BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17626
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7PYI7|CRY1_ANOGA Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 SV=4
Length = 545
Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 92/133 (69%), Gaps = 2/133 (1%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR +FLLE LADLDRQ + GGQL + +G +++ ++L ELN KLC+EQDC
Sbjct: 51 GTRIVGYNRMKFLLESLADLDRQFRDLGGQLLVFRGDSVTVLRRLFEELNIKKLCYEQDC 110
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG- 122
E +W +RD V K C ++ E VSHTLW+P VIQTNG++PPLTY+M+LHTV+ IG
Sbjct: 111 EPIWKERDDAVAKLCRTMDVRCVENVSHTLWNPIEVIQTNGDIPPLTYQMFLHTVNIIGD 170
Query: 123 -TMHIGYNRFRFL 134
+G F ++
Sbjct: 171 PPRPVGAPNFEYV 183
Score = 80.1 bits (196), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 49/72 (68%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
+ +++ GT +GYNR +FLLE LADLDRQ + GGQL + +G +++ ++L EL
Sbjct: 40 FPIFIFDGESAGTRIVGYNRMKFLLESLADLDRQFRDLGGQLLVFRGDSVTVLRRLFEEL 99
Query: 171 NFTKLCFEQDCE 182
N KLC+EQDCE
Sbjct: 100 NIKKLCYEQDCE 111
>sp|Q17DK5|CRY1_AEDAE Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1
Length = 545
Score = 147 bits (371), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 88/119 (73%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +G+NR +FLLE LADLDRQL+ GGQL++ +G+ +++ ++L ELN KLCFEQDC
Sbjct: 49 GTKLVGFNRMKFLLESLADLDRQLREIGGQLYVFKGNAVNVMRRLFEELNIRKLCFEQDC 108
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122
E +W RD ++ C ++ E VSHTLWDP+ +I+TNG +PPLTY+M+LHTV IG
Sbjct: 109 EPIWKARDDAIQNLCRMMDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQMFLHTVDIIG 167
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 52/72 (72%)
Query: 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
Y +++ GT +G+NR +FLLE LADLDRQL+ GGQL++ +G+ +++ ++L EL
Sbjct: 38 YPIFIFDGESAGTKLVGFNRMKFLLESLADLDRQLREIGGQLYVFKGNAVNVMRRLFEEL 97
Query: 171 NFTKLCFEQDCE 182
N KLCFEQDCE
Sbjct: 98 NIRKLCFEQDCE 109
>sp|O77059|CRY1_DROME Cryptochrome-1 OS=Drosophila melanogaster GN=cry PE=1 SV=1
Length = 542
Score = 139 bits (351), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 88/122 (72%), Gaps = 3/122 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIE 107
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
QDCE +W++RD+ ++ C E NI E VSHTLWDP++VI+TNG +PPLTY+M+LHTV
Sbjct: 108 QDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQI 167
Query: 121 IG 122
IG
Sbjct: 168 IG 169
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 178
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIE 107
Query: 179 QDCE 182
QDCE
Sbjct: 108 QDCE 111
>sp|Q293P8|CRY1_DROPS Cryptochrome-1 OS=Drosophila pseudoobscura pseudoobscura GN=cry
PE=3 SV=2
Length = 540
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 84/123 (68%), Gaps = 3/123 (2%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT +GYNR RFLL+ L DLD QL+S G+LF+ +G P IF++L ++ K+C E
Sbjct: 48 GTKSVGYNRMRFLLDSLQDLDEQLQSATEGRGRLFVFEGEPTLIFRRLHEQVRLHKICAE 107
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
DCE +W++RD+ + C E I E VSHTLWDP +VI+TNG +PPLTY+M+LHTV
Sbjct: 108 LDCEPIWNERDESARLLCRELGIEYVEKVSHTLWDPRLVIETNGGIPPLTYQMFLHTVQI 167
Query: 121 IGT 123
IG
Sbjct: 168 IGV 170
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 178
GT +GYNR RFLL+ L DLD QL+S G+LF+ +G P IF++L ++ K+C E
Sbjct: 48 GTKSVGYNRMRFLLDSLQDLDEQLQSATEGRGRLFVFEGEPTLIFRRLHEQVRLHKICAE 107
Query: 179 QDCE 182
DCE
Sbjct: 108 LDCE 111
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1
Length = 586
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1
Length = 586
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1
Length = 606
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + VS
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVS 158
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1
Length = 588
Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + VS
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVS 158
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1
Length = 620
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E N KL E D E +
Sbjct: 90 EWNIAKLSIEYDSEPF 105
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2
Length = 620
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E N KL E D E +
Sbjct: 90 EWNIAKLSIEYDSEPF 105
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1
Length = 587
