC++DLD+ L+ G +L++ G P+ + +L +E
Sbjct: 46 YPVYIVDPNCYQLLKCSVLRARFLLECISDLDKSLRERGSRLYVATGDPLEVLPELWKEW 105
Query: 171 NFTKLCFEQD 180
T + E D
Sbjct: 106 GVTHVTHEAD 115
>gi|189188250|ref|XP_001930464.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972070|gb|EDU39569.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 655
Score = 62.4 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NR+++LL+C DL + + + +LF+++ +P ++F KL + T + FE+D +A
Sbjct: 49 VGPNRWQYLLDCQDDLSKSITKLNPKSKLFVIREAPQTLFPKLFKAWKITHMVFEKDTDA 108
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+RD KV + ++ + V TL+DP+ +++ N P ++
Sbjct: 109 YARERDDKVLEIARKSGVEVVVKTGRTLYDPDELVKQNHGKPTMS 153
Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 126 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
+G NR+++LL+C DL + + + +LF+++ +P ++F KL + T + FE+D +A
Sbjct: 49 VGPNRWQYLLDCQDDLSKSITKLNPKSKLFVIREAPQTLFPKLFKAWKITHMVFEKDTDA 108
Query: 184 Y 184
Y
Sbjct: 109 Y 109
>gi|293321543|emb|CAZ66367.1| cryptochrome [Suberites domuncula]
Length = 517
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 11 NRFRFLLECLADLDRQL--KSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD---CEA 65
N +RFLLE L DLD +L K + +L ++ G P I +L ++ N K+ F+ E+
Sbjct: 71 NVWRFLLEALHDLDSRLQKKPYCARLNVLYGQPTMILPELYKKWNVKKITFQASQVSSES 130
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
+ K D +K + N+ + SHTL+DP VI N PL+YK + + +G
Sbjct: 131 M--KHDGIIKILSEQQNVQAVSYFSHTLYDPANVIALNNGRVPLSYKEFRRLMPLMG 185
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 129 NRFRFLLECLADLDRQL--KSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
N +RFLLE L DLD +L K + +L ++ G P I +L ++ N K+ F+
Sbjct: 71 NVWRFLLEALHDLDSRLQKKPYCARLNVLYGQPTMILPELYKKWNVKKITFQ 122
>gi|298708156|emb|CBJ30497.1| cryptochrome 1 [Ectocarpus siliculosus]
Length = 542
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R FLLE L DLD QL++ G +LF+V+G P + +L E N KL FE D E
Sbjct: 53 GPLRTAFLLESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSR 112
Query: 69 KRDKKVKKWCAENNITV 85
RD++V E + V
Sbjct: 113 ARDREVGSLAKEAGVQV 129
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 34/56 (60%)
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
G R FLLE L DLD QL++ G +LF+V+G P + +L E N KL FE D E
Sbjct: 53 GPLRTAFLLESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSE 108
>gi|342883710|gb|EGU84160.1| hypothetical protein FOXB_05337 [Fusarium oxysporum Fo5176]
Length = 637
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 9 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
G NR++FLL+C DL R + + +LF+++ +P ++F KL + T L FE+D ++
Sbjct: 50 GLNRWQFLLDCQNDLSRSISQVNPKSKLFVLREAPQTLFPKLFKAWKVTHLVFEKDTDSY 109
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTM 124
+RD V + + + V TLWD + +++ +G P ++ S +G +
Sbjct: 110 GRERDSVVVQAAKDAGVEVLVRSGRTLWDSDQIVEKHGGKPTMSITQLQTAGSKLGEI 167
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 127 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
G NR++FLL+C DL R + + +LF+++ +P ++F KL + T L FE+D ++Y
Sbjct: 50 GLNRWQFLLDCQNDLSRSISQVNPKSKLFVLREAPQTLFPKLFKAWKVTHLVFEKDTDSY 109
>gi|340518659|gb|EGR48899.1| DNA photolyase [Trichoderma reesei QM6a]
Length = 628
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NRF+FLL+C DL + + + +LF+++ P ++F KL T L FE+D +
Sbjct: 49 VGVNRFQFLLDCQNDLSQSITKLNKKSKLFVLREGPQTLFPKLFEAWKPTHLVFEKDTDT 108
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
RD+ V K E + V TLWD + ++ + P +T
Sbjct: 109 YARTRDEAVVKAAKEAGVEVITRSGRTLWDSDEIVAHHDGKPTMT 153
Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 126 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
+G NRF+FLL+C DL + + + +LF+++ P ++F KL T L FE+D +
Sbjct: 49 VGVNRFQFLLDCQNDLSQSITKLNKKSKLFVLREGPQTLFPKLFEAWKPTHLVFEKDTDT 108
Query: 184 Y 184
Y
Sbjct: 109 Y 109
>gi|402076336|gb|EJT71759.1| cryptochrome-1 [Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 661
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 9 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
G NR++FLL+C DL + + +LF+++ +P ++F KL + + T + FE+D ++
Sbjct: 50 GLNRWQFLLDCQNDLSASINKLNPKSKLFVLREAPQTLFPKLFKAWDVTHIVFEKDTDSY 109
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+RD V + + + V TLWD + V+ NG P ++
Sbjct: 110 ARRRDAVVTQAARDAGVRVITRCGRTLWDSDRVVIANGGEPTMS 153
Score = 44.7 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 24/93 (25%)
Query: 94 WDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLK--SHGGQ 151
WDP V + G G NR++FLL+C DL + + +
Sbjct: 39 WDPHYVYRARG----------------------GLNRWQFLLDCQNDLSASINKLNPKSK 76
Query: 152 LFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
LF+++ +P ++F KL + + T + FE+D ++Y
Sbjct: 77 LFVLREAPQTLFPKLFKAWDVTHIVFEKDTDSY 109
>gi|396460940|ref|XP_003835082.1| hypothetical protein LEMA_P072250.1 [Leptosphaeria maculans JN3]
gi|312211632|emb|CBX91717.1| hypothetical protein LEMA_P072250.1 [Leptosphaeria maculans JN3]
Length = 709
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQ--LFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NR+++LL+C DL + + Q LF+++ +P ++F KL + T L FE+D +A
Sbjct: 95 VGPNRWQYLLDCQKDLSKSITKVNPQSKLFVIREAPQTLFPKLFKAWQITHLVFEKDTDA 154
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+RD++V + + V TL+DP+ +++ N P ++
Sbjct: 155 YGRERDEQVMELAKTAGVEVVVKTGRTLYDPDELVRQNHGKPTMS 199
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 107 PPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQ--LFIVQGSPISIFQ 164
P Y ++ + +G NR+++LL+C DL + + Q LF+++ +P ++F
Sbjct: 76 PDCLYPIWTWDPHYVYRARVGPNRWQYLLDCQKDLSKSITKVNPQSKLFVIREAPQTLFP 135
Query: 165 KLKRELNFTKLCFEQDCEAY 184
KL + T L FE+D +AY
Sbjct: 136 KLFKAWQITHLVFEKDTDAY 155
>gi|134082999|emb|CAK42762.1| unnamed protein product [Aspergillus niger]
Length = 567
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 6 MHIGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+ +G NR+RFLLEC DL + + + +L++V+ +P ++F KL + T L FE D
Sbjct: 50 VRVGPNRWRFLLECQNDLSQSYRKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDT 109
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+ +RD+ ++K E + V TL+D + V++ N P ++
Sbjct: 110 DGYARERDETIRKLANEAGVEVIVKSGRTLFDSDEVVKQNKGEPTMS 156
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 124 MHIGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ +G NR+RFLLEC DL + + + +L++V+ +P ++F KL + T L FE D
Sbjct: 50 VRVGPNRWRFLLECQNDLSQSYRKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDT 109
Query: 182 EAY 184
+ Y
Sbjct: 110 DGY 112
>gi|427711391|ref|YP_007060015.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 6312]
gi|427375520|gb|AFY59472.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 6312]
Length = 486
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G I R +L+ CL DL +Q G QL I+QG P ++ KL + L L + D
Sbjct: 54 GGEDIAAVRVAYLVGCLEDLAQQYHQAGSQLLILQGEPTTVIPKLAQALKAQALYWHCDV 113
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNV 106
E RDK V + A+ I+V+ F L PE + +G +
Sbjct: 114 EPYAQARDKAVAQALAKAGISVQTFWDQLLVAPEAIRTGSGAI 156
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 121 IGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
+G I R +L+ CL DL +Q G QL I+QG P ++ KL + L L + D
Sbjct: 53 LGGEDIAAVRVAYLVGCLEDLAQQYHQAGSQLLILQGEPTTVIPKLAQALKAQALYWHCD 112
Query: 181 CEAY 184
E Y
Sbjct: 113 VEPY 116
>gi|317036499|ref|XP_001397458.2| DNA photolyase [Aspergillus niger CBS 513.88]
Length = 641
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 6 MHIGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+ +G NR+RFLLEC DL + + + +L++V+ +P ++F KL + T L FE D
Sbjct: 50 VRVGPNRWRFLLECQNDLSQSYRKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDT 109
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+ +RD+ ++K E + V TL+D + V++ N P ++
Sbjct: 110 DGYARERDETIRKLANEAGVEVIVKSGRTLFDSDEVVKQNKGEPTMS 156
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 124 MHIGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ +G NR+RFLLEC DL + + + +L++V+ +P ++F KL + T L FE D
Sbjct: 50 VRVGPNRWRFLLECQNDLSQSYRKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDT 109
Query: 182 EAY 184
+ Y
Sbjct: 110 DGY 112
>gi|301097563|ref|XP_002897876.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262106624|gb|EEY64676.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 656
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P M G NRF+FLLE ++DL L + G +L + +G + + ++L + L F+
Sbjct: 137 PKIMLCGVNRFQFLLESVSDLADALAARGSRLVVARGDGVQVLRRLLPAWRISHLFFDAA 196
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSH--TLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
E RD + + + V+ V+H TL+D + VI N PP TY +L ++
Sbjct: 197 SEPFAIDRDNRAVALARQ--LGVETHVTHGYTLYDLDAVIAGNNGEPPKTYTAFLRALA 253
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
M G NRF+FLLE ++DL L + G +L + +G + + ++L + L F+ E
Sbjct: 140 MLCGVNRFQFLLESVSDLADALAARGSRLVVARGDGVQVLRRLLPAWRISHLFFDAASEP 199
Query: 184 Y 184
+
Sbjct: 200 F 200
>gi|406867153|gb|EKD20192.1| cryptochrome-2 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 650
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NR++FL++C D+ + + + +LF+++ +P ++F KL + T L FE+D +A
Sbjct: 49 VGTNRWQFLIDCQDDVSKSITKLNEKSKLFLMREAPQTLFPKLFKAWKITHLVFEKDTDA 108
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
RD ++ + E + V TLWD + +++ N P ++
Sbjct: 109 YARDRDAEIMRAAKEAGVEVIVRSGRTLWDSDELVKKNRGKPTMS 153
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 126 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
+G NR++FL++C D+ + + + +LF+++ +P ++F KL + T L FE+D +A
Sbjct: 49 VGTNRWQFLIDCQDDVSKSITKLNEKSKLFLMREAPQTLFPKLFKAWKITHLVFEKDTDA 108
Query: 184 Y 184
Y
Sbjct: 109 Y 109
>gi|330915233|ref|XP_003296949.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1]
gi|311330639|gb|EFQ94953.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1]
Length = 655
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NR+++LL+C DL + + + +LF+++ +P ++F KL + T L FE+D +A
Sbjct: 49 VGPNRWQYLLDCQNDLSKSITKLNPKSKLFVIREAPQTLFPKLFKAWKITHLVFEKDTDA 108
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+RD KV + + + V TL+DP+ ++ N P ++
Sbjct: 109 YARERDDKVLEIAKKAGVEVVVKTGRTLYDPDELVMQNHGKPTMS 153
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 107 PPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQ 164
P Y ++ + +G NR+++LL+C DL + + + +LF+++ +P ++F
Sbjct: 30 PTCLYPIWTWDPHYVYRARVGPNRWQYLLDCQNDLSKSITKLNPKSKLFVIREAPQTLFP 89
Query: 165 KLKRELNFTKLCFEQDCEAY 184
KL + T L FE+D +AY
Sbjct: 90 KLFKAWKITHLVFEKDTDAY 109
>gi|358368155|dbj|GAA84772.1| DNA photolyase [Aspergillus kawachii IFO 4308]
Length = 664
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 6 MHIGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+ +G NR+RFLLEC +DL + + + +L++V+ +P ++F KL + T L FE D
Sbjct: 51 VRVGPNRWRFLLECQSDLSQSYRKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDT 110
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+ +RD+ V K E + V TL+D + V++ N P ++
Sbjct: 111 DGYARERDETVIKLAKEAGVEVIVKSGRTLFDSDEVVKHNKGEPTMS 157
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 124 MHIGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ +G NR+RFLLEC +DL + + + +L++V+ +P ++F KL + T L FE D
Sbjct: 51 VRVGPNRWRFLLECQSDLSQSYRKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDT 110
Query: 182 EAY 184
+ Y
Sbjct: 111 DGY 113
>gi|348680511|gb|EGZ20327.1| hypothetical protein PHYSODRAFT_492233 [Phytophthora sojae]
Length = 650
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 55/117 (47%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P M G NRF+F+LE ++DL L + G +L + +G + + ++L T L F+
Sbjct: 131 PKIMLCGVNRFQFMLESVSDLADALAARGSRLVVARGDGLQVLRRLLPAWRITHLFFDAA 190
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
E RD + I +TL+D + VI N PP TY +L +++
Sbjct: 191 SEPFAIARDNRAVDLARHLGIQTHVTHGYTLYDLDAVIAGNEGEPPKTYTAFLRSLA 247
Score = 42.7 bits (99), Expect = 0.065, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN----VPPLTYKMYLHTVSCI 121
+W +RD ++ +N+ + E + + QT G+ +P L+ V
Sbjct: 84 MWFRRDLRL-----HDNLALSEALQLVKQQEGEMAQTTGHKVLFIP-------LYIVHRP 131
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
M G NRF+F+LE ++DL L + G +L + +G + + ++L T L F+
Sbjct: 132 KIMLCGVNRFQFMLESVSDLADALAARGSRLVVARGDGLQVLRRLLPAWRITHLFFDAAS 191
Query: 182 EAY 184
E +
Sbjct: 192 EPF 194
>gi|452989588|gb|EME89343.1| hypothetical protein MYCFIDRAFT_201892 [Pseudocercospora fijiensis
CIRAD86]
Length = 655
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NRF+FL++C D+ + + + +LF+++ +++ KL + + L FE+D +A
Sbjct: 49 VGANRFQFLIDCQNDVSKSITKLNKKSKLFVLREPAVTLLPKLFKAWKISHLVFEKDTDA 108
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+RD KV + + + V TL+DP+ +++ NG P ++
Sbjct: 109 YARERDAKVTEAAKKAGVEVIIKNGRTLFDPDDIVKANGGKPTMS 153
Score = 43.9 bits (102), Expect = 0.028, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 107 PPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQ 164
P + Y ++ + +G NRF+FL++C D+ + + + +LF+++ +++
Sbjct: 30 PEVLYPIWCWDSHYVYRARVGANRFQFLIDCQNDVSKSITKLNKKSKLFVLREPAVTLLP 89
Query: 165 KLKRELNFTKLCFEQDCEAY 184
KL + + L FE+D +AY
Sbjct: 90 KLFKAWKISHLVFEKDTDAY 109
>gi|340376121|ref|XP_003386582.1| PREDICTED: cryptochrome-2-like [Amphimedon queenslandica]
Length = 544
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 11 NRFRFLLECLADLDRQL--KSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
N +RFLLE L DLD +L + + +L I G P + L + N ++L F+ +L
Sbjct: 95 NVWRFLLESLHDLDSRLQKRPYNTRLNIYLGQPTVVLSALFHKWNVSELTFQASQTSLES 154
Query: 69 KRDKKVKKWCAEN-NITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
K+ ++ K+ A++ N+ F SHTL++PE +++ N P +YK + +G
Sbjct: 155 KKHDELIKFAADSQNVKTTSFYSHTLYNPEDILRANNGRFPHSYKELRRLLPLVG 209
>gi|302915963|ref|XP_003051792.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732731|gb|EEU46079.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 639
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 9 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
G NR++FLL+C DL + + + +L +++ +P ++F KL + T L FE+D ++
Sbjct: 50 GLNRWQFLLDCQNDLSKSITKLNPKSKLLLLREAPQTLFPKLFKAWKVTHLVFEKDTDSY 109
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+RD V + E + V TLWD + +++ +G P ++
Sbjct: 110 ARERDDVVTRAAKEAGVEVIVRTGRTLWDSDQIVEKHGGKPTMS 153
Score = 43.1 bits (100), Expect = 0.049, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 24/93 (25%)
Query: 94 WDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLK--SHGGQ 151
WDP V + G G NR++FLL+C DL + + + +
Sbjct: 39 WDPHYVYRARG----------------------GLNRWQFLLDCQNDLSKSITKLNPKSK 76
Query: 152 LFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
L +++ +P ++F KL + T L FE+D ++Y
Sbjct: 77 LLLLREAPQTLFPKLFKAWKVTHLVFEKDTDSY 109
>gi|408391364|gb|EKJ70743.1| hypothetical protein FPSE_09113 [Fusarium pseudograminearum CS3096]
Length = 637
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 9 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
G NR++FLL+C DL + + + +LF+++ +P ++F KL + T + FE+D ++
Sbjct: 50 GLNRWQFLLDCQNDLSKSITKVNPNSKLFVLREAPQTLFPKLFKAWEVTHIVFEKDTDSY 109
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+RD V + + + V TLWD + +++ +G P ++
Sbjct: 110 ARERDSIVTQAAKDAGVEVIIRSGRTLWDSDQIVEKHGGKPTMS 153
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 24/93 (25%)
Query: 94 WDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLK--SHGGQ 151
WDP V + G G NR++FLL+C DL + + + +
Sbjct: 39 WDPHYVYRARG----------------------GLNRWQFLLDCQNDLSKSITKVNPNSK 76
Query: 152 LFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
LF+++ +P ++F KL + T + FE+D ++Y
Sbjct: 77 LFVLREAPQTLFPKLFKAWEVTHIVFEKDTDSY 109
>gi|346324524|gb|EGX94121.1| cryptochrome-2 [Cordyceps militaris CM01]
Length = 902
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 9 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
G NR++FLL+C DL + + +LF+++ +P ++F K+ + T L FE+D +A
Sbjct: 50 GLNRWQFLLDCQNDLSTSITKLNSKSKLFLLREAPQTVFPKIFKAWGVTHLVFEKDTDAY 109
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+RD VK + + V TLWD + ++ N P ++
Sbjct: 110 PLERDAIVKAAAKDAGVKVITCSGRTLWDSDAIVAKNNGKPTMS 153
Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 24/93 (25%)
Query: 94 WDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLK--SHGGQ 151
WDP V + G G NR++FLL+C DL + + +
Sbjct: 39 WDPHYVYRARG----------------------GLNRWQFLLDCQNDLSTSITKLNSKSK 76
Query: 152 LFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
LF+++ +P ++F K+ + T L FE+D +AY
Sbjct: 77 LFLLREAPQTVFPKIFKAWGVTHLVFEKDTDAY 109
>gi|46124775|ref|XP_386941.1| hypothetical protein FG06765.1 [Gibberella zeae PH-1]
Length = 685
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 9 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
G NR++FLL+C DL + + + +LF+++ +P ++F KL + T + FE+D ++
Sbjct: 102 GLNRWQFLLDCQNDLSKSITKVNSNSKLFVLREAPQTLFPKLFKAWKVTHIVFEKDTDSY 161
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTM 124
+RD V + + + V TLWD + +++ +G P ++ S +G +
Sbjct: 162 ARERDSIVTQAAKDAGVEVIIRSGRTLWDSDQIVEKHGGKPTMSITQLQAAGSKLGQV 219
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 127 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
G NR++FLL+C DL + + + +LF+++ +P ++F KL + T + FE+D ++Y
Sbjct: 102 GLNRWQFLLDCQNDLSKSITKVNSNSKLFVLREAPQTLFPKLFKAWKVTHIVFEKDTDSY 161
>gi|350633368|gb|EHA21733.1| Hypothetical protein ASPNIDRAFT_184343 [Aspergillus niger ATCC
1015]
Length = 640
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 6 MHIGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+ +G NR+RFLLEC DL + + +L++V+ +P ++F KL + T L FE D
Sbjct: 50 VRVGPNRWRFLLECQKDLSQSYSKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDT 109
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+ +RD+ V K E + V TL+D + V++ N P ++
Sbjct: 110 DGYARERDETVTKLAKEAGVEVIVKSGRTLFDSDEVVKHNKGEPTMS 156
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 124 MHIGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ +G NR+RFLLEC DL + + +L++V+ +P ++F KL + T L FE D
Sbjct: 50 VRVGPNRWRFLLECQKDLSQSYSKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDT 109
Query: 182 EAY 184
+ Y
Sbjct: 110 DGY 112
>gi|443316924|ref|ZP_21046350.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 6406]
gi|442783454|gb|ELR93368.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 6406]
Length = 478
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 3 PGTMH---IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59
PG +H + R +L+ CLA L + + GG+L I+QGSP + L + + T L +
Sbjct: 39 PGILHRDDVAPVRVAYLMNCLAALQGRYAAAGGELLILQGSPAQVLPNLAQVIAVTALYW 98
Query: 60 EQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWD-----PEVVIQTNGN 105
+D E RD V C E I +K T WD P V+ G+
Sbjct: 99 NRDVEPYARDRDTHVAAACKEQGIEIKT----TFWDQLLCAPGAVLTGTGS 145
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
R +L+ CLA L + + GG+L I+QGSP + L + + T L + +D E Y
Sbjct: 51 RVAYLMNCLAALQGRYAAAGGELLILQGSPAQVLPNLAQVIAVTALYWNRDVEPY 105
>gi|449304579|gb|EMD00586.1| hypothetical protein BAUCODRAFT_175264 [Baudoinia compniacensis
UAMH 10762]
Length = 647
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKS--HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NR++FL++C+ D+ R + + +LF+++ +++ KL T + FE+D +A
Sbjct: 49 VGNNRWQFLIDCMNDVSRSITNLNPNSKLFVLREPAVTLLSKLFTAWRITHIVFEKDTDA 108
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMH 125
+RDK+V + + + V TLWD + +++ + P ++ S +G +
Sbjct: 109 YARERDKQVVESARKAGVEVIVKSGRTLWDSDDIVKAHNGKPTMSISQLQSAGSKVGDIA 168
Query: 126 I 126
+
Sbjct: 169 L 169
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 107 PPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQ 164
P + Y ++ + +G NR++FL++C+ D+ R + + +LF+++ +++
Sbjct: 30 PEVLYPIWCWDPHYVYHARVGNNRWQFLIDCMNDVSRSITNLNPNSKLFVLREPAVTLLS 89
Query: 165 KLKRELNFTKLCFEQDCEAY 184
KL T + FE+D +AY
Sbjct: 90 KLFTAWRITHIVFEKDTDAY 109
>gi|348680515|gb|EGZ20331.1| DNA photolyase cryptochrome [Phytophthora sojae]
Length = 708
Score = 59.3 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 53/113 (46%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P G RF+FLLE + DL + +K+ G+L +++G + + + T L FE
Sbjct: 164 PKHQRCGAVRFQFLLEAVEDLAKSIKNLQGRLLVLRGDADEVLRAVMTAWGITDLFFEAG 223
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
RD +V+ ++ V TL+DP +I+ NG PP Y+ L
Sbjct: 224 VMLYSVARDNRVRAVAETLDVKVTSIRGVTLYDPHEIIRLNGGQPPTDYERLL 276
>gi|443309426|ref|ZP_21039144.1| deoxyribodipyrimidine photolyase, partial [Synechocystis sp. PCC
7509]
gi|442780516|gb|ELR90691.1| deoxyribodipyrimidine photolyase, partial [Synechocystis sp. PCC
7509]
Length = 242
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 5/91 (5%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL----NFTKLCFEQDC 63
+G R RFL E L DLDR LKS G QL++++G+ +S+ Q L R+L + KL F QD
Sbjct: 44 VGKARVRFLFEALEDLDRNLKSRGSQLYLLEGNSLSVIQGLTRQLLQKGDRPKLFFNQDV 103
Query: 64 EALWH-KRDKKVKKWCAENNITVKEFVSHTL 93
+ + +RD ++ + ++N++ + +++ L
Sbjct: 104 QVQYGIERDLQIINYYKQHNLSYHQGLNNFL 134
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL----NFTKLCFEQDC 181
+G R RFL E L DLDR LKS G QL++++G+ +S+ Q L R+L + KL F QD
Sbjct: 44 VGKARVRFLFEALEDLDRNLKSRGSQLYLLEGNSLSVIQGLTRQLLQKGDRPKLFFNQDV 103
Query: 182 EA 183
+
Sbjct: 104 QV 105
>gi|302417194|ref|XP_003006428.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102]
gi|261354030|gb|EEY16458.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102]
Length = 626
Score = 59.3 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 9 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
G NR+++LL+C DL + + +LF+++ P ++F KL + T L FE+D ++
Sbjct: 50 GLNRWQYLLDCQNDLSASITKLNPKSKLFVLREGPQTLFPKLFKAWKVTHLVFEKDTDSY 109
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+RD V E + V TLWD + +++ NG P ++
Sbjct: 110 GRERDGVVVAAAREAGVEVIMRSGRTLWDSDDIVRANGGKPTMS 153
Score = 42.7 bits (99), Expect = 0.060, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 24/93 (25%)
Query: 94 WDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLK--SHGGQ 151
WDP V + G G NR+++LL+C DL + + +
Sbjct: 39 WDPHYVYRARG----------------------GLNRWQYLLDCQNDLSASITKLNPKSK 76
Query: 152 LFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
LF+++ P ++F KL + T L FE+D ++Y
Sbjct: 77 LFVLREGPQTLFPKLFKAWKVTHLVFEKDTDSY 109
>gi|358460135|ref|ZP_09170324.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. CN3]
gi|357076642|gb|EHI86112.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. CN3]
Length = 463
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
NR RFL+ECLADLDR L+ GG+L + +G P+ +L E+ ++ D A +R
Sbjct: 49 NRERFLVECLADLDRSLRGLGGRLVVREGDPVEQVCRLADEVGAARVHIAADASAYAQRR 108
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
++ AE +E SH D V+ G V P+
Sbjct: 109 QTTLRTALAERG---RELRSH---DEVHVVVAPGRVTPV 141
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
NR RFL+ECLADLDR L+ GG+L + +G P+ +L E+ ++ D AY
Sbjct: 49 NRERFLVECLADLDRSLRGLGGRLVVREGDPVEQVCRLADEVGAARVHIAADASAY 104
>gi|403373370|gb|EJY86604.1| Cryptochrome 5 [Oxytricha trifallax]
Length = 570
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 8 IGYNRFRFLLECLADLDRQL-KSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
+G NR +FL++ L DL++ L K + L I+ G P IF+KL E KL FE D E
Sbjct: 52 VGTNRMKFLIDSLIDLNKSLQKEYDSNLVILYGQPAEIFEKLAHESE--KLYFELDTEPY 109
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTL 93
RD+KV + C + + V HTL
Sbjct: 110 AQDRDRKVVQICEKAGVQVHRNTGHTL 136
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 126 IGYNRFRFLLECLADLDRQL-KSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR +FL++ L DL++ L K + L I+ G P IF+KL E KL FE D E Y
Sbjct: 52 VGTNRMKFLIDSLIDLNKSLQKEYDSNLVILYGQPAEIFEKLAHESE--KLYFELDTEPY 109
>gi|303283874|ref|XP_003061228.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457579|gb|EEH54878.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 559
Score = 58.9 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G NR RFLL+ L DLD L++ G L +++G P ++ R +L E D E
Sbjct: 52 VGANRVRFLLQSLTDLDASLRARGSSLLVLRGDPKAVVPAALRAWGCDRLTHEVDTEPYA 111
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVI-QTNGNVPPLTYKMYL 115
RD V+ VK F SHTL+D E ++ + PP +Y +L
Sbjct: 112 SARDAAVRDAAKRVGAEVKTFASHTLYDMERLLSKCPKGAPPTSYASFL 160
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR RFLL+ L DLD L++ G L +++G P ++ R +L E D E Y
Sbjct: 52 VGANRVRFLLQSLTDLDASLRARGSSLLVLRGDPKAVVPAALRAWGCDRLTHEVDTEPY 110
>gi|412988942|emb|CCO15533.1| predicted protein [Bathycoccus prasinos]
Length = 574
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 12/127 (9%)
Query: 8 IGYNRFRFLLECLADLDRQLKS---------HGGQLFIVQGSPISIFQKLKRELNFTKLC 58
+G NR FLL+ L +L+ L S L +VQG P + + ++ N + +
Sbjct: 59 VGANRMNFLLQSLTNLNENLGSLLSIENVNDANNCLTVVQGKPKDVLPNVIKKFNVSSVY 118
Query: 59 FEQD-CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQ--TNGNVPPLTYKMYL 115
FE++ E +RD+++ + C + N+ V + SHTL+D E ++ + +PP T +
Sbjct: 119 FEKEQVEPFGKQRDEEIIEMCKKLNVDVNTYASHTLYDQEFLLSKASAKGIPPSTMGAFQ 178
Query: 116 HTVSCIG 122
++ +G
Sbjct: 179 KVLANVG 185
>gi|358055721|dbj|GAA98066.1| hypothetical protein E5Q_04748 [Mixia osmundae IAM 14324]
Length = 601
Score = 58.9 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NR++FLLE ++D + + QLF+++G P +I L R+ + + +E+D +
Sbjct: 47 VGPNRWKFLLESMSDTSAAITKVNPKSQLFVLRGHPTTILPALLRKWKISDIVWEKDDDP 106
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTY 111
+RDK V+K + + V HTL+D E + P ++Y
Sbjct: 107 YTMERDKAVEKLAKDAGVKVHVVHGHTLYDAEAIEAKTKGKPYVSY 152
Score = 40.8 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 126 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
+G NR++FLLE ++D + + QLF+++G P +I L R+ + + +E+D +
Sbjct: 47 VGPNRWKFLLESMSDTSAAITKVNPKSQLFVLRGHPTTILPALLRKWKISDIVWEKDDDP 106
Query: 184 Y 184
Y
Sbjct: 107 Y 107
>gi|194673414|ref|XP_585942.4| PREDICTED: cryptochrome-2 [Bos taurus]
gi|296479702|tpg|DAA21817.1| TPA: cryptochrome 2-like [Bos taurus]
Length = 585
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 58/126 (46%), Gaps = 21/126 (16%)
Query: 2 FPGTMHIGYNRFRF--------LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 53
F + +G NR+R LL L R+L S GGQL P + E
Sbjct: 57 FAASSSVGINRWRMMKNEATQSLLRVLTLQWRKLAS-GGQL------PCHM------EWG 103
Query: 54 FTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKM 113
T+L FE D E +RD + K E + V SHTL+D + +I+ NG PPLTYK
Sbjct: 104 VTRLTFEYDSEPFGKERDTAIMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKR 163
Query: 114 YLHTVS 119
+ +S
Sbjct: 164 FQAIIS 169
>gi|348681082|gb|EGZ20898.1| DNA photolyase [Phytophthora sojae]
Length = 516
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P M G RF+F+LE + DL L+ G +L + +G + + ++L T L F+
Sbjct: 46 PQIMRCGARRFQFVLESVEDLADALEERGSRLVVAKGDGLQVLRRLLPAWGITHLYFDAV 105
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
E +RD + + + L++ + VI NG P TY+M+L V+
Sbjct: 106 SEPYAVERDNRALALAKSLGVQTHVTRGYELYNMDAVIAGNGGRAPKTYQMFLRAVA 162
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 115 LHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174
L+ V M G RF+F+LE + DL L+ G +L + +G + + ++L T
Sbjct: 40 LYIVHRPQIMRCGARRFQFVLESVEDLADALEERGSRLVVAKGDGLQVLRRLLPAWGITH 99
Query: 175 LCFEQDCEAY 184
L F+ E Y
Sbjct: 100 LYFDAVSEPY 109
>gi|425767796|gb|EKV06352.1| DNA photolyase, putative [Penicillium digitatum Pd1]
gi|425769478|gb|EKV07970.1| DNA photolyase, putative [Penicillium digitatum PHI26]
Length = 604
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NR++FLLEC +DL + +L +V+ P ++ KL T L FE+D +A
Sbjct: 54 VGPNRWKFLLECQSDLSTAYTKLNPKQKLHVVREGPQTVLPKLWEHWGVTHLVFEKDTDA 113
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
RD V + + + V + TL+DP+ V++ N P ++
Sbjct: 114 YARDRDNAVMRLAQKAGVEVIVKMGRTLFDPDDVVRKNNGKPTMS 158
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 126 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
+G NR++FLLEC +DL + +L +V+ P ++ KL T L FE+D +A
Sbjct: 54 VGPNRWKFLLECQSDLSTAYTKLNPKQKLHVVREGPQTVLPKLWEHWGVTHLVFEKDTDA 113
Query: 184 Y 184
Y
Sbjct: 114 Y 114
>gi|166366036|ref|YP_001658309.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
gi|166088409|dbj|BAG03117.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
Length = 485
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL + L+S GG L I +G P I +L +EL K+ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVADLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQ 103
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ A +K V K + + +K F + TL+ P+ + T +P L
Sbjct: 104 EVTAEELAVEKAVNKALSGVPVQIKTFWTATLYHPDDLPFTLNQLPEL 151
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
+ G G R +FLLE +ADL + L+S GG L I +G P I +L +EL K+ +
Sbjct: 43 TSYGFPKTGKFRAKFLLESVADLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYH 102
Query: 179 QDCEA 183
Q+ A
Sbjct: 103 QEVTA 107
>gi|425438643|ref|ZP_18818987.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9717]
gi|389719600|emb|CCH96584.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9717]
Length = 485
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL + L+S GG L I +G P I +L +EL K+ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVADLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQ 103
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ A +K V K + + +K F + TL+ P+ + T +P L
Sbjct: 104 EVTAEELAVEKAVNKALSGVPVQIKTFWTATLYHPDDLPFTLNQLPEL 151
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
+ G G R +FLLE +ADL + L+S GG L I +G P I +L +EL K+ +
Sbjct: 43 TSYGFPKTGKFRAKFLLESVADLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYH 102
Query: 179 QDCEA 183
Q+ A
Sbjct: 103 QEVTA 107
>gi|345570555|gb|EGX53376.1| hypothetical protein AOL_s00006g242 [Arthrobotrys oligospora ATCC
24927]
Length = 637
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 8 IGYNRFRFLLEC---LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
+G NR++FLL+C ++D QL S +L +++ SP++I KL + N + L FE+D +
Sbjct: 48 VGPNRWQFLLDCQSAVSDGLSQLNSKS-RLLVLRESPLTILPKLFKAWNISHLVFEKDTD 106
Query: 65 ALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+ KRD +V E + TLWD + ++ NG P +T
Sbjct: 107 SYARKRDDEVLAKAKEAGVQCIVKYGRTLWDSDDIVGINGG-PTMT 151
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 107 PPLTYKMYLHTVSCIGTMHIGYNRFRFLLEC---LADLDRQLKSHGGQLFIVQGSPISIF 163
P + Y ++ + +G NR++FLL+C ++D QL S +L +++ SP++I
Sbjct: 29 PDVFYPVWTWDPHYVYHAKVGPNRWQFLLDCQSAVSDGLSQLNSKS-RLLVLRESPLTIL 87
Query: 164 QKLKRELNFTKLCFEQDCEAY 184
KL + N + L FE+D ++Y
Sbjct: 88 PKLFKAWNISHLVFEKDTDSY 108
>gi|425466604|ref|ZP_18845902.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9809]
gi|389830841|emb|CCI26891.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9809]
Length = 485
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL + L+S GG L I +G P I +L +EL K+ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVADLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQ 103
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ A +K V K + + +K F + TL+ P+ + T +P L
Sbjct: 104 EVTAEELAVEKAVNKALSGVPVQIKTFWTATLYHPDDLPFTLNQLPEL 151
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
+ G G R +FLLE +ADL + L+S GG L I +G P I +L +EL K+ +
Sbjct: 43 TSYGFPKTGKFRAKFLLESVADLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYH 102
Query: 179 QDCEA 183
Q+ A
Sbjct: 103 QEVTA 107
>gi|172037341|ref|YP_001803842.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354553774|ref|ZP_08973080.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
gi|171698795|gb|ACB51776.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353554491|gb|EHC23881.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
Length = 476
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R ++L CL +L + GGQL I QG P I ++ + L + + D E
Sbjct: 47 IAPARVNYMLGCLRNLQESYQKLGGQLLIFQGQPTKIIPEVAKSLKVNCVIWNNDVEPYS 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RDK+VK+ E IT + + L P ++ + N P YK+Y
Sbjct: 107 KERDKQVKEALQEKGITSETYWDQLLHAPGEILTKSNNDP---YKVY 150
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
I R ++L CL +L + GGQL I QG P I ++ + L + + D E Y
Sbjct: 47 IAPARVNYMLGCLRNLQESYQKLGGQLLIFQGQPTKIIPEVAKSLKVNCVIWNNDVEPY 105
>gi|302864753|ref|YP_003833390.1| deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
27029]
gi|302567612|gb|ADL43814.1| Deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
27029]
Length = 440
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P + NR RFL + LADL L+ GG L I +G P++ KL R++ + D
Sbjct: 40 PALQKLSPNRTRFLHQSLADLREALRKRGGDLVIRRGDPVAETVKLARKVGAEGVGLSAD 99
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
H+R+++++ C + + ++ F T+ +P + G+
Sbjct: 100 VSRYAHRRERRLRAECDRHRMFLRLFPGLTIVEPGALRPGGGD 142
Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
NR RFL + LADL L+ GG L I +G P++ KL R++ + D Y
Sbjct: 48 NRTRFLHQSLADLREALRKRGGDLVIRRGDPVAETVKLARKVGAEGVGLSADVSRY 103
>gi|315501047|ref|YP_004079934.1| deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
gi|315407666|gb|ADU05783.1| Deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
Length = 440
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P + NR RFL + LADL L+ GG L I +G P++ KL R++ + D
Sbjct: 40 PALQKLSPNRTRFLHQSLADLREALRKRGGDLVIRRGDPVAETVKLARKVGAEGVGLSAD 99
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
H+R+++++ C + + ++ F T+ +P + G+
Sbjct: 100 VSRYAHRRERRLRAECDRHRMFLRLFPGLTIVEPGALRPGGGD 142
Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
NR RFL + LADL L+ GG L I +G P++ KL R++ + D Y
Sbjct: 48 NRTRFLHQSLADLREALRKRGGDLVIRRGDPVAETVKLARKVGAEGVGLSADVSRY 103
>gi|428779785|ref|YP_007171571.1| deoxyribodipyrimidine photolyase [Dactylococcopsis salina PCC 8305]
gi|428694064|gb|AFZ50214.1| deoxyribodipyrimidine photolyase [Dactylococcopsis salina PCC 8305]
Length = 476
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
+ R ++LL CL +L + G L I+ P++ L + LN T + + QD E
Sbjct: 45 QVAPARIKYLLGCLQELQENYRRVGSDLLILNADPVTAISNLAQTLNATGVFWNQDIEPY 104
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
KRD+ V+ E ITV+ F L P ++ T + P YK+Y
Sbjct: 105 SRKRDRAVQSALEEQGITVQTFWDQLLHSPGDIL-TKSDEP---YKVY 148
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 125 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+ R ++LL CL +L + G L I+ P++ L + LN T + + QD E Y
Sbjct: 45 QVAPARIKYLLGCLQELQENYRRVGSDLLILNADPVTAISNLAQTLNATGVFWNQDIEPY 104
>gi|271963152|ref|YP_003337348.1| deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
43021]
gi|270506327|gb|ACZ84605.1| Deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
43021]
Length = 425
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G +R FL E L DL L+ GG L + QG P++ +L REL + D AL
Sbjct: 42 GGHRAGFLAESLDDLRGSLRERGGDLVVRQGDPVAETLRLARELPAQAVYVSADVSALAQ 101
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+R++++ + C + + + F T+ P+ + + G
Sbjct: 102 RRERRLAEECERHRMEFRAFPGVTIVPPDALRPSGGG 138
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
G +R FL E L DL L+ GG L + QG P++ +L REL + D A
Sbjct: 42 GGHRAGFLAESLDDLRGSLRERGGDLVVRQGDPVAETLRLARELPAQAVYVSADVSA 98
>gi|403177785|ref|XP_003336224.2| hypothetical protein PGTG_17805 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173202|gb|EFP91805.2| hypothetical protein PGTG_17805 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 731
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGG--QLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NR++FLL+ + DL + + G +LF+++G P + R+ T L FE+D +
Sbjct: 143 VGPNRWQFLLDSMNDLSKSISRINGRSKLFVIRGEPSITLPYIWRQWGITHLAFEEDDDK 202
Query: 66 LWHK-RDKKVKKWCAENNITVKEFVSHTLWDPE-VVIQTNGNVPPLTYKMYLHTVSCIGT 123
+ RD+ + K + + + HTL+ E V+ GN+ P +Y+ +L + +G
Sbjct: 203 RHSQPRDQSIIKAAKDAGVEILTSPGHTLYPQEQVMAAAKGNL-PASYRGFLSAIEKLGP 261
Query: 124 MHIGYN 129
++
Sbjct: 262 PSPAHD 267
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGG--QLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
+G NR++FLL+ + DL + + G +LF+++G P + R+ T L FE+D
Sbjct: 143 VGPNRWQFLLDSMNDLSKSISRINGRSKLFVIRGEPSITLPYIWRQWGITHLAFEED 199
>gi|397603437|gb|EJK58421.1| hypothetical protein THAOC_21454 [Thalassiosira oceanica]
Length = 564
Score = 55.8 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD--CEALWH 68
NR RFLLEC DLD LK G +L++ G P+ + ++ ++ T + E D E
Sbjct: 58 NRARFLLECCQDLDESLKRCGSRLYVATGDPVEVLPEMWKKFGVTHMTHESDETGEPYAL 117
Query: 69 KRDKKVKKWCAENNITVKEFVSHTL 93
+RD V + + V +F S TL
Sbjct: 118 QRDTAVAAVAKDAGVEVIDFTSETL 142
Score = 49.7 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
NR RFLLEC DLD LK G +L++ G P+ + ++ ++ T + E D
Sbjct: 58 NRARFLLECCQDLDESLKRCGSRLYVATGDPVEVLPEMWKKFGVTHMTHESD 109
>gi|359073433|ref|XP_002693610.2| PREDICTED: cryptochrome-2 [Bos taurus]
Length = 591
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 39 GSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEV 98
G+ +I + +E T+L FE D E +RD + K E + V SHTL+D +
Sbjct: 95 GTGEAIMIPVVQEWGVTRLTFEYDSEPFGKERDTAIMKMAKEAGVEVVTENSHTLYDLDK 154
Query: 99 VIQTNGNVPPLTYKMYLHTVS 119
+I+ NG PPLTYK + +S
Sbjct: 155 IIELNGQKPPLTYKRFQAIIS 175
>gi|443309078|ref|ZP_21038849.1| deoxyribodipyrimidine photolyase, partial [Synechocystis sp. PCC
7509]
gi|442780877|gb|ELR90999.1| deoxyribodipyrimidine photolyase, partial [Synechocystis sp. PCC
7509]
Length = 282
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 12/109 (11%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL----NFTKL 57
F +G R RFL E L +LD L+S G QL++ +GS +S+ Q+L R+L + KL
Sbjct: 38 FYSQAEVGKARVRFLFESLENLDSNLRSRGSQLYLFEGSSVSVLQELTRQLLQKGDRPKL 97
Query: 58 CFEQDCEALWH-KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
F D +A + +RD+++ + E+++ + +++ L QT+G+
Sbjct: 98 FFNHDIQAQYGIERDRQIIDFYREHSLEYHQGLNNFL-------QTDGD 139
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL----NFTKLCFEQDC 181
+G R RFL E L +LD L+S G QL++ +GS +S+ Q+L R+L + KL F D
Sbjct: 44 VGKARVRFLFESLENLDSNLRSRGSQLYLFEGSSVSVLQELTRQLLQKGDRPKLFFNHDI 103
Query: 182 EA 183
+A
Sbjct: 104 QA 105
>gi|218437350|ref|YP_002375679.1| DASH family cryptochrome [Cyanothece sp. PCC 7424]
gi|218170078|gb|ACK68811.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424]
Length = 488
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL + L+ G L I QG P I ++ + LN T L + +
Sbjct: 50 FPKT---GKFRAQFLLESVADLRQSLQKLGSNLVIRQGLPELIIPQIAQPLNITALYYHE 106
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
+ A +K++KK A+ NI V+ F TL+ P+
Sbjct: 107 EVTAEELTVEKRLKKALAKCNIKVESFWGTTLYHPD 142
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 118 VSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177
+ G G R +FLLE +ADL + L+ G L I QG P I ++ + LN T L +
Sbjct: 45 TTSYGFPKTGKFRAQFLLESVADLRQSLQKLGSNLVIRQGLPELIIPQIAQPLNITALYY 104
Query: 178 EQDCEA 183
++ A
Sbjct: 105 HEEVTA 110
>gi|383775319|ref|YP_005459885.1| putative deoxyribodipyrimidine photolyase [Actinoplanes
missouriensis 431]
gi|381368551|dbj|BAL85369.1| putative deoxyribodipyrimidine photolyase [Actinoplanes
missouriensis 431]
Length = 443
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P + NR RFL +CLADL QL+ GG L + G P++ ++ RE + + D
Sbjct: 38 PTLAGLSGNRSRFLHQCLADLREQLRERGGDLVVRTGDPVAEAIRVAREHDAATIHLAAD 97
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+R++++ + I V+ T+ DP V+ G
Sbjct: 98 VSGYARRRERRLTDEGERHRIAVRLHPGVTVVDPGVLRPGGGG 140
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
NR RFL +CLADL QL+ GG L + G P++ ++ RE + + D Y
Sbjct: 46 NRSRFLHQCLADLREQLRERGGDLVVRTGDPVAEAIRVAREHDAATIHLAADVSGY 101
>gi|126658357|ref|ZP_01729506.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
gi|126620289|gb|EAZ91009.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
Length = 476
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R ++L CL L + + G QL I QG P I K+ LN + + D E
Sbjct: 47 IAPARVNYMLGCLQHLQKSYQKLGSQLLIFQGEPTKIIPKVADALNVDCVFWNNDVEPYS 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RDK+VK+ E +I K + L P ++ + N P YK+Y
Sbjct: 107 KERDKQVKEALEEKSIQSKTYWDQLLHAPGEILTKSNNDP---YKVY 150
Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
I R ++L CL L + + G QL I QG P I K+ LN + + D E Y
Sbjct: 47 IAPARVNYMLGCLQHLQKSYQKLGSQLLIFQGEPTKIIPKVADALNVDCVFWNNDVEPY 105
>gi|409123337|ref|ZP_11222732.1| deoxyribodipyrimidine photolyase [Gillisia sp. CBA3202]
Length = 432
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + L ++ ++L+S G L + G P +IF+ L + + K+ +D E +RD
Sbjct: 52 RLSFIFDTLQNIRKELQSSGSSLAMFFGKPAAIFKDLFDQYDVQKIFTNRDYEPYAKQRD 111
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
+K++K ++NN F +++ + V++++G+ P + Y Y+
Sbjct: 112 EKIEKLASDNNSEFLTFKDQVIFEKDEVVKSDGD-PYVVYTPYM 154
>gi|119484468|ref|ZP_01619085.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
gi|119457942|gb|EAW39065.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
Length = 479
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ R +++ CL +L +Q + G QL I+QG P S KL + L + + D E
Sbjct: 47 VAPARVTYMIGCLQELQKQYEKVGSQLLILQGQPSSAIPKLAKALEAKAVYWNLDVEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
RD++V + E NI V+ L P+ + + N P Y Y + S
Sbjct: 107 KDRDQQVSEALKEVNIGVETVWDQLLHTPDEIRTKSANEPYKVYTPYWNNWS 158
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+ R +++ CL +L +Q + G QL I+QG P S KL + L + + D E Y
Sbjct: 47 VAPARVTYMIGCLQELQKQYEKVGSQLLILQGQPSSAIPKLAKALEAKAVYWNLDVEPY 105
>gi|254412957|ref|ZP_05026729.1| cryptochrome, DASH family [Coleofasciculus chthonoplastes PCC 7420]
gi|196180121|gb|EDX75113.1| cryptochrome, DASH family [Coleofasciculus chthonoplastes PCC 7420]
Length = 488
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL ++S G L + +G P ++ L +EL+ T + F Q
Sbjct: 50 FPKT---GAFRAKFLLESVADLRENVRSRGSNLLVRRGLPENVIPTLAKELDITTVYFHQ 106
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
+ + + +K +E ITV+ F TL+ P+
Sbjct: 107 EVTSEEVAVESALKNALSEIGITVQTFWGSTLYHPD 142
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 115 LHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174
HT S G G R +FLLE +ADL ++S G L + +G P ++ L +EL+ T
Sbjct: 43 FHTTS-FGFPKTGAFRAKFLLESVADLRENVRSRGSNLLVRRGLPENVIPTLAKELDITT 101
Query: 175 LCFEQDCEA 183
+ F Q+ +
Sbjct: 102 VYFHQEVTS 110
>gi|385332709|ref|YP_005886660.1| deoxyribodipyrimidine photo-lyase [Marinobacter adhaerens HP15]
gi|311695859|gb|ADP98732.1| deoxyribodipyrimidine photo-lyase [Marinobacter adhaerens HP15]
Length = 538
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH-KRD 71
+ F+ + L DLDRQL+ G QL +++GS +KL+ ++ Q+ W +RD
Sbjct: 77 WAFIRDSLDDLDRQLRKAGSQLLVIRGSVTDALKKLQARQGIDRIFCHQETGGHWTFERD 136
Query: 72 KKVKKWCAENNITVKEF 88
+ V WC+EN + +E+
Sbjct: 137 RAVIGWCSENQVEFREW 153
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 131 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+ F+ + L DLDRQL+ G QL +++GS +KL+ ++ Q+ +
Sbjct: 77 WAFIRDSLDDLDRQLRKAGSQLLVIRGSVTDALKKLQARQGIDRIFCHQETGGH 130
>gi|428218359|ref|YP_007102824.1| deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
gi|427990141|gb|AFY70396.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
Length = 489
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G + F+L CL +L + G L G P + + + LN ++ F QD E
Sbjct: 59 GAGQVDFMLGCLQELQAAYQDLGSDLLFFHGDPAKTIRDIAQTLNAARVFFNQDVEPFAR 118
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD++ AE + VK F+ L P+ I TN P YK+Y
Sbjct: 119 ERDRQACAALAEIGVEVKSFLDLALHAPD-AISTNSGTP---YKVY 160
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 28/130 (21%)
Query: 61 QDCEALWHKRDKKVK------KWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
Q+ +WH+RD ++ + A+N T+ F+ +DP++ L K
Sbjct: 9 QNLTIVWHRRDLRIADNPALDQAIAQNGATIGIFI----FDPQI----------LESKAE 54
Query: 115 LHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174
T G + F+L CL +L + G L G P + + + LN +
Sbjct: 55 DQTT--------GAGQVDFMLGCLQELQAAYQDLGSDLLFFHGDPAKTIRDIAQTLNAAR 106
Query: 175 LCFEQDCEAY 184
+ F QD E +
Sbjct: 107 VFFNQDVEPF 116
>gi|392587897|gb|EIW77230.1| hypothetical protein CONPUDRAFT_129501 [Coniophora puteana
RWD-64-598 SS2]
Length = 658
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 8 IGYNRFRFLLECLADLDRQL--KSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+G NRF FLLE + DL L +S +L +V+ P L R+ T L +E+D
Sbjct: 50 VGVNRFNFLLESMHDLSAALTTRSPESRLLVVRAPPQMAIPALCRQWKITHLVYERDTAG 109
Query: 66 LWHKRDKK-VKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
RD + VK+ A V HTL+DP+ V+ N P ++
Sbjct: 110 YAAIRDSEVVKRVRALGGTEVLAVHGHTLYDPQRVVAANHGKPTMS 155
Score = 42.4 bits (98), Expect = 0.076, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 107 PPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQL--KSHGGQLFIVQGSPISIFQ 164
P + Y ++ + + +G NRF FLLE + DL L +S +L +V+ P
Sbjct: 31 PEVLYPVWTWDPEYVFSHRVGVNRFNFLLESMHDLSAALTTRSPESRLLVVRAPPQMAIP 90
Query: 165 KLKRELNFTKLCFEQDCEAY 184
L R+ T L +E+D Y
Sbjct: 91 ALCRQWKITHLVYERDTAGY 110
>gi|428776176|ref|YP_007167963.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
gi|428690455|gb|AFZ43749.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
Length = 477
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
+ R ++LL CL +L K G +L +Q P++ KL LN + + + D E
Sbjct: 46 QVAPARIKYLLGCLKELAAGYKKAGSELLFLQADPVTAIPKLAETLNASAVFWNHDVEPY 105
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWD-----PEVVIQTNGNVPPLTYKMY 114
KRD+ V+ NI V HT+WD P ++ T G P YK+Y
Sbjct: 106 GRKRDRAVQSALEAKNIPV-----HTVWDQLLHAPGEIL-TKGEDP---YKVY 149
Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 20/119 (16%)
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMH 125
WH+RD ++ ++NI + E H+ ++V ++ + +
Sbjct: 7 FWHRRDLRL-----DDNIGLNEAQQHS---NKIV------------GVFCFDPKLLQSDQ 46
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+ R ++LL CL +L K G +L +Q P++ KL LN + + + D E Y
Sbjct: 47 VAPARIKYLLGCLKELAAGYKKAGSELLFLQADPVTAIPKLAETLNASAVFWNHDVEPY 105
>gi|428201469|ref|YP_007080058.1| deoxyribodipyrimidine photolyase [Pleurocapsa sp. PCC 7327]
gi|427978901|gb|AFY76501.1| deoxyribodipyrimidine photolyase [Pleurocapsa sp. PCC 7327]
Length = 477
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +++ CL +L ++ G QL IVQG P L L + F D E
Sbjct: 47 IAPARITYMIGCLQELQQKYLQLGSQLLIVQGDPNQAITALAEALKVQAVFFNLDIEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNV 106
