Query psy17626
Match_columns 184
No_of_seqs 278 out of 1980
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 18:52:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00875 DNA_photolyase: DNA p 100.0 1.1E-27 2.4E-32 175.5 12.4 116 7-123 42-157 (165)
2 TIGR02765 crypto_DASH cryptoch 99.9 1.1E-22 2.5E-27 169.5 14.4 114 6-120 49-162 (429)
3 TIGR03556 photolyase_8HDF deox 99.9 2E-22 4.3E-27 169.5 14.5 116 6-122 43-158 (471)
4 TIGR02766 crypt_chrom_pln cryp 99.9 9.4E-22 2E-26 165.8 13.9 115 7-122 40-155 (475)
5 COG0415 PhrB Deoxyribodipyrimi 99.9 8.2E-22 1.8E-26 162.4 12.6 116 7-123 44-159 (461)
6 PRK10674 deoxyribodipyrimidine 99.9 9E-21 2E-25 159.5 13.2 113 5-120 44-160 (472)
7 TIGR00591 phr2 photolyase PhrI 99.8 3.4E-19 7.3E-24 149.6 11.6 109 7-119 67-175 (454)
8 KOG0133|consensus 99.6 5.9E-15 1.3E-19 123.4 6.6 121 4-124 45-165 (531)
9 PF00875 DNA_photolyase: DNA p 99.3 1.1E-11 2.3E-16 90.8 6.2 60 125-184 42-101 (165)
10 TIGR02765 crypto_DASH cryptoch 99.1 6.7E-11 1.4E-15 98.9 3.7 61 124-184 49-109 (429)
11 TIGR03556 photolyase_8HDF deox 99.1 1.3E-10 2.7E-15 98.3 4.2 64 121-184 40-103 (471)
12 TIGR02766 crypt_chrom_pln cryp 99.0 2.5E-10 5.4E-15 96.7 4.0 71 114-184 29-100 (475)
13 COG0415 PhrB Deoxyribodipyrimi 99.0 4.4E-10 9.5E-15 93.4 4.4 72 111-184 32-103 (461)
14 PRK10674 deoxyribodipyrimidine 99.0 5.2E-10 1.1E-14 94.6 4.1 63 122-184 43-109 (472)
15 TIGR00591 phr2 photolyase PhrI 98.9 4.1E-09 8.9E-14 88.8 6.9 58 127-184 69-126 (454)
16 KOG0133|consensus 98.5 1.8E-07 3.9E-12 79.0 4.3 77 108-184 31-107 (531)
17 PF04244 DPRP: Deoxyribodipyri 97.4 0.0021 4.5E-08 49.4 9.7 109 9-120 40-156 (224)
18 COG3046 Uncharacterized protei 94.9 0.58 1.2E-05 39.0 10.9 107 10-119 45-155 (505)
19 PRK12652 putative monovalent c 92.2 0.76 1.7E-05 37.8 7.3 50 39-88 99-149 (357)
20 PRK09982 universal stress prot 91.7 3.3 7.2E-05 28.9 9.7 67 19-87 69-136 (142)
21 COG1609 PurR Transcriptional r 91.2 7 0.00015 31.7 12.8 161 14-181 71-247 (333)
22 TIGR01490 HAD-SF-IB-hyp1 HAD-s 90.5 2.3 5E-05 31.4 8.1 68 17-84 89-170 (202)
23 cd06287 PBP1_LacI_like_8 Ligan 89.3 8.6 0.00019 29.8 11.5 163 8-180 14-187 (269)
24 COG0560 SerB Phosphoserine pho 89.0 2.4 5.2E-05 32.2 7.1 65 20-84 82-159 (212)
25 PF00532 Peripla_BP_1: Peripla 88.9 9.8 0.00021 29.9 14.4 155 13-180 13-189 (279)
26 PRK14719 bifunctional RNAse/5- 88.9 1.9 4.2E-05 35.6 6.9 61 26-86 37-99 (360)
27 PF10087 DUF2325: Uncharacteri 87.6 5.2 0.00011 26.2 7.3 68 20-91 12-84 (97)
28 COG2217 ZntA Cation transport 86.8 2.7 5.9E-05 37.8 7.0 63 22-89 544-606 (713)
29 PRK15005 universal stress prot 86.2 2.7 5.9E-05 29.1 5.6 45 18-62 70-116 (144)
30 PRK15456 universal stress prot 86.1 2.3 5.1E-05 29.5 5.3 45 18-62 68-114 (142)
31 TIGR01088 aroQ 3-dehydroquinat 85.8 10 0.00023 26.9 8.4 71 28-102 38-111 (141)
32 PRK13015 3-dehydroquinate dehy 85.2 11 0.00025 26.8 8.5 71 28-102 40-113 (146)
33 TIGR00289 conserved hypothetic 85.1 7.2 0.00016 29.9 7.8 66 18-86 45-115 (222)
34 PF01261 AP_endonuc_2: Xylose 83.4 15 0.00033 26.8 11.0 134 47-182 2-166 (213)
35 TIGR00290 MJ0570_dom MJ0570-re 83.1 7.9 0.00017 29.8 7.2 65 19-86 46-115 (223)
36 PF00702 Hydrolase: haloacid d 82.5 4 8.6E-05 30.1 5.4 40 17-56 129-168 (215)
37 TIGR01488 HAD-SF-IB Haloacid D 82.5 2.2 4.8E-05 30.7 3.9 42 19-60 77-118 (177)
38 KOG1615|consensus 82.0 2.6 5.6E-05 31.8 4.0 43 19-61 92-136 (227)
39 PRK11175 universal stress prot 81.9 23 0.0005 27.9 16.8 160 20-179 71-269 (305)
40 cd06297 PBP1_LacI_like_12 Liga 81.5 22 0.00047 27.3 13.7 158 14-181 12-190 (269)
41 PF06415 iPGM_N: BPG-independe 81.3 11 0.00024 28.9 7.4 76 18-93 14-106 (223)
42 cd01987 USP_OKCHK USP domain i 81.0 9.1 0.0002 25.6 6.4 43 20-62 51-94 (124)
43 COG1139 Uncharacterized conser 80.4 15 0.00032 31.1 8.3 69 16-88 63-133 (459)
44 PRK09484 3-deoxy-D-manno-octul 80.3 6.9 0.00015 28.8 6.0 51 28-84 61-111 (183)
45 PF12710 HAD: haloacid dehalog 80.3 5.8 0.00013 28.8 5.6 41 22-62 96-138 (192)
46 PF13419 HAD_2: Haloacid dehal 80.1 14 0.00031 25.8 7.5 63 20-83 82-148 (176)
47 TIGR01491 HAD-SF-IB-PSPlk HAD- 79.2 5.3 0.00011 29.3 5.1 39 21-59 86-124 (201)
48 TIGR01488 HAD-SF-IB Haloacid D 79.1 5.1 0.00011 28.8 4.9 43 137-179 77-119 (177)
49 PRK10826 2-deoxyglucose-6-phos 79.1 6.6 0.00014 29.6 5.7 64 20-84 97-164 (222)
50 TIGR01490 HAD-SF-IB-hyp1 HAD-s 79.0 7.4 0.00016 28.7 5.8 42 137-178 91-132 (202)
51 TIGR01544 HAD-SF-IE haloacid d 78.5 4.8 0.0001 32.0 4.8 44 136-179 124-171 (277)
52 COG0560 SerB Phosphoserine pho 78.4 5.6 0.00012 30.2 5.1 44 136-179 80-123 (212)
53 TIGR01512 ATPase-IB2_Cd heavy 78.4 13 0.00027 32.4 7.8 46 16-61 363-409 (536)
54 PF02571 CbiJ: Precorrin-6x re 77.8 16 0.00034 28.6 7.5 66 23-90 33-101 (249)
55 cd01988 Na_H_Antiporter_C The 77.6 11 0.00023 25.3 6.0 48 15-62 53-103 (132)
56 PRK01122 potassium-transportin 77.6 20 0.00043 32.4 8.8 59 19-82 449-507 (679)
57 TIGR01544 HAD-SF-IE haloacid d 77.5 5.4 0.00012 31.7 4.9 43 19-61 125-171 (277)
58 PRK09856 fructoselysine 3-epim 77.5 31 0.00068 26.8 12.3 151 30-181 3-182 (275)
59 TIGR01491 HAD-SF-IB-PSPlk HAD- 77.5 5.8 0.00013 29.0 4.9 42 137-178 84-125 (201)
60 PRK05723 flavodoxin; Provision 77.3 24 0.00051 25.2 9.6 66 104-169 60-144 (151)
61 cd01427 HAD_like Haloacid deha 77.2 8.9 0.00019 25.5 5.5 48 16-63 25-76 (139)
62 PRK14010 potassium-transportin 76.9 21 0.00045 32.2 8.8 61 20-85 446-506 (673)
63 cd01989 STK_N The N-terminal d 76.7 14 0.00029 25.6 6.4 44 19-62 66-112 (146)
64 TIGR01525 ATPase-IB_hvy heavy 76.3 23 0.0005 31.0 8.9 45 16-60 385-430 (556)
65 PRK12652 putative monovalent c 76.2 12 0.00027 30.8 6.8 27 157-183 99-125 (357)
66 PF00702 Hydrolase: haloacid d 75.7 8.7 0.00019 28.3 5.5 44 135-178 129-174 (215)
67 PRK11133 serB phosphoserine ph 75.3 25 0.00054 28.6 8.3 45 17-61 183-227 (322)
68 TIGR00338 serB phosphoserine p 74.9 5.8 0.00013 29.7 4.3 42 19-60 89-130 (219)
69 TIGR01497 kdpB K+-transporting 74.8 32 0.00069 31.1 9.4 59 19-82 450-508 (675)
70 cd01994 Alpha_ANH_like_IV This 74.8 24 0.00052 26.4 7.5 64 19-86 46-118 (194)
71 PRK10490 sensor protein KdpD; 74.6 22 0.00047 33.1 8.6 76 10-89 296-373 (895)
72 TIGR01670 YrbI-phosphatas 3-de 74.2 17 0.00037 25.8 6.5 55 23-83 36-90 (154)
73 cd06291 PBP1_Qymf_like Ligand 73.7 37 0.0008 25.7 12.1 154 14-180 12-182 (265)
74 TIGR01428 HAD_type_II 2-haloal 73.3 19 0.00041 26.4 6.7 11 40-50 96-106 (198)
75 PRK15118 universal stress glob 73.2 27 0.00059 24.0 10.5 65 23-88 70-137 (144)
76 PRK10953 cysJ sulfite reductas 73.1 39 0.00085 30.0 9.5 92 64-156 72-183 (600)
77 cd01987 USP_OKCHK USP domain i 72.8 21 0.00045 23.8 6.4 43 137-179 50-93 (124)
78 PRK10116 universal stress prot 72.6 28 0.0006 23.8 10.2 60 28-88 74-137 (142)
79 PRK08057 cobalt-precorrin-6x r 72.5 37 0.00079 26.5 8.3 54 34-89 44-99 (248)
80 PF12710 HAD: haloacid dehalog 72.2 13 0.00027 27.0 5.5 41 140-180 96-138 (192)
81 PF04244 DPRP: Deoxyribodipyri 71.9 18 0.0004 27.8 6.4 50 129-178 42-98 (224)
82 cd06277 PBP1_LacI_like_1 Ligan 71.8 42 0.0009 25.5 13.7 72 13-91 14-89 (268)
83 TIGR03679 arCOG00187 arCOG0018 71.8 42 0.00091 25.5 8.5 64 19-86 44-116 (218)
84 cd00293 USP_Like Usp: Universa 71.5 18 0.00038 23.7 5.8 47 15-61 53-101 (130)
85 cd06272 PBP1_hexuronate_repres 70.7 43 0.00094 25.3 13.1 159 13-181 11-182 (261)
86 COG2217 ZntA Cation transport 70.6 5.5 0.00012 36.0 3.7 45 136-180 540-584 (713)
87 PF05368 NmrA: NmrA-like famil 70.0 30 0.00065 26.0 7.3 62 23-88 36-100 (233)
88 PLN02954 phosphoserine phospha 70.0 9.1 0.0002 28.7 4.4 37 19-55 88-124 (224)
89 cd01543 PBP1_XylR Ligand-bindi 69.5 47 0.001 25.2 11.1 154 14-180 11-180 (265)
90 COG0589 UspA Universal stress 69.4 20 0.00042 24.5 5.8 46 16-61 72-121 (154)
91 TIGR00338 serB phosphoserine p 69.2 16 0.00035 27.3 5.6 42 137-178 89-130 (219)
92 COG1778 Low specificity phosph 68.0 13 0.00028 27.1 4.4 34 145-178 47-80 (170)
93 TIGR01545 YfhB_g-proteo haloac 67.8 20 0.00043 27.1 5.8 41 21-61 101-144 (210)
94 PLN02770 haloacid dehalogenase 67.8 32 0.00069 26.5 7.1 64 19-83 112-179 (248)
95 cd06294 PBP1_ycjW_transcriptio 67.6 51 0.0011 24.9 14.1 159 13-180 16-192 (270)
96 TIGR03333 salvage_mtnX 2-hydro 67.4 14 0.00029 27.8 4.9 43 18-60 73-116 (214)
97 PLN02954 phosphoserine phospha 67.1 11 0.00024 28.2 4.4 43 136-178 87-131 (224)
98 PF01902 ATP_bind_4: ATP-bindi 67.1 35 0.00076 26.1 7.0 63 21-86 48-115 (218)
99 PRK08384 thiamine biosynthesis 66.9 68 0.0015 26.8 9.2 67 12-78 20-96 (381)
100 PLN03194 putative disease resi 66.8 52 0.0011 24.6 9.3 96 21-120 44-146 (187)
101 PRK09982 universal stress prot 66.5 28 0.00061 24.1 6.1 44 136-179 68-111 (142)
102 TIGR01525 ATPase-IB_hvy heavy 66.5 16 0.00035 31.9 5.7 46 134-179 385-431 (556)
103 TIGR01454 AHBA_synth_RP 3-amin 66.5 20 0.00044 26.5 5.6 20 133-153 153-172 (205)
104 KOG0207|consensus 66.4 31 0.00067 32.0 7.4 43 25-69 733-775 (951)
105 TIGR02137 HSK-PSP phosphoserin 66.3 8.8 0.00019 28.9 3.6 42 19-61 72-113 (203)
106 TIGR00282 metallophosphoestera 66.2 10 0.00023 29.9 4.1 57 42-99 19-75 (266)
107 PLN02347 GMP synthetase 65.8 62 0.0014 28.4 9.1 77 14-91 213-293 (536)
108 PRK15005 universal stress prot 65.5 25 0.00054 24.1 5.6 44 136-179 70-115 (144)
109 TIGR02990 ectoine_eutA ectoine 65.3 56 0.0012 25.3 7.9 57 40-99 106-162 (239)
110 KOG1615|consensus 65.2 14 0.0003 27.9 4.3 44 136-179 91-136 (227)
111 cd04185 GT_2_like_b Subfamily 65.1 44 0.00096 24.2 7.2 86 12-99 8-97 (202)
112 PF12692 Methyltransf_17: S-ad 65.0 27 0.00059 25.2 5.6 43 37-80 76-118 (160)
113 PRK08005 epimerase; Validated 64.9 60 0.0013 24.7 11.3 128 32-178 61-191 (210)
114 TIGR00268 conserved hypothetic 64.9 64 0.0014 25.0 9.3 74 20-93 2-76 (252)
115 cd06279 PBP1_LacI_like_3 Ligan 64.7 63 0.0014 24.9 9.0 73 13-91 16-88 (283)
116 TIGR01511 ATPase-IB1_Cu copper 64.5 54 0.0012 28.8 8.6 42 17-59 407-448 (562)
117 PRK11175 universal stress prot 64.4 21 0.00045 28.2 5.6 68 21-88 226-298 (305)
118 PRK11590 hypothetical protein; 64.3 29 0.00063 26.0 6.1 40 22-61 103-145 (211)
119 COG0220 Predicted S-adenosylme 64.2 15 0.00032 28.4 4.5 52 18-70 83-135 (227)
120 PRK10671 copA copper exporting 64.0 59 0.0013 30.1 9.0 64 22-90 657-720 (834)
121 COG2179 Predicted hydrolase of 63.5 56 0.0012 24.1 7.0 67 20-92 51-120 (175)
122 PRK15456 universal stress prot 63.4 29 0.00062 23.9 5.6 44 135-178 67-112 (142)
123 PRK13210 putative L-xylulose 5 63.3 69 0.0015 24.9 12.3 50 132-181 129-183 (284)
124 PRK14988 GMP/IMP nucleotidase; 63.2 48 0.001 25.1 7.2 66 17-83 95-164 (224)
125 PF10111 Glyco_tranf_2_2: Glyc 63.2 51 0.0011 25.9 7.6 68 30-100 33-107 (281)
126 PF13911 AhpC-TSA_2: AhpC/TSA 63.0 21 0.00046 23.8 4.7 40 20-61 2-44 (115)
127 TIGR01548 HAD-SF-IA-hyp1 haloa 62.9 58 0.0013 23.8 7.7 36 21-56 112-147 (197)
128 PF13911 AhpC-TSA_2: AhpC/TSA 62.8 15 0.00033 24.5 4.0 41 138-180 2-45 (115)
129 PTZ00445 p36-lilke protein; Pr 62.4 64 0.0014 24.7 7.5 25 152-178 181-205 (219)
130 TIGR01512 ATPase-IB2_Cd heavy 62.3 14 0.00029 32.2 4.5 46 134-179 363-409 (536)
131 PF13727 CoA_binding_3: CoA-bi 62.2 20 0.00043 25.4 4.8 45 42-88 130-174 (175)
132 TIGR03333 salvage_mtnX 2-hydro 62.2 20 0.00043 26.9 4.9 43 136-178 73-116 (214)
133 TIGR00273 iron-sulfur cluster- 62.1 48 0.0011 28.2 7.6 69 15-87 48-118 (432)
134 cd06271 PBP1_AglR_RafR_like Li 62.0 66 0.0014 24.2 15.5 158 13-180 15-190 (268)
135 PRK05395 3-dehydroquinate dehy 62.0 56 0.0012 23.4 9.9 71 28-102 40-113 (146)
136 PF01220 DHquinase_II: Dehydro 61.8 55 0.0012 23.3 9.6 71 28-102 39-112 (140)
137 PHA02588 cd deoxycytidylate de 61.1 53 0.0012 24.0 6.8 54 31-89 101-154 (168)
138 TIGR01681 HAD-SF-IIIC HAD-supe 60.9 51 0.0011 22.6 6.6 39 15-53 29-68 (128)
139 PRK13288 pyrophosphatase PpaX; 60.7 26 0.00055 26.1 5.3 17 134-151 161-177 (214)
140 COG1412 Uncharacterized protei 60.7 41 0.00089 23.8 5.8 48 38-95 83-130 (136)