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 75/125 (60%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +L +++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLLVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E +RD +KK E + V +SHTL+D + +I+ NG PPLTYK + +S +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 122 GTMHI 126
+ I
Sbjct: 161 EPLEI 165
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ ++G NR+RFLL+CL DLD L+ +L +++G P +F +L +E N TKL E D
Sbjct: 43 GSSNVGINRWRFLLQCLEDLDANLRKLNSRLLVIRGQPADVFPRLFKEWNITKLSIEYDS 102
Query: 182 EAY 184
E +
Sbjct: 103 EPF 105
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1
Length = 621
Score = 103 bits (258), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 73/118 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E + KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWSIAKLSIEY 100
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD +KK +E + V +SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 117 TVSCI--------GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
TV C+ G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +
Sbjct: 30 TVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 89
Query: 169 ELNFTKLCFEQDCEAY 184
E + KL E D E +
Sbjct: 90 EWSIAKLSIEYDSEPF 105
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1
Length = 592
Score = 97.8 bits (242), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 59 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 118
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 119 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALIS 176
Score = 60.5 bits (145), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 65 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 123
>sp|Q923I8|CRY2_RAT Cryptochrome-2 OS=Rattus norvegicus GN=Cry2 PE=2 SV=1
Length = 594
Score = 97.8 bits (242), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 59 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 118
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 119 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALIS 176
Score = 60.5 bits (145), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 65 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 123
>sp|Q49AN0|CRY2_HUMAN Cryptochrome-2 OS=Homo sapiens GN=CRY2 PE=1 SV=2
Length = 593
Score = 97.8 bits (242), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL+D + +I+ NG PPLTYK + +S
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIIS 177
Score = 60.5 bits (145), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E +
Sbjct: 66 VGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPF 124
>sp|Q8QG60|CRY2_CHICK Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2
Length = 582
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 69/118 (58%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 50 FAASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEY 109
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
D E +RD + K E + V SHTL++ + +I+ NGN PPLTYK + +S
Sbjct: 110 DSEPFGKERDAAIIKLAKEAGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIIS 167
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
+ +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D
Sbjct: 52 ASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEYDS 111
Query: 182 EAY 184
E +
Sbjct: 112 EPF 114
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2
Length = 556
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD LK G +L + +G P + + +E +LCFE D
Sbjct: 72 PGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYD 131
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
+ + D KVK + + + V VSHTL++P +I+ NG PPL+Y+ +L
Sbjct: 132 TDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVA 187
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G+ G NR RFLLE L DLD LK G +L + +G P + + +E +LCFE D
Sbjct: 73 GSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDT 132
Query: 182 EAY 184
+ Y
Sbjct: 133 DPY 135
>sp|Q0E2Y1|UVR3_ORYSJ (6-4)DNA photolyase OS=Oryza sativa subsp. japonica GN=UVR3 PE=3
SV=1
Length = 551
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QGSPISIFQKLKRELNFTKLC 58
PG+ G R RFLLE L+DLD +L+ G +L ++ G ++ N KLC
Sbjct: 63 PGSARAGVARVRFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLC 122
Query: 59 FEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
FE D E RDKKV + A + I V VSHTL+DP +I+ NG PP+TY+ ++
Sbjct: 123 FESDTEPYALARDKKVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFV 179