+RD+KVK+ E I V+ F L P ++ +GN+
Sbjct: 107 KQRDEKVKEALKEKGIAVETFWDQLLEAPGKIVTQSGNL 145
>gi|126735513|ref|ZP_01751258.1| putative deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
gi|126714700|gb|EBA11566.1| putative deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
Length = 505
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ Y ++RF +ADL +Q+ + GGQL + G+ + + +L+ + L Q+ W
Sbjct: 53 VSYRQWRFWAGAIADLQQQIATLGGQLCLRSGAVVDVLSQLRADYGPFDLVAHQETGNAW 112
Query: 68 H-KRDKKVKKWCAENNITVKEFVSHTLW 94
RD V+ WC N E H +W
Sbjct: 113 TFARDNAVRDWCHRNGADFTEHQQHGIW 140
>gi|358385715|gb|EHK23311.1| putative photolyase class 1 [Trichoderma virens Gv29-8]
Length = 627
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 9 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
G NR++FLL+C DL + + + +LF+++ P ++ KL + T L FE+D +A
Sbjct: 50 GVNRWQFLLDCQNDLSQSITKLNKNSKLFVLREGPQTLLPKLFKAWKPTHLVFEKDTDAY 109
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
RD+ V K + V TLWD + +++ +G P ++
Sbjct: 110 ARSRDEAVAKAAKAAGVEVIIRPGRTLWDSDDIVKHHGGKPTMS 153
Score = 43.9 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 24/93 (25%)
Query: 94 WDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLK--SHGGQ 151
WDP V + G G NR++FLL+C DL + + + +
Sbjct: 39 WDPHYVYKARG----------------------GVNRWQFLLDCQNDLSQSITKLNKNSK 76
Query: 152 LFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
LF+++ P ++ KL + T L FE+D +AY
Sbjct: 77 LFVLREGPQTLLPKLFKAWKPTHLVFEKDTDAY 109
>gi|298162590|gb|ADI59662.1| cryptochrome [Amphiprion melanopus]
Length = 308
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 47 KLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNV 106
+L +E +L +E D E +RD +KK +E + V +SHTL+D + +I+ NG
Sbjct: 2 RLFKEWKINRLSYEYDSEPFGKERDAAIKKLASEAGVEVTVRISHTLYDLDKIIELNGGQ 61
Query: 107 PPLTYKMYLHTVSCIGTMHI 126
PLTYK + +S + + +
Sbjct: 62 SPLTYKRFQTLISRMDAVEV 81
>gi|149376017|ref|ZP_01893783.1| deoxyribodipyrimidine photolyase family protein [Marinobacter
algicola DG893]
gi|149359654|gb|EDM48112.1| deoxyribodipyrimidine photolyase family protein [Marinobacter
algicola DG893]
Length = 507
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HKR 70
++ F+ +CL DLD+QLK G +L + G+ + +LK + ++ Q+ W + R
Sbjct: 49 QWAFIRDCLLDLDQQLKYAGNRLVVCNGAVTDVLNQLKANHDVQRVFCHQETGGQWTYDR 108
Query: 71 DKKVKKWCAENNITVKEF 88
D+ V WC ENN+ +E+
Sbjct: 109 DRSVIHWCTENNLEYREW 126
>gi|390440296|ref|ZP_10228639.1| Cryptochrome DASH [Microcystis sp. T1-4]
gi|389836306|emb|CCI32765.1| Cryptochrome DASH [Microcystis sp. T1-4]
Length = 485
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL + L+S GG L I +G P + +L +EL ++ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVADLRQSLESLGGNLIIRRGKPEELIPQLVQELQIARVYYHQ 103
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ A +K V K + + +K F + TL+ P+ + T +P L
Sbjct: 104 EVTAEELAVEKAVNKALSGFPVQIKTFWTATLYHPDDLPFTIHQLPEL 151
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
+ G G R +FLLE +ADL + L+S GG L I +G P + +L +EL ++ +
Sbjct: 43 TSYGFPKTGKFRAKFLLESVADLRQSLESLGGNLIIRRGKPEELIPQLVQELQIARVYYH 102
Query: 179 QDCEA 183
Q+ A
Sbjct: 103 QEVTA 107
>gi|358450917|ref|ZP_09161355.1| deoxyribodipyrimidine photo-lyase [Marinobacter manganoxydans
MnI7-9]
gi|357224893|gb|EHJ03420.1| deoxyribodipyrimidine photo-lyase [Marinobacter manganoxydans
MnI7-9]
Length = 505
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH-KRD 71
+ F+ + L DLDRQL+ G +L +++GS I ++L+ + ++ Q+ W +RD
Sbjct: 50 WAFIRDSLDDLDRQLRKAGSRLLVMRGSVIDTLKQLQARQDVKRVFCHQETGGHWTFERD 109
Query: 72 KKVKKWCAENNITVKEF 88
K V WC+EN + +E+
Sbjct: 110 KAVIGWCSENQVEFREW 126
>gi|378728105|gb|EHY54564.1| cryptochrome [Exophiala dermatitidis NIH/UT8656]
Length = 987
Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 11 NRFRFLLECLADLDRQLK--SHGGQLFIVQGS-PISIFQKLKRELNFTKLCFEQDCEALW 67
NR+RFLLE +ADL L + +L +V+G P I L R+ L FE+D +A
Sbjct: 100 NRWRFLLESMADLSASLARLNPNQKLHVVRGGPPAKIIPVLLRKWKINVLVFEKDTDAYA 159
Query: 68 HKRDKKVKKWCAENNITVKEFV-SHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHI 126
RD++V + + V TL+D + V++ NG P L+ ++ +G+
Sbjct: 160 RARDEQVTQLAEAMGVKVLCVPGGRTLFDSDDVVRANGGKPTLSMNQFMKAAGRLGSSSS 219
Query: 127 G 127
G
Sbjct: 220 G 220
Score = 39.7 bits (91), Expect = 0.52, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 129 NRFRFLLECLADLDRQLK--SHGGQLFIVQGS-PISIFQKLKRELNFTKLCFEQDCEAY 184
NR+RFLLE +ADL L + +L +V+G P I L R+ L FE+D +AY
Sbjct: 100 NRWRFLLESMADLSASLARLNPNQKLHVVRGGPPAKIIPVLLRKWKINVLVFEKDTDAY 158
>gi|392953097|ref|ZP_10318651.1| Deoxyribodipyrimidine photo-lyase [Hydrocarboniphaga effusa AP103]
gi|391858612|gb|EIT69141.1| Deoxyribodipyrimidine photo-lyase [Hydrocarboniphaga effusa AP103]
Length = 478
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G +L LA LD QL+ G QL I QG P++ ++L E + + +
Sbjct: 38 GAWTPGAASRWWLHHSLAALDAQLRESGAQLVIRQGDPLAQLRRLVGETGAEGVFWNRRY 97
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E W K D++V + E+ + + F ++ L +P ++T P Y + + +G
Sbjct: 98 EPAWVKSDRRVGEALIEDGVEAQAFAANLLVEP-WALKTGSGGPYRVYTPFSRSARALG 155
>gi|443661557|ref|ZP_21132734.1| cryptochrome DASH [Microcystis aeruginosa DIANCHI905]
gi|159029066|emb|CAO90052.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443332297|gb|ELS46914.1| cryptochrome DASH [Microcystis aeruginosa DIANCHI905]
Length = 485
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +A+L + L+ GG L I +G P I +L +EL ++ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVANLQQSLEGLGGNLIIRRGKPEEIIPQLVQELQIARVYYHQ 103
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ A +K V K + + +K F + TL+ P+ + T +P L
Sbjct: 104 EVTAEELAVEKAVNKALSGVPVQIKTFWTATLYHPDDLPFTVNQLPEL 151
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
+ G G R +FLLE +A+L + L+ GG L I +G P I +L +EL ++ +
Sbjct: 43 TSYGFPKTGKFRAKFLLESVANLQQSLEGLGGNLIIRRGKPEEIIPQLVQELQIARVYYH 102
Query: 179 QDCEA 183
Q+ A
Sbjct: 103 QEVTA 107
>gi|423065610|ref|ZP_17054400.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis C1]
gi|406713053|gb|EKD08228.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis C1]
Length = 474
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +++ CL L R + G QL I+Q +P +KL L + + QD E L
Sbjct: 47 IAPVRVAYMIGCLQCLQRDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD+ V++ E I V+ F L PE + G+ P YK+Y
Sbjct: 107 RQRDRSVEESLTEVGIKVETFWDQVLHSPEAIF--TGSKEP--YKVY 149
>gi|376004880|ref|ZP_09782483.1| deoxyribodipyrimidine photolyase, FAD-binding [Arthrospira sp. PCC
8005]
gi|375326730|emb|CCE18236.1| deoxyribodipyrimidine photolyase, FAD-binding [Arthrospira sp. PCC
8005]
Length = 474
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +++ CL L R + G QL I+Q +P +KL L + + QD E L
Sbjct: 47 IAPVRVAYMIGCLQCLQRDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD+ V++ E I V+ F L PE + G+ P YK+Y
Sbjct: 107 RQRDRSVEESLTEVGIKVETFWDQVLHSPEAIF--TGSKEP--YKVY 149
>gi|254421675|ref|ZP_05035393.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
gi|196189164|gb|EDX84128.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
Length = 550
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 19/138 (13%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R RF+L CLA LD L+S GG+L + G P+ + KL RE + D E ++
Sbjct: 46 GSGRVRFMLSCLAALDEDLRSRGGRLILRSGDPVEVLPKLVRETQSDGIYSYIDYERIYG 105
Query: 69 K-RDKKVKKWCAENNITVKEFVS-------------HTLW-----DPEVVIQTNGNVPPL 109
+ RD ++ + + V+ F LW P++ VPP
Sbjct: 106 RVRDARLNQALTREGLKVRWFEPLGGTPDLVPYPDYRQLWYQSVRSPQIPTPQKIEVPPD 165
Query: 110 TYKMYLHTVSCIGTMHIG 127
L ++ +G + G
Sbjct: 166 ISSDELPSLEAVGHISDG 183
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE 169
G R RF+L CLA LD L+S GG+L + G P+ + KL RE
Sbjct: 46 GSGRVRFMLSCLAALDEDLRSRGGRLILRSGDPVEVLPKLVRE 88
>gi|425471952|ref|ZP_18850803.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9701]
gi|389882102|emb|CCI37425.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9701]
Length = 485
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL + L++ GG L I +G P + +L +EL K+ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVADLRQSLENLGGNLIIRRGKPEELIPQLVQELQIAKVYYHQ 103
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ A +K V + + + +K F + TL+ P+ + T +P L
Sbjct: 104 EVTAEELAVEKAVNQALSGFPVQIKTFWTATLYHPDDLPFTLNQLPEL 151
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 118 VSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177
++ G G R +FLLE +ADL + L++ GG L I +G P + +L +EL K+ +
Sbjct: 42 LTSYGFPKTGKFRAKFLLESVADLRQSLENLGGNLIIRRGKPEELIPQLVQELQIAKVYY 101
Query: 178 EQDCEA 183
Q+ A
Sbjct: 102 HQEVTA 107
>gi|373954151|ref|ZP_09614111.1| cryptochrome, DASH family [Mucilaginibacter paludis DSM 18603]
gi|373890751|gb|EHQ26648.1| cryptochrome, DASH family [Mucilaginibacter paludis DSM 18603]
Length = 493
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT G R RFLLE +ADL + L+ HG +L + G P+ I +L E + +++ ++
Sbjct: 57 GTRKTGDFRTRFLLEAVADLRKTLQQHGAELIVRSGDPVDIIPQLAEEYHVSEVYHHREV 116
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
KV+ + + +K F+ HT + E
Sbjct: 117 AFEETDISAKVEAVLWKKKLNLKHFIGHTFYHKE 150
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 97 EVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ 156
E + + + +P + + ++ GT G R RFLLE +ADL + L+ HG +L +
Sbjct: 32 EALRKADKVLPVFCFDNFYFKITRYGTRKTGDFRTRFLLEAVADLRKTLQQHGAELIVRS 91
Query: 157 GSPISIFQKLKRELNFTKL 175
G P+ I +L E + +++
Sbjct: 92 GDPVDIIPQLAEEYHVSEV 110
>gi|209525318|ref|ZP_03273859.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
gi|209494169|gb|EDZ94483.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
Length = 474
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +++ CL L R + G QL I+Q +P +KL L + + QD E L
Sbjct: 47 IAPVRVAYMIGCLQCLQRDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLP 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD+ V++ E I V+ F L PE + G+ P YK+Y
Sbjct: 107 RQRDRSVEESLTEVGIKVETFWDQVLHSPEAIF--TGSKEP--YKVY 149
>gi|295134157|ref|YP_003584833.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87]
gi|294982172|gb|ADF52637.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87]
Length = 437
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 12 RFRFLLECLADLDRQLK-SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
R F+ E L D+ +L+ +H + + G P +F++L + + K+ +D E R
Sbjct: 53 RVTFIFETLQDMRNELQENHHSSIGMYHGKPEEVFKELLKNYSLGKVFTNRDYEPYAKDR 112
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT 117
D+K++K ENN+ + F +++ + V++ +G+ P + Y Y+ T
Sbjct: 113 DEKIQKLLDENNVKFETFKDQVIFEKDEVVKGDGD-PYVVYTPYMKT 158
>gi|443328462|ref|ZP_21057059.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
gi|442791916|gb|ELS01406.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
Length = 474
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R ++++ CL +L + G QL I QG+P + +L L+ + + D E
Sbjct: 47 IAPARVKYMMGCLQELSQSYGQIGSQLLITQGTPSQVIPQLASTLSAKAVYWNLDVEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
KRD++V + +ITV+ F L P V+ T P YK+Y
Sbjct: 107 RKRDREVTIALQDKDITVQNFWDQLLHPPGAVL-TQSEQP---YKVY 149
>gi|422304305|ref|ZP_16391652.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9806]
gi|389790612|emb|CCI13529.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9806]
Length = 485
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R +FLLE +ADL + L+S G L I +G P I +L +EL ++ + Q+ A
Sbjct: 51 GKFRAKFLLESVADLRQSLESLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEEL 110
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+K V K + + +K F + TL+ P+ + T +P L
Sbjct: 111 AVEKAVNKALSGFPVQIKTFWTATLYHPDDLPFTLNQLPEL 151
Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 118 VSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177
++ G G R +FLLE +ADL + L+S G L I +G P I +L +EL ++ +
Sbjct: 42 LTSYGFPKSGKFRAKFLLESVADLRQSLESLGSNLIIRRGKPEEIIPQLVQELQIARVYY 101
Query: 178 EQDCEA 183
Q+ A
Sbjct: 102 HQEVTA 107
>gi|113474888|ref|YP_720949.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110165936|gb|ABG50476.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 474
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +++ CL L ++ K G QL I+ G PI KL L + + D E
Sbjct: 47 IASARVTYMIGCLQHLQKRYKQIGSQLLIMSGKPIEAIPKLATFLEAKAVYWNLDVEPYS 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99
KRD++VK+ NI VK F L PE +
Sbjct: 107 RKRDRQVKENLEAANIQVKTFWEQLLHSPEEI 138
>gi|452949001|gb|EME54472.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis decaplanina DSM
44594]
Length = 449
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R FL CL LD QL GG+L +V+G P+ K RE+ + D
Sbjct: 48 GAPRVAFLHGCLKALDDQL---GGRLMLVKGDPVEEVVKAAREIGAATVHVSSDTGPYGR 104
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+RD +VKK AE++I E S P + + +G+
Sbjct: 105 RRDDEVKKALAEHDIAWVETGSSYAITPGRITKPDGD 141
>gi|400602563|gb|EJP70165.1| DNA photolyase [Beauveria bassiana ARSEF 2860]
Length = 623
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 9 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
G NR++FLL+C DL + + +LF+++ +P ++ K+ + T L FE+D ++
Sbjct: 50 GLNRWQFLLDCQNDLSASITKLNSKSKLFLLREAPQTVLPKIFKAWGVTHLVFEKDTDSY 109
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+RD V+ + V TLWD + ++ N P ++
Sbjct: 110 PRERDAAVEAAAKTAGVKVVTRSGRTLWDSDQIVAKNHGKPTMS 153
Score = 42.0 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 24/93 (25%)
Query: 94 WDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLK--SHGGQ 151
WDP V + G G NR++FLL+C DL + + +
Sbjct: 39 WDPHYVYRVRG----------------------GLNRWQFLLDCQNDLSASITKLNSKSK 76
Query: 152 LFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
LF+++ +P ++ K+ + T L FE+D ++Y
Sbjct: 77 LFLLREAPQTVLPKIFKAWGVTHLVFEKDTDSY 109
>gi|313217172|emb|CBY38333.1| unnamed protein product [Oikopleura dioica]
Length = 571
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD--CEALWHK 69
R++F+ L+DLD QLK+ G +L ++ G P +L + N +L F C + +
Sbjct: 118 RWKFIKSALSDLDEQLKNLGSRLHVLSGQPSERLPQLFADWNVVRLGFSAHPGCTDM-RR 176
Query: 70 RDKKVKKWCAENNI-TVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
RD+ + + + V L+ P +I+ +G +PPLT+ ++ S
Sbjct: 177 RDRAIVSLALRHGVEVVYRDAPQCLYSPRDIIKASGGMPPLTFPSFVGVAS 227
Score = 37.4 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177
R++F+ L+DLD QLK+ G +L ++ G P +L + N +L F
Sbjct: 118 RWKFIKSALSDLDEQLKNLGSRLHVLSGQPSERLPQLFADWNVVRLGF 165
>gi|425444341|ref|ZP_18824394.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9443]
gi|389730294|emb|CCI05405.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9443]
Length = 485
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +A+L + L+S G L I +G P I +L +EL K+ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVANLRQSLESLGSNLIIRRGKPEEIIPQLVQELQIAKVYYHQ 103
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ A +K V K + +K F + TL+ P+ + T +P L
Sbjct: 104 EVTAEELAVEKAVNKALSRVPAQIKTFWTATLYHPDDLPFTLNQLPEL 151
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 118 VSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177
++ G G R +FLLE +A+L + L+S G L I +G P I +L +EL K+ +
Sbjct: 42 LTSYGFPKTGKFRAKFLLESVANLRQSLESLGSNLIIRRGKPEEIIPQLVQELQIAKVYY 101
Query: 178 EQDCEA 183
Q+ A
Sbjct: 102 HQEVTA 107
>gi|260787134|ref|XP_002588610.1| hypothetical protein BRAFLDRAFT_131753 [Branchiostoma floridae]
gi|229273775|gb|EEN44621.1| hypothetical protein BRAFLDRAFT_131753 [Branchiostoma floridae]
Length = 521
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 40/58 (68%)
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
G N++RF++ECL DLD +L+++G +LF+ +G+ + F + R+ N T+L + + E Y
Sbjct: 113 GANQWRFVIECLQDLDTRLRAYGLRLFVARGNAEAFFAEHFRKWNITQLTHDVETEHY 170
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G N++RF++ECL DLD +L+++G +LF+ +G+ + F + R+ N T+L + + E
Sbjct: 113 GANQWRFVIECLQDLDTRLRAYGLRLFVARGNAEAFFAEHFRKWNITQLTHDVETEHYHR 172
Query: 69 KRD 71
RD
Sbjct: 173 FRD 175
>gi|443475122|ref|ZP_21065081.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
gi|443020045|gb|ELS34048.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
Length = 489
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
++ F+L CL +L + G L + G PI+ L + +N + L F QD E KR
Sbjct: 68 SKVDFMLGCLRELQTNYRRLGSDLLFMYGEPITSLCSLAKAINTSHLFFNQDVEPFAIKR 127
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
D++ + E + V+ FV L P+ + G YK+Y
Sbjct: 128 DREATQALQEIGVKVQSFVDIGLIAPDAIATQAGE----PYKVY 167
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMH 125
+WH+RD ++ ++N + E ++ + G V +++ +
Sbjct: 22 VWHRRDLRI-----DDNPALSEAIAQ--------VGDQGKV----LGLFIFDPDILDDGV 64
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
++ F+L CL +L + G L + G PI+ L + +N + L F QD E +
Sbjct: 65 TEGSKVDFMLGCLRELQTNYRRLGSDLLFMYGEPITSLCSLAKAINTSHLFFNQDVEPF 123
>gi|67921140|ref|ZP_00514659.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67857257|gb|EAM52497.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 518
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
++ R ++L CL DL + GGQL I QG+P I ++ L + + D E
Sbjct: 88 NVAPARITYMLGCLQDLRESYQQLGGQLLIFQGNPTQIIPQVADALKVDCVFWNNDVEPY 147
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
KRD +V + E I + + L P ++ + N P YK+Y
Sbjct: 148 SKKRDNQVIEALQERGIHSQTYWDQLLHAPGDILTKSNNAP---YKVY 192
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 112 KMYLHTVSCIGTM----------HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPIS 161
K Y H+ +G ++ R ++L CL DL + GGQL I QG+P
Sbjct: 65 KAYQHSSKLVGLFCLDTDILNQDNVAPARITYMLGCLQDLRESYQQLGGQLLIFQGNPTQ 124
Query: 162 IFQKLKRELNFTKLCFEQDCEAY 184
I ++ L + + D E Y
Sbjct: 125 IIPQVADALKVDCVFWNNDVEPY 147
>gi|372210250|ref|ZP_09498052.1| deoxyribodipyrimidine photo-lyase [Flavobacteriaceae bacterium S85]
Length = 428
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + LA +D++LK H L ++QG P ++Q+L ++ ++ +D E RD
Sbjct: 51 RVTFIYKALAAIDKELKKHQSSLLVLQGKPEEVWQQLFKDYQIQEVFTNKDYEPYALNRD 110
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+ + K E+ F +++ + +++ +GN P Y Y
Sbjct: 111 RAIYKLTKEHQAAFYRFKDQVIFEEKEIVKEDGN-PYTVYTPY 152
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 99 VIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGS 158
+Q++ V P+ ++ + + I R F+ + LA +D++LK H L ++QG
Sbjct: 24 ALQSSNPVLPI----FIFDEHILDELPIKDARVTFIYKALAAIDKELKKHQSSLLVLQGK 79
Query: 159 PISIFQKLKRELNFTKLCFEQDCEAY 184
P ++Q+L ++ ++ +D E Y
Sbjct: 80 PEEVWQQLFKDYQIQEVFTNKDYEPY 105
>gi|416411130|ref|ZP_11688696.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
gi|357260360|gb|EHJ09791.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
Length = 518
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
++ R ++L CL DL + GGQL I QG+P I ++ L + + D E
Sbjct: 88 NVAPARITYMLGCLQDLRESYQQLGGQLLIFQGNPTQIIPQVADALKVDCVFWNNDVEPY 147
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
KRD +V + E I + + L P ++ + N P YK+Y
Sbjct: 148 SKKRDNQVIEALQERGIHSQTYWDQLLHAPGDILTKSNNAP---YKVY 192
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 112 KMYLHTVSCIGTM----------HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPIS 161
K Y H+ +G ++ R ++L CL DL + GGQL I QG+P
Sbjct: 65 KAYQHSSKLVGLFCLDTDILNQDNVAPARITYMLGCLQDLRESYQQLGGQLLIFQGNPTQ 124
Query: 162 IFQKLKRELNFTKLCFEQDCEAY 184
I ++ L + + D E Y
Sbjct: 125 IIPQVADALKVDCVFWNNDVEPY 147
>gi|348029289|ref|YP_004871975.1| deoxyribodipyrimidine photolyase [Glaciecola nitratireducens
FR1064]
gi|347946632|gb|AEP29982.1| deoxyribodipyrimidine photolyase [Glaciecola nitratireducens
FR1064]
Length = 481
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H+ +RF+++ + DL+ QL + + I+ G+ + +F +L + ++ Q+ L
Sbjct: 40 HMDIRHWRFIVQSIKDLNEQLAEYNSSISILYGAALDVFSQLHEKYQIKQIVSHQEV-GL 98
Query: 67 WH--KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS----- 119
H RDK V WC N + E ++ P + T N P L + L + S
Sbjct: 99 THTYSRDKSVSNWCTNNKVDWTELAQGAVYRP---LNTRKNWPQLWNERILRSASQPELE 155
Query: 120 ---CIGTM 124
CI T+
Sbjct: 156 DIQCISTI 163
>gi|428774053|ref|YP_007165841.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium stanieri
PCC 7202]
gi|428688332|gb|AFZ48192.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium stanieri
PCC 7202]
Length = 476
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R ++L CL +L ++ + GG + + SP +I KL L + + +D E
Sbjct: 47 IAPARVTYMLGCLEELRKKYQERGGTFLVFKDSPQNIILKLAHNLKANSIYWNKDVEPYS 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT 117
RD+++ K E NI F + P V+ + N P Y + +
Sbjct: 107 RNRDRELAKTLKEKNINYHAFWDQLMHPPGDVLTKSNNTPYTVYGPFWRS 156
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
I R ++L CL +L ++ + GG + + SP +I KL L + + +D E Y
Sbjct: 47 IAPARVTYMLGCLEELRKKYQERGGTFLVFKDSPQNIILKLAHNLKANSIYWNKDVEPY 105
>gi|291570180|dbj|BAI92452.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
Length = 474
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R ++L CL L + G QL I+Q +P +KL L + + QD E L
Sbjct: 47 IAPVRVAYMLGCLQCLQEDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLP 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD+ V++ E I V+ F L PE + G+ P YK+Y
Sbjct: 107 RQRDRSVEESLTEVGIKVETFWDQVLHSPEAIF--TGSKEP--YKVY 149
>gi|448414324|ref|ZP_21577463.1| deoxyribodipyrimidine photolyase [Halosarcina pallida JCM 14848]
gi|445682617|gb|ELZ35034.1| deoxyribodipyrimidine photolyase [Halosarcina pallida JCM 14848]
Length = 468
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
H G R RF+L+ LA L Q + G L + +G P+ +L + ++ + QD
Sbjct: 39 AHAGAARVRFMLDALAGLREQYRERGSDLVVARGDPVEEIPRLAAAYDAERVVWNQDYSG 98
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLH 116
L RD V++ + + +E V + I TN P Y +Y +
Sbjct: 99 LARTRDAAVRRALDDAGVG-RESVHDAIHHQPGSITTNAGDP---YSVYTY 145
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
H G R RF+L+ LA L Q + G L + +G P+ +L + ++ + QD
Sbjct: 39 AHAGAARVRFMLDALAGLREQYRERGSDLVVARGDPVEEIPRLAAAYDAERVVWNQD 95
>gi|448448562|ref|ZP_21591293.1| deoxyribodipyrimidine photolyase [Halorubrum litoreum JCM 13561]
gi|445814578|gb|EMA64539.1| deoxyribodipyrimidine photolyase [Halorubrum litoreum JCM 13561]
Length = 518
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R R LL+ LA L + G L + +G P S+ +L L+ ++ + +D L
Sbjct: 46 HASDVRVRRLLDGLAALRDDYRERGSDLLVARGDPESVLPRLADALDAERVVWNRDYSGL 105
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD V++ ++ + L DP+ I+TN P Y Y
Sbjct: 106 ARERDAAVRRALDAVDVAREAHHDAVLHDPD-AIRTNAGDPYSVYSYY 152
>gi|448578594|ref|ZP_21644014.1| deoxyribodipyrimidine photolyase [Haloferax larsenii JCM 13917]
gi|445725772|gb|ELZ77392.1| deoxyribodipyrimidine photolyase [Haloferax larsenii JCM 13917]
Length = 478
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R R++L+ LA+L +S G L + +G P S+ + L+ ++ + D L
Sbjct: 40 HAGSPRVRYMLDALAELRASYRSRGSDLLVARGDPRSLVPAVADALDSDRVVWNVDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLH 116
+RD V+ E T +E V + P I TN P Y +Y +
Sbjct: 100 AKERDSDVRLALDEAG-TDRETVHDAIIFPPGSITTNAGDP---YSVYTY 145
>gi|333983407|ref|YP_004512617.1| deoxyribodipyrimidine photo-lyase [Methylomonas methanica MC09]
gi|333807448|gb|AEG00118.1| Deoxyribodipyrimidine photo-lyase [Methylomonas methanica MC09]
Length = 453
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDK 72
+F+LE L DL +Q ++H QL + QG P + +L RE F + +D +RD
Sbjct: 56 LQFMLEALQDLQQQFRTHQWQLGLYQGQPEQLVSRLHREQAFEAIFVNRDYTPFGRRRDA 115
Query: 73 KVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNV 106
++ +C + + L +PE ++++G+
Sbjct: 116 DLQTFCRKQGLAFYSCADTLLNEPEHGLKSDGSA 149
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 131 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
+F+LE L DL +Q ++H QL + QG P + +L RE F + +D
Sbjct: 56 LQFMLEALQDLQQQFRTHQWQLGLYQGQPEQLVSRLHREQAFEAIFVNRD 105
>gi|448424168|ref|ZP_21582294.1| deoxyribodipyrimidine photolyase [Halorubrum terrestre JCM 10247]
gi|445682833|gb|ELZ35246.1| deoxyribodipyrimidine photolyase [Halorubrum terrestre JCM 10247]
Length = 518
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R R LL+ LA L + G L + +G P S+ +L L+ ++ + +D L
Sbjct: 46 HASDVRVRRLLDGLAALRDDYRERGSDLLVARGDPESVLPRLADALDAERVVWNRDYSGL 105
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD V++ ++ + L DP+ I+TN P Y Y
Sbjct: 106 ARERDAAVRRALDAVDVAREAHHDAVLHDPD-AIRTNAGDPYSVYSYY 152
>gi|312194378|ref|YP_004014439.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c]
gi|311225714|gb|ADP78569.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c]
Length = 447
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R RFL E LADLDR L+ GG+L + G P+ ++ E++ + DC +R+
Sbjct: 49 RERFLAESLADLDRSLRELGGRLVVRAGDPVEQVCRVADEVDAGTVHLAADCSGYAQRRE 108
Query: 72 KKVKKWCAENNITV 85
++ AE T+
Sbjct: 109 AALRSALAERGRTL 122
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
R RFL E LADLDR L+ GG+L + G P+ ++ E++ + DC Y
Sbjct: 49 RERFLAESLADLDRSLRELGGRLVVRAGDPVEQVCRVADEVDAGTVHLAADCSGY 103
>gi|448435934|ref|ZP_21586950.1| deoxyribodipyrimidine photolyase [Halorubrum tebenquichense DSM
14210]
gi|445683094|gb|ELZ35497.1| deoxyribodipyrimidine photolyase [Halorubrum tebenquichense DSM
14210]
Length = 502
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R R LL+ LA L + G L + +G P ++ +L L+ ++ + +D L
Sbjct: 47 HASDVRVRRLLDGLAALRDDYRERGSDLLVARGDPATVLPRLADALDAERVVWNRDYSGL 106
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD V++ ++ + L DP+ I+TN P Y Y
Sbjct: 107 ARERDAGVRRALDAADVEREAHHDAILHDPD-AIRTNAGDPYSVYSYY 153
>gi|322698418|gb|EFY90188.1| cryptochrome-2 [Metarhizium acridum CQMa 102]
Length = 604
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G NR++FL + L+ + K LF+++ +P ++F KL + T L FE+D +A
Sbjct: 50 GTNRWQFL--SITKLNPKSK-----LFVLREAPQTLFPKLLKAWKVTHLVFEKDTDAYAR 102
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
+RD V K E + V TLWD + ++ + P ++ L +G
Sbjct: 103 QRDDVVAKAAKEAGVEVVIRSGRTLWDSDEIVAHHDGKPTMSMTQLLSAAKKVG 156
>gi|448479118|ref|ZP_21604042.1| deoxyribodipyrimidine photolyase [Halorubrum arcis JCM 13916]
gi|445822752|gb|EMA72515.1| deoxyribodipyrimidine photolyase [Halorubrum arcis JCM 13916]
Length = 519
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R R LL+ LA L + G L + +G P S+ +L L+ ++ + +D L
Sbjct: 46 HASDVRVRRLLDGLAALRDDYRERGSDLLVARGDPESLLPRLADALDAERVVWNRDYSGL 105
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD V++ ++ + L DP+ I+TN P Y Y
Sbjct: 106 ARERDAAVRRALDAVDVAREAHHDAVLHDPD-AIRTNAGDPYSVYSYY 152
>gi|448491509|ref|ZP_21608349.1| deoxyribodipyrimidine photolyase [Halorubrum californiensis DSM
19288]
gi|445692509|gb|ELZ44680.1| deoxyribodipyrimidine photolyase [Halorubrum californiensis DSM
19288]
Length = 515
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 3 PGTM-HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
PG + H R R LL+ LA L + G L + +G P ++ +L L+ ++ + +
Sbjct: 46 PGVLDHASDVRIRRLLDGLAALRDDYRERGSDLLVARGDPETVLPELAAALDAERVVWNR 105
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
D L +RD V++ ++ + L DP+ I+TN P Y Y
Sbjct: 106 DYSGLARERDAGVRRALDAVDVEREAHHDAVLHDPD-AIRTNAGDPYSVYSYY 157
>gi|425455819|ref|ZP_18835530.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9807]
gi|389803212|emb|CCI17833.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9807]
Length = 485
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL + L+S L I G P I +L +EL ++ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVADLRQSLESLDSNLIIRWGKPEEIIPQLVQELQIARVYYHQ 103
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ A +K V K + + +K F + TL+ P+ + T +P L
Sbjct: 104 EVTAEELAVEKAVNKALSRVPVQIKTFWTATLYHPDDLPFTLNQLPEL 151
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 118 VSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177
++ G G R +FLLE +ADL + L+S L I G P I +L +EL ++ +
Sbjct: 42 LTSYGFPKTGKFRAKFLLESVADLRQSLESLDSNLIIRWGKPEEIIPQLVQELQIARVYY 101
Query: 178 EQDCEA 183
Q+ A
Sbjct: 102 HQEVTA 107
>gi|62910844|gb|AAY21157.1| deoxyribopyrimidine photolyase [Prochloron didemni]
Length = 475
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
+ R ++L CL +L G QL IV+G PI +L L T + + +D E
Sbjct: 46 EVAPARVTYMLGCLQELKESYSKIGSQLLIVRGEPIEAIPQLAVALQVTGVFWHKDGEPY 105
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+RD KV++ + I V + L PE ++ +G
Sbjct: 106 ARERDGKVEQELLKQGIAVTNYWDQLLHPPEDILTQSG 143
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
+ + + + R ++L CL +L G QL IV+G PI +L L T + +
Sbjct: 40 NILNSNEVAPARVTYMLGCLQELKESYSKIGSQLLIVRGEPIEAIPQLAVALQVTGVFWH 99
Query: 179 QDCEAY 184
+D E Y
Sbjct: 100 KDGEPY 105
>gi|354611090|ref|ZP_09029046.1| Deoxyribodipyrimidine photo-lyase [Halobacterium sp. DL1]
gi|353195910|gb|EHB61412.1| Deoxyribodipyrimidine photo-lyase [Halobacterium sp. DL1]
Length = 467
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H +R F+L+ LA L + + GG L + G P ++ L RE ++ + D L
Sbjct: 40 HAAPSRMAFMLDALAALRERYRELGGDLLVRHGDPSAVLPDLAREFGADRVVWNHDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLH 116
+RD+ V+ ++ T E V + I+TN P Y +Y +
Sbjct: 100 ARERDEAVRA-ALDDQGTAHEQVHDAVLHEPGAIRTNAGDP---YSVYTY 145
>gi|448502804|ref|ZP_21612753.1| deoxyribodipyrimidine photolyase [Halorubrum coriense DSM 10284]
gi|445693867|gb|ELZ46008.1| deoxyribodipyrimidine photolyase [Halorubrum coriense DSM 10284]
Length = 511
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R R LL+ LA L + G L + +G P ++ +L L+ ++ + +D L
Sbjct: 47 HASDVRVRRLLDGLAALRDDYRERGSDLLVARGDPEAVLPRLAEALDAERVVWNRDYSGL 106
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD V++ ++ + L DP+ I+TN P Y Y
Sbjct: 107 ARERDAGVRRALDAVDVAREAHHDAVLHDPD-AIRTNAGDPYSVYSYY 153
>gi|347754095|ref|YP_004861659.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
gi|347586613|gb|AEP11143.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
Length = 475
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R FLLE L +LD L++ G +L + +G P + +L E + + F +D E
Sbjct: 48 GAVRVAFLLESLRNLDENLRARGSRLLLRRGRPEHVLAQLVTETAASAVYFNRDVEPFAL 107
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
RD +V+ E V+ F L PE V +T P + Y V
Sbjct: 108 ARDARVRA-HLEGRCAVEGFDDGGLTAPEAV-RTKAGTPYTVFTPYRQAV 155
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 113 MYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 172
+++ + + G R FLLE L +LD L++ G +L + +G P + +L E
Sbjct: 34 VFIFDDAILSRPDTGAVRVAFLLESLRNLDENLRARGSRLLLRRGRPEHVLAQLVTETAA 93
Query: 173 TKLCFEQDCEAY 184
+ + F +D E +
Sbjct: 94 SAVYFNRDVEPF 105
>gi|42523667|ref|NP_969047.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus HD100]
gi|39575874|emb|CAE80040.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus HD100]
Length = 435
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ E + D+ +QL + L + G P+ + + L E+ + D E KRD
Sbjct: 52 RVTFIYEQIQDMKQQLNAKKSDLIVRHGKPLEVLKTLSDEMAVEAIYANHDYEPAARKRD 111
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
+KV W A+ I F L++ + ++ T+ P Y Y + V
Sbjct: 112 EKVAAWAAKAGIEFLTFKDQCLFEKDEIL-TDARKPYTVYTPYRNKV 157
>gi|313231151|emb|CBY19149.1| unnamed protein product [Oikopleura dioica]
Length = 187
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 14 RFLLECLADLDRQLKSH-GGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDK 72
+F+ E L DL RQLK G+L + G + +K+K +NF+ + + +D +RD
Sbjct: 73 QFMCESLNDLGRQLKEEVDGKLHLFMGGNLETIKKIKEVVNFSAIAYNEDYSVYARERDG 132
Query: 73 KVKKWCAENNITV 85
++++W NN+ +
Sbjct: 133 EIEEWAESNNVEI 145
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 132 RFLLECLADLDRQLKSH-GGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+F+ E L DL RQLK G+L + G + +K+K +NF+ + + +D Y
Sbjct: 73 QFMCESLNDLGRQLKEEVDGKLHLFMGGNLETIKKIKEVVNFSAIAYNEDYSVY 126
>gi|313242055|emb|CBY34235.1| unnamed protein product [Oikopleura dioica]
Length = 539
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 14 RFLLECLADLDRQLKSH-GGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDK 72
+F+ E L DL RQLK G+L + G + +K+K +NF+ + + +D +RD
Sbjct: 108 QFMCESLNDLGRQLKEEVDGKLHLFMGGNLETIKKIKEVVNFSAIAYNEDYSVYARERDG 167
Query: 73 KVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKM 113
++++W NN+ + + + L + + PP Y++
Sbjct: 168 EIEEWAESNNVEIIKEEDYGLLPIKDAWHHPKDGPPKPYRV 208
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 132 RFLLECLADLDRQLKSH-GGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+F+ E L DL RQLK G+L + G + +K+K +NF+ + + +D Y
Sbjct: 108 QFMCESLNDLGRQLKEEVDGKLHLFMGGNLETIKKIKEVVNFSAIAYNEDYSVY 161
>gi|409989683|ref|ZP_11273203.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
gi|409939453|gb|EKN80597.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
Length = 474
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R ++L CL L + G QL I+Q +P +KL L + + +D E L
Sbjct: 47 IAPVRVAYMLGCLQCLQEDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAIYWNRDVEPLP 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD+ V++ E I V+ F L PE + G+ P YK+Y
Sbjct: 107 RQRDRSVEESLTEVGIKVETFWDQVLHSPEAIF--TGSKEP--YKVY 149
>gi|301097555|ref|XP_002897872.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262106620|gb|EEY64672.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 694
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 48/113 (42%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P G RF+FLLE + DL R + G+L ++ G + + + T L FE
Sbjct: 144 PKRQRCGPVRFQFLLEAIEDLARSIAKLDGRLLVLSGDAEEVLRTVIAAWGVTDLFFEAG 203
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
RD +V+ ++ V TL++P +I+ N P Y+ L
Sbjct: 204 VAHYAVDRDNRVRAIAKSLDVNVTTIRGVTLYNPHEIIRLNSGQAPTDYERLL 256
>gi|399576486|ref|ZP_10770241.1| deoxyribodipyrimidine photo-lyase type i [Halogranum salarium B-1]
gi|399237930|gb|EJN58859.1| deoxyribodipyrimidine photo-lyase type i [Halogranum salarium B-1]
Length = 489
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R RF+L+ LA+L + HG L + G P + +L E + ++ + +D L
Sbjct: 40 HAASPRVRFMLDALAELRAWYRDHGSDLLVAHGDPKEVLPELADEYDADRVVWNKDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
RD V++ E + ++ V + I TN P Y +
Sbjct: 100 ARHRDAAVRRALDEAGVG-RDVVHDAIHHEPGSITTNDGEPYAVYTYF 146
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 125 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
H R RF+L+ LA+L + HG L + G P + +L E + ++ + +D
Sbjct: 40 HAASPRVRFMLDALAELRAWYRDHGSDLLVAHGDPKEVLPELADEYDADRVVWNKD 95
>gi|260436423|ref|ZP_05790393.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
gi|260414297|gb|EEX07593.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
Length = 477
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FL+E L +L ++ + G +L +V+G P+++ +L +++ + + +D E +RD
Sbjct: 56 RLWFLIESLVELQQRWREAGSRLLVVKGDPVAVLPQLAQQIGAEAVVWSRDVEPYARERD 115
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT 117
++V K + V L PE +++T G P Y +L
Sbjct: 116 RQVAKKLQADGRKVVVDWDQLLIAPE-LLKTGGGDPYRVYGPFLRN 160
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 22/121 (18%)
Query: 67 WHKRDKKVKK---WCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGT 123
WH+RD ++ A +I+ + L DP+++ T ++PP+
Sbjct: 9 WHRRDLRLADNLGLVAATDISPAVTGVYVL-DPQLINPTE-HLPPMAPA----------- 55
Query: 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
R FL+E L +L ++ + G +L +V+G P+++ +L +++ + + +D E
Sbjct: 56 ------RLWFLIESLVELQQRWREAGSRLLVVKGDPVAVLPQLAQQIGAEAVVWSRDVEP 109
Query: 184 Y 184
Y
Sbjct: 110 Y 110
>gi|86137240|ref|ZP_01055818.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. MED193]
gi|85826564|gb|EAQ46761.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. MED193]
Length = 502
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH-KRDKK 73
F+ E LA+L LK G L + QGS + I + L R+ + L ++ W +RD +
Sbjct: 50 FVAETLAELRDDLKLRGQPLVVRQGSVVEILEGLMRQGRLSALWSHEESGNGWTFQRDCR 109
Query: 74 VKKWCAENNITVKEFVSHTLW 94
V WC +N I E +H +W
Sbjct: 110 VAAWCRDNGIPWHELQNHGVW 130
>gi|363582222|ref|ZP_09315032.1| deoxyribodipyrimidine photo-lyase [Flavobacteriaceae bacterium
HQM9]
Length = 433
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + LAD+ +LK + I G PI+IFQ+++++ TK+ D E +RD
Sbjct: 51 RVSFIHDSLADMHSKLKEMNKGISIFHGEPIAIFQEIEKKYKVTKVYTNHDYEPYALERD 110
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
K + + E I + + ++ + +++ +G+ P + Y Y
Sbjct: 111 KILTAFFEEKAIKFETYKDQVYFEKDEIVKADGD-PYMVYTPY 152
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 99 VIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGS 158
+ N NV P+ ++ +G + R F+ + LAD+ +LK + I G
Sbjct: 24 ALSENKNVLPI----FIFDTEILGKLPENDARVSFIHDSLADMHSKLKEMNKGISIFHGE 79
Query: 159 PISIFQKLKRELNFTKLCFEQDCEAY 184
PI+IFQ+++++ TK+ D E Y
Sbjct: 80 PIAIFQEIEKKYKVTKVYTNHDYEPY 105
>gi|428220832|ref|YP_007105002.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
gi|427994172|gb|AFY72867.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
Length = 481
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G + F+L CL +L + + G +L G+P + KL + L +L F QD E
Sbjct: 49 GGGKVDFMLGCLKELQQSYRELGSELLCFYGNPKEVLAKLAQVLKPQRLFFNQDVEPSAI 108
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
KRD+ V + + I VK F+ L P+ + + P YK+Y
Sbjct: 109 KRDQAVIQELSAIGIEVKGFLDIALHAPQAIATKSTGEP---YKVY 151
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 25/120 (20%)
Query: 66 LWHKRDKKVKKWCAENNITV---KEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
+WH+RD +++ A V E V ++DP++ +
Sbjct: 7 VWHRRDLRLQDNPALAKAAVIPNSETVGIFIFDPDI----------------------LK 44
Query: 123 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
+ G + F+L CL +L + + G +L G+P + KL + L +L F QD E
Sbjct: 45 SPETGGGKVDFMLGCLKELQQSYRELGSELLCFYGNPKEVLAKLAQVLKPQRLFFNQDVE 104
>gi|48478134|ref|YP_023840.1| deoxyribodipyrimidine photolyase [Picrophilus torridus DSM 9790]
gi|48430782|gb|AAT43647.1| deoxyribodipyrimidine photolyase [Picrophilus torridus DSM 9790]
Length = 431
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
F++ L DL ++ + G+L + G P+ + ++L N ++ +D KRD+++
Sbjct: 50 FMISSLYDLMTDIEGNHGKLAVFHGDPVDVLKRLVNRENINEIYINRDYTPFSIKRDERI 109
Query: 75 KKWCAENNITVKEFVSHTLWDPEV 98
K++ +NNI + L DPE+
Sbjct: 110 KEFSIKNNIKFNALDDYFLSDPEL 133
>gi|406908204|gb|EKD48781.1| hypothetical protein ACD_64C00134G0005 [uncultured bacterium]
Length = 465
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
N +F+LE L DL++Q+K G+L++ G P+ + + L D KR
Sbjct: 56 NALQFMLESLHDLEQQIKKQKGKLYLFYGDPLKTISHIILQEKIDALFLNFDYTPFSQKR 115
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
DK ++K C + N+ + L I T N P Y +
Sbjct: 116 DKAIEKLCVKKNVAFHGYHDELLIGDPDSIMTGSNTPYSIYTAF 159
>gi|260062651|ref|YP_003195731.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata
HTCC2501]
gi|88784218|gb|EAR15388.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata
HTCC2501]
Length = 434
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 12 RFRFLLECLADL-DRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
R FL + L +L R ++ G L I G P+ IF++L + + ++ +D E R
Sbjct: 52 RVTFLHDRLQELRSRMQENQGSSLAIYHGKPLEIFKELASDWDVGQVFTNRDYEPYARDR 111
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
D++V +W +E I F +++ + V++ +G+ P + Y Y+
Sbjct: 112 DEQVGQWLSEQGIEFHTFKDQVIFEKDEVVKDDGD-PYVVYTPYM 155
>gi|448529029|ref|ZP_21620344.1| deoxyribodipyrimidine photolyase [Halorubrum hochstenium ATCC
700873]
gi|445709735|gb|ELZ61559.1| deoxyribodipyrimidine photolyase [Halorubrum hochstenium ATCC
700873]
Length = 502
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R R LL+ LA L + G L + +G P ++ +L L+ ++ + +D L
Sbjct: 47 HASDVRVRRLLDGLAALRDDYRERGSDLLVARGDPENVLPRLAEALDAERVVWNRDYSGL 106
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD V++ ++ + L DP+ I+TN P Y Y
Sbjct: 107 ARERDAGVRRALDAVDVEREAHQDAVLHDPD-AIRTNAGDPYSVYSYY 153
>gi|334143259|ref|YP_004536415.1| DNA photolyase FAD-binding protein [Thioalkalimicrobium cyclicum
ALM1]
gi|333964170|gb|AEG30936.1| DNA photolyase FAD-binding protein [Thioalkalimicrobium cyclicum
ALM1]
Length = 527
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH-K 69
++RF+ +CL DLD L+S G L G ++F +L+++ + + + Q+ W +
Sbjct: 63 RQWRFVADCLVDLDADLRSLGQGLMFAIGEVETVFSQLRQQYHISAVWSHQETGNGWTFQ 122
Query: 70 RDKKVKKWCAENNITVKEFVSHTL 93
RD+++K W E I E H +
Sbjct: 123 RDRRLKHWLNEQQIAWYELAQHPI 146
>gi|148241324|ref|YP_001226481.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
gi|147849634|emb|CAK27128.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
Length = 467
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FLLE L +L ++ + G QL +++G+P+ + +L ++L + + +D E L +RD
Sbjct: 50 RRWFLLESLRELQQRWRQAGSQLLLLEGNPVELLPRLAQQLGAAGVAWNRDVEPLVRQRD 109
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT 117
+++ + V L PE ++T G P Y Y +
Sbjct: 110 RELAAALKAIGVRVAADWDQLLVPPE-QLKTGGGDPYRVYGPYWRS 154
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
R FLLE L +L ++ + G QL +++G+P+ + +L ++L + + +D E
Sbjct: 50 RRWFLLESLRELQQRWRQAGSQLLLLEGNPVELLPRLAQQLGAAGVAWNRDVE 102
>gi|78211765|ref|YP_380544.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605]
gi|78196224|gb|ABB33989.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605]
Length = 477
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FL+E L +L ++ + G +L +V+G P+++ ++ ++++ + + +D E KRD
Sbjct: 56 RLWFLIESLVELQQRWREAGSRLLVVEGDPVAVLPQVAQQISAEAVVWNRDVEPYARKRD 115
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT 117
++V K + V L PE +++T P Y +L
Sbjct: 116 RQVAKTLQADGRRVVADWDQLLIAPE-LLKTGAGDPYRVYGPFLRN 160
Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 34/55 (61%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
R FL+E L +L ++ + G +L +V+G P+++ ++ ++++ + + +D E Y
Sbjct: 56 RLWFLIESLVELQQRWREAGSRLLVVEGDPVAVLPQVAQQISAEAVVWNRDVEPY 110
>gi|300710895|ref|YP_003736709.1| deoxyribodipyrimidine photo-lyase [Halalkalicoccus jeotgali B3]
gi|448297012|ref|ZP_21487062.1| deoxyribodipyrimidine photolyase [Halalkalicoccus jeotgali B3]
gi|299124578|gb|ADJ14917.1| deoxyribodipyrimidine photo-lyase [Halalkalicoccus jeotgali B3]
gi|445580689|gb|ELY35067.1| deoxyribodipyrimidine photolyase [Halalkalicoccus jeotgali B3]
Length = 459
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R F+L+ L L + GG L I +G P ++ L E + + D L
Sbjct: 36 HAAPPRVAFMLDALESLREAYRERGGNLLIERGDPSAVVPTLAAEFGVDTVVWNHDYSGL 95
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+RD+ V+ E I +++ + +P + T+G+
Sbjct: 96 ARERDEAVRAALDERGINHEQYHDAVIHEPGSITTTDGD 134
>gi|385333942|ref|YP_005887891.1| deoxyribodipyrimidine photolyase [Marinobacter adhaerens HP15]
gi|311697144|gb|ADQ00016.1| deoxyribodipyrimidine photolyase [Marinobacter adhaerens HP15]
Length = 505
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC-EALWHKRDKK 73
F+ E L +L ++++S GG+L + G + + + ++C Q+ + + ++RDK
Sbjct: 54 FIFETLDELSQEIRSIGGKLLELVGEAVPTLDVIHQIAPIARICTHQETTQGVQYERDKA 113
Query: 74 VKKWCAENNITVKEF 88
V+KWC+ N++ + EF
Sbjct: 114 VRKWCSRNSVKLVEF 128
>gi|91774219|ref|YP_566911.1| deoxyribodipyrimidine photo-lyase type I [Methanococcoides burtonii
DSM 6242]
gi|91713234|gb|ABE53161.1| Deoxyribodipyrimidine photolyase [Methanococcoides burtonii DSM
6242]
Length = 467
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 22/186 (11%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P N +FLLE L DL QL+ G+L++ G P + +L L + D
Sbjct: 47 PKGKAFNSNALQFLLESLYDLKGQLEKVNGRLYLFSGLPEGVIGQLLENLEIDAVFVNHD 106
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS--- 119
KRD ++ C + + + +F L +P I+T P + + S
Sbjct: 107 YTPFSIKRDMQIASICTDKGVDMLQFHDCLLHEPG-SIRTKKGTPYKVFTQFFREASKRD 165
Query: 120 -CIGTMHIGYNRF------------RFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 166
+ +M G + F FL L + + Q+ HGG + + +S+ Q L
Sbjct: 166 VAVPSMFSGGSFFTGDCGVDEVDEGSFLKRSLPERNEQIFVHGG-----RANGLSVLQSL 220
Query: 167 KRELNF 172
+ +N+
Sbjct: 221 SQFVNY 226
>gi|149372178|ref|ZP_01891448.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium
SCB49]
gi|149354945|gb|EDM43507.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium
SCB49]
Length = 435
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ L + L+ G L + QG P+ I+++L ++ + + D E RD
Sbjct: 52 RVTFIFNTLQKMRDALQEKGSSLAMYQGKPLDIYKQLIKDFDVQNVITNHDYEVYAQDRD 111
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+++K + A+ +I F +++ V++ NG+ P + Y Y
Sbjct: 112 EEIKTFLAQKDIDFYTFKDQVIFEKNEVVKDNGD-PYVVYTPY 153
>gi|425437395|ref|ZP_18817812.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9432]
gi|389677621|emb|CCH93442.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9432]
Length = 485
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +A+L + L+ G L I +G P I +L +EL ++ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVANLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQ 103
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ A +K V K + + +K F + TL+ P+ + T +P L
Sbjct: 104 EVTAEELAVEKAVNKALSIIPVQIKTFWTATLYHPDDLPFTLNQLPEL 151
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
+ G G R +FLLE +A+L + L+ G L I +G P I +L +EL ++ +
Sbjct: 43 TSYGFPKTGKFRAKFLLESVANLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYH 102
Query: 179 QDCEA 183
Q+ A
Sbjct: 103 QEVTA 107
>gi|68534519|gb|AAH98514.1| Cryptochrome DASH [Danio rerio]
Length = 520
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 2 FPGTMH-----IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPIS-IFQKLKRELNFT 55
+ GT H G R RFLL+ + DL LK HG L + QG P +F+ +K+ + +
Sbjct: 44 YQGTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVFELIKQLGSVS 103
Query: 56 KLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
+ F ++ + ++K+K+ C +N + V+ F TL+ + + ++ P Y +
Sbjct: 104 TVAFHEEVASEEKSVEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFR 163
Query: 116 HTVSCIG 122
V G
Sbjct: 164 KAVEAQG 170
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 122 GTMH-----IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPIS-IFQKLKRELNFTKL 175
GT H G R RFLL+ + DL LK HG L + QG P +F+ +K+ + + +
Sbjct: 46 GTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVFELIKQLGSVSTV 105
Query: 176 CFEQDCEA 183
F ++ +
Sbjct: 106 AFHEEVAS 113
>gi|309779655|ref|ZP_07674414.1| deoxyribodipyrimidine photolyase family protein [Ralstonia sp.
5_7_47FAA]
gi|349616585|ref|ZP_08895722.1| hypothetical protein HMPREF0989_03968 [Ralstonia sp. 5_2_56FAA]
gi|308921596|gb|EFP67234.1| deoxyribodipyrimidine photolyase family protein [Ralstonia sp.