141 COG0036 Rpe Pentose-5-phosphat 60.4 76 0.0016 24.4 11.6 128 33-178 65-197 (220)
142 PRK13223 phosphoglycolate phos 60.0 45 0.00097 26.2 6.7 74 17-91 103-183 (272)
143 cd00466 DHQase_II Dehydroquina 59.9 60 0.0013 23.1 9.9 71 28-102 38-111 (140)
144 TIGR01670 YrbI-phosphatas 3-de 59.9 27 0.00059 24.8 5.0 37 142-178 37-73 (154)
145 PF13277 YmdB: YmdB-like prote 59.8 11 0.00023 29.6 3.0 54 43-96 17-70 (253)
146 TIGR01545 YfhB_g-proteo haloac 59.7 29 0.00063 26.1 5.4 46 134-179 96-144 (210)
147 cd06267 PBP1_LacI_sugar_bindin 59.7 70 0.0015 23.8 13.7 71 14-91 12-87 (264)
148 COG0603 Predicted PP-loop supe 59.6 56 0.0012 25.2 6.8 85 34-118 6-102 (222)
149 TIGR01422 phosphonatase phosph 59.2 24 0.00051 27.1 5.0 36 19-54 103-138 (253)
150 PRK10660 tilS tRNA(Ile)-lysidi 59.2 58 0.0012 27.7 7.6 68 21-89 6-82 (436)
151 PRK08745 ribulose-phosphate 3- 59.2 80 0.0017 24.2 11.6 128 32-178 65-199 (223)
152 PRK01122 potassium-transportin 59.1 20 0.00043 32.4 4.9 45 136-180 448-492 (679)
153 PF00578 AhpC-TSA: AhpC/TSA fa 58.7 34 0.00074 22.6 5.2 42 15-56 43-84 (124)
154 TIGR02726 phenyl_P_delta pheny 58.7 42 0.00091 24.5 5.9 60 26-91 45-107 (169)
155 cd01988 Na_H_Antiporter_C The 58.5 48 0.001 22.0 6.0 46 134-179 54-102 (132)
156 TIGR01449 PGP_bact 2-phosphogl 58.4 38 0.00083 24.9 5.9 21 134-155 164-184 (213)
157 TIGR01931 cysJ sulfite reducta 58.3 1.2E+02 0.0025 27.0 9.6 100 53-155 60-179 (597)
158 PRK09004 FMN-binding protein M 58.1 64 0.0014 22.8 10.6 65 105-169 60-141 (146)
159 PRK11590 hypothetical protein; 57.8 28 0.00061 26.0 5.1 45 135-179 98-145 (211)
160 TIGR01497 kdpB K+-transporting 57.5 31 0.00066 31.2 5.9 46 134-179 447-492 (675)
161 TIGR01369 CPSaseII_lrg carbamo 57.3 1.4E+02 0.0031 28.5 10.5 119 22-156 31-169 (1050)
162 COG0546 Gph Predicted phosphat 57.2 26 0.00057 26.4 4.8 41 136-176 92-132 (220)
163 PRK15122 magnesium-transportin 56.9 1.1E+02 0.0024 28.7 9.6 38 18-55 553-590 (903)
164 PF01053 Cys_Met_Meta_PP: Cys/ 56.8 29 0.00063 29.0 5.3 68 19-87 107-176 (386)
165 TIGR00884 guaA_Cterm GMP synth 56.7 1.1E+02 0.0023 24.9 9.1 74 15-91 2-80 (311)
166 TIGR01662 HAD-SF-IIIA HAD-supe 56.6 59 0.0013 22.0 6.9 41 15-55 25-73 (132)
167 PF04900 Fcf1: Fcf1; InterPro 56.6 39 0.00084 22.2 5.0 45 39-93 51-96 (101)
168 TIGR02137 HSK-PSP phosphoserin 56.6 26 0.00056 26.3 4.6 42 137-179 72-113 (203)
169 PRK14010 potassium-transportin 56.5 23 0.00051 31.9 5.0 44 136-179 444-487 (673)
170 PRK09552 mtnX 2-hydroxy-3-keto 56.5 25 0.00054 26.4 4.6 34 19-52 78-111 (219)
171 PF08765 Mor: Mor transcriptio 56.4 57 0.0012 21.7 6.1 66 14-79 5-71 (108)
172 COG0529 CysC Adenylylsulfate k 56.3 37 0.0008 25.4 5.1 22 21-42 41-62 (197)
173 PRK05434 phosphoglyceromutase; 56.2 1.2E+02 0.0026 26.5 9.0 76 18-93 96-188 (507)
174 cd00128 XPG Xeroderma pigmento 56.2 29 0.00063 27.9 5.2 44 135-178 127-170 (316)
175 PRK10517 magnesium-transportin 56.1 1.1E+02 0.0024 28.7 9.4 38 18-55 553-590 (902)
176 PF02677 DUF208: Uncharacteriz 56.0 81 0.0018 23.3 11.9 54 34-87 3-60 (176)
177 PRK08238 hypothetical protein; 56.0 55 0.0012 28.2 7.0 65 18-83 75-142 (479)
178 cd01427 HAD_like Haloacid deha 55.9 27 0.00059 23.0 4.4 44 136-179 27-74 (139)
179 COG0220 Predicted S-adenosylme 55.8 23 0.0005 27.3 4.3 46 135-180 82-128 (227)
180 TIGR03351 PhnX-like phosphonat 55.6 53 0.0012 24.4 6.3 34 20-53 92-125 (220)
181 PHA02530 pseT polynucleotide k 55.2 23 0.00049 28.0 4.3 48 17-64 189-236 (300)
182 TIGR01509 HAD-SF-IA-v3 haloaci 55.1 73 0.0016 22.6 7.2 44 19-63 89-136 (183)
183 TIGR01261 hisB_Nterm histidino 54.4 54 0.0012 23.6 5.9 25 16-40 30-54 (161)
184 cd01545 PBP1_SalR Ligand-bindi 54.3 92 0.002 23.5 14.6 74 13-91 11-89 (270)
185 PRK11133 serB phosphoserine ph 54.1 35 0.00075 27.8 5.3 43 137-179 185-227 (322)
186 PF13419 HAD_2: Haloacid dehal 54.1 68 0.0015 22.2 6.4 44 139-182 83-130 (176)
187 cd08185 Fe-ADH1 Iron-containin 54.1 1.1E+02 0.0025 25.2 8.5 81 17-98 11-100 (380)
188 smart00475 53EXOc 5'-3' exonuc 54.0 60 0.0013 25.5 6.4 106 16-132 82-200 (259)
189 TIGR01489 DKMTPPase-SF 2,3-dik 54.0 20 0.00043 25.8 3.6 6 155-160 167-172 (188)
190 COG1778 Low specificity phosph 54.0 29 0.00063 25.3 4.2 53 26-84 46-98 (170)
191 cd03017 PRX_BCP Peroxiredoxin 53.7 50 0.0011 22.4 5.5 41 135-175 43-83 (140)
192 TIGR03190 benz_CoA_bzdN benzoy 53.5 29 0.00064 28.7 4.9 18 43-60 303-320 (377)
193 PF00535 Glycos_transf_2: Glyc 53.2 26 0.00056 23.9 4.0 82 13-99 10-96 (169)
194 PRK03669 mannosyl-3-phosphogly 53.1 31 0.00067 26.9 4.8 31 25-55 34-64 (271)
195 TIGR02417 fruct_sucro_rep D-fr 53.1 1.1E+02 0.0024 24.1 13.1 159 14-181 73-248 (327)
196 TIGR00542 hxl6Piso_put hexulos 53.0 1.1E+02 0.0023 23.9 11.9 51 131-181 128-183 (279)
197 TIGR01489 DKMTPPase-SF 2,3-dik 53.0 22 0.00047 25.6 3.7 41 138-178 77-121 (188)
198 TIGR01647 ATPase-IIIA_H plasma 53.0 1.2E+02 0.0027 27.7 9.1 37 20-56 447-483 (755)
199 TIGR01524 ATPase-IIIB_Mg magne 52.9 1.5E+02 0.0032 27.7 9.6 37 19-55 519-555 (867)
200 PRK08091 ribulose-phosphate 3- 52.8 1.1E+02 0.0023 23.7 12.5 129 32-177 71-206 (228)
201 PRK10490 sensor protein KdpD; 52.7 2E+02 0.0044 26.9 11.1 43 134-180 302-345 (895)
202 PRK12815 carB carbamoyl phosph 52.6 1.5E+02 0.0032 28.5 9.7 120 21-156 31-170 (1068)
203 TIGR02463 MPGP_rel mannosyl-3- 52.6 46 0.00099 24.9 5.5 29 27-55 28-56 (221)
204 cd03018 PRX_AhpE_like Peroxire 52.6 65 0.0014 22.2 6.0 45 16-60 47-91 (149)
205 COG0546 Gph Predicted phosphat 52.5 19 0.00042 27.2 3.4 39 19-57 93-131 (220)
206 cd08181 PPD-like 1,3-propanedi 52.4 1.3E+02 0.0028 24.6 8.6 80 18-98 12-100 (357)
207 PRK09484 3-deoxy-D-manno-octul 52.3 36 0.00078 24.9 4.8 31 147-177 62-92 (183)
208 PF00578 AhpC-TSA: AhpC/TSA fa 52.1 54 0.0012 21.6 5.3 39 135-173 45-83 (124)
209 PRK10703 DNA-binding transcrip 51.9 1.2E+02 0.0026 24.1 11.8 71 14-90 72-147 (341)
210 COG2205 KdpD Osmosensitive K+ 51.8 1.3E+02 0.0029 27.9 8.8 71 18-91 301-375 (890)
211 TIGR02463 MPGP_rel mannosyl-3- 51.8 40 0.00086 25.2 5.1 30 144-173 27-56 (221)
212 PRK11033 zntA zinc/cadmium/mer 51.6 83 0.0018 28.8 7.7 38 18-55 571-608 (741)
213 TIGR01522 ATPase-IIA2_Ca golgi 51.4 1.4E+02 0.0031 27.9 9.3 39 17-55 530-568 (884)
214 TIGR02726 phenyl_P_delta pheny 51.2 41 0.00089 24.5 4.8 33 145-177 46-78 (169)
215 cd00128 XPG Xeroderma pigmento 50.6 37 0.0008 27.3 4.9 43 18-60 128-170 (316)
216 COG0161 BioA Adenosylmethionin 50.4 1.6E+02 0.0036 25.2 11.6 148 21-176 67-254 (449)
217 PRK13225 phosphoglycolate phos 50.4 1.1E+02 0.0023 24.1 7.4 38 19-56 146-183 (273)
218 PF05822 UMPH-1: Pyrimidine 5' 50.4 14 0.0003 28.9 2.3 38 134-171 91-128 (246)
219 PF11987 IF-2: Translation-ini 50.3 62 0.0013 21.7 5.2 66 17-89 26-97 (108)
220 PRK13288 pyrophosphatase PpaX; 50.1 30 0.00066 25.7 4.2 41 136-176 85-125 (214)
221 PF13167 GTP-bdg_N: GTP-bindin 49.3 74 0.0016 20.9 6.6 23 161-183 47-69 (95)
222 cd06320 PBP1_allose_binding Pe 48.8 1.2E+02 0.0025 23.1 15.8 161 13-181 11-192 (275)
223 PRK13222 phosphoglycolate phos 48.8 1.1E+02 0.0023 22.7 7.0 35 20-54 98-132 (226)
224 cd03018 PRX_AhpE_like Peroxire 48.6 86 0.0019 21.5 6.1 43 135-177 48-90 (149)
225 cd00008 53EXOc 5'-3' exonuclea 48.6 1.2E+02 0.0027 23.3 9.2 122 15-147 82-215 (240)
226 cd08189 Fe-ADH5 Iron-containin 48.6 1.5E+02 0.0033 24.4 8.7 79 17-97 11-99 (374)
227 cd03017 PRX_BCP Peroxiredoxin 48.5 83 0.0018 21.3 6.3 44 16-59 42-85 (140)
228 PRK09552 mtnX 2-hydroxy-3-keto 48.4 37 0.00081 25.5 4.4 42 136-178 77-120 (219)
229 PF12683 DUF3798: Protein of u 48.3 69 0.0015 25.5 5.8 45 44-88 121-169 (275)
230 TIGR01428 HAD_type_II 2-haloal 48.3 79 0.0017 23.0 6.1 41 140-180 99-143 (198)
231 TIGR02253 CTE7 HAD superfamily 48.3 98 0.0021 22.9 6.7 8 116-123 158-165 (221)
232 PF02142 MGS: MGS-like domain 48.3 44 0.00095 21.6 4.2 41 45-85 52-93 (95)
233 COG0742 N6-adenine-specific me 48.2 86 0.0019 23.4 6.1 49 18-66 77-127 (187)
234 cd06310 PBP1_ABC_sugar_binding 48.1 1.2E+02 0.0026 23.0 14.7 158 13-180 11-192 (273)
235 KOG4498|consensus 48.0 40 0.00086 25.3 4.2 52 132-183 67-119 (197)
236 TIGR02571 ComEB ComE operon pr 48.0 1E+02 0.0022 22.1 6.9 53 31-89 87-139 (151)
237 PLN02781 Probable caffeoyl-CoA 47.8 1.1E+02 0.0024 23.4 7.0 63 20-83 106-173 (234)
238 PRK10826 2-deoxyglucose-6-phos 47.6 44 0.00094 25.0 4.7 40 137-176 96-135 (222)
239 COG4130 Predicted sugar epimer 47.5 59 0.0013 25.1 5.1 20 132-151 118-137 (272)
240 PF09494 Slx4: Slx4 endonuclea 47.4 48 0.001 19.9 4.0 36 137-174 26-61 (64)
241 cd06285 PBP1_LacI_like_7 Ligan 47.3 1.2E+02 0.0026 22.8 13.8 72 14-91 12-87 (265)
242 TIGR01664 DNA-3'-Pase DNA 3'-p 47.2 50 0.0011 23.9 4.7 47 9-55 36-94 (166)
243 PF01740 STAS: STAS domain; I 47.2 81 0.0018 20.8 5.7 37 17-55 66-102 (117)
244 PF15603 Imm45: Immunity prote 46.9 37 0.00081 21.7 3.5 70 83-153 10-80 (82)
245 PLN03243 haloacid dehalogenase 46.8 76 0.0016 24.8 6.0 36 19-54 113-148 (260)
246 PF10881 DUF2726: Protein of u 46.7 19 0.00041 24.7 2.3 53 47-99 51-118 (126)
247 PF01206 TusA: Sulfurtransfera 46.7 63 0.0014 19.3 5.5 44 136-179 12-59 (70)
248 cd06281 PBP1_LacI_like_5 Ligan 46.5 1.3E+02 0.0028 22.8 13.3 72 14-90 12-87 (269)
249 COG1692 Calcineurin-like phosp 46.2 31 0.00068 27.0 3.6 56 43-98 20-75 (266)
250 PRK14976 5'-3' exonuclease; Pr 46.2 82 0.0018 25.1 6.1 50 15-64 87-140 (281)
251 PRK00074 guaA GMP synthase; Re 46.1 1.5E+02 0.0033 25.7 8.3 76 14-91 200-279 (511)
252 PRK13600 putative ribosomal pr 46.0 79 0.0017 20.3 5.6 34 52-88 28-61 (84)
253 TIGR01511 ATPase-IB1_Cu copper 45.9 50 0.0011 29.0 5.3 44 134-178 406-449 (562)
254 PRK13703 conjugal pilus assemb 45.9 69 0.0015 25.1 5.6 45 42-88 135-179 (248)
255 PRK09860 putative alcohol dehy 45.8 1E+02 0.0022 25.6 6.9 87 12-99 11-106 (383)
256 cd03420 SirA_RHOD_Pry_redox Si 45.8 67 0.0015 19.4 5.7 43 20-62 13-59 (69)
257 COG1751 Uncharacterized conser 45.7 1.2E+02 0.0025 22.1 6.2 69 18-87 14-88 (186)
258 cd01542 PBP1_TreR_like Ligand- 45.3 1.3E+02 0.0028 22.5 13.9 71 13-90 11-86 (259)
259 PRK09456 ?-D-glucose-1-phospha 45.0 1E+02 0.0022 22.5 6.3 20 21-40 90-109 (199)
260 PRK00919 GMP synthase subunit 45.0 1.7E+02 0.0036 23.7 8.6 73 13-89 5-81 (307)
261 cd03423 SirA SirA (also known 45.0 69 0.0015 19.3 5.5 43 20-62 13-59 (69)
262 COG2077 Tpx Peroxiredoxin [Pos 44.9 70 0.0015 23.1 4.9 47 134-180 60-107 (158)
263 PRK04017 hypothetical protein; 44.9 1.1E+02 0.0023 21.5 6.6 32 17-48 6-40 (132)
264 PRK03669 mannosyl-3-phosphogly 44.9 54 0.0012 25.5 5.0 31 143-173 34-64 (271)
265 PRK01372 ddl D-alanine--D-alan 44.9 69 0.0015 25.2 5.7 43 16-60 21-63 (304)
266 KOG3167|consensus 44.8 37 0.0008 24.0 3.4 45 16-60 60-109 (153)
267 PF08444 Gly_acyl_tr_C: Aralky 44.8 48 0.001 21.6 3.8 45 11-55 32-76 (89)
268 KOG0207|consensus 44.8 41 0.00089 31.3 4.6 41 141-181 731-771 (951)
269 PRK15118 universal stress glob 44.8 99 0.0022 21.1 6.3 35 145-179 74-111 (144)
270 PRK10586 putative oxidoreducta 44.7 1.3E+02 0.0028 24.8 7.3 77 18-98 20-103 (362)
271 PRK11303 DNA-binding transcrip 44.6 1.5E+02 0.0033 23.2 13.9 158 14-181 74-248 (328)
272 TIGR03191 benz_CoA_bzdO benzoy 44.6 67 0.0015 27.3 5.7 50 41-91 349-400 (430)
273 PRK05294 carB carbamoyl phosph 44.5 2.2E+02 0.0048 27.3 9.6 39 22-60 32-89 (1066)
274 PRK09860 putative alcohol dehy 44.4 1.8E+02 0.004 24.1 8.8 41 19-59 47-94 (383)
275 TIGR02461 osmo_MPG_phos mannos 44.3 54 0.0012 24.9 4.8 29 26-54 26-54 (225)
276 PRK10014 DNA-binding transcrip 44.1 1.6E+02 0.0035 23.3 14.5 72 14-90 77-152 (342)
277 COG1225 Bcp Peroxiredoxin [Pos 43.7 94 0.002 22.5 5.6 38 136-173 51-88 (157)
278 TIGR01858 tag_bisphos_ald clas 43.7 1.7E+02 0.0036 23.4 14.9 158 14-180 58-232 (282)
279 cd06844 STAS Sulphate Transpor 43.6 61 0.0013 20.9 4.4 9 52-60 70-78 (100)
280 PRK12738 kbaY tagatose-bisphos 43.5 1.7E+02 0.0037 23.4 15.1 158 14-180 60-234 (286)
281 PF00834 Ribul_P_3_epim: Ribul 43.4 54 0.0012 24.7 4.5 129 32-178 60-194 (201)