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 116 HTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QGSPISIFQKLKRELN 171
G+ G R RFLLE L+DLD +L+ G +L ++ G ++ N
Sbjct: 58 QAAPSPGSARAGVARVRFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWN 117
Query: 172 FTKLCFEQDCEAY 184
KLCFE D E Y
Sbjct: 118 IGKLCFESDTEPY 130
>sp|Q4KML2|CRYD_DANRE Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2
Length = 520
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 2 FPGTMH-----IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFT 55
+ GT H G R RFLL+ + DL LK HG L + QG P + +L ++L + +
Sbjct: 44 YQGTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVS 103
Query: 56 KLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYL 115
+ F ++ + ++K+K+ C +N + V+ F TL+ + + ++ P Y +
Sbjct: 104 TVAFHEEVASEEKSVEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFR 163
Query: 116 HTVSCIGTM 124
V G +
Sbjct: 164 KAVEAQGRV 172
Score = 36.6 bits (83), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 122 GTMH-----IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKL 175
GT H G R RFLL+ + DL LK HG L + QG P + +L ++L + + +
Sbjct: 46 GTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTV 105
Query: 176 CFEQDCEA 183
F ++ +
Sbjct: 106 AFHEEVAS 113
>sp|Q05380|YAT1_SYNP1 Uncharacterized 31.6 kDa protein in atpI 5'region OS=Synechococcus
sp. (strain PCC 6716) PE=4 SV=1
Length = 284
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 9/111 (8%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW 67
+ R +LL CL L + GG L +VQG P + ++ L T + + +D E
Sbjct: 48 VAAVRVAYLLGCLQALKEAYQQRGGCLLMVQGDPRQVIPEVATTLKATAVHWHEDVEPYA 107
Query: 68 HKRDKKVKKWCAENNITVKEFVSHTLWD----PEVVIQTNGNVPPLTYKMY 114
+RD+ V + I V H WD P +QT P Y +
Sbjct: 108 RERDRVVAATLNDLGIAV-----HRQWDQLLHPPSAVQTQQGQPYTVYTPF 153
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 20/118 (16%)
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHI 126
WH+RD ++ +N+ + HT P ++ + + +
Sbjct: 9 WHRRDLRLA-----DNLGLYAARQHT---------------PTVVGVFCFDPALLQGQDV 48
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
R +LL CL L + GG L +VQG P + ++ L T + + +D E Y
Sbjct: 49 AAVRVAYLLGCLQALKEAYQQRGGCLLMVQGDPRQVIPEVATTLKATAVHWHEDVEPY 106
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4
Length = 484
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
+ + R +L CL +L ++ + G +L ++QG P + +L ++L + + QD E
Sbjct: 44 SADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIE 103
Query: 65 ALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
RD +V I + L P+ ++ +GN Y +Y
Sbjct: 104 PYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGN----PYSVY 149
Score = 37.4 bits (85), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 123 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 182
+ + R +L CL +L ++ + G +L ++QG P + +L ++L + + QD E
Sbjct: 44 SADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIE 103
Query: 183 AY 184
Y
Sbjct: 104 PY 105
>sp|Q7NMD1|CRYD_GLOVI Cryptochrome DASH OS=Gloeobacter violaceus (strain PCC 7421) GN=cry
PE=3 SV=1
Length = 500
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF--EQ 61
G G R RFLLE +ADL R L+ G L + +G P + L EL + + E
Sbjct: 49 GFEKTGPFRARFLLESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEV 108
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
E L +RD + A N+ V+ F TL P+
Sbjct: 109 TSEELVVERDLQAA--LAPLNVPVRSFWGTTLVHPD 142
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
+ G G R RFLLE +ADL R L+ G L + +G P + L EL + +
Sbjct: 46 APFGFEKTGPFRARFLLESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYH 105
Query: 179 QDC 181
+
Sbjct: 106 GEV 108
>sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica (strain SH1) GN=cry
PE=3 SV=2
Length = 488
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R RFL+E L DL +L+S GG+L + G P ++ Q L L + F +
Sbjct: 46 GFQRTGPFRARFLIENLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEP 105
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPL 109
+ V++ C ++ I TL P+ + + P L
Sbjct: 106 RTEEADTAESVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPEL 151
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 121 IGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
+G G R RFL+E L DL +L+S GG+L + G P ++ Q L L + F +
Sbjct: 45 LGFQRTGPFRARFLIENLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHE 104
>sp|Q9HQ46|PHR_HALSA Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=phr PE=3