5_7_47FAA]
gi|348612230|gb|EGY61852.1| hypothetical protein HMPREF0989_03968 [Ralstonia sp. 5_2_56FAA]
Length = 516
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL-CFEQDCEALWHKRD 71
+ F+ ECL DL QL++ G +L + G +F +L F+ L E+ RD
Sbjct: 50 YLFIQECLHDLAEQLRACGARLQVAVGEVTEVFGRLHAAAAFSHLVSHEETGNGHTFARD 109
Query: 72 KKVKKWCAENNITVKEFVSHTL 93
K V +WC ++++T +E+ H +
Sbjct: 110 KAVARWCLDHDVTWREWPQHGV 131
>gi|448688386|ref|ZP_21694219.1| deoxyribodipyrimidine photolyase [Haloarcula japonica DSM 6131]
gi|445779447|gb|EMA30377.1| deoxyribodipyrimidine photolyase [Haloarcula japonica DSM 6131]
Length = 465
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R F+L+ L L ++ G L I +G P S+ +L E K+ + +D L
Sbjct: 40 HAGPPRVAFMLDALDSLREWYRNRGSDLVIAEGDPTSVLPELATEYGAEKVTWGKDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+RD V++ + ++ + + L +P + +G+
Sbjct: 100 ARERDAAVRQALDDADVAREAVQNAVLHEPGEITTNDGD 138
>gi|440756671|ref|ZP_20935871.1| cryptochrome DASH [Microcystis aeruginosa TAIHU98]
gi|440172700|gb|ELP52184.1| cryptochrome DASH [Microcystis aeruginosa TAIHU98]
Length = 485
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +A+L + L+ G L I +G P I +L +EL ++ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVANLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQ 103
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ A +K V K + + +K F + TL+ P+ + T +P L
Sbjct: 104 EVTAEELAVEKAVNKALSIIPVQIKTFWTATLYHPDDLPFTLNQLPEL 151
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
+ G G R +FLLE +A+L + L+ G L I +G P I +L +EL ++ +
Sbjct: 43 TSYGFPKTGKFRAKFLLESVANLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYH 102
Query: 179 QDCEA 183
Q+ A
Sbjct: 103 QEVTA 107
>gi|425453111|ref|ZP_18832925.1| Cryptochrome DASH [Microcystis aeruginosa PCC 7941]
gi|425461683|ref|ZP_18841157.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9808]
gi|389764695|emb|CCI09167.1| Cryptochrome DASH [Microcystis aeruginosa PCC 7941]
gi|389825403|emb|CCI24828.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9808]
Length = 485
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +A+L + L+ G L I +G P I +L +EL ++ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVANLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQ 103
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ A +K V K + + +K F + TL+ P+ + T +P L
Sbjct: 104 EVTAEELAVEKAVNKALSIIPVQIKTFWTATLYHPDDLPFTLNQLPEL 151
Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
+ G G R +FLLE +A+L + L+ G L I +G P I +L +EL ++ +
Sbjct: 43 TSYGFPKTGKFRAKFLLESVANLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYH 102
Query: 179 QDCEA 183
Q+ A
Sbjct: 103 QEVTA 107
>gi|448592357|ref|ZP_21651464.1| deoxyribodipyrimidine photolyase [Haloferax elongans ATCC BAA-1513]
gi|445731362|gb|ELZ82946.1| deoxyribodipyrimidine photolyase [Haloferax elongans ATCC BAA-1513]
Length = 480
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R R++L+ LA+L + G L + +G P S+ + L ++ + D L
Sbjct: 42 HAGAPRVRYMLDALAELRASYRGRGSDLLVARGDPRSLVPAVAEALGSERVVWNVDYSGL 101
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLH 116
+RD+ V+ E I +E V + P I TN P Y +Y +
Sbjct: 102 AKERDQAVELALDEAGID-RETVHDAIIFPPGSITTNAGDP---YSVYTY 147
>gi|448622754|ref|ZP_21669403.1| deoxyribodipyrimidine photolyase [Haloferax denitrificans ATCC
35960]
gi|445753262|gb|EMA04679.1| deoxyribodipyrimidine photolyase [Haloferax denitrificans ATCC
35960]
Length = 484
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R R+LL+ LA+L + G L + +G P ++ + L+ + + D L
Sbjct: 40 HAGAPRVRYLLDALAELREAYRDRGSDLLVARGDPRTVVPAVAAALDAERAVWGIDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLH 116
+RD V+ + + +E V ++ P I TN TY +Y +
Sbjct: 100 ARERDADVRLALDDAGV-ARESVHDAIFHPPGSITTNAGD---TYSVYTY 145
>gi|76802655|ref|YP_330750.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
gi|76558520|emb|CAI50112.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
Length = 462
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R FLL+ L+ L + G +LFI +G P ++ L +L + + +D L
Sbjct: 38 HAAPPRVAFLLDALSSLRAAYRDRGSELFIRRGDPANVLSALADDLGVDVVSWNRDYSGL 97
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
RD +V E +T + F + P I TN P Y +
Sbjct: 98 AADRDDRVADVLDEVGVTPQRF-HDAICHPPGTITTNAGDPYSVYSYF 144
>gi|113477930|ref|YP_723991.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110168978|gb|ABG53518.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 498
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL L+ G L I Q P + +L ++L+ + F Q
Sbjct: 50 FPKT---GVFRAKFLLESIADLRNNLQKLGSNLVIFQDKPEIVIPRLAQQLSAKSVFFHQ 106
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
+ L K ++ V + + + +K F HTL+ P+
Sbjct: 107 EVTELEVKVERLVHQALKQIGVRLKSFWGHTLYHPD 142
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G G R +FLLE +ADL L+ G L I Q P + +L ++L+ + F Q+
Sbjct: 49 GFPKTGVFRAKFLLESIADLRNNLQKLGSNLVIFQDKPEIVIPRLAQQLSAKSVFFHQEV 108
>gi|45387783|ref|NP_991249.1| cryptochrome DASH [Danio rerio]
gi|41688004|dbj|BAD08600.1| cryptochrome dash [Danio rerio]
Length = 520
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 2 FPGTMH-----IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFT 55
+ GT H G R RFLL+ + DL LK HG L + QG P + +L ++L + +
Sbjct: 44 YQGTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVS 103
Query: 56 KLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
+ F ++ + ++K+K+ C +N + V+ F TL+ + + ++ P Y +
Sbjct: 104 TVAFHEEVASEEKSVEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFR 163
Query: 116 HTVSCIGTM 124
V G +
Sbjct: 164 KAVEAQGRV 172
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 122 GTMH-----IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKL 175
GT H G R RFLL+ + DL LK HG L + QG P + +L ++L + + +
Sbjct: 46 GTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTV 105
Query: 176 CFEQDCEA 183
F ++ +
Sbjct: 106 AFHEEVAS 113
>gi|97047702|sp|Q4KML2.2|CRYD_DANRE RecName: Full=Cryptochrome DASH; AltName: Full=Protein CRY-DASH;
Short=zCRY-DASH
Length = 520
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 2 FPGTMH-----IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFT 55
+ GT H G R RFLL+ + DL LK HG L + QG P + +L ++L + +
Sbjct: 44 YQGTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVS 103
Query: 56 KLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
+ F ++ + ++K+K+ C +N + V+ F TL+ + + ++ P Y +
Sbjct: 104 TVAFHEEVASEEKSVEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFR 163
Query: 116 HTVSCIGTM 124
V G +
Sbjct: 164 KAVEAQGRV 172
Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 122 GTMH-----IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKL 175
GT H G R RFLL+ + DL LK HG L + QG P + +L ++L + + +
Sbjct: 46 GTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTV 105
Query: 176 CFEQDCEA 183
F ++ +
Sbjct: 106 AFHEEVAS 113
>gi|114768849|ref|ZP_01446475.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
HTCC2255]
gi|114549766|gb|EAU52647.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
HTCC2255]
Length = 519
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HKRD 71
+ F+ +CL DL+ +L G L + G + IF ++ + + ++ +W ++RD
Sbjct: 56 WHFIYDCLVDLNNELNDLGQPLIVQTGDVVDIFIQISEIFDIKNIYSHEETGNMWTYERD 115
Query: 72 KKVKKWCAENNITVKEFVSHTL 93
K+V+ WC +N I KE+ S+ +
Sbjct: 116 KRVQVWCKKNAIGQKEYPSNGV 137
>gi|194334030|ref|YP_002015890.1| deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
271]
gi|194311848|gb|ACF46243.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
271]
Length = 477
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PGT +G +L L L+R S G+L I +G P+ I + L R+ K+ + +
Sbjct: 42 PGTWQMGSATRCWLHHSLVSLNR---SFDGKLGIFRGEPLEILKTLARQHKAEKIVWNRC 98
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVP 107
E KRD+ +K I V F LW+P V++ N N P
Sbjct: 99 YEPWRMKRDQGIKATLQAEGIEVSSFNGSLLWEPHEVLKQN-NTP 142
>gi|448439506|ref|ZP_21588070.1| deoxyribodipyrimidine photolyase [Halorubrum saccharovorum DSM
1137]
gi|445691040|gb|ELZ43235.1| deoxyribodipyrimidine photolyase [Halorubrum saccharovorum DSM
1137]
Length = 495
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R R LL+ LA L + G L + +G P SI L ++ ++ + +D L
Sbjct: 40 HASDVRVRRLLDGLAALRDDYRDRGSDLLVARGDPESILPDLADAVDADRVVWNRDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD V+K ++ + + L +P+ I+TN P Y Y
Sbjct: 100 ARERDAGVRKALNDSGVEREAHHDAVLHEPD-SIRTNAGDPYSVYTYY 146
>gi|448677847|ref|ZP_21689037.1| deoxyribodipyrimidine photolyase [Haloarcula argentinensis DSM
12282]
gi|445773522|gb|EMA24555.1| deoxyribodipyrimidine photolyase [Haloarcula argentinensis DSM
12282]
Length = 465
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R F+L+ L L + G L I +G P S+ L E K+ + +D L
Sbjct: 40 HAGPPRVAFMLDALDSLREWYRDRGSDLVITEGDPTSVLPALAAEYGTEKVTWGKDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+RD V++ + ++ + + L +P + +G+
Sbjct: 100 ARERDAAVRQALDDEDVAREAVQNAVLHEPGEITTNDGD 138
>gi|443310104|ref|ZP_21039770.1| deoxyribodipyrimidine photolyase, partial [Synechocystis sp. PCC
7509]
gi|442779852|gb|ELR90079.1| deoxyribodipyrimidine photolyase, partial [Synechocystis sp. PCC
7509]
Length = 116
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL----NFTKLCFEQDC 63
+G R +FL E L +LDR LK G QL++ +G+ + Q+L R+L + KL F D
Sbjct: 1 MGKARVKFLFESLENLDRNLKGRGSQLYLFEGNSTDVIQELTRQLIQKGDCPKLFFNHDV 60
Query: 64 EALWH-KRDKKVKKWCAENNITVKEFVSHTLWDPE 97
+ + +RD+++ + E+++ + +++ L E
Sbjct: 61 QVRYGIERDRQITDFYREHSLEYHQGLNNFLQTDE 95
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL----NFTKLCFEQDC 181
+G R +FL E L +LDR LK G QL++ +G+ + Q+L R+L + KL F D
Sbjct: 1 MGKARVKFLFESLENLDRNLKGRGSQLYLFEGNSTDVIQELTRQLIQKGDCPKLFFNHDV 60
Query: 182 EA 183
+
Sbjct: 61 QV 62
>gi|307153163|ref|YP_003888547.1| DASH family cryptochrome [Cyanothece sp. PCC 7822]
gi|306983391|gb|ADN15272.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822]
Length = 495
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE LADL + L+ G L I +G P I +L +EL T + + Q
Sbjct: 50 FPKT---GNFRAQFLLESLADLKKSLQERGSDLIIRKGLPEKIIPQLAQELKLTAVYYHQ 106
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ A +K ++ + + + F TL+ P+ + ++P L
Sbjct: 107 EVTAEELAVEKALESGLNKIRVKTESFWGATLYHPDNLPFKIAHIPEL 154
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
+ G G R +FLLE LADL + L+ G L I +G P I +L +EL T + +
Sbjct: 46 TSYGFPKTGNFRAQFLLESLADLKKSLQERGSDLIIRKGLPEKIIPQLAQELKLTAVYYH 105
Query: 179 QDCEA 183
Q+ A
Sbjct: 106 QEVTA 110
>gi|426404142|ref|YP_007023113.1| deoxyribodipyrimidine photo-lyase [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425860810|gb|AFY01846.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 435
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + + D+ +QLK+ L + G P+ + + L E+ + D E KRD
Sbjct: 52 RVTFIYDQIQDIKQQLKTKKSDLLVRHGKPLEVLKALSTEMEIEAIYANHDYEPAACKRD 111
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
+KV W A+ I F L++ + ++ T P Y Y + V
Sbjct: 112 EKVAAWAAKAGIEFLTFKDQCLFEKDEIL-TEARKPYTVYTPYKNKV 157
>gi|315636258|ref|ZP_07891510.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri JV22]
gi|315479467|gb|EFU70148.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri JV22]
Length = 450
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + + L LKS G L I +P ++F KLK+E NF ++ D + KRD
Sbjct: 46 RVTFIYKSVYKLKEDLKSIGLDLAIFFDTPKNVFTKLKKE-NFDEILVSVDFDNYAKKRD 104
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMH 125
++V+K I ++ F+ L DP+++++++ YK++ +C+ +H
Sbjct: 105 EEVEKI-----IPLRRFLDSYLIDPKIILKSDQK----PYKVFTPFYNCLEPLH 149
>gi|346975848|gb|EGY19300.1| cryptochrome-1 [Verticillium dahliae VdLs.17]
Length = 652
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 17 LECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
L+C DL + + +LF+++ P ++F KL + T L FE+D ++ +RD V
Sbjct: 58 LDCQNDLSASITKLNPKSKLFVLREGPQTLFPKLFKAWKVTHLVFEKDTDSYGRERDGVV 117
Query: 75 KKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
E + V TLWD + +++ NG P ++
Sbjct: 118 VAAAREAGVEVIMRSGRTLWDSDDIVRANGGKPTMS 153
>gi|427722807|ref|YP_007070084.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Leptolyngbya sp. PCC 7376]
gi|427354527|gb|AFY37250.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Leptolyngbya sp. PCC 7376]
Length = 518
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +A+L R L+ G L I G P I +L R+ + + +
Sbjct: 50 FPKT---GNFRGQFLLESVANLRRSLQQKGSNLLIYSGKPEVIISQLCRQFQIDTVYWHR 106
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
+ A +K+++K ++ N++V F TL +PE
Sbjct: 107 EVTAEETHIEKRLQKNLSQQNVSVGTFWGTTLHEPE 142
>gi|336451491|ref|ZP_08621928.1| deoxyribodipyrimidine photolyase [Idiomarina sp. A28L]
gi|336281304|gb|EGN74584.1| deoxyribodipyrimidine photolyase [Idiomarina sp. A28L]
Length = 479
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL-CFEQDCEA 65
H G + +RF+++ +A ++RQL+ Q+ ++ G+ ++F L++ + +E+ A
Sbjct: 44 HFGEHHWRFVMQSIAQMNRQLEPFQQQVKVLHGNAEAVFAHLQQTYGIQNIFSYEETGLA 103
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTL 93
RDK++ W EN + ++EF + +
Sbjct: 104 NTFARDKQIAAWAKENGVNLQEFAHNGI 131
>gi|116075564|ref|ZP_01472823.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
gi|116066879|gb|EAU72634.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
Length = 492
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FL+E L +L ++ + G +L +V G P+++ +L L L + +D E +RD
Sbjct: 56 RLWFLVETLRELQQRWRDAGSRLIVVAGDPVAVLPRLAALLEAPTLVWSRDVEPYARERD 115
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT 117
++V K + V L PE +++T G P Y +L
Sbjct: 116 RQVAKALQADGRKVLVDWDQLLVAPE-LLKTGGGDPYRVYGPFLRN 160
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
R FL+E L +L ++ + G +L +V G P+++ +L L L + +D E Y
Sbjct: 56 RLWFLVETLRELQQRWRDAGSRLIVVAGDPVAVLPRLAALLEAPTLVWSRDVEPY 110
>gi|390955135|ref|YP_006418893.1| deoxyribodipyrimidine photolyase [Aequorivita sublithincola DSM
14238]
gi|390421121|gb|AFL81878.1| deoxyribodipyrimidine photolyase [Aequorivita sublithincola DSM
14238]
Length = 434
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ E L + +L+ G + + G P IF+++ E + + +D E KRD
Sbjct: 52 RLTFIFETLQKMRTELQEQGSSIALYHGKPEQIFKQIISEFDVQNVITNRDYEPYAKKRD 111
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
+++ AE I F +++ + V++ +G+ P + Y Y+
Sbjct: 112 AQIETLLAEKEIGFYTFKDQVIFEKDEVVKNDGD-PYIVYTPYM 154
>gi|448602427|ref|ZP_21656483.1| deoxyribodipyrimidine photolyase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445747942|gb|ELZ99396.1| deoxyribodipyrimidine photolyase [Haloferax sulfurifontis ATCC
BAA-897]
Length = 482
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R R+LL+ LA+L + G L + +G P ++ + L+ + + D L
Sbjct: 40 HAGAPRVRYLLDALAELREAYRERGSDLLVARGDPRTVVPAVAAALDAERAVWGIDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLH 116
+RD V+ + + +E V ++ P I TN TY +Y +
Sbjct: 100 ARERDADVRLALDDAGV-AREPVHDAIFHPPGSITTNAGD---TYSVYTY 145
>gi|160902458|ref|YP_001568039.1| deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95]
gi|160360102|gb|ABX31716.1| Deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95]
Length = 462
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
N +F++ CL +L+ QL +L+ +G + + L + L + +D KR
Sbjct: 64 NAVQFMIACLKELNDQLHQLNARLYFFEGLTAKVVESLIKTLGIEAVFVNKDYTPFSKKR 123
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNR 130
D ++K C + KE L +P V++ NG +P + + +L I N+
Sbjct: 124 DNEIKAICERERVDFKEHFDVLLHEPTEVLKDNG-MPYIKFTDFLKKSKKIDVREPQKNK 182
Query: 131 FR 132
F+
Sbjct: 183 FK 184
>gi|325105098|ref|YP_004274752.1| DASH family cryptochrome [Pedobacter saltans DSM 12145]
gi|324973946|gb|ADY52930.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145]
Length = 433
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 54/106 (50%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT G R +F+++ + DL + LK+ GG L +V+G P + +L +E + ++ ++
Sbjct: 49 GTKKTGKLRAQFIIDSVTDLKKSLKALGGDLLVVKGKPEEVLPQLIKEYHVDEVYHHREV 108
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ V+ ++ + +K F+ HTL+ E + ++P L
Sbjct: 109 ASEETDISSAVEDALWKSQVNLKHFIGHTLYHKEDLPFPIKDIPDL 154
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 97 EVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ 156
E +++ VP + +T + GT G R +F+++ + DL + LK+ GG L +V+
Sbjct: 24 EATLKSTEIVPVYIFDPRYYTDTSYGTKKTGKLRAQFIIDSVTDLKKSLKALGGDLLVVK 83
Query: 157 GSPISIFQKLKRE 169
G P + +L +E
Sbjct: 84 GKPEEVLPQLIKE 96
>gi|411117034|ref|ZP_11389521.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
gi|410713137|gb|EKQ70638.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
Length = 547
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHK-R 70
R FLL+ L LD++L+ GG+L I G P+++ L RE + D E ++ + R
Sbjct: 49 RVEFLLQALMSLDQELRDRGGRLIIRSGDPVTVLPNLIRETEADGIYAHIDFERIYGRVR 108
Query: 71 DKKVKKWCAENNITVKEF 88
D ++ + AE + ++ F
Sbjct: 109 DARLNQALAEQGLKIRWF 126
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
R FLL+ L LD++L+ GG+L I G P+++ L RE + D E
Sbjct: 49 RVEFLLQALMSLDQELRDRGGRLIIRSGDPVTVLPNLIRETEADGIYAHIDFE 101
>gi|448506272|ref|ZP_21614382.1| deoxyribodipyrimidine photolyase [Halorubrum distributum JCM 9100]
gi|448525108|ref|ZP_21619526.1| deoxyribodipyrimidine photolyase [Halorubrum distributum JCM 10118]
gi|445699922|gb|ELZ51940.1| deoxyribodipyrimidine photolyase [Halorubrum distributum JCM 9100]
gi|445700080|gb|ELZ52095.1| deoxyribodipyrimidine photolyase [Halorubrum distributum JCM 10118]
Length = 518
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R R LL+ LA L + G L + +G P S+ +L L+ ++ + +D L
Sbjct: 46 HASDVRVRRLLDGLAALRDDYRERGSDLLVARGDPESLLPRLADALDAERVVWNRDYSGL 105
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD V++ ++ + L +P+ I+TN P Y Y
Sbjct: 106 ARERDAAVRRALDAVDVAREAHHDAVLHEPD-AIRTNAGDPYSVYSYY 152
>gi|359415637|ref|ZP_09208066.1| deoxyribodipyrimidine photo-lyase [Candidatus Haloredivivus sp.
G17]
gi|358034017|gb|EHK02493.1| deoxyribodipyrimidine photo-lyase [Candidatus Haloredivivus sp.
G17]
Length = 438
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+GY R +F E L + L+ L I +G+PI +KL E K+ F +D
Sbjct: 13 LGYPRVKFWRESLIEFKEDLQEKNKDLVIKKGNPIEQLKKLIEETGAEKIYFNRDYSKYS 72
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD+K + +I V++F T+++ E ++ TN P TY Y
Sbjct: 73 RERDEKFRG----LDIEVEDFKDVTMFEKEEIL-TNDGTPYKTYTYY 114
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+GY R +F E L + L+ L I +G+PI +KL E K+ F +D Y
Sbjct: 13 LGYPRVKFWRESLIEFKEDLQEKNKDLVIKKGNPIEQLKKLIEETGAEKIYFNRDYSKY 71
>gi|448568084|ref|ZP_21637692.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
gi|445727546|gb|ELZ79157.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
Length = 484
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R R+LL+ L++L + G L + +G P ++ + L+ + + D L
Sbjct: 40 HAGAPRVRYLLDALSELRDAYRERGSDLLVARGDPRTVVPAVAAALDAERAVWGIDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLH 116
+RD V+ E + +E V ++ P I TN TY +Y +
Sbjct: 100 ARERDADVRLALDEAGV-AREPVHDAIFHPPGSITTNAGD---TYSVYTY 145
>gi|221134513|ref|ZP_03560818.1| deoxyribodipyrimidine photolyase [Glaciecola sp. HTCC2999]
Length = 441
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL 57
H+G +R+RF+ + L DL QL + G QL I G P+ I ++L + NFT +
Sbjct: 56 HMGQHRYRFIRQALDDLQSQLHTFGQQLHIYYGEPLDIIEQLNTQFNFTHI 106
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 125 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL 175
H+G +R+RF+ + L DL QL + G QL I G P+ I ++L + NFT +
Sbjct: 56 HMGQHRYRFIRQALDDLQSQLHTFGQQLHIYYGEPLDIIEQLNTQFNFTHI 106
>gi|88802270|ref|ZP_01117797.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii
23-P]
gi|88781128|gb|EAR12306.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii
23-P]
Length = 434
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 12 RFRFLLECLADLDRQL-KSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
R F+ + L D+ L K HG + ++ G+P +IF+KL E + + +D E +R
Sbjct: 52 RLNFIYDTLQDMRAILEKKHGSSIAMLHGNPSAIFEKLISEYSIHTVFTNRDYEPYATER 111
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
D K++ + N I F +++ V++ +G L YK+Y
Sbjct: 112 DNKIQALLSSNGIHFDTFKDQVIFEKNEVVKKDG----LPYKVY 151
>gi|402495080|ref|ZP_10841814.1| deoxyribodipyrimidine photo-lyase [Aquimarina agarilytica ZC1]
Length = 433
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + L +++ QL + + G P+ IF++L +E+N T + D E RD
Sbjct: 51 RLNFIYDSLLEINLQLNKENKGISLYHGKPLDIFKQLCKEINITSVYTNHDYEPYAQNRD 110
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
++ + N I K + ++ +++ +G+ P + Y Y
Sbjct: 111 TEIADFLNTNGIPFKTYKDQVYFEKNEIVKADGS-PYMVYTPY 152
Score = 38.9 bits (89), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 99 VIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGS 158
+ N NV P+ ++ + ++ R F+ + L +++ QL + + G
Sbjct: 24 ALSENKNVLPI----FIFDTEILNSLPKKDARLNFIYDSLLEINLQLNKENKGISLYHGK 79
Query: 159 PISIFQKLKRELNFTKLCFEQDCEAY 184
P+ IF++L +E+N T + D E Y
Sbjct: 80 PLDIFKQLCKEINITSVYTNHDYEPY 105
>gi|289580258|ref|YP_003478724.1| deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|448281497|ref|ZP_21472802.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
gi|289529811|gb|ADD04162.1| Deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|445578544|gb|ELY32948.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
Length = 468
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+LE L++L + GG L + G P ++ RE ++ + +D L KRD
Sbjct: 47 RVAFMLESLSELRAWYRERGGDLVVATGDPREELPRIAREHGAERVSWNRDYSGLASKRD 106
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
++V++ + I L++P + G TY +Y
Sbjct: 107 EEVREALTDAGIEATSVDDALLFEPGSITTQQGE----TYAVY 145
>gi|254468959|ref|ZP_05082365.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13]
gi|207087769|gb|EDZ65052.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13]
Length = 429
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + L D+ + LK +G ++I+ G P+ KL +N + +D E RD
Sbjct: 11 RVDFIYQVLQDIKQTLKKYGSDIWILFGDPVHEIPKLAESINANAIFVNRDYEKYGVNRD 70
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
V+K +E N T + F L++ + ++ N
Sbjct: 71 NDVQKKLSELNKTFQSFKDQVLFEADEIVTKNN 103
Score = 36.6 bits (83), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
R F+ + L D+ + LK +G ++I+ G P+ KL +N + +D E Y
Sbjct: 11 RVDFIYQVLQDIKQTLKKYGSDIWILFGDPVHEIPKLAESINANAIFVNRDYEKY 65
>gi|148261327|ref|YP_001235454.1| DNA photolyase domain-containing protein [Acidiphilium cryptum
JF-5]
gi|146403008|gb|ABQ31535.1| DNA photolyase domain protein [Acidiphilium cryptum JF-5]
Length = 214
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I + ++ FL C+ DL + + GG+L + G I + + L+R L L ++ W
Sbjct: 47 ISHRQYAFLAGCIEDLAAAIAAAGGRLLVCVGPAIEVLEALRRRLGGFALWSHEETGNRW 106
Query: 68 -HKRDKKVKKWCAENNITVKEF 88
H RD+ V++W + E
Sbjct: 107 THARDRAVRRWARAQGVAWTEL 128
>gi|443320341|ref|ZP_21049448.1| deoxyribodipyrimidine photolyase [Gloeocapsa sp. PCC 73106]
gi|442789946|gb|ELR99572.1| deoxyribodipyrimidine photolyase [Gloeocapsa sp. PCC 73106]
Length = 478
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +L+ CL L Q + GG+L +++G P I +L +L + + D E
Sbjct: 47 IAPARISYLIGCLQLLQAQYQERGGELLLLRGKPTEIIPRLGIQLQARGVYWNLDVEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD+ V++ + I VK L P V+ +G+ Y++Y
Sbjct: 107 KERDRLVQRELEQQKIVVKTVWDQLLQSPGQVLTKSGD----PYQVY 149
>gi|296135391|ref|YP_003642633.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
gi|295795513|gb|ADG30303.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
Length = 493
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HKRDKK 73
F +C+A L L G +L + G +F+ ++RE+ FT L ++ W + RDK+
Sbjct: 53 FAADCVAALRESLTQAGLRLLVRVGDVPQVFEGVRREMRFTHLFSHEETGPGWTYARDKR 112
Query: 74 VKKWCAENNITVKEF 88
V WC E + +E+
Sbjct: 113 VAHWCREQGVIWQEW 127
>gi|443318941|ref|ZP_21048182.1| cryptochrome, DASH family [Leptolyngbya sp. PCC 6406]
gi|442781475|gb|ELR91574.1| cryptochrome, DASH family [Leptolyngbya sp. PCC 6406]
Length = 494
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE LADL + L+ GG L + QG P + L RE+ ++ + +
Sbjct: 47 FPKT---GAFRAQFLLEALADLRQSLRRLGGDLVVRQGFPEQVLPALAREVKCDRVYWHR 103
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
+ + + + A + V+ F TL+ P+
Sbjct: 104 EVTPEETTVESALTRTLATQGVAVQHFWGATLYHPD 139
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G G R +FLLE LADL + L+ GG L + QG P + L RE+ ++ + ++
Sbjct: 46 GFPKTGAFRAQFLLEALADLRQSLRRLGGDLVVRQGFPEQVLPALAREVKCDRVYWHREV 105
>gi|428769113|ref|YP_007160903.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium aponinum PCC 10605]
gi|428683392|gb|AFZ52859.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium aponinum PCC 10605]
Length = 491
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R +FL+E +ADL L+ G L + +G P I + ++ N T+ F Q+
Sbjct: 54 GFAKTGKYRAKFLIESVADLRESLQKLGTDLIVRKGIPEQIIPDIAKQYNVTEFYFSQEA 113
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
K +K++ K + +I VK TL+ P+ + + N+P L
Sbjct: 114 TEEEIKVEKRLIKALKQLHIQVKSCWQSTLYQPDDLPFSIENLPDL 159
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 118 VSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177
+ G G R +FL+E +ADL L+ G L + +G P I + ++ N T+ F
Sbjct: 50 TTSFGFAKTGKYRAKFLIESVADLRESLQKLGTDLIVRKGIPEQIIPDIAKQYNVTEFYF 109
Query: 178 EQDC 181
Q+
Sbjct: 110 SQEA 113
>gi|157412647|ref|YP_001483513.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215]
gi|157387222|gb|ABV49927.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215]
Length = 478
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 7/161 (4%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FL L +L G +L I +G PI I +L + ++ + + + E RD
Sbjct: 51 RAWFLANSLQELGNNWNKMGSRLVIEKGDPILIIPQLAKLIDAKFVFWNKSIEPYEINRD 110
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRF 131
K+KK E NI E H L +P + N N P Y + + YN++
Sbjct: 111 LKIKKNLKEKNIQFIESWDHLLVEPSKIFSGN-NKPYSVYGPFYKNLKSKMKFLGSYNQY 169
Query: 132 RFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 172
+ + + D+D +LK + + S S+ K + + F
Sbjct: 170 KVIFQ-FKDIDNKLKENK-----IINSSDSVLNKFLKNIKF 204
>gi|119503732|ref|ZP_01625814.1| deoxyribodipyrimidine photolyase, putative [marine gamma
proteobacterium HTCC2080]
gi|119460240|gb|EAW41333.1| deoxyribodipyrimidine photolyase, putative [marine gamma
proteobacterium HTCC2080]
Length = 490
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL-CFEQDCEA 65
H + F+ + LADL+ QL+ HG ++++++G PI++F + + L +E+
Sbjct: 45 HYRRRHWHFIAQSLADLNHQLQPHGTKVWVLEGDPITLFTAINQSQRIHHLFSYEETGLE 104
Query: 66 LWHKRDKKVKKWCAENNITVKEFVS 90
+ RD++V W + +EF +
Sbjct: 105 VTFARDREVITWAKSQGVCWQEFPT 129
Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 33/56 (58%)
Query: 113 MYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
+Y+ + H + F+ + LADL+ QL+ HG ++++++G PI++F + +
Sbjct: 33 VYIVEPELLKNPHYRRRHWHFIAQSLADLNHQLQPHGTKVWVLEGDPITLFTAINQ 88
>gi|409200638|ref|ZP_11228841.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
[Pseudoalteromonas flavipulchra JG1]
Length = 492
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH-KR 70
+F+F+ E L L QL+ GG L I QG I I +K+ + + L Q+ W +R
Sbjct: 49 QFQFVKESLLSLAEQLQLLGGTLTIRQGDIIEILEKIHQHIAIATLYCHQETGNTWTFER 108
Query: 71 DKKVKKWCAENNITVKEF 88
D +V WC E +++ +E+
Sbjct: 109 DLRVIAWCKERHVSYEEY 126
>gi|434387065|ref|YP_007097676.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
gi|428018055|gb|AFY94149.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
Length = 511
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 21/108 (19%)
Query: 91 HTLW--------DPEVV-IQTNGNVPPLTYKM---YLHTVSCIGTMHIGYNRFRFLLECL 138
H LW D E+V + T N P L + + + +T + IGT R RFL E L
Sbjct: 2 HLLWFRRDLRLTDNEIVTLATADNAPVLPFFIIDPWFYTWADIGTA-----RVRFLFESL 56
Query: 139 ADLDRQLKSHGGQLFIVQGSPISIFQKLKREL----NFTKLCFEQDCE 182
DLDRQL+ G +L + +G+ ++ Q L +L KL F +D +
Sbjct: 57 IDLDRQLQELGSRLVLFEGNSTTVIQNLTTQLIDRGQRPKLFFNRDVQ 104
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL----NFTKLCFEQDC 63
IG R RFL E L DLDRQL+ G +L + +G+ ++ Q L +L KL F +D
Sbjct: 44 IGTARVRFLFESLIDLDRQLQELGSRLVLFEGNSTTVIQNLTTQLIDRGQRPKLFFNRDV 103
Query: 64 EALWH-KRDKKVKKWCAENNI 83
+ + RD+ + + E N+
Sbjct: 104 QVEYGISRDRAIVDFYRELNL 124
>gi|392541949|ref|ZP_10289086.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
[Pseudoalteromonas piscicida JCM 20779]
Length = 492
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH-KR 70
+F+F+ E L L QL+ GG L I QG I I +K+ + + L Q+ W +R
Sbjct: 49 QFQFVKESLLSLAEQLQLLGGTLTIRQGDIIEILEKIHQHIAIATLYCHQETGNTWTFER 108
Query: 71 DKKVKKWCAENNITVKEF 88
D +V WC E +++ +E+
Sbjct: 109 DLRVIAWCKERHVSYEEY 126
>gi|159898493|ref|YP_001544740.1| deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus DSM
785]
gi|159891532|gb|ABX04612.1| Deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus DSM
785]
Length = 486
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 45/109 (41%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
++G L L LD L+ G +L + G P++ Q+L E + + + +D
Sbjct: 45 YVGAALIAVTLAMLEALDHDLQQRGSRLIVRHGQPLAELQRLVSETQASGVYWNRDYLPY 104
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
KRD VK W E + F L +PE + P + Y Y+
Sbjct: 105 AIKRDSAVKHWLREQGLQAHSFHDSVLVEPEGLKTKTEQKPYVVYGSYV 153
>gi|435850828|ref|YP_007312414.1| deoxyribodipyrimidine photolyase [Methanomethylovorans hollandica
DSM 15978]
gi|433661458|gb|AGB48884.1| deoxyribodipyrimidine photolyase [Methanomethylovorans hollandica
DSM 15978]
Length = 452
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
N +F+L + DL+ QL + GG+L++ G P + KL E N + D R
Sbjct: 50 NALQFMLGSIKDLEAQLNALGGRLYLFSGLPHEVTAKLIGEENIDAVIVNHDYTPFSVHR 109
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
D + CAE+ +F TL Q G+V KMY
Sbjct: 110 DGAISAVCAEHGSEFHQFHDATL-------QVPGSVKTQQGKMY 146
>gi|443324015|ref|ZP_21052973.1| cryptochrome, DASH family [Xenococcus sp. PCC 7305]
gi|442796190|gb|ELS05502.1| cryptochrome, DASH family [Xenococcus sp. PCC 7305]
Length = 491
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL L G L + +G P I L +EL + + F
Sbjct: 50 FPKT---GAFRSQFLLEAVADLRNSLSQLGSNLIVRRGLPEKIIPSLAKELEISAVYFHG 106
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ + + ++K ++ I+VK F +TL+ P+ + + +P L
Sbjct: 107 EVTSEELAVEAALQKALSQIKISVKRFWGNTLYHPDDLPFSIEQIPEL 154
>gi|344211748|ref|YP_004796068.1| deoxyribodipyrimidine photolyase [Haloarcula hispanica ATCC 33960]
gi|343783103|gb|AEM57080.1| deoxyribodipyrimidine photolyase [Haloarcula hispanica ATCC 33960]
Length = 465
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R F+L+ L L + G L + +G P ++ L E K+ + +D L
Sbjct: 40 HAGPPRVAFMLDALDSLREWYRDRGSDLVVAEGDPTAVLPDLAAEYGAEKVTWGKDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+RD V++ + ++ + + L +P + +G+
Sbjct: 100 ARERDAAVRQALDDADVAREAVQNAVLHEPGEITTNDGD 138
>gi|326404724|ref|YP_004284806.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
gi|325051586|dbj|BAJ81924.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
Length = 539
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ + ++ FL C+ DL + + GG+L + G I + + L+R L L ++ W
Sbjct: 47 VSHRQYAFLAGCIEDLAAAIAAAGGRLLVCVGPAIEVLEALRRRLGGFALWSHEETGNRW 106
Query: 68 -HKRDKKVKKWCAENNITVKEF 88
H RD+ V++W + E
Sbjct: 107 THARDRAVRRWARAQGVAWTEL 128
>gi|78183823|ref|YP_376257.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902]
gi|78168117|gb|ABB25214.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902]
Length = 477
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FLLE L +L ++ ++ G +L I++G P+ + L L + + +D E +RD
Sbjct: 56 RLWFLLESLIELQQRWRAAGSRLLILEGDPVQVLPPLAERLGAEAVVWNRDVEPYSRERD 115
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
++V K + V L PE++ G+ Y++Y
Sbjct: 116 RQVAKRLQADGRKVVVDWDQLLIPPELLKTGAGD----PYRVY 154
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 30/125 (24%)
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHT-------LWDPEVVIQTNGNVPPLTYKMYLHTVS 119
WH+RD ++ +N+ ++ V + + DP +IQ ++PP+
Sbjct: 9 WHRRDLRLA-----DNLGIQAAVEISPAVTGVYVLDP-ALIQPPQSLPPMAPA------- 55
Query: 120 CIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179
R FLLE L +L ++ ++ G +L I++G P+ + L L + + +
Sbjct: 56 ----------RLWFLLESLIELQQRWRAAGSRLLILEGDPVQVLPPLAERLGAEAVVWNR 105
Query: 180 DCEAY 184
D E Y
Sbjct: 106 DVEPY 110
>gi|22297968|ref|NP_681215.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
gi|22294146|dbj|BAC07977.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
Length = 480
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 9/119 (7%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +L+ CL L + GG I +G P I ++ + L + + +D E
Sbjct: 46 IAAVRVAYLVGCLQALQEAYRRLGGSFLIFRGDPRQILPQVAKGLGAVAVHWHEDVEPYG 105
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWD----PEVVIQTNGNVPPLTYKMYLHTVSCIG 122
+RD+ V E I V+ T WD P IQT P Y + S +
Sbjct: 106 RERDRAVAAALKEKGIAVE-----TAWDQLLHPPEAIQTKQGQPYTVYSPFWRNWSSLA 159
>gi|88808070|ref|ZP_01123581.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
gi|88788109|gb|EAR19265.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
Length = 492
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FL+E L +L + + G +L ++QG P+++ +L L+ + + + +D E +RD
Sbjct: 56 RLWFLVESLIELQERWREAGSRLLVLQGDPLTLLPQLAALLDSSTVVWSRDVEPYARERD 115
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+ V K + V L PE++ NG+ Y++Y
Sbjct: 116 RGVAKALQADGRQVLVDWDQLLVAPELLKTGNGD----PYRVY 154
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
R FL+E L +L + + G +L ++QG P+++ +L L+ + + + +D E Y
Sbjct: 56 RLWFLVESLIELQERWREAGSRLLVLQGDPLTLLPQLAALLDSSTVVWSRDVEPY 110
>gi|408373113|ref|ZP_11170811.1| deoxyribodipyrimidine photo-lyase [Alcanivorax hongdengensis
A-11-3]
gi|407766951|gb|EKF75390.1| deoxyribodipyrimidine photo-lyase [Alcanivorax hongdengensis
A-11-3]
Length = 501
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HK 69
+++F+ E L DL RQL + G L++V+G +++ L L ++ W +
Sbjct: 48 RQWQFIAESLRDLRRQLAAIGLPLWVVEGETLTVLDGLHSRFGAFALHSHEEYGGHWTYA 107
Query: 70 RDKKVKKWCAENNITVKEFV 89
RD++VK WC +T +E
Sbjct: 108 RDRQVKAWCESRRVTWREHA 127
>gi|222479858|ref|YP_002566095.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
gi|222452760|gb|ACM57025.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
Length = 514
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R R LL+ LA L + G L + +G+P ++ +L L+ ++ + +D L
Sbjct: 45 HASDVRVRRLLDGLAALRDDYRDRGSDLLVARGAPETVLPELAAALDAERVVWNRDYSGL 104
Query: 67 WHKRDKKVKKWCAENNITVKEFVSH--TLWDPEVVIQTNGNVPPLTYKMY 114
+RD V+ A N+ + V H L PE I+TN P Y Y
Sbjct: 105 ARERDAGVR--TALNDAGIDREVLHDAVLHTPE-SIRTNAGDPYSVYSYY 151
>gi|384155474|ref|YP_005538289.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri ED-1]
gi|345469028|dbj|BAK70479.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri ED-1]
Length = 450
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + + L LKS G L I +P +IF KLK+E NF ++ D + KRD
Sbjct: 46 RVTFIYKSVYKLKEDLKSIGLDLAIFFDTPKNIFTKLKKE-NFDEILVSVDFDNYAKKRD 104
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN-----VPPLTYKMYLHTVSCIGTMHI 126
++V+K I ++ F+ L DP+++++++ P Y LH + I I
Sbjct: 105 EEVEKI-----IPLRRFLDSYLIDPKIILKSDQKPYKVFTPFYNYLEPLHQSNHIEEFKI 159
Query: 127 GYN 129
N
Sbjct: 160 ATN 162
>gi|443474143|ref|ZP_21064164.1| Cryptochrome [Pseudomonas pseudoalcaligenes KF707]
gi|442905078|gb|ELS29993.1| Cryptochrome [Pseudomonas pseudoalcaligenes KF707]
Length = 472
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
S +G +G +R RFLLE LA LD L+ HG +L +VQG + L L+ ++
Sbjct: 43 SPLGPRRLGVHRARFLLESLAALDAGLRQHGSRLLVVQGDAERVIPSLVERLDLDEVLTL 102
Query: 179 QDCEAY 184
++ +
Sbjct: 103 EEVAPF 108
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL 57
G +G +R RFLLE LA LD L+ HG +L +VQG + L L+ ++
Sbjct: 46 GPRRLGVHRARFLLESLAALDAGLRQHGSRLLVVQGDAERVIPSLVERLDLDEV 99
>gi|87123064|ref|ZP_01078915.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917]
gi|86168784|gb|EAQ70040.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917]
Length = 493
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FL+E L +L ++ + G +L +V G P ++ +L L+ + + +D E +RD
Sbjct: 56 RLWFLVESLIELQQRWREAGSRLLVVAGDPATVLPRLASLLDAPAVVWSRDVEPYARERD 115
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT 117
+ V + + V L +PE +++T G P Y +L
Sbjct: 116 RAVARALQADGRKVLVDWDQLLVNPE-LLKTGGGDPYRVYGPFLRN 160
>gi|374594255|ref|ZP_09667260.1| DNA photolyase FAD-binding [Gillisia limnaea DSM 15749]
gi|373872330|gb|EHQ04327.1| DNA photolyase FAD-binding [Gillisia limnaea DSM 15749]
Length = 434
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ E L + ++L+ +G L I G P+ +F+ L + ++ +D E KRD
Sbjct: 52 RVSFIHENLQKMRKELQKNGSSLAIYHGKPVEVFKDLLKNYKIQQVFTNRDYEPYAKKRD 111
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
+++K + F +++ + V++ +G+ P Y Y+
Sbjct: 112 SEIEKLLESETVQFHTFKDQVIFEKDEVVKKDGD-PYAVYTPYM 154
>gi|171057933|ref|YP_001790282.1| deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
gi|170775378|gb|ACB33517.1| Deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
Length = 493
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HKRDKK 73
+LL+CLA L L + G L + G + + L+RE T+L ++ W + RD+
Sbjct: 52 WLLKCLAPLRDALAARGLPLLVRTGEAVEVLAALRREFACTRLFSHEETGPGWSYARDRA 111
Query: 74 VKKWCAENNITVKEF 88
V +WC + + E+
Sbjct: 112 VARWCRAHGVAWTEW 126
>gi|410665733|ref|YP_006918104.1| Cryptochrome [Simiduia agarivorans SA1 = DSM 21679]
gi|409028090|gb|AFV00375.1| Cryptochrome [Simiduia agarivorans SA1 = DSM 21679]
Length = 433
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+G R FLL+ LADLDR+L++ G QL +++G P S+ +L R +L + C
Sbjct: 51 MGEKRRTFLLQSLADLDRRLRALGQQLLVLEGHPESLIPELVRRYRVNRLTVNEVC 106
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+G R FLL+ LADLDR+L++ G QL +++G P S+ +L R +L + C
Sbjct: 51 MGEKRRTFLLQSLADLDRRLRALGQQLLVLEGHPESLIPELVRRYRVNRLTVNEVC 106
>gi|295700812|ref|YP_003608705.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002]
gi|295440025|gb|ADG19194.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002]
Length = 499
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+L LA+LD L+++GG L ++ G P + KL EL + D E + +RD
Sbjct: 71 RIDFILASLAELDDALRANGGGLVVLYGDPAELVPKLAAELRVDAVFANHDYEPVAIERD 130
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
V + AE F T+++ + ++ NG P
Sbjct: 131 ATVGERLAEKGRQWLTFKDQTIFERDELL--NGQDKPFA 167
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 118 VSCIGTMHIGY----NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173
V T H G R F+L LA+LD L+++GG L ++ G P + KL EL
Sbjct: 55 VDAWQTRHPGEPVKDRRIDFILASLAELDDALRANGGGLVVLYGDPAELVPKLAAELRVD 114
Query: 174 KLCFEQDCE 182
+ D E
Sbjct: 115 AVFANHDYE 123
>gi|411119570|ref|ZP_11391950.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoriales cyanobacterium JSC-12]
gi|410711433|gb|EKQ68940.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoriales cyanobacterium JSC-12]
Length = 496
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE LADL R L+ G L I +G P + +L ++ + + +C+ +
Sbjct: 51 FPKT---GAFRAQFLLESLADLRRSLQQLGSNLIIRRGYPEQVIPELIQQFSISAVCYHK 107
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ + + +++ + ++ F HTL+ P + +P L
Sbjct: 108 EVTSEEVIVEDALERALKPMGVELRSFWGHTLYHPAELPFDISEIPEL 155
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
+ G G R +FLLE LADL R L+ G L I +G P + +L ++ + + +C+
Sbjct: 47 TSFGFPKTGAFRAQFLLESLADLRRSLQQLGSNLIIRRGYPEQVIPELIQQFSISAVCYH 106
Query: 179 QDCEA 183
++ +
Sbjct: 107 KEVTS 111
>gi|361124167|gb|EHK96280.1| putative Cryptochrome-2 [Glarea lozoyensis 74030]
Length = 586
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 33 QLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHT 92
+LF+++ +P +++ KL + T L FE+D +A RD V K E + V T
Sbjct: 25 KLFLLREAPQTLYPKLFKAWKVTHLVFEKDTDAYARDRDAAVIKAAKEAGVEVIVKSGRT 84
Query: 93 LWDPEVVIQTNGNVPPLT 110
LWD + +++ NG +T
Sbjct: 85 LWDSDELVKKNGGNATMT 102
>gi|410671657|ref|YP_006924028.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
gi|409170785|gb|AFV24660.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
Length = 459
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
N F+FLLE L DL RQ K+ GG+L++ G I +L +L + +D +R
Sbjct: 55 NAFQFLLESLEDLQRQFKAKGGRLYLFSGIAEDIIGQLAGKLGADAVFVNEDYTPFSRRR 114
Query: 71 DKKVKKWC 78
D+ + C
Sbjct: 115 DEATRNTC 122
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
N F+FLLE L DL RQ K+ GG+L++ G I +L +L + +D
Sbjct: 55 NAFQFLLESLEDLQRQFKAKGGRLYLFSGIAEDIIGQLAGKLGADAVFVNED 106
>gi|448601043|ref|ZP_21656326.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
gi|445734646|gb|ELZ86204.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
Length = 484
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R R+LL+ L++L + G L + +G P ++ + + + + D L
Sbjct: 40 HAGAPRVRYLLDALSELRDAYRERGSDLLVARGDPRTVVPAVAAAFDAERAVWGIDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLH 116
+RD V+ E + +E V ++ P I TN TY +Y +
Sbjct: 100 ARERDADVRLALDEAGV-AREPVHDAIFHPPGSITTNAGD---TYSVYTY 145
>gi|254414764|ref|ZP_05028529.1| deoxyribodipyrimidine photolyase family [Coleofasciculus
chthonoplastes PCC 7420]
gi|196178612|gb|EDX73611.1| deoxyribodipyrimidine photolyase family [Coleofasciculus
chthonoplastes PCC 7420]
Length = 475
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +++ CL +L ++ G QL I+ +P L LN + + +D E
Sbjct: 47 IAPARVTYMMGCLQELQQRYAEAGSQLLILHQNPSQGIPTLADTLNAKAVVWNRDVEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
RD+ V+ E I V+ F L P + +GN YK+Y
Sbjct: 107 RTRDRTVQDALEEKGIAVESFWDQLLHAPGEIRTNSGN----PYKVY 149
>gi|449016857|dbj|BAM80259.1| probable cryptochrome DASH [Cyanidioschyzon merolae strain 10D]
Length = 669
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G + IG +R FL EC+ DL + L+S G +L + GSP+ + +L ++ L F +
Sbjct: 147 FGGFLRIGEHRAYFLRECIVDLRQALRSRGQELIVEIGSPVDVIPRLVQKFGVQHLIFSK 206
Query: 62 D 62
+
Sbjct: 207 E 207
Score = 45.1 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
G + IG +R FL EC+ DL + L+S G +L + GSP+ + +L ++ L F ++
Sbjct: 149 GFLRIGEHRAYFLRECIVDLRQALRSRGQELIVEIGSPVDVIPRLVQKFGVQHLIFSKE 207
>gi|116071567|ref|ZP_01468835.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
gi|116065190|gb|EAU70948.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
Length = 477
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 3/145 (2%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FLLE L +L ++ ++ G +L I++G P+ + L L+ + + +D E +RD
Sbjct: 56 RLWFLLESLIELQQRWRAAGSRLLILEGDPVQMLPPLAERLSAEAVVWNRDVEPYSRERD 115
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRF 131
++V K + V L PE +++T P Y +L + G +
Sbjct: 116 RQVAKRLQADGRQVVVDWDQLLIAPE-LLKTGAGDPYRVYGPFLR--NWRGKVQAQQPTT 172
Query: 132 RFLLECLADLDRQLKSHGGQLFIVQ 156
L DLD L G L ++
Sbjct: 173 IEAPSGLVDLDSSLVPEGDPLAALR 197
Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 16/118 (13%)
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHI 126
WH+RD ++ +N+ ++ V E+ G + +H + M
Sbjct: 9 WHRRDLRLA-----DNLGIQAAV-------EISPAVTGVY--VLDPALIHPPQALPPMAP 54
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
R FLLE L +L ++ ++ G +L I++G P+ + L L+ + + +D E Y
Sbjct: 55 A--RLWFLLESLIELQQRWRAAGSRLLILEGDPVQMLPPLAERLSAEAVVWNRDVEPY 110
>gi|448546468|ref|ZP_21626632.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|448548505|ref|ZP_21627724.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
gi|448557855|ref|ZP_21632841.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445702921|gb|ELZ54861.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|445713992|gb|ELZ65763.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445714263|gb|ELZ66028.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
Length = 484
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R R+LL+ L++L + G L + +G P ++ + + + + D L
Sbjct: 40 HAGAPRVRYLLDALSELRDAYRERGSDLLVARGDPRTVVPAVAAAFDAERAVWGIDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLH 116
+RD V+ E + +E V ++ P I TN TY +Y +
Sbjct: 100 ARERDADVRLALDEAGV-AREPVHDAIFHPPGSITTNAGD---TYSVYTY 145
>gi|91777293|ref|YP_552501.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
LB400]
gi|91689953|gb|ABE33151.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
LB400]
Length = 499
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+L L +LD L++ GG L ++ G+P + KL EL + D E + +RD
Sbjct: 71 RIEFILAALGELDEALRADGGGLIVLYGNPAELVPKLADELGVDAVFANHDYEPVAIERD 130
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
V++ AE F +++ + V+ G P T
Sbjct: 131 GTVRERLAEAGRQWLTFKDQVIFERDEVL--TGQSKPFT 167
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
R F+L L +LD L++ GG L ++ G+P + KL EL + D E
Sbjct: 71 RIEFILAALGELDEALRADGGGLIVLYGNPAELVPKLADELGVDAVFANHDYE 123
>gi|410693074|ref|YP_003623695.1| putative Deoxyribodipyrimidine photo-lyase [Thiomonas sp. 3As]
gi|294339498|emb|CAZ87857.1| putative Deoxyribodipyrimidine photo-lyase [Thiomonas sp. 3As]
Length = 493
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HKRDKK 73
F +C++ L L G +L + G +F+ ++RE+ FT L ++ W + RDK+
Sbjct: 53 FAADCVSALQESLAGLGLRLLVRVGDVPQVFEDIRREVRFTHLFSHEETGPGWTYARDKR 112
Query: 74 VKKWCAENNITVKEF 88
V WC E + +E+
Sbjct: 113 VAHWCREQGVIWQEW 127
>gi|448639842|ref|ZP_21676990.1| deoxyribodipyrimidine photolyase [Haloarcula sinaiiensis ATCC
33800]
gi|445762369|gb|EMA13590.1| deoxyribodipyrimidine photolyase [Haloarcula sinaiiensis ATCC
33800]
Length = 465
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 45/99 (45%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R F+L+ L L + G L + +G P S+ +L + K+ + +D L
Sbjct: 40 HAGPPRVAFMLDALDSLREWYRDKGSDLVVAEGDPTSVLPELAAQHGAEKVTWGKDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+RD V++ + ++ + + L +P + +G+
Sbjct: 100 ARERDAAVRQALDDADVAREAVQNAVLHEPGEITTNDGD 138
>gi|297582490|ref|YP_003698270.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
gi|297140947|gb|ADH97704.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
Length = 512
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN-FTKLCFEQDCEALWHKRDKK 73
F+L+ LA+LDR+L G +L+ G I + +L+ +L F E++ L +RD
Sbjct: 51 FVLQSLAELDRRLDQRGARLYTAVGEVIDVLTRLEADLGPFQLFAHEENGTPLTFERDIA 110
Query: 74 VKKWCAENNITVKEF 88
V+ W T+KE+
Sbjct: 111 VRNWMKARGCTMKEW 125
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 133 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL----------NFTKLCFEQD 180
F+L+ LA+LDR+L G +L+ G I + +L+ +L N T L FE+D
Sbjct: 51 FVLQSLAELDRRLDQRGARLYTAVGEVIDVLTRLEADLGPFQLFAHEENGTPLTFERD 108
>gi|55377670|ref|YP_135520.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
43049]
gi|55230395|gb|AAV45814.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
43049]
Length = 465
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 45/99 (45%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R F+L+ L L + G L + +G P S+ +L + K+ + +D L
Sbjct: 40 HAGPPRVAFMLDALDSLREWYRDKGSDLVVAEGDPTSVLPELAAQHGAEKVTWGKDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+RD V++ + ++ + + L +P + +G+
Sbjct: 100 ARERDAAVRQALDDADVAREAVQNAVLHEPGEITTNDGD 138
>gi|448612276|ref|ZP_21662501.1| deoxyribodipyrimidine photolyase [Haloferax mucosum ATCC BAA-1512]
gi|445741508|gb|ELZ93008.1| deoxyribodipyrimidine photolyase [Haloferax mucosum ATCC BAA-1512]
Length = 482
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R R+LL+ LA+L +S G L + +G P ++ + L+ ++ + + L
Sbjct: 40 HAGSPRVRYLLDALAELRASYRSLGSDLLVARGDPRTVVPAVATALDAERVVWNEGYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+RD V+ E ++ +E V ++ I TN
Sbjct: 100 ARERDAAVRLALDEEGVS-RELVHDAIFHRPGSITTNAG 137
>gi|399029602|ref|ZP_10730423.1| deoxyribodipyrimidine photolyase [Flavobacterium sp. CF136]
gi|398072566|gb|EJL63778.1| deoxyribodipyrimidine photolyase [Flavobacterium sp. CF136]
Length = 431
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + L ++ QL + + I +G +++ L E + K+ F +D E KRD
Sbjct: 53 RVSFIYDSLEKINEQLSAIDSSILIKKGKTAEVWKSLLTEFDIQKVFFNKDYEPYAIKRD 112
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+++ +NNI + H +++ + + +++G +P Y Y
Sbjct: 113 QEIDALLQQNNIESLSYKDHVIFEEKEITKSDG-LPYTVYTPY 154
>gi|321453625|gb|EFX64843.1| hypothetical protein DAPPUDRAFT_333781 [Daphnia pulex]
Length = 179
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59
+G NR+RFL++ L DL+ LK G LF+++ SP +F+K +E N KL
Sbjct: 13 VGPNRWRFLIQSLQDLNDNLKKIGSCLFLLKESPTEMFKKYFKEWNIKKLTL 64
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177
+G NR+RFL++ L DL+ LK G LF+++ SP +F+K +E N KL
Sbjct: 13 VGPNRWRFLIQSLQDLNDNLKKIGSCLFLLKESPTEMFKKYFKEWNIKKLTL 64
>gi|388257028|ref|ZP_10134208.1| deoxyribodipyrimidine photolyase [Cellvibrio sp. BR]
gi|387939232|gb|EIK45783.1| deoxyribodipyrimidine photolyase [Cellvibrio sp. BR]
Length = 561
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL-CFEQDCEALWHKRDKKVK 75
L LADL L+S G +L I+ + F +LK L FT + E+ + ++RDK V
Sbjct: 98 LTALADLQFSLRSIGAELLIINTDLPAGFVQLKERLGFTHIYSHEETGAGITYQRDKAVA 157
Query: 76 KWCAENNITVKEF 88
+WC + N+ +E
Sbjct: 158 RWCKKENVLWQEL 170
>gi|374620740|ref|ZP_09693274.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HIMB55]
gi|374303967|gb|EHQ58151.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HIMB55]
Length = 492
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF-TKLCFEQDCEA 65
H ++F+ + LAD+ LKS+G QL IV+G+ + + + +L T L +E+
Sbjct: 45 HYRGRHWQFIAQSLADMQNTLKSYGHQLEIVEGNALDVLASINEKLGIQTLLSYEETGLD 104
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTL 93
+ +RD V +CA I +EF ++ +
Sbjct: 105 VTFQRDLHVSSYCASKGIDWQEFQTNGI 132
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 110 TYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE 169
T +Y+ + H ++F+ + LAD+ LKS+G QL IV+G+ + + + +
Sbjct: 30 TLLIYILEPDLVNNAHYRGRHWQFIAQSLADMQNTLKSYGHQLEIVEGNALDVLASINEK 89
Query: 170 LNF-TKLCFEQ 179
L T L +E+
Sbjct: 90 LGIQTLLSYEE 100
>gi|307726566|ref|YP_003909779.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
gi|307587091|gb|ADN60488.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
Length = 499
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PGT R F+L L +LD L++ GG L ++ G P+ + KL EL + D
Sbjct: 63 PGT-QAQDRRVEFILASLHELDEALRARGGGLVVLYGDPVDLVPKLAAELEVDAVFANHD 121
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
E +RD+ V++ ++ ++ F +++ + T N P + Y
Sbjct: 122 YEPAAIERDEAVRERLSDAGRALQTFKDQVIFE-RAELLTGQNKPFTVFTPY 172
Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
R F+L L +LD L++ GG L ++ G P+ + KL EL + D E
Sbjct: 71 RVEFILASLHELDEALRARGGGLVVLYGDPVDLVPKLAAELEVDAVFANHDYE 123
>gi|451335740|ref|ZP_21906305.1| Deoxyribodipyrimidine photolyase [Amycolatopsis azurea DSM 43854]
gi|449421632|gb|EMD27039.1| Deoxyribodipyrimidine photolyase [Amycolatopsis azurea DSM 43854]
Length = 442
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R FL CL LD QL GG+L +V+G P+ K R + + D
Sbjct: 41 GAPRVAFLHGCLKALDDQL---GGRLMLVKGDPVEEVVKAARAIGAAAVHVSSDTGPYGR 97
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+RD++VKK AE++I E S P + + +G+
Sbjct: 98 RRDQEVKKALAEHDIAWTETGSSYAITPGRITKPDGD 134
>gi|392401812|ref|YP_006438424.1| DNA photolyase FAD-binding protein [Turneriella parva DSM 21527]
gi|390609766|gb|AFM10918.1| DNA photolyase FAD-binding protein [Turneriella parva DSM 21527]
Length = 444
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
+R F+ + L LD L++ G L I +P+S++++L + N + +D E +R
Sbjct: 61 SRITFIFDTLQKLDADLRARGSMLRIFFDAPLSVYERLFQSFNVRGIWCNEDYEPYARER 120
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
D V C H ++ P V++ +G
Sbjct: 121 DAAVAGLCKAKGAEFHAHKDHVVFAPHEVLKDDG 154
Score = 36.2 bits (82), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+R F+ + L LD L++ G L I +P+S++++L + N + +D E Y
Sbjct: 61 SRITFIFDTLQKLDADLRARGSMLRIFFDAPLSVYERLFQSFNVRGIWCNEDYEPY 116
>gi|86134119|ref|ZP_01052701.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp.
MED152]
gi|85820982|gb|EAQ42129.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp.
MED152]
Length = 434
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 12 RFRFLLECLADLDRQLK-SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
R F+ + L ++ +L+ ++G + + G+P S+F +L + + +D E KR
Sbjct: 52 RVTFIYDTLQEMRGELQDNYGSSIAMFHGNPESVFSELIKNYTIDAVFTNRDYEPYATKR 111
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
D+ +++ +EN+I K F +++ + V++ +G+ P Y Y+
Sbjct: 112 DESIEQLLSENDIEFKTFKDQVIFEKDEVVKKDGD-PYKVYTPYM 155
>gi|428320773|ref|YP_007118655.1| deoxyribodipyrimidine photo-lyase type I [Oscillatoria
nigro-viridis PCC 7112]
gi|428244453|gb|AFZ10239.1| deoxyribodipyrimidine photo-lyase type I [Oscillatoria
nigro-viridis PCC 7112]
Length = 484
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ R +++ CL L + + G QL I+Q PI KL +N + + D E
Sbjct: 50 VAPARVTYMIGCLQKLSSRYREAGSQLLIIQDDPILGIPKLATAINAQAVFWNWDVEPYA 109
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+RD+ V + I V+ F L P+ + G
Sbjct: 110 KQRDRSVSNALQQAGIQVQNFWDQVLHAPDEIRSGTG 146
>gi|465501|sp|Q05380.1|YAT1_SYNP1 RecName: Full=Uncharacterized 31.6 kDa protein in atpI 5'region;
AltName: Full=URF1
gi|480494|pir||S36967 hypothetical protein 1 (uncI 5' region) - Synechococcus sp. (PCC
6716)
gi|49221|emb|CAA49877.1| unnamed protein product [Synechococcus sp.]