282 PF01261 AP_endonuc_2: Xylose 43.3 1.1E+02 0.0023 22.2 6.2 70 10-79 104-184 (213)
283 cd01989 STK_N The N-terminal d 43.1 1.1E+02 0.0023 20.9 6.7 43 136-178 65-110 (146)
284 PF07476 MAAL_C: Methylasparta 43.0 63 0.0014 25.0 4.7 69 15-86 120-193 (248)
285 COG0656 ARA1 Aldo/keto reducta 43.0 1.7E+02 0.0037 23.4 8.4 70 18-89 86-190 (280)
286 cd00221 Vsr Very Short Patch R 43.0 60 0.0013 22.1 4.3 26 66-91 88-113 (115)
287 PRK14057 epimerase; Provisiona 42.9 1.6E+02 0.0036 23.1 14.0 135 33-177 79-220 (254)
288 cd02970 PRX_like2 Peroxiredoxi 42.9 84 0.0018 21.4 5.3 18 20-37 46-63 (149)
289 PF01171 ATP_bind_3: PP-loop f 42.8 80 0.0017 23.0 5.4 38 53-90 29-66 (182)
290 COG2179 Predicted hydrolase of 42.7 98 0.0021 22.8 5.5 36 143-178 56-91 (175)
291 PF02630 SCO1-SenC: SCO1/SenC; 42.6 1.3E+02 0.0028 21.8 7.3 65 15-87 70-140 (174)
292 TIGR02886 spore_II_AA anti-sig 42.6 93 0.002 20.1 5.2 11 73-83 82-92 (106)
293 PRK12686 carbamate kinase; Rev 42.5 1.3E+02 0.0028 24.5 6.8 75 28-104 39-126 (312)
294 smart00500 SFM Splicing Factor 42.4 62 0.0013 18.1 3.8 30 139-168 4-33 (44)
295 PRK10671 copA copper exporting 42.3 71 0.0015 29.5 5.9 40 140-179 657-696 (834)
296 PF08282 Hydrolase_3: haloacid 42.3 1.4E+02 0.003 22.1 9.9 75 19-94 20-107 (254)
297 TIGR01684 viral_ppase viral ph 42.3 1.4E+02 0.003 24.2 6.8 39 136-174 149-187 (301)
298 cd01537 PBP1_Repressors_Sugar_ 42.3 1.4E+02 0.003 22.1 13.4 72 14-91 12-88 (264)
299 TIGR01672 AphA HAD superfamily 42.3 1.6E+02 0.0035 22.8 8.9 96 73-175 53-160 (237)
300 PRK13602 putative ribosomal pr 42.1 89 0.0019 19.8 5.7 44 43-90 18-61 (82)
301 cd02970 PRX_like2 Peroxiredoxi 42.0 92 0.002 21.2 5.4 39 135-173 43-81 (149)
302 TIGR00715 precor6x_red precorr 42.0 1.3E+02 0.0027 23.7 6.5 45 43-89 55-99 (256)
303 PRK09437 bcp thioredoxin-depen 41.9 88 0.0019 21.8 5.3 41 136-176 51-91 (154)
304 TIGR01548 HAD-SF-IA-hyp1 haloa 41.9 47 0.001 24.3 4.1 34 143-176 116-149 (197)
305 PF08032 SpoU_sub_bind: RNA 2' 41.8 23 0.0005 21.5 2.0 45 47-94 11-55 (76)
306 cd01018 ZntC Metal binding pro 41.7 95 0.0021 24.2 5.9 44 135-178 203-247 (266)
307 PF00867 XPG_I: XPG I-region; 41.6 43 0.00094 21.6 3.4 32 147-178 2-33 (94)
308 TIGR01684 viral_ppase viral ph 41.6 1.2E+02 0.0026 24.6 6.3 46 18-63 149-198 (301)
309 cd06280 PBP1_LacI_like_4 Ligan 41.5 1.5E+02 0.0033 22.3 12.1 71 14-91 12-86 (263)
310 PRK08105 flavodoxin; Provision 41.5 1.3E+02 0.0027 21.3 11.7 66 105-170 62-144 (149)
311 cd07382 MPP_DR1281 Deinococcus 41.3 53 0.0011 25.8 4.3 42 136-178 128-173 (255)
312 PF08444 Gly_acyl_tr_C: Aralky 41.3 75 0.0016 20.7 4.3 46 129-174 32-77 (89)
313 TIGR02263 benz_CoA_red_C benzo 41.2 73 0.0016 26.5 5.4 47 41-88 309-357 (380)
314 COG2185 Sbm Methylmalonyl-CoA 41.2 1.3E+02 0.0028 21.5 6.0 69 11-87 27-96 (143)
315 TIGR03025 EPS_sugtrans exopoly 41.0 99 0.0022 26.1 6.3 47 42-90 177-223 (445)
316 PRK13209 L-xylulose 5-phosphat 41.0 1.7E+02 0.0037 22.7 11.6 50 132-181 134-188 (283)
317 smart00475 53EXOc 5'-3' exonuc 40.9 1.2E+02 0.0027 23.8 6.3 48 134-181 82-133 (259)
318 PRK10513 sugar phosphate phosp 40.9 1.7E+02 0.0036 22.5 9.2 30 26-55 31-60 (270)
319 PRK10530 pyridoxal phosphate ( 40.6 1.7E+02 0.0036 22.5 9.4 67 26-92 31-111 (272)
320 PF08282 Hydrolase_3: haloacid 40.5 1.2E+02 0.0027 22.4 6.3 37 136-173 19-55 (254)
321 cd01540 PBP1_arabinose_binding 40.4 1.7E+02 0.0036 22.4 9.5 73 14-91 12-88 (289)
322 cd03013 PRX5_like Peroxiredoxi 40.3 95 0.0021 22.0 5.3 38 135-172 50-88 (155)
323 COG0561 Cof Predicted hydrolas 40.2 78 0.0017 24.4 5.2 38 18-55 23-60 (264)
324 PRK09590 celB cellobiose phosp 39.9 1.1E+02 0.0024 20.3 8.1 65 15-87 16-80 (104)
325 cd02971 PRX_family Peroxiredox 39.9 1.1E+02 0.0023 20.7 5.4 36 135-170 42-77 (140)
326 COG2099 CobK Precorrin-6x redu 39.9 1.1E+02 0.0024 24.1 5.8 46 42-89 55-100 (257)
327 PTZ00222 60S ribosomal protein 39.7 84 0.0018 24.8 5.1 50 129-178 128-182 (263)
328 PF03602 Cons_hypoth95: Conser 39.5 1.5E+02 0.0033 21.8 6.6 48 18-65 76-126 (183)
329 COG2873 MET17 O-acetylhomoseri 39.5 1.4E+02 0.0029 25.2 6.4 66 21-87 116-182 (426)
330 TIGR00250 RNAse_H_YqgF RNAse H 39.5 1.3E+02 0.0028 20.9 7.3 20 41-60 36-55 (130)
331 TIGR03674 fen_arch flap struct 39.3 75 0.0016 26.0 5.1 41 137-177 131-171 (338)
332 PTZ00365 60S ribosomal protein 39.3 1.2E+02 0.0026 24.0 5.9 51 128-178 127-182 (266)
333 KOG0053|consensus 39.2 1.6E+02 0.0035 24.9 7.0 65 21-86 131-196 (409)
334 TIGR01486 HAD-SF-IIB-MPGP mann 39.2 87 0.0019 24.1 5.3 31 25-55 26-56 (256)
335 PRK10624 L-1,2-propanediol oxi 39.2 2.2E+02 0.0048 23.5 8.3 82 15-97 13-103 (382)
336 COG1167 ARO8 Transcriptional r 39.0 2.1E+02 0.0044 24.5 7.9 66 25-90 194-268 (459)
337 TIGR01686 FkbH FkbH-like domai 39.0 2E+02 0.0044 23.0 7.9 81 16-99 32-119 (320)
338 cd06295 PBP1_CelR Ligand bindi 38.9 1.7E+02 0.0037 22.2 9.8 71 14-90 23-95 (275)
339 PLN02589 caffeoyl-CoA O-methyl 38.9 1.2E+02 0.0027 23.6 6.0 56 27-83 124-185 (247)
340 cd00291 SirA_YedF_YeeD SirA, Y 38.9 84 0.0018 18.6 6.1 43 20-62 13-59 (69)
341 PF01297 TroA: Periplasmic sol 38.8 84 0.0018 24.2 5.2 44 135-178 185-229 (256)
342 PF02630 SCO1-SenC: SCO1/SenC; 38.7 1.3E+02 0.0029 21.7 6.0 44 135-178 72-121 (174)
343 PRK08248 O-acetylhomoserine am 38.5 1.3E+02 0.0028 25.5 6.6 65 23-88 120-185 (431)
344 PTZ00217 flap endonuclease-1; 38.5 70 0.0015 26.8 4.9 43 135-177 137-179 (393)
345 TIGR01370 cysRS possible cyste 38.5 1.9E+02 0.0041 23.5 7.2 75 15-89 188-271 (315)
346 cd01018 ZntC Metal binding pro 38.4 1.9E+02 0.0041 22.5 9.1 73 12-89 146-224 (266)
347 cd07043 STAS_anti-anti-sigma_f 38.2 1E+02 0.0022 19.3 5.1 12 41-52 55-66 (99)
348 COG2242 CobL Precorrin-6B meth 38.2 45 0.00097 24.9 3.3 42 18-62 69-111 (187)
349 COG2102 Predicted ATPases of P 38.1 1.9E+02 0.004 22.3 7.8 63 22-87 50-117 (223)
350 PRK03980 flap endonuclease-1; 38.1 76 0.0016 25.5 4.8 42 136-177 83-124 (292)
351 cd00614 CGS_like CGS_like: Cys 38.1 1.5E+02 0.0033 24.2 6.8 63 26-89 99-162 (369)
352 PRK05593 rplR 50S ribosomal pr 38.0 86 0.0019 21.5 4.5 40 45-85 78-117 (117)
353 PRK15454 ethanol dehydrogenase 38.0 1.5E+02 0.0033 24.7 6.9 82 15-97 32-122 (395)
354 TIGR00377 ant_ant_sig anti-ant 38.0 91 0.002 20.1 4.6 11 73-83 86-96 (108)
355 TIGR02432 lysidine_TilS_N tRNA 38.0 1.2E+02 0.0026 21.9 5.7 38 53-90 29-66 (189)
356 cd08182 HEPD Hydroxyethylphosp 38.0 2.3E+02 0.0049 23.3 8.5 79 18-97 9-93 (367)
357 cd06313 PBP1_ABC_sugar_binding 37.9 1.8E+02 0.004 22.2 9.8 73 14-91 12-89 (272)
358 cd08192 Fe-ADH7 Iron-containin 37.9 1.7E+02 0.0036 24.1 7.0 81 18-99 10-99 (370)
359 PRK07810 O-succinylhomoserine 37.8 1.8E+02 0.0038 24.3 7.2 64 23-87 126-190 (403)
360 PF02739 5_3_exonuc_N: 5'-3' e 37.8 1.1E+02 0.0023 22.4 5.2 47 16-62 84-134 (169)
361 PRK14976 5'-3' exonuclease; Pr 37.8 1.5E+02 0.0033 23.6 6.5 49 133-181 87-139 (281)
362 PRK10976 putative hydrolase; P 37.7 1E+02 0.0022 23.7 5.5 29 27-55 31-59 (266)
363 PRK11340 phosphodiesterase Yae 37.7 1.3E+02 0.0028 23.5 6.1 67 20-87 69-147 (271)
364 PRK10530 pyridoxal phosphate ( 37.6 1.2E+02 0.0027 23.2 6.0 30 144-173 31-60 (272)
365 TIGR01517 ATPase-IIB_Ca plasma 37.6 3.2E+02 0.0069 25.9 9.4 37 19-55 583-619 (941)
366 TIGR02739 TraF type-F conjugat 37.5 1.1E+02 0.0023 24.2 5.4 44 43-88 143-186 (256)
367 COG1358 RPL8A Ribosomal protei 37.5 1.3E+02 0.0029 20.5 5.6 45 134-178 28-77 (116)
368 PF07085 DRTGG: DRTGG domain; 37.5 1.2E+02 0.0025 19.8 5.6 62 20-89 31-92 (105)
369 PRK01158 phosphoglycolate phos 37.5 1.3E+02 0.0029 22.3 6.0 30 26-55 31-60 (230)
370 PF04914 DltD_C: DltD C-termin 37.5 1.4E+02 0.0031 20.8 5.9 48 43-90 39-97 (130)
371 PRK08610 fructose-bisphosphate 37.5 2.2E+02 0.0047 22.9 14.6 158 16-180 63-235 (286)
372 KOG3128|consensus 37.3 98 0.0021 24.6 5.1 38 135-172 140-177 (298)
373 TIGR02461 osmo_MPG_phos mannos 37.3 86 0.0019 23.8 4.9 30 144-173 26-55 (225)
374 PF12689 Acid_PPase: Acid Phos 37.1 1.7E+02 0.0036 21.5 6.5 64 19-84 49-123 (169)
375 cd08190 HOT Hydroxyacid-oxoaci 37.1 2.5E+02 0.0055 23.6 8.9 78 18-96 9-95 (414)
376 PLN02940 riboflavin kinase 37.1 1.3E+02 0.0028 25.0 6.3 46 18-63 96-146 (382)
377 PRK01158 phosphoglycolate phos 37.0 1.2E+02 0.0026 22.6 5.7 30 144-173 31-60 (230)
378 cd02067 B12-binding B12 bindin 36.9 97 0.0021 20.6 4.7 44 18-61 65-110 (119)
379 TIGR01485 SPP_plant-cyano sucr 36.9 86 0.0019 24.0 4.9 38 16-53 22-59 (249)
380 cd01574 PBP1_LacI Ligand-bindi 36.8 1.8E+02 0.0039 21.8 13.4 72 14-91 12-88 (264)
381 cd03013 PRX5_like Peroxiredoxi 36.8 1.2E+02 0.0026 21.5 5.4 38 17-54 50-88 (155)
382 PRK12702 mannosyl-3-phosphogly 36.4 1.4E+02 0.0031 24.1 6.1 34 22-55 25-58 (302)
383 PRK12702 mannosyl-3-phosphogly 36.4 1.1E+02 0.0025 24.7 5.5 34 141-174 26-59 (302)
384 TIGR01487 SPP-like sucrose-pho 36.3 99 0.0021 22.9 5.1 31 25-55 28-58 (215)
385 PRK00109 Holliday junction res 36.2 1.5E+02 0.0033 20.8 7.5 20 41-60 42-61 (138)
386 PRK10909 rsmD 16S rRNA m(2)G96 36.2 1.8E+02 0.0038 21.8 6.4 58 18-80 87-145 (199)
387 TIGR01307 pgm_bpd_ind 2,3-bisp 36.2 3E+02 0.0064 24.1 8.7 75 18-92 92-183 (501)
388 PRK15126 thiamin pyrimidine py 36.2 2E+02 0.0044 22.2 9.0 29 27-55 31-59 (272)
389 PRK06769 hypothetical protein; 36.1 1.3E+02 0.0028 21.7 5.5 68 16-83 29-108 (173)
390 TIGR02252 DREG-2 REG-2-like, H 36.1 1.6E+02 0.0034 21.4 6.1 22 39-61 108-130 (203)
391 PF08423 Rad51: Rad51; InterP 36.0 1E+02 0.0022 24.1 5.2 50 133-182 117-189 (256)
392 TIGR00060 L18_bact ribosomal p 36.0 1E+02 0.0022 21.0 4.6 40 45-85 75-114 (114)
393 cd06270 PBP1_GalS_like Ligand 36.0 1.9E+02 0.0041 21.8 14.1 71 14-91 12-87 (268)
394 COG2131 ComEB Deoxycytidylate 35.9 1.7E+02 0.0038 21.4 7.4 54 33-89 99-152 (164)
395 PRK10976 putative hydrolase; P 35.8 1.3E+02 0.0029 23.0 5.9 29 145-173 31-59 (266)
396 TIGR03023 WcaJ_sugtrans Undeca 35.7 1.4E+02 0.0031 25.2 6.4 47 42-90 180-226 (451)
397 TIGR01662 HAD-SF-IIIA HAD-supe 35.7 1.4E+02 0.003 20.1 6.2 12 148-159 40-51 (132)
398 TIGR00099 Cof-subfamily Cof su 35.7 2E+02 0.0043 21.9 9.4 70 25-94 26-108 (256)
399 cd06314 PBP1_tmGBP Periplasmic 35.6 2E+02 0.0042 21.8 14.6 160 13-181 10-189 (271)
400 TIGR01454 AHBA_synth_RP 3-amin 35.6 87 0.0019 23.0 4.6 37 138-174 80-116 (205)
401 COG4087 Soluble P-type ATPase 35.6 1.6E+02 0.0035 20.9 6.3 69 16-88 31-99 (152)
402 COG0552 FtsY Signal recognitio 35.5 2.5E+02 0.0055 23.1 8.8 69 19-89 155-228 (340)
403 TIGR02260 benz_CoA_red_B benzo 35.5 1.2E+02 0.0025 25.7 5.8 48 42-90 339-389 (413)
404 cd02971 PRX_family Peroxiredox 35.5 1.4E+02 0.003 20.1 6.1 43 17-59 42-85 (140)
405 PRK03980 flap endonuclease-1; 35.4 79 0.0017 25.3 4.6 44 19-63 84-127 (292)
406 cd06273 PBP1_GntR_like_1 This 35.4 1.9E+02 0.0042 21.7 9.5 70 14-90 12-86 (268)
407 COG1358 RPL8A Ribosomal protei 35.3 1.5E+02 0.0032 20.3 5.9 44 45-90 35-78 (116)
408 COG0589 UspA Universal stress 35.3 1.4E+02 0.003 20.1 5.9 46 134-179 72-121 (154)
409 PF02310 B12-binding: B12 bind 35.3 1.3E+02 0.0029 19.8 8.5 79 19-98 16-97 (121)
410 cd06306 PBP1_TorT-like TorT-li 35.3 2E+02 0.0043 21.9 14.8 154 13-178 11-191 (268)
411 TIGR01487 SPP-like sucrose-pho 35.2 1.1E+02 0.0025 22.6 5.3 30 144-173 29-58 (215)
412 cd01541 PBP1_AraR Ligand-bindi 35.1 2E+02 0.0043 21.8 9.2 78 12-91 10-92 (273)
413 PF00867 XPG_I: XPG I-region; 35.1 62 0.0013 20.9 3.3 32 29-60 2-33 (94)
414 PRK15126 thiamin pyrimidine py 35.0 1.4E+02 0.003 23.1 5.9 29 145-173 31-59 (272)
415 CHL00139 rpl18 ribosomal prote 34.9 1E+02 0.0022 20.9 4.3 41 44-85 69-109 (109)
416 COG3473 Maleate cis-trans isom 34.9 2.1E+02 0.0046 22.0 7.5 64 43-112 107-170 (238)
417 PRK10624 L-1,2-propanediol oxi 34.8 1.9E+02 0.0041 24.0 6.9 55 35-89 10-65 (382)
418 PRK08247 cystathionine gamma-s 34.7 2.6E+02 0.0055 22.9 8.2 64 24-88 108-172 (366)
419 cd08171 GlyDH-like2 Glycerol d 34.7 2.5E+02 0.0054 22.8 8.5 41 19-59 10-55 (345)
420 TIGR01494 ATPase_P-type ATPase 34.7 2.5E+02 0.0054 24.1 7.8 35 20-54 352-386 (499)