SV=2
Length = 481
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 65
H R F+L+ LA L + + G L + G P ++ + +L+ T++ + D
Sbjct: 49 AHAAPPRVAFMLDALAALRERYRDLGSDLIVRHGDPAAVLPAVANDLDATRVVWNHDYSG 108
Query: 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLH 116
L RD V+ + +F P I+TN P Y +Y +
Sbjct: 109 LATDRDAGVRDALDAAGVAHAQFHDAVHHRPG-EIRTNAGDP---YSVYTY 155
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180
H R F+L+ LA L + + G L + G P ++ + +L+ T++ + D
Sbjct: 49 AHAAPPRVAFMLDALAALRERYRDLGSDLIVRHGDPAAVLPAVANDLDATRVVWNHD 105
>sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1
Length = 523
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKLCFE 60
FP T G +R +FLLE + DL LK G L + +G P + + L ++L N + +
Sbjct: 53 FPKT---GPHRLKFLLESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLH 109
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120
++ + VK+ C I + F TL+ E + + + P Y + V
Sbjct: 110 EEATKEETDVESAVKQACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVET 169
Query: 121 IGTM 124
G +
Sbjct: 170 QGKV 173
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKLCFEQDC 181
G +R +FLLE + DL LK G L + +G P + + L ++L N + + ++
Sbjct: 57 GPHRLKFLLESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEA 112
>sp|Q3IPX9|CRYD_NATPD Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=cry PE=3 SV=1
Length = 474
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D +W + D +V +N T+ + V+ E VI P T+ +T S
Sbjct: 2 DTAVVWFRDDLRVT-----DNPTLADAVAAA----ETVI------PVYTFDPDRYTESEY 46
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 166
G G +R F + +ADL L+ GG L + G P ++ +L
Sbjct: 47 GPPKTGGHRAVFRRQAVADLRASLRDRGGDLLVRSGRPATVVPEL 91
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 40/94 (42%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G +R F + +ADL L+ GG L + G P ++ +L + + +
Sbjct: 47 GPPKTGGHRAVFRRQAVADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKP 106
Query: 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
+R V + I +++ +HTL+ P+
Sbjct: 107 ATEERRRAADVASALDDAGIALRQRWTHTLYHPD 140
>sp|P12768|PHR_STRGR Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr
PE=3 SV=1
Length = 455
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
N FL +CLA LD L+ GG+L + +G + +++ E ++ +R
Sbjct: 49 NPLAFLADCLAALDAGLRHRGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRYAARR 108
Query: 71 DKKVKKWCAENN--ITVKEFVSHTLWDPEVVIQTNG 104
++++++ A++ + V + V L P V+ T G
Sbjct: 109 EQRIREALADSGRELHVHDAVVTAL-APGRVVPTGG 143
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
N FL +CLA LD L+ GG+L + +G + +++ E ++ Y
Sbjct: 49 NPLAFLADCLAALDAGLRHRGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRY 104
>sp|Q8LB72|PHR2_ARATH Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2
SV=2
Length = 447
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWH 68
G R +FL+E +++L + L++ G L + G P ++ +L +E+ + ++
Sbjct: 165 GPFRAQFLIESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEV 224
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLW 94
K + K++ E + VK F TL+
Sbjct: 225 KAEGKIETAMKEEGVEVKYFWGSTLY 250
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 119 SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170
S G G R +FL+E +++L + L++ G L + G P ++ +L +E+
Sbjct: 157 SSSGFDKTGPFRAQFLIESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEI 208
>sp|Q55081|PHR_SYNY3 Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=phrA PE=1 SV=1
Length = 488
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 37/94 (39%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD 71
R +LL CL L + G +L + Q P+ + KL L + + D E KRD
Sbjct: 65 RVAYLLGCLQSLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRD 124
Query: 72 KKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN 105
V + E + + + P V+ G+
Sbjct: 125 LAVAQALRERGLAIATEWDQLMHHPGEVLTQAGS 158
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 130 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
R +LL CL L + G +L + Q P+ + KL L + + D E Y
Sbjct: 65 RVAYLLGCLQSLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPY 119
>sp|Q9KS67|CRY2_VIBCH Cryptochrome-like protein cry2 OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=cry2 PE=1
SV=1
Length = 504
Score = 37.0 bits (84), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60
M G H +RF+ + L ++R L G++ IV + F ++ +
Sbjct: 40 MLLGDAHYSERHWRFVWQSLQAINRDLAQSKGEVLIVTSDWQTCFARIAERYAIEAIYSH 99