Length = 284
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 9/111 (8%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ R +LL CL L + GG L +VQG P + ++ L T + + +D E
Sbjct: 48 VAAVRVAYLLGCLQALKEAYQQRGGCLLMVQGDPRQVIPEVATTLKATAVHWHEDVEPYA 107
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWD----PEVVIQTNGNVPPLTYKMY 114
+RD+ V + I V H WD P +QT P Y +
Sbjct: 108 RERDRVVAATLNDLGIAV-----HRQWDQLLHPPSAVQTQQGQPYTVYTPF 153
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 20/118 (16%)
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHI 126
WH+RD ++ +N+ + HT P ++ + + +
Sbjct: 9 WHRRDLRLA-----DNLGLYAARQHT---------------PTVVGVFCFDPALLQGQDV 48
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
R +LL CL L + GG L +VQG P + ++ L T + + +D E Y
Sbjct: 49 AAVRVAYLLGCLQALKEAYQQRGGCLLMVQGDPRQVIPEVATTLKATAVHWHEDVEPY 106
>gi|406025137|ref|YP_006705438.1| deoxyribodipyrimidine photo-lyase [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
gi|404432736|emb|CCM10018.1| Deoxyribodipyrimidine photo-lyase [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
Length = 476
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 12/173 (6%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FL L L LK G LF+ G+P+ I KL +L + ++D E +RD
Sbjct: 52 RLSFLAHTLCLLHDALKRLEGSLFVFHGTPLEIIPKLVNDLKVEAIYADEDYEPANIERD 111
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRF 131
+ ++K A + T+ + H L P ++T N P Y Y+ +
Sbjct: 112 RTLQKALAP-HCTLHLYCDHLLIKPG-TMRTQSNQPYKVYTAYMKAFRAYIAAQGALAQN 169
Query: 132 RFLLECLADLDRQLKSHGGQLFI---VQGSPISIFQKLKRELNFTKLCFEQDC 181
R L+E L+ G+LFI + G I + +++ L +++D
Sbjct: 170 RLLIEYNYTLE-------GRLFIPSALDGRSIDLNVGVEKVLKQVGYIYKKDS 215
>gi|390437938|ref|ZP_10226447.1| Deoxyribodipyrimidine photo-lyase [Microcystis sp. T1-4]
gi|389838649|emb|CCI30571.1| Deoxyribodipyrimidine photo-lyase [Microcystis sp. T1-4]
Length = 474
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +LL CL +L++ + G QL I++G+P L L+ + F D E
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLLIIRGNPSQTLVNLASNLSAKAVFFNLDIEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVI 100
+RD++V I V+ F L P V+
Sbjct: 107 RQRDQQVIAALQTKGIEVETFWDQLLHAPGQVL 139
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
I R +LL CL +L++ + G QL I++G+P L L+ + F D E Y
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLLIIRGNPSQTLVNLASNLSAKAVFFNLDIEPY 105
>gi|337754405|ref|YP_004646916.1| deoxyribodipyrimidine photolyase [Francisella sp. TX077308]
gi|336446010|gb|AEI35316.1| Deoxyribodipyrimidine photolyase [Francisella sp. TX077308]
Length = 499
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ + ++ FLLECL DL+ +L G L I+ G+ + +F++L ++ + + Q+ W
Sbjct: 43 MSHRQYLFLLECLEDLNTELTRLGQPLIIMVGNAVEVFEQLIQKYHIKSVWSHQETWNNW 102
Query: 68 -HKRDKKVKKWCAENNIT 84
++RD K++K+ +N+IT
Sbjct: 103 TYQRDIKLEKFFKQNDIT 120
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 21/118 (17%)
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGT 123
+ +W KRD ++ ++N+ + + T G+V P+ Y+
Sbjct: 2 QVVWFKRDLRI-----DDNLALTQAA------------TKGDVLPI----YIIEPELWQQ 40
Query: 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ + ++ FLLECL DL+ +L G L I+ G+ + +F++L ++ + + Q+
Sbjct: 41 PDMSHRQYLFLLECLEDLNTELTRLGQPLIIMVGNAVEVFEQLIQKYHIKSVWSHQET 98
>gi|292657024|ref|YP_003536921.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|448293624|ref|ZP_21483728.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|291372710|gb|ADE04937.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|445569955|gb|ELY24522.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
Length = 484
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R R+LL+ LA+L + G L + +G P ++ + + + + D L
Sbjct: 40 HAGAPRVRYLLDALAELRGAYQERGSDLLVARGDPRTVVPAVAAAFDAERAVWGIDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLH 116
+RD V+ + + +E V ++ P I TN TY +Y +
Sbjct: 100 ARERDADVRLALDDAGV-AREPVHDAIFHPPGSITTNAGD---TYSVYTY 145
>gi|425471493|ref|ZP_18850353.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
gi|389882607|emb|CCI36943.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
Length = 474
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +LL CL +L++ + G QL I++G+P L L+ + F D E
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVI 100
+RD++V + I V+ F L P V+
Sbjct: 107 RQRDQQVIAALQKKGIEVETFWDQLLHAPGQVL 139
Score = 39.3 bits (90), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
I R +LL CL +L++ + G QL I++G+P L L+ + F D E Y
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPY 105
>gi|448739551|ref|ZP_21721563.1| deoxyribodipyrimidine photolyase [Halococcus thailandensis JCM
13552]
gi|445799170|gb|EMA49551.1| deoxyribodipyrimidine photolyase [Halococcus thailandensis JCM
13552]
Length = 465
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FLL L L + + G L+ V+G P + ++ E +L + D L +RD
Sbjct: 45 RVAFLLAALDSLQKSYRERGSDLYTVEGDPAEVLPEIADEHGVGELFWNHDYTGLARERD 104
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
++V++ E I + F +P + +G+
Sbjct: 105 ERVREALDEAGIAHEAFHDALHHEPGTITTNDGD 138
>gi|33864755|ref|NP_896314.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102]
gi|33632278|emb|CAE06734.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
8102]
Length = 477
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+ + R FL+E L +L ++ + G +L +V+G P+ + +L + + + +D E
Sbjct: 50 LPMAPARLWFLIESLIELQQRWRDAGSRLLVVEGDPVQLLPQLAERIAAEAVVWNRDVEP 109
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT 117
+RD++V + + V L PE +++T G P Y +L
Sbjct: 110 YARERDRQVAQRLQADGRKVVVDWDQLLIAPE-LLKTGGGDPYRVYGPFLRN 160
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183
+ + R FL+E L +L ++ + G +L +V+G P+ + +L + + + +D E
Sbjct: 50 LPMAPARLWFLIESLIELQQRWRDAGSRLLVVEGDPVQLLPQLAERIAAEAVVWNRDVEP 109
Query: 184 Y 184
Y
Sbjct: 110 Y 110
>gi|323529228|ref|YP_004231380.1| DNA photolyase FAD-binding protein [Burkholderia sp. CCGE1001]
gi|323386230|gb|ADX58320.1| DNA photolyase FAD-binding protein protein [Burkholderia sp.
CCGE1001]
Length = 499
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PGT R F+L L +LD L++ GG L ++ G P + KL +L + D
Sbjct: 63 PGT-QAQDRRVEFILGSLRELDEALRAQGGGLVVLYGDPADLVPKLADQLQVDAVFINHD 121
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWD 95
E +RD+ V++ AE T F +++
Sbjct: 122 YEPAAIERDEAVRERLAETGRTFLTFKDQVIFE 154
>gi|336173293|ref|YP_004580431.1| deoxyribodipyrimidine photo-lyase [Lacinutrix sp. 5H-3-7-4]
gi|334727865|gb|AEH02003.1| Deoxyribodipyrimidine photo-lyase [Lacinutrix sp. 5H-3-7-4]
Length = 434
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 12 RFRFLLECLADLDRQLKS-HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
R F+ E L ++ + L+ + L + G PI I++ L ++ N + D E +R
Sbjct: 52 RVSFIFETLQNMRQTLQDENNSSLAMFYGKPIDIYKSLIKDYNINTVYTNHDYEPYAKER 111
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
D +++ + EN I K + +++ V++ +G P + Y Y+
Sbjct: 112 DSEIQSFLEENKINFKTYKDQVIFEKNEVVKDDGK-PYVVYTPYM 155
>gi|313674183|ref|YP_004052179.1| deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
gi|312940881|gb|ADR20071.1| Deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
Length = 433
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + L +++ QLK G + I G P +++ L +E N + +D E +RD
Sbjct: 52 RVNFIHDQLTEINDQLKKIGSGVLIKHGKPEEVYKSLIKEYNIQAVFTNRDYEPYALERD 111
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+K+ + I +F H +++ + ++ T GN P YK++
Sbjct: 112 QKIDNILQQKGIGFYDFKDHVIFEKDEIL-TGGNEP---YKVF 150
>gi|407710068|ref|YP_006793932.1| deoxyribodipyrimidine photo-lyase [Burkholderia phenoliruptrix
BR3459a]
gi|407238751|gb|AFT88949.1| deoxyribodipyrimidine photo-lyase [Burkholderia phenoliruptrix
BR3459a]
Length = 499
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PGT R F+L L +LD L++ GG L ++ G P + KL +L + D
Sbjct: 63 PGTQAQD-RRVEFILGSLRELDEALRAQGGGLVVLYGDPADLVPKLADQLQVDAVFINHD 121
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWD 95
E +RD+ V++ AE + F +++
Sbjct: 122 YEPAAIERDEAVRERLAETGHAFRTFKDQVIFE 154
>gi|413958752|ref|ZP_11397991.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. SJ98]
gi|413941332|gb|EKS73292.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. SJ98]
Length = 467
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + +LDR L+ GG L + G P+ L RE + +D E RD
Sbjct: 21 RVPFIHASVVELDRTLREAGGALIVRHGHPVHDIPSLARECGANAVFVNRDYEPAAKARD 80
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+ V + A ++I F ++D + V+ G P T
Sbjct: 81 EAVAQKLASHDIAFFSFKDQAVFDHDDVM--TGAAKPYT 117
>gi|387815440|ref|YP_005430930.1| DNA photolyase [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381340460|emb|CCG96507.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase) [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 514
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH-KR 70
+++F+ E L L +QLK G L I G I LK++ T++ Q+ W +R
Sbjct: 58 QWQFVAESLESLRKQLKRLGSDLLIAHGEVIRTLDDLKQQYGITQVFCHQETGGDWTFQR 117
Query: 71 DKKVKKWCAENNITVKEF 88
DK V WC I +E+
Sbjct: 118 DKAVIAWCQSQQIEFREW 135
>gi|126695647|ref|YP_001090533.1| DNA photolyase [Prochlorococcus marinus str. MIT 9301]
gi|126542690|gb|ABO16932.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9301]
Length = 478
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FL L +L K G +L + +G P+ I +L ++++ + + + E RD
Sbjct: 51 RAWFLGNSLQELGNNWKKMGSRLIMEEGDPVLIIPQLAKKIDAKFVFWNKSIEPYEINRD 110
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRF 131
K+KK E NI V E H L +P + N N P Y + + + Y++
Sbjct: 111 LKIKKNLEEQNIQVIETWDHLLIEPLKIFSGN-NKPYSVYGPFYKNLKSKMNLLGPYDQD 169
Query: 132 RFLLECLADLDRQLKSH 148
+ + + D+D +LK +
Sbjct: 170 KVVFQ-FKDIDNKLKEN 185
>gi|425462955|ref|ZP_18842418.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
gi|389823910|emb|CCI27577.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
Length = 474
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +LL CL +L++ + G QL I++G+P L L+ + F D E
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVI 100
+RD++V I V+ F L P V+
Sbjct: 107 RQRDQQVIAALQTKGIEVETFWDQLLQAPGQVL 139
Score = 39.3 bits (90), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
I R +LL CL +L++ + G QL I++G+P L L+ + F D E Y
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPY 105
>gi|120556015|ref|YP_960366.1| deoxyribodipyrimidine photo-lyase [Marinobacter aquaeolei VT8]
gi|120325864|gb|ABM20179.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
[Marinobacter aquaeolei VT8]
Length = 505
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH-KR 70
+++F+ E L L +QLK G L I G I LK++ T++ Q+ W +R
Sbjct: 49 QWQFVAESLESLRKQLKRLGSDLLIAHGEVIRTLDDLKQQYGITQVFCHQETGGDWTFQR 108
Query: 71 DKKVKKWCAENNITVKEF 88
DK V WC I +E+
Sbjct: 109 DKAVIAWCQSQQIEFREW 126
>gi|399546315|ref|YP_006559623.1| Cryptochrome-like protein cry2 [Marinobacter sp. BSs20148]
gi|399161647|gb|AFP32210.1| Cryptochrome-like protein cry2 [Marinobacter sp. BSs20148]
Length = 515
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD-CEALWHKRDKK 73
F+ E L +LDR +S GG+L G + + ++ R TK+ Q+ + +RDK
Sbjct: 54 FIQETLEELDRDFQSIGGKLLQAVGETVDVLDRIHRVQPLTKIWTHQETTQNSQFQRDKA 113
Query: 74 VKKWCAENNITVKEFVSHTL 93
V WCA++ + + E + +
Sbjct: 114 VAAWCADHGVELLELAQNGI 133
>gi|47223394|emb|CAG04255.1| unnamed protein product [Tetraodon nigroviridis]
Length = 726
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 2 FPGTMH-----IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFT 55
+ GT H G R RFLLE + DL + L + G L + +G P + L ++L + +
Sbjct: 565 YAGTYHYSLPKTGPFRLRFLLESIRDLRKTLLNQGSNLIVRRGKPEEVVASLIKQLGSVS 624
Query: 56 KLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLW 94
+ F+++ + +K+VK CA+ + V HT W
Sbjct: 625 TVAFQEEVTSEELNVEKRVKDVCAQLKVKV-----HTCW 658
>gi|126665677|ref|ZP_01736658.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
gi|126629611|gb|EBA00228.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
Length = 519
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD-CEALWHKRDKK 73
F+ E L +LDR +S GG+L G + + ++ R TK+ Q+ + +RDK
Sbjct: 54 FIQETLEELDRDFQSIGGKLLQAVGETVDVLDRIHRVQPLTKIWTHQETTQNSQFQRDKA 113
Query: 74 VKKWCAENNITVKEFVSHTL 93
V WCA++ + + E + +
Sbjct: 114 VAAWCADHGVELLELAQNGI 133
>gi|94501552|ref|ZP_01308070.1| putative deoxyribodipyrimidine photolyase [Bermanella marisrubri]
gi|94426370|gb|EAT11360.1| putative deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
Length = 485
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE-A 65
H +RF+ E L DL++QL +G +L +++G + + Q + + + Q+ A
Sbjct: 43 HYDDRHWRFVYESLQDLNKQLSPYGHRLTVIKGEALDVLQAIHQRHEIHTIFSHQEIGIA 102
Query: 66 LWHKRDKKVKKWCAENNITVKE 87
RD+K++ WC N+I ++
Sbjct: 103 RTFSRDRKIEYWCKNNSIVWQQ 124
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 113 MYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 166
+Y+ S I H +RF+ E L DL++QL +G +L +++G + + Q +
Sbjct: 31 LYILEPSLIEDTHYDDRHWRFVYESLQDLNKQLSPYGHRLTVIKGEALDVLQAI 84
>gi|425443748|ref|ZP_18823817.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
gi|389735029|emb|CCI01399.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
Length = 474
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +LL CL +L++ + G QL I++G+P L L+ + F D E
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVI 100
+RD++V I V+ F L P V+
Sbjct: 107 RQRDQQVIAALQTKGIEVETFWDQLLHAPGQVL 139
Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
I R +LL CL +L++ + G QL I++G+P L L+ + F D E Y
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPY 105
>gi|448455076|ref|ZP_21594402.1| deoxyribodipyrimidine photolyase [Halorubrum lipolyticum DSM 21995]
gi|445814191|gb|EMA64159.1| deoxyribodipyrimidine photolyase [Halorubrum lipolyticum DSM 21995]
Length = 526
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R R LL+ LA L + G L + +G P ++ +L L+ ++ + +D L
Sbjct: 45 HASDVRVRRLLDGLAALRADYRDRGSDLLVARGDPETVLPELAGALDADRVVWNRDYSGL 104
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD V+ + I + L P+ I+TN P Y Y
Sbjct: 105 ARERDASVRTALNDAGIDREAHHDAVLHTPD-SIRTNAGDPYSVYTYY 151
>gi|348175729|ref|ZP_08882623.1| deoxyribodipyrimidine photo-lyase [Saccharopolyspora spinosa NRRL
18395]
Length = 453
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
NR FLL CL DL R L GG L + G+P +L E+ T++ D A R
Sbjct: 48 NRIAFLLGCLRDLRRSLGEAGGGLVVRHGTPAIEVARLVDEVGATEVHVAADVSAYARSR 107
Query: 71 DKKVKKWCAENNITV 85
+ ++ AE+ T+
Sbjct: 108 ENGLRLALAEHGCTL 122
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
NR FLL CL DL R L GG L + G+P +L E+ T++ D AY
Sbjct: 48 NRIAFLLGCLRDLRRSLGEAGGGLVVRHGTPAIEVARLVDEVGATEVHVAADVSAY 103
>gi|425456019|ref|ZP_18835730.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
gi|389802953|emb|CCI18036.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
Length = 474
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +LL CL +L++ + G QL I++G+P L L+ + F D E
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVI 100
+RD++V I V+ F L P V+
Sbjct: 107 RQRDQQVIAALQTKGIEVETFWDQLLHAPGQVL 139
Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
I R +LL CL +L++ + G QL I++G+P L L+ + F D E Y
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPY 105
>gi|425464194|ref|ZP_18843516.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
gi|389833855|emb|CCI21283.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
Length = 474
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +LL CL +L++ + G QL I++G+P L L+ + F D E
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVI 100
+RD++V I V+ F L P V+
Sbjct: 107 RQRDQQVIAALQTKGIEVETFWDQLLHAPGQVL 139
Score = 39.3 bits (90), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
I R +LL CL +L++ + G QL I++G+P L L+ + F D E Y
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPY 105
>gi|407648061|ref|YP_006811820.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Nocardia brasiliensis ATCC
700358]
gi|407310945|gb|AFU04846.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Nocardia brasiliensis ATCC
700358]
Length = 441
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
NR RFL L +LD +L++ GG+L + +G + + E++ + D +R
Sbjct: 49 NRARFLAAALGELDAELRAIGGKLVVRRGDVVEQVAAVAEEVHADSVHIAADVSGYSRRR 108
Query: 71 DKKVKKWCAENN-ITVKEFVSHTLWDPEVVIQTNG 104
++ ++ A+ + + S T DPEV++ + G
Sbjct: 109 EQALRDRLAQRSCLLHSHAASITAADPEVLVPSTG 143
>gi|389871451|ref|YP_006378870.1| deoxyribodipyrimidine photo-lyase [Advenella kashmirensis WT001]
gi|388536700|gb|AFK61888.1| deoxyribodipyrimidine photo-lyase [Advenella kashmirensis WT001]
Length = 473
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ CL DL RQL+ G L + G+P + + + LN + D E +RD
Sbjct: 45 RVAFIDACLDDLQRQLQQAGSGLIVRHGTPQQMIPDIAQALNVEAVFAGSDYEPQAKERD 104
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
++V A +N F ++D + ++ G
Sbjct: 105 REVSARLAADNREFFLFKDQVIFDTDEILNGQG 137
>gi|354612754|ref|ZP_09030696.1| DNA photolyase FAD-binding [Saccharomonospora paurometabolica YIM
90007]
gi|353222892|gb|EHB87187.1| DNA photolyase FAD-binding [Saccharomonospora paurometabolica YIM
90007]
Length = 454
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 121 IGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
+ T + G NR FL CLADLD L+ GG+L I G P + L E ++ D
Sbjct: 41 VATGYPGGNRAAFLARCLADLDAGLRERGGRLMIRTGDPADRVRGLVEEHGIREVHVADD 100
Query: 181 CEAY 184
+
Sbjct: 101 VSGH 104
Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
T + G NR FL CLADLD L+ GG+L I G P + L E ++ D
Sbjct: 42 ATGYPGGNRAAFLARCLADLDAGLRERGGRLMIRTGDPADRVRGLVEEHGIREVHVADDV 101
Query: 64 EA 65
Sbjct: 102 SG 103
>gi|443646532|ref|ZP_21129464.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa
DIANCHI905]
gi|159027902|emb|CAO89709.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443335725|gb|ELS50187.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa
DIANCHI905]
Length = 474
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +LL CL +L++ + G QL I++G P L L+ + F D E
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLLIIRGKPSQTLVNLAGNLSAKAVFFNLDIEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVI 100
+RD++V I V+ F L P V+
Sbjct: 107 RQRDQQVIAALQTKGIEVETFWDQLLQAPGQVL 139
Score = 39.3 bits (90), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
I R +LL CL +L++ + G QL I++G P L L+ + F D E Y
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLLIIRGKPSQTLVNLAGNLSAKAVFFNLDIEPY 105
>gi|443320872|ref|ZP_21049947.1| cryptochrome, DASH family [Gloeocapsa sp. PCC 73106]
gi|442789415|gb|ELR99073.1| cryptochrome, DASH family [Gloeocapsa sp. PCC 73106]
Length = 485
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G + G R +FL E + DL L+ G L + QG P I L R + + F Q+
Sbjct: 47 GLVKTGSFRAQFLRESVIDLRHNLQQLGSNLILRQGLPEVIIPALARSIAVDAVYFHQEV 106
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLW 94
A + +KK A++ ITV+ F TL+
Sbjct: 107 TAEELAVETALKKALAQSQITVQSFWGATLY 137
>gi|385206442|ref|ZP_10033312.1| deoxyribodipyrimidine photolyase [Burkholderia sp. Ch1-1]
gi|385186333|gb|EIF35607.1| deoxyribodipyrimidine photolyase [Burkholderia sp. Ch1-1]
Length = 499
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+L L +LD L++ GG L ++ G+P + L EL + D E + +RD
Sbjct: 71 RIEFILAALGELDEALRTDGGGLIVLYGNPADLVPTLADELGADAVFANHDYEPVAIERD 130
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+ V++ AE F +++ + V+ G P T
Sbjct: 131 ETVREQLAEAGRQWLTFKDQVIFERDEVL--TGQSKPFT 167
>gi|157737085|ref|YP_001489768.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri RM4018]
gi|157698939|gb|ABV67099.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri RM4018]
Length = 450
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + + L LKS G L I +P ++F KLK+E NF ++ D + KRD
Sbjct: 46 RVTFIYKSVYKLKEDLKSIGLDLAIFFDTPKNVFTKLKKE-NFDEILVSVDFDNYAKKRD 104
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMH 125
++V+K I ++ F+ L DP+++++++ YK++ + + +H
Sbjct: 105 EEVEKI-----IPLRRFLDSYLIDPKIILKSDQK----PYKVFTPFYNYLEPLH 149
>gi|387823921|ref|YP_005823392.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
gi|328675520|gb|AEB28195.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
Length = 499
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ Y ++ FL ECL +L+ +L G L I+ G + IF++L ++ + + ++ W
Sbjct: 43 MSYRQYLFLSECLEELNTELTKLGQSLIIMVGDAVEIFEQLIQKYSVKNIWSHEETWNNW 102
Query: 68 -HKRDKKVKKWCAENNIT 84
++RD K++K+ +NNIT
Sbjct: 103 TYQRDIKLEKFFKQNNIT 120
>gi|448659248|ref|ZP_21683216.1| deoxyribodipyrimidine photolyase [Haloarcula californiae ATCC
33799]
gi|445760750|gb|EMA12007.1| deoxyribodipyrimidine photolyase [Haloarcula californiae ATCC
33799]
Length = 465
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R F+L+ L L + G L + +G P S+ +L + K+ + +D L
Sbjct: 40 HAGPPRVAFMLDALDSLREWYRDKGSDLVVAEGDPTSVLPELAAQHGAEKVTWGKDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVP 107
+RD V++ + ++ +E V + + I TN P
Sbjct: 100 ARERDAAVRQALDDADV-AREAVQNAVLHEPGEITTNAGDP 139
>gi|425452606|ref|ZP_18832423.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 7941]
gi|389765542|emb|CCI08602.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 7941]
Length = 474
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +LL CL +L++ + G QL I++G+P L L+ + F D E
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLVIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVI 100
+RD++V I V+ F L P V+
Sbjct: 107 RQRDQQVIAALQTKGIEVETFWDQLLQAPGQVL 139
Score = 38.9 bits (89), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
I R +LL CL +L++ + G QL I++G+P L L+ + F D E Y
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLVIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPY 105
>gi|425438323|ref|ZP_18818728.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440755927|ref|ZP_20935128.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
gi|389676549|emb|CCH94466.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440173149|gb|ELP52607.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
Length = 474
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +LL CL +L++ + G QL I++G+P L L+ + F D E
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLVIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVI 100
+RD++V I V+ F L P V+
Sbjct: 107 RQRDQQVIAALQTKGIEVETFWDQLLQAPGQVL 139
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
I R +LL CL +L++ + G QL I++G+P L L+ + F D E Y
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLVIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPY 105
>gi|448633777|ref|ZP_21674276.1| deoxyribodipyrimidine photolyase [Haloarcula vallismortis ATCC
29715]
gi|445750468|gb|EMA01906.1| deoxyribodipyrimidine photolyase [Haloarcula vallismortis ATCC
29715]
Length = 465
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R F+L+ L L + L I +G P ++ +L E K+ + +D L
Sbjct: 40 HAGSPRVAFMLDALDSLREWYRDRDSDLVIAEGDPTNVLPELAAEYGAEKVTWGKDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+RD V++ + ++ + + L +P + +G+
Sbjct: 100 ARERDAAVRQALDDADVAREAVQNAVLHEPGEITTNDGD 138
>gi|433460771|ref|ZP_20418395.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
gi|432191119|gb|ELK48100.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
Length = 497
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN-FTKLCFEQDCEALWHKRD 71
++F+ E L DL ++LK GG+LF+ G ++ +++ F+ E++ + RD
Sbjct: 50 YQFVKESLHDLQKELKQRGGRLFVAVGEMETVLEEIYETYGPFSLHAHEENGTPVTFSRD 109
Query: 72 KKVKKWCAENNITVKE 87
++V+ W + +T+KE
Sbjct: 110 QRVRSWMKQKGLTMKE 125
>gi|449134940|ref|ZP_21770404.1| deoxyribodipyrimidine photolyase [Rhodopirellula europaea 6C]
gi|448886419|gb|EMB16826.1| deoxyribodipyrimidine photolyase [Rhodopirellula europaea 6C]
Length = 488
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R RFL+ECL DL +L+S GG+L + G P ++ Q L L+ + F +
Sbjct: 46 GFHRTGPFRARFLIECLTDLRSRLRSLGGELIVRVGRPETVLQDLLPSLSIDSVHFHYEP 105
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ V++ C + ++ TL P+ + + P L
Sbjct: 106 GTEEASTAESVQQLCDRHGVSTHVAYGDTLIHPDDLPFEIADTPGL 151
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 121 IGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177
+G G R RFL+ECL DL +L+S GG+L + G P ++ Q L L+ + F
Sbjct: 45 LGFHRTGPFRARFLIECLTDLRSRLRSLGGELIVRVGRPETVLQDLLPSLSIDSVHF 101
>gi|427739107|ref|YP_007058651.1| deoxyribodipyrimidine photolyase [Rivularia sp. PCC 7116]
gi|427374148|gb|AFY58104.1| deoxyribodipyrimidine photolyase [Rivularia sp. PCC 7116]
Length = 519
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL----NFTKLCFEQDC 63
+G R RFL ECL +LD L+ G +LFI +G+ + + Q + +EL KL F +D
Sbjct: 44 VGKARVRFLFECLENLDVNLQEIGSKLFIFEGNSVDVIQNITKELIQKSYQPKLYFNRDV 103
Query: 64 EALWH-KRDKKVKKWCAENNI 83
+ + RDK + + + N+
Sbjct: 104 QVEYGVTRDKLIIDFYQQQNL 124
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
+G R RFL ECL +LD L+ G +LFI +G+ + + Q + +EL
Sbjct: 44 VGKARVRFLFECLENLDVNLQEIGSKLFIFEGNSVDVIQNITKEL 88
>gi|119945274|ref|YP_942954.1| deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37]
gi|119863878|gb|ABM03355.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
[Psychromonas ingrahamii 37]
Length = 517
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H +RF+ + + D++ QL + Q+++ G ++ ++++ N T L ++ L
Sbjct: 57 HYDKRHWRFIWQSIEDINTQLSAFNAQIYVYFGDAVAGLNEIQQRFNITGLFSHEEVGLL 116
Query: 67 -WHKRDKKVKKWCAENNITVKEFVS 90
+RDK V KWC NI E S
Sbjct: 117 STFERDKAVNKWCKAQNIVWHESAS 141
>gi|123967845|ref|YP_001008703.1| DNA photolyase [Prochlorococcus marinus str. AS9601]
gi|123197955|gb|ABM69596.1| putative DNA photolyase [Prochlorococcus marinus str. AS9601]
Length = 477
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FL L +L K G +L + +G P+ I KL +++N + + + E RD
Sbjct: 51 RAWFLGNSLQELGNNWKKMGSRLVMEEGDPVLIIPKLAKKINAKFVFWNRSIEPYEINRD 110
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
++KK E NI V E H L +P + N N
Sbjct: 111 LQIKKNLKEQNIQVIETWDHLLVEPLKIFSGNNN 144
>gi|298208823|ref|YP_003717002.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus
HTCC2559]
gi|83848750|gb|EAP86619.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus
HTCC2559]
Length = 434
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 12 RFRFLLECLADLDRQLKS-HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
R F+ E L ++ ++L+ + L + +P +F+ L ++ ++ +D E +R
Sbjct: 52 RVTFIFETLQEMRKELQDDYDSSLAMFHDTPEKVFKSLVKDYQIQEVFTNRDYEPYAKER 111
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT 117
D +K+ ++NNI+ + +++ + V++ +G+ P L Y Y +T
Sbjct: 112 DTSIKELLSKNNISFNTYKDQVIFEKDEVVKKDGD-PYLVYTPYKNT 157
>gi|302035591|ref|YP_003795913.1| deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
gi|300603655|emb|CBK39986.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
Length = 481
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
F+L CL +L R L HG L G P+ + + + + +D E +RD++V
Sbjct: 52 FMLGCLEELRRSLALHGVSLAWRMGDPVESVLQAADDFKVDAVYWNRDYEPAALERDREV 111
Query: 75 KKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
++ A+ TV+ F H +++ E V +G+
Sbjct: 112 QQRLAQQGRTVRTFKDHVVFEAEEVRGLSGD 142
>gi|254423250|ref|ZP_05036968.1| FAD binding domain of DNA photolyase protein [Synechococcus sp. PCC
7335]
gi|196190739|gb|EDX85703.1| FAD binding domain of DNA photolyase protein [Synechococcus sp. PCC
7335]
Length = 527
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 10 YNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH- 68
Y ++ FL C+ + L+ GG + I G + + +L++ +L Q+ W
Sbjct: 42 YRQYLFLKGCVEETIEALEELGGSMAIASGDVVEVLSRLQKTYGNIELWAHQETGNNWTF 101
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLW 94
+RDK V+KWC + + E + +W
Sbjct: 102 QRDKAVRKWCQQAGVAFHEPLQFGVW 127
>gi|187921432|ref|YP_001890464.1| deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN]
gi|187719870|gb|ACD21093.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN]
Length = 499
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R +L L +LD L+++GG L ++ G P + KL EL + D E + RD
Sbjct: 71 RIELILGALGELDEALRANGGGLIVLYGDPADLVPKLADELGVDAVFANHDYEPVAIARD 130
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+ V++ AE F +++ + V+ T N P + Y
Sbjct: 131 ETVRETLAEAGRQWLTFKDQVIFERDEVL-TGQNKPFTVFTPY 172
>gi|311748125|ref|ZP_07721910.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
gi|126576610|gb|EAZ80858.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
Length = 432
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 46/93 (49%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + + +L +L+ G L + G+P ++Q+L ++ + +D E KRD
Sbjct: 52 RVSFIHDQIQNLKEELEKKGSTLLVKYGTPEEVYQELIKKFEIQAIYTNRDYEPYAKKRD 111
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+ ++K E I+ F +++P ++ +G
Sbjct: 112 RAIEKLAEEKGISFLTFKDQVIFEPGEILNGSG 144
>gi|444380451|ref|ZP_21179584.1| Cryptochrome [Enterovibrio sp. AK16]
gi|443675478|gb|ELT82207.1| Cryptochrome [Enterovibrio sp. AK16]
Length = 496
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H +RF+ + L DL++QL GG++ +V+ I L + L ++ +
Sbjct: 54 HYSERHWRFVWQSLEDLNQQLAPFGGKVLVVRSECIEALSSLHTQFKIKTLYSHEETGLM 113
Query: 67 -WHKRDKKVKKWCAENNITVKEF 88
RDK+V KWC E+ I +E+
Sbjct: 114 KTFTRDKEVGKWCEEHEIDWQEY 136
>gi|317968588|ref|ZP_07969978.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205]
Length = 479
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FLLE L +L + G QL ++QG P + +L + + + + +D E +RD
Sbjct: 52 RVWFLLESLKELQASWRKAGSQLLLLQGDPAEVLPQLAKAIGAGVVAWNRDVEPYGRERD 111
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
++V V L PE ++T G P Y++Y
Sbjct: 112 RRVAAALQAQGQKVLVDWDQLLVAPE-ALKTGGGDP---YRVY 150
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%)
Query: 113 MYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 172
+++ + + + R FLLE L +L + G QL ++QG P + +L + +
Sbjct: 35 VFVLDPAILSAADMAPARVWFLLESLKELQASWRKAGSQLLLLQGDPAEVLPQLAKAIGA 94
Query: 173 TKLCFEQDCEAY 184
+ + +D E Y
Sbjct: 95 GVVAWNRDVEPY 106
>gi|379707822|ref|YP_005263027.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Nocardia cyriacigeorgica
GUH-2]
gi|374845321|emb|CCF62385.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Nocardia cyriacigeorgica
GUH-2]
Length = 442
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
NR RFLL LA+LD +L G L + +G ++ +L RE T + D AY
Sbjct: 52 NRIRFLLAALAELDDELHRRGSHLVLRRGDTVTETARLAREAGATDVHLAADVSAY 107
Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
NR RFLL LA+LD +L G L + +G ++ +L RE T + D A
Sbjct: 52 NRIRFLLAALAELDDELHRRGSHLVLRRGDTVTETARLAREAGATDVHLAADVSA 106
>gi|318078311|ref|ZP_07985643.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actF]
Length = 487
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 3 PGTMHIGY---NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59
PG +G+ NR FL +CL DLD L+ GG+L + G P + ++L ++
Sbjct: 38 PGIKKVGFHAANRAAFLADCLGDLDAGLRERGGRLVVRAGDPAQVVRELVGSTGAERVHV 97
Query: 60 EQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPP 108
A R +++ A T E V H E VI +PP
Sbjct: 98 AAGVSAYARNRADRLR---AALEGTGAELVEH-----EAVITA---LPP 135
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
NR FL +CL DLD L+ GG+L + G P + ++L ++ AY
Sbjct: 49 NRAAFLADCLGDLDAGLRERGGRLVVRAGDPAQVVRELVGSTGAERVHVAAGVSAY 104
>gi|409728146|ref|ZP_11271017.1| deoxyribodipyrimidine photolyase [Halococcus hamelinensis 100A6]
gi|448723116|ref|ZP_21705641.1| deoxyribodipyrimidine photolyase [Halococcus hamelinensis 100A6]
gi|445788071|gb|EMA38793.1| deoxyribodipyrimidine photolyase [Halococcus hamelinensis 100A6]
Length = 466
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 41/99 (41%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R FLL+ L L + GG L + G P +L E + + D L
Sbjct: 39 HAGPARVAFLLDSLDALREDYRDRGGGLVVAHGDPAEELPRLADEHGAEAVFWNHDYTGL 98
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+RD++V+ + +I + F +P + +G+
Sbjct: 99 ARERDRRVESALDDADIDHETFHDAVHHEPGAITTNDGD 137
>gi|389848325|ref|YP_006350564.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
gi|448618531|ref|ZP_21666768.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
gi|388245631|gb|AFK20577.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
gi|445746902|gb|ELZ98360.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
Length = 482
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R R++L+ LA+L +S G L + G P ++ + L + + D +
Sbjct: 40 HAGSPRVRYMLDALAELRASYQSLGSDLLVAHGDPKAVVPAVAAALEADGVVWNTDYSGV 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLH 116
+RD V+ + +++ E V ++ P I TN P Y +Y +
Sbjct: 100 ARERDANVRSALDDASVSY-ESVHDAIFHPPGSITTNAGDP---YSVYTY 145
>gi|114798846|ref|YP_761758.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
gi|114739020|gb|ABI77145.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
Length = 536
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH-K 69
+F F+ + L +LD LK+ G +L I GS I +F L ++ + ++ W
Sbjct: 56 RQFDFVRDSLEELDAALKARGTKLVIRMGSAIDVFSALHQKHGIAAIHAHEETGLQWTFD 115
Query: 70 RDKKVKKWCAENNITVKE 87
RD+ V++W I+++E
Sbjct: 116 RDRAVRRWARNAGISLRE 133
>gi|159043774|ref|YP_001532568.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12]
gi|157911534|gb|ABV92967.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12]
Length = 514
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ ++ F EC+ADL R+L + G L I G +++ ++L+ T + ++ W
Sbjct: 48 VSARQWAFTRECVADLSRELAALGAPLRIETGEAVAVLERLRAAHGITLMISHEEIGNGW 107
Query: 68 -HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+ RD+ V W + +E VV + NG
Sbjct: 108 TYARDRAVADWARAQGVAWEELAQSG-----VVRRLNGR 141
>gi|413955779|gb|AFW88428.1| hypothetical protein ZEAMMB73_274298 [Zea mays]
Length = 396
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R FLL+ +ADL R L++ GG L + G P + +L R + +
Sbjct: 157 GPYRANFLLDSVADLRRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVSRDEV 216
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLW 94
+ +++V+K + I VK F TL+
Sbjct: 217 RTEERVQKAVEKEGINVKYFWGSTLY 242
>gi|352095147|ref|ZP_08956250.1| Deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8016]
gi|351679158|gb|EHA62300.1| Deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8016]
Length = 492
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FL+E L +L ++ + G +L +V G P+ + +L L + + +D E +RD
Sbjct: 56 RLWFLVETLRELQQRWRDVGSRLLVVAGDPVQVLPRLASLLEAPAVVWSRDVEPYSRERD 115
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT 117
++V K + V L P+ +I+T G P + +L
Sbjct: 116 RQVAKALQSDGRKVLVDWDQLLLAPD-LIKTGGGDPYRVFGPFLRN 160
>gi|120436173|ref|YP_861859.1| deoxyribodipyrimidine photo-lyase [Gramella forsetii KT0803]
gi|117578323|emb|CAL66792.1| deoxyribodipyrimidine photo-lyase [Gramella forsetii KT0803]
Length = 435
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 12 RFRFLLECLADLDRQLK-SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
R F+ E L ++ L+ HG + I +P +F+ L + K+ +D E +R
Sbjct: 52 RVTFIFEELQEMRSTLQEDHGSSIAIFYRTPEKVFKNLISDYEIEKVFTNRDYEPYAKER 111
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
D+K+ K + N+I ++F +++ + V++ +G+ P + Y Y
Sbjct: 112 DQKIAKILSGNDIEFEDFKDQVIFEKDEVVKKDGD-PYVVYTPY 154
>gi|452207964|ref|YP_007488086.1| deoxyribodipyrimidine photolyase [Natronomonas moolapensis 8.8.11]
gi|452084064|emb|CCQ37397.1| deoxyribodipyrimidine photolyase [Natronomonas moolapensis 8.8.11]
Length = 466
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 43/99 (43%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G +R FLL+ + L + G +L + G P S+ L +L + + +D L
Sbjct: 38 HAGASRVAFLLDAVGALRAAYRERGSELLVRAGDPASVVPNLAADLGAEFVSWNRDYSGL 97
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+RD++V + T ++F +P + G+
Sbjct: 98 ASERDERVDDALENVDATPQKFHDAVCHEPGSITTNAGD 136
>gi|409098421|ref|ZP_11218445.1| DASH family cryptochrome [Pedobacter agri PB92]
Length = 424
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT+ G R +F+LE + L LK GG L I +G+P I L +E T++ ++
Sbjct: 48 GTLKTGNIRAQFILESVLGLRASLKQIGGNLLIAEGNPEDIIPSLVQEYEITEVYHHREV 107
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
V+ + + +K F+ HTL++ E
Sbjct: 108 AREETHVSTLVENALWKLRVNLKHFIGHTLYNKE 141
Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL 175
GT+ G R +F+LE + L LK GG L I +G+P I L +E T++
Sbjct: 48 GTLKTGNIRAQFILESVLGLRASLKQIGGNLLIAEGNPEDIIPSLVQEYEITEV 101
>gi|163849034|ref|YP_001637078.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222527000|ref|YP_002571471.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
gi|163670323|gb|ABY36689.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222450879|gb|ACM55145.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
Length = 479
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R +FLL+CLA LD +L++ G L + +G P+ + RE + + + +D +RD
Sbjct: 49 RTQFLLDCLAALDAELRTFGLHLVVRRGDPLRTLFDVLRESGASGVTWNRDYTPYAVRRD 108
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+K+ E F +++ + V +G P Y Y
Sbjct: 109 TAIKQALREAGYEAHSFKDTVIFEMKEVATADGR-PYTVYTPY 150
Score = 39.3 bits (90), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
R +FLL+CLA LD +L++ G L + +G P+ + RE + + + +D Y
Sbjct: 49 RTQFLLDCLAALDAELRTFGLHLVVRRGDPLRTLFDVLRESGASGVTWNRDYTPY 103
>gi|212275814|ref|NP_001131008.1| uncharacterized LOC100192113 [Zea mays]
gi|194690696|gb|ACF79432.1| unknown [Zea mays]
gi|194701496|gb|ACF84832.1| unknown [Zea mays]
gi|414866740|tpg|DAA45297.1| TPA: photolyase/blue-light receptor PHR2 [Zea mays]
Length = 446
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
G R FLL+ +ADL R L++ GG L + G P + +L R + +
Sbjct: 155 RTGPYRANFLLDSVADLRRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVSRD 214
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLW 94
+ +++V+K + I VK F TL+
Sbjct: 215 EVRAEERVQKAVEKEGINVKYFWGSTLY 242
>gi|313126193|ref|YP_004036463.1| deoxyribodipyrimidine photo-lyase type i [Halogeometricum
borinquense DSM 11551]
gi|448286034|ref|ZP_21477270.1| deoxyribodipyrimidine photolyase [Halogeometricum borinquense DSM
11551]
gi|312292558|gb|ADQ67018.1| deoxyribodipyrimidine photo-lyase type I [Halogeometricum
borinquense DSM 11551]
gi|445575333|gb|ELY29809.1| deoxyribodipyrimidine photolyase [Halogeometricum borinquense DSM
11551]
Length = 469
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
H G R RF+L+ LA L + L +V+G P +L E + + + +D
Sbjct: 39 AHAGAARVRFMLDALARLRETYRERDSDLVVVRGDPTEELPRLAAEYDADGVVWNKDYSR 98
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLH 116
L RD+ V++ E + + V + I TN P Y +Y +
Sbjct: 99 LARTRDEAVRRALDEAGV-AHDAVHDAIHHEPGSITTNAGDP---YSVYTY 145
>gi|300778354|ref|ZP_07088212.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
ATCC 35910]
gi|300503864|gb|EFK35004.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
ATCC 35910]
Length = 431
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R ++ + L D++ LK + +L G PI IF+KL E + + +D E +RD
Sbjct: 53 RVDYIHQALTDINISLKKYHSKLNTYYGKPIEIFRKLSEEYDIESVFCNRDYEPQAIERD 112
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
K++ + E I K ++D + +++ +G P Y Y
Sbjct: 113 KEIYYFFTEKKIPFKACKDQVIFDKDQIVKKDG-TPYTVYTPY 154
>gi|242040969|ref|XP_002467879.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor]
gi|241921733|gb|EER94877.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor]
Length = 447
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
G R FLL+ +ADL R L++ GG L + G P + +L R + +
Sbjct: 156 RTGPYRANFLLDSVADLRRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVSRD 215
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLW 94
+ +++V+K + I VK F TL+
Sbjct: 216 EVRAEERVQKAVEKEGINVKYFWGSTLY 243
>gi|81298923|ref|YP_399131.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
gi|79621|pir||S00757 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [validated] -
Synechococcus sp. (Anacystis nidulans)
gi|48425154|pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
gi|48425155|pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
gi|48425156|pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
gi|48425157|pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
gi|48425158|pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
gi|157833609|pdb|1QNF|A Chain A, Structure Of Photolyase
gi|580717|emb|CAA30190.1| unnamed protein product [Synechococcus elongatus PCC 6301]
gi|81167804|gb|ABB56144.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
Length = 484
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
+ + R +L CL +L ++ + G +L ++QG P + +L ++L + + QD E
Sbjct: 44 SADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIE 103
Query: 65 ALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
RD +V I + L P+ ++ +GN Y +Y
Sbjct: 104 PYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGN----PYSVY 149
Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 123 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
+ + R +L CL +L ++ + G +L ++QG P + +L ++L + + QD E
Sbjct: 44 SADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIE 103
Query: 183 AY 184
Y
Sbjct: 104 PY 105
>gi|56751401|ref|YP_172102.1| DNA photolyase [Synechococcus elongatus PCC 6301]
gi|118595452|sp|P05327.4|PHR_SYNP6 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|56686360|dbj|BAD79582.1| DNA photolyase [Synechococcus elongatus PCC 6301]
Length = 484
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
+ + R +L CL +L ++ + G +L ++QG P + +L ++L + + QD E
Sbjct: 44 SADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIE 103
Query: 65 ALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
RD +V I + L P+ ++ +GN Y +Y
Sbjct: 104 PYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGN----PYSVY 149
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 123 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
+ + R +L CL +L ++ + G +L ++QG P + +L ++L + + QD E
Sbjct: 44 SADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIE 103
Query: 183 AY 184
Y
Sbjct: 104 PY 105
>gi|163756034|ref|ZP_02163150.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1]
gi|161323908|gb|EDP95241.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1]
Length = 433
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ E L ++ L+SH + + G P+ + +++ + + + D E RD
Sbjct: 52 RVTFIYEELEKINTTLQSHDASILVKHGKPLEVLEEIIGKHEISAVYTNHDYEPYAIARD 111
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
K+V + A NI K + +++ V++ +G+ P + Y Y
Sbjct: 112 KEVGELLASKNIEFKTYKDQVIFERNEVVKADGD-PYIIYTPY 153
>gi|113954039|ref|YP_729488.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311]
gi|113881390|gb|ABI46348.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311]
Length = 492
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FL+E L +L ++ + G +L +V G P+ + +L L + + +D E +RD
Sbjct: 56 RLWFLVESLRELQQRWRDVGSRLLVVAGDPVQLLPRLASLLEAPAVVWSRDVEPYARERD 115
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT 117
++V K + V L P+ +I+T G P + +L
Sbjct: 116 RQVAKALQADGCKVLVDWDQLLLAPD-LIKTGGGDPYRVFGPFLRN 160
>gi|170691102|ref|ZP_02882268.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M]
gi|170144351|gb|EDT12513.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M]
Length = 493
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+L L +LD L++ GG L ++ G P + KL EL + D E +RD
Sbjct: 65 RVEFILASLRELDDALRAQGGGLIVLYGDPADLVPKLADELRVDAVFANHDYEPAAIERD 124
Query: 72 KKVKKWCAE 80
+ V++ AE
Sbjct: 125 ETVRERLAE 133
>gi|58176791|pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176792|pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176793|pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176794|pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
+ + R +L CL +L ++ + G +L ++QG P + +L ++L + + QD E
Sbjct: 43 SADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIE 102
Query: 65 ALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
RD +V I + L P+ ++ +GN Y +Y
Sbjct: 103 PYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGN----PYSVY 148
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 123 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
+ + R +L CL +L ++ + G +L ++QG P + +L ++L + + QD E
Sbjct: 43 SADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIE 102
Query: 183 AY 184
Y
Sbjct: 103 PY 104
>gi|428213303|ref|YP_007086447.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoria acuminata PCC 6304]
gi|428001684|gb|AFY82527.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoria acuminata PCC 6304]
Length = 486
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +A+L + L++ G L I G P I ++ ++N + + F Q
Sbjct: 50 FPKT---GPFRAQFLLESVANLRQSLQNLGSNLIIKIGKPEVILPQIAHQVNASAIYFHQ 106
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ A + + + N+ +K F HTL+ + + N+P L
Sbjct: 107 EVTAEEIAVETALSQGVKSLNVALKSFWGHTLYHCDRLPFDIPNIPEL 154
>gi|344204249|ref|YP_004789392.1| deoxyribodipyrimidine photo-lyase [Muricauda ruestringensis DSM
13258]
gi|343956171|gb|AEM71970.1| Deoxyribodipyrimidine photo-lyase [Muricauda ruestringensis DSM
13258]
Length = 437
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 12 RFRFLLECLADLDRQLKS-HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
R F+ + + L+ QL + +G + SP ++F+KL ++ + D E KR
Sbjct: 52 RVTFIHKQIQKLNNQLSANYGSGIAQFHDSPKAVFKKLIQDYTVEAVYTNHDYEPYAKKR 111
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
D ++K+ +N+I K F +++ E V++ +G+ P + Y Y+
Sbjct: 112 DSQIKEILVQNDIPFKTFKDQVIFEKEEVVKDDGD-PYVVYTPYV 155
>gi|148238598|ref|YP_001223985.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803]
gi|147847137|emb|CAK22688.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803]
Length = 492
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FL+E L +L ++ + G +L +V G P+ +L L + + +D E +RD
Sbjct: 56 RLWFLVESLVELQQRWRDAGSRLLVVAGDPVQRLPQLASLLEAAAVVWSRDVEPYARERD 115
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT 117
++V + + V L PE +++T G P Y +L
Sbjct: 116 RQVARALQASGRKVLVDWDQLLVAPE-LLKTGGGDPYRVYGPFLRN 160
>gi|157412732|ref|YP_001483598.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
9215]
gi|157387307|gb|ABV50012.1| Deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
9215]
Length = 497
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC-EALWHKR 70
+++F E + DL LK G L I G+ I+IF+++ + N + Q+ + + +KR
Sbjct: 50 QWQFCKESVLDLRNSLKEIGQPLIIRTGNVINIFEEISSKFNVVGIYSHQETGDWVTYKR 109
Query: 71 DKKVKKWCAENNITVKEFVSHTL 93
DK+VK W A I +EF+ ++
Sbjct: 110 DKEVKLWAANKKIIWREFLQFSV 132
>gi|425701283|gb|AFX92445.1| deoxyribodipyrimidine photolyase [Megavirus courdo11]
Length = 471
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 11 NRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
N +F++E L DL+ Q+ +L+ G+ I + ++ + +N + + D
Sbjct: 55 NSIQFMIESLYDLNSQINFLDKKLRLWTTYGNEIDVIDEIHKNINVSAIYINDDYTPYSI 114
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
KRDKK++ +C + NI + L D + NGN
Sbjct: 115 KRDKKIQNYCDQQNIILNISTDILLTDTLDIAANNGN 151
>gi|257388282|ref|YP_003178055.1| DASH family cryptochrome [Halomicrobium mukohataei DSM 12286]
gi|257170589|gb|ACV48348.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286]
Length = 483
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60
MF G +G +R +FL+E LADL L+ G+L++ G P ++ + E + + ++
Sbjct: 45 MF-GLDRVGPHRAQFLIESLADLRESLRDRDGELYVRSGDPGTVVPEAAEEFDADAVYWQ 103
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLW 94
V+ A+ I + F +HTL+
Sbjct: 104 ALPGPEERDEAGSVRAGLADAGIDSETFWTHTLY 137
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%)
Query: 98 VVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQG 157
V + + VP L G +G +R +FL+E LADL L+ G+L++ G
Sbjct: 23 AVAEADTVVPLYCLPDRLTGEGMFGLDRVGPHRAQFLIESLADLRESLRDRDGELYVRSG 82
Query: 158 SPISIFQKLKRELNFTKLCFE 178
P ++ + E + + ++
Sbjct: 83 DPGTVVPEAAEEFDADAVYWQ 103
>gi|67925725|ref|ZP_00519034.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67852431|gb|EAM47881.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 486
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 20/125 (16%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE + DL + L+ G L I QG P I +L ++L + F +
Sbjct: 50 FPKT---GNFRGQFLLESVTDLKKSLQDLGSNLIIRQGYPEKIIPELIKQLEIDAVYFHE 106
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTL--WD---------PEVV------IQTNG 104
+ + + V+K N+T K F TL WD PEV ++ N
Sbjct: 107 EVTSEETDIENTVEKALKPLNVTFKGFWGATLYHWDDLPFEVSKLPEVFTSFRKKVEKNS 166
Query: 105 NVPPL 109
V P+
Sbjct: 167 TVNPI 171
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 118 VSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177
+ G G R +FLLE + DL + L+ G L I QG P I +L ++L + F
Sbjct: 45 TTSFGFPKTGNFRGQFLLESVTDLKKSLQDLGSNLIIRQGYPEKIIPELIKQLEIDAVYF 104
Query: 178 EQDCEA 183
++ +
Sbjct: 105 HEEVTS 110
>gi|254501390|ref|ZP_05113541.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
DFL-11]
gi|222437461|gb|EEE44140.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
DFL-11]
Length = 519
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HKRD 71
+ FL ECL DLD++L G L + GS + + L ++ W ++RD
Sbjct: 52 YAFLSECLQDLDQELSRLGKPLLLRTGSVTDVLTYISERYRIAGLWSHEETGNGWTYQRD 111
Query: 72 KKVKKWCAENNITVKE 87
K V WC N++ E
Sbjct: 112 KAVAAWCRANSVPWTE 127
>gi|182414480|ref|YP_001819546.1| deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1]
gi|177841694|gb|ACB75946.1| Deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1]
Length = 501
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
+L L LD ++ GG+L + +G P++ Q++ R + + + E RD +V
Sbjct: 65 WLHHSLEALDAAVRERGGRLILRRGDPLAELQEIVRATGAKGVYWNRRYEPAARARDARV 124
Query: 75 KKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+ A + VK F S L +PE ++ G
Sbjct: 125 QTELAAAGLDVKTFNSALLNEPETILNKQGG 155
>gi|448565094|ref|ZP_21636065.1| deoxyribodipyrimidine photolyase [Haloferax prahovense DSM 18310]
gi|445715753|gb|ELZ67506.1| deoxyribodipyrimidine photolyase [Haloferax prahovense DSM 18310]
Length = 482
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R R+LL+ LA+L + G L + +G P ++ + L+ + + D L
Sbjct: 40 HAGAPRVRYLLDALAELRGAYQERGSDLLVARGDPRAVVPAVAAALDAERATWAIDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLH 116
+RD V+ + + +E V ++ P I TN TY +Y +
Sbjct: 100 ARERDADVRLALDDAGV-AREPVHDAIFHPPGSITTNAGD---TYSVYTY 145
>gi|195651415|gb|ACG45175.1| photolyase/blue-light receptor PHR2 [Zea mays]
Length = 446
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
G R FLL+ +ADL R L++ GG L + G P + +L R + +
Sbjct: 155 RTGPYRANFLLDSVADLRRSLRARGGDLVVRVGMPEVVIPELARAAGAEAVYAHGEVSRD 214
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLW 94
+ +++V+K + I VK F TL+
Sbjct: 215 EVRAEERVQKAVEKEGINVKYFWGSTLY 242
>gi|428203429|ref|YP_007082018.1| DASH family cryptochrome [Pleurocapsa sp. PCC 7327]
gi|427980861|gb|AFY78461.1| cryptochrome, DASH family [Pleurocapsa sp. PCC 7327]
Length = 488
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 23/178 (12%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FL E +ADL L+ G L + G P I L +ELN + + +
Sbjct: 50 FPKT---GKFRAQFLRESVADLRNSLQKLGSNLIVRLGFPEKIIPALAQELNIDAVYYHE 106
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
+ + +K +KK ++ + V F TL+ P+ N+P +H + +
Sbjct: 107 EVTSEELAVEKSLKKALSQIGVKVNSFWGATLYHPD-------NLP-----FKIHQIPEL 154
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179
+ FR LE + +D L S + + P I Q L EL +L F++
Sbjct: 155 ------FTNFRKQLEKKSTIDPTLPSPQKLPPLPKVEPGEIPQLL--ELGIEELIFDE 204
>gi|166363455|ref|YP_001655728.1| DNA photolyase [Microcystis aeruginosa NIES-843]
gi|166085828|dbj|BAG00536.1| DNA photolyase [Microcystis aeruginosa NIES-843]
Length = 474
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +LL CL +L++ G QL I++G+P L L+ + F D E
Sbjct: 47 IAPARVAYLLGCLEELEKNYHQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVI 100
+RD++V I V+ F L P V+
Sbjct: 107 RQRDQQVIAALQTKGIEVETFWDQLLHAPGQVL 139
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
I R +LL CL +L++ G QL I++G+P L L+ + F D E Y
Sbjct: 47 IAPARVAYLLGCLEELEKNYHQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPY 105
>gi|448381750|ref|ZP_21561726.1| deoxyribodipyrimidine photolyase [Haloterrigena thermotolerans DSM
11522]
gi|445662831|gb|ELZ15594.1| deoxyribodipyrimidine photolyase [Haloterrigena thermotolerans DSM
11522]
Length = 468
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R LLE L DL Q + G L +V+G ++ ++ E + T + + +D L
Sbjct: 41 HASPVRVATLLEALEDLRSQYRERGSDLLVVRGEASAVVPEVAAEYDATTVVWNEDYSGL 100
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+RD+ V+ + I + +P + G+
Sbjct: 101 ARERDRAVRAALEDEGIAAESVHDAIHHEPGSITPNQGD 139
>gi|443288138|ref|ZP_21027232.1| Deoxyribodipyrimidine photo-lyase [Micromonospora lupini str. Lupac
08]
gi|385881715|emb|CCH22325.1| Deoxyribodipyrimidine photo-lyase [Micromonospora lupini str. Lupac
08]
Length = 441
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P + NR RFL + LADL L+ GG L + +G P++ +L E+ T + D
Sbjct: 40 PALAGLSANRTRFLHQALADLRDALRERGGDLVVRRGDPVAETIRLAGEVGATAVALSAD 99
Query: 63 CE 64
Sbjct: 100 VS 101
Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
NR RFL + LADL L+ GG L + +G P++ +L E+ T + D
Sbjct: 48 NRTRFLHQALADLRDALRERGGDLVVRRGDPVAETIRLAGEVGATAVALSADVS 101
>gi|71909505|ref|YP_287092.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica
RCB]
gi|71849126|gb|AAZ48622.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica
RCB]
Length = 470
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ E L +LD L++ GG L I G + L R L + + +D E +RD
Sbjct: 53 RVHFIRESLVELDAALRARGGGLIIRHGQAVDEIPALARRLGVSAVFTNRDYEPSAKRRD 112
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNV 106
+V + ++I ++D + V+ G
Sbjct: 113 AQVARQLRNDDIAFHGVKDQAIFDGDEVLTQAGKA 147
>gi|408491999|ref|YP_006868368.1| deoxyribodipyrimidine photolyase PhrB-like protein [Psychroflexus
torquis ATCC 700755]
gi|408469274|gb|AFU69618.1| deoxyribodipyrimidine photolyase PhrB-like protein [Psychroflexus
torquis ATCC 700755]
Length = 485
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE-A 65
H FRF+ E L D+ +QL+++ Q+ IV+G+ +F+ + ++L + Q+
Sbjct: 44 HYSERHFRFIKESLRDIQKQLEAYHTQVLIVEGNAEDVFKTIHQQLTIKSVFSHQETGLQ 103
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSH 91
+ KRDK +K +I KEFV++
Sbjct: 104 ITFKRDKNLKLLFKSLSIQWKEFVNN 129
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 36/69 (52%)
Query: 113 MYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 172
+Y+ + H FRF+ E L D+ +QL+++ Q+ IV+G+ +F+ + ++L
Sbjct: 32 LYIFEPILLKDSHYSERHFRFIKESLRDIQKQLEAYHTQVLIVEGNAEDVFKTIHQQLTI 91
Query: 173 TKLCFEQDC 181
+ Q+
Sbjct: 92 KSVFSHQET 100
>gi|448357813|ref|ZP_21546508.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
gi|445648121|gb|ELZ01083.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
Length = 466
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 28/160 (17%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+LE L++L + G L + G P ++ RE + + + +D L KRD
Sbjct: 45 RVAFMLESLSELRAWYRERGSDLVVATGDPRDELPRIAREHDAESVSWNRDYSGLASKRD 104
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRF 131
+ V++ + + L++P + G TY +Y + + ++
Sbjct: 105 EAVREALTDAGLEATSVDDALLFEPGSITTQQGE----TYAVYSYF----------WKKW 150
Query: 132 RFLLECLADLDRQLKS-----HGGQLFIVQGSPISIFQKL 166
R DR+ +S +G QL V G P+ + L
Sbjct: 151 R---------DREKESPVPAPNGEQLASVSGDPLPSQEAL 181
>gi|256425909|ref|YP_003126562.1| deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588]
gi|256040817|gb|ACU64361.1| Deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588]
Length = 434
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + L DL +L G L + G+P F+ RE + ++ D E KRD
Sbjct: 53 RVTFIHDILEDLQEKLSKLGSTLDVFYGTPQQAFEHYTREYDVQEVFTNIDYEPYAVKRD 112
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+ K NI + H ++D V++ NG
Sbjct: 113 SDIAKILKAKNIHFHLYKDHVIFDHSEVLKDNG 145
>gi|448470029|ref|ZP_21600376.1| deoxyribodipyrimidine photolyase [Halorubrum kocurii JCM 14978]
gi|445808474|gb|EMA58540.1| deoxyribodipyrimidine photolyase [Halorubrum kocurii JCM 14978]
Length = 510
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R R LL+ LA L + + G L + +G P + +L L+ ++ + +D L
Sbjct: 40 HASDVRVRRLLDGLAALRAEYRDRGSDLLVARGDPEVVLPELAAALDAERVVWNRDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSH--TLWDPEVVIQTNGNVPPLTYKMY 114
+RD V+ A N V H L P+ I+TN P Y Y
Sbjct: 100 ARERDAAVR--TALNGAGVDREAHHDAVLHTPD-SIRTNAGDPYSVYTYY 146
>gi|333028704|ref|ZP_08456768.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
Tu6071]
gi|332748556|gb|EGJ78997.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
Tu6071]
Length = 481
Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 3 PGTMHIGY---NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59
PG +G+ NR FL +CL DLD L+ GG+L + G P + ++L ++
Sbjct: 64 PGIKKVGFHAANRAAFLADCLGDLDAGLRERGGRLVVRAGEPAQVVRELVGSTGAERVHV 123
Query: 60 EQDCEALWHKRDKKVKKWCAENNITVKEFVSH 91
A R +++ A T E V H
Sbjct: 124 AAGVSAYARNRADRLR---AALEGTGAELVEH 152
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 118 VSCIGTMHIGY---NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174
V G +G+ NR FL +CL DLD L+ GG+L + G P + ++L +
Sbjct: 61 VRDPGIKKVGFHAANRAAFLADCLGDLDAGLRERGGRLVVRAGEPAQVVRELVGSTGAER 120
Query: 175 LCFEQDCEAY 184
+ AY
Sbjct: 121 VHVAAGVSAY 130
>gi|302517648|ref|ZP_07269990.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78]
gi|302426543|gb|EFK98358.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78]
Length = 455
Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 3 PGTMHIGY---NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59
PG +G+ NR FL +CL DLD L+ GG+L + G P + ++L ++
Sbjct: 38 PGIKKVGFHAANRAAFLADCLGDLDAGLRERGGRLVVRAGDPAQVVRELVGSTGAERVHV 97
Query: 60 EQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPP 108
A R +++ A T E V H E VI +PP
Sbjct: 98 AAGVSAYARNRADRLR---AALEGTGAELVEH-----EAVITA---LPP 135
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 118 VSCIGTMHIGY---NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174
V G +G+ NR FL +CL DLD L+ GG+L + G P + ++L +
Sbjct: 35 VRDPGIKKVGFHAANRAAFLADCLGDLDAGLRERGGRLVVRAGDPAQVVRELVGSTGAER 94
Query: 175 LCFEQDCEAY 184
+ AY
Sbjct: 95 VHVAAGVSAY 104
>gi|318058735|ref|ZP_07977458.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actG]
Length = 455
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 3 PGTMHIGY---NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59
PG +G+ NR FL +CL DLD L+ GG+L + G P + ++L ++
Sbjct: 38 PGIKKVGFHAANRAAFLADCLGDLDAGLRERGGRLVVRAGDPAQVVRELVGSTGAERVHV 97
Query: 60 EQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPP 108
A R +++ A T E V H E VI +PP
Sbjct: 98 AAGVSAYARNRADRLR---AALEGTGAELVEH-----EAVITA---LPP 135
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 118 VSCIGTMHIGY---NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174
V G +G+ NR FL +CL DLD L+ GG+L + G P + ++L +
Sbjct: 35 VRDPGIKKVGFHAANRAAFLADCLGDLDAGLRERGGRLVVRAGDPAQVVRELVGSTGAER 94
Query: 175 LCFEQDCEAY 184
+ AY
Sbjct: 95 VHVAAGVSAY 104
>gi|332668099|ref|YP_004450887.1| DNA photolyase FAD-binding protein [Haliscomenobacter hydrossis DSM
1100]
gi|332336913|gb|AEE54014.1| DNA photolyase FAD-binding protein [Haliscomenobacter hydrossis DSM
1100]
Length = 501
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL-CFEQDCEALWHKRD 71
+RF+ E LADL +LK QL+ V I++ + + ++ E+ + RD
Sbjct: 54 WRFVFESLADLQNRLKIREKQLYAVHQEVITVLEWITDFYQIQQVYSHEEVGIKITFDRD 113
Query: 72 KKVKKWCAENNITVKEF 88
K VKKWC E I +EF
Sbjct: 114 KAVKKWCTEQGIAYQEF 130
>gi|408682677|ref|YP_006882504.1| Deoxyribodipyrimidine photolyase [Streptomyces venezuelae ATCC
10712]
gi|328887006|emb|CCA60245.1| Deoxyribodipyrimidine photolyase [Streptomyces venezuelae ATCC
10712]
Length = 457
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 113 MYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 172
+++ + H NR FL +CLA LD L+ GG+L + G P++ + RE +
Sbjct: 33 LFVRDPAVARAGHAAPNRDAFLADCLAALDSALRERGGRLVVRSGDPVAEVCAVVREADA 92
Query: 173 TKLCFEQDCEAY 184
++ C +
Sbjct: 93 DEVHMAAGCSGF 104
Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
H NR FL +CLA LD L+ GG+L + G P++ + RE + ++ C
Sbjct: 45 HAAPNRDAFLADCLAALDSALRERGGRLVVRSGDPVAEVCAVVREADADEVHMAAGC 101
>gi|85711300|ref|ZP_01042359.1| putative deoxyribodipyrimidine photolyase [Idiomarina baltica
OS145]
gi|85694801|gb|EAQ32740.1| putative deoxyribodipyrimidine photolyase [Idiomarina baltica
OS145]
Length = 483
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H +RF++E + D++R+LK++ Q+++ G + Q ++ + L Q+ L
Sbjct: 45 HYDERHWRFIVESIRDINRKLKAYNTQIYVTYGDTVEQLQIWHQQFSIESLYSHQEVGLL 104
Query: 67 -WHKRDKKVKKWCAENNI 83
RDK+V WC ++++
Sbjct: 105 NTFDRDKQVASWCRQHHV 122
>gi|402820901|ref|ZP_10870463.1| deoxyribodipyrimidine photolyase [alpha proteobacterium IMCC14465]
gi|402510305|gb|EJW20572.1| deoxyribodipyrimidine photolyase [alpha proteobacterium IMCC14465]
Length = 516
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HKRDKK 73
FL LA+L + S G L + G ++ LK+ + + ++ W ++RDK+
Sbjct: 54 FLETSLAELRKDCASLGMPLIVRAGDVCAVLADLKQTFDLQAVYAHEETGNGWTYERDKR 113
Query: 74 VKKWCAENNITVKEFVSHTL 93
V +WC +NNI EF S+ +
Sbjct: 114 VLRWCRDNNIQFNEFPSNGV 133
>gi|170079382|ref|YP_001736020.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
gi|169887051|gb|ACB00765.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
Length = 477
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ R ++LL CLA+L + G QL I QG+P+ + K+ L + + D E
Sbjct: 47 VAPARVKYLLACLAELAENYQKAGSQLLIFQGNPLEVLPKVAESLKVHTVYWNLDVEPYA 106
Query: 68 HKRDKKV 74
+RD ++
Sbjct: 107 QQRDHQM 113
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+ R ++LL CLA+L + G QL I QG+P+ + K+ L + + D E Y
Sbjct: 47 VAPARVKYLLACLAELAENYQKAGSQLLIFQGNPLEVLPKVAESLKVHTVYWNLDVEPY 105
>gi|37520404|ref|NP_923781.1| cryptochrome [Gloeobacter violaceus PCC 7421]
gi|81834455|sp|Q7NMD1.1|CRYD_GLOVI RecName: Full=Cryptochrome DASH
gi|35211397|dbj|BAC88776.1| phrA [Gloeobacter violaceus PCC 7421]
Length = 500
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF--EQ 61
G G R RFLLE +ADL R L+ G L + +G P + L EL + + E
Sbjct: 49 GFEKTGPFRARFLLESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEV 108
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
E L +RD + A N+ V+ F TL P+
Sbjct: 109 TSEELVVERDLQAA--LAPLNVPVRSFWGTTLVHPD 142
>gi|335042827|ref|ZP_08535854.1| deoxyribodipyrimidine photolyase [Methylophaga aminisulfidivorans
MP]
gi|333789441|gb|EGL55323.1| deoxyribodipyrimidine photolyase [Methylophaga aminisulfidivorans
MP]
Length = 500
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ Y +F FL ECL L+ L G L + G +SI + L+++ N T L Q+ W
Sbjct: 43 MSYRQFAFLKECLYQLNEALSVLGCPLIVKVGDAVSILESLRQKYNVTSLWSYQETWNGW 102
Query: 68 -HKRDKKVKKWCAENNITVKEFVSH 91
++RD V+ W ++ + + H
Sbjct: 103 TYQRDIAVQHWADKHQLNWHQPRQH 127
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 96 PEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV 155
P + G + P+ Y+ + + Y +F FL ECL L+ L G L +
Sbjct: 17 PLTLAAAQGPILPV----YIFEPALWSQPDMSYRQFAFLKECLYQLNEALSVLGCPLIVK 72
Query: 156 QGSPISIFQKLKRELNFTKLCFEQDC 181
G +SI + L+++ N T L Q+
Sbjct: 73 VGDAVSILESLRQKYNVTSLWSYQET 98
>gi|379733707|ref|YP_005327212.1| Deoxyribodipyrimidine photo-lyase type I (fragment), partial
[Blastococcus saxobsidens DD2]
gi|378781513|emb|CCG01163.1| Deoxyribodipyrimidine photo-lyase type I (fragment) [Blastococcus
saxobsidens DD2]
Length = 199
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R RFLL+CLA LD L GG L + G P + L E T + D
Sbjct: 48 GAPRRRFLLDCLAALDDDL---GGALVLRSGDPTRLLPALVHEAGATSVHVSADAGPYGR 104
Query: 69 KRDKKVKK 76
+RD+ V++
Sbjct: 105 RRDEAVER 112
>gi|116787609|gb|ABK24574.1| unknown [Picea sitchensis]
gi|224284157|gb|ACN39815.1| unknown [Picea sitchensis]
Length = 526
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
G R FLLEC+A+L L+ G L + G P + +L + + L Q+
Sbjct: 237 TGPFRATFLLECVANLRANLRERGSDLVVRIGRPEEVLVELAKSIGADALYAHQEVSHEE 296
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
++K+K E + K F TL+ PE
Sbjct: 297 IATEEKIKSSLEEEGVETKFFWGSTLYHPE 326
>gi|325103845|ref|YP_004273499.1| deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145]
gi|324972693|gb|ADY51677.1| Deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145]
Length = 448
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + L+D+ ++L + L + G PI +F +L + +D E RD
Sbjct: 67 RVDFIHQVLSDMKKELDAINSSLLVEYGDPIDVFSELIDRFTIKAIYTNRDYEPTAIARD 126
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+ VKK I K F +++ +++ +G+
Sbjct: 127 ESVKKLVESKGIAFKTFKDQCIFEQSEIVKDDGS 160
>gi|302793095|ref|XP_002978313.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
gi|300154334|gb|EFJ20970.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
Length = 345
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R +FL+EC+A+L L+ G +L + G+P+ + + + + L Q+ +
Sbjct: 70 GPYRAKFLVECVANLRDNLRERGSELVVRIGNPVEVLSTIAKAVGADGLYAHQEVSSEEL 129
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLW 94
+ KV + N+ VK F TL+
Sbjct: 130 GMEDKVTSALKDQNVDVKFFWGSTLF 155
>gi|302765677|ref|XP_002966259.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
gi|300165679|gb|EFJ32286.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
Length = 345
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R +FL+EC+A+L L+ G +L + G+P+ + + + + L Q+ +
Sbjct: 70 GPYRAKFLVECVANLRDNLRERGSELVVRIGNPVEVLSTIAKAVGADGLYAHQEVSSEEL 129
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLW 94
+ KV + N+ VK F TL+
Sbjct: 130 GMEDKVTSALKDQNVDVKFFWGSTLF 155
>gi|375014151|ref|YP_004991139.1| deoxyribodipyrimidine photolyase [Owenweeksia hongkongensis DSM
17368]
gi|359350075|gb|AEV34494.1| deoxyribodipyrimidine photolyase [Owenweeksia hongkongensis DSM
17368]
Length = 435
Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 12 RFRFLLECLADLDRQLKS-HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
R F+ + + + + L+ HG L + GSP+ IF+ L E ++ +D E +R
Sbjct: 54 RVHFIWQEVKSIKKTLEEKHGTSLLVKHGSPLKIFKDLVSEFPVAEVFTNRDYEPSAKER 113
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
DK V ++ +I K F ++D V++ +G
Sbjct: 114 DKAVYEFLKSKDIVFKGFKDQVIFDKSEVMKEDG 147
>gi|56707953|ref|YP_169849.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670424|ref|YP_666981.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis FSC198]
gi|254370442|ref|ZP_04986447.1| hypothetical protein FTBG_00211 [Francisella tularensis subsp.