421 PTZ00217 flap endonuclease-1; 34.7 81 0.0018 26.5 4.7 46 18-64 138-183 (393)
422 cd08176 LPO Lactadehyde:propan 34.6 1.8E+02 0.0038 24.1 6.7 87 11-98 7-102 (377)
423 TIGR02009 PGMB-YQAB-SF beta-ph 34.5 99 0.0021 22.0 4.7 16 40-56 92-107 (185)
424 PRK07709 fructose-bisphosphate 34.5 2.4E+02 0.0052 22.6 14.5 141 34-180 82-235 (285)
425 cd00008 53EXOc 5'-3' exonuclea 34.5 1.9E+02 0.0042 22.3 6.5 51 131-181 80-134 (240)
426 PRK13226 phosphoglycolate phos 34.4 2E+02 0.0044 21.6 7.6 33 22-54 102-134 (229)
427 PRK13222 phosphoglycolate phos 34.4 1E+02 0.0022 22.9 4.9 39 137-175 97-135 (226)
428 TIGR03674 fen_arch flap struct 34.3 91 0.002 25.5 4.9 40 20-59 132-171 (338)
429 PF13167 GTP-bdg_N: GTP-bindin 34.2 1.4E+02 0.003 19.7 9.1 50 17-66 7-70 (95)
430 PRK10124 putative UDP-glucose 34.2 1.5E+02 0.0032 25.4 6.3 48 43-92 193-240 (463)
431 PF00465 Fe-ADH: Iron-containi 34.0 1.9E+02 0.0042 23.6 6.8 41 19-60 10-56 (366)
432 PRK00192 mannosyl-3-phosphogly 33.9 1.3E+02 0.0029 23.3 5.6 33 23-55 29-61 (273)
433 PF13466 STAS_2: STAS domain 33.8 1.1E+02 0.0024 18.5 4.8 34 18-53 45-78 (80)
434 cd08189 Fe-ADH5 Iron-containin 33.8 2.2E+02 0.0048 23.4 7.1 55 35-89 6-61 (374)
435 PRK10355 xylF D-xylose transpo 33.8 2.5E+02 0.0054 22.5 9.9 73 13-90 37-114 (330)
436 PLN02770 haloacid dehalogenase 33.7 60 0.0013 25.0 3.6 38 137-174 112-149 (248)
437 PRK09195 gatY tagatose-bisphos 33.7 2.5E+02 0.0054 22.5 15.0 157 15-180 61-234 (284)
438 PRK14571 D-alanyl-alanine synt 33.6 1.9E+02 0.0042 22.8 6.6 66 17-86 18-83 (299)
439 cd01391 Periplasmic_Binding_Pr 33.6 1.9E+02 0.0041 21.1 14.1 159 14-180 13-191 (269)
440 PTZ00032 60S ribosomal protein 33.5 97 0.0021 23.5 4.4 39 45-85 172-211 (211)
441 TIGR01449 PGP_bact 2-phosphogl 33.5 89 0.0019 22.9 4.4 35 140-174 92-126 (213)
442 TIGR02638 lactal_redase lactal 33.4 1.9E+02 0.0042 23.8 6.8 87 11-98 8-103 (379)
443 PF08799 PRP4: pre-mRNA proces 33.3 35 0.00077 17.4 1.5 26 142-167 2-27 (30)
444 cd06423 CESA_like CESA_like is 33.3 1.5E+02 0.0033 19.9 6.5 83 13-99 9-96 (180)
445 KOG4498|consensus 33.1 42 0.00092 25.1 2.4 57 7-64 60-118 (197)
446 PRK00724 formate dehydrogenase 33.1 1.2E+02 0.0026 23.8 5.2 41 140-180 212-252 (263)
447 PRK08134 O-acetylhomoserine am 33.1 1.8E+02 0.0039 24.7 6.5 63 25-88 122-185 (433)
448 smart00484 XPGI Xeroderma pigm 33.0 75 0.0016 19.7 3.2 32 147-178 2-33 (73)
449 cd07393 MPP_DR1119 Deinococcus 32.8 2.2E+02 0.0048 21.6 14.8 148 20-177 28-199 (232)
450 PRK02090 phosphoadenosine phos 32.8 2.3E+02 0.005 21.8 8.5 70 18-89 27-100 (241)
451 cd00019 AP2Ec AP endonuclease 32.6 2.4E+02 0.0051 21.9 11.0 50 132-181 119-177 (279)
452 PRK11033 zntA zinc/cadmium/mer 32.6 97 0.0021 28.3 5.2 39 135-173 570-608 (741)
453 PRK13223 phosphoglycolate phos 32.5 88 0.0019 24.5 4.4 39 136-174 104-142 (272)
454 COG0626 MetC Cystathionine bet 32.4 1.8E+02 0.0039 24.5 6.3 62 21-83 117-180 (396)
455 COG0561 Cof Predicted hydrolas 32.3 1.4E+02 0.003 22.9 5.5 38 137-174 24-61 (264)
456 PF01248 Ribosomal_L7Ae: Ribos 32.2 1.4E+02 0.003 19.0 5.6 39 49-89 27-65 (95)
457 PRK10513 sugar phosphate phosp 32.2 1.3E+02 0.0027 23.2 5.3 30 144-173 31-60 (270)
458 TIGR01681 HAD-SF-IIIC HAD-supe 32.2 1.2E+02 0.0025 20.7 4.5 38 134-171 30-68 (128)
459 COG4359 Uncharacterized conser 32.2 1.4E+02 0.0031 22.5 5.0 45 137-181 77-127 (220)
460 PRK06176 cystathionine gamma-s 32.2 1.7E+02 0.0038 24.2 6.3 65 23-88 105-170 (380)
461 PRK06683 hypothetical protein; 32.1 1.4E+02 0.0029 19.0 5.7 37 50-89 24-60 (82)
462 cd08194 Fe-ADH6 Iron-containin 32.1 2.4E+02 0.0053 23.2 7.1 81 18-99 9-98 (375)
463 PRK08883 ribulose-phosphate 3- 32.0 2.3E+02 0.005 21.6 10.7 126 33-177 62-194 (220)
464 COG1408 Predicted phosphohydro 31.9 1.3E+02 0.0027 24.1 5.2 51 33-85 75-137 (284)
465 PHA02594 nadV nicotinamide pho 31.9 3.4E+02 0.0074 23.5 8.7 58 22-82 283-359 (470)
466 PF05822 UMPH-1: Pyrimidine 5' 31.9 39 0.00084 26.4 2.2 34 19-52 94-127 (246)
467 cd03334 Fab1_TCP TCP-1 like do 31.8 1.1E+02 0.0023 24.0 4.8 40 137-176 118-157 (261)
468 TIGR02638 lactal_redase lactal 31.8 3E+02 0.0064 22.8 8.7 41 19-59 45-92 (379)
469 PF07611 DUF1574: Protein of u 31.8 3E+02 0.0064 22.8 9.3 77 6-98 244-320 (345)
470 PRK12815 carB carbamoyl phosph 31.7 4.8E+02 0.01 25.2 9.7 22 134-155 690-711 (1068)
471 TIGR00099 Cof-subfamily Cof su 31.7 1.5E+02 0.0032 22.6 5.5 31 143-173 26-56 (256)
472 PLN02476 O-methyltransferase 31.7 2.7E+02 0.0058 22.2 7.0 60 23-83 159-223 (278)
473 PF13728 TraF: F plasmid trans 31.6 1.3E+02 0.0029 22.8 5.1 42 44-87 114-155 (215)
474 PRK05967 cystathionine beta-ly 31.5 2.3E+02 0.005 23.7 6.9 63 24-87 121-184 (395)
475 COG5310 Homospermidine synthas 31.5 1.1E+02 0.0023 25.4 4.6 13 74-86 198-210 (481)
476 TIGR00632 vsr DNA mismatch end 31.4 86 0.0019 21.5 3.6 25 67-91 92-116 (117)
477 PRK09437 bcp thioredoxin-depen 31.3 1.8E+02 0.0039 20.2 6.1 43 17-59 50-92 (154)
478 cd03012 TlpA_like_DipZ_like Tl 31.3 1.1E+02 0.0024 20.5 4.3 15 72-86 74-88 (126)
479 smart00513 SAP Putative DNA-bi 31.2 82 0.0018 16.2 2.9 28 20-50 6-33 (35)
480 cd08190 HOT Hydroxyacid-oxoaci 31.2 2.3E+02 0.005 23.8 6.9 51 40-90 9-59 (414)
481 TIGR00129 fdhD_narQ formate de 31.1 1.5E+02 0.0031 23.0 5.3 41 140-180 183-223 (237)
482 cd01017 AdcA Metal binding pro 31.1 2E+02 0.0043 22.6 6.2 43 136-178 207-250 (282)
483 PRK05994 O-acetylhomoserine am 31.1 2.4E+02 0.0052 23.8 7.0 67 24-91 120-187 (427)
484 PRK14569 D-alanyl-alanine synt 31.0 2E+02 0.0043 22.8 6.2 66 17-86 21-86 (296)
485 TIGR01325 O_suc_HS_sulf O-succ 31.0 2.3E+02 0.005 23.3 6.8 66 24-90 111-177 (380)
486 PRK05234 mgsA methylglyoxal sy 31.0 1.9E+02 0.0042 20.4 6.2 16 20-35 19-36 (142)
487 TIGR03234 OH-pyruv-isom hydrox 31.0 2.4E+02 0.0052 21.5 12.0 139 36-183 10-180 (254)
488 PRK00299 sulfur transfer prote 30.8 1.4E+02 0.003 18.7 5.8 43 20-62 23-69 (81)
489 TIGR01485 SPP_plant-cyano sucr 30.7 1.3E+02 0.0028 23.0 5.0 39 134-172 22-60 (249)
490 cd08551 Fe-ADH iron-containing 30.7 3E+02 0.0065 22.5 8.2 81 18-99 9-98 (370)
491 cd01453 vWA_transcription_fact 30.6 2E+02 0.0044 21.0 5.8 39 139-177 126-165 (183)
492 TIGR01486 HAD-SF-IIB-MPGP mann 30.5 1.6E+02 0.0035 22.6 5.5 31 143-173 26-56 (256)
493 cd06442 DPM1_like DPM1_like re 30.4 2.2E+02 0.0047 20.7 8.7 84 13-99 9-96 (224)
494 PF08423 Rad51: Rad51; InterP 30.4 1.8E+02 0.004 22.6 5.8 25 14-38 116-140 (256)
495 PRK00192 mannosyl-3-phosphogly 30.4 1.8E+02 0.0039 22.6 5.8 31 143-173 31-61 (273)
496 TIGR01482 SPP-subfamily Sucros 30.3 1.6E+02 0.0035 21.7 5.4 45 134-178 16-61 (225)
497 PRK13225 phosphoglycolate phos 30.3 1.3E+02 0.0028 23.7 5.0 40 137-176 146-185 (273)
498 PRK00724 formate dehydrogenase 30.2 1.4E+02 0.003 23.5 5.1 36 26-61 216-251 (263)
499 PRK08133 O-succinylhomoserine 30.2 2.7E+02 0.0058 23.1 7.1 66 23-89 117-183 (390)
500 cd06322 PBP1_ABC_sugar_binding 30.1 2.4E+02 0.0052 21.2 14.8 74 12-90 10-88 (267)
No 1
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=99.95 E-value=1.1e-27 Score=175.53 Aligned_cols=116 Identities=29% Similarity=0.472 Sum_probs=104.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 7 ~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
..|++|++|+++||.+|+++|+++|++|+|+.|++.++|++|+++++|++||+|++|++++++||+++++.|++.||.++
T Consensus 42 ~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~ 121 (165)
T PF00875_consen 42 RIGPRRRRFLLESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGIKVH 121 (165)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTSEEE
T ss_pred cCcchHHHHHHHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcceEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCceeecccccccccCCCCchhHHHHHHHhhhccc
Q psy17626 87 EFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGT 123 (184)
Q Consensus 87 ~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~~~ 123 (184)
.+++++|++|++++++.+ ++|++||+|++.+.+...
T Consensus 122 ~~~~~~L~~~~~i~~~~~-~~~~vFtpf~k~~~~~~~ 157 (165)
T PF00875_consen 122 TFDDHTLVPPDDIPKKDG-EPYKVFTPFRKKWEKQLL 157 (165)
T ss_dssp EE--SSSS-HHHCHSTTS-SSHSSHHHHHHHHHCHCS
T ss_pred EECCcEEEeccccccCCC-CCcccHHHHHHHHHhcCC
Confidence 999999999999988754 899999999999998765
No 2
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=99.89 E-value=1.1e-22 Score=169.48 Aligned_cols=114 Identities=22% Similarity=0.321 Sum_probs=108.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeE
Q psy17626 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 6 ~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
+..|++|++|+++||.+|+++|+++|++|+|+.|++.++|++|+++++|++||+|++|++++++||+.|++.|.+.||.+
T Consensus 49 ~~~~~~r~~Fl~esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~ 128 (429)
T TIGR02765 49 PKTGPARGKFLLESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVRTVFLHQEVGSEEKSVERLLQQALARLGIHV 128 (429)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHHHhcCceE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCceeecccccccccCCCCchhHHHHHHHhhh
Q psy17626 86 KEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120 (184)
Q Consensus 86 ~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~ 120 (184)
+.+++++|++|++|++..+ ++|++|++|++.+..
T Consensus 129 ~~~~~~~l~~p~~v~~~~~-~~~~~ft~f~~~~~~ 162 (429)
T TIGR02765 129 EQHWGSTLYHEDDLPFDLE-DLPDVFTQFRKQVEA 162 (429)
T ss_pred EEecCCEeECHHhcCCCCC-CCCCCchHHHHHHHh
Confidence 9999999999999998754 799999999998764
No 3
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=99.89 E-value=2e-22 Score=169.49 Aligned_cols=116 Identities=24% Similarity=0.453 Sum_probs=109.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeE
Q psy17626 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 6 ~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
+..|++|++||++||.+|+++|+++|++|+|+.|++.++|++|+++++|++||+|.+|++++++||++|++.|.+.||.+
T Consensus 43 ~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~ 122 (471)
T TIGR03556 43 DDMAPARVAYLIGCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAKAVYWNLDVEPYGRKRDRAVAAALKEAGIAV 122 (471)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHCCCEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCceeecccccccccCCCCchhHHHHHHHhhhcc
Q psy17626 86 KEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122 (184)
Q Consensus 86 ~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~~ 122 (184)
+.+++++|++|+.+++++ +++|++|++|++.+....
T Consensus 123 ~~~~~~~l~~p~~i~~~~-~~~y~~ft~f~k~~~~~~ 158 (471)
T TIGR03556 123 VTLWDQLLHSPDEILTGS-GNPYTVYTPFWKNWSSLP 158 (471)
T ss_pred EEeCCcEEECccccccCC-CCCCcchhHHHHHHHhcc
Confidence 999999999999998875 479999999999987654
No 4
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=99.88 E-value=9.4e-22 Score=165.83 Aligned_cols=115 Identities=21% Similarity=0.290 Sum_probs=107.1
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhcCCeEEEEE-CChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeE
Q psy17626 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ-GSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 7 ~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~-g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
..+++|.+||++||.+|+++|+++|++|+|+. |++.++|++|+++++|++||+|++|++++++||++|+++|.+.||.+
T Consensus 40 ~~~~~~~~fl~~sL~~L~~~L~~~G~~L~v~~~g~~~~~l~~l~~~~~i~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 119 (475)
T TIGR02766 40 YPGRVSRWWLKQSLAHLDQSLRSLGTCLVTIRSTDTVAALLDCVRSTGATRLFFNHLYDPVSLVRDHRAKEVLTAQGISV 119 (475)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCCEE
Confidence 45778888999999999999999999999985 89999999999999999999999999999999999999999999999
Q ss_pred EEecCceeecccccccccCCCCchhHHHHHHHhhhcc
Q psy17626 86 KEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122 (184)
Q Consensus 86 ~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~~ 122 (184)
+.+++++|++|+++.+++ +++|++|++|++.+....