Query: 61 QDCE-ALWHKRDKKVKKWCAENNITVKEF 88
Q+ A +RD + +WC +++I EF
Sbjct: 100 QEVGLACTFQRDLALAQWCQQHDIVWHEF 128
>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=CRYD PE=2 SV=1
Length = 582
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 53
FP T G R +FL+ECL DL R L G L I G P I + + +
Sbjct: 132 FPKT---GALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVT 180
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 171
G G R +FL+ECL DL R L G L I G P I + + +
Sbjct: 131 GFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVT 180
>sp|Q08D51|ATG2A_XENTR Autophagy-related protein 2 homolog A OS=Xenopus tropicalis GN=atg2a
PE=2 SV=1
Length = 1997
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFI-VQGSPISIFQKLKRELNFTKLCFE 60
F ++ I R E + ++L H G++ + V+ I K + + + + LC +
Sbjct: 976 FSASVTILKGRITAWTEAKGEGAKKLDDHHGEVVLDVENGCIFSVSKYRGKEDLSYLCIQ 1035
Query: 61 QDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG 104
+ AL+HK VK + A ++ + F+ T DP + + G
Sbjct: 1036 SESVALYHK--ATVKDYLAPVSLEIPTFLHPTNLDPTIYLSEEG 1077
>sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum
lycopersicum GN=CRYD PE=3 SV=2
Length = 577
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%)
Query: 117 TVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168
T G G R +F++ECL DL R L G L I G P I L +
Sbjct: 119 TTHYFGMPKTGALRAQFIIECLNDLKRNLVKRGLDLLIQHGKPEDIVPSLAK 170
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR 50
G G R +F++ECL DL R L G L I G P I L +
Sbjct: 124 GMPKTGALRAQFIIECLNDLKRNLVKRGLDLLIQHGKPEDIVPSLAK 170
>sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=CRYD PE=1 SV=2
Length = 569
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 23/57 (40%)
Query: 115 LHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 171
HT G R FL+ECL DL + L G L I G P I L ++
Sbjct: 123 FHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFG 179
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 53
FP T G R FL+ECL DL + L G L I G P I L ++
Sbjct: 131 FPKT---GALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFG 179
>sp|B8GMX9|TAL_THISH Transaldolase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=tal PE=3
SV=1
Length = 373
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 102 TNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPIS 161
T +PP TY+ +L S T+ G R + LADL L+S +L + I
Sbjct: 296 TVNTLPPATYRAFLDHGSVAETLAEGVETARAQVAALADLGIDLESITDRL---ESEGIE 352
Query: 162 IFQKLKREL 170
FQK R L
Sbjct: 353 AFQKAFRHL 361
>sp|Q8I0F4|LIS1_DICDI Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1
SV=1
Length = 419
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 70 RDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN-VPPLTYKMYLHTVSCI-GTMHIG 127
RDK +K W A +K V H W ++ + +G+ + + + T + + G
Sbjct: 210 RDKTIKVWEAATGYCIKTLVGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGECLAT 269
Query: 128 YNRFRFLLECLA 139
Y ++ECLA
Sbjct: 270 YREHSHVVECLA 281
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
Length = 612
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQG-SPISIFQKLKRELNFTKLCFEQD 62
G + G ++ + LA L + LK+ G L +++ + IS R TK+ F
Sbjct: 44 GQFYPGRASRWWMKQSLAHLSQSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHL 103
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDP 96
+ + RD VK+ E I+V+ + L++P
Sbjct: 104 YDPVSLVRDHTVKEKLVERGISVQSYNGDLLYEP 137
>sp|Q6BUA6|LIS1_DEBHA Nuclear distribution protein PAC1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=PAC1 PE=3 SV=2
Length = 529
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 69 KRDKKVKKWCAENNITVKEFVSHTLWDPEV-VIQTNGNV 106
RDK VK W N +K F+ H+ W ++ VI N N+
Sbjct: 243 SRDKSVKVWDLVNGYCIKTFIGHSDWVRDIDVISVNSNL 281
>sp|B9MJT8|MIAA_CALBD tRNA dimethylallyltransferase OS=Caldicellulosiruptor bescii
(strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=miaA PE=3
SV=1
Length = 312
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 35 FIVQGSPISIFQKLKRE----LNFTKLCFEQDCEALWHKRDKKVKK 76
F+ P K++R+ N LCF + EALW + D++V+K
Sbjct: 171 FLTGKKPTEFLDKVRRKGSERYNVLPLCFIMEREALWQRIDQRVEK 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.142 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,175,461
Number of Sequences: 539616
Number of extensions: 2868633
Number of successful extensions: 7689
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7611
Number of HSP's gapped (non-prelim): 81
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)