tularensis FSC033]
gi|254874757|ref|ZP_05247467.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379717195|ref|YP_005305531.1| Deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis TIGB03]
gi|379725799|ref|YP_005317985.1| Deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis TI0902]
gi|385794604|ref|YP_005831010.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis NE061598]
gi|421755482|ref|ZP_16192426.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 80700075]
gi|56604445|emb|CAG45479.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320757|emb|CAL08862.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis FSC198]
gi|151568685|gb|EDN34339.1| hypothetical protein FTBG_00211 [Francisella tularensis subsp.
tularensis FSC033]
gi|254840756|gb|EET19192.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159139|gb|ADA78530.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis NE061598]
gi|377827248|gb|AFB80496.1| Deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis TI0902]
gi|377828872|gb|AFB78951.1| Deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis TIGB03]
gi|409088037|gb|EKM88120.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 80700075]
Length = 499
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ + ++ FL ECL +L+ +L G L I+ G + IF++L ++ N + Q+ W
Sbjct: 43 MSHRQYLFLSECLEELNTELTKLGQSLAIMLGDAVEIFEQLIQKYNIKNVWSHQETWNDW 102
Query: 68 -HKRDKKVKKWCAENNIT 84
++RD K++K+ +NNI
Sbjct: 103 TYQRDIKLEKFFKQNNIV 120
>gi|134302253|ref|YP_001122222.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421759522|ref|ZP_16196354.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70102010]
gi|134050030|gb|ABO47101.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409090903|gb|EKM90911.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70102010]
Length = 499
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ + ++ FL ECL +L+ +L G L I+ G + IF++L ++ N + Q+ W
Sbjct: 43 MSHRQYLFLSECLEELNTELTKLGQSLAIMLGDAVEIFEQLIQKYNIKNVWSHQETWNDW 102
Query: 68 -HKRDKKVKKWCAENNIT 84
++RD K++K+ +NNI
Sbjct: 103 TYQRDIKLEKFFKQNNIV 120
>gi|257059330|ref|YP_003137218.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
gi|256589496|gb|ACV00383.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
Length = 481
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +LL CL +L + + G L +QG P I +L L+ + + D E
Sbjct: 47 IAPARIAYLLGCLQELQQTYQKLGSNLLFIQGEPSHIIPQLAAVLDAEAVFWNLDVEPYS 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD++V + E I + + L P ++ +G YK+Y
Sbjct: 107 QRRDEQVIQALKEQGIKTQTYWDQLLHYPGEIVTKSGE----PYKVY 149
>gi|254372340|ref|ZP_04987831.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570069|gb|EDN35723.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3549]
Length = 499
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ + ++ FL ECL +L+ +L G L I+ G + IF++L ++ N + Q+ W
Sbjct: 43 MSHRQYLFLSECLEELNTELTKLGQSLAIMLGDAVEIFEQLIQKYNIKNVWSHQETWNNW 102
Query: 68 -HKRDKKVKKWCAENNIT 84
++RD K++K+ +NNI
Sbjct: 103 TYQRDIKLEKFFKQNNIV 120
>gi|385792299|ref|YP_005825275.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676445|gb|AEB27315.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1]
Length = 499
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ + ++ FL ECL +L+ +L G L I+ G + IF++L ++ N + Q+ W
Sbjct: 43 MSHRQYLFLSECLEELNTELTKLGQSLAIMLGDAVEIFEQLIQKYNIKNVWSHQETWNDW 102
Query: 68 -HKRDKKVKKWCAENNIT 84
++RD K++K+ +NNI
Sbjct: 103 TYQRDIKLEKFFKQNNIV 120
>gi|448666718|ref|ZP_21685363.1| deoxyribodipyrimidine photolyase [Haloarcula amylolytica JCM 13557]
gi|445771849|gb|EMA22905.1| deoxyribodipyrimidine photolyase [Haloarcula amylolytica JCM 13557]
Length = 465
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 43/99 (43%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R F+L+ L L + G L + +G P ++ L E + + +D L
Sbjct: 40 HAGPPRVAFMLDALDSLREWYRDRGSDLVVARGDPTAVIPDLAVEYGVDTVTWGKDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+RD V++ + ++ + + L +P + +G+
Sbjct: 100 ARERDAVVRQALDDADVAREAVQNAVLHEPGEITTNDGD 138
>gi|421752089|ref|ZP_16189124.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis AS_713]
gi|421753950|ref|ZP_16190937.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 831]
gi|421757672|ref|ZP_16194548.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 80700103]
gi|424674844|ref|ZP_18111758.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70001275]
gi|409085877|gb|EKM86003.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 831]
gi|409086093|gb|EKM86216.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis AS_713]
gi|409092153|gb|EKM92132.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 80700103]
gi|417434518|gb|EKT89468.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70001275]
Length = 499
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ + ++ FL ECL +L+ +L G L I+ G + IF++L ++ N + Q+ W
Sbjct: 43 MSHRQYLFLSECLEELNTELTKLGQSLAIMLGDAVEIFEQLIQKYNIKNVWSHQETWNDW 102
Query: 68 -HKRDKKVKKWCAENNIT 84
++RD K++K+ +NNI
Sbjct: 103 TYQRDIKLEKFFKQNNIV 120
>gi|208780423|ref|ZP_03247764.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTG]
gi|208743791|gb|EDZ90094.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTG]
Length = 499
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ + ++ FL ECL +L+ +L G L I+ G + IF++L ++ N + Q+ W
Sbjct: 43 MSHRQYLFLSECLEELNTELTKLGQSLAIMLGDAVEIFEQLIQKYNIKNVWSHQETWNDW 102
Query: 68 -HKRDKKVKKWCAENNIT 84
++RD K++K+ +NNI
Sbjct: 103 TYQRDIKLEKFFKQNNIV 120
>gi|254369039|ref|ZP_04985052.1| hypothetical protein FTAG_00881 [Francisella tularensis subsp.
holarctica FSC022]
gi|157121960|gb|EDO66130.1| hypothetical protein FTAG_00881 [Francisella tularensis subsp.
holarctica FSC022]
Length = 457
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ + ++ FL ECL +L+ +L G L I+ G + IF++L ++ N + Q+ W
Sbjct: 1 MSHRQYLFLSECLEELNTELTKLGQSLAIMLGDAVEIFEQLIQKYNIKNVWSHQETWNDW 60
Query: 68 -HKRDKKVKKWCAENNI 83
++RD K++K+ +NNI
Sbjct: 61 TYQRDIKLEKFFKQNNI 77
>gi|126695730|ref|YP_001090616.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
9301]
gi|126542773|gb|ABO17015.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
str. MIT 9301]
Length = 498
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC-EALWHKR 70
+++F E L DL L G L I G+ I+IF ++ + L Q+ + L +KR
Sbjct: 50 QWQFCKESLIDLRNALAEIGQPLIIRTGNVINIFDEISSKFKIKGLYSHQETGDWLTYKR 109
Query: 71 DKKVKKWCAENNITVKEFVSHTL 93
D+KV++W NI KEF+ ++
Sbjct: 110 DQKVREWALSKNIIWKEFLQFSV 132
>gi|187931260|ref|YP_001891244.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187712169|gb|ACD30466.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 499
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ + ++ FL ECL +L+ +L G L I+ G + IF++L ++ N + Q+ W
Sbjct: 43 MSHRQYLFLSECLEELNTELTKLGQSLAIMLGDAVEIFEQLIQKYNIKNVWSHQETWNDW 102
Query: 68 -HKRDKKVKKWCAENNIT 84
++RD K++K+ +NNI
Sbjct: 103 TYQRDIKLEKFFKQNNIV 120
>gi|410615192|ref|ZP_11326218.1| deoxyribodipyrimidine photo-lyase [Glaciecola psychrophila 170]
gi|410165276|dbj|GAC40107.1| deoxyribodipyrimidine photo-lyase [Glaciecola psychrophila 170]
Length = 503
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE-A 65
H +RF+ + L D+++QL QL I+QG ++ +L + L+ + Q+ +
Sbjct: 56 HYDIRHWRFIWQSLQDINQQLSPLNCQLLIMQGEATAVLSQLLKTLSIKHIYSHQEIGLS 115
Query: 66 LWHKRDKKVKKWCAENNITVKEF 88
+RDK V+ WC N I EF
Sbjct: 116 NTFERDKAVRVWCDLNAIRWSEF 138
>gi|335436625|ref|ZP_08559418.1| deoxyribodipyrimidine photo-lyase [Halorhabdus tiamatea SARL4B]
gi|334897588|gb|EGM35719.1| deoxyribodipyrimidine photo-lyase [Halorhabdus tiamatea SARL4B]
Length = 470
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 42/100 (42%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
H G R LLE +++L + G L + +G P ++ L E ++ + +D
Sbjct: 42 AHAGPPRVAALLEAVSELRDAYRERGSDLVVARGDPQTVLPTLADEFGAERVTWNRDYTR 101
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
L KRD V++ + + L +P + +G+
Sbjct: 102 LGRKRDAAVREALDDAGVERAAVHDAVLHEPGTIRTNDGD 141
>gi|440680804|ref|YP_007155599.1| deoxyribodipyrimidine photo-lyase type I [Anabaena cylindrica PCC
7122]
gi|428677923|gb|AFZ56689.1| deoxyribodipyrimidine photo-lyase type I [Anabaena cylindrica PCC
7122]
Length = 478
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +++ CL L ++ G QL I+QG+P+S+ L L + + D E
Sbjct: 47 IAPARVTYMIGCLQALQKRYNQAGSQLLILQGNPVSVIPDLAAALQAKAVFWNWDVEPYS 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWD 95
RD V E I +F++H WD
Sbjct: 107 QTRDIAVIDSLTEKGI---QFLNHN-WD 130
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
I R +++ CL L ++ G QL I+QG+P+S+ L L + + D E Y
Sbjct: 47 IAPARVTYMIGCLQALQKRYNQAGSQLLILQGNPVSVIPDLAAALQAKAVFWNWDVEPY 105
>gi|433602405|ref|YP_007034774.1| Deoxyribodipyrimidine photo-lyase [Saccharothrix espanaensis DSM
44229]
gi|407880258|emb|CCH27901.1| Deoxyribodipyrimidine photo-lyase [Saccharothrix espanaensis DSM
44229]
Length = 455
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R RF+ CL LD +L GG+L +V G P+ + ++ R + + + D
Sbjct: 78 GQPRVRFMFRCLRALDAKL---GGRLMVVSGDPVDVVPEVARSVGASTVHVSADAGPYGR 134
Query: 69 KRDKKVKK 76
+RD V++
Sbjct: 135 ERDAAVER 142
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
G R RF+ CL LD +L GG+L +V G P+ + ++ R + + + D Y
Sbjct: 78 GQPRVRFMFRCLRALDAKL---GGRLMVVSGDPVDVVPEVARSVGASTVHVSADAGPY 132
>gi|78778672|ref|YP_396784.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. MIT 9312]
gi|78712171|gb|ABB49348.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. MIT 9312]
Length = 478
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FL + L +L + G +L I +G P+ I +L + ++ + + + E RD
Sbjct: 51 RAWFLGDSLQELGNNWEKMGSRLVIEEGDPVLIIPQLAKTIDAKFVIWNKTIEPYEINRD 110
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRF 131
++KK E NI V E H L +P + N N P Y + + + Y++
Sbjct: 111 LQIKKNLKEKNIQVIESWDHLLVEPLKIFSGN-NKPYSVYGPFYKNLKSKMNLLGLYDQD 169
Query: 132 RFLLECLADLDRQLKSH 148
+ + + D+D +LK +
Sbjct: 170 KVIFQ-FKDIDNKLKEN 185
>gi|150025093|ref|YP_001295919.1| deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
psychrophilum JIP02/86]
gi|149771634|emb|CAL43108.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
psychrophilum JIP02/86]
Length = 428
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ E L+ + ++L+ G L + G P IF+KL E + D E KRD
Sbjct: 48 RVTFIHELLSKMQKKLQEKGKSLAVFYGKPSEIFEKLISENKVKTIYTNHDYEPYARKRD 107
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
K++ + A +NI +++ V + +G P + Y Y
Sbjct: 108 KELNQLFANHNIQFLTSKDQVIFEKSEVTKDDGK-PYIVYTPY 149
>gi|189346874|ref|YP_001943403.1| deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
gi|189341021|gb|ACD90424.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
Length = 473
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G NR+ +L L L+R L+ G+L ++ G P+ I L TK+ + + E
Sbjct: 49 GANRW-WLHHSLESLNRSLQ---GRLTLLMGDPLEILPALAASTGATKVYWNRCYEPWRI 104
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
RD ++K E IT + + LW+P V +++G
Sbjct: 105 SRDTRLKHKLREQGITAESYNGSMLWEPWEVHKSDGT 141
>gi|383450756|ref|YP_005357477.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium indicum
GPTSA100-9]
gi|380502378|emb|CCG53420.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium indicum
GPTSA100-9]
Length = 428
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + L ++ +LKS G L + G+P IF +L E + + D E KRD
Sbjct: 48 RVSFIHQELNKINLKLKSIGKSLALFYGTPEEIFNQLIAENSIEAVYANHDYEPAARKRD 107
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
K V + N I+ K +++ V++ +G+ P + Y Y
Sbjct: 108 KSVNELLKSNGISFKTCKDQVIFEKSEVVKEDGS-PYVVYTPY 149
>gi|320160751|ref|YP_004173975.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
gi|319994604|dbj|BAJ63375.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
Length = 466
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R +FL L LD L+ G QL I +G P++ +L +E ++ +D +RD
Sbjct: 47 RKQFLFSGLRQLDEDLRKRGSQLIIRRGEPLAELTRLIQETGAEEIVALEDYSPYARRRD 106
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+ + + + F T++ P +V++ +G+
Sbjct: 107 SHIAR-----ELPLHLFAGETVYPPSLVLKPDGS 135
>gi|110668379|ref|YP_658190.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
gi|109626126|emb|CAJ52578.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
Length = 478
Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R +++LE +A+L + L I +G P+SI +L + ++ + ++
Sbjct: 49 HDGNARVQYMLESIAELRSWYRDRDSDLLIARGDPVSILPELASTHDVDRVVWNREYSGF 108
Query: 67 WHKRDKKVKKWCAENNIT 84
RD++V E++I
Sbjct: 109 AQSRDQQVADALTEHDIA 126
>gi|89255766|ref|YP_513128.1| deoxyribodipyrimidine photolyase, partial [Francisella tularensis
subsp. holarctica LVS]
gi|254367212|ref|ZP_04983242.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
holarctica 257]
gi|290953050|ref|ZP_06557671.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
holarctica URFT1]
gi|423050086|ref|YP_007008520.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
holarctica F92]
gi|89143597|emb|CAJ78781.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
holarctica LVS]
gi|134253032|gb|EBA52126.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
holarctica 257]
gi|421950808|gb|AFX70057.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
holarctica F92]
Length = 201
Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ + ++ FL ECL +L+ +L G L I+ G + IF++L ++ N + Q+ W
Sbjct: 1 MSHRQYLFLSECLEELNTELTKLGQSLAIMLGDAVEIFEQLIQKYNIKNVWSHQETWNDW 60
Query: 68 -HKRDKKVKKWCAENNIT 84
++RD K++K+ +NNI
Sbjct: 61 TYQRDIKLEKFFKQNNIV 78
>gi|146297827|ref|YP_001192418.1| deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101]
gi|146152245|gb|ABQ03099.1| Deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101]
Length = 431
Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + L ++ +L + + I +G ++++ L E + + F +D E KRD
Sbjct: 53 RVSFIYDSLQKINNELNTFESSILIKKGKTTAVWKSLLSEFDIQNVFFNKDYEPFAIKRD 112
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY----LHTVSCIGT---- 123
+ ENN+ F H +++ + + + +G+ P Y Y L +GT
Sbjct: 113 TAICSLLKENNVECFSFKDHVIFEEKEITKADGS-PYTVYTPYKNKWLEKYHFLGTVPEC 171
Query: 124 ----MHIGYNRFRFLLECLADL 141
MH + + +F L ++
Sbjct: 172 DSSSMHSNFAKTKFSFPDLTEI 193
>gi|86608285|ref|YP_477047.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556827|gb|ABD01784.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 486
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R +FLLE LADL +QL+S G L I QG P + L +E + ++ +
Sbjct: 55 RGQFLLESLADLRQQLRSRGSDLVIRQGQPEQVIPTLAQEWGVEAVYAHEEVGTEEKEVA 114
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPE 97
V++ I ++ HTL+ PE
Sbjct: 115 AAVERALRSLGIRLQVDWGHTLYHPE 140
Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE 169
R +FLLE LADL +QL+S G L I QG P + L +E
Sbjct: 55 RGQFLLESLADLRQQLRSRGSDLVIRQGQPEQVIPTLAQE 94
>gi|372281898|ref|ZP_09517934.1| deoxyribodipyrimidine photo-lyase [Oceanicola sp. S124]
Length = 472
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCA 79
LA +LK G +L + G+P+ + + L +E + +++ + KRD +VK
Sbjct: 56 LAAFAARLKEKGSRLILRSGNPLEVLRDLAKETGAGAVYWQRLYDPAAIKRDSRVKTALR 115
Query: 80 ENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
E+ + + F H L++P V G YK+Y
Sbjct: 116 EDGLDAESFAGHLLFEPWTVETGQGGF----YKVY 146
>gi|448583039|ref|ZP_21646508.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
gi|445729996|gb|ELZ81588.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
Length = 482
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R R+LL+ LA+L + G L + +G P ++ + L+ + + D L
Sbjct: 40 HAGAPRVRYLLDALAELRGAYRERGSDLLVARGDPRAVVPAVAAALDAERATWGIDYSGL 99
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLH 116
+RD V+ + + +E V ++ P I TN TY +Y +
Sbjct: 100 ARERDADVRLALDDAGVG-REPVHDAIFHPPGSITTNAGD---TYSVYTY 145
>gi|422303261|ref|ZP_16390615.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
gi|389791796|emb|CCI12426.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
Length = 474
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +LL CL +L++ + G QL I+ G+P L L+ + F D E
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLLIICGNPSQTLVNLAGNLSAKAVFFNLDIEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVI 100
+RD++V I V+ F L P V+
Sbjct: 107 RQRDQQVIAALQTKGIEVETFWDQLLHAPGQVL 139
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
I R +LL CL +L++ + G QL I+ G+P L L+ + F D E Y
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLLIICGNPSQTLVNLAGNLSAKAVFFNLDIEPY 105
>gi|388494660|gb|AFK35396.1| unknown [Medicago truncatula]
Length = 456
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
G R FL+E ++DL + LK+ G L + G P ++ +L +E+ + ++
Sbjct: 167 TGPYRASFLIESISDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVYCHREVSHDE 226
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLW 94
K ++K++ E N+ VK F TL+
Sbjct: 227 VKMEEKIEGKMKEENVEVKYFWGSTLY 253
>gi|326493834|dbj|BAJ85379.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 448
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
G R FLL+ +ADL R L++ GG L + G P + +L R + +
Sbjct: 155 RTGPYRASFLLDSVADLRRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVSRD 214
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLW 94
+ ++KV K + + VK F TL+
Sbjct: 215 ECRTEEKVSKAIEKEGVEVKYFWGSTLY 242
>gi|428213636|ref|YP_007086780.1| deoxyribodipyrimidine photolyase [Oscillatoria acuminata PCC 6304]
gi|428002017|gb|AFY82860.1| deoxyribodipyrimidine photolyase [Oscillatoria acuminata PCC 6304]
Length = 479
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 40/98 (40%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +++L CLA+L G QLFI+ P +L L + + D E
Sbjct: 47 IAPARVKYMLGCLAELQENYAKIGSQLFILFDEPRQAIAQLATALQAQFVYWNLDIEPYS 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
RD+ V+ E I V+ F L P + GN
Sbjct: 107 QDRDQAVRSALKEQGIAVETFWDQLLHFPGEICSNTGN 144
>gi|254525619|ref|ZP_05137671.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
9202]
gi|221537043|gb|EEE39496.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
9202]
Length = 497
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC-EALWHKR 70
+++F E + DL LK G L I G+ I IF+++ + N + Q+ + + +KR
Sbjct: 50 QWQFCKESIIDLRNSLKEIGQPLIIRTGNVIKIFEEISSKFNIVGIYSHQETGDWVTYKR 109
Query: 71 DKKVKKWCAENNITVKEFVSHTL 93
D++VK W A I +EF+ ++
Sbjct: 110 DQEVKLWAANKKIIWREFLQFSV 132
>gi|425439515|ref|ZP_18819837.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
gi|389720241|emb|CCH96030.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
Length = 474
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +LL CL +L++ + G QL I+ G+P L L+ + F D E
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLLIICGNPSQTLVNLAGNLSAKAVFFNLDIEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVI 100
+RD++V I V+ F L P V+
Sbjct: 107 RQRDQQVIAALQTKGIEVETFWDQLLHAPGQVL 139
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
I R +LL CL +L++ + G QL I+ G+P L L+ + F D E Y
Sbjct: 47 IAPARVAYLLGCLEELEKNYRQKGSQLLIICGNPSQTLVNLAGNLSAKAVFFNLDIEPY 105
>gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1]
gi|300073971|gb|ADJ63370.1| deoxyribodipyrimidine photolyase (photoreactivation) protein
[Herbaspirillum seropedicae SmR1]
Length = 494
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FLL +A+LD L+ GG L ++ GS ++ L EL+ + D E +RD
Sbjct: 57 RIDFLLASVAELDEALRHAGGGLIVLHGSAVTQIPALAAELDVQAVYANTDYEPAAVERD 116
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
V + A++ + + +++ + V+ +
Sbjct: 117 AAVAQTLAKSGAQLLSYKDQVIFEKDEVLTQSA 149
>gi|168016051|ref|XP_001760563.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688260|gb|EDQ74638.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R FLLEC+A+L L+ G L + GSP ++ L + + L Q+
Sbjct: 228 GPYRANFLLECVANLRSSLRERGSDLIVRVGSPEAVLVDLAKSVGAEALYVHQEVTYEEL 287
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLW 94
+ ++KV E I K F TL+
Sbjct: 288 QAEEKVAAALQEKGIETKYFWGSTLF 313
>gi|399543593|ref|YP_006556901.1| Cryptochrome-like protein cry2 [Marinobacter sp. BSs20148]
gi|399158925|gb|AFP29488.1| Cryptochrome-like protein cry2 [Marinobacter sp. BSs20148]
Length = 500
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNF-TKLCFEQDC 63
H+ +RF++E ++D++ QLK G + +V G + ++L++ T E+
Sbjct: 50 HLSLRHWRFIIESISDMNNQLKRAGCEAGVTLVHGECVEALEQLQQHHRIHTLFSHEETG 109
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTL 93
+A +RD+K+ WC + +EF ++ +
Sbjct: 110 DASTFERDQKITHWCQQQGAHWQEFATNAV 139
>gi|257095136|ref|YP_003168777.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047660|gb|ACV36848.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 482
Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 38/98 (38%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R F+ E L +LD L++ GG L + G L R L + +D E
Sbjct: 46 HEADRRVEFIRESLVELDAALRTRGGALLVRHGWATREIPDLARGLGVAAVFVNRDYEPG 105
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+RD V + I + F + D + V+ G
Sbjct: 106 AKQRDAAVSAALKADGIAFESFKDQAILDGDEVLSQAG 143
>gi|356535153|ref|XP_003536113.1| PREDICTED: blue-light photoreceptor PHR2-like [Glycine max]
Length = 440
Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
G R FL++ ++DL R L++ G L + G P ++ +L + + + ++
Sbjct: 150 TGPYRAAFLIDSVSDLRRSLQARGSDLVVRVGKPETVLVELAKAVGADAVYAHREVSHDE 209
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLW 94
K ++KV+ E N+ VK F TL+
Sbjct: 210 AKAEEKVEAAMKEENVEVKYFWGSTLY 236
>gi|390945121|ref|YP_006408882.1| deoxyribodipyrimidine photolyase [Belliella baltica DSM 15883]
gi|390418549|gb|AFL86127.1| deoxyribodipyrimidine photolyase [Belliella baltica DSM 15883]
Length = 433
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 45/93 (48%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R +F+ + ++++ QLK + + G P+ +FQ L +E + +D E +RD
Sbjct: 52 RVQFIYDQISNISEQLKDFESSILVKYGYPLEVFQSLFKEYTIQNIYTNRDYEPYAEERD 111
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+ +K +NN +F +++ ++ +G
Sbjct: 112 QSIKDLAKKNNCQFLDFKDQVIFEKGEILNGSG 144
>gi|294085609|ref|YP_003552369.1| deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665184|gb|ADE40285.1| Deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 477
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 32 GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH-KRDKKVKKWCAENNITVKEFVS 90
G+L +++G P+ I KL ++ + + F C W RDK +K NNI V+ F
Sbjct: 68 GKLCVMRGDPVDIIPKLVAKVGASGV-FWNRCYEPWRIARDKMLKTNLTNNNIQVESFNG 126
Query: 91 HTLWDPEVVIQTNG 104
LW+P V++ +G
Sbjct: 127 SLLWEPWTVLKGDG 140
>gi|372221339|ref|ZP_09499760.1| deoxyribodipyrimidine photo-lyase [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 436
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 12 RFRFLLECLADLDRQLKSH-GGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
R F+ E L + + L+ L I +P ++F+KL + N + D E +R
Sbjct: 52 RVTFIFETLQQMRKTLQDKVDSSLAIFYDTPKTVFKKLVDDYNIETVFTNHDYEPYAKQR 111
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
D VK++ + I K F +++ + V++ +G+ P + Y Y+
Sbjct: 112 DTAVKEFLEDKGINFKTFKDQVIFEKDEVVKNDGD-PYVVYTPYM 155
>gi|359457825|ref|ZP_09246388.1| deoxyribodipyrimidine photolyase [Acaryochloris sp. CCMEE 5410]
Length = 484
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL + L+ L + QG P ++ +L + LN + F +
Sbjct: 47 FPKT---GPFRAQFLLESVADLRQSLRGKQSDLILRQGYPETVVPELAQALNVEVVYFNR 103
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
+ A + +++ A+ I F S TL+ PE
Sbjct: 104 EVTAEEINVETRLRTALADLGIECLRFWSSTLFHPE 139
>gi|126658972|ref|ZP_01730114.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
gi|126619770|gb|EAZ90497.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
Length = 486
Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +A+L + L+ G L + +G P I +L +EL + F +
Sbjct: 50 FPKT---GNFRGQFLLESVANLRQSLQDLGSDLIVRKGYPEKIIPELIKELEIDAVYFHE 106
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLW 94
+ + K +KKVK+ + V F TL+
Sbjct: 107 EVTSEETKVEKKVKQALKPLKVKVPGFWGATLY 139
>gi|357442473|ref|XP_003591514.1| DNA photolyase protein [Medicago truncatula]
gi|355480562|gb|AES61765.1| DNA photolyase protein [Medicago truncatula]
Length = 456
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
G R FL+E ++DL + LK+ G L + G P ++ +L +E+ + ++
Sbjct: 167 TGPYRASFLIESVSDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVYCHREVSHDE 226
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLW 94
K ++K++ E N+ VK F TL+
Sbjct: 227 VKMEEKIEGKMKEENVEVKYFWGSTLY 253
>gi|126663928|ref|ZP_01734923.1| Deoxyribodipyrimidine photolyase [Flavobacteria bacterium BAL38]
gi|126624192|gb|EAZ94885.1| Deoxyribodipyrimidine photolyase [Flavobacteria bacterium BAL38]
Length = 486
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE- 64
+H F F+ + L L ++L+ + Q+ I+QG + +FQKL + ++ ++ Q+
Sbjct: 42 IHYSQRHFDFIKQSLEALQKELQKYHTQILIIQGEAVPVFQKLTQVISIREIYSHQETGI 101
Query: 65 ALWHKRDKKVKKWCAENNITVKEFVSH 91
L ++RD V K E I E++++
Sbjct: 102 KLTYERDLAVGKLLKEKGIIWNEYITN 128
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 37/69 (53%)
Query: 113 MYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 172
+Y+ S + +H F F+ + L L ++L+ + Q+ I+QG + +FQKL + ++
Sbjct: 31 LYIFEPSLMKDIHYSQRHFDFIKQSLEALQKELQKYHTQILIIQGEAVPVFQKLTQVISI 90
Query: 173 TKLCFEQDC 181
++ Q+
Sbjct: 91 REIYSHQET 99
>gi|115452953|ref|NP_001050077.1| Os03g0343400 [Oryza sativa Japonica Group]
gi|108708083|gb|ABF95878.1| photolyase/blue-light receptor PHR2, putative, expressed [Oryza
sativa Japonica Group]
gi|113548548|dbj|BAF11991.1| Os03g0343400 [Oryza sativa Japonica Group]
gi|125586213|gb|EAZ26877.1| hypothetical protein OsJ_10801 [Oryza sativa Japonica Group]
Length = 459
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
G R FLL+ +ADL R L++ GG L + G P + +L R + +
Sbjct: 167 TGPYRAGFLLDSVADLRRGLRARGGDLVVRVGRPEVVIPELARAAGAEAVFAHGEVSRDE 226
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLW 94
+ ++KV K + I VK F TL+
Sbjct: 227 CRAEEKVSKAVEKEGIEVKYFWGSTLY 253
>gi|294500818|ref|YP_003564518.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
gi|294350755|gb|ADE71084.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
Length = 475
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
+L L D +K G L + +G+P + QKL E N + + E KRDK++
Sbjct: 51 WLHHALNDFKTSIKKIEGTLIVQKGNPKDVLQKLLHETNAQDIYWNSRYEPHALKRDKEL 110
Query: 75 KKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+ + +E I ++ F L +P + + NG+
Sbjct: 111 QAFFSEQQINIRTFEGFLLHEPWKITKENGD 141
>gi|125543822|gb|EAY89961.1| hypothetical protein OsI_11521 [Oryza sativa Indica Group]
Length = 451
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
G R FLL+ +ADL R L++ GG L + G P + +L R + +
Sbjct: 158 RTGPYRAGFLLDSVADLRRGLRARGGDLVVRVGRPEVVIPELARAAGAEAVFAHGEVSRD 217
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLW 94
+ ++KV K + I VK F TL+
Sbjct: 218 ECRAEEKVSKAVEKEGIEVKYFWGSTLY 245
>gi|363422380|ref|ZP_09310456.1| deoxyribodipyrimidine photo-lyase [Rhodococcus pyridinivorans AK37]
gi|359732979|gb|EHK81983.1| deoxyribodipyrimidine photo-lyase [Rhodococcus pyridinivorans AK37]
Length = 461
Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R FL+ CL LDR L GG+L +VQG P+ + ++ E + + D
Sbjct: 56 GARRRDFLMGCLQALDRDL---GGRLLVVQGDPMMLVPQVAAEFDAAAVHISSDHGPYGT 112
Query: 69 KRDKKVKK 76
+RD+ V +
Sbjct: 113 RRDRAVAE 120
>gi|72160938|ref|YP_288595.1| deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX]
gi|71914670|gb|AAZ54572.1| Deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX]
Length = 419
Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
NR +LLE LA+L L+ GG+L + QG ++ ++ E + D A +R
Sbjct: 47 NRIAYLLEALAELRGLLRERGGELVVRQGDTVAETVRIVAEAGAQAVYLSADVSAAAVRR 106
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+++ + V+ F T+ P + +G+
Sbjct: 107 ARQLTEAVRAAGAHVRTFPGVTVVPPGALRPAHGD 141
>gi|375148275|ref|YP_005010716.1| deoxyribodipyrimidine photo-lyase [Niastella koreensis GR20-10]
gi|361062321|gb|AEW01313.1| Deoxyribodipyrimidine photo-lyase [Niastella koreensis GR20-10]
Length = 435
Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 44/93 (47%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + L + QLK G L ++ +P++ F+KL ++ + D E +RD
Sbjct: 52 RVEFIHDALTGMQEQLKELGSTLDVLHDTPLNAFKKLVKQYTIEAVYTNHDYEPYAQERD 111
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
++ ++ E+ I + +++ V + +G
Sbjct: 112 NRIARFLEEHGIAFHTYKDQVIFEKNEVTKDDG 144
>gi|32477278|ref|NP_870272.1| DNA photolyase [Rhodopirellula baltica SH 1]
gi|32447829|emb|CAD77347.1| DNA photolyase [Rhodopirellula baltica SH 1]
Length = 526
Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R RFL+E L DL +L+S GG+L + G P ++ Q L L + F +
Sbjct: 84 GFQRTGPFRARFLIENLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEP 143
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ V++ C ++ I TL P+ + + P L
Sbjct: 144 RTEEADTAESVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPEL 189
Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 121 IGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
+G G R RFL+E L DL +L+S GG+L + G P ++ Q L L + F +
Sbjct: 83 LGFQRTGPFRARFLIENLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHE 142
>gi|294084365|ref|YP_003551123.1| deoxyribodipyrimidine photolyase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663938|gb|ADE39039.1| deoxyribodipyrimidine photolyase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 515
Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ Y + FL E LA LD L G L I G S+ + ++ T L ++ W
Sbjct: 43 MSYRHYAFLGETLASLDESLTKLGQPLVIYAGDMPSVLAGIHQKYGITALYSHEETGNGW 102
Query: 68 -HKRDKKVKKWCAENNITVKEFVSHTLWDP 96
+ RD V++WC +++ EF + + P
Sbjct: 103 TYARDLAVQEWCKDHHCPWHEFAQYGVHRP 132
>gi|193216116|ref|YP_001997315.1| deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
gi|193089593|gb|ACF14868.1| Deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
Length = 477
Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
F+LE L L + GG+L + +G + + + L E + F +D E RD+ V
Sbjct: 54 FMLESLEALALSYANIGGKLIVRRGQVLEVLKSLVGETRAQAIYFNEDYEPFAKMRDQAV 113
Query: 75 KKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+ + + VK F + P+ V++ NG
Sbjct: 114 QSEFEKLGVRVKAFTDQVCFHPQRVLKDNG 143
>gi|123967930|ref|YP_001008788.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str.
AS9601]
gi|123198040|gb|ABM69681.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
str. AS9601]
Length = 498
Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC-EALWHKR 70
+++F E L DL L G L I G+ I+IF + + + Q+ + L +KR
Sbjct: 50 QWQFCKESLIDLRNALAEIGQPLIIRTGNVINIFDAISSKFKIKGIYSHQETGDWLTYKR 109
Query: 71 DKKVKKWCAENNITVKEFVSHTL 93
D+KVK+W NI KEF+ ++
Sbjct: 110 DQKVKEWAFSKNIIWKEFLQFSV 132
>gi|148976255|ref|ZP_01812979.1| deoxyribodipyrimidine photolyase, putative [Vibrionales bacterium
SWAT-3]
gi|145964349|gb|EDK29604.1| deoxyribodipyrimidine photolyase, putative [Vibrionales bacterium
SWAT-3]
Length = 497
Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60
M H +RF+ + L +++ LK++G Q+ I+ GS + F+ ++ + L
Sbjct: 40 MLLNNAHYSERHWRFVWQSLQCMNQSLKAYGHQVSILHGSAVDCFEAIQSRYHIKNLFSH 99
Query: 61 QD----CEALWHKRDKKVKKWCAENNITVKEFV 89
Q+ C +RD+++ W E+NI +EF
Sbjct: 100 QEIGLNCT---FERDRELSTWFTEHNIPWQEFA 129
>gi|432928263|ref|XP_004081133.1| PREDICTED: cryptochrome DASH-like [Oryzias latipes]
Length = 521
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKLCFE 60
FP T G R RFLL+ + DL L S G L + +G P + L ++L + + + F
Sbjct: 52 FPKT---GPFRLRFLLDSVRDLRNTLLSKGSNLVVRRGKPEEVVADLIKQLGSVSSVAFH 108
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLW 94
++ + +KKVK+ CA+ + V HT W
Sbjct: 109 EEVASEELNVEKKVKEVCAQMEVKV-----HTCW 137
>gi|421610747|ref|ZP_16051913.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH28]
gi|408498531|gb|EKK03024.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH28]
Length = 488
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R RFL+E L DL +L+S GG+L + G P ++ Q L L + F +
Sbjct: 46 GFQRTGPFRARFLIESLTDLRSRLRSLGGELIVRAGRPETVLQHLLPSLAVDAVHFHHEP 105
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ V++ C + I TL P+ + + P L
Sbjct: 106 GTEEADTAESVQQLCDQQGIATHVAYGDTLIHPDELPFEISDTPEL 151
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 121 IGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
+G G R RFL+E L DL +L+S GG+L + G P ++ Q L L + F +
Sbjct: 45 LGFQRTGPFRARFLIESLTDLRSRLRSLGGELIVRAGRPETVLQHLLPSLAVDAVHFHHE 104
>gi|424046207|ref|ZP_17783770.1| cryptochrome-like protein cry2 [Vibrio cholerae HENC-03]
gi|408885464|gb|EKM24181.1| cryptochrome-like protein cry2 [Vibrio cholerae HENC-03]
Length = 493
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ----D 62
H +RF+ + L D++ L + G Q+ ++ GS I ++ + N + Q D
Sbjct: 46 HYSARHWRFIWQSLQDMNETLSARGHQVSVMSGSVIDCLSAIQNQFNINAIFSHQEIGLD 105
Query: 63 CEALWHKRDKKVKKWCAENNITVKEF 88
C +RDK+V +W + +EF
Sbjct: 106 CT---FERDKQVSEWLQSQGVPWREF 128
>gi|97047983|sp|Q7UJB1.2|CRYD_RHOBA RecName: Full=Cryptochrome DASH
Length = 488
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R RFL+E L DL +L+S GG+L + G P ++ Q L L + F +
Sbjct: 46 GFQRTGPFRARFLIENLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEP 105
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ V++ C ++ I TL P+ + + P L
Sbjct: 106 RTEEADTAESVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPEL 151
Score = 39.3 bits (90), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 121 IGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
+G G R RFL+E L DL +L+S GG+L + G P ++ Q L L + F +
Sbjct: 45 LGFQRTGPFRARFLIENLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHE 104
>gi|86605025|ref|YP_473788.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
gi|86553567|gb|ABC98525.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
Length = 488
Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE 169
+ G G R +FLLE LADL +QL++ G L I QG P + L RE
Sbjct: 43 TAFGFPKTGPFRAQFLLESLADLRQQLRARGSDLVIRQGQPEQVIPALARE 93
Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE LADL +QL++ G L I QG P + L RE + +
Sbjct: 47 FPKT---GPFRAQFLLESLADLRQQLRARGSDLVIRQGQPEQVIPALAREWGVKAVYAHE 103
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDP 96
+ + +++ I + HTL+ P
Sbjct: 104 EVGTEEEAVARALQQALQPLGIPLHLEWGHTLYHP 138
>gi|158335578|ref|YP_001516750.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
gi|158305819|gb|ABW27436.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
Length = 484
Score = 42.7 bits (99), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL + L+ L + QG P ++ +L + L + F +
Sbjct: 47 FPKT---GPFRAQFLLESVADLRQSLRGKQSDLILRQGHPETVLPELAQALKVETVYFNR 103
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
+ A + + +++ A+ I F S TL+ PE
Sbjct: 104 EVTAEEIEVENRLRSALADLGIECLRFWSSTLFHPE 139
>gi|330752085|emb|CBL80595.1| deoxyribodipyrimidine photolyase [uncultured Leeuwenhoekiella sp.]