T Consensus 120 ~~~~~~~l~~p~~i~~~~-~~~~~~ft~f~~~~~~~~ 155 (475)
T TIGR02766 120 QSFNADLLYEPWEVYDEL-GRPFTMFAAFWERCLSMP 155 (475)
T ss_pred EEecCCEEEChhhhcccC-CCCCCeecHHHHHHHhcc
Confidence 999999999999999865 479999999999976543
No 5
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=99.87 E-value=8.2e-22 Score=162.43 Aligned_cols=116 Identities=23% Similarity=0.335 Sum_probs=111.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 7 ~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
++|+++.+|+.+||++|+++|+++|++|+|..|+|..++++++++.++++||+|.+|+++++.||..++..|.+.||.++
T Consensus 44 ~~~~~~~~Fl~~sL~~L~~~L~~~gi~L~v~~~~~~~~l~~~~~~~~~~~v~~n~~~~~~~~~rD~al~~~l~~~gi~~~ 123 (461)
T COG0415 44 HASPRHAAFLLQSLQALQQSLAELGIPLLVREGDPEQVLPELAKQLAATTVFWNRDYEEWERQRDAALAQPLTEVGIAVH 123 (461)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhCcceEEeeeeechhHHHHHHHHHHHHHhcCceEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCceeecccccccccCCCCchhHHHHHHHhhhccc
Q psy17626 87 EFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGT 123 (184)
Q Consensus 87 ~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~~~ 123 (184)
.|+|++|++|+++.+..+ ++|++||+|++.+.+...
T Consensus 124 ~~~d~~l~~p~~~~t~~~-~~y~vfT~F~k~~~~~~~ 159 (461)
T COG0415 124 SFWDALLHEPGEVRTGSG-EPYKVFTPFYKAWRDRLR 159 (461)
T ss_pred EeccccccCHhhccCCCC-CCccccchHHHHHHHhcc
Confidence 999999999999999764 799999999999987633
No 6
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=99.85 E-value=9e-21 Score=159.53 Aligned_cols=113 Identities=16% Similarity=0.203 Sum_probs=105.5
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEEC----ChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHh
Q psy17626 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQG----SPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAE 80 (184)
Q Consensus 5 ~~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g----~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~ 80 (184)
.+..|++|++||++||.+|+++|+++|++|+|++| +|.++|++|+++++|++||+|++|++++++||++|++.|.
T Consensus 44 ~~~~~~~r~~Fl~esL~~L~~~L~~~g~~L~v~~g~~~g~~~~vl~~l~~~~~i~~v~~~~~~~~~~~~rd~~v~~~l~- 122 (472)
T PRK10674 44 AHDMAPRQAAFINAQLNALQIALAEKGIPLLFHEVDDFAASVEWLKQFCQQHQVTHLFYNYQYEVNERQRDAAVERALR- 122 (472)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCcCCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHcC-
Confidence 34579999999999999999999999999999975 7999999999999999999999999999999999999996
Q ss_pred CCCeEEEecCceeecccccccccCCCCchhHHHHHHHhhh
Q psy17626 81 NNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120 (184)
Q Consensus 81 ~gi~~~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~ 120 (184)
||.++.+++++|++|+.+.++++ ++|++|++|++.+.+
T Consensus 123 -~i~~~~~~~~~l~~~~~i~~~~~-~~y~~ft~f~~~~~~ 160 (472)
T PRK10674 123 -NVVCQGFDDSVLLPPGSVMTGNH-EMYKVFTPFKNAFLK 160 (472)
T ss_pred -CCEEEEecCceEeCccccccCCC-CCCCcccHHHHHHHH
Confidence 89999999999999999988755 799999999999865
No 7
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.80 E-value=3.4e-19 Score=149.60 Aligned_cols=109 Identities=8% Similarity=0.050 Sum_probs=101.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 7 ~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
..|++|++||++||.+|+++|+++|++|+|+.|+|.++|++|+++++|++||+|++|++++++||+.|++.|++ +|.++
T Consensus 67 ~~~~~r~~Fl~esL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~i~~V~~~~~~~~~~~~rd~~v~~~l~~-~i~~~ 145 (454)
T TIGR00591 67 AATRRHYFFMLGGLDEVANECERLIIPFHLLDGPPKELLPYFVDLHAAAAVVTDFSPLRQPEQWDEAVGKLLPK-DVPFQ 145 (454)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCCceEEeecChHHHHHHHHHHcCCCEEEEecccCcHHHHHHHHHHHHhcC-CCcEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999965 89999
Q ss_pred EecCceeecccccccccCCCCchhHHHHHHHhh
Q psy17626 87 EFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119 (184)
Q Consensus 87 ~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~ 119 (184)
.+++++|++|+.+.++ .+|.+|++|.+...
T Consensus 146 ~~~~~~l~p~~~~~~~---~~y~~ft~~~k~~~ 175 (454)
T TIGR00591 146 QVDAHNVVPCWAASKK---LEYAARTIRGKIRK 175 (454)
T ss_pred EECCceEeeCcccCCc---eeeeeecHHHHHHH
Confidence 9999999999998764 58999998877643
No 8
>KOG0133|consensus
Probab=99.56 E-value=5.9e-15 Score=123.35 Aligned_cols=121 Identities=36% Similarity=0.649 Sum_probs=114.8
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 4 ~~~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
|....|..|++||.|+|.+|+++|+++|++|.+++|.|+.+|+++.+.++++.|.++.+++|+.+.||..++..+.+.|+
T Consensus 45 ~~~~~g~~~~~~l~qsL~~ld~sl~~l~~~L~v~~~~p~~vl~~~~~~~~~~~l~~~~~~~p~~~vrD~~~~~~a~~l~i 124 (531)
T KOG0133|consen 45 GSSNVGRNRWRFLLQSLEDLDQSLRELNSRLFVFRGHPIAVLSRLLEQVGVQKLKFEYDMEPDGKVRDATIKSLATELGL 124 (531)
T ss_pred hccccchhHHHHHHHHHHHHHHHHHHhCCceEEEeCCchHHHhhhhhccceeEEEEEEeccCccccccHHHHHHHHHhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCceeecccccccccCCCCchhHHHHHHHhhhcccc
Q psy17626 84 TVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTM 124 (184)
Q Consensus 84 ~~~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~~~~ 124 (184)
.+.....++++.|+.+..++++++|.+|+.|+..+.++..+
T Consensus 125 ~v~s~~s~~~~~~~~~i~~n~~k~pls~~~~~~~~~~~~~~ 165 (531)
T KOG0133|consen 125 SVVSPVSHTLYLPDKIIEANGGKPPLSYKTFRGVCQSMSAP 165 (531)
T ss_pred hhcccCchhhhcHHHHHHhcCCCCccccccccccccccccc
Confidence 99999999999999999998889999999999988777554
No 9
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=99.26 E-value=1.1e-11 Score=90.79 Aligned_cols=60 Identities=37% Similarity=0.659 Sum_probs=53.5
Q ss_pred ccCcchhHHHHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcccccCC
Q psy17626 125 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184 (184)
Q Consensus 125 ~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~~~~~ 184 (184)
..+.++..|+.+||.+|+++|+++|++|+++.|++.++|.+|+++++|++||+|++|+++
T Consensus 42 ~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~ 101 (165)
T PF00875_consen 42 RIGPRRRRFLLESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGATAVYFNEEYTPY 101 (165)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTESEEEEE---SHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcCeeEeccccCHH
Confidence 568899999999999999999999999999999999999999999999999999999863
No 10
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=99.09 E-value=6.7e-11 Score=98.95 Aligned_cols=61 Identities=30% Similarity=0.498 Sum_probs=58.1
Q ss_pred cccCcchhHHHHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcccccCC
Q psy17626 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184 (184)
Q Consensus 124 ~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~~~~~ 184 (184)
+..++++..|+.+||.+|+++|+++|++|+++.|++.++|.+|+++++|++||+|++|+++
T Consensus 49 ~~~~~~r~~Fl~esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~~V~~~~~~~~~ 109 (429)
T TIGR02765 49 PKTGPARGKFLLESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVRTVFLHQEVGSE 109 (429)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCCEEEEeccCCHH
Confidence 4478899999999999999999999999999999999999999999999999999999874
No 11
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=99.06 E-value=1.3e-10 Score=98.28 Aligned_cols=64 Identities=27% Similarity=0.615 Sum_probs=59.0
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcccccCC
Q psy17626 121 IGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184 (184)
Q Consensus 121 ~~~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~~~~~ 184 (184)
+..+..+.++..|+.+||.+|+++|+++|++|+++.|++.++|.+|+++++|++||+|++|+++
T Consensus 40 ~~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~~V~~~~~~~~~ 103 (471)
T TIGR03556 40 LQADDMAPARVAYLIGCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAKAVYWNLDVEPY 103 (471)
T ss_pred hccccCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCCEEEEecccCHH
Confidence 3344577888999999999999999999999999999999999999999999999999999874
No 12
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=99.01 E-value=2.5e-10 Score=96.67 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=59.6
Q ss_pred HHHHhhhccccccCcchhHHHHHHHHHHHHHHHhCCCeEEEEe-CChhHHHHHHHHHcCcCeEEEcccccCC
Q psy17626 114 YLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ-GSPISIFQKLKRELNFTKLCFEQDCEAY 184 (184)
Q Consensus 114 F~~~~~~~~~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~-g~~~~~l~~l~~~~~~~~v~~n~~~~~~ 184 (184)
|...+..+.....+.++..|+.+||.+|+++|+++|++|+|+. |++.++|.+|+++++|++||+|++|+++
T Consensus 29 yi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~G~~L~v~~~g~~~~~l~~l~~~~~i~~v~~~~~~~~~ 100 (475)
T TIGR02766 29 FVWAPEEEGQYYPGRVSRWWLKQSLAHLDQSLRSLGTCLVTIRSTDTVAALLDCVRSTGATRLFFNHLYDPV 100 (475)
T ss_pred EEechHHhccccccHHHHHHHHHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHHHcCCCEEEEecccCHH
Confidence 3334444443335567778999999999999999999999985 8999999999999999999999999874
No 13
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=98.98 E-value=4.4e-10 Score=93.42 Aligned_cols=72 Identities=24% Similarity=0.469 Sum_probs=65.4
Q ss_pred HHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcccccCC
Q psy17626 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184 (184)
Q Consensus 111 ~~~F~~~~~~~~~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~~~~~ 184 (184)
.+.|...++++. .+++++..|+.+||++|+++|+++|++|++..|++.+++++++++.++++||+|++|+++
T Consensus 32 ~~vfi~~~~~~~--~~~~~~~~Fl~~sL~~L~~~L~~~gi~L~v~~~~~~~~l~~~~~~~~~~~v~~n~~~~~~ 103 (461)
T COG0415 32 IAVFILDPEQLG--HASPRHAAFLLQSLQALQQSLAELGIPLLVREGDPEQVLPELAKQLAATTVFWNRDYEEW 103 (461)
T ss_pred EEEEEechhhcc--ccCHHHHHHHHHHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhCcceEEeeeeechh
Confidence 455666667776 788899999999999999999999999999999999999999999999999999999863
No 14
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=98.96 E-value=5.2e-10 Score=94.61 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=57.7
Q ss_pred cccccCcchhHHHHHHHHHHHHHHHhCCCeEEEEeC----ChhHHHHHHHHHcCcCeEEEcccccCC
Q psy17626 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQG----SPISIFQKLKRELNFTKLCFEQDCEAY 184 (184)
Q Consensus 122 ~~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g----~~~~~l~~l~~~~~~~~v~~n~~~~~~ 184 (184)
..+..+.++..|+.+||.+|+++|+++|++|+|+.| ++.++|++|+++++|++||+|++|+++
T Consensus 43 ~~~~~~~~r~~Fl~esL~~L~~~L~~~g~~L~v~~g~~~g~~~~vl~~l~~~~~i~~v~~~~~~~~~ 109 (472)
T PRK10674 43 AAHDMAPRQAAFINAQLNALQIALAEKGIPLLFHEVDDFAASVEWLKQFCQQHQVTHLFYNYQYEVN 109 (472)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCcCCHHHHHHHHHHHcCCCEEEEecccCHH
Confidence 344578899999999999999999999999999975 699999999999999999999999874
No 15
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.88 E-value=4.1e-09 Score=88.83 Aligned_cols=58 Identities=9% Similarity=0.098 Sum_probs=55.9
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcccccCC
Q psy17626 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184 (184)
Q Consensus 127 ~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~~~~~ 184 (184)
+.++..|+.+||.+|+++|+++|++|+|+.|++.++|.+|+++++|++||+|++|+++
T Consensus 69 ~~~r~~Fl~esL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~i~~V~~~~~~~~~ 126 (454)
T TIGR00591 69 TRRHYFFMLGGLDEVANECERLIIPFHLLDGPPKELLPYFVDLHAAAAVVTDFSPLRQ 126 (454)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCceEEeecChHHHHHHHHHHcCCCEEEEecccCcH
Confidence 7788999999999999999999999999999999999999999999999999999874
No 16
>KOG0133|consensus
Probab=98.45 E-value=1.8e-07 Score=78.99 Aligned_cols=77 Identities=32% Similarity=0.607 Sum_probs=72.0
Q ss_pred chhHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcccccCC
Q psy17626 108 PLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184 (184)
Q Consensus 108 ~~v~~~F~~~~~~~~~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~~~~~ 184 (184)
..++.+|+-.++.++....|..+..|+.++|++|+++|+++|++|.+++|.|.++|++..++.+++.+.++.+++|+
T Consensus 31 ~~~~~v~i~d~~~~~~~~~g~~~~~~l~qsL~~ld~sl~~l~~~L~v~~~~p~~vl~~~~~~~~~~~l~~~~~~~p~ 107 (531)
T KOG0133|consen 31 EPVRPVFILDPEEAGSSNVGRNRWRFLLQSLEDLDQSLRELNSRLFVFRGHPIAVLSRLLEQVGVQKLKFEYDMEPD 107 (531)
T ss_pred CCceeEEEeCHhHhhccccchhHHHHHHHHHHHHHHHHHHhCCceEEEeCCchHHHhhhhhccceeEEEEEEeccCc
Confidence 36677788889999999999999999999999999999999999999999999999999999999999999999875
No 17
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=97.41 E-value=0.0021 Score=49.36 Aligned_cols=109 Identities=6% Similarity=0.095 Sum_probs=65.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCCeEEEEECC-------hHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhC
Q psy17626 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGS-------PISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAEN 81 (184)
Q Consensus 9 ~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~-------~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~ 81 (184)
-..|..+++.|++...+.|++.|.....+.-+ -.+.|.+++++++++.|.+-+ |.+..-.+.+++++++.
T Consensus 40 HkqKl~l~~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~---P~d~~l~~~l~~~~~~~ 116 (224)
T PF04244_consen 40 HKQKLVLFFSAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVME---PGDYRLEQRLESLAQQL 116 (224)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE-----S-HHHHHHHHH----S
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEEC---CCCHHHHHHHHhhhccc
Confidence 35678899999999999999999998887533 367899999999999998876 77778888899999999
Q ss_pred CCeEEEecCc-eeecccccccccCCCCchhHHHHHHHhhh
Q psy17626 82 NITVKEFVSH-TLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120 (184)
Q Consensus 82 gi~~~~~~~~-~L~~p~~i~~~~~~~~~~v~~~F~~~~~~ 120 (184)
||++..+.+. -|..+.++..=-++........|++...+
T Consensus 117 ~i~~~~~~~~~Fl~s~~~f~~~~~~~k~~~Me~FYR~mRk 156 (224)
T PF04244_consen 117 GIPLEVLEDPHFLTSREEFAEWFEGRKRLRMEYFYREMRK 156 (224)
T ss_dssp SS-EEEE--TTSSS-HHHHHHHHTT-SS--HHHHHHHHHH
T ss_pred CCceEEeCCCCccCCHHHHHHHHccCCceeHHHHHHHHHH
Confidence 9999888665 45555544332122233444667766554
No 18
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=94.93 E-value=0.58 Score=39.01 Aligned_cols=107 Identities=9% Similarity=0.141 Sum_probs=80.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCeEEEEECCh---HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 10 YNRFRFLLECLADLDRQLKSHGGQLFIVQGSP---ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 10 ~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~---~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
..+.-++..+++.+.+.|+..|.......-++ ...|.+.++.+..++|+..+ |.+..-..++++.--..||++.
T Consensus 45 kqKl~lv~aAMR~Fad~LraeG~~V~Y~~~~~~~~~~~l~~~l~~~~~d~~~~~~---p~~~~l~~~m~~L~~~~g~~i~ 121 (505)
T COG3046 45 KQKLVLVFAAMRHFADELRAEGLKVRYERADDNSFGGELRRALEAYPGDRVQVQE---PGDHRLEARMKSLSMALGIEIT 121 (505)
T ss_pred hhhhHHHHHHHHHHHHHHhhCCceeEEEEcCCcccchHHHHHHHhcCCCeEEEec---CcchhHHHHHHhhhhhcCceeE
Confidence 34566889999999999999999876665444 56789999999999999987 4444555556655556799998
Q ss_pred EecCc-eeecccccccccCCCCchhHHHHHHHhh
Q psy17626 87 EFVSH-TLWDPEVVIQTNGNVPPLTYKMYLHTVS 119 (184)
Q Consensus 87 ~~~~~-~L~~p~~i~~~~~~~~~~v~~~F~~~~~ 119 (184)
...+. .|.++.++..-.++..+-....|++...