Length = 434
Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 12 RFRFLLECLADL-DRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
R F+ E L + DR H L + G PI I++++ ++ ++ +D E +R
Sbjct: 51 RVTFIYETLQKMRDRLQNDHTSSLALFYGKPIDIWKQILKDYEVKEVYTNRDYEPYAKRR 110
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY----LHTVSCIGTMHI 126
D+++ E +I K F +++ + V++ +G P + Y Y L T + + I
Sbjct: 111 DEEISSLFEEKDIDFKTFKDQVIFEKDDVVKGDGE-PYIVYTPYKNKWLETFNEDNDLKI 169
Query: 127 GY 128
Y
Sbjct: 170 HY 171
>gi|417302466|ref|ZP_12089566.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
gi|327541206|gb|EGF27750.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
Length = 488
Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R RFL+E L DL +L+S GG+L + G P ++ Q L L + F +
Sbjct: 46 GFQRTGPFRARFLIESLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEP 105
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ V++ C ++ I TL P+ + + P L
Sbjct: 106 GTEEADTAESVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPGL 151
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 121 IGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
+G G R RFL+E L DL +L+S GG+L + G P ++ Q L L + F +
Sbjct: 45 LGFQRTGPFRARFLIESLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHE 104
>gi|405958349|gb|EKC24485.1| Eukaryotic translation initiation factor 2-alpha kinase 4
[Crassostrea gigas]
Length = 1998
Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 2 FPGTMHIGY-----NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL---N 53
F GT H G+ +R +FLLE + DL + LK G L + +G P +K+ L +
Sbjct: 45 FGGTYHFGFPKTGPHRTKFLLESIQDLRKNLKIRGSGLAVRKGKPHEELKKMIDMLGQSS 104
Query: 54 FTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
+ F ++ +K +KK C N +K F HTL+ E
Sbjct: 105 VHSVVFHEEVTQEELDVEKSIKKHCGVN---IKTFWGHTLYHRE 145
>gi|333898405|ref|YP_004472278.1| DASH family cryptochrome [Pseudomonas fulva 12-X]
gi|333113670|gb|AEF20184.1| cryptochrome, DASH family [Pseudomonas fulva 12-X]
Length = 472
Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 48
G+ IG +R RFLLE L LD L+ G +L +V G P + +L
Sbjct: 45 GSRRIGVHRARFLLESLTALDSALRQRGSKLLVVSGKPEEVIAQL 89
Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 166
G+ IG +R RFLLE L LD L+ G +L +V G P + +L
Sbjct: 45 GSRRIGVHRARFLLESLTALDSALRQRGSKLLVVSGKPEEVIAQL 89
>gi|329941848|ref|ZP_08291113.1| deoxyribodipyrimidine photolyase [Streptomyces griseoaurantiacus
M045]
gi|329299565|gb|EGG43465.1| deoxyribodipyrimidine photolyase [Streptomyces griseoaurantiacus
M045]
Length = 468
Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
NR FL +CL DLD L+ GG+L + G + ++ E + ++ D A H+R
Sbjct: 49 NRLAFLADCLRDLDAGLRERGGRLVVRSGDLVEEVCRVAAEADAGEVHMASDVSAHAHRR 108
Query: 71 DKKVKKWCAENNITVKEFVSHTL--WDPEVVIQTNGNVPP 108
+ +++ T E V L D ++ G+V P
Sbjct: 109 EDRLR--------TALEAVGRGLVVHDTVTTVRAPGSVTP 140
>gi|404450628|ref|ZP_11015608.1| deoxyribodipyrimidine photolyase [Indibacter alkaliphilus LW1]
gi|403763683|gb|EJZ24627.1| deoxyribodipyrimidine photolyase [Indibacter alkaliphilus LW1]
Length = 432
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + + + LK + + G P+ I+Q+L E + + +D E +RD
Sbjct: 52 RVEFIHDQIQKISNGLKDFESSILVKYGKPLDIWQELLEEYDIQNVYTNRDYEPYAKERD 111
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+VKK E NI +F +++ + ++ +G+
Sbjct: 112 TQVKKLLKERNIQFLDFKDQVIFEKDEIVNGSGD 145
>gi|377821540|ref|YP_004977911.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. YI23]
gi|357936375|gb|AET89934.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. YI23]
Length = 498
Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ +LDR L+ GG L + G P+ L R+ + + +D E RD
Sbjct: 53 RVPFIHASAVELDRTLREAGGGLIALHGHPLHDIPALARDCDVNAVFANRDYEPAAKARD 112
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+ V + A +I F ++D + V+ G
Sbjct: 113 EAVGQKLASQDIAFFTFKDQAVFDHDDVMTGAG 145
>gi|340781033|ref|YP_004747640.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
gi|340555186|gb|AEK56940.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
Length = 493
Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HKRD 71
+ F+ + L +L L + G L + +G+ + +L R+ FT+L ++ + W + RD
Sbjct: 51 WEFIRQSLLELRDNLAARGMPLLLRRGAMPLVLAQLWRDYPFTELLSHEETGSAWTYARD 110
Query: 72 KKVKKWCAENNITVKEF 88
++V WC E I +++
Sbjct: 111 RRVAAWCRERGIAWRQW 127
>gi|384045337|ref|YP_005493354.1| Deoxyribodipyrimidine photolyase family protein [Bacillus
megaterium WSH-002]
gi|345443028|gb|AEN88045.1| Deoxyribodipyrimidine photolyase family protein [Bacillus
megaterium WSH-002]
Length = 475
Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
+L L D ++ G L I +G+P + QKL E N + + + E KRDK++
Sbjct: 51 WLHHALNDFKTSIEKIEGTLIIKKGNPKDVLQKLIHETNAQDIYWNRRYEPHALKRDKEL 110
Query: 75 KKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+ + +E I ++ F L +P + + NG+
Sbjct: 111 QAFFSEQQINIRTFEGFLLHEPWKITKENGD 141
>gi|254227310|ref|ZP_04920742.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
gi|262396423|ref|YP_003288276.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
[Vibrio sp. Ex25]
gi|151939922|gb|EDN58748.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
gi|262340017|gb|ACY53811.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
[Vibrio sp. Ex25]
Length = 493
Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD---- 62
H +RF+ + L D++ LK++G ++ ++ G ++ FQ ++ + + Q+
Sbjct: 46 HYSERHWRFVWQSLQDMNETLKAYGHRITVLFGDALACFQSIQMQYQINAVFSHQEIGLN 105
Query: 63 CEALWHKRDKKVKKWCAENNITVKEF 88
C +RDK++ W E NIT EF
Sbjct: 106 CT---FERDKQIADWLHEQNITWFEF 128
>gi|345004881|ref|YP_004807734.1| deoxyribodipyrimidine photo-lyase [halophilic archaeon DL31]
gi|344320507|gb|AEN05361.1| Deoxyribodipyrimidine photo-lyase [halophilic archaeon DL31]
Length = 498
Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R RF+L+ LA L Q + G L + QG P ++ L + + + +D L +RD
Sbjct: 45 RVRFMLDALAALREQYRERGSDLVVAQGDPATVLPALAAAADAESIHWNEDYSMLSRERD 104
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLH 116
+V+ ++ + L +P I+TN P Y +Y +
Sbjct: 105 ARVRLALERADVARESHHDGQLHEP-GTIRTNQGDP---YSVYTY 145
>gi|255020504|ref|ZP_05292568.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
gi|254970024|gb|EET27522.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
Length = 493
Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HKRD 71
+ F+ + L +L L + G L + +G+ + +L R+ FT+L ++ + W + RD
Sbjct: 51 WEFIRQSLLELRDNLAARGMPLLLRRGAMPLVLAQLWRDYPFTELLSHEETGSAWTYARD 110
Query: 72 KKVKKWCAENNITVKEF 88
++V WC E I +++
Sbjct: 111 RRVAAWCRERGIAWRQW 127
>gi|451977581|ref|ZP_21927659.1| Deoxyribodipyrimidine photolyase [Vibrio alginolyticus E0666]
gi|451929569|gb|EMD77308.1| Deoxyribodipyrimidine photolyase [Vibrio alginolyticus E0666]
Length = 493
Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD---- 62
H +RF+ + L D++ LK++G ++ ++ G ++ FQ ++ + + Q+
Sbjct: 46 HYSERHWRFVWQSLQDMNETLKAYGHRITVLFGDALACFQSIQMQYQINAVFSHQEIGLN 105
Query: 63 CEALWHKRDKKVKKWCAENNITVKEF 88
C +RDK++ W E NIT EF
Sbjct: 106 CT---FERDKQIADWLHEQNITWFEF 128
>gi|90020376|ref|YP_526203.1| deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans
2-40]
gi|89949976|gb|ABD79991.1| Deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans
2-40]
Length = 483
Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
+L LA +K+ GG L + +G P ++ +L + + Q E + +
Sbjct: 53 WLHHSLAAFTNSIKNKGGVLSLFEGDPATLVPELISQNKIDAVYLSQGFEPYEVQLQANI 112
Query: 75 KKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
KWC ++NI K F H L +P+ + G
Sbjct: 113 HKWCKQHNIECKRFAGHLLLNPDTHLNKQG 142
>gi|433647152|ref|YP_007292154.1| deoxyribodipyrimidine photolyase [Mycobacterium smegmatis JS623]
gi|433296929|gb|AGB22749.1| deoxyribodipyrimidine photolyase [Mycobacterium smegmatis JS623]
Length = 426
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
T G R ++L + L DL L G+L + +G P + KL +E+ + + D
Sbjct: 40 TASAGPRRLQYLYDALRDLHESLD---GRLHVTRGRPEKVIPKLAKEIGASSVHVSADYS 96
Query: 65 ALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD V+ A ++ ++E S L P V +++G YK++
Sbjct: 97 PFGRRRDVAVR--SALGDVALEEAGSPYLVSPGRVAKSDGT----PYKVF 140
>gi|308049735|ref|YP_003913301.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
[Ferrimonas balearica DSM 9799]
gi|307631925|gb|ADN76227.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
[Ferrimonas balearica DSM 9799]
Length = 484
Score = 42.4 bits (98), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK-LCFEQDCEA 65
H +RF+ + L DL+ L HGG++ PI +L + + L E+ +
Sbjct: 48 HYAPRHWRFVWQSLKDLNAGLAPHGGRVTCWFCDPIDALNRLASDFTLVQLLSHEETGLS 107
Query: 66 LWHKRDKKVKKWCAENNITVKEF 88
+ +RD+ V +WC +N + ++
Sbjct: 108 VTFERDQAVSRWCDDNGVPWHQW 130
>gi|343084950|ref|YP_004774245.1| DNA photolyase FAD-binding protein [Cyclobacterium marinum DSM 745]
gi|342353484|gb|AEL26014.1| DNA photolyase FAD-binding protein [Cyclobacterium marinum DSM 745]
Length = 434
Score = 42.4 bits (98), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 46/94 (48%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R +F+ + L LK + + + G P++IF+ L + + +D E RD
Sbjct: 52 RVQFIHNQVKKLHSALKDYDSSILVKIGKPLAIFEALTKAYAIQNVYTNRDYEPYARDRD 111
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+K++++ AE +I +F +++ + + +G+
Sbjct: 112 EKIEQFLAEKDIPFYDFKDQVIFEKDEITNNSGS 145
>gi|218246283|ref|YP_002371654.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
gi|218166761|gb|ACK65498.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
Length = 481
Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R +L+ CL +L + + G L +QG P I +L L+ + + D E +RD
Sbjct: 51 RIAYLIGCLQELQQTYQKLGSNLLFIQGEPSHIIPQLAAVLDAEAVFWNLDVEPYSQRRD 110
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
++V + E I + + L P ++ +G YK+Y
Sbjct: 111 EQVIQALKEQGIKTQTYWDQLLHYPGEIVTKSGE----PYKVY 149
>gi|440712553|ref|ZP_20893169.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SWK14]
gi|436442708|gb|ELP35819.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SWK14]
Length = 488
Score = 42.4 bits (98), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R RFL+E L DL +L+S GG+L + G P ++ Q L L + F +
Sbjct: 46 GFQRTGPFRARFLIESLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEP 105
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ V++ C + I TL P+ + + P L
Sbjct: 106 GTEEADTAESVQQLCDQQGIATHVAYGDTLIHPDELPFEISDTPEL 151
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 121 IGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
+G G R RFL+E L DL +L+S GG+L + G P ++ Q L L + F +
Sbjct: 45 LGFQRTGPFRARFLIESLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHE 104
>gi|338997996|ref|ZP_08636678.1| Deoxyribodipyrimidine photo-lyase [Halomonas sp. TD01]
gi|338765127|gb|EGP20077.1| Deoxyribodipyrimidine photo-lyase [Halomonas sp. TD01]
Length = 526
Score = 42.4 bits (98), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH-KRD 71
++F + L DL L++ G L I QG + + LK L Q+ W +RD
Sbjct: 53 WQFAADALIDLSNALEAIGLPLCIWQGDIVDLLNALKAHYGHIALHSHQETGNAWSFERD 112
Query: 72 KKVKKWCAENNITVKEFVSH 91
K+V WC N + +E H
Sbjct: 113 KQVHAWCQTNGVAWREARQH 132
>gi|452959038|gb|EME64379.1| deoxyribodipyrimidine photo-lyase [Rhodococcus ruber BKS 20-38]
Length = 454
Score = 42.4 bits (98), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R FL+ CL LD L GG+L + G P ++ L REL+ + D
Sbjct: 46 GSPRRTFLMRCLRALDEDL---GGRLLVTHGDPATVVPALARELDAEAVHVSADHGPYGA 102
Query: 69 KRDKKVKK 76
+RD+ V++
Sbjct: 103 RRDEAVER 110
>gi|255533599|ref|YP_003093971.1| DASH family cryptochrome [Pedobacter heparinus DSM 2366]
gi|255346583|gb|ACU05909.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366]
Length = 430
Score = 42.4 bits (98), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT G R FLLE + L + + GG + +VQG P + + L + + ++ ++
Sbjct: 49 GTAKTGIVRASFLLESILSLRKAFQRFGGDILLVQGKPEDMIRDLVEQFDIAEVYHHREV 108
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
+ V+ I +K F+ HTL++ E
Sbjct: 109 GPEETEISGHVEDLLWTLKINLKHFIGHTLYNKE 142
>gi|356500345|ref|XP_003518993.1| PREDICTED: blue-light photoreceptor PHR2-like [Glycine max]
Length = 428
Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
G R FL++ ++DL R L++ G L + G P ++ +L + + + ++
Sbjct: 138 TGPYRAAFLIDSVSDLRRNLQARGSDLVVRVGKPEAVLVELAKAVGADAVYAHREVSHDE 197
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLW 94
K +++V+ E N+ VK F TL+
Sbjct: 198 AKAEERVEAAMKEENVEVKYFWGSTLY 224
>gi|329902812|ref|ZP_08273260.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
gi|327548607|gb|EGF33264.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
Length = 508
Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL-CFEQDCEAL 66
+ ++FLLE L++LD L GG L + G + I L R+ L E+ +
Sbjct: 45 VSNQHYQFLLESLSELDAALARRGGCLHVAVGEVVDILDALLRQSPIADLFAHEETGNDI 104
Query: 67 WHKRDKKVKKWCAENNITVKE 87
++RD V +WC + + E
Sbjct: 105 SYQRDLAVGRWCRTHQVGWHE 125
>gi|434399467|ref|YP_007133471.1| cryptochrome, DASH family [Stanieria cyanosphaera PCC 7437]
gi|428270564|gb|AFZ36505.1| cryptochrome, DASH family [Stanieria cyanosphaera PCC 7437]
Length = 488
Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 4/124 (3%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL + L+ G L I G P I L ++L + + Q
Sbjct: 50 FPKT---GNYRAQFLLESVADLKKSLQKLGSDLIIYWGFPEQIIPHLAQKLKIDSVYYHQ 106
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
+ A K ++ +K+ + I V F TL+ E + +P L Y + V
Sbjct: 107 EVTAEELKVEQALKQELQKLKIQVNSFWGATLYLTEDLPFEISQIPEL-YTNFRKQVEAK 165
Query: 122 GTMH 125
T+
Sbjct: 166 STIE 169
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
+ G G R +FLLE +ADL + L+ G L I G P I L ++L + +
Sbjct: 46 TSFGFPKTGNYRAQFLLESVADLKKSLQKLGSDLIIYWGFPEQIIPHLAQKLKIDSVYYH 105
Query: 179 QDCEA 183
Q+ A
Sbjct: 106 QEVTA 110
>gi|291303346|ref|YP_003514624.1| deoxyribodipyrimidine photo-lyase [Stackebrandtia nassauensis DSM
44728]
gi|290572566|gb|ADD45531.1| Deoxyribodipyrimidine photo-lyase [Stackebrandtia nassauensis DSM
44728]
Length = 436
Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 67/173 (38%), Gaps = 8/173 (4%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
N+ RFL+E L DL L+ GG L + +G P+ KL R L + +D +
Sbjct: 81 NQRRFLVESLTDLRESLRRLGGDLLVRRGDPVEQTLKLCRLLATDGIGMAEDYGPAARRL 140
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG--TMHIGY 128
+++ + + ++ F T+ +P V T G + YL + S H
Sbjct: 141 RQRLAEAAEAERVGLRLFPGVTIVEPGAVRPTTGADHYKVFTPYLRSWSATPWRPEHEAP 200
Query: 129 NRFRFLLECLADLDRQL--KSHGGQLFIVQGSPISIFQK----LKRELNFTKL 175
R + D + GG +V G + ++ + RE ++ +
Sbjct: 201 QAIRLPADVTGDDPASVIGPVEGGSSDVVDGGETAGLRRWDSWIDREPDYPAI 253
>gi|295840351|ref|ZP_06827284.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
gi|295827937|gb|EFG65724.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
Length = 455
Score = 42.4 bits (98), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 3 PGTMHIGY---NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 48
PG G+ NR FL +CLA LD L+ GG+L + G P+ I ++L
Sbjct: 38 PGIEKAGFTAPNRAAFLADCLAGLDAGLRERGGRLVVRAGDPVRIVREL 86
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
NR FL +CLA LD L+ GG+L + G P+ I ++L ++ AY
Sbjct: 49 NRAAFLADCLAGLDAGLRERGGRLVVRAGDPVRIVRELVGSTGAERVHVAAGLSAY 104
>gi|345853246|ref|ZP_08806153.1| deoxyribodipyrimidine photo-lyase [Streptomyces zinciresistens K42]
gi|345635300|gb|EGX56900.1| deoxyribodipyrimidine photo-lyase [Streptomyces zinciresistens K42]
Length = 456
Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
NR FL +CL DLD L+ GG+L + +G + K+ E + ++ D A +R
Sbjct: 49 NRLAFLADCLRDLDTGLRERGGRLVLREGDLVDQVGKVAAEADADEVHMASDVSAHARRR 108
Query: 71 DKKVKK 76
++ +++
Sbjct: 109 EEGLRR 114
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
NR FL +CL DLD L+ GG+L + +G + K+ E + ++ D A+
Sbjct: 49 NRLAFLADCLRDLDTGLRERGGRLVLREGDLVDQVGKVAAEADADEVHMASDVSAH 104
>gi|186686938|ref|YP_001870131.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
gi|186469290|gb|ACC85090.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
Length = 516
Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 21/108 (19%)
Query: 91 HTLW--------DPEVVIQTNGN----VPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECL 138
H LW D E+V ++GN +P + +T + +GT R RFL E L
Sbjct: 2 HLLWFRRDLRLTDNEIVTSSSGNDARVLPFFIIDPWFYTWADVGTA-----RVRFLFESL 56
Query: 139 ADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDCE 182
L+ L+ +L++ +G+ I Q+L R+L KL F +D +
Sbjct: 57 EKLNSNLQKLSSRLYLFEGNSTGIVQELTRQLTERGYKPKLFFNRDVQ 104
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDC 63
+G R RFL E L L+ L+ +L++ +G+ I Q+L R+L KL F +D
Sbjct: 44 VGTARVRFLFESLEKLNSNLQKLSSRLYLFEGNSTGIVQELTRQLTERGYKPKLFFNRDV 103
Query: 64 EALWH-KRDKKV 74
+ + RDK +
Sbjct: 104 QVEYGINRDKTI 115
>gi|393759561|ref|ZP_10348374.1| deoxyribodipyrimidine photo-lyase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393162122|gb|EJC62183.1| deoxyribodipyrimidine photo-lyase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 514
Score = 42.4 bits (98), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+L+ L L QL+ HG +L V G P+ L LN + +D E RD
Sbjct: 94 RVAFILDSLQSLQEQLRQHGSELITVHGDPVQQIPLLANHLNAQTVYANEDYEPAALTRD 153
Query: 72 KKVKKWCAENNITVKEF 88
V + A +K F
Sbjct: 154 HAVSQSLAAQGRVLKLF 170
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
R F+L+ L L QL+ HG +L V G P+ L LN + +D E
Sbjct: 94 RVAFILDSLQSLQEQLRQHGSELITVHGDPVQQIPLLANHLNAQTVYANEDYE 146
>gi|219116188|ref|XP_002178889.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum
tricornutum CCAP 1055/1]
gi|217409656|gb|EEC49587.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 610
Score = 42.4 bits (98), Expect = 0.090, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 48
G + G R +F+L+ + DL R L+S G L++ G P +FQ+L
Sbjct: 108 GQLKCGPRRAQFVLDSVQDLRRSLQSRGSALYVAHGKPAQVFQRL 152
Score = 42.4 bits (98), Expect = 0.090, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 166
G + G R +F+L+ + DL R L+S G L++ G P +FQ+L
Sbjct: 108 GQLKCGPRRAQFVLDSVQDLRRSLQSRGSALYVAHGKPAQVFQRL 152
>gi|145588429|ref|YP_001155026.1| deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145046835|gb|ABP33462.1| deoxyribodipyrimidine photo-lyase type I [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 492
Score = 42.4 bits (98), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + L +D +L+ GG L + G P+ ++ ++L + D E RD
Sbjct: 59 RVDFIWQGLEQIDEELRKQGGGLIVRFGKPVECIPQIAKDLGVDTVFTNHDYEPSAIARD 118
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNV 106
+ VK A+++I + F +++ + ++ TN N
Sbjct: 119 EAVKTLLAKSDIQFESFKDQVIFEKKEIL-TNSNT 152
>gi|363539927|ref|YP_004894453.1| mg402 gene product [Megavirus chiliensis]
gi|350611092|gb|AEQ32536.1| deoxyribodipyrimidine photolyase [Megavirus chiliensis]
Length = 152
Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 11 NRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
N +F++E L DL+ Q+ +L+ G I + ++ + +N + + D
Sbjct: 55 NSIQFMIESLYDLNSQINFLDKKLKLWTTYGDEIDVIDEIHKNINISAIYINDDYTPYSI 114
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWD 95
KRDKK++ +C + NI + L D
Sbjct: 115 KRDKKIQNYCDQQNIILNTSTDILLTD 141
>gi|302541523|ref|ZP_07293865.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus ATCC
53653]
gi|302459141|gb|EFL22234.1| deoxyribodipyrimidine photolyase [Streptomyces himastatinicus ATCC
53653]
Length = 445
Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
NR FL +CLADLD L+ GG+L + G + +++ +++ ++ A +R
Sbjct: 55 NRVAFLRDCLADLDAGLRERGGRLIVRTGDAVEEIRRVAEQVDAGEVHIAGGVSAFAGRR 114
Query: 71 DKKVKK 76
+ ++++
Sbjct: 115 EARLRE 120
Score = 39.3 bits (90), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
NR FL +CLADLD L+ GG+L + G + +++ +++ ++ A+
Sbjct: 55 NRVAFLRDCLADLDAGLRERGGRLIVRTGDAVEEIRRVAEQVDAGEVHIAGGVSAF 110
>gi|448825355|ref|YP_007418286.1| deoxyribodipyrimidine photolyase [Megavirus lba]
gi|444236540|gb|AGD92310.1| deoxyribodipyrimidine photolyase [Megavirus lba]
Length = 152
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 11 NRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
N +F++E L DL+ Q+ +L+ G+ I + ++ + +N + + D
Sbjct: 55 NSIQFMIESLYDLNSQINFLDKKLRLWTTYGNEIDVIDEIHKNINVSAIYINDDYTPYSI 114
Query: 69 KRDKKVKKWCAENNI 83
KRDKK++ +C + NI
Sbjct: 115 KRDKKIQNYCDQQNI 129
>gi|385803847|ref|YP_005840247.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi C23]
gi|339729339|emb|CCC40585.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi C23]
Length = 478
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G R +++LE +A+L + L I +G P SI +L + ++ + ++
Sbjct: 49 HDGNARVQYMLESIAELRSWYRDRDSDLLIARGDPASILPELASTHDVDRVVWNREYSGF 108
Query: 67 WHKRDKKVKKWCAENNIT 84
RD++V E++I
Sbjct: 109 AQSRDQQVADALTEHDIA 126
>gi|318042779|ref|ZP_07974735.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0101]
Length = 510
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%)
Query: 113 MYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 172
+++ + +G + R FLLE L +L + + G +LF+++G P + +L L
Sbjct: 35 VFVLDPAILGAPDMAPARVWFLLESLRELQQSWREAGSRLFVLEGDPEQVLPQLAEALAA 94
Query: 173 TKLCFEQDCEAY 184
+ + +D E Y
Sbjct: 95 PVVAWNRDVEPY 106
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G + R FLLE L +L + + G +LF+++G P + +L L + + +D
Sbjct: 44 GAPDMAPARVWFLLESLRELQQSWREAGSRLFVLEGDPEQVLPQLAEALAAPVVAWNRDV 103
Query: 64 E 64
E
Sbjct: 104 E 104
>gi|148242284|ref|YP_001227441.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
gi|147850594|emb|CAK28088.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
Length = 503
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 78/210 (37%), Gaps = 38/210 (18%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60
MF ++ F E LA+L L + G L I G +++ + L R+ +L
Sbjct: 59 MFWAQPDASARQWEFCAESLAELREALAALGQPLVIRTGEALAVLKALHRQRGIAQLWSH 118
Query: 61 QDC-EALWHKRDKKVKKWCAENNI---------TVKEFVSHTLW--------------DP 96
Q+ ++RD+ V +WC E +I ++ + W DP
Sbjct: 119 QETGNDFTYRRDRLVARWCREQSIRWHQPRSFGVIRAMGNRDGWAPAWELLMRQSVCADP 178
Query: 97 EVVIQTNGNVP---PLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLF 153
+ + G P P + L + C G G ++ LLE H G+ +
Sbjct: 179 APLTRLGGIDPGGIPSADDLKLPSDPCPGRQRGGRSQGAALLESFLH-------HRGRRY 231
Query: 154 IVQ-GSPISIFQ---KLKRELNFTKLCFEQ 179
+ SP++ F+ +L L F L +
Sbjct: 232 AKELSSPLTAFESCSRLSAHLTFGTLSMRE 261
>gi|335425144|ref|ZP_08554132.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
gi|334886580|gb|EGM24937.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
Length = 483
Score = 42.0 bits (97), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G + +L + LA L++ G +L I +G + L E T + + +
Sbjct: 44 GDWAPGAAQRVWLHDSLAAFSDALEALGSRLVIRRGDTTDVLDTLIAESGATSVYWNRLY 103
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+ L RDKKVK+ A+N+I F +H L +P V G YK++
Sbjct: 104 DPLTIARDKKVKQHLADNDIETASFKAHLLHEPWTVETKQGG----PYKVF 150
>gi|289774148|ref|ZP_06533526.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
gi|289704347|gb|EFD71776.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
Length = 457
Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 40/75 (53%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
NR FL +CL+DLD L+ GG+L + G + + + + T++ H+R
Sbjct: 49 NRRAFLADCLSDLDSSLRHRGGRLVVRDGPVVREVRSVAAQCGSTEVHVAAGVTGYAHRR 108
Query: 71 DKKVKKWCAENNITV 85
++++++ ++ +++
Sbjct: 109 EERLREGLRDDGVSL 123
>gi|448717562|ref|ZP_21702731.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
gi|445785862|gb|EMA36647.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
Length = 470
Score = 42.0 bits (97), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 42/98 (42%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R LLE L+ L +Q + GG L + +G + + E + + + +D L
Sbjct: 42 HASPVRVSCLLEALSGLRKQYRERGGDLLVRRGEASDVVPAVASEYDAEAVSWNEDYSGL 101
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+RD+ V ++ I V+ + +P + +G
Sbjct: 102 ARERDRAVTATLEDDGIAVETVHDRIVHEPGSITPNSG 139
>gi|126666531|ref|ZP_01737509.1| deoxyribodipyrimidine photolyase, putative [Marinobacter sp. ELB17]
gi|126628919|gb|EAZ99538.1| deoxyribodipyrimidine photolyase, putative [Marinobacter sp. ELB17]
Length = 500
Score = 42.0 bits (97), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNF-TKLCFEQDC 63
H+ +RF+++ ++D++ QL G + +V G I +L++ + T E+
Sbjct: 50 HLSLRHWRFIMKSISDMNLQLNRAGCEAGVALVHGECIESLTRLQQRYSLHTLFSHEETG 109
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTL 93
+A +RD++V WC + ++ +EF ++ +
Sbjct: 110 DASTFERDQQVAHWCQQQDVNWQEFTTNAV 139
>gi|371943699|gb|AEX61527.1| deoxyribodipyrimidine photolyase [Megavirus courdo7]
Length = 150
Score = 42.0 bits (97), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 11 NRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
N +F++E L DL+ Q+ +L+ G I + ++ + +N + + D
Sbjct: 55 NSIQFMIESLHDLNSQINFLDKKLKLWTTYGDEIDVIDEIHKNINISAIYINDDYTPYSI 114
Query: 69 KRDKKVKKWCAENNI 83
KRDKK++ +C + NI
Sbjct: 115 KRDKKIQNYCDQQNI 129
>gi|448315195|ref|ZP_21504847.1| deoxyribodipyrimidine photolyase [Natronococcus jeotgali DSM 18795]
gi|445612272|gb|ELY66003.1| deoxyribodipyrimidine photolyase [Natronococcus jeotgali DSM 18795]
Length = 525
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
FLL+ L L Q + GG+L + +G P ++ L + + + +D L +RD+ V
Sbjct: 91 FLLDALDSLREQYRDRGGELLLARGDPRAVLPALAAACDADAVTWNRDYSGLASERDRAV 150
Query: 75 KKWCAENNITVK-EFVSHTLW-DPEVVIQTNGN 105
A+ ++V E + TL +PE + +G+
Sbjct: 151 AGALADAGVSVGVERLGGTLLHEPEHITTNDGS 183
>gi|390569912|ref|ZP_10250187.1| deoxyribodipyrimidine photo-lyase [Burkholderia terrae BS001]
gi|420254982|ref|ZP_14757945.1| deoxyribodipyrimidine photolyase [Burkholderia sp. BT03]
gi|389938145|gb|EIM99998.1| deoxyribodipyrimidine photo-lyase [Burkholderia terrae BS001]
gi|398047192|gb|EJL39755.1| deoxyribodipyrimidine photolyase [Burkholderia sp. BT03]
Length = 504
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+L L +LDR LK GG L ++ G P +L +L + D E + +RD
Sbjct: 72 RIEFILASLEELDRSLKEGGGGLIVLHGDPHEEIPRLAAQLEAEAVFTNHDYEPVAIERD 131
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+ V + ++ + F +++ E ++ G
Sbjct: 132 ESVAERLRDDGRQLLTFKDQVIFEREELLNGQG 164
>gi|126663929|ref|ZP_01734924.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium
BAL38]
gi|126624193|gb|EAZ94886.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium
BAL38]
Length = 428
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ E L + +L G L + G PI IF +L E T + D E KRD
Sbjct: 48 RVSFIHEQLEKIQSELNKIGKSLAVFHGKPIEIFTQLISENTITSVYTNHDYEPYARKRD 107
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTY 111
K++ + N I+ +++ V++ +G+ P + Y
Sbjct: 108 KEMNQLFTTNGISFLTSKDQVIFEKSEVVKDDGS-PYVVY 146
>gi|148905938|gb|ABR16130.1| unknown [Picea sitchensis]
Length = 431
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
KRD VK++ + + V +SHT++ PE +I+ NG PPLTY+ ++ +
Sbjct: 9 QKRDGFVKEFALKLGVDVFTPISHTIFSPEEIIKKNGGKPPLTYQSFIKLI 59
>gi|347536503|ref|YP_004843928.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
branchiophilum FL-15]
gi|345529661|emb|CCB69691.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
branchiophilum FL-15]
Length = 428
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 46/94 (48%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + L ++ + + + + G PI I+++L N T + +D E +RD
Sbjct: 48 RVDFIHDSLQKMNDEFQKYNSSIATFYGDPIEIWKELITNHNITSVYINKDYEPAARERD 107
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
KK+ E+ I +K + +++ +++ +G+
Sbjct: 108 KKIYYLLQEHQIPLKAYKDQVIFEKNEIVKEDGS 141
>gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1]
gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1]
Length = 491
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R F++ L DLD L++ G +L + +G P + + L + + +D
Sbjct: 47 GMARVAFMIAALRDLDASLRARGSRLVVRRGRPSDVLRDLVGATGAVGVSWNRDYTPFAR 106
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+RD+ ++ + N+ + +P+ V +T+ P Y Y
Sbjct: 107 QRDQHIEAMLRDLNVATFIAADAVIMEPDDV-RTDDGRPYTVYTPY 151
>gi|374585921|ref|ZP_09659013.1| DNA photolyase FAD-binding [Leptonema illini DSM 21528]
gi|373874782|gb|EHQ06776.1| DNA photolyase FAD-binding [Leptonema illini DSM 21528]
Length = 493
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+++ L R + G L G P+ IF+ L + L+ + +D E RD
Sbjct: 59 RVGFIVDAL----RNVADTGLPLISFYGPPVEIFEGLSQHLSVAGVYANEDYEPYARARD 114
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+V+ I F H ++ PE +++ +G
Sbjct: 115 AQVRTGLDRRGIPFHLFTDHVIFHPEQILKNDG 147
>gi|290962800|ref|YP_003493982.1| deoxyribodipyrimidine photolyase [Streptomyces scabiei 87.22]
gi|260652326|emb|CBG75459.1| putative deoxyribodipyrimidine photolyase [Streptomyces scabiei
87.22]
Length = 453
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 113 MYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 172
+++ G NR FL +CL DLD L+ GG+L + G + K+ E +
Sbjct: 33 LFVRDRDVTGAGFAAPNRLAFLADCLRDLDTGLRERGGRLVVRSGDVVEEVCKVAAEADA 92
Query: 173 TKLCFEQDCEAY 184
++ D AY
Sbjct: 93 DEVHLAADVSAY 104
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
NR FL +CL DLD L+ GG+L + G + K+ E + ++ D A
Sbjct: 49 NRLAFLADCLRDLDTGLRERGGRLVVRSGDVVEEVCKVAAEADADEVHLAADVSA 103
>gi|29827753|ref|NP_822387.1| deoxyribodipyrimidine photolyase [Streptomyces avermitilis MA-4680]
gi|29604854|dbj|BAC68922.1| putative deoxyribodipyrimidine photolyase [Streptomyces avermitilis
MA-4680]
Length = 457
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
NR FL +CL DLD L+ GG+L + G + K+ E + ++ A H+R
Sbjct: 49 NRLAFLADCLRDLDAGLRERGGRLVLRSGDVVDQVCKVAAEADADEVHLAAGVSAYAHRR 108
Query: 71 DKKVKK 76
+++++
Sbjct: 109 EQRLRS 114
>gi|330825550|ref|YP_004388853.1| DNA photolyase FAD-binding protein [Alicycliphilus denitrificans
K601]
gi|329310922|gb|AEB85337.1| DNA photolyase FAD-binding protein [Alicycliphilus denitrificans
K601]
Length = 516
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL-CFEQDCEALWHKRD 71
++FL E L DL +QL+S G +L + G + +L F +L E+ + RD
Sbjct: 50 YQFLRESLRDLAQQLRSCGARLQLALGEVPEVLARLHALQPFARLVSHEETGNGATYARD 109
Query: 72 KKVKKWCAENNITVKEFVSHTL 93
V +WC + +E+ H +
Sbjct: 110 LAVARWCRRQGVAWQEWPQHGV 131
>gi|428301495|ref|YP_007139801.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 6303]
gi|428238039|gb|AFZ03829.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 6303]
Length = 476
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 32/77 (41%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H+ R +++ CL L ++ G QL IVQG P + L L + + D E
Sbjct: 46 HVAPVRVTYMIGCLQALQQRYAEVGSQLLIVQGEPTQVIPTLATALGAKAVFWNWDVEPY 105
Query: 67 WHKRDKKVKKWCAENNI 83
KRD V E I
Sbjct: 106 SQKRDHTVIDALKEQGI 122
>gi|332711249|ref|ZP_08431182.1| deoxyribodipyrimidine photo-lyase type I [Moorea producens 3L]
gi|332350063|gb|EGJ29670.1| deoxyribodipyrimidine photo-lyase type I [Moorea producens 3L]
Length = 474
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 38/98 (38%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R +++ CL L + + G QL I+ P L L +C+ D E
Sbjct: 47 IAPARVTYMIGCLEQLQQGYRQAGSQLLILHQDPRQGIPNLAAALEAKAVCWNWDVEPYS 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+RD+ V E I V + L P + +GN
Sbjct: 107 KERDQDVAAGLKEKGIAVYNYWDQLLHAPGEIFTKSGN 144
>gi|410909117|ref|XP_003968037.1| PREDICTED: cryptochrome DASH-like [Takifugu rubripes]
Length = 521
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 4 GTMH-----IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKL 57
GT H G R RFLLE + DL L + G L + +G P + L ++L + + +
Sbjct: 46 GTYHYNLPKTGPFRLRFLLESIKDLRNTLLNKGSNLIVRRGKPEEVVASLIKQLGSVSTV 105
Query: 58 CFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLW 94
F ++ + +K+VK CA+ + V HT W
Sbjct: 106 AFHEEVTSEELDVEKRVKDVCAQMKVNV-----HTCW 137
>gi|322707152|gb|EFY98731.1| cryptochrome-2 [Metarhizium anisopliae ARSEF 23]
gi|374257344|gb|AEZ01569.1| (6-4)PP photolyase [Metarhizium robertsii]
Length = 566
Score = 42.0 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 17 LECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
L+C DL + + +LF+++ +P ++F KL + T L FE+D +A +RD V
Sbjct: 10 LDCQNDLSSSITKLNPKSKLFVLREAPQTLFPKLLKAWKVTHLVFEKDTDAYARQRDDVV 69
Query: 75 KKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
K + V TLWD + ++ + P ++ L +G
Sbjct: 70 AKAAKAAGVKVVIHSGRTLWDSDEIVAHHDGKPAMSMTQLLSAAKKVG 117
>gi|348503387|ref|XP_003439246.1| PREDICTED: cryptochrome DASH-like [Oreochromis niloticus]
Length = 521
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKLCFEQDCEALWHKR 70
R RFLLE + DL L + G L + +G P + L R+L + + + F ++ +
Sbjct: 59 RLRFLLEGIRDLRNTLINKGSNLVVRRGKPEEVVADLIRQLGSVSSVAFHEEVTSEELNV 118
Query: 71 DKKVKKWCAENNITVKEFVSHTLW 94
+K+VK CA+ + V HT W
Sbjct: 119 EKRVKDVCAQMKVKV-----HTCW 137
>gi|428225294|ref|YP_007109391.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Geitlerinema sp. PCC 7407]
gi|427985195|gb|AFY66339.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Geitlerinema sp. PCC 7407]
Length = 498
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL L+ G L + G P + + R+L T + F +
Sbjct: 50 FPKT---GAFRAQFLLESVADLRASLQKRGSDLIVRVGKPEEVVPAIARDLGATAVYFHE 106
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVP 107
+ A ++++ + + + F TL+ P+ + +P
Sbjct: 107 EATAEEIAVEERLIQALKDQGTAHQSFWGATLYAPDDLPFGTDEIP 152
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 109 LTYKMYLHTVSCIGTMHIGYN----------RFRFLLECLADLDRQLKSHGGQLFIVQGS 158
L K + V C H G R +FLLE +ADL L+ G L + G
Sbjct: 26 LKQKTAIAPVYCFDPRHFGKTPYGFPKTGAFRAQFLLESVADLRASLQKRGSDLIVRVGK 85
Query: 159 PISIFQKLKRELNFTKLCFEQDCEA 183
P + + R+L T + F ++ A
Sbjct: 86 PEEVVPAIARDLGATAVYFHEEATA 110
>gi|323499198|ref|ZP_08104176.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
gi|323315831|gb|EGA68864.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
Length = 488
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE-A 65
H +RF+ L D+++QL +GG++ I++G +S F+ ++ + + Q+ +
Sbjct: 46 HYSERHWRFVSHSLVDMNQQLAPYGGKVSILRGEILSCFKAIQSLYSIANIYSHQEIGLS 105
Query: 66 LWHKRDKKVKKWCAENNI 83
++RDK+V W +NI
Sbjct: 106 CTYQRDKQVAHWTQAHNI 123
>gi|433591509|ref|YP_007281005.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|448333271|ref|ZP_21522481.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|433306289|gb|AGB32101.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|445623512|gb|ELY76922.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
Length = 467
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 24/158 (15%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R LLE L DL Q + G L +V+G + ++ E + T + + +D L +RD
Sbjct: 46 RVATLLEALEDLRSQYRERGSDLLVVRGEASAAVPEVATEHDATTVVWNEDYSGLARERD 105
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRF 131
+ V+ + I + +P + G+ Y+ F
Sbjct: 106 RAVRAALEDEGIAAESVHDAIHHEPGSITPNQGD---------------------HYSVF 144
Query: 132 RFLLECLADLDRQ---LKSHGGQLFIVQGSPISIFQKL 166
+ + D D++ + L V G PI L
Sbjct: 145 SYFWKKWRDRDKREPAPEPAAADLAAVSGEPIPTLADL 182
>gi|365866676|ref|ZP_09406283.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. W007]
gi|364003865|gb|EHM24998.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. W007]
Length = 451
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
NR FL +CLA LD L+ GG+L + +G ++ +++ E + +R
Sbjct: 45 NRLAFLADCLAALDAGLRHRGGRLVVRRGEAAAVVRRVAEETGAASVHVAAGVSRYAARR 104
Query: 71 DKKVKKWCAENN--ITVKEFVSHTLWDPEVVIQTNG 104
++++++ A + V + V L P V+ T G
Sbjct: 105 EERIREALAGTGCELRVHDAVVTAL-APGRVVPTGG 139
>gi|182439675|ref|YP_001827394.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|178468191|dbj|BAG22711.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 455
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
NR FL +CLA LD L+ GG+L + +G + +++ E ++ +R
Sbjct: 49 NRLAFLADCLAALDAGLRHRGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRYAARR 108
Query: 71 DKKVKKWCAENNITVKEFVSH----TLWDPEVVIQTNG 104
++++++ A+ T +E H T P V+ T G
Sbjct: 109 EQRIREALAD---TGRELHVHDAVVTALAPGRVVPTGG 143
>gi|407278627|ref|ZP_11107097.1| deoxyribodipyrimidine photo-lyase [Rhodococcus sp. P14]
Length = 454
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R FL+ CL LD L GG+L + G P ++ L REL+ + D
Sbjct: 46 GSPRRTFLMRCLRALDEDL---GGRLLVTHGDPATVVPALARELDADAVHVSADRGPYGT 102
Query: 69 KRDKKVKK 76
+RD V++
Sbjct: 103 RRDDAVER 110
>gi|326780339|ref|ZP_08239604.1| Deoxyribodipyrimidine photo-lyase [Streptomyces griseus XylebKG-1]
gi|326660672|gb|EGE45518.1| Deoxyribodipyrimidine photo-lyase [Streptomyces griseus XylebKG-1]
Length = 455
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
NR FL +CLA LD L+ GG+L + +G + +++ E ++ +R
Sbjct: 49 NRLAFLADCLAALDAGLRHRGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRYAARR 108
Query: 71 DKKVKKWCAENNITVKEFVSH----TLWDPEVVIQTNG 104
++++++ A+ T +E H T P V+ T G
Sbjct: 109 EQRIREALAD---TGRELHVHDAVVTALAPGRVVPTGG 143
>gi|172039222|ref|YP_001805723.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354552505|ref|ZP_08971813.1| cryptochrome, DASH family [Cyanothece sp. ATCC 51472]
gi|171700676|gb|ACB53657.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353555827|gb|EHC25215.1| cryptochrome, DASH family [Cyanothece sp. ATCC 51472]
Length = 491
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +A+L + L+ G L + +G P I +L +EL + F +
Sbjct: 55 FPKT---GNFRGQFLLESVANLRQSLQDLGSNLIVRKGYPEKIIPELIKELEIDAVYFHE 111
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTL--WD 95
+ + +K+VK+ + V+ F TL WD
Sbjct: 112 EVTSEETTVEKEVKQALKPLKVKVQGFWGSTLYHWD 147
>gi|357112286|ref|XP_003557940.1| PREDICTED: blue-light photoreceptor PHR2-like [Brachypodium
distachyon]
Length = 447
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
G R FLL+ +ADL R L++ GG L + G P + +L R + +
Sbjct: 155 RTGPYRANFLLDSVADLRRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVSRD 214
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLW 94
+ + KV + + + VK F TL+
Sbjct: 215 ECRTEDKVSQAIKKEGVEVKYFWGSTLY 242
>gi|406596892|ref|YP_006748022.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii ATCC 27126]
gi|406374213|gb|AFS37468.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii ATCC 27126]
Length = 435
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 117 TVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 176
T + G +G +R FLL+ L DL RQL G L IV+G P +L + ++ L
Sbjct: 55 TPTTYGFAPMGKHRHTFLLQTLVDLKRQLAKLGHDLLIVKGDPAECLVQLMKSGQYSHLG 114
Query: 177 FEQDC 181
+ C
Sbjct: 115 VSEHC 119
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G +G +R FLL+ L DL RQL G L IV+G P +L + ++ L + C
Sbjct: 60 GFAPMGKHRHTFLLQTLVDLKRQLAKLGHDLLIVKGDPAECLVQLMKSGQYSHLGVSEHC 119
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99
+ VK++ +++TV E + L+D + +
Sbjct: 120 GFDERAQLNAVKRFF--DSVTVIETPTFGLFDAQTL 153
>gi|94311677|ref|YP_584887.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Cupriavidus
metallidurans CH34]
gi|93355529|gb|ABF09618.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Cupriavidus
metallidurans CH34]
Length = 513
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+L L L R L+ GG L ++ G+ +L EL + D E + RD
Sbjct: 77 RVEFILRSLEPLRRALEDSGGGLIVLDGTARQAIPRLAAELEVEAVFANHDYEPAANDRD 136
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+ V++ A ++ + F +++ + ++ G
Sbjct: 137 EAVRRTLAADSRVLLTFKDQVIFERDEILTGQG 169
>gi|428306556|ref|YP_007143381.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
gi|428248091|gb|AFZ13871.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
Length = 474
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 40/97 (41%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ R +++ CL L ++ G +L I+ P + KL LN + + D E
Sbjct: 47 VAPARVTYMIGCLESLQQRYAEVGSELLILFNEPTTAIPKLAESLNAKAVFWNWDVEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+RD+ + E I + F L PE + +G
Sbjct: 107 KERDRTILAALKEKGIATQNFWDQLLHSPEEIRSGSG 143
>gi|255531982|ref|YP_003092354.1| deoxyribodipyrimidine photo-lyase [Pedobacter heparinus DSM 2366]
gi|255344966|gb|ACU04292.1| Deoxyribodipyrimidine photo-lyase [Pedobacter heparinus DSM 2366]
Length = 434
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R ++ + L ++ QLK +L G+PI IF L + + +D E L +RD
Sbjct: 53 RVDYIDQALLKINTQLKLSKTRLNTFHGNPIEIFNMLSEQYAVQAVFCNRDYEPLTIQRD 112
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
++ ++ N I K F ++D V++ +G P Y Y
Sbjct: 113 VEIYEFFKRNQIPFKAFKDQVIFDKSDVLKNDG-TPYTVYTPY 154
>gi|407683883|ref|YP_006799057.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str.
'English Channel 673']
gi|407245494|gb|AFT74680.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str.
'English Channel 673']
Length = 435
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 117 TVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 176
T + G +G +R FLL+ L DL RQL G L IV+G P +L + ++ L
Sbjct: 55 TPTTYGFAPMGKHRHTFLLQTLVDLKRQLAKLGHDLLIVKGDPAECLVQLMKSGQYSHLG 114
Query: 177 FEQDC 181
+ C
Sbjct: 115 VSEHC 119
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G +G +R FLL+ L DL RQL G L IV+G P +L + ++ L + C
Sbjct: 60 GFAPMGKHRHTFLLQTLVDLKRQLAKLGHDLLIVKGDPAECLVQLMKSGQYSHLGVSEHC 119
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99
+ VK++ +++TV E + L+D + +
Sbjct: 120 GFDERAQLNTVKRFF--DSVTVIETPTFGLFDAQTL 153
>gi|33860843|ref|NP_892404.1| DNA photolyase [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|33633785|emb|CAE18744.1| putative DNA photolyase [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 478
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 13/164 (7%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FL L +L K G +L + +G P+ I +L ++++ + + + E RD
Sbjct: 51 RAWFLGNSLQELGNNWKKMGSRLVLEEGDPVLIIPQLAKKIDAKFVFWNRSIEPYEINRD 110
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN---VPPLTYKMYLHTVSCIGTMHIGY 128
++K E NI V E H L +P + N N V YK ++ +G+
Sbjct: 111 LEIKNNLKEQNIQVIETWDHLLIEPLKIFSGNNNPYSVYGPFYKNLKSKINLLGSFEQDK 170
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 172
F+F D+D + K + S S+ +K + + F
Sbjct: 171 VVFQF-----KDIDNKFKENKA-----INSSDSVLEKFIKNIKF 204
>gi|448726891|ref|ZP_21709278.1| deoxyribodipyrimidine photolyase [Halococcus morrhuae DSM 1307]
gi|445793190|gb|EMA43777.1| deoxyribodipyrimidine photolyase [Halococcus morrhuae DSM 1307]
Length = 465
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 38/94 (40%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FLL L L + G L+ +G P + + E +L + D L +RD
Sbjct: 45 RVAFLLAALDSLQESYRERGSDLYTAEGDPAEVLPGIADEHGVDELFWNHDYTGLSQERD 104
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
++V+ + I + F +P + +G+
Sbjct: 105 ERVRAALDDAGIAHEAFHDALHHEPGTITTNDGD 138
>gi|254430204|ref|ZP_05043907.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
gi|197624657|gb|EDY37216.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
Length = 504
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 3 PGTMH---IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59
PG + + R FL E L +L + ++ G +L +++G P + +L L L +
Sbjct: 44 PGILEAADLAPARLWFLAESLRELAERWRAAGSRLLVLRGDPAVVLPQLAAALRAPVLAW 103
Query: 60 EQDCEALWHKRDKKV 74
+D E +RD++V
Sbjct: 104 NRDVEPYGRERDRRV 118
>gi|392391321|ref|YP_006427924.1| deoxyribodipyrimidine photolyase [Ornithobacterium rhinotracheale
DSM 15997]
gi|390522399|gb|AFL98130.1| deoxyribodipyrimidine photolyase [Ornithobacterium rhinotracheale
DSM 15997]
Length = 457
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+L+ L L + L+ L I++G+P I++ L ++ + + +D E +RD
Sbjct: 73 RVGFILQQLLALKKSLRKLNSDLLILKGNPSEIWKDLAQDSHLKAVFTNRDYEPYALQRD 132
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+KV++ + NI F +++ V+ G YK+Y
Sbjct: 133 EKVQRLLTQKNIEFHTFKDQIIFEKNEVLTQAGE----PYKVY 171
>gi|332141439|ref|YP_004427177.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551461|gb|AEA98179.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 165
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G +R FLL+ L+DL +QL G +L I++G+ +L +T L Q C
Sbjct: 64 MGKHRHTFLLQTLSDLKQQLNQRGHELLILKGNTAECIVQLLNAGGYTHLGVSQHCGFDE 123
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVV---IQTNGNVPP 108
+ VK++ N + V E + L+D EV+ ++T+ +V P
Sbjct: 124 TAQLNTVKRFF--NTLRVIETPTFGLFDAEVLPFDMKTDVSVRP 165
Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
+ G +G +R FLL+ L+DL +QL G +L I++G+ +L +T L
Sbjct: 57 AAFGFSPMGKHRHTFLLQTLSDLKQQLNQRGHELLILKGNTAECIVQLLNAGGYTHLGVS 116
Query: 179 QDC 181
Q C
Sbjct: 117 QHC 119
>gi|428770667|ref|YP_007162457.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
gi|428684946|gb|AFZ54413.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
Length = 473
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R ++LL CL L + + G L I +P I L +L + + D E
Sbjct: 44 IAPARVKYLLGCLEALKTKYQKLGSDLLIFHNTPEEIIPSLAEKLKADAVYWNLDVEPFS 103
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDP-EVVIQTN 103
RDK V + E +I + F L P E++ ++N
Sbjct: 104 RHRDKNVSQALKEKSIETQTFWDQLLHSPGEILSKSN 140
>gi|383827438|ref|ZP_09982538.1| deoxyribodipyrimidine photo-lyase [Mycobacterium xenopi RIVM700367]
gi|383330482|gb|EID09004.1| deoxyribodipyrimidine photo-lyase [Mycobacterium xenopi RIVM700367]
Length = 456
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
+ + + ++ N+ FL++ L DLD +L+ GG+L + +G + ++ EL+ T +
Sbjct: 39 AILSSDYVTPNKAAFLVDALTDLDDELRRRGGRLIVRRGQFVDEVLRVVDELSITDVHIA 98
Query: 179 QDCEAY 184
D AY
Sbjct: 99 ADVSAY 104
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
++ N+ FL++ L DLD +L+ GG+L + +G + ++ EL+ T + D A
Sbjct: 45 YVTPNKAAFLVDALTDLDDELRRRGGRLIVRRGQFVDEVLRVVDELSITDVHIAADVSA 103
>gi|149279053|ref|ZP_01885187.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter
sp. BAL39]
gi|149230332|gb|EDM35717.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter
sp. BAL39]
Length = 410
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
T+ G +R +FLLE +A L + GG L ++ G P + L + +++ ++
Sbjct: 30 TVKTGMSRTKFLLESVAALRASFQQLGGDLLVLYGKPEELMAGLVDQYEISEVYHHREVA 89
Query: 65 ALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
+ KV+ + I ++ F+ HTL++ E
Sbjct: 90 PEETQISTKVEDLLWKLKINLRHFIGHTLYNKE 122
>gi|119476980|ref|ZP_01617261.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2143]
gi|119449787|gb|EAW31024.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2143]
Length = 528
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HKRD 71
+ F+ +CL DL+ + S G L I G + + + + N + ++ LW ++RD
Sbjct: 72 WHFIHDCLTDLNTAVSSLGQPLVIKVGDVCAAIENIHSDYNVQGIYAHEETGNLWTYQRD 131
Query: 72 KKVKKWCAENNITVKEF 88
V+K C NNI + E+
Sbjct: 132 INVRKICELNNIPIHEY 148
>gi|284046106|ref|YP_003396446.1| deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
gi|283950327|gb|ADB53071.1| Deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
Length = 476
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+L+CL +LD L+ G L + +G P L RE+ + + D RD
Sbjct: 52 RTAFMLDCLRELDADLRERGSGLVVREGRPERELPALAREIGAAAVHWASDATPYAIARD 111
Query: 72 KKVKK 76
++V+
Sbjct: 112 RRVRS 116
>gi|325981909|ref|YP_004294311.1| deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212]
gi|325531428|gb|ADZ26149.1| Deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212]
Length = 434
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 12 RFRFLLECLADLDRQLKS-HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
R F+ + L L QL+ + + + G+ I +F ++ R + T + D E +R
Sbjct: 52 RVTFIYDTLQTLRTQLEERYSSSIALYYGNSIEVFDQILRLHSVTAVYANHDYEPYARER 111
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLH 116
D+ V +W ++ + H L++ + + +G P + Y Y+H
Sbjct: 112 DEAVCEWLKARSVAFNTYKDHVLFEKNEIAKDSGG-PYVVYTPYMH 156
>gi|409408986|ref|ZP_11257421.1| deoxyribodipyrimidine photo-lyase [Herbaspirillum sp. GW103]
gi|386432308|gb|EIJ45136.1| deoxyribodipyrimidine photo-lyase [Herbaspirillum sp. GW103]
Length = 488
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HKRDKK 73
FLL LA L R+L+ G L + G + + + L+R T L ++ W + RD
Sbjct: 52 FLLRSLAPLQRELQRCGLPLLVRVGEAVQVLESLRRAWGVTHLFSHEETGPAWSYARDIS 111
Query: 74 VKKWCAENNITVKEF 88
V +WC + E+
Sbjct: 112 VNRWCRIQGVQWLEW 126
>gi|424813932|ref|ZP_18239110.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
gi|339757548|gb|EGQ42805.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
Length = 471
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 7 HIGYNRFRFLLECLADLDRQL-KSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
+GY R +F + L +L++ L ++ G QL + G P Q++ E + +D
Sbjct: 44 ELGYPRVKFWHDSLKELEQDLSETDGKQLVVRNGDPAEEIQRVVEETEADAVYHNRDYRP 103
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVP 107
KRD+KV+ E + VK F +++ E ++ TN P
Sbjct: 104 YSKKRDQKVED---EIEVPVKSFKDIVMFEKEEIL-TNSGTP 141
>gi|149925501|ref|ZP_01913765.1| deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
gi|149825618|gb|EDM84826.1| deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
Length = 453
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HKRDKK 73
F+ ECL DL +Q GG L G + + L + FT L Q+ ++RD+
Sbjct: 54 FVHECLDDLQQQFAKVGGYLHEELGEAVDVLAALHAQFKFTHLWAHQETTQFAQYQRDRA 113
Query: 74 VKKWCAENNITVKEF 88
V WC + E
Sbjct: 114 VAAWCKSEGVVFHEL 128
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 30/73 (41%)
Query: 109 LTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
L +Y+H S I H F+ ECL DL +Q GG L G + + L
Sbjct: 30 LVLPLYIHEPSQILDAHTARQHQLFVHECLDDLQQQFAKVGGYLHEELGEAVDVLAALHA 89
Query: 169 ELNFTKLCFEQDC 181
+ FT L Q+
Sbjct: 90 QFKFTHLWAHQET 102
>gi|317419959|emb|CBN81995.1| Cryptochrome DASH [Dicentrarchus labrax]
Length = 521
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKLCFEQDCEALWHKR 70
R RFLL+ + DL L S G L + QG P + L ++L + + + F ++ +
Sbjct: 59 RLRFLLDSIRDLRNTLLSKGSNLVVRQGKPEEVVADLIKQLGSVSAVAFHEEVTSEELNV 118
Query: 71 DKKVKKWCAENNITVKEFVSHTLW 94
+K VK CA+ + V HT W
Sbjct: 119 EKGVKDVCAQMKVKV-----HTCW 137
>gi|209524800|ref|ZP_03273346.1| cryptochrome, DASH family [Arthrospira maxima CS-328]
gi|376007766|ref|ZP_09784952.1| Cryptochrome DASH [Arthrospira sp. PCC 8005]
gi|423063001|ref|ZP_17051791.1| cryptochrome DASH family [Arthrospira platensis C1]
gi|209494679|gb|EDZ94988.1| cryptochrome, DASH family [Arthrospira maxima CS-328]
gi|375323871|emb|CCE20705.1| Cryptochrome DASH [Arthrospira sp. PCC 8005]
gi|406715580|gb|EKD10734.1| cryptochrome DASH family [Arthrospira platensis C1]
Length = 486
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G +G R +FLLE +ADL L+ G L + G P ++ L ++LN + + ++
Sbjct: 51 GFPKMGGFRGKFLLESVADLRHNLQKIGSNLLVRIGEPETVIFDLVKQLNIDAVYYHKEV 110
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
++ ++K + VK F TL+ P+
Sbjct: 111 TTEELAVERALEKALTPLGVEVKSFWGATLYHPK 144
>gi|427718644|ref|YP_007066638.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 7507]
gi|427351080|gb|AFY33804.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 7507]
Length = 495
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 42/109 (38%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R +++ CL L ++ G QL I+ P+ L LN + + D E +RD
Sbjct: 68 RVTYMIGCLQALQQRYAEAGSQLLILHADPVVAIPALAEALNAKAVFWNWDVEPYSQERD 127
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
+ V E I + + + I+T GN P Y + S
Sbjct: 128 RTVIDALKEQGIAFLQQNWDQILNAPDEIRTGGNSPYTVYTPFWKNWSS 176
>gi|327274302|ref|XP_003221917.1| PREDICTED: cryptochrome DASH-like [Anolis carolinensis]
Length = 525
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKLCFE 60
FP T G R RFLLE + DL LK G L + +G P + + L +L + + F
Sbjct: 54 FPKT---GPFRLRFLLESVKDLRETLKKKGSNLVVRKGKPEDVVRDLIIQLGSVASVSFH 110
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLW 94
++ +K + + C E+ + V+ F TL+
Sbjct: 111 EEATKEELDVEKALIRVCTEHGVEVQTFWGSTLY 144
>gi|443244631|ref|YP_007377856.1| deoxyribodipyrimidine photolyase [Nonlabens dokdonensis DSW-6]
gi|442802030|gb|AGC77835.1| deoxyribodipyrimidine photolyase [Nonlabens dokdonensis DSW-6]
Length = 497
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL-CF 59
M H F F+ + L +++ +L + G L +V+ + + FQKL+ + +
Sbjct: 40 MILNDAHYSKRHFNFIKQSLENMNEKLNAVGSSLLVVESNALKAFQKLQSLFKIVNIYSY 99
Query: 60 EQDCEALWHKRDKKVKKWCAENNITVKEFVSH 91
++ + +KRD ++ KW +N I E +S+
Sbjct: 100 QETGLYITYKRDIELAKWFKKNAIPWTESISN 131
>gi|407939960|ref|YP_006855601.1| DNA photolyase FAD-binding protein [Acidovorax sp. KKS102]
gi|407897754|gb|AFU46963.1| DNA photolyase FAD-binding protein [Acidovorax sp. KKS102]
Length = 523
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF-TKLCFEQDCEALWHKRD 71
+ F+ E L DL + L+ G L + G + + +L F T + E+ A + RD
Sbjct: 50 YHFVQESLHDLAQALQRRGATLQVAVGEVVDVLARLHALAPFHTLVAHEETGNAHTYARD 109
Query: 72 KKVKKWCAENNITVKEFVSHTL 93
+ V +WC + +E+ H +
Sbjct: 110 QAVGRWCRTQGVAWREWPQHGV 131
>gi|255261881|ref|ZP_05341223.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62]
gi|255104216|gb|EET46890.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62]
Length = 473
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F +E L DR L G +L + +G + + +K+ E + + + + L +RD
Sbjct: 53 RLGFSVEAL---DRSLHGTGSRLVLRRGRALDVLRKVITETGAGAVYWSRLYDPLSKERD 109
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
VK ++ +T + F H L++P V G
Sbjct: 110 TAVKSALKDDGVTAQSFAGHLLFEPWTVETKTGG 143
>gi|443244632|ref|YP_007377857.1| deoxyribodipyrimidine photo-lyase [Nonlabens dokdonensis DSW-6]
gi|442802031|gb|AGC77836.1| deoxyribodipyrimidine photo-lyase [Nonlabens dokdonensis DSW-6]
Length = 440
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 12 RFRFLLECLADLDRQLK-SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
R F+ E L + QL+ L + G P I++++ + + +D E +R
Sbjct: 52 RVSFIYEELQRMRSQLQQDQDSSLAMYYGKPQEIWKEIISSYDVDTVFTNRDYEPYAKER 111
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
D+++ + AE+NI K F +++ + V++ +G+ P + Y Y
Sbjct: 112 DEEIDQLLAEHNIDFKTFKDQVIYEKDEVVKNDGD-PYVVYTPY 154
>gi|261333249|emb|CBH16244.1| DNA repair enzyme, putative [Trypanosoma brucei gambiense DAL972]
Length = 568
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 7 HIGYNRFRFLLECLADLDR-QLKSHGGQLFIVQGSPISIFQKLKRE-LNFTKLCFEQDCE 64
+ G F FL + L LD QL GG+L ++GS + ++ + +L F +D
Sbjct: 71 YFGKACFEFLCQSLKHLDTVQL---GGRLVCLRGSDCDCLEVVRSSGYDIKQLGFNRDIT 127
Query: 65 ALWHKRDKKVKKWCAENNIT-VKEFVSHTLWDPEVVIQTNG 104
KRD ++++WC + + V + +TL P+VV NG
Sbjct: 128 PFARKRDLQLEEWCVKRGVRCVTSNMDYTLLPPDVVTNKNG 168
>gi|254471109|ref|ZP_05084512.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
gi|211960251|gb|EEA95448.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
Length = 471
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G +L L L+ LK GQL I +G P I L +E + F C
Sbjct: 43 GAREFGGATKNWLYYSLKALNESLK---GQLLIRRGDPAVIINSLIQETGAAGV-FWNRC 98
Query: 64 EALWH-KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
W + D ++K EN IT K F LW+P V + +G+
Sbjct: 99 YEPWRVEHDAQLKTDLEENGITAKSFNGSLLWEPWQVGKPDGS 141
>gi|307945306|ref|ZP_07660642.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
gi|307771179|gb|EFO30404.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
Length = 486
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
+ IG +L L L QL G L +++G P ++ Q+L E + + + +
Sbjct: 50 SQAIGAAGKWWLHHSLTALREQL----GDLVVLRGDPATVLQELALETKAEAVRWNRAYD 105
Query: 65 ALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
+RDKK+K E+ + VK F + L +P + +G+ +YK+Y H +
Sbjct: 106 EYGIERDKKIKTELRESGLMVKSFKGNVLHEPWDIKTGSGS----SYKVYSHYWRAV 158
>gi|86141641|ref|ZP_01060187.1| deoxyribodipyrimidine photolyase-class I [Leeuwenhoekiella
blandensis MED217]
gi|85832200|gb|EAQ50655.1| deoxyribodipyrimidine photolyase-class I [Leeuwenhoekiella
blandensis MED217]
Length = 434
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 12 RFRFLLECLADLDRQLKS-HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
R F+ E L + +L+ HG + + G +I+++L + + D E +R
Sbjct: 51 RVTFIFETLQKMRDELQEKHGSSIALYHGKSETIWKQLLEDYKVDTVFTNHDYEPYALER 110
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
DKK+KK + ++ + F +++ + V++ +G+ P + Y Y
Sbjct: 111 DKKIKKLLEDQEVSFETFKDQVIFEKDEVVKGDGD-PYVVYTPY 153
>gi|430807586|ref|ZP_19434701.1| deoxyribodipyrimidine photo-lyase [Cupriavidus sp. HMR-1]
gi|429500109|gb|EKZ98493.1| deoxyribodipyrimidine photo-lyase [Cupriavidus sp. HMR-1]
Length = 518
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+L L L R L+ GG L ++ G+ +L EL + D E + RD
Sbjct: 77 RVEFILRTLEPLRRALEDSGGGLIVLDGTARQAIPRLAAELEVEAVFANHDYEPAANARD 136
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
V++ A ++ + F +++ + ++ G
Sbjct: 137 DAVRRTLAADSRVLLTFKDQVIFERDEILTGQG 169
>gi|365960525|ref|YP_004942092.1| deoxyribodipyrimidine photo-lyase [Flavobacterium columnare ATCC
49512]
gi|365737206|gb|AEW86299.1| deoxyribodipyrimidine photo-lyase [Flavobacterium columnare ATCC
49512]
Length = 428
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ E L ++RQLK+ L I G+P+ IF +L + + D E KRD
Sbjct: 48 RVSFIHEQLQYINRQLKAVNKSLAIFYGNPVEIFSELITKHKIENVYTNHDYEPAARKRD 107
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
K + + + + K +++ +++ N P + Y Y
Sbjct: 108 KAINELLKSHQVAFKTCKDQVIFEKTEILK-NNQTPYVVYTSY 149
>gi|88860348|ref|ZP_01134986.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
tunicata D2]
gi|88817546|gb|EAR27363.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
tunicata D2]
Length = 500
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H +RF+ + LADL++QL Q++I I++ Q+L + L Q+ L
Sbjct: 47 HYTARHWRFVWQSLADLNQQLARFKTQIYIFSEPMIALLQRLGEQFEIRGLFSHQEI-GL 105
Query: 67 WHK--RDKKVKKWCAENNITVKE 87
+ RDK V WC N I E
Sbjct: 106 NNTFMRDKAVSAWCHSNKIVWHE 128
>gi|71748528|ref|XP_823319.1| deoxyribodipyrimidine photolyase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70832987|gb|EAN78491.1| deoxyribodipyrimidine photolyase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 568
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 7 HIGYNRFRFLLECLADLDR-QLKSHGGQLFIVQGSPISIFQKLKRE-LNFTKLCFEQDCE 64
+ G F FL + L LD QL GG+L ++GS + ++ + +L F +D
Sbjct: 71 YFGKACFEFLCQSLKHLDTVQL---GGRLVCLRGSDCDCLEVVRSSGYDIKQLGFNRDIT 127
Query: 65 ALWHKRDKKVKKWCAENNIT-VKEFVSHTLWDPEVVIQTNG 104
KRD ++++WC + + V + +TL P+VV NG
Sbjct: 128 PFARKRDLQLEEWCVKRGVRCVTSNMDYTLLPPDVVTNKNG 168
>gi|357403751|ref|YP_004915675.1| deoxyribodipyrimidine photo-lyase [Methylomicrobium alcaliphilum
20Z]
gi|351716416|emb|CCE22076.1| deoxyribodipyrimidine photo-lyase [Methylomicrobium alcaliphilum
20Z]
Length = 453
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDK 72
+F+L+ L DL Q + G L IV+G P I + + +D RD
Sbjct: 55 LQFMLQSLDDLREQFRERGACLTIVRGEPEKIVKDWVLACGIEAVFVNRDYTPFSRHRDY 114
Query: 73 KVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGY---- 128
++++ C E +I L +PE ++++G+V YK++ + + +G
Sbjct: 115 RLQQVCIELDIAWHSCADVLLNEPEQALKSDGSV----YKVFTAFYNNARRIPVGLPQTL 170
Query: 129 --NRFRFLLEC-LADLDRQLKSHGGQLFIVQGSPISIFQKLK 167
RF EC L D + + G L + ++IF L+
Sbjct: 171 AEGRFCVPPECPLYDYEPLKTNAGPNLRGGRRQALAIFDALE 212
>gi|254373814|ref|ZP_04989297.1| hypothetical protein FTDG_01598 [Francisella novicida GA99-3548]
gi|151571535|gb|EDN37189.1| hypothetical protein FTDG_01598 [Francisella novicida GA99-3548]
Length = 499
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ + ++ FL ECL +L+ +L G L I+ G + IF++L ++ + Q+ W
Sbjct: 43 MSHRQYLFLSECLEELNTELTKLGQSLTIMLGDAVEIFEQLIQKYPIKNVWSNQETWNNW 102
Query: 68 -HKRDKKVKKWCAENNIT 84
++RD K++K+ +NNI
Sbjct: 103 TYQRDIKLEKFFKQNNIA 120
>gi|147902555|ref|NP_001084438.1| cryptochrome DASH [Xenopus laevis]
gi|82239825|sp|Q75WS4.1|CRYD_XENLA RecName: Full=Cryptochrome DASH
gi|41688006|dbj|BAD08601.1| cryptochrome dash [Xenopus laevis]
Length = 523
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKLCFE 60
FP T G +R +FLLE + DL LK G L + +G P + + L ++L N + +
Sbjct: 53 FPKT---GPHRLKFLLESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLH 109
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
++ + VK+ C I + F TL+ E + + + P Y + V
Sbjct: 110 EEATKEETDVESAVKQACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVET 169
Query: 121 IGTM 124
G +
Sbjct: 170 QGKV 173
>gi|345003555|ref|YP_004806409.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SirexAA-E]
gi|344319181|gb|AEN13869.1| Deoxyribodipyrimidine photo-lyase [Streptomyces sp. SirexAA-E]
Length = 459
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
NR FL +CL DLD L+ GG+L I G + +++ E ++ D +R
Sbjct: 49 NREAFLADCLRDLDAGLRDRGGRLVIRSGEIVDEVRRVVTETGAGEVHLAADVSGHAQRR 108
Query: 71 DKKVKKWCAENN--ITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
++++++ A + V + V + VV +G + Y + S +G
Sbjct: 109 EERLREALASAGCRLRVHDAVVTAVAPGAVVPSGSGKDHFAVFTPYFRSWSQVG 162
>gi|150026082|ref|YP_001296908.1| deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
psychrophilum JIP02/86]
gi|149772623|emb|CAL44106.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
psychrophilum JIP02/86]
Length = 430
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R +FLLE L DLD+ L++ G L I +G P K+ +E K+ +++
Sbjct: 48 GFKKTGSFRAQFLLESLQDLDKNLRAIGSGLVITKGKPEIEIPKIAKEYKAQKVFSKREV 107
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
K +K V+ + ++ F + TL+ E + + N+P +
Sbjct: 108 SFEEKKTEKMVQNELFKLRCELETFSTSTLYHAEDLPFSIRNIPDV 153
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%)
Query: 97 EVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ 156
+ ++Q+ +P + + G G R +FLLE L DLD+ L++ G L I +
Sbjct: 23 KAILQSEQIIPVYCFDDSHFETTKYGFKKTGSFRAQFLLESLQDLDKNLRAIGSGLVITK 82
Query: 157 GSPISIFQKLKRELNFTKL 175
G P K+ +E K+
Sbjct: 83 GKPEIEIPKIAKEYKAQKV 101
>gi|186473227|ref|YP_001860569.1| deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815]
gi|184195559|gb|ACC73523.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815]
Length = 504
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+L + +LDR L+ GG L ++ G P+ KL +L + D E +RD
Sbjct: 72 RIEFILASVEELDRSLEEGGGALIVLHGDPVDAIPKLAAQLPVDAVFTNHDYEPSAIERD 131
Query: 72 KKV 74
+ V
Sbjct: 132 ETV 134
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
R F+L + +LDR L+ GG L ++ G P+ KL +L + D E
Sbjct: 72 RIEFILASVEELDRSLEEGGGALIVLHGDPVDAIPKLAAQLPVDAVFTNHDYE 124
>gi|295706162|ref|YP_003599237.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
gi|294803821|gb|ADF40887.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
Length = 475
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
+L L D ++ G L + +G+P + QKL + N + + + E KRDK++
Sbjct: 51 WLHHALNDFKNSIEKIQGTLIVQKGNPKDVLQKLLHQTNAQDIYWNRRYEPHVLKRDKEL 110
Query: 75 KKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+ + +E I ++ F L +P + + NG+
Sbjct: 111 QAFFSEQQINIRTFEGFLLHEPWKITKENGD 141
>gi|256374682|ref|YP_003098342.1| deoxyribodipyrimidine photo-lyase [Actinosynnema mirum DSM 43827]
gi|255918985|gb|ACU34496.1| Deoxyribodipyrimidine photo-lyase [Actinosynnema mirum DSM 43827]
Length = 421
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R FL CL LD +L GG+L +V+G P+ + + RE+ + D
Sbjct: 46 GKPRTDFLHRCLKSLDDRL---GGRLMVVEGDPVEVVPAVAREIGAETVHVSADTGPYGR 102
Query: 69 KRDKKV 74
+RD+ V
Sbjct: 103 RRDEAV 108
>gi|326799093|ref|YP_004316912.1| deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21]
gi|326549857|gb|ADZ78242.1| Deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21]
Length = 437
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 45/93 (48%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ L +++QL+ + P ++++ +E + + F D E KRD
Sbjct: 55 RVSFIHRELRAINKQLEQQSSGIAFYHDEPNKAWEEIVKEFDPIAVYFNHDYEPYARKRD 114
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
K++ + + +I V F +++ E V+++NG
Sbjct: 115 KEISDFLRQYHIAVYTFKDQVIFEKEEVLKSNG 147
>gi|322369279|ref|ZP_08043844.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus
DX253]
gi|320551011|gb|EFW92660.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus
DX253]
Length = 464
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Query: 1 MFPGTM--HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 58
+F G + H R F+L L L + GG L +++G P ++ + ++
Sbjct: 29 VFDGAVLSHAAPPRVSFMLSALESLRESYRERGGDLLVLRGDPREEIPRIAAAADADRVV 88
Query: 59 FEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+ +D L +RD V+ ++ I + F L P + G+
Sbjct: 89 WNRDYSGLAKERDADVRDALSDAGIERRAFHDALLHTPGSITTNQGD 135
>gi|395802067|ref|ZP_10481321.1| deoxyribodipyrimidine photo-lyase [Flavobacterium sp. F52]
gi|395435798|gb|EJG01738.1| deoxyribodipyrimidine photo-lyase [Flavobacterium sp. F52]
Length = 431
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + L ++ +L + I +G +++ L + + + F +D E KRD
Sbjct: 53 RVTFIYDSLQKVNSELNKLDSSILIKKGKTKDVWKSLIEKFDIQSVFFNKDYEPFAIKRD 112
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+ ENNI + H +++ + + + +GN P Y Y
Sbjct: 113 TAITALLKENNIETFFYKDHVIFEEKEITKADGN-PYTVYTPY 154
>gi|448336574|ref|ZP_21525671.1| deoxyribodipyrimidine photolyase [Natrinema pallidum DSM 3751]
gi|445628896|gb|ELY82195.1| deoxyribodipyrimidine photolyase [Natrinema pallidum DSM 3751]
Length = 469
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R LLE L L ++HG L +V+G ++ ++ + + + +D L
Sbjct: 41 HASPVRVACLLEALESLRSWYRAHGSDLLVVRGEASTVVPRVATTHDAATVVWNEDYSGL 100
Query: 67 WHKRDKKVKKWCAENNITVK 86
+RD+ V+ A+ IT +
Sbjct: 101 ARERDQAVRTALADEGITAE 120
>gi|448321022|ref|ZP_21510503.1| deoxyribodipyrimidine photolyase [Natronococcus amylolyticus DSM
10524]
gi|445604422|gb|ELY58370.1| deoxyribodipyrimidine photolyase [Natronococcus amylolyticus DSM
10524]
Length = 472
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVK 75
LLE LADL + G L +V+G+ + L E + ++ + +D L +RD+ V+
Sbjct: 49 LLEALADLRAWYRDRGSDLLVVRGNAREVIPSLAAERDAARVVWNEDYSGLAAERDEAVR 108
Query: 76 KWCAENNI 83
E I
Sbjct: 109 AALEEEGI 116
>gi|402819360|ref|ZP_10868928.1| hypothetical protein IMCC14465_01620 [alpha proteobacterium
IMCC14465]
gi|402511507|gb|EJW21768.1| hypothetical protein IMCC14465_01620 [alpha proteobacterium
IMCC14465]
Length = 474
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P +G + + LA L+ LK GG+L +G P+ + QKL ++ + +
Sbjct: 39 PDDRSLGMAASWWRQQSLAKLEAALKKIGGKLSFYEGRPVEVLQKLSDFYEADEIVWNRQ 98
Query: 63 CEALWHKRDKKVKKW---CAENNITVKEFVSHTLWDPEVVIQTNGN 105
+ RDK++K+ NI K F + L++P ++ +G+
Sbjct: 99 YDGYSVSRDKEIKQTLPNSGTGNIECKSFNASLLFEPWLIQNKSGS 144
>gi|300864867|ref|ZP_07109715.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506]
gi|300337160|emb|CBN54865.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506]
Length = 482
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ R +++ CL +L R+ G QL I+Q P KL L + + D E
Sbjct: 47 VAPARVAYMIGCLQELQRRYLEAGSQLLILQAEPTQGIPKLAIALQAKAVFWNLDVEPYS 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99
+RD V + I V+ F L P+ +
Sbjct: 107 RERDDAVSNALKQAGIKVENFWDQLLHAPDEI 138
>gi|334121002|ref|ZP_08495078.1| Deoxyribodipyrimidine photo-lyase [Microcoleus vaginatus FGP-2]
gi|333455721|gb|EGK84364.1| Deoxyribodipyrimidine photo-lyase [Microcoleus vaginatus FGP-2]
Length = 504
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ R +++ CL L + + G QL I+Q P KL +N + + +D E
Sbjct: 47 VAPARVTYMIGCLQKLSSRYRELGSQLLIIQDDPSLGIPKLAIAINAKAVFWNRDVEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+RD V + I V+ F L P+ + +G P T
Sbjct: 107 KQRDLSVSNALQQAGIKVQNFWDQVLHAPDEI--RSGTKTPYT 147
>gi|410861788|ref|YP_006977022.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii AltDE1]
gi|410819050|gb|AFV85667.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii AltDE1]
Length = 474
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G M G +++ +L L L+++L H L I +G P ++ KL N + + F C
Sbjct: 44 GRMPGGASKW-WLHHSLKSLNKRLNGH---LQIFKGDPQTLIPKLMESFNASSI-FWNRC 98
Query: 64 EALWH-KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
W RDK +KK +++ F LW+P V++ +G
Sbjct: 99 YEPWQINRDKAIKKSLLDSDYEAHSFNGSLLWEPMKVLKKDG 140
>gi|352094732|ref|ZP_08955903.1| DNA photolyase FAD-binding [Synechococcus sp. WH 8016]
gi|351681072|gb|EHA64204.1| DNA photolyase FAD-binding [Synechococcus sp. WH 8016]
Length = 552
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HKRDKK 73
F E L DL L G L + G + +F++ R+ L ++ W ++RD++
Sbjct: 100 FCRESLLDLRLALAQLGQPLLVRTGDVLEVFERAHRQFGLDGLWSHEETGNGWTYQRDQR 159
Query: 74 VKKWCAENNITVKEF 88
V +WC ++ I KE
Sbjct: 160 VARWCRQHGIPWKEI 174
>gi|342184672|emb|CCC94154.1| putative deoxyribodipyrimidine photolyase [Trypanosoma congolense
IL3000]
Length = 567
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 5 TMHIGYNRFRFLLECLADLDR-QLKSHGGQLFIVQGSPISIFQKLKRE-LNFTKLCFEQD 62
++ G F FL + L L QL GG+L ++GS + + ++ + +L F D
Sbjct: 70 NLYFGNACFEFLCQSLRHLGGVQL---GGRLVCLRGSDVECLEAVRSAGYDIKQLGFNCD 126
Query: 63 CEALWHKRDKKVKKWCAENNIT-VKEFVSHTLWDPEVVIQTNGNVPP 108
+RD ++++WC N I V +TL+ PE++I NGN P
Sbjct: 127 ITPFARRRDVRLEEWCISNGIQCVTTNRDYTLFPPEMII--NGNREP 171
>gi|321451724|gb|EFX63284.1| hypothetical protein DAPPUDRAFT_335673 [Daphnia pulex]
Length = 141
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 46 QKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
QK +E N KL FE D E +D+++KK +++ V VSHT++D +V + NGN
Sbjct: 70 QKYFKEWNIKKLTFEVDIEPYAKTQDEEIKKLADHHSVPVVAKVSHTIYD--LVFKANGN 127
>gi|332141440|ref|YP_004427178.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551462|gb|AEA98180.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 474
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G M G +++ +L L L+++L H L I +G P ++ KL N + + F C
Sbjct: 44 GRMPGGASKW-WLHHSLKSLNKRLNGH---LQIFKGDPQTLIPKLMESFNASSI-FWNRC 98
Query: 64 EALWH-KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
W RDK +KK ++ F +LW+P V++ +G
Sbjct: 99 YEPWQINRDKAIKKSLLGSDYEAHSFNGSSLWEPMKVLKKDG 140
>gi|431797441|ref|YP_007224345.1| deoxyribodipyrimidine photolyase [Echinicola vietnamensis DSM
17526]
gi|430788206|gb|AGA78335.1| deoxyribodipyrimidine photolyase [Echinicola vietnamensis DSM
17526]
Length = 431
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + L L L++ G +++ G P+ IF++L E + + +D E RD
Sbjct: 52 RVAFIHQRLQQLKEALEAKGFSIWVKTGKPLEIFKQLVDENDIAAVYCNRDYEPYAISRD 111
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
K V + E I +F +++ + ++ +G+ YK+Y
Sbjct: 112 KAVNAFLKEKGIDFLDFKDQVIFEKDEILNESGDF----YKVY 150
>gi|163788107|ref|ZP_02182553.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales
bacterium ALC-1]
gi|159876427|gb|EDP70485.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales
bacterium ALC-1]
Length = 434
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 12 RFRFLLECLADLDRQLK-SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
R F+ E L ++ + L+ ++ + + G P ++ +L ++ N + D E +R
Sbjct: 52 RITFIHETLQNIRQTLQDNYRSSIAMHYGKPKEVYTQLIKDYNINSVYTNHDYEPYAKER 111
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT 117
D +VK AE+NI K + +++ +++ +G P Y Y+ +
Sbjct: 112 DTEVKSVLAEHNIEFKTYKDQVVFEKNEIVKKDG-APYKVYTPYMRS 157
>gi|118364198|ref|XP_001015321.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
thermophila]
gi|89297088|gb|EAR95076.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
thermophila SB210]
Length = 472
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ L+ + L+ HG + + + S F+ L E + + + +D E KRD
Sbjct: 66 RVEFIHNYLSQMQDNLRKHGSTMVVKHSNAESAFKSLMEEFDISCVFTNRDYEPYAKKRD 125
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNV 106
+++K+ I K+F +++ + V Q +G+
Sbjct: 126 QQIKEILNSKGIGFKDFKDQVIFEAKEVHQDDGSA 160
>gi|334132216|ref|ZP_08505977.1| Deoxyribodipyrimidine photolyase [Methyloversatilis universalis
FAM5]
gi|333442862|gb|EGK70828.1| Deoxyribodipyrimidine photolyase [Methyloversatilis universalis
FAM5]
Length = 483
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ +++LD L++ GG L + G + +L R+L + +D E RD
Sbjct: 58 RVEFIHASVSELDAALRALGGGLIVRHGRARGLIPRLARQLGVAAVLANRDYEPGALARD 117
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+ V A++ I F +++ + V+ T G P + Y
Sbjct: 118 RAVHDALAQDGIGFDTFKDQVIFECDEVL-TQGGKPFSVFTPY 159
>gi|323455593|gb|EGB11461.1| hypothetical protein AURANDRAFT_20741 [Aureococcus
anophagefferens]
Length = 529
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQG 39
+G R+RFLLE LADLD L+ G +L +V+G
Sbjct: 48 VGAPRYRFLLESLADLDASLRKRGSRLCVVRG 79
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQG 157
+G R+RFLLE LADLD L+ G +L +V+G
Sbjct: 48 VGAPRYRFLLESLADLDASLRKRGSRLCVVRG 79
>gi|322510730|gb|ADX06044.1| putative deoxyribodipyrimidine photo-lyase [Organic Lake
phycodnavirus 1]
Length = 443
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 14 RFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKK 73
+FL ECL +L ++ H I G +++ + + ++ + T + F QD KRDK
Sbjct: 54 QFLCECLEELKEKIGLH-----IFYGDYMNVIRSIHKDHHLTHIVFNQDYSPYSRKRDKT 108
Query: 74 VKKWCAENNI 83
+++WC I
Sbjct: 109 IEQWCQSEQI 118
>gi|218437085|ref|YP_002375414.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
gi|218169813|gb|ACK68546.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
Length = 475
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ R +L+ CL +L + + G QL I++G P L L + + D E
Sbjct: 47 VAPARVTYLIGCLQELQQNYQQAGSQLLILKGKPSQAIPILAESLKAQAVFWNLDVEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVI 100
RD++V E I ++F L P ++
Sbjct: 107 QTRDEQVSNALQEKGIATEKFWDQLLHAPGKIL 139
>gi|448328561|ref|ZP_21517870.1| deoxyribodipyrimidine photolyase [Natrinema versiforme JCM 10478]
gi|445615302|gb|ELY68951.1| deoxyribodipyrimidine photolyase [Natrinema versiforme JCM 10478]
Length = 468
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R LLE L DL + L +V+G ++ ++ E + T++ + +D L
Sbjct: 41 HASPVRVACLLEALEDLRSWYRDRESDLLVVRGEASAVVPEIAAEYDVTRVVWNEDYSGL 100
Query: 67 WHKRDKKVKKWCAENNITVK 86
+RD+ V+ E I +
Sbjct: 101 ARERDRAVRAALEEEGIAAE 120
>gi|428222871|ref|YP_007107041.1| DASH family cryptochrome [Synechococcus sp. PCC 7502]
gi|427996211|gb|AFY74906.1| cryptochrome, DASH family [Synechococcus sp. PCC 7502]
Length = 501
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE L DL + S G L I QG P + +L ++ T + F
Sbjct: 49 FPKT---GSFRAKFLLESLTDLRNKFISLGSNLIIRQGLPELVIPELAAQIQATDVYFHA 105
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ + K + K+ + +I + F +TL+ P+ + +P L
Sbjct: 106 EVTSEEIKVEAKLIDNLKKISIKSESFWGNTLYHPDALPFAIDRLPEL 153
>gi|344942901|ref|ZP_08782188.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
SV96]
gi|344260188|gb|EGW20460.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
SV96]
Length = 453
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 43/91 (47%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDK 72
+F+L+ + DL +QL+S GG+L + P + ++L + + +D +RD
Sbjct: 55 LQFMLQSIQDLQQQLQSAGGKLALYHALPEQVVRQLVEQQQIQAVFINRDYTPFSRRRDD 114
Query: 73 KVKKWCAENNITVKEFVSHTLWDPEVVIQTN 103
++ C + I + L +PE ++ +
Sbjct: 115 ELAAVCKQLGIALHTLPDSLLNEPEQAVKMD 145
>gi|149916244|ref|ZP_01904765.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. AzwK-3b]
gi|149809904|gb|EDM69755.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. AzwK-3b]
Length = 494
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HK 69
++ FL ECL DL L G L + G + + L+R L ++ W +
Sbjct: 45 RQYAFLTECLTDLREDLARAGLSLVLRVGDAVEVLDDLRRSFGAAHLVSHEETGNGWTYA 104
Query: 70 RDKKVKKWCAENNITVKE 87
RD++V W + E
Sbjct: 105 RDRRVAGWARSQGVVWHE 122
>gi|89890451|ref|ZP_01201961.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
gi|89517366|gb|EAS20023.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
Length = 442
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
R +F++E + DL +QL HG L + SP+++F + +E + T + +++
Sbjct: 62 RAQFIIEAIEDLRKQLDKHGIPLLVYHDSPVNVFPDIIKEYDITNIYLQKE 112
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
R +F++E + DL +QL HG L + SP+++F + +E + T + +++
Sbjct: 62 RAQFIIEAIEDLRKQLDKHGIPLLVYHDSPVNVFPDIIKEYDITNIYLQKE 112
>gi|260220871|emb|CBA28870.1| hypothetical protein Csp_A09300 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 529
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL-CFEQDCEALWHKRD 71
+ F LECL DL QLK G +L +V G + +L + F + E+ + RD
Sbjct: 65 YHFALECLRDLWVQLKELGLRLQLVAGDAPEVLARLHAKAPFMAIYSHEETGNDASYARD 124
Query: 72 KKVKKWCAENNI---------TVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
+ V +WC + V+ V+ +W + +G+ ++ LH VS
Sbjct: 125 RAVSRWCKAQGVDWHQYKQFGVVRGVVNRDVWHLQWTEHMSGSQ--VSLDGSLHAVS 179
>gi|334133742|ref|ZP_08507285.1| putative deoxyribodipyrimidine photo-lyase [Paenibacillus sp. HGF7]
gi|333608675|gb|EGL19964.1| putative deoxyribodipyrimidine photo-lyase [Paenibacillus sp. HGF7]
Length = 463
Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H G N L ++ L R+ + G L ++ G P ++ +L EL ++ D
Sbjct: 47 HSGVN----FLRHVSRLIREYREAGAHLEVLAGEPHAVVDQLLAELPIEEIVLHGDVTPY 102
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWD 95
RD+K+K + + V + HTL D
Sbjct: 103 ALVRDRKLKVSASARGVPVTTLIDHTLAD 131
>gi|456392517|gb|EMF57860.1| deoxyribodipyrimidine photolyase [Streptomyces bottropensis ATCC
25435]
Length = 453
Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
NR FL +CL DLD L+ GG+L + G + K+ E + ++ D AY
Sbjct: 49 NRLAFLADCLRDLDAGLRERGGRLVVRSGDLVEEVCKVAGEADADEVHLAADVSAY 104
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
NR FL +CL DLD L+ GG+L + G + K+ E + ++ D A H
Sbjct: 49 NRLAFLADCLRDLDAGLRERGGRLVVRSGDLVEEVCKVAGEADADEVHLAADVSAYAH 106
>gi|343496948|ref|ZP_08735033.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
gi|342820401|gb|EGU55224.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
Length = 483
Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL-CFEQDCEA 65
H +RF+ + + D+++QL +GG++ + G+ + +FQ + ++ L E+ +
Sbjct: 46 HYDERHWRFVWQSIEDINQQLAQYGGKVEVAFGNVLDVFQNIHQQHPIAGLYSHEEVGIS 105
Query: 66 LWHKRDKKVKKWCAENNITVKE 87
+RD+ V KWC +I E
Sbjct: 106 RTFERDRYVAKWCQSLDIQWHE 127
>gi|407687838|ref|YP_006803011.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407291218|gb|AFT95530.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 476
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 7/136 (5%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH-KRDKK 73
+L L+ L+++L H L I +G P ++ KL + N K F C W RDK
Sbjct: 54 WLHHSLSSLNKRLNGH---LQIFKGDPQTLIPKLMKSFN-AKGIFWNRCYEPWQINRDKT 109
Query: 74 VKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRF 133
+KK E++ LW+P V++ +G P + Y + C+ Y +
Sbjct: 110 IKKTLIEHDYEAHSCNGSLLWEPMKVLKKDG-TPYRVFTPY-YKKGCLQVEEPRYPKAPP 167
Query: 134 LLECLADLDRQLKSHG 149
AD+D S G
Sbjct: 168 ARITYADVDNDSDSDG 183
>gi|417948304|ref|ZP_12591451.1| deoxyribodipyrimidine photolyase [Vibrio splendidus ATCC 33789]
gi|342809959|gb|EGU45056.1| deoxyribodipyrimidine photolyase [Vibrio splendidus ATCC 33789]
Length = 497
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60
M H +RF+ + L ++ LK++G Q+ I+ GS + F+ ++ + +
Sbjct: 40 MLLNNAHYSERHWRFVWQSLQCMNLSLKAYGHQVSILHGSAMDCFEAIQSRYHIKNVFSH 99
Query: 61 QD----CEALWHKRDKKVKKWCAENNITVKEFV 89
Q+ C KRD ++ W E+NI +EF
Sbjct: 100 QEIGLNCT---FKRDMQLSAWLKEHNIPWQEFA 129
>gi|326799096|ref|YP_004316915.1| DASH family cryptochrome [Sphingobacterium sp. 21]
gi|326549860|gb|ADZ78245.1| cryptochrome, DASH family [Sphingobacterium sp. 21]
Length = 434
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 24/106 (22%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R +F+LE + DL L+S G L +V G P I L ++ ++
Sbjct: 49 GMHKTGVIRAKFILESVQDLRLSLRSLGADLLVVSGYPEEILPTLAERYQVKEVYHHREV 108
Query: 64 ------------EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
EALW KR + ++ F+ HTL+ E
Sbjct: 109 AKEETHISTLVEEALWKKR------------LNLRHFIGHTLYHKE 142
>gi|255038083|ref|YP_003088704.1| deoxyribodipyrimidine photo-lyase, partial [Dyadobacter fermentans
DSM 18053]
gi|254950839|gb|ACT95539.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
18053]
Length = 396
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R RFL+E +A+L ++ GG L I G+P +I +L + N + ++
Sbjct: 48 GFRRTGALRARFLIESVAELRENIRQKGGDLIIRTGAPEAIVAQLAEDYNADYVYTSKEI 107
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTL 93
+ + + K N+ +K F T+
Sbjct: 108 APQETRIESSLSKNLKTANVDIKLFWMDTM 137
Score = 39.3 bits (90), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 121 IGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 171
+G G R RFL+E +A+L ++ GG L I G+P +I +L + N
Sbjct: 47 LGFRRTGALRARFLIESVAELRENIRQKGGDLIIRTGAPEAIVAQLAEDYN 97
>gi|398812431|ref|ZP_10571188.1| deoxyribodipyrimidine photolyase [Variovorax sp. CF313]
gi|398077948|gb|EJL68890.1| deoxyribodipyrimidine photolyase [Variovorax sp. CF313]
Length = 500
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 42/94 (44%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ E L +L+ +L++ GG L + + + L REL + +D E +RD
Sbjct: 61 RVEFIRESLVELEAELRTLGGGLVVRHAAAVQEIPALARELGVQAVFANRDDEPDALERD 120
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+V A + + T++D + ++ G
Sbjct: 121 ARVFGALANAGVAFHTYKDSTVFDRDEILTQTGQ 154
>gi|88706143|ref|ZP_01103850.1| deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
gi|88699537|gb|EAQ96649.1| deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
Length = 488
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL-CFEQDCEA 65
H +RF+ E L D+ R+L++H L ++ G P IF+ L E + +E+
Sbjct: 44 HYDERHWRFVWESLRDMHRRLEAHPRSLRVLHGDPREIFRVLADEEQLHSVYSYEETGLE 103
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTL 93
RD+++ E +I KEF S+ +
Sbjct: 104 KTFARDRELAALFQERSIPWKEFPSNGV 131
>gi|329910859|ref|ZP_08275394.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
gi|327546064|gb|EGF31136.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
Length = 498
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC-EALWHKRDKK 73
F+ ECL L L+ GG+L + GS + +++ ++ F L Q+ ++RD++
Sbjct: 50 FIRECLDSLHAALQERGGELVEMTGSAPDMLEQIWQQQPFATLRSHQETGNRASYQRDEQ 109
Query: 74 VKKWCAENNITVKE 87
V WC + +T ++
Sbjct: 110 VAAWCRKRGVTWRQ 123
>gi|257058615|ref|YP_003136503.1| DASH family cryptochrome [Cyanothece sp. PCC 8802]
gi|256588781|gb|ACU99667.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802]
Length = 488
Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLL+ + +L + L+ G L I +G P I ++ +EL + F Q
Sbjct: 52 FPKT---GNFRSQFLLQSIDNLRKNLQQLGSNLVIRRGYPEKIIPEICQELAIDAVYFHQ 108
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ + K + ++K + + + F TL+ P+ + T +P L
Sbjct: 109 EVTSEEIKVETALEKALTQMGVKLNPFWGTTLYHPDDLPFTLAEIPEL 156
>gi|239986566|ref|ZP_04707230.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
11379]
Length = 451
Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
NR FL +CLADLD L+ GG+L + +G +++ + + +R
Sbjct: 45 NRLAFLADCLADLDTGLRDRGGRLIVRRGGTAREVKRVVEQTGADSVHIAAGVSGYAAQR 104
Query: 71 DKKVKKWCAENN--ITVKEFVSHTLWDPEVVIQTNG 104
++++++ A + V + V L P V+ T G
Sbjct: 105 EERIREALAGTGCELRVHDAVVTAL-APGRVVPTGG 139
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
NR FL +CLADLD L+ GG+L + +G +++ + + Y
Sbjct: 45 NRLAFLADCLADLDTGLRDRGGRLIVRRGGTAREVKRVVEQTGADSVHIAAGVSGY 100
>gi|291443506|ref|ZP_06582896.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
15998]
gi|291346453|gb|EFE73357.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
15998]
Length = 456
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
NR FL +CLADLD L+ GG+L + +G +++ + + +R
Sbjct: 50 NRLAFLADCLADLDTGLRDRGGRLIVRRGGTAREVKRVVEQTGADSVHIAAGVSGYAAQR 109
Query: 71 DKKVKKWCAENN--ITVKEFVSHTLWDPEVVIQTNG 104
++++++ A + V + V L P V+ T G
Sbjct: 110 EERIREALAGTGCELRVHDAVVTAL-APGRVVPTGG 144
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
NR FL +CLADLD L+ GG+L + +G +++ + + Y
Sbjct: 50 NRLAFLADCLADLDTGLRDRGGRLIVRRGGTAREVKRVVEQTGADSVHIAAGVSGY 105
>gi|434387598|ref|YP_007098209.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
gi|428018588|gb|AFY94682.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
Length = 478
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 12/108 (11%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ R +L+ CL L + + G QL V+G+P+ L L + + D E
Sbjct: 47 VAPARVTYLVGCLQSLAKDYRRAGSQLLFVEGNPVVKIPLLATTLKAQAVYWHLDIEPYS 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWD-----PEVVIQTNGNVPPLT 110
RD+ + + I V HT WD P +I GN P T
Sbjct: 107 QTRDESIATTLKSDGIEV-----HTNWDQLLHAPSEII--TGNKQPYT 147
>gi|167626681|ref|YP_001677181.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596682|gb|ABZ86680.1| Deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 499
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ + ++ FL ECL +L+ +L G L ++ G + +F++L ++ + Q+ W
Sbjct: 43 MSHRQYLFLSECLEELNTELTRLGQPLILMIGDAVEVFEQLIQQYPINSVWSHQETWNNW 102
Query: 68 -HKRDKKVKKWCAENNIT 84
++RD K++K+ +NNI
Sbjct: 103 TYQRDIKLEKFFKQNNIV 120
>gi|428776804|ref|YP_007168591.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Halothece sp. PCC 7418]
gi|428691083|gb|AFZ44377.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Halothece sp. PCC 7418]
Length = 483
Score = 40.0 bits (92), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FL E +A+L LK+ G L I G P I +L LN T L +
Sbjct: 50 FPKT---GSFRAQFLQESVANLRETLKNLGSNLMIRVGQPEIIIPELVTALNLTNLVYHA 106
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTL 93
+ A + +K + K +T+ + TL
Sbjct: 107 EVTAEEIRVEKALSKQLQSLGVTLTSYWGSTL 138
>gi|365877752|ref|ZP_09417247.1| deoxyribodipyrimidine photo-lyase [Elizabethkingia anophelis Ag1]
gi|442589479|ref|ZP_21008287.1| deoxyribodipyrimidine photo-lyase [Elizabethkingia anophelis R26]
gi|365754465|gb|EHM96409.1| deoxyribodipyrimidine photo-lyase [Elizabethkingia anophelis Ag1]
gi|442561089|gb|ELR78316.1| deoxyribodipyrimidine photo-lyase [Elizabethkingia anophelis R26]
Length = 432
Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R ++ + L ++ L + L + G P+ IF+ + + + +D E KRD
Sbjct: 53 RVDYIHQALISINDTLHKYQSTLQVYHGKPLEIFELITTQYQVQAVYCNRDYEPQAIKRD 112
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
VKK +N I +F ++D V++ +G L Y +Y
Sbjct: 113 HAVKKKLQKNGIQFYDFKDQVIFDQSEVVKADG----LAYTVY 151
>gi|320104815|ref|YP_004180406.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
gi|319752097|gb|ADV63857.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
Length = 559
Score = 40.0 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL-CFEQDCEALWHKRDKKVKK 76
+ LA+L R+++ G ++ + G + F+ ++ FT + E+ A +RD+ V+
Sbjct: 72 QALAELRRRVRRAGAEILVGWGEAVESFEAIRAVFPFTHIYAHEEIGGAFTFQRDRAVRA 131
Query: 77 WCAENNITVKE 87
WC +TV E
Sbjct: 132 WCRRRGVTVIE 142
>gi|298675064|ref|YP_003726814.1| deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum
Z-7303]
gi|298288052|gb|ADI74018.1| Deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum
Z-7303]
Length = 459
Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 10/177 (5%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
N F+FL+E L DL QL G +L++ G ++ L + + +D KR
Sbjct: 53 NSFQFLIESLEDLKHQLNDKGAKLYLFHGIAENVVTNLINKNLIDAVFVNRDYTPFSKKR 112
Query: 71 DKKVKKWCAENNITVKEFVS--HTLWDPEVVIQTNGNVPPLTYKMYLHTVS----CIGTM 124
D+ KK C N+ +F+S L + I+T P + + S + M
Sbjct: 113 DEAFKKACEMYNV---DFISCNDLLLNNPDKIKTQKGTPYTVFTPFFKKASKFDVNLPEM 169
Query: 125 HIGYNRFRFLLEC-LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
N + +E L D D LK+ + V+G + + L+ F E+D
Sbjct: 170 SSKQNFYTGKIENELNDTDHFLKAKRNKPLYVKGGRSNALKILENLDEFKNYENERD 226
>gi|254875807|ref|ZP_05248517.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254841828|gb|EET20242.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 499
Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ + ++ FL ECL +L+ +L G L ++ G + +F++L ++ + Q+ W
Sbjct: 43 MSHRQYLFLSECLEELNTELTRLGQPLILMIGDAVEVFEQLIQQYPINSVWSHQETWNNW 102
Query: 68 -HKRDKKVKKWCAENNIT 84
++RD K++K+ +NNI
Sbjct: 103 TYQRDIKLEKFFKQNNIV 120
>gi|330448317|ref|ZP_08311965.1| DNA photolyase family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492508|dbj|GAA06462.1| DNA photolyase family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 491
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60
M H +RF+ + L D++ QL Q+FI G+ + KL L
Sbjct: 40 MLLSDPHYSERHWRFIWQSLQDINHQLAGVNSQVFIFHGNAVECLDKLMHHFPINALFSH 99
Query: 61 QDCE-ALWHKRDKKVKKWCAENNITVKEF 88
Q+ +RD +K WC + I EF
Sbjct: 100 QEIGLGCTFERDLNIKAWCDKQQIQWHEF 128
>gi|255574119|ref|XP_002527975.1| DNA photolyase, putative [Ricinus communis]
gi|223532601|gb|EEF34387.1| DNA photolyase, putative [Ricinus communis]
Length = 576
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 25/57 (43%)
Query: 115 LHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 171
HT G R +FL+ECLADL L G LFI G P I L R +
Sbjct: 122 FHTTHHFAFPKTGALRAQFLIECLADLKNNLMKRGLNLFIRHGKPEDILPSLARAFS 178
Score = 39.3 bits (90), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 53
FP T G R +FL+ECLADL L G LFI G P I L R +
Sbjct: 130 FPKT---GALRAQFLIECLADLKNNLMKRGLNLFIRHGKPEDILPSLARAFS 178
>gi|374329028|ref|YP_005079212.1| FAD binding domain of DNA photolyase [Pseudovibrio sp. FO-BEG1]
gi|359341816|gb|AEV35190.1| FAD binding domain of DNA photolyase [Pseudovibrio sp. FO-BEG1]
Length = 471
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G +G +L L L+ LK GQL I++G P I L +E + F C
Sbjct: 43 GARKLGGATKNWLHYSLKALNESLK---GQLLIMRGDPAVIINSLIQETGAAGV-FWNRC 98
Query: 64 EALWH-KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
W + D ++K EN I K F LW+P V + +G+
Sbjct: 99 YEPWRVEHDAQLKTDLEENGIAAKSFNGSLLWEPWQVGKRDGS 141
>gi|118496971|ref|YP_898021.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
gi|194324200|ref|ZP_03057974.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTE]
gi|118422877|gb|ABK89267.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
gi|194321647|gb|EDX19131.1| deoxyribodipyrimidine photolyase family protein [Francisella
tularensis subsp. novicida FTE]
Length = 499
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ + ++ FL ECL +L+ +L G L ++ G + +F++L ++ + Q+ W
Sbjct: 43 MSHRQYLFLSECLEELNTELTRLGQPLILMIGDAVEVFEQLIQQYPINSVWSHQETWNNW 102
Query: 68 -HKRDKKVKKWCAENNIT 84
++RD K++K+ +NNI
Sbjct: 103 TYQRDIKLEKFFKQNNIV 120
>gi|449015791|dbj|BAM79193.1| probable photolyase/blue-light receptor [Cyanidioschyzon merolae
strain 10D]
Length = 438
Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R +FL+E +ADL + LK G L I G P + L R+ K+ + Q+
Sbjct: 145 GFEKTGRYRAKFLIESVADLRKALKKKGNNLLIRIGKPEEVIPDLCRKYEIKKVFYHQEV 204
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
+ ++ V + + + V F ++TL+ E
Sbjct: 205 TYEELECEEAVARKLEDMKVEVHPFWTNTLYAVE 238
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
+ G G R +FL+E +ADL + LK G L I G P + L R+ K+ +
Sbjct: 142 TSFGFEKTGRYRAKFLIESVADLRKALKKKGNNLLIRIGKPEEVIPDLCRKYEIKKVFYH 201
Query: 179 QDC 181
Q+
Sbjct: 202 QEV 204
>gi|436838433|ref|YP_007323649.1| cryptochrome, DASH family [Fibrella aestuarina BUZ 2]
gi|384069846|emb|CCH03056.1| cryptochrome, DASH family [Fibrella aestuarina BUZ 2]
Length = 501
Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL-------CFEQ 61
G R FLLE +ADL L++ GG L + G P + L E+ + E
Sbjct: 65 GLLRTNFLLEAVADLRSSLRARGGDLIVRVGDPARVLADLAEEIEADAIYASKEVTSEET 124
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLW 94
D E+ KR K + NI ++ F + TL+
Sbjct: 125 DVESALSKRLKPL-------NIDIEFFWTSTLY 150
>gi|449436487|ref|XP_004136024.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 1 [Cucumis
sativus]
gi|449498510|ref|XP_004160557.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 1 [Cucumis
sativus]
Length = 459
Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R F++E ++DL + L++ G L + G P ++ +L +E+ + +
Sbjct: 171 GPFRAAFVIESVSDLRKNLQARGSNLVVRIGKPETVLAELAKEIGADAVYAHYEVSHDEM 230
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLW 94
+ +++++ E N+ VK F TL+
Sbjct: 231 ETEERIESAMKEENVEVKYFWGSTLY 256
>gi|449436489|ref|XP_004136025.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 2 [Cucumis
sativus]
gi|449498514|ref|XP_004160558.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 2 [Cucumis
sativus]
Length = 451
Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R F++E ++DL + L++ G L + G P ++ +L +E+ + +
Sbjct: 171 GPFRAAFVIESVSDLRKNLQARGSNLVVRIGKPETVLAELAKEIGADAVYAHYEVSHDEM 230
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLW 94
+ +++++ E N+ VK F TL+
Sbjct: 231 ETEERIESAMKEENVEVKYFWGSTLY 256
>gi|456063902|ref|YP_007502872.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
gi|455441199|gb|AGG34137.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
Length = 505
Score = 39.7 bits (91), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HKR 70
++ F+ E L DL QLK G L + QG I + L +E L + W ++R
Sbjct: 49 QWHFVRESLLDLSDQLKVLGATLVVHQGRVIDFLETLYQERGQFTLHSHIETGIDWTYQR 108
Query: 71 DKKVKKWCAENNITVKEF 88
DKKV +WC + + E+
Sbjct: 109 DKKVAEWCQAHQLDWHEY 126
>gi|225010805|ref|ZP_03701273.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
MS024-3C]
gi|225005013|gb|EEG42967.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
MS024-3C]
Length = 491
Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA-LWHKRDKK 73
F+ E L ++ +LK + ++ I+ I +K+ + L + + + RDK
Sbjct: 51 FIQEGLEEIQLKLKEYDTKILILSDYIPEILKKIHSKEPIKALYSHMEAGMDITYTRDKA 110
Query: 74 VKKWCAENNITVKEFVSHTLW 94
VKKWC +N+I EF + LW
Sbjct: 111 VKKWCTQNSIHWHEFAQNGLW 131
>gi|386713001|ref|YP_006179324.1| deoxyribodipyrimidine photo-lyase [Halobacillus halophilus DSM
2266]
gi|384072557|emb|CCG44047.1| deoxyribodipyrimidine photo-lyase [Halobacillus halophilus DSM
2266]
Length = 499
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN-FTKLCFEQDCEALWHKRD 71
F F+ E L DL + + GG LF G + + + R F E++ ++RD
Sbjct: 50 FHFVKESLMDLQKSFRQKGGNLFTAIGEIEEVLEGINRTFGEFILHAHEENGTPHTYERD 109
Query: 72 KKVKKWCAENNITVKEF 88
+V KW E + +E+
Sbjct: 110 LRVHKWMKERGLDFREY 126
>gi|332293614|ref|YP_004432223.1| deoxyribodipyrimidine photo-lyase [Krokinobacter sp. 4H-3-7-5]
gi|332171700|gb|AEE20955.1| Deoxyribodipyrimidine photo-lyase [Krokinobacter sp. 4H-3-7-5]
Length = 465
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 12 RFRFLLECLADLDRQLKS-HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
R F+ E L + L+ H L + +P +F++L ++ + +D E +R
Sbjct: 82 RVTFIFETLQKMRSTLQDEHASSLAMYYDTPEKVFKQLSKDFEIATVFTNRDYEPYAKER 141
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTY 111
D+ + +N+I K F +++ + V++ +G+ P + Y
Sbjct: 142 DEVISSLLKDNDIEFKTFKDQVIFEKDEVVKGDGD-PYVVY 181
>gi|72383487|ref|YP_292842.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. NATL2A]
gi|72003337|gb|AAZ59139.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. NATL2A]
Length = 493
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
FL E L +L + + G +L I+ G PI + KL ++ + + ++ E RDK++
Sbjct: 56 FLGESLIELQKNWEIRGSRLLILNGDPIELISKLAELVHAECIYWNENIEPYEINRDKQI 115
Query: 75 KKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+ ++ V F+ + +P I+TN + P YK+Y
Sbjct: 116 AEKLSKEKRKVYTFLDQLIVNPS-NIKTNNDEP---YKVY 151
>gi|300790232|ref|YP_003770523.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei U32]
gi|384153759|ref|YP_005536575.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei S699]
gi|399542111|ref|YP_006554774.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei S699]
gi|299799746|gb|ADJ50121.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei U32]
gi|340531913|gb|AEK47118.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei S699]
gi|398322881|gb|AFO81828.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei S699]
Length = 448
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R FL CL L+ QL GG+L +V+G P + K +++ + D
Sbjct: 48 GAPREAFLYGCLEKLNEQL---GGRLMLVRGEPAAEVVKAAKKIGAAAVHVSADTGPYGR 104
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+RD V K AE+NI E S P V + +G+
Sbjct: 105 RRDASVAKALAEHNIEWVETGSSYAVTPGRVTKPDGS 141
>gi|406707185|ref|YP_006757537.1| FAD-binding protein, DNA photolyase family,DNA photolyase [alpha
proteobacterium HIMB59]
gi|406652961|gb|AFS48360.1| FAD-binding protein, DNA photolyase family,DNA photolyase [alpha
proteobacterium HIMB59]
Length = 481
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH-KR 70
++ F+ E + L L H L I+ G IFQ L ++ +FT++ EQ+ W +R
Sbjct: 48 QWDFIWESVESLKTDLAKHNLHLNILSGDAAEIFQSLHQKYSFTEVISEQETGIHWTFER 107
Query: 71 DKKVKKWCAENNITVKEF 88
DKK+K N+ E+
Sbjct: 108 DKKLKSLFNNLNVNWIEY 125
>gi|434400657|ref|YP_007134661.1| Deoxyribodipyrimidine photo-lyase [Stanieria cyanosphaera PCC 7437]
gi|428271754|gb|AFZ37695.1| Deoxyribodipyrimidine photo-lyase [Stanieria cyanosphaera PCC 7437]
Length = 475
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 41/104 (39%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ R +++ CL L + + G QL I++G P +L L + + D E
Sbjct: 47 VAPARVTYMIGCLQQLQQSYQQAGSQLLIIKGKPTQTIPQLAETLQAKTVFWNWDVEPYA 106
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTY 111
RD+KVK E I V L P ++ + P Y