T Consensus 122 ~~~~~~Fl~s~a~f~~w~~~~k~~lme~FYr~mR 155 (505)
T COG3046 122 EVENPHFLCSRAEFDAWAGDRKPLLMESFYRRMR 155 (505)
T ss_pred EecCcceecCHHHhhhhhccCcchhhHHHHHHHH
Confidence 88665 8888888876555556666666766654
No 19
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=92.17 E-value=0.76 Score=37.85 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHcCcceEEEeecccchhHH-HHHHHHHHHHhCCCeEEEe
Q psy17626 39 GSPISIFQKLKRELNFTKLCFEQDCEALWHK-RDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 39 g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~-rd~~v~~~l~~~gi~~~~~ 88 (184)
|+|.++|.+.+++++++.|+...+|.|.... .-+-++..|.+.|+.+..-
T Consensus 99 G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (357)
T PRK12652 99 GDYAEVLIAYAEEHGIDRVVLDPEYNPGGTAPMLQPLERELARAGITYEEA 149 (357)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCCCCCCcccchHHHHHHhcCCceecC
Confidence 8999999999999999999999999987533 3456677788888887654
No 20
>PRK09982 universal stress protein UspD; Provisional
Probab=91.72 E-value=3.3 Score=28.93 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHH-HHHHHHHHhCCCeEEE
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD-KKVKKWCAENNITVKE 87 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd-~~v~~~l~~~gi~~~~ 87 (184)
.|.++.+.+...+....+..|+|.+.|.+.+++.+++-|++-.. .....+- -.-.+.++...+++..
T Consensus 69 ~l~~~~~~~~~~~~~~~v~~G~p~~~I~~~A~~~~aDLIVmG~~--~~~~~~~~~va~~V~~~s~~pVLv 136 (142)
T PRK09982 69 KLYKLTKNIQWPKTKLRIERGEMPETLLEIMQKEQCDLLVCGHH--HSFINRLMPAYRGMINKMSADLLI 136 (142)
T ss_pred HHHHHHHhcCCCcceEEEEecCHHHHHHHHHHHcCCCEEEEeCC--hhHHHHHHHHHHHHHhcCCCCEEE
Confidence 34555554444456778889999999999999999999999754 2222221 2334455666777654
No 21
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=91.22 E-value=7 Score=31.72 Aligned_cols=161 Identities=15% Similarity=0.084 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECCh----HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~~----~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
-|..+-+..+.+.+++.|-.+.+...+. .....+.....+++.|+..- .. .+....+.+.+.++++..++
T Consensus 71 ~~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~-~~-----~~~~~~~~l~~~~~P~V~i~ 144 (333)
T COG1609 71 PFFAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG-ER-----PNDSLLELLAAAGIPVVVID 144 (333)
T ss_pred chHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec-CC-----CCHHHHHHHHhcCCCEEEEe
Confidence 5889999999999999999999886543 23455666778899988875 11 11233445566799988877
Q ss_pred Ccee-ecccccccccCCCCchhHHHHHHH-hhhccccccCcchhHHHHHHHHHHHHHHHhCCCeE---EEEeCC-----h
Q psy17626 90 SHTL-WDPEVVIQTNGNVPPLTYKMYLHT-VSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQL---FIVQGS-----P 159 (184)
Q Consensus 90 ~~~L-~~p~~i~~~~~~~~~~v~~~F~~~-~~~~~~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L---~v~~g~-----~ 159 (184)
...- .....|..++-...+..-..+... ..+...-. ++.......+.++-..+.|++.|++. .+..|+ .
T Consensus 145 ~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~-~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~~~~~g 223 (333)
T COG1609 145 RSPPGLGVPSVGIDNFAGAYLATEHLIELGHRRIAFIG-GPLDSSASRERLEGYRAALREAGLPINPEWIVEGDFSEESG 223 (333)
T ss_pred CCCccCCCCEEEEChHHHHHHHHHHHHHCCCceEEEEe-CCCccccHhHHHHHHHHHHHHCCCCCCcceEEecCCChHHH
Confidence 6433 112223332110011111111111 01111111 11133344666888889999999873 555433 2
Q ss_pred hHHHHHHHHHcC--cCeEEEcccc
Q psy17626 160 ISIFQKLKRELN--FTKLCFEQDC 181 (184)
Q Consensus 160 ~~~l~~l~~~~~--~~~v~~n~~~ 181 (184)
.+.+.++..... .|+||+..|.
T Consensus 224 ~~~~~~ll~~~~~~ptAif~~nD~ 247 (333)
T COG1609 224 YEAAERLLARGEPRPTAIFCANDL 247 (333)
T ss_pred HHHHHHHHhcCCCCCcEEEEcCcH
Confidence 345556665443 8999987663
No 22
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=90.54 E-value=2.3 Score=31.42 Aligned_cols=68 Identities=19% Similarity=0.117 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecc------------cc--hhHHHHHHHHHHHHhCC
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC------------EA--LWHKRDKKVKKWCAENN 82 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~------------~~--~~~~rd~~v~~~l~~~g 82 (184)
.....++-+.|++.|.++.|..+.+...+..+++..+++.++.++-. ++ .....-..+++++++.|
T Consensus 89 ~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~~~~ 168 (202)
T TIGR01490 89 YPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLAEEQ 168 (202)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHHHcC
Confidence 34556666678888999999999999999999999999988766211 01 11222345777777777
Q ss_pred Ce
Q psy17626 83 IT 84 (184)
Q Consensus 83 i~ 84 (184)
+.
T Consensus 169 ~~ 170 (202)
T TIGR01490 169 ID 170 (202)
T ss_pred CC
Confidence 63
No 23
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=89.32 E-value=8.6 Score=29.80 Aligned_cols=163 Identities=17% Similarity=0.136 Sum_probs=86.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 8 ~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
-|+.|.-|..+-+..+.+.+++.|-.+.+...+..+ ......+++.|+.... ... +..++ .+.+.++++..
T Consensus 14 ~~~~~~~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~---~~l~~~~vdgiIi~~~-~~~----~~~~~-~l~~~~iPvV~ 84 (269)
T cd06287 14 GGPSRLGFMMEVAAAAAESALERGLALCLVPPHEAD---SPLDALDIDGAILVEP-MAD----DPQVA-RLRQRGIPVVS 84 (269)
T ss_pred CCcccCccHHHHHHHHHHHHHHCCCEEEEEeCCCch---hhhhccCcCeEEEecC-CCC----CHHHH-HHHHcCCCEEE
Confidence 367788899999999999999999998887554211 2445778998887531 111 12233 34567899888
Q ss_pred ecCcee--ecccccccccCCCCchhHHHHHHH-hhhccccccCcchhHHHHHHHHHHHHHHHhCCCeEEEE--eC--C--
Q psy17626 88 FVSHTL--WDPEVVIQTNGNVPPLTYKMYLHT-VSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV--QG--S-- 158 (184)
Q Consensus 88 ~~~~~L--~~p~~i~~~~~~~~~~v~~~F~~~-~~~~~~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~--~g--~-- 158 (184)
++...- .....+..++....+.....+... ..+..--. +........+......+.+++.|.+..+. .+ +
T Consensus 85 i~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~-~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~ 163 (269)
T cd06287 85 IGRPPGDRTDVPYVDLQSAATARMLLEHLRAQGARQIALIV-GSARRNSYLEAEAAYRAFAAEHGMPPVVLRVDEAGGEE 163 (269)
T ss_pred eCCCCCCCCCCCeEeeCcHHHHHHHHHHHHHcCCCcEEEEe-CCcccccHHHHHHHHHHHHHHcCCCcceeEecCCCChH
Confidence 765321 011122222110011111111111 11111111 11111223345667778888888754322 21 1
Q ss_pred -hhHHHHHHHHHc-CcCeEEEccc
Q psy17626 159 -PISIFQKLKREL-NFTKLCFEQD 180 (184)
Q Consensus 159 -~~~~l~~l~~~~-~~~~v~~n~~ 180 (184)
..+.+.++.++. ..++|++..|
T Consensus 164 ~~~~~~~~~l~~~~~~~ai~~~~d 187 (269)
T cd06287 164 AGYAACAQLLAQHPDLDALCVPVD 187 (269)
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCc
Confidence 124555665543 5899998755
No 24
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=88.97 E-value=2.4 Score=32.23 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccc-----------h--hHHHHHHHHHHHHhCCCe
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA-----------L--WHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~-----------~--~~~rd~~v~~~l~~~gi~ 84 (184)
..+|-+.|++.|....|+.|.+......+++..+++.++.|.-... . ...-...+++++++.|+.
T Consensus 82 a~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~~g~~ 159 (212)
T COG0560 82 AEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAELGIP 159 (212)
T ss_pred HHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHHcCCC
Confidence 6788999999999999999999999999999999998888753211 1 123456788888888887
No 25
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=88.94 E-value=9.8 Score=29.93 Aligned_cols=155 Identities=15% Similarity=0.154 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEC--ChHH-HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQG--SPIS-IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~-~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
..|..+-+..+.+.+++.|-.+.+... ++.. ...+.+.+.+++.|+.. ..... +..+....+. |+++..++
T Consensus 13 npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~-s~~~~----~~~l~~~~~~-~iPvV~~~ 86 (279)
T PF00532_consen 13 NPFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILA-SSEND----DEELRRLIKS-GIPVVLID 86 (279)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEE-SSSCT----CHHHHHHHHT-TSEEEEES
T ss_pred CcHHHHHHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEe-cccCC----hHHHHHHHHc-CCCEEEEE
Confidence 347888999999999999999887652 2221 23345567899999887 22222 3345555555 99998877
Q ss_pred Cceeec--ccccccccCCCCchhHHHHHHHhhh---ccccc-----cCcchhHHHHHHHHHHHHHHHhCCCe---EEEEe
Q psy17626 90 SHTLWD--PEVVIQTNGNVPPLTYKMYLHTVSC---IGTMH-----IGYNRFRFLLECLADLDRQLKSHGGQ---LFIVQ 156 (184)
Q Consensus 90 ~~~L~~--p~~i~~~~~~~~~~v~~~F~~~~~~---~~~~~-----~~~~r~~fl~~~L~~L~~~L~~~g~~---L~v~~ 156 (184)
...--+ -..+..+ -+...+...+. .+-.+ .++.......+.++-..+.|++.|++ ..+..
T Consensus 87 ~~~~~~~~~~~V~~D-------~~~a~~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~ 159 (279)
T PF00532_consen 87 RYIDNPEGVPSVYID-------NYEAGYEATEYLIKKGHRRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFE 159 (279)
T ss_dssp S-SCTTCTSCEEEEE-------HHHHHHHHHHHHHHTTCCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEE
T ss_pred eccCCcccCCEEEEc-------chHHHHHHHHHHHhcccCCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCcccccc
Confidence 642211 1112121 12222222211 12111 12233345667788889999999984 45555
Q ss_pred CCh-----hHHHHHHHHHc-CcCeEEEccc
Q psy17626 157 GSP-----ISIFQKLKREL-NFTKLCFEQD 180 (184)
Q Consensus 157 g~~-----~~~l~~l~~~~-~~~~v~~n~~ 180 (184)
++. .+.+.++.+.. .+++|++..|
T Consensus 160 ~~~~~~~g~~~~~~ll~~~p~idai~~~nd 189 (279)
T PF00532_consen 160 GDFDYESGYEAARELLESHPDIDAIFCAND 189 (279)
T ss_dssp SSSSHHHHHHHHHHHHHTSTT-SEEEESSH
T ss_pred cCCCHHHHHHHHHHHHhhCCCCEEEEEeCH
Confidence 543 24566776666 6779998765
No 26
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=88.90 E-value=1.9 Score=35.55 Aligned_cols=61 Identities=15% Similarity=0.118 Sum_probs=44.4
Q ss_pred HHHhcCC--eEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 26 QLKSHGG--QLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 26 ~L~~~g~--~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
+|+++|+ ..+++.+.|.....+..-+.++.+|+.--|..|..+.--.++.+.|++.||+|.
T Consensus 37 ~l~~lgi~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~D~d~~G~~~~~~~~~~L~~aGi~V~ 99 (360)
T PRK14719 37 SLKNLKINANFITVSNTPVFQIADDLIAENISEVILLTDFDRAGRVYAKNIMEEFQSRGIKVN 99 (360)
T ss_pred HHHHcCCCCcEEEEeCCchHHHHHHHHHcCCCEEEEEECCCCCCCccchHHHHHHHHCCCEEE
Confidence 6778887 466677888776666666678888888778777544444566778888898874
No 27
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=87.63 E-value=5.2 Score=26.19 Aligned_cols=68 Identities=19% Similarity=0.097 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCeEEEE---ECChHHH--HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCc
Q psy17626 20 LADLDRQLKSHGGQLFIV---QGSPISI--FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSH 91 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~---~g~~~~~--l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~ 91 (184)
...+.+.+++.|..+.+. .|..... |+..+++ ++.|++--++......+ .+++.+++.|+++....+.
T Consensus 12 ~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~--aD~VIv~t~~vsH~~~~--~vk~~akk~~ip~~~~~~~ 84 (97)
T PF10087_consen 12 ERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKK--ADLVIVFTDYVSHNAMW--KVKKAAKKYGIPIIYSRSR 84 (97)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCC--CCEEEEEeCCcChHHHH--HHHHHHHHcCCcEEEECCC
Confidence 456778888899999888 3333333 7776654 77788888876555444 5677888899998876544
No 28
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=86.77 E-value=2.7 Score=37.85 Aligned_cols=63 Identities=14% Similarity=0.109 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 22 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
+.-+.|+++|++++++.||....-.+++++.+|++++.+- .|..+.. .|++ +++.|-.+-.+.
T Consensus 544 ~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~Ael--lPedK~~--~V~~-l~~~g~~VamVG 606 (713)
T COG2217 544 EAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRAEL--LPEDKAE--IVRE-LQAEGRKVAMVG 606 (713)
T ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhheccC--CcHHHHH--HHHH-HHhcCCEEEEEe
Confidence 4446678899999999999999999999999999999864 4554443 3333 345554444443
No 29
>PRK15005 universal stress protein F; Provisional
Probab=86.21 E-value=2.7 Score=29.10 Aligned_cols=45 Identities=13% Similarity=0.247 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcC--CeEEEEECChHHHHHHHHHHcCcceEEEeec
Q psy17626 18 ECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62 (184)
Q Consensus 18 ~sL~~L~~~L~~~g--~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~ 62 (184)
+.|.++.+.+...| ...++..|+|.+.|.+.+++.+++-|+.-..
T Consensus 70 ~~l~~~~~~~~~~~~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~ 116 (144)
T PRK15005 70 SQLEEIIKKFKLPTDRVHVHVEEGSPKDRILELAKKIPADMIIIASH 116 (144)
T ss_pred HHHHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 34444444444334 3578889999999999999999999998754
No 30
>PRK15456 universal stress protein UspG; Provisional
Probab=86.11 E-value=2.3 Score=29.54 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCC--eEEEEECChHHHHHHHHHHcCcceEEEeec
Q psy17626 18 ECLADLDRQLKSHGG--QLFIVQGSPISIFQKLKRELNFTKLCFEQD 62 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~ 62 (184)
+.|.++.+.+...|. ..++..|+|.+.|.+++++++++-|++-..
T Consensus 68 ~~l~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~ 114 (142)
T PRK15456 68 ERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSR 114 (142)
T ss_pred HHHHHHHHHhCCCCcceEEEEcCCChHHHHHHHHhhcCCCEEEEcCC
Confidence 345555555543333 567788999999999999999999988653
No 31
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=85.76 E-value=10 Score=26.87 Aligned_cols=71 Identities=10% Similarity=0.011 Sum_probs=50.7
Q ss_pred HhcCCeEEEEECChHHHHHHHHHHc--CcceEEEeec-ccchhHHHHHHHHHHHHhCCCeEEEecCceeecccccccc
Q psy17626 28 KSHGGQLFIVQGSPISIFQKLKREL--NFTKLCFEQD-CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQT 102 (184)
Q Consensus 28 ~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~v~~~~~-~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~ 102 (184)
+++|..+.+++.+.+..|-+...+. +++.|+.|.. |+.+.. .++.++...++++.+++-...+..+.++..
T Consensus 38 ~~~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSi----Al~DAl~~~~~P~vEVHiSNi~aRE~fR~~ 111 (141)
T TIGR01088 38 AQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSV----ALRDALAAVSLPVVEVHLSNVHAREEFRHH 111 (141)
T ss_pred HHcCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhhhHH----HHHHHHHcCCCCEEEEEcCCcccccccccc
Confidence 3458999999998887777766654 4678888853 333333 445556677899999988888888776553
No 32
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=85.20 E-value=11 Score=26.84 Aligned_cols=71 Identities=10% Similarity=0.030 Sum_probs=49.9
Q ss_pred HhcCCeEEEEECChHHHHHHHHHHc--CcceEEEeec-ccchhHHHHHHHHHHHHhCCCeEEEecCceeecccccccc
Q psy17626 28 KSHGGQLFIVQGSPISIFQKLKREL--NFTKLCFEQD-CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQT 102 (184)
Q Consensus 28 ~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~v~~~~~-~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~ 102 (184)
+++|..+.+++.+.+..|-+...+. +++.|..|.. |+.+.. .++.++...++++.+++-...+..+.++..
T Consensus 40 ~~~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSi----Al~DAl~~~~~P~VEVHiSNi~aRE~fR~~ 113 (146)
T PRK13015 40 EALGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTHTSV----AIRDALAALELPVIEVHISNVHAREAFRHH 113 (146)
T ss_pred HHcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhhhHH----HHHHHHHcCCCCEEEEEcCCcccccccccc
Confidence 3458999999988887766666553 5678998853 333333 445556677899999988888877776553
No 33
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=85.12 E-value=7.2 Score=29.95 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEE--CC---hHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQ--GS---PISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~--g~---~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
..+..++.+-+.+|+||+... |+ -.+.+...+++.+++.|++-.-...+-+.| +++.|++.|++..