Sbjct: 107 KARDQKVKAALTEKGIEVSSLWDQLLHAPGEILTKSSQQPYTVY 150
>gi|298490155|ref|YP_003720332.1| deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708]
gi|298232073|gb|ADI63209.1| Deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708]
Length = 479
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R ++++ CL L++Q G QL I+ +PI++ L L + + D E RD
Sbjct: 51 RIKYMMGCLQSLEKQYTQAGSQLVILYDNPIAVIPALAEALKVKAVFWNWDVEPYAQIRD 110
Query: 72 KKV 74
V
Sbjct: 111 NDV 113
Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
R ++++ CL L++Q G QL I+ +PI++ L L + + D E Y
Sbjct: 51 RIKYMMGCLQSLEKQYTQAGSQLVILYDNPIAVIPALAEALKVKAVFWNWDVEPY 105
>gi|428182576|gb|EKX51436.1| induced by DNA damage [Guillardia theta CCMP2712]
Length = 493
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R +FLLE +ADL ++L+ G L ++ G P I +L + T + +++
Sbjct: 55 GPRKTGVLRAKFLLESVADLKKRLQGVGSDLLVLSGKPEVIIPRLMQSGEDTTVLAQEEV 114
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTL 93
+ D+ VK+ A + HTL
Sbjct: 115 TDEELRVDRAVKRAIAPLGGKLHLLWGHTL 144
>gi|380302739|ref|ZP_09852432.1| deoxyribodipyrimidine photolyase [Brachybacterium squillarum M-6-3]
Length = 459
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G +R+ +L L DL QL+ H L + G P + L E + + + A
Sbjct: 45 GASRW-WLHHSLRDLAAQLREHDVPLVLADGDPREVLPALVEETGAGSVSWMRRYHAPRR 103
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+ D +K E I + F H L +P + +GN Y++Y
Sbjct: 104 EIDAAIKADLRERGIEAESFAGHLLHEPWTIATGDGN----PYRVY 145
>gi|305666673|ref|YP_003862960.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170]
gi|88707478|gb|EAQ99722.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170]
Length = 436
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 12 RFRFLLECLADLDRQLKS-HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
R F+ + L+ +K H + I G PI IF L ++ + D E KR
Sbjct: 52 RVNFIYNTIETLNTNIKKKHKSSIAIFHGKPIEIFNTLIKKHTIDAVFANHDYEPHALKR 111
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
D +K+ A N+I+ + +++ +I+++ + P + Y Y
Sbjct: 112 DTAIKELLANNSISFHTYKDQVIFEKNEIIKSDKS-PYVVYTPY 154
>gi|186682403|ref|YP_001865599.1| DNA photolyase [Nostoc punctiforme PCC 73102]
gi|186464855|gb|ACC80656.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
Length = 481
Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 10/108 (9%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R +++ CL L + G QL I+ P+ L +N + + D E +RD
Sbjct: 51 RVTYMIGCLQKLQERYAQVGSQLLILHADPVQAIPALAEAINAKAVFWNWDVEPYSQERD 110
Query: 72 KKVKKWCAENNITVKEFVSHTLWD-----PEVVIQTNGNVPPLTYKMY 114
+ + E I EF++ WD P+ I+T GN P Y +
Sbjct: 111 RTIINALKEKGI---EFLNQN-WDQILNSPD-EIRTGGNSPYTVYTPF 153
>gi|410027954|ref|ZP_11277790.1| DASH family cryptochrome [Marinilabilia sp. AK2]
Length = 474
Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 120 CIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179
+G G +R +FL+E + +L L+S GG L I+QG P + L ++ + + F +
Sbjct: 46 SLGIDKTGNHRAKFLIEAVDNLRSNLQSLGGDLVIIQGKPEEVLVSLAKKHDAEAIFFSE 105
Query: 180 DC 181
+
Sbjct: 106 EV 107
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G +R +FL+E + +L L+S GG L I+QG P + L ++ + + F ++
Sbjct: 48 GIDKTGNHRAKFLIEAVDNLRSNLQSLGGDLVIIQGKPEEVLVSLAKKHDAEAIFFSEEV 107
>gi|408675634|ref|YP_006875382.1| DNA photolyase FAD-binding protein [Emticicia oligotrophica DSM
17448]
gi|387857258|gb|AFK05355.1| DNA photolyase FAD-binding protein [Emticicia oligotrophica DSM
17448]
Length = 437
Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ L++L R L + I +G PI I++ + E ++ D E +RD
Sbjct: 54 RVEFIHHALSELQRSLSKLQSSILIKKGEPIEIWKLISEEYEIAEVYTNHDYEKYAIERD 113
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
K+V + I F T+++ V+ +G
Sbjct: 114 KQVGELLNSKGIAFYTFKDQTIFEKNEVLSGSG 146
>gi|310831104|ref|YP_003969747.1| putative CPD class I photolyase [Cafeteria roenbergensis virus
BV-PW1]
gi|309386288|gb|ADO67148.1| putative CPD class I photolyase [Cafeteria roenbergensis virus
BV-PW1]
Length = 474
Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QGSPISIFQKLKRELNFTKLCFEQD 62
++ N F FL+E L DL +Q+ + G+L+ + I I ++ + N K+ +D
Sbjct: 44 YLSDNSFGFLIESLEDLSKQISKNKGKLYYFLTNKNTTEIDIISQIIQYNNILKIYTNKD 103
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNV 106
KRD K+ ++ + NI + +TL P I TN N
Sbjct: 104 WTPYAKKRDDKLLEFGKKENIIINLIEDYTLL-PMGSICTNNNT 146
>gi|315439454|gb|ADU19845.1| cryptochrome 2b [Brassica napus]
gi|327082233|gb|AEA29691.1| cryptochrome 2b [Brassica napus]
Length = 575
Score = 39.3 bits (90), Expect = 0.62, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQL-FIVQGSPISIFQKLKRELNFTKLCFEQD 62
G H G ++ + LA L++ LKS G L FI S +S R TK+ F
Sbjct: 44 GQFHPGRASRWWMKQSLAHLNQSLKSLGSHLTFIKTHSTVSAILDCVRSTGATKVVFNHL 103
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+ + RD VK+ E I+V+ + L++P + NG P T
Sbjct: 104 YDPVSLVRDHNVKEKLVERGISVQGYNGDLLYEPWEINSENGK--PFT 149
>gi|110638357|ref|YP_678566.1| deoxyribodipyrimidine photolyase [Cytophaga hutchinsonii ATCC
33406]
gi|110281038|gb|ABG59224.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme)
[Cytophaga hutchinsonii ATCC 33406]
Length = 433
Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H R F+ + + L +L+ + + +P F++L ++ + D E
Sbjct: 47 HKNDARVEFIHDTIQSLKNELQKIHSDMEVYHATPAEAFEQLVKKYTVKAIYTNTDYEPA 106
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
KRD ++ W A+ I K F +++ ++ T+ P Y Y
Sbjct: 107 AIKRDNEISDWAAQQQIAFKSFKDQVIFEKNEIL-TDTGAPYRVYTPY 153
>gi|407700131|ref|YP_006824918.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Black
Sea 11']
gi|407249278|gb|AFT78463.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Black
Sea 11']
Length = 435
Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G +G +R FLL+ L DL RQL G +L +++G + L + +T + Q C
Sbjct: 60 GLSPMGQHRHTFLLQTLEDLKRQLAGLGHELLVLKGKTVECLANLLQAGQYTHIGVSQHC 119
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVP 107
+ VK++ N++TV E + L+D + + ++P
Sbjct: 120 GYDETAQLNAVKRFS--NSLTVVETPTFGLFDVSTLPFSVEDMP 161
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 121 IGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
G +G +R FLL+ L DL RQL G +L +++G + L + +T + Q
Sbjct: 59 FGLSPMGQHRHTFLLQTLEDLKRQLAGLGHELLVLKGKTVECLANLLQAGQYTHIGVSQH 118
Query: 181 C 181
C
Sbjct: 119 C 119
>gi|427420013|ref|ZP_18910196.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
gi|425762726|gb|EKV03579.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
Length = 482
Score = 39.3 bits (90), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 3 PGTMH---IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59
PG + + R ++L C+A L + ++ G +L I++G+P+ + L + +
Sbjct: 39 PGILEADDVAPARVAYMLGCVAQLQERYQAVGSELLILKGNPVEQIPQTASTLGAMAVYW 98
Query: 60 EQDCEALWHKRDKKVKKWCAENNITVK 86
+D E +RD V E I ++
Sbjct: 99 NRDVEPYSRQRDNAVAAALTEKGIEMR 125
>gi|254489917|ref|ZP_05103112.1| cryptochrome, DASH family [Methylophaga thiooxidans DMS010]
gi|224465002|gb|EEF81256.1| cryptochrome, DASH family [Methylophaga thiooxydans DMS010]
Length = 441
Score = 39.3 bits (90), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 166
Y + + +G R +FLLE L DL L++ G QL +++G P++I +L
Sbjct: 37 YDTFWDKPTGFNAKPLGDKRRQFLLESLNDLQHTLEARGQQLIVMKGDPVAIISEL 92
Score = 38.9 bits (89), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 48
+G R +FLLE L DL L++ G QL +++G P++I +L
Sbjct: 52 LGDKRRQFLLESLNDLQHTLEARGQQLIVMKGDPVAIISEL 92
>gi|229199867|ref|ZP_04326458.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
gi|228583609|gb|EEK41836.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
Length = 476
Score = 39.3 bits (90), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60
++ T IG +L + D+ RQL++ G L I +G+ + L ++L T + +
Sbjct: 35 VYDETFSIGSASKWWLHHTIIDVKRQLEALGSTLIIRKGNILEEILSLIKQLGITAVYWN 94
Query: 61 --QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99
D E L + ++KVK + IT KEF SH L +P ++
Sbjct: 95 ICYDPERL--QFNQKVKMMLEDKGITCKEFNSHLLLEPWII 133
>gi|237654597|ref|YP_002890911.1| deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T]
gi|237625844|gb|ACR02534.1| Deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T]
Length = 526
Score = 39.3 bits (90), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL-CFEQDCEALWHKRD 71
+ F+LE +L L GG+L ++ G +++ +L F L E+ A + RD
Sbjct: 50 YEFMLESARELHAGLARVGGRLHLLVGEAVAVLDRLHAAAPFDTLHSHEETGNAASYARD 109
Query: 72 KKVKKWCAENNITVKE 87
+ V +WC + E
Sbjct: 110 RAVARWCRARGVRWHE 125
>gi|85818699|gb|EAQ39859.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4)
photolyase subfamily [Dokdonia donghaensis MED134]
Length = 494
Score = 39.3 bits (90), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%)
Query: 113 MYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 172
+Y+ S + H F F+ E L DL +L+++ ++ +VQG I +F+KL++
Sbjct: 38 LYIFEPSLLDDEHYSERHFNFIKESLQDLQSRLENYDTKILVVQGEVIPVFKKLQQHYTI 97
Query: 173 TKL 175
++
Sbjct: 98 KRV 100
Score = 36.2 bits (82), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL 57
H F F+ E L DL +L+++ ++ +VQG I +F+KL++ ++
Sbjct: 50 HYSERHFNFIKESLQDLQSRLENYDTKILVVQGEVIPVFKKLQQHYTIKRV 100
>gi|392963931|ref|ZP_10329352.1| cryptochrome, DASH family [Fibrisoma limi BUZ 3]
gi|387846826|emb|CCH51396.1| cryptochrome, DASH family [Fibrisoma limi BUZ 3]
Length = 482
Score = 39.3 bits (90), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 118 VSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177
V +G G R FLLE +ADL + +++ GG+L I G P +I +L + +
Sbjct: 45 VHNLGFKKTGIYRASFLLESVADLRQSIRAKGGELIIRIGEPANILAELAESADVAAVYA 104
Query: 178 EQDC 181
++
Sbjct: 105 SKEV 108
Score = 38.9 bits (89), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R FLLE +ADL + +++ GG+L I G P +I +L D
Sbjct: 49 GFKKTGIYRASFLLESVADLRQSIRAKGGELIIRIGEPANI---------LAELAESADV 99
Query: 64 EALWHKRDKKVKKWCAENNIT 84
A++ ++ ++ AE+N++
Sbjct: 100 AAVYASKEVTQEETDAESNLS 120
>gi|297824863|ref|XP_002880314.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
gi|297326153|gb|EFH56573.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
Length = 448
Score = 39.3 bits (90), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R +FL+E +++L + L++ G L + G P ++ +L +E+ + ++
Sbjct: 166 GPFRAQFLIESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEV 225
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLW 94
K + K++ E + VK F TL+
Sbjct: 226 KAEGKIESAMKEEGVEVKYFWGSTLY 251
>gi|219847792|ref|YP_002462225.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
gi|219542051|gb|ACL23789.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
Length = 479
Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R +FLL+ L LD +L+S G L + +G P++ L RE + + +D +RD
Sbjct: 49 RTQFLLDSLTALDGELRSLGLHLVLRRGEPLTTLMALLRESGAHGVTWNRDYTPYAVQRD 108
Query: 72 KKVKK 76
+K+
Sbjct: 109 STIKR 113
>gi|386818429|ref|ZP_10105647.1| DNA photolyase FAD-binding [Thiothrix nivea DSM 5205]
gi|386423005|gb|EIJ36840.1| DNA photolyase FAD-binding [Thiothrix nivea DSM 5205]
Length = 476
Score = 39.3 bits (90), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 2 FPGTM-HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60
PG++ +G +L L LD L++ G +L + QGS + + Q L E T + +
Sbjct: 39 LPGSVSRLGAASQVWLHHSLQALDASLQAAGNRLTLRQGSALPVLQALLAETGATHVYWN 98
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
+ + RDK++K+ + + TV F + L +P V++ +G
Sbjct: 99 RVYDPASLARDKQIKE-ILKQSCTVHSFNASLLNEPWEVLKADGT 142
>gi|225011849|ref|ZP_03702287.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
MS024-2A]
gi|225004352|gb|EEG42324.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
MS024-2A]
Length = 490
Score = 39.3 bits (90), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
H F F+ + + +++ QLK ++ ++GS I L + + ++ L
Sbjct: 50 HYSARHFDFIKQSIVEMNNQLKLFNTRVLCLKGSVIEALDTLSEQYSIALYSHQETGIGL 109
Query: 67 WHKRDKKVKKWCAENNITVKEFV 89
+RDK VK+W +N + EF+
Sbjct: 110 TFERDKSVKQWADKNGVHWNEFL 132
>gi|410634949|ref|ZP_11345574.1| deoxyribodipyrimidine photo-lyase [Glaciecola lipolytica E3]
gi|410145523|dbj|GAC12779.1| deoxyribodipyrimidine photo-lyase [Glaciecola lipolytica E3]
Length = 476
Score = 39.3 bits (90), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%)
Query: 33 QLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHT 92
+L +++G+PI + + + T + + + E RDK++K+ + NI V+ F
Sbjct: 69 KLHVMRGNPIDVLNNIIEQTGATHVVWNRCYEPWQIHRDKELKEQLKQRNIQVESFNGSL 128
Query: 93 LWDPEVVIQTNGN 105
LW+P ++ +G+
Sbjct: 129 LWEPWTIMNQSGS 141
>gi|428773120|ref|YP_007164908.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium stanieri PCC 7202]
gi|428687399|gb|AFZ47259.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium stanieri PCC 7202]
Length = 486
Score = 39.3 bits (90), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R + ++E + DL + L+ G L + +G K+ + T++ F +
Sbjct: 49 FPKT---GKYRAKLIIESVTDLQKSLQKIGSNLVVKKGKTEEEISKIVEKYQITEVYFSK 105
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
+ A +KK+ K + + +K F TL+ P+
Sbjct: 106 EATAEERAMEKKLTKILDKKQVKIKTFWQSTLYFPD 141
>gi|397662777|ref|YP_006504315.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
gi|395126188|emb|CCD04368.1| Deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
Length = 471
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G + +L L L + L G L + +GSP I +L + N + + + E
Sbjct: 43 LGQAQAWWLHHSLIALGKSLNQKGLNLVLRKGSPQEIIVELVAQHNVESVYWNRSYEPQV 102
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
RDKK+K E I V+ F + L +P + NG+
Sbjct: 103 IARDKKIKLALGEREIKVQSFNGNLLHEPWTIKNKNGD 140
>gi|116072905|ref|ZP_01470170.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
gi|116064431|gb|EAU70192.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
Length = 496
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HKRDKK 73
F E L DL R L G L + +G + ++ +R+ L ++ W ++RDK+
Sbjct: 53 FCRESLIDLQRALAEFGQPLVVRRGDVADVLERARRQFGIDALWSHEETGNDWTYQRDKR 112
Query: 74 VKKWCAENNITVKEF 88
V W ++ I E
Sbjct: 113 VAAWAKQHGIPWTEI 127
>gi|110637463|ref|YP_677670.1| deoxyribodipyrimidine photo-lyase type I [Cytophaga hutchinsonii
ATCC 33406]
gi|110280144|gb|ABG58330.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cytophaga hutchinsonii ATCC 33406]
Length = 434
Score = 38.9 bits (89), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R +FLLE L DLD L+ G L +V+G P + K+ ++ K+ +++
Sbjct: 47 GFQKTGNFRAQFLLESLNDLDTNLRKLGSGLIVVRGKPETELYKIVKQYEAFKVFAKREV 106
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVP 107
+ + +V+K + T + F + TL+ + + + ++P
Sbjct: 107 AYEEQQTEARVEKEIWKLGCTFESFSTSTLYHAQDLPFSIKDIP 150
>gi|434402615|ref|YP_007145500.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
gi|428256870|gb|AFZ22820.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
Length = 480
Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 31/76 (40%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
I R ++L CL L + G QL I+ G P+ + L L + + D E
Sbjct: 47 IAPARVTYMLGCLQALQERYIQAGSQLLILHGPPVVVIADLAEALKAKAVFWNWDVEPYS 106
Query: 68 HKRDKKVKKWCAENNI 83
KRD+ + E I
Sbjct: 107 QKRDRTIINSLTEKGI 122
>gi|410029665|ref|ZP_11279495.1| deoxyribodipyrimidine photolyase [Marinilabilia sp. AK2]
Length = 433
Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 44/94 (46%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + L QLK G + + G P+ I+++L + + +D E RD
Sbjct: 52 RVTFIHTQIEKLQNQLKDFGSSMLVKYGEPMEIWKELLNSYSIDNVYTNRDYEPYAISRD 111
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
K+VK+ + + + +F +++ V+ +G+
Sbjct: 112 KRVKELLSGHGVQFLDFKDQVIFEKSEVVNGSGD 145
>gi|384181025|ref|YP_005566787.1| deoxyribodipyrimidine photolyase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|324327109|gb|ADY22369.1| deoxyribodipyrimidine photolyase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 476
Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE--QD 62
T IG +L + D+ RQL++ G L I +G+ + L ++L T + + D
Sbjct: 39 TFSIGSASKWWLHHAIIDVQRQLEAVGSTLIIRKGNILEEILSLIKQLGITAVYWNICYD 98
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99
E L + ++K+K + IT KEF SH L +P V+
Sbjct: 99 PERL--QFNQKMKMMLEDKGITCKEFNSHLLLEPWVI 133
>gi|187927713|ref|YP_001898200.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
gi|187724603|gb|ACD25768.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
Length = 518
Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 40/93 (43%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + +L L+ GG L +V P ++ R+LN + D E RD
Sbjct: 70 RIEFIRASIEELRSALREAGGDLMVVHDHPRHAIPEIARKLNIEAVFANHDEEPSAQARD 129
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+ V+K A+ +F +++ + ++ G
Sbjct: 130 EAVRKVLAQQPCAWFDFKDQVIFERDEILNGQG 162
>gi|427723364|ref|YP_007070641.1| deoxyribodipyrimidine photo-lyase type I [Leptolyngbya sp. PCC
7376]
gi|427355084|gb|AFY37807.1| deoxyribodipyrimidine photo-lyase type I [Leptolyngbya sp. PCC
7376]
Length = 475
Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R ++LL CL +L G +L I+ G P+ + ++ L T + + D E KRD
Sbjct: 51 RVKYLLACLEELSESYCQVGSELLILNGKPVELLPRVTAILKATAVYWNLDVEPYAQKRD 110
Query: 72 KKVKKWCAENNITVKEFVSHTLWD----PEVVIQTNGNVPPLTYKMY 114
+ + V+ T+WD P I T P YK+Y
Sbjct: 111 HDMAIALRQAGAKVE-----TVWDQLLHPPGKILTKSKSP---YKVY 149
>gi|404450368|ref|ZP_11015352.1| DASH family cryptochrome [Indibacter alkaliphilus LW1]
gi|403764104|gb|EJZ25020.1| DASH family cryptochrome [Indibacter alkaliphilus LW1]
Length = 473
Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R FLL + +L ++L G LFI+QG P +L ELN + F ++
Sbjct: 47 GFAKTGSFRADFLLSAVDNLRKRLNEIGSDLFILQGKPEEEVSRLALELNVDAVFFSEEV 106
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTL 93
+ ++ ++K + I + F TL
Sbjct: 107 TSEEKYVEEALEKKLWKEGIKTESFWQSTL 136
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 121 IGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
+G G R FLL + +L ++L G LFI+QG P +L ELN + F ++
Sbjct: 46 LGFAKTGSFRADFLLSAVDNLRKRLNEIGSDLFILQGKPEEEVSRLALELNVDAVFFSEE 105
Query: 181 CEA 183
+
Sbjct: 106 VTS 108
>gi|15226633|ref|NP_182281.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana]
gi|116248577|sp|Q8LB72.2|PHR2_ARATH RecName: Full=Blue-light photoreceptor PHR2
gi|2529668|gb|AAC62851.1| photolyase/blue-light receptor (PHR2) [Arabidopsis thaliana]
gi|3319288|gb|AAC26199.1| photolyase/blue light photoreceptor PHR2 [Arabidopsis thaliana]
gi|115646759|gb|ABJ17108.1| At2g47590 [Arabidopsis thaliana]
gi|330255768|gb|AEC10862.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana]
Length = 447
Score = 38.9 bits (89), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R +FL+E +++L + L++ G L + G P ++ +L +E+ + ++
Sbjct: 165 GPFRAQFLIESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEV 224
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLW 94
K + K++ E + VK F TL+
Sbjct: 225 KAEGKIETAMKEEGVEVKYFWGSTLY 250
>gi|389772571|ref|ZP_10192146.1| deoxyribodipyrimidine photo lyase [Rhodanobacter sp. 115]
gi|388429582|gb|EIL86900.1| deoxyribodipyrimidine photo lyase [Rhodanobacter sp. 115]
Length = 471
Score = 38.9 bits (89), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G IG +L LA LDR+L++H L + QG + + ++L R + + +
Sbjct: 42 GPWSIGSASRWWLHHSLAALDRRLRAHHVALHLRQGDTLEVLRELVRRSGADAVYWNRLY 101
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
E +RD ++K E V TLW I T + P YK++
Sbjct: 102 EPALIERDTRIKSALREQGTAVHSHPG-TLWCEPWQIATQQDAP---YKVF 148
>gi|254445301|ref|ZP_05058777.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
gi|198259609|gb|EDY83917.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
Length = 522
Score = 38.9 bits (89), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN-FTKLCFEQDCEALWHKRDKK 73
F+ + L DLD L+ G L + +G+ +FQ L + + F E+ AL +RD+
Sbjct: 55 FINDSLRDLDTSLRKLGTALVVHEGTATEVFQSLLKSIGPFRLFSHEETGNALTFRRDRD 114
Query: 74 VKKWCAENNITVKEF 88
V W I E+
Sbjct: 115 VAAWTKTQRIQWIEY 129
>gi|123965553|ref|YP_001010634.1| DNA photolyase [Prochlorococcus marinus str. MIT 9515]
gi|123199919|gb|ABM71527.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9515]
Length = 478
Score = 38.9 bits (89), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FL L +L R ++ G ++ I +G+P+++ KL + ++ + + + E RD
Sbjct: 51 RAWFLGNSLQELSRNWETLGSRMIIDEGNPLTLIPKLAQLIDAKFVAWNKAIEPYEINRD 110
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTY 111
++K + I + E H L +P I T N P Y
Sbjct: 111 LEIKNTLKKFKIEIIELWDHLLLEPS-QIHTGSNKPYTVY 149
>gi|21592984|gb|AAM64933.1| photolyase/blue-light receptor PHR2 [Arabidopsis thaliana]
Length = 447
Score = 38.9 bits (89), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R +FL+E +++L + L++ G L + G P ++ +L +E+ + ++
Sbjct: 165 GPFRAQFLIESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEV 224
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLW 94
K + K++ E + VK F TL+
Sbjct: 225 KAEGKIETAMKEEGVEVKYFWGSTLY 250
>gi|146276865|ref|YP_001167024.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC
17025]
gi|145555106|gb|ABP69719.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
ATCC 17025]
Length = 470
Score = 38.9 bits (89), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%)
Query: 27 LKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86
L+ G +L + +G + + +L E + + + CE W RD+ VK I +
Sbjct: 64 LERLGSRLILRRGPALEVLGRLAAETGALGVRWSRLCEPGWRSRDEGVKAGLKRQGIAAE 123
Query: 87 EFVSHTLWDPEVVIQTNGN 105
HTL++P V G
Sbjct: 124 SHAGHTLFEPWEVRTGQGG 142
>gi|261855905|ref|YP_003263188.1| deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
c2]
gi|261836374|gb|ACX96141.1| Deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
c2]
Length = 507
Score = 38.9 bits (89), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH-K 69
+FRFL CL +L + I G + + L ++ T L Q+ W
Sbjct: 46 RQFRFLTACLDELKTVAQDRSIHFVIKVGEAVEVLTSLHQKYAITALWSHQETGNGWTFA 105
Query: 70 RDKKVKKWCAENNITVKEFVSH 91
RD++V +WC ++I E H
Sbjct: 106 RDQRVSRWCQYHHIPWHEPAQH 127
>gi|269965811|ref|ZP_06179906.1| hypothetical protein VMC_13360 [Vibrio alginolyticus 40B]
gi|269829546|gb|EEZ83785.1| hypothetical protein VMC_13360 [Vibrio alginolyticus 40B]
Length = 117
Score = 38.9 bits (89), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD---- 62
H +RF+ + L D+D LK++G ++ ++ ++ FQ ++ + + Q+
Sbjct: 5 HYSERHWRFVWQSLQDMDETLKAYGHRITVLFDDALACFQSIQAQYQINAVFSHQEIGLN 64
Query: 63 CEALWHKRDKKVKKWCAENNITVKEF 88
C +RD++V W E NI EF
Sbjct: 65 CT---FERDRQVAAWLYEQNIDWFEF 87
>gi|284041014|ref|YP_003390944.1| DASH family cryptochrome [Spirosoma linguale DSM 74]
gi|283820307|gb|ADB42145.1| cryptochrome, DASH family [Spirosoma linguale DSM 74]
Length = 487
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FLLE +ADL + L+S G L + G P + +L E+ T + ++ ++
Sbjct: 56 RANFLLESVADLRQSLRSRGADLIVRVGKPADVLAELAGEIGATAVYASKEVTHEETTQE 115
Query: 72 KKVKKWCAENNITVKEFVSHTLW 94
K+ NI ++ F TL+
Sbjct: 116 TKLSTKLKPLNIDIELFWMSTLY 138
>gi|225011846|ref|ZP_03702284.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
MS024-2A]
gi|225004349|gb|EEG42321.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
MS024-2A]
Length = 434
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R +L L +D +K + + G+P +IF KL ++ N K+ +D E +RD
Sbjct: 51 RVEMILLALGAIDIAMKRNRCNVGKYHGTPKAIFSKLIKQWNIEKVICNEDYEPYASERD 110
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
++K I + + +++ E V++ +G YK+Y
Sbjct: 111 SEIKTLLEAAGIQFECYKDQVIFEKEEVVKGDGT----PYKVY 149
>gi|90577812|ref|ZP_01233623.1| deoxyribodipyrimidine photolyase, putative [Photobacterium angustum
S14]
gi|90440898|gb|EAS66078.1| deoxyribodipyrimidine photolyase, putative [Photobacterium angustum
S14]
Length = 491
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60
M H +RF+ + L D++ QL Q+FI G+ + KL L
Sbjct: 40 MLLSDPHYSERHWRFIWQSLEDMNHQLACVNSQVFIFHGNAVECLDKLMHHCPINALFSH 99
Query: 61 QDCE-ALWHKRDKKVKKWCAENNITVKEF 88
Q+ +RD +K WC + I EF
Sbjct: 100 QEIGLGCTFERDLNIKAWCDKQQIQWHEF 128
>gi|123965634|ref|YP_001010715.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
9515]
gi|123200000|gb|ABM71608.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
str. MIT 9515]
Length = 503
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC-EALWHKR 70
+++F E L DL L + G L I G I IF ++ + Q+ + L +KR
Sbjct: 50 QWQFCKESLLDLRISLANIGQPLIIRTGKVIEIFDQISNNFEIKAIYSHQETGDYLTYKR 109
Query: 71 DKKVKKWCAENNITVKEFVSHTL 93
D++V+KW + I KE++ ++
Sbjct: 110 DQEVRKWASMKKIIWKEYLQFSV 132
>gi|428217984|ref|YP_007102449.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena sp. PCC 7367]
gi|427989766|gb|AFY70021.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena sp. PCC 7367]
Length = 500
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL--NFTKLCFEQ 61
G G R +FL E + DL +L+ G L + G P I +L ++L N + + Q
Sbjct: 49 GFAKTGAFRAQFLTESVLDLRDRLRQLGSDLIVRYGEPEQILPELAQKLNANANAIYYHQ 108
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLW 94
+ + K + + + A +I ++ F HTL+
Sbjct: 109 EVTSEETKVEAAIAQDLAATDIKLQAFWGHTLY 141
>gi|218245570|ref|YP_002370941.1| DASH family cryptochrome [Cyanothece sp. PCC 8801]
gi|218166048|gb|ACK64785.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801]
Length = 488
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G + +FLL+ + +L + L+ G L + +G P I ++ +EL + F Q
Sbjct: 52 FPKT---GNFKSQFLLQSIDNLRKNLQQLGSNLVVRRGYPEKIIPEICKELAIDAVYFHQ 108
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ + K + ++K + + + F TL+ P+ + T +P L
Sbjct: 109 EVTSEEIKVETALEKALTQMGVQLNPFWGTTLYHPDDLPFTLAEIPEL 156
>gi|206974530|ref|ZP_03235446.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
H3081.97]
gi|206747173|gb|EDZ58564.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
H3081.97]
Length = 476
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT----K 56
++ T IG +L + D+ RQL++ G L I +G+ + L +L T
Sbjct: 35 VYDETFSIGSASKWWLHHTIIDVKRQLEALGSTLIIRKGNTMEEILSLIEQLGITAVYWN 94
Query: 57 LCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99
+C++ D + ++K+K + IT KEF SH L +P ++
Sbjct: 95 ICYDPDR----LQSNQKMKMMLEDKGITCKEFNSHLLLEPWII 133
>gi|407958302|dbj|BAM51542.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
Length = 482
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 37/94 (39%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R +LL CL L + G +L + Q P+ + KL L + + D E KRD
Sbjct: 59 RVAYLLGCLQSLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRD 118
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
V + E + + + P V+ G+
Sbjct: 119 LAVAQALRERGLAIATEWDQLMHHPGEVLTQAGS 152
>gi|118594490|ref|ZP_01551837.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium
HTCC2181]
gi|118440268|gb|EAV46895.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium
HTCC2181]
Length = 465
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ E L+++ L S + ++ G PI L ++ + L F +D E+ +KRD
Sbjct: 46 RIEFIWEALSEMKASLNSLSSDITVIHGDPIHAIPLLLKKYDCEALFFNKDYESYANKRD 105
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
++ + +++ +F L++ E I + + P + Y
Sbjct: 106 MRIMEHIQQSSADAYQFKDTVLFE-EKEILSQADKPYTVFSPY 147
>gi|16330382|ref|NP_441110.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|451814540|ref|YP_007450992.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|2499552|sp|Q55081.1|PHR_SYNY3 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|1652872|dbj|BAA17790.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|1771978|gb|AAB81109.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|451780509|gb|AGF51478.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
Length = 488
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 37/94 (39%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R +LL CL L + G +L + Q P+ + KL L + + D E KRD
Sbjct: 65 RVAYLLGCLQSLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRD 124
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
V + E + + + P V+ G+
Sbjct: 125 LAVAQALRERGLAIATEWDQLMHHPGEVLTQAGS 158
>gi|228915743|ref|ZP_04079325.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843918|gb|EEM88985.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 476
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60
++ T IG +L + D+ RQL++ G L I +G+ + L ++L T + +
Sbjct: 35 VYDETFSIGSASKWWLHHTIIDVKRQLETLGSTLIIRKGNTLEEILSLIKQLGITAVYWN 94
Query: 61 --QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99
D E L + ++K+K + IT KEF SH L +P ++
Sbjct: 95 ICYDPERL--QFNQKMKMMLEDKGITCKEFNSHLLLEPWII 133
>gi|118484811|gb|ABK94273.1| unknown [Populus trichocarpa]
Length = 457
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 43/87 (49%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
G R FL+E ++DL + L++ G L + G P ++ +L + + + ++
Sbjct: 173 TGPYRANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHREVSHDE 232
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLW 94
K ++K+++ + + VK F TL+
Sbjct: 233 VKAEEKIEELMKDEGVEVKYFWGSTLY 259
>gi|222096635|ref|YP_002530692.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
gi|221240693|gb|ACM13403.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
Length = 476
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE--QD 62
T IG +L + D+ RQL++ G L I +G+ + L ++L T + + D
Sbjct: 39 TFSIGSASKWWLHHTIIDVKRQLEALGSTLIIRKGNTLEEILSLIKQLGITAVYWNICYD 98
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99
E L + ++K+K + IT KEF SH L +P ++
Sbjct: 99 PERL--QFNQKMKMMLEDKGITCKEFNSHLLLEPWII 133
>gi|217960578|ref|YP_002339142.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH187]
gi|229139780|ref|ZP_04268347.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
gi|423352873|ref|ZP_17330500.1| hypothetical protein IAU_00949 [Bacillus cereus IS075]
gi|423373016|ref|ZP_17350356.1| hypothetical protein IC5_02072 [Bacillus cereus AND1407]
gi|423567933|ref|ZP_17544180.1| hypothetical protein II7_01156 [Bacillus cereus MSX-A12]
gi|217063006|gb|ACJ77256.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH187]
gi|228643660|gb|EEK99924.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
gi|401090879|gb|EJP99030.1| hypothetical protein IAU_00949 [Bacillus cereus IS075]
gi|401097348|gb|EJQ05371.1| hypothetical protein IC5_02072 [Bacillus cereus AND1407]
gi|401211272|gb|EJR18020.1| hypothetical protein II7_01156 [Bacillus cereus MSX-A12]
Length = 476
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT----K 56
++ T IG +L + D+ RQL++ G L I +G+ + L +L T
Sbjct: 35 VYDETFSIGSASKWWLHHTIIDVKRQLEALGSTLIIRKGNTMEEILSLIEQLGITAVYWN 94
Query: 57 LCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99
+C++ D + ++K+K + IT KEF SH L +P ++
Sbjct: 95 ICYDPDR----LQSNQKMKMMLEDKGITCKEFNSHLLLEPWII 133
>gi|312796611|ref|YP_004029533.1| Deoxyribodipyrimidine photolyase [Burkholderia rhizoxinica HKI 454]
gi|312168386|emb|CBW75389.1| Deoxyribodipyrimidine photolyase (EC 4.1.99.3) [Burkholderia
rhizoxinica HKI 454]
Length = 522
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
+L E L L+ L + GG+L ++ GS + + K+C+ + A + D +
Sbjct: 72 WLHESLRALNAALVALGGELTVLHGSESQAIEAFAVAIGAIKVCWNRRYSAPQRETDTAI 131
Query: 75 KKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
K E I V F H L +P V +G
Sbjct: 132 KTALKERGIAVFTFNGHLLREPWAVATRDG 161
>gi|448411719|ref|ZP_21576075.1| deoxyribodipyrimidine photolyase [Halosimplex carlsbadense 2-9-1]
gi|445669653|gb|ELZ22261.1| deoxyribodipyrimidine photolyase [Halosimplex carlsbadense 2-9-1]
Length = 522
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 48
R RFL ECL DLDRQ + G L + G P + L
Sbjct: 51 RLRFLHECLDDLDRQYRDRGSSLALRTGDPREVLWSL 87
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 166
R RFL ECL DLDRQ + G L + G P + L
Sbjct: 51 RLRFLHECLDDLDRQYRDRGSSLALRTGDPREVLWSL 87
>gi|224068346|ref|XP_002302716.1| predicted protein [Populus trichocarpa]
gi|222844442|gb|EEE81989.1| predicted protein [Populus trichocarpa]
Length = 471
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 43/87 (49%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
G R FL+E ++DL + L++ G L + G P ++ +L + + + ++
Sbjct: 173 TGPYRANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHREVSHDE 232
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLW 94
K ++K+++ + + VK F TL+
Sbjct: 233 VKAEEKIEELMKDEGVEVKYFWGSTLY 259
>gi|383322123|ref|YP_005382976.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325292|ref|YP_005386145.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491176|ref|YP_005408852.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436443|ref|YP_005651167.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|339273475|dbj|BAK49962.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|359271442|dbj|BAL28961.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274612|dbj|BAL32130.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277782|dbj|BAL35299.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-P]
Length = 479
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 37/94 (39%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R +LL CL L + G +L + Q P+ + KL L + + D E KRD
Sbjct: 56 RVAYLLGCLQSLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRD 115
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
V + E + + + P V+ G+
Sbjct: 116 LAVAQALRERGLAIATEWDQLMHHPGEVLTQAGS 149
>gi|375285088|ref|YP_005105527.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
NC7401]
gi|358353615|dbj|BAL18787.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
NC7401]
Length = 469
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT----K 56
++ T IG +L + D+ RQL++ G L I +G+ + L +L T
Sbjct: 28 VYDETFSIGSASKWWLHHTIIDVKRQLEALGSTLIIRKGNTMEEILSLIEQLGITAVYWN 87
Query: 57 LCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99
+C++ D + ++K+K + IT KEF SH L +P ++
Sbjct: 88 ICYDPDR----LQSNQKMKMMLEDKGITCKEFNSHLLLEPWII 126
>gi|241662182|ref|YP_002980542.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D]
gi|240864209|gb|ACS61870.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D]
Length = 518
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 40/93 (43%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + +L L+ GG L +V P ++ R+LN + D E RD
Sbjct: 70 RVEFIRASIEELRGALREAGGDLIVVHDHPRHAIPEIARQLNVEAVFANHDEEPSAQARD 129
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+ V+K A+ +F +++ + ++ G
Sbjct: 130 EAVRKALAQQPCAWFDFKDQVIFERDEILNGQG 162
>gi|449492091|ref|XP_004176864.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Taeniopygia
guttata]
Length = 488
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKLCFEQDCEALW 67
G +R RFLLE + DL LK G L + +G P + L +L + T + F ++
Sbjct: 57 GPHRLRFLLESVKDLRETLKKKGSTLVVRKGKPEDVVCDLITQLGSVTAVVFHEEATQEE 116
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLW 94
+K + + C ++ + ++ F TL+
Sbjct: 117 LDVEKGLCQVCRQHGVKIQTFWGSTLY 143
>gi|196231423|ref|ZP_03130282.1| Deoxyribodipyrimidine photo-lyase [Chthoniobacter flavus Ellin428]
gi|196224759|gb|EDY19270.1| Deoxyribodipyrimidine photo-lyase [Chthoniobacter flavus Ellin428]
Length = 468
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R FL CL L R L++ GG+L I QG ++ +KL ++ + F +D +
Sbjct: 47 GAPRQAFLCGCLDSLARNLEAKGGRLIIRQGRADAVLKKLVQQTEAEAIYFNRDPDPFGR 106
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVP 107
++++ K + I + + L + V+ T G P
Sbjct: 107 AMEERLTKIARDLGIRLHPYKDIALHERNEVL-TGGGSP 144
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
G R FL CL L R L++ GG+L I QG ++ +KL ++ + F +D + +
Sbjct: 47 GAPRQAFLCGCLDSLARNLEAKGGRLIIRQGRADAVLKKLVQQTEAEAIYFNRDPDPF 104
>gi|226315066|ref|YP_002774962.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
gi|226098016|dbj|BAH46458.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
Length = 484
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G R +A LD L GG+L I +G P + +L +E KL F +D
Sbjct: 45 VGDKRLHAHFSAIAALDDALVQLGGRLLIRRGEPQQVLCQLAQETGAEKLFFNRDYTPDA 104
Query: 68 HKRDKKVKKWCAENNITV---KEFVSH 91
KRD+ V + + + + V K+ V H
Sbjct: 105 RKRDELVSEVLSRHGVFVHACKDLVLH 131
>gi|449437082|ref|XP_004136321.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 549
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 53
FP T G R +F++ECLADL R L G L I G P I L + L
Sbjct: 97 FPKT---GALRAQFIVECLADLKRNLTKRGLNLLIQHGKPEEILPSLAKALG 145
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 171
G G R +F++ECLADL R L G L I G P I L + L
Sbjct: 96 GFPKTGALRAQFIVECLADLKRNLTKRGLNLLIQHGKPEEILPSLAKALG 145
>gi|295113008|emb|CBL31645.1| Deoxyribodipyrimidine photolyase [Enterococcus sp. 7L76]
Length = 256
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKLCFEQDCEALWHKRDKKVKKW 77
LA L ++ L I+ G P+ +F +LKR+L ++ + F +D KRD++ ++
Sbjct: 55 SLASLKERI-DQEAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRF 113
Query: 78 CAENNITVKEFVSHTLWDPEVVIQTNGN 105
ENNI F L E + + +G+
Sbjct: 114 FEENNIQSFSFQDAYLHGSEEIKKNDGS 141
>gi|315499875|ref|YP_004088678.1| DNA photolyase fad-binding protein [Asticcacaulis excentricus CB
48]
gi|315417887|gb|ADU14527.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB
48]
Length = 484
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
+L L LD+ L++ G +L +++GS ++ ++L +++ T+L + E D ++
Sbjct: 53 WLDRSLRSLDQSLRARGARLIVLKGSALAQLKRLIGQVSATRLIASRTFEPKIDAFDAQL 112
Query: 75 KKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
K I V+ F +H L DP + +GN YK++
Sbjct: 113 SKAL---GIPVEIFNTHLLSDPTQIRTGDGN----PYKVF 145
>gi|225429814|ref|XP_002280771.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Vitis vinifera]
Length = 549
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%)
Query: 117 TVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
T G G R +FL+ECLADL R L + G L I G P I L +
Sbjct: 92 TTHYFGFPKTGALRAQFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAK 143
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 50
FP T G R +FL+ECLADL R L + G L I G P I L +
Sbjct: 98 FPKT---GALRAQFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAK 143
>gi|409405685|ref|ZP_11254147.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. GW103]
gi|386434234|gb|EIJ47059.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. GW103]
Length = 497
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FLL +A+LD+ L+ GG L ++ G S L EL + D E +RD
Sbjct: 57 RVDFLLASVAELDQALQKAGGGLIVLNGPAASCITNLAAELQVQAVFTNSDYEPAAVERD 116
Query: 72 KKVKK 76
V +
Sbjct: 117 AAVAQ 121
>gi|296081780|emb|CBI20785.3| unnamed protein product [Vitis vinifera]
Length = 586
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%)
Query: 117 TVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
T G G R +FL+ECLADL R L + G L I G P I L +
Sbjct: 129 TTHYFGFPKTGALRAQFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAK 180
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 50
FP T G R +FL+ECLADL R L + G L I G P I L +
Sbjct: 135 FPKT---GALRAQFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAK 180
>gi|356507809|ref|XP_003522656.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Glycine max]
Length = 549
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 1 MFPGTMHIGYN-----RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 52
+F T H G+ R +FLLECLADL + L G L + G P I L +
Sbjct: 93 LFATTYHFGFPKTGALRAQFLLECLADLRKNLMKRGLNLLVQHGKPEEILPSLAKSF 149
Score = 36.2 bits (82), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 123 TMHIGYN-----RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
T H G+ R +FLLECLADL + L G L + G P I L +
Sbjct: 97 TYHFGFPKTGALRAQFLLECLADLRKNLMKRGLNLLVQHGKPEEILPSLAKSF 149
>gi|386845211|ref|YP_006263224.1| deoxyribodipyrimidine photo-lyase [Actinoplanes sp. SE50/110]
gi|359832715|gb|AEV81156.1| deoxyribodipyrimidine photo-lyase [Actinoplanes sp. SE50/110]
Length = 436
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P + NR RFL + LADL L+ G L I +G P++ + E++ + + D
Sbjct: 34 PRLSGLSANRSRFLHQSLADLRNSLRERGADLVIREGDPVAETIAVASEVDASTITVAAD 93
Query: 63 C 63
Sbjct: 94 V 94
>gi|309780777|ref|ZP_07675518.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Ralstonia sp.
5_7_47FAA]
gi|404394317|ref|ZP_10986121.1| hypothetical protein HMPREF0989_03412 [Ralstonia sp. 5_2_56FAA]
gi|308920459|gb|EFP66115.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Ralstonia sp.
5_7_47FAA]
gi|348613327|gb|EGY62917.1| hypothetical protein HMPREF0989_03412 [Ralstonia sp. 5_2_56FAA]
Length = 518
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 40/93 (43%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + +L L+ GG L +V P ++ R+LN + D E RD
Sbjct: 70 RVEFIRASIEELRGALRETGGDLIVVHDHPRHAIPEIARQLNVEAVFANHDEEPSAQARD 129
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+ V+K A+ +F +++ + ++ G
Sbjct: 130 EAVRKALAQQPCAWFDFKDQVIFERDEILNGQG 162
>gi|407700132|ref|YP_006824919.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Black Sea 11']
gi|407249279|gb|AFT78464.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Black Sea 11']
Length = 474
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH-KRDKK 73
+L LA L+++L H L I +G P + KL + K F C W RDK
Sbjct: 54 WLHHSLASLNKRLNGH---LQIFKGDPRKLIPKLMASFD-AKGIFWNRCYEPWQINRDKG 109
Query: 74 VKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+KK +++ F LW+P V++ +G
Sbjct: 110 IKKTLIDSDYEAHSFNGSLLWEPMKVLKKDG 140
>gi|147866138|emb|CAN79842.1| hypothetical protein VITISV_014519 [Vitis vinifera]
Length = 584
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 50
FP T G R +FL+ECLADL R L + G L I G P I L +
Sbjct: 154 FPKT---GALRAQFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAK 199
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%)
Query: 117 TVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
T G G R +FL+ECLADL R L + G L I G P I L +
Sbjct: 148 TTHYFGFPKTGALRAQFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAK 199
>gi|449505505|ref|XP_004162492.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 549
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 53
FP T G R +F++ECLADL R L G L I G P I L + L
Sbjct: 97 FPKT---GALRAQFIVECLADLKRNLTKRGLNLLIQHGKPEEILPSLAKALG 145
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 171
G G R +F++ECLADL R L G L I G P I L + L
Sbjct: 96 GFPKTGALRAQFIVECLADLKRNLTKRGLNLLIQHGKPEEILPSLAKALG 145
>gi|124025078|ref|YP_001014194.1| DNA photolyase [Prochlorococcus marinus str. NATL1A]
gi|123960146|gb|ABM74929.1| putative DNA photolyase [Prochlorococcus marinus str. NATL1A]
Length = 504
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKV 74
FL E L +L + + G L I+ G PI + KL ++ + + ++ E RDK++
Sbjct: 67 FLGESLLELQKNWEIRGSLLLILNGDPIELISKLAELVHAECIYWNENIEPYEINRDKQI 126
Query: 75 KKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+ ++ V F+ + +P I+TN + P YK+Y
Sbjct: 127 AEKLSKEKRKVYTFLDQLIVNPS-DIKTNNDEP---YKVY 162
>gi|392963663|ref|ZP_10329087.1| Deoxyribodipyrimidine photo-lyase [Fibrisoma limi BUZ 3]
gi|387847626|emb|CCH51126.1| Deoxyribodipyrimidine photo-lyase [Fibrisoma limi BUZ 3]
Length = 444
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R F+ + L QL G + G PI + +++ E + D E +RD
Sbjct: 58 RVEFIHREIQQLQAQLHQMGSTIIARYGRPIDVLKQVVEEFAVADVYTNYDYEVYAKERD 117
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
VK AE I F ++D + V+ T G P + Y
Sbjct: 118 AVVKAMLAERGIGFHTFKDQAIFDRDEVL-TGGGKPYTVFTPY 159
>gi|357466479|ref|XP_003603524.1| Cryptochrome DASH [Medicago truncatula]
gi|355492572|gb|AES73775.1| Cryptochrome DASH [Medicago truncatula]
Length = 323
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 23/150 (15%)
Query: 1 MFPGTMHIGYN-----RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55
+F T H G+ R +FLLECL DL + L G L I G P I L +
Sbjct: 134 LFATTYHFGFPKTGALRTQFLLECLDDLRKNLMKRGLNLLIQHGKPEDILPSLVKAYG-A 192
Query: 56 KLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
+ Q K+ C+E + V+ V++ L +VV+ +NG+ T
Sbjct: 193 HTVYAQ-------------KETCSE-ELNVERSVNNRLQ--QVVVPSNGSAGAATTSNSH 236
Query: 116 HTVSCI-GTMHIGYNRFRFLLECLADLDRQ 144
+ + GT ++ F + CL D+ Q
Sbjct: 237 PKLQFVWGTTMYHHDDLPFDVPCLPDVYTQ 266
>gi|329764714|ref|ZP_08256309.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329138764|gb|EGG43005.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 451
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 1/121 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R +FL E L DL+ QL L I +G I +K+ E + D ++
Sbjct: 53 RIKFLNESLKDLNEQLIKRKTNLRIFRGRSEEIIEKIILENKIDGVFLNGDYTKFAQLKE 112
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRF 131
K+KK C + NI +F + L P+ I T P Y + T I N F
Sbjct: 113 NKIKKICNQKNIGFNKFADYLLHVPD-EIHTKEQKPYTVYSYFYKTAKTIPVRSKIKNNF 171
Query: 132 R 132
R
Sbjct: 172 R 172
>gi|408372276|ref|ZP_11170016.1| deoxyribodipyrimidine photo-lyase [Galbibacter sp. ck-I2-15]
gi|407742292|gb|EKF53899.1| deoxyribodipyrimidine photo-lyase [Galbibacter sp. ck-I2-15]
Length = 435
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R ++ + L+ ++ LK+ +L G+P +F+ L + + +D E KRD
Sbjct: 53 RVDYIHQVLSAINNGLKTFNARLNTFYGNPSDVFKILSEKYAIQGVFCNRDYEPQAIKRD 112
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
+ ++ E N K F ++D V++ +G P Y Y
Sbjct: 113 SDIYQFFNERNTPFKAFKDQVIFDKNDVVKNDG-TPYTVYTPY 154
>gi|423575239|ref|ZP_17551358.1| hypothetical protein II9_02460 [Bacillus cereus MSX-D12]
gi|401209847|gb|EJR16604.1| hypothetical protein II9_02460 [Bacillus cereus MSX-D12]
Length = 476
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60
++ T IG +L + D+ RQL++ G L I +G+ + L ++L T + +
Sbjct: 35 VYDETFSIGSASKWWLHHTIIDVKRQLEALGSTLIIRKGNILEEILSLIKQLGITAVYWN 94
Query: 61 --QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99
D E L + ++K+K + IT KEF SH L +P ++
Sbjct: 95 ICYDPERL--QFNQKMKMMLEDKGITCKEFNSHLLLEPWII 133
>gi|109896483|ref|YP_659738.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica
T6c]
gi|109698764|gb|ABG38684.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudoalteromonas atlantica T6c]
Length = 445
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 48
+ H+G R+ FL + L++L R L+ G QLF+++G + + L
Sbjct: 56 SAHMGDKRWAFLQQSLSELQRHLQEQGQQLFVLEGETLEVLDAL 99
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 123 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 166
+ H+G R+ FL + L++L R L+ G QLF+++G + + L
Sbjct: 56 SAHMGDKRWAFLQQSLSELQRHLQEQGQQLFVLEGETLEVLDAL 99
>gi|411117128|ref|ZP_11389615.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
gi|410713231|gb|EKQ70732.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
Length = 493
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R ++L CL L G QL IV+ P L LN + + QD E RD
Sbjct: 51 RVSYMLGCLQSLQEGYAKVGSQLLIVKTLPQKGIVNLATTLNARAVFWNQDVEPYSRARD 110
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLT 110
+ V E I F L P+ + T G+ P T
Sbjct: 111 RTVAAALREQGIEACPFWDQLLHAPKDI--TTGSGQPYT 147
>gi|415909084|ref|ZP_11553083.1| Deoxyribodipyrimidine photo-lyase [Herbaspirillum frisingense
GSF30]
gi|407762656|gb|EKF71464.1| Deoxyribodipyrimidine photo-lyase [Herbaspirillum frisingense
GSF30]
Length = 214
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R FLL +A+LD L+ GG L ++ GS +L EL + D E +RD
Sbjct: 57 RIDFLLASVAELDAALRKAGGGLIVLHGSAAQRITELAAELEVQAVFTNADYEPAAIERD 116
Query: 72 KKVKK 76
+ V +
Sbjct: 117 QLVAR 121
>gi|260778007|ref|ZP_05886900.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
[Vibrio coralliilyticus ATCC BAA-450]
gi|260606020|gb|EEX32305.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
[Vibrio coralliilyticus ATCC BAA-450]
Length = 487
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
H +RF+ + L+D++ L ++ + +S +K+ ++ L Q+
Sbjct: 43 ANAHYSERHWRFVWQSLSDINGHLAPFNAKVMVGGCDVLSFLEKMAKQFQIEALYSHQET 102
Query: 64 E-ALWHKRDKKVKKWCAENNITVKEFVS 90
+ +RDK+V KWC + I+ EF +
Sbjct: 103 GLDVTFQRDKQVLKWCKDRQISWYEFAN 130
>gi|229521502|ref|ZP_04410921.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
[Vibrio cholerae TM 11079-80]
gi|417824454|ref|ZP_12471045.1| cryptochrome-like protein cry2 [Vibrio cholerae HE48]
gi|419829951|ref|ZP_14353437.1| DNA photolyase family protein [Vibrio cholerae HC-1A2]
gi|419832924|ref|ZP_14356386.1| DNA photolyase family protein [Vibrio cholerae HC-61A2]
gi|421354157|ref|ZP_15804489.1| cryptochrome-like protein cry2 [Vibrio cholerae HE-45]
gi|422307238|ref|ZP_16394404.1| DNA photolyase family protein [Vibrio cholerae CP1035(8)]
gi|422917138|ref|ZP_16951466.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-02A1]
gi|423819812|ref|ZP_17716070.1| DNA photolyase family protein [Vibrio cholerae HC-55C2]
gi|423853144|ref|ZP_17719862.1| DNA photolyase family protein [Vibrio cholerae HC-59A1]
gi|423880568|ref|ZP_17723464.1| DNA photolyase family protein [Vibrio cholerae HC-60A1]
gi|423997555|ref|ZP_17740814.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-02C1]
gi|424016262|ref|ZP_17756103.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-55B2]
gi|424019203|ref|ZP_17758999.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-59B1]
gi|424624745|ref|ZP_18063217.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-50A1]
gi|424629247|ref|ZP_18067544.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-51A1]
gi|424633278|ref|ZP_18071388.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-52A1]
gi|424636369|ref|ZP_18074384.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-55A1]
gi|424640306|ref|ZP_18078196.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-56A1]
gi|424648340|ref|ZP_18086010.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-57A1]
gi|443527164|ref|ZP_21093229.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-78A1]
gi|229341600|gb|EEO06603.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
[Vibrio cholerae TM 11079-80]
gi|340048139|gb|EGR09062.1| cryptochrome-like protein cry2 [Vibrio cholerae HE48]
gi|341638531|gb|EGS63178.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-02A1]
gi|395953282|gb|EJH63895.1| cryptochrome-like protein cry2 [Vibrio cholerae HE-45]
gi|408014058|gb|EKG51739.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-50A1]
gi|408019669|gb|EKG57061.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-52A1]
gi|408024805|gb|EKG61893.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-56A1]
gi|408025333|gb|EKG62392.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-55A1]
gi|408034624|gb|EKG71115.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-57A1]
gi|408057079|gb|EKG91945.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-51A1]
gi|408621536|gb|EKK94539.1| DNA photolyase family protein [Vibrio cholerae HC-1A2]
gi|408622598|gb|EKK95576.1| DNA photolyase family protein [Vibrio cholerae CP1035(8)]
gi|408635745|gb|EKL07931.1| DNA photolyase family protein [Vibrio cholerae HC-55C2]
gi|408642905|gb|EKL14649.1| DNA photolyase family protein [Vibrio cholerae HC-60A1]
gi|408643113|gb|EKL14852.1| DNA photolyase family protein [Vibrio cholerae HC-59A1]
gi|408651568|gb|EKL22824.1| DNA photolyase family protein [Vibrio cholerae HC-61A2]
gi|408853487|gb|EKL93280.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-02C1]
gi|408861094|gb|EKM00693.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-55B2]
gi|408868698|gb|EKM08018.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-59B1]
gi|443454570|gb|ELT18372.1| cryptochrome-like protein cry2 [Vibrio cholerae HC-78A1]
Length = 499
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60
M G H +RF+ + L ++R L G++ IV + F +L +
Sbjct: 40 MLLGDAHYSERHWRFVWQSLQAINRDLAQSKGEVLIVTSDWQTCFSRLAERYAIEAIYSH 99
Query: 61 QDCE-ALWHKRDKKVKKWCAENNITVKEF 88
Q+ A +RD + +WC +++I EF
Sbjct: 100 QEVGLACTFQRDLALAQWCQQHDIVWHEF 128
>gi|254225326|ref|ZP_04918938.1| cryptochrome Cry2 [Vibrio cholerae V51]
gi|125622167|gb|EAZ50489.1| cryptochrome Cry2 [Vibrio cholerae V51]
Length = 504
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60
M G H +RF+ + L ++R L G++ IV + F +L +
Sbjct: 40 MLLGDAHYSERHWRFVWQSLQAINRDLAQSKGEVLIVTSDWQTCFSRLAERYAIEAIYSH 99
Query: 61 QDCE-ALWHKRDKKVKKWCAENNITVKEF 88
Q+ A +RD + +WC +++I EF
Sbjct: 100 QEVGLACTFQRDLALAQWCQQHDIVWHEF 128
>gi|410861787|ref|YP_006977021.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii AltDE1]
gi|410819049|gb|AFV85666.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii AltDE1]
Length = 435
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G +G +R FLL+ L+DL +QL G +L I++G+ +L +T L Q C
Sbjct: 60 GFSPMGKHRHTFLLQTLSDLKQQLNQRGHELLILKGNTAECIVQLLNAGGYTHLGVSQHC 119
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99
+ VK++ N + V E + L+D EV+
Sbjct: 120 GFDETAQLNTVKRFF--NTLRVIETPTFGLFDAEVL 153
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
+ G +G +R FLL+ L+DL +QL G +L I++G+ +L +T L
Sbjct: 57 AAFGFSPMGKHRHTFLLQTLSDLKQQLNQRGHELLILKGNTAECIVQLLNAGGYTHLGVS 116
Query: 179 QDC 181
Q C
Sbjct: 117 QHC 119
>gi|91223149|ref|ZP_01258415.1| deoxyribodipyrimidine photolyase, putative [Vibrio alginolyticus
12G01]
gi|91191962|gb|EAS78225.1| deoxyribodipyrimidine photolyase, putative [Vibrio alginolyticus
12G01]
Length = 493
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD---- 62
H +RF+ + L D+D LK++G ++ ++ ++ FQ ++ + + ++
Sbjct: 46 HYSERHWRFVWQSLQDMDETLKAYGHRITVLFDDALACFQSIQAQYQINAVFSHREIGLN 105
Query: 63 CEALWHKRDKKVKKWCAENNITVKEF 88
C +RD++V W E NI EF
Sbjct: 106 CT---FERDRQVAAWLYEQNIDWFEF 128
>gi|443927307|gb|ELU45814.1| cryptochrome-2 [Rhizoctonia solani AG-1 IA]
Length = 572
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 28/97 (28%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G NRF FL+E + DL Q L R N +KL +
Sbjct: 41 VGVNRFNFLIESMNDLS---------------------QSLTRLNNKSKLL-------VI 72
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+RDK+V++ ++ + V + + H+L+ P V++ NG
Sbjct: 73 RERDKRVREIAIKSKVEVIDVLGHSLYHPAEVLEKNG 109
>gi|254438241|ref|ZP_05051735.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
307]
gi|198253687|gb|EDY78001.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
307]
Length = 511
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HKRD 71
+ F+ +CL DLD L G L + G + ++L E + + + ++ LW +KRD
Sbjct: 53 WHFIHDCLCDLDSALAEMGQNLIVKVGDACEVIKELHLEHHVSDVYAHEETGNLWTYKRD 112
Query: 72 KKVKKWCAENNITV 85
V+K C + I +
Sbjct: 113 IAVEKLCLNDGIAL 126
>gi|423605178|ref|ZP_17581071.1| hypothetical protein IIK_01759 [Bacillus cereus VD102]
gi|401244326|gb|EJR50690.1| hypothetical protein IIK_01759 [Bacillus cereus VD102]
Length = 476
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60
++ T IG +L + D+ RQL++ G L I +G+ + L +L T + +
Sbjct: 35 VYDETFSIGSASKWWLHHTIIDVKRQLEALGSTLIIRKGNTMEEILSLIEQLGITAVYWN 94
Query: 61 --QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99
D E L + ++K+K + IT KEF SH L +P ++
Sbjct: 95 ICYDPERL--QFNQKMKMMLEDKGITCKEFNSHLLLEPWII 133
>gi|296105770|ref|YP_003617470.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
Alcoy]
gi|295647671|gb|ADG23518.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
Alcoy]
Length = 471
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+G + +L L L + L G L + +GSP+ I +L + + + + E
Sbjct: 43 LGQAQAWWLHHSLIALGKSLNQQGLSLVLRKGSPLEIILELVTQYGLESVYWNRCYEPQV 102
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
RDKK+K E I V F + L +P + NG+
Sbjct: 103 IARDKKIKLALGEKGIKVHSFNGNLLHEPWTIKNKNGD 140
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.327 0.142 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,970,704,133
Number of Sequences: 23463169
Number of extensions: 117857107
Number of successful extensions: 296147
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 347
Number of HSP's that attempted gapping in prelim test: 293933
Number of HSP's gapped (non-prelim): 2305
length of query: 184
length of database: 8,064,228,071
effective HSP length: 133
effective length of query: 51
effective length of database: 9,238,593,890
effective search space: 471168288390
effective search space used: 471168288390
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 72 (32.3 bits)