T Consensus 45 ~~~~~~~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~s~~qr~~---~e~vc~~~gl~~~ 115 (222)
T TIGR00289 45 PNLHLTDLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIESNYQKSR---IDKVCRELGLKSI 115 (222)
T ss_pred CCHHHHHHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECccccHHHHHH---HHHHHHHcCCEEe
Confidence 356677777788999998775 32 334455556677999999986555454444 4566677788765
No 34
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=83.44 E-value=15 Score=26.81 Aligned_cols=134 Identities=13% Similarity=0.143 Sum_probs=78.3
Q ss_pred HHHHHcCcceEEEeecccchhH---HHHHHHHHHHHhCCCeEEEecCceeecccccccccCCCC------chhHHHHHHH
Q psy17626 47 KLKRELNFTKLCFEQDCEALWH---KRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVP------PLTYKMYLHT 117 (184)
Q Consensus 47 ~l~~~~~~~~v~~~~~~~~~~~---~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~~~~~------~~v~~~F~~~ 117 (184)
+.+++.|.+.|=+.-....... ..-+.+++.+++.|+.+...+............ +.+. -..+......
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~i~~ 79 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEEN--GSANDEREEALEYLKKAIDL 79 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTS--TTSSSHHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccc--cCcchhhHHHHHHHHHHHHH
Confidence 4567777887766544332222 344688889999999977665444333322211 1011 1122222223
Q ss_pred hhhccccc----cC----------cchhHHHHHHHHHHHHHHHhCCCeEEEEe-----CChh---HHHHHHHHHcCcCeE
Q psy17626 118 VSCIGTMH----IG----------YNRFRFLLECLADLDRQLKSHGGQLFIVQ-----GSPI---SIFQKLKRELNFTKL 175 (184)
Q Consensus 118 ~~~~~~~~----~~----------~~r~~fl~~~L~~L~~~L~~~g~~L~v~~-----g~~~---~~l~~l~~~~~~~~v 175 (184)
...++... .+ ......+.+.|..|...+++.|+.+.+-. .... +.+.+++++.+-+.+
T Consensus 80 a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (213)
T PF01261_consen 80 AKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDSPNV 159 (213)
T ss_dssp HHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTTTE
T ss_pred HHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcCCCcc
Confidence 33333211 11 13456788899999999999999888754 1222 778899999998888
Q ss_pred EEccccc
Q psy17626 176 CFEQDCE 182 (184)
Q Consensus 176 ~~n~~~~ 182 (184)
..+-|..
T Consensus 160 ~i~~D~~ 166 (213)
T PF01261_consen 160 GICFDTG 166 (213)
T ss_dssp EEEEEHH
T ss_pred eEEEehH
Confidence 7776653
No 35
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=83.09 E-value=7.9 Score=29.76 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCeEEEEE--C---ChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 19 CLADLDRQLKSHGGQLFIVQ--G---SPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~--g---~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
.+.-++.+-+.+|+||+... | +-.+.+.+++++.+++.|++-.-...+-+.| +++.|++.|++..
T Consensus 46 ~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI~s~~qr~~---~e~v~~~lgl~~~ 115 (223)
T TIGR00290 46 NAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAIYSEYQKTR---IERVCRELGLKSF 115 (223)
T ss_pred CHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCcccHHHHHH---HHHHHHhcCCEEe
Confidence 44555566677899997643 2 2445566667777999999986555444444 4556677788755
No 36
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=82.49 E-value=4 Score=30.14 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcce
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 56 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 56 (184)
.....++=++|++.|+++.++.|+.......+++..++..
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~ 168 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD 168 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS
T ss_pred hhhhhhhhhhhhccCcceeeeecccccccccccccccccc
Confidence 3456677778888999999999999999999999999955
No 37
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=82.48 E-value=2.2 Score=30.68 Aligned_cols=42 Identities=19% Similarity=0.168 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEe
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 60 (184)
...++-+.|++.|.++.|+.|.....+..+++.++++.++.|
T Consensus 77 g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~ 118 (177)
T TIGR01488 77 GARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFAN 118 (177)
T ss_pred CHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheee
Confidence 344444555556666666666666666666666666555544
No 38
>KOG1615|consensus
Probab=81.97 E-value=2.6 Score=31.77 Aligned_cols=43 Identities=16% Similarity=0.416 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcce--EEEee
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK--LCFEQ 61 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~--v~~~~ 61 (184)
.+.+|-+.|+++|..++++.|.-...+.-++.+.++.. +|+|.
T Consensus 92 Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~ 136 (227)
T KOG1615|consen 92 GIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANE 136 (227)
T ss_pred CHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhhe
Confidence 57789999999999999999999888889999999887 88875
No 39
>PRK11175 universal stress protein UspE; Provisional
Probab=81.91 E-value=23 Score=27.87 Aligned_cols=160 Identities=6% Similarity=-0.028 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCCeEE--EE-ECChHHHHHHHHHHcCcceEEEeecccch-hHHH-HHHHHHHHHhCCCeEEEecCceee
Q psy17626 20 LADLDRQLKSHGGQLF--IV-QGSPISIFQKLKRELNFTKLCFEQDCEAL-WHKR-DKKVKKWCAENNITVKEFVSHTLW 94 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~--v~-~g~~~~~l~~l~~~~~~~~v~~~~~~~~~-~~~r-d~~v~~~l~~~gi~~~~~~~~~L~ 94 (184)
|.+..+.++..|++.. +. .|++.+.|.+.+++.+++-|+.-..-... .... -....+.+....+++..+.....-
T Consensus 71 l~~~~~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~~~~~ 150 (305)
T PRK11175 71 IREQAKPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDQDWP 150 (305)
T ss_pred HHHHHHHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEecccccC
Confidence 4444445555676543 34 58999999999999999999997542221 1111 112244566678888777654332
Q ss_pred cccccccccCCCCc---------hhHHHHHHHhhhc-cc-----cccC--c---------chh-HH---HH-HHHHHHHH
Q psy17626 95 DPEVVIQTNGNVPP---------LTYKMYLHTVSCI-GT-----MHIG--Y---------NRF-RF---LL-ECLADLDR 143 (184)
Q Consensus 95 ~p~~i~~~~~~~~~---------~v~~~F~~~~~~~-~~-----~~~~--~---------~r~-~f---l~-~~L~~L~~ 143 (184)
++..|.-.-+++.. .....-....... +. +-.. + ... .+ +. +....+++
T Consensus 151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 230 (305)
T PRK11175 151 EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKA 230 (305)
T ss_pred CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHHHHH
Confidence 34444432111111 1111111111111 10 0000 0 000 01 11 12333444
Q ss_pred HHHhCCCe---EEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 144 QLKSHGGQ---LFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 144 ~L~~~g~~---L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
-+++.|++ ..+..|++.+.+.+.+++.+++-|+...
T Consensus 231 ~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~ 269 (305)
T PRK11175 231 LRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGT 269 (305)
T ss_pred HHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECC
Confidence 44455654 5667899999999999999999988653
No 40
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=81.54 E-value=22 Score=27.30 Aligned_cols=158 Identities=9% Similarity=-0.034 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECCh----HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~~----~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|..+-+..+.+.++++|..+.+...+. .+.+..+....+++.|.+... .+. + ...+.+.+.|+++..++
T Consensus 12 ~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~-~~~----~-~~~~~l~~~~iPvv~~~ 85 (269)
T cd06297 12 EFYRRLLEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASY-DLT----E-RLAERRLPTERPVVLVD 85 (269)
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC-ccC----h-HHHHHHhhcCCCEEEEc
Confidence 4777888899999999999998876532 233444556678999988742 111 1 23344567799998886
Q ss_pred CceeecccccccccCCCCchhHHHHHHHhhhccccc--cCcchhH------HHHHHHHHHHHHHHhCCCeEE---EEeCC
Q psy17626 90 SHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMH--IGYNRFR------FLLECLADLDRQLKSHGGQLF---IVQGS 158 (184)
Q Consensus 90 ~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~~~~~--~~~~r~~------fl~~~L~~L~~~L~~~g~~L~---v~~g~ 158 (184)
... -+...+..++ .-..+..-........... .+..... .-.+.++...+.+++.|+++. +..++
T Consensus 86 ~~~-~~~~~v~~d~---~~~g~~a~~~L~~~~~~i~~i~~~~~~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~ 161 (269)
T cd06297 86 AEN-PRFDSFYLDN---RLGGRLAGAYLADFPGRIGAITVEEEPDRAFRRTVFAERRAGFQQALKDAGRPFSPDLLAITD 161 (269)
T ss_pred cCC-CCCCEEEECc---HHHHHHHHHHHHHhCCceEEEeCccccccccccccHHHHHHHHHHHHHHcCCCCChhhEEeCC
Confidence 531 0111121111 0011111111111111110 0111111 334567778888888887542 33332
Q ss_pred -----hhHHHHHHHHHc-CcCeEEEcccc
Q psy17626 159 -----PISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 159 -----~~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
..+.+.++.+.. .++.|+++.|.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 190 (269)
T cd06297 162 HSEEGGRLAMRHLLEKASPPLAVFASADQ 190 (269)
T ss_pred CChhhHHHHHHHHHcCCCCCcEEEEcCcH
Confidence 235666776543 58999988763
No 41
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=81.34 E-value=11 Score=28.95 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEE----C------ChHHHHHHHHHHcCcceEEEe-----ecccchh-HHHHHHHHHHHHhC
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQ----G------SPISIFQKLKRELNFTKLCFE-----QDCEALW-HKRDKKVKKWCAEN 81 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~----g------~~~~~l~~l~~~~~~~~v~~~-----~~~~~~~-~~rd~~v~~~l~~~ 81 (184)
+.|.++-+.+++.|+.|+++= | +-...|.+++++.++..||.| +|..|.. ..--+.+.+.+++.
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~ 93 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLAEI 93 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHHhh
Confidence 567788888888899999871 2 345678888899999988877 5566663 34456778888776
Q ss_pred CC-eEEEecCcee
Q psy17626 82 NI-TVKEFVSHTL 93 (184)
Q Consensus 82 gi-~~~~~~~~~L 93 (184)
|+ ++-++.++..
T Consensus 94 ~~g~IAsv~GRyy 106 (223)
T PF06415_consen 94 GIGRIASVSGRYY 106 (223)
T ss_dssp TCTEEEEEEECCC
T ss_pred CCceEEEEeceee
Confidence 55 7776666544
No 42
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=81.01 E-value=9.1 Score=25.64 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCeEEEE-ECChHHHHHHHHHHcCcceEEEeec
Q psy17626 20 LADLDRQLKSHGGQLFIV-QGSPISIFQKLKRELNFTKLCFEQD 62 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~-~g~~~~~l~~l~~~~~~~~v~~~~~ 62 (184)
|..+.+..++.+.+..++ .|++.+.|.+.+++++++.|+.-..
T Consensus 51 l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~dllviG~~ 94 (124)
T cd01987 51 LAEALRLAEELGAEVVTLPGDDVAEAIVEFAREHNVTQIVVGKS 94 (124)
T ss_pred HHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHHcCCCEEEeCCC
Confidence 444555555667665443 4578888888888888888887654
No 43
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=80.44 E-value=15 Score=31.11 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEC--ChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQG--SPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g--~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
|-+-|..+.+++.++|+..++-.. ++-+.+.+++.+.+++.|+.++....+|.. +.+.|++.|+++...
T Consensus 63 Ld~~l~~~~~~v~~~Gg~vy~A~~aedA~~ii~~iv~~k~~k~vVKsKSmvseEIg----ln~~Le~~G~ev~ET 133 (459)
T COG1139 63 LDEYLEQLEENVTRNGGHVYFAKDAEDAREIIGEIVGEKNGKKVVKSKSMVSEEIG----LNHYLEEKGIEVWET 133 (459)
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHHHHhhccCcEEEEecchhHHHhh----hHHHHHHcCCeEEEc
Confidence 334456677788899999998864 566789999999999999999987766664 456677889987654
No 44
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=80.29 E-value=6.9 Score=28.78 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=39.2
Q ss_pred HhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCe
Q psy17626 28 KSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 28 ~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~ 84 (184)
++.|+++.|..|.+...+..++++.+++.+|...+ + .-..+.+++++.|+.
T Consensus 61 ~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~g~~--~----k~~~l~~~~~~~gl~ 111 (183)
T PRK09484 61 LTSGIEVAIITGRKSKLVEDRMTTLGITHLYQGQS--N----KLIAFSDLLEKLAIA 111 (183)
T ss_pred HHCCCEEEEEeCCCcHHHHHHHHHcCCceeecCCC--c----HHHHHHHHHHHhCCC
Confidence 45799999999999999999999999987765321 1 125777888887873
No 45
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=80.28 E-value=5.8 Score=28.75 Aligned_cols=41 Identities=29% Similarity=0.435 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcce--EEEeec
Q psy17626 22 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK--LCFEQD 62 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~--v~~~~~ 62 (184)
++=+.|++.|.+.+|+.|++...+..+++..++.. |+.++.
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 55566778899999999999999999999999987 888876
No 46
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=80.08 E-value=14 Score=25.84 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc----eEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT----KLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~----~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+.++=+.|++.|.++.++.+.+...+...++..++. .|+...+++..--. -...+..+++.|+
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~-~~~~~~~~~~~~~ 148 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPD-PDAYRRALEKLGI 148 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTS-HHHHHHHHHHHTS
T ss_pred hhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhH-HHHHHHHHHHcCC
Confidence 445556667678888888888878777777777644 67766665532111 1234444444444
No 47
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=79.21 E-value=5.3 Score=29.28 Aligned_cols=39 Identities=28% Similarity=0.319 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEE
Q psy17626 21 ADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 59 (184)
.++=+.|++.|.++.|+.+.+...+..+++.++++.++.
T Consensus 86 ~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~ 124 (201)
T TIGR01491 86 EELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYS 124 (201)
T ss_pred HHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEE
Confidence 344444455555555555555555555555555554443
No 48
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=79.07 E-value=5.1 Score=28.75 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
...++-+.+++.|.++.|+.+.....+..+++.+|++.++.|.
T Consensus 77 g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~ 119 (177)
T TIGR01488 77 GARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANR 119 (177)
T ss_pred CHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeee
Confidence 3445556677889999999999999999999999999888763
No 49
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=79.06 E-value=6.6 Score=29.56 Aligned_cols=64 Identities=8% Similarity=0.118 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEE----EeecccchhHHHHHHHHHHHHhCCCe
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC----FEQDCEALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~----~~~~~~~~~~~rd~~v~~~l~~~gi~ 84 (184)
+.++=+.|++.|.++.|+.+.....+..+.+..+++..+ ...+. +..+.-.+.+..++++.|+.
T Consensus 97 ~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~-~~~Kp~~~~~~~~~~~~~~~ 164 (222)
T PRK10826 97 VREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKL-PYSKPHPEVYLNCAAKLGVD 164 (222)
T ss_pred HHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccC-CCCCCCHHHHHHHHHHcCCC
Confidence 566667788889999999998888888888887765544 22221 11122224666777777763
No 50
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=78.96 E-value=7.4 Score=28.66 Aligned_cols=42 Identities=24% Similarity=0.203 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
...++-+.+.+.|.++.|+.+.+...+..+++..|+++++.+
T Consensus 91 ~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~ 132 (202)
T TIGR01490 91 EARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGT 132 (202)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEec
Confidence 334444557778999999999999999999999999998876
No 51
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=78.51 E-value=4.8 Score=31.99 Aligned_cols=44 Identities=14% Similarity=0.220 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC----eEEEcc
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT----KLCFEQ 179 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~----~v~~n~ 179 (184)
....++=..|.+.|+++.|++|.....+..+.++.++. +|++|.
T Consensus 124 pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~ 171 (277)
T TIGR01544 124 DGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNF 171 (277)
T ss_pred cCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeee
Confidence 35667778899999999999999999999999988885 777764
No 52
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=78.42 E-value=5.6 Score=30.20 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
....+|-+.|++.|....|++|.+.-....+++++|++.++.|.
T Consensus 80 ~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~ 123 (212)
T COG0560 80 PGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANE 123 (212)
T ss_pred ccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeE
Confidence 34677888999999999999999999999999999999999885
No 53
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=78.39 E-value=13 Score=32.44 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhcCC-eEEEEECChHHHHHHHHHHcCcceEEEee
Q psy17626 16 LLECLADLDRQLKSHGG-QLFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 61 (184)
+.....++=+.|++.|+ ++.++.|++......++++.+++.+|.+.
T Consensus 363 l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~ 409 (536)
T TIGR01512 363 PRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAEL 409 (536)
T ss_pred chHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhcc
Confidence 45566777788888999 99999999999999999999999887643
No 54
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=77.76 E-value=16 Score=28.60 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=49.6
Q ss_pred HHHHHHhcC-CeEEEEECC--hHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 23 LDRQLKSHG-GQLFIVQGS--PISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 23 L~~~L~~~g-~~L~v~~g~--~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
+..++.... ..+.++.|. ..+.+..++++.+++.|+= -.-||....-+.+.++|++.||++.+|.=
T Consensus 33 ~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vID--ATHPfA~~is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 33 YGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVID--ATHPFAAEISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred hhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEE--CCCchHHHHHHHHHHHHhhcCcceEEEEc
Confidence 344444322 456777776 5788999999999998862 22488999999999999999999888753
No 55
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=77.58 E-value=11 Score=25.33 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEE---ECChHHHHHHHHHHcCcceEEEeec
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIV---QGSPISIFQKLKRELNFTKLCFEQD 62 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~---~g~~~~~l~~l~~~~~~~~v~~~~~ 62 (184)
-..+.+..+.+.+++.|++.... .|++.+.|.+++++.+++-|++-..
T Consensus 53 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~ 103 (132)
T cd01988 53 RARKLLRQAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWH 103 (132)
T ss_pred HHHHHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecC
Confidence 34566677777777778774432 4789999999999999999998765
No 56
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=77.55 E-value=20 Score=32.35 Aligned_cols=59 Identities=8% Similarity=0.031 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCC
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENN 82 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~g 82 (184)
...+.=++|++.|++..++.||....-..++++.+++.++++- .|..+.+ .|+ .+++.|
T Consensus 449 ~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~--~PedK~~--iV~-~lQ~~G 507 (679)
T PRK01122 449 GIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEA--TPEDKLA--LIR-QEQAEG 507 (679)
T ss_pred hHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccC--CHHHHHH--HHH-HHHHcC
Confidence 3445556788899999999999999999999999999988754 4544433 233 345555
No 57
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=77.54 E-value=5.4 Score=31.69 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc----eEEEee
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT----KLCFEQ 61 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~----~v~~~~ 61 (184)
...+|=+.|+++|+++.|+.|.....+..+++..++. .|++|+
T Consensus 125 G~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~ 171 (277)
T TIGR01544 125 GYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNF 171 (277)
T ss_pred CHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeee
Confidence 4556677777778888888887777777777776653 554443
No 58
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=77.50 E-value=31 Score=26.76 Aligned_cols=151 Identities=11% Similarity=-0.013 Sum_probs=82.1
Q ss_pred cCCeEEEEECChHHHHHHHHHHcCcceEEEeec----ccch-hHHHHHHHHHHHHhCCCeEEEecCc-eeeccccccccc
Q psy17626 30 HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD----CEAL-WHKRDKKVKKWCAENNITVKEFVSH-TLWDPEVVIQTN 103 (184)
Q Consensus 30 ~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~----~~~~-~~~rd~~v~~~l~~~gi~~~~~~~~-~L~~p~~i~~~~ 103 (184)
+|+.-.....-+.+...+.+++.|++.|=.... +.+. .....+.+++.+++.|+++..+... ..+++. +...+
T Consensus 3 lg~~t~~~~~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~-~~~~~ 81 (275)
T PRK09856 3 TGMFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYN-MMLGD 81 (275)
T ss_pred eeeeehhheeCCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCcc-ccCCC
Confidence 344444444556677777788888886654211 1121 1223467888999999998765432 122111 11110
Q ss_pred CC---CCchhHHHHHHHhhhccccc------------cCcchhHHHHHHHHHHHHHHHhCCCeEEEEeC--------Chh
Q psy17626 104 GN---VPPLTYKMYLHTVSCIGTMH------------IGYNRFRFLLECLADLDRQLKSHGGQLFIVQG--------SPI 160 (184)
Q Consensus 104 ~~---~~~~v~~~F~~~~~~~~~~~------------~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g--------~~~ 160 (184)
.. ..-..+.........++... .....+..+.++|+.|..-.++.|+.|.+-.- ...
T Consensus 82 ~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~~~~t~ 161 (275)
T PRK09856 82 EHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNA 161 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCcccccCCH
Confidence 00 01112222333333433211 01123567888999999999999999887641 124
Q ss_pred HHHHHHHHHcCcCeEEEcccc
Q psy17626 161 SIFQKLKRELNFTKLCFEQDC 181 (184)
Q Consensus 161 ~~l~~l~~~~~~~~v~~n~~~ 181 (184)
+.+.+++++.+-..+..+-|.
T Consensus 162 ~~~~~l~~~~~~~~v~~~~D~ 182 (275)
T PRK09856 162 NDVLHALALVPSPRLFSMVDI 182 (275)
T ss_pred HHHHHHHHHcCCCcceeEEee
Confidence 567778888776555444443
No 59
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=77.48 E-value=5.8 Score=29.04 Aligned_cols=42 Identities=26% Similarity=0.290 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
...++=+.|++.|+++.|+.+.....+..+.+.+|++.+|.+
T Consensus 84 g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~ 125 (201)
T TIGR01491 84 YAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSN 125 (201)
T ss_pred cHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEE
Confidence 445556677778999999999999989999999999988765
No 60
>PRK05723 flavodoxin; Provisional
Probab=77.26 E-value=24 Score=25.24 Aligned_cols=66 Identities=8% Similarity=-0.033 Sum_probs=41.7
Q ss_pred CCCCchhHHHHHHHhhhccc----------cccCcchh-HHHHHHHHHHHHHHHhCCCeEEEE----e----CChhHHHH
Q psy17626 104 GNVPPLTYKMYLHTVSCIGT----------MHIGYNRF-RFLLECLADLDRQLKSHGGQLFIV----Q----GSPISIFQ 164 (184)
Q Consensus 104 ~~~~~~v~~~F~~~~~~~~~----------~~~~~~r~-~fl~~~L~~L~~~L~~~g~~L~v~----~----g~~~~~l~ 164 (184)
.|++|.....|+........ -..|.... .........|.+.|+++|..-+.- . +++++.+.
T Consensus 60 ~Ge~Pd~~~~f~~~L~~~~~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~ 139 (151)
T PRK05723 60 MGELPDNLMPLYSAIRDQLPAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLDASETVTPETDAE 139 (151)
T ss_pred CCCCchhHHHHHHHHHhcCccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEeecCCCCChHHHHH
Confidence 34799998888876653211 11234444 567788999999999999865442 2 23455566
Q ss_pred HHHHH
Q psy17626 165 KLKRE 169 (184)
Q Consensus 165 ~l~~~ 169 (184)
.++++
T Consensus 140 ~W~~~ 144 (151)
T PRK05723 140 PWLAE 144 (151)
T ss_pred HHHHH
Confidence 55554
No 61
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=77.19 E-value=8.9 Score=25.46 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc----ceEEEeecc
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDC 63 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~ 63 (184)
+...+.++-+.|++.|.++.++.|.+...+..+++..++ +.++...+.
T Consensus 25 ~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 76 (139)
T cd01427 25 LYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGA 76 (139)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchh
Confidence 345566666777888999999999999999999988876 556655443
No 62
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=76.86 E-value=21 Score=32.19 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeE
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
..+.=++|++.|++..++.||....-..++++.|++.+|++- .|..+.+ .| +.+++.|-.+
T Consensus 446 a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~--~PedK~~--iV-~~lQ~~G~~V 506 (673)
T PRK14010 446 LVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAEC--KPEDKIN--VI-REEQAKGHIV 506 (673)
T ss_pred HHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCC--CHHHHHH--HH-HHHHhCCCEE
Confidence 344556778889999999999999999999999999988754 4544443 23 3345555333
No 63
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=76.68 E-value=14 Score=25.57 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCe--EEEEEC-ChHHHHHHHHHHcCcceEEEeec
Q psy17626 19 CLADLDRQLKSHGGQ--LFIVQG-SPISIFQKLKRELNFTKLCFEQD 62 (184)
Q Consensus 19 sL~~L~~~L~~~g~~--L~v~~g-~~~~~l~~l~~~~~~~~v~~~~~ 62 (184)
.|....+.+.+.|.+ ..+..| +|.+.|.+.+++.+++.|+.-..
T Consensus 66 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~ 112 (146)
T cd01989 66 LLLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGAS 112 (146)
T ss_pred HHHHHHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEecc
Confidence 344444455455654 455565 89999999999999999998753
No 64
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=76.29 E-value=23 Score=30.96 Aligned_cols=45 Identities=22% Similarity=0.215 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhcC-CeEEEEECChHHHHHHHHHHcCcceEEEe
Q psy17626 16 LLECLADLDRQLKSHG-GQLFIVQGSPISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g-~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 60 (184)
+.....++=+.|++.| +++.+..|++......++++.+++.+|.+
T Consensus 385 ~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~~ 430 (556)
T TIGR01525 385 LRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAE 430 (556)
T ss_pred chHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeecc
Confidence 4556677777888899 99999999999999999999999988875
No 65
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=76.23 E-value=12 Score=30.85 Aligned_cols=27 Identities=7% Similarity=0.270 Sum_probs=26.0
Q ss_pred CChhHHHHHHHHHcCcCeEEEcccccC
Q psy17626 157 GSPISIFQKLKRELNFTKLCFEQDCEA 183 (184)
Q Consensus 157 g~~~~~l~~l~~~~~~~~v~~n~~~~~ 183 (184)
|++.+.+.+.+++++++.|+...+|.|
T Consensus 99 G~pae~Iv~~Aee~~aDLIVm~~~~~~ 125 (357)
T PRK12652 99 GDYAEVLIAYAEEHGIDRVVLDPEYNP 125 (357)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 899999999999999999999999987
No 66
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=75.67 E-value=8.7 Score=28.26 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe--EEEc
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK--LCFE 178 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~--v~~n 178 (184)
.....++-+.|++.|+++.++.||.......++++.|+.. +|..
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~ 174 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFAR 174 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEES
T ss_pred hhhhhhhhhhhhccCcceeeeecccccccccccccccccccccccc
Confidence 4456666677888899999999999999999999999966 5544
No 67
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=75.31 E-value=25 Score=28.57 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEee
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 61 (184)
.....++-+.|++.|.++.|..|........+.++.+++.++.|.
T Consensus 183 ~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~ 227 (322)
T PRK11133 183 MPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANE 227 (322)
T ss_pred ChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeE
Confidence 345567778889999999999998877778888889999888753
No 68
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=74.88 E-value=5.8 Score=29.68 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEe
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 60 (184)
...++=+.|++.|.++.|+.+.....+..+++..+++.++.+
T Consensus 89 g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~ 130 (219)
T TIGR00338 89 GAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFAN 130 (219)
T ss_pred CHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEee
Confidence 344555666666777777777666666666766676665544
No 69
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=74.83 E-value=32 Score=31.05 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCC
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENN 82 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~g 82 (184)
...+.=++|++.|++..++.|+.......++++.+++.++++. .|..+.+ .++++ ++.|
T Consensus 450 ~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~a~~--~PedK~~--~v~~l-q~~g 508 (675)
T TIGR01497 450 GIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFIAEA--TPEDKIA--LIRQE-QAEG 508 (675)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEEcCC--CHHHHHH--HHHHH-HHcC
Confidence 4455566778889999999999999999999999999988753 4543332 34444 3344
No 70
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=74.82 E-value=24 Score=26.36 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCCeEEEEE--CCh---HH----HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 19 CLADLDRQLKSHGGQLFIVQ--GSP---IS----IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~--g~~---~~----~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
.+..++..-+.+|+|++++. ++. .+ .|.++.++ +++.|++-.-..-+.+.| +++.|++.|++..
T Consensus 46 ~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~---~e~~~~~~gl~~~ 118 (194)
T cd01994 46 NHELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEE-GVDAVVFGAILSEYQRTR---VERVCERLGLEPL 118 (194)
T ss_pred CHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHc-CCCEEEECccccHHHHHH---HHHHHHHcCCEEE
Confidence 55666677778899998875 221 12 23444444 688888765554444444 4555677788755
No 71
>PRK10490 sensor protein KdpD; Provisional
Probab=74.59 E-value=22 Score=33.12 Aligned_cols=76 Identities=14% Similarity=0.264 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCeEEEEEC-ChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHH-hCCCeEEE
Q psy17626 10 YNRFRFLLECLADLDRQLKSHGGQLFIVQG-SPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCA-ENNITVKE 87 (184)
Q Consensus 10 ~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~-~~gi~~~~ 87 (184)
.....-+.+.+ .|.++ +|....++.| ++.+.|.+++++.++|.|+.-+.-.+....+..-+.+.++ ..+|.++.
T Consensus 296 ~~~~~~l~~~~-~lA~~---lGa~~~~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~~~~~s~~~~l~r~~~~idi~i 371 (895)
T PRK10490 296 EKKRRAILSAL-RLAQE---LGAETATLSDPAEEKAVLRYAREHNLGKIIIGRRASRRWWRRESFADRLARLGPDLDLVI 371 (895)
T ss_pred HHHHHHHHHHH-HHHHH---cCCEEEEEeCCCHHHHHHHHHHHhCCCEEEECCCCCCCCccCCCHHHHHHHhCCCCCEEE
Confidence 33444455555 35555 4999888877 6889999999999999999988654322111112333333 35788877
Q ss_pred ec
Q psy17626 88 FV 89 (184)
Q Consensus 88 ~~ 89 (184)
+.
T Consensus 372 v~ 373 (895)
T PRK10490 372 VA 373 (895)
T ss_pred Ee
Confidence 74
No 72
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=74.25 E-value=17 Score=25.82 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=40.2
Q ss_pred HHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 23 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 23 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
.-+.|++.|..+.|..+.+......+++.++++..+... .+ --+.+.+++++.|+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~~~--~~----k~~~~~~~~~~~~~ 90 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQGQ--SN----KLIAFSDILEKLAL 90 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEecc--cc----hHHHHHHHHHHcCC
Confidence 345567789999999999988889999999999776542 11 13356666676665
No 73
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=73.65 E-value=37 Score=25.73 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC--hHH--HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGS--PIS--IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~--~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|+.+-+..+.+.+++.|..+.+..++ +.. .+.+.+...+++.|++.-.- .. .. .+.+.|+++..++
T Consensus 12 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~-~~-------~~-~~~~~gipvv~~~ 82 (265)
T cd06291 12 PFFSELARAVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTHN-LG-------IE-EYENIDLPIVSFD 82 (265)
T ss_pred hhHHHHHHHHHHHHHHCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEecCC-cC-------HH-HHhcCCCCEEEEe
Confidence 366777778888899999998887543 322 23334556788888875421 11 11 3356799999887
Q ss_pred CceeecccccccccCCCCchhHHHHHHHhhhcccccc----Ccch-hHHHHHHHHHHHHHHHhCCCeEEEE--eC--C--
Q psy17626 90 SHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHI----GYNR-FRFLLECLADLDRQLKSHGGQLFIV--QG--S-- 158 (184)
Q Consensus 90 ~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~~~~~~----~~~r-~~fl~~~L~~L~~~L~~~g~~L~v~--~g--~-- 158 (184)
...- ..+..= +.+.+..-........+.+.-.. +... .......++-+.+.|++.|+.+... .+ +
T Consensus 83 ~~~~---~~~~~V-~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~ 158 (265)
T cd06291 83 RYLS---ENIPIV-SSDNYEGGRLAAEELIERGCKHIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEVRIIEIQENFDDA 158 (265)
T ss_pred CCCC---CCCCeE-eechHHHHHHHHHHHHHcCCcEEEEEccCcccccchHHHHHHHHHHHHHcCCCCChheeeccccch
Confidence 6531 111110 00111111111111111121111 1111 1223345566777788777764322 21 1
Q ss_pred -hhHHHHHHHHHc-CcCeEEEccc
Q psy17626 159 -PISIFQKLKREL-NFTKLCFEQD 180 (184)
Q Consensus 159 -~~~~l~~l~~~~-~~~~v~~n~~ 180 (184)
..+.+.++.+++ ..+.||++.+
T Consensus 159 ~~~~~~~~~l~~~~~~~ai~~~~d 182 (265)
T cd06291 159 EKKEEIKELLEEYPDIDGIFASND 182 (265)
T ss_pred HHHHHHHHHHhCCCCCCEEEECCh
Confidence 245667777665 4799998655
No 74
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=73.33 E-value=19 Score=26.40 Aligned_cols=11 Identities=18% Similarity=0.105 Sum_probs=5.3
Q ss_pred ChHHHHHHHHH
Q psy17626 40 SPISIFQKLKR 50 (184)
Q Consensus 40 ~~~~~l~~l~~ 50 (184)
+..+.|..|.+
T Consensus 96 ~~~~~L~~L~~ 106 (198)
T TIGR01428 96 DVPAGLRALKE 106 (198)
T ss_pred CHHHHHHHHHH
Confidence 34455555543
No 75
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=73.23 E-value=27 Score=24.01 Aligned_cols=65 Identities=8% Similarity=0.128 Sum_probs=40.1
Q ss_pred HHHHHHhcCCe---EEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 23 LDRQLKSHGGQ---LFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 23 L~~~L~~~g~~---L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
|++-+...|.+ ..+..|+|.+.|.+.+++.+++-|+.-.. +......-....+.++...+++..+
T Consensus 70 l~~~~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~-~~~~~~lgSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 70 LTELSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHH-QDFWSKLMSSARQLINTVHVDMLIV 137 (144)
T ss_pred HHHHHHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCc-ccHHHHHHHHHHHHHhhCCCCEEEe
Confidence 33333445655 34457999999999999999999999654 2221212222233455566766543
No 76
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=73.07 E-value=39 Score=30.01 Aligned_cols=92 Identities=11% Similarity=0.146 Sum_probs=54.6
Q ss_pred cchhHHHHHHHHHHHHhCCCeEEEecCceeeccccccc----------ccCCCCchhHHHHHHHhhhcccc---------
Q psy17626 64 EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQ----------TNGNVPPLTYKMYLHTVSCIGTM--------- 124 (184)
Q Consensus 64 ~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~----------~~~~~~~~v~~~F~~~~~~~~~~--------- 124 (184)
+.....--+.+.+.+.+.|+.+....-.- +++.++.. ...|++|.....|+........+
T Consensus 72 TGnae~lA~~la~~l~~~g~~~~v~~~~d-~~~~~L~~~~~vl~v~ST~G~Ge~Pdna~~F~~~L~~~~~~~L~~~~faV 150 (600)
T PRK10953 72 TGNARRVAEQLRDDLLAAKLNVNLVNAGD-YKFKQIAQEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAV 150 (600)
T ss_pred chHHHHHHHHHHHHHHhCCCCcEEechHh-CCHhHhccCCeEEEEECCCCCCCCChhHHHHHHHHhhCcCcCCCCCEEEE
Confidence 34445555566666666666544332111 12332211 11347999888888766433222
Q ss_pred -ccCcchhHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy17626 125 -HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ 156 (184)
Q Consensus 125 -~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~ 156 (184)
..|.....+....-..+++.|+++|..-++-.
T Consensus 151 fGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~ 183 (600)
T PRK10953 151 FGLGDTSYEFFCQAGKDFDSKLAELGAERLLDR 183 (600)
T ss_pred EccCccCHHHHHHHHHHHHHHHHHCCCeEeecc
Confidence 22455567788899999999999998766543
No 77
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=72.81 E-value=21 Score=23.79 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCeEEEE-eCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 137 CLADLDRQLKSHGGQLFIV-QGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~-~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
.|+.+.+..++.+.+..+. .|++.+.|.+.+++++++.|+.-.
T Consensus 50 ~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~dllviG~ 93 (124)
T cd01987 50 RLAEALRLAEELGAEVVTLPGDDVAEAIVEFAREHNVTQIVVGK 93 (124)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHHcCCCEEEeCC
Confidence 3555555566667765444 467889999999999999998754
No 78
>PRK10116 universal stress protein UspC; Provisional
Probab=72.60 E-value=28 Score=23.83 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=39.7
Q ss_pred HhcCCe---EEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHH-HHHHHHhCCCeEEEe
Q psy17626 28 KSHGGQ---LFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKK-VKKWCAENNITVKEF 88 (184)
Q Consensus 28 ~~~g~~---L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~-v~~~l~~~gi~~~~~ 88 (184)
...|++ ..+..|++.+.|.+.+++.+++-|+....-. ....+--. ..+.+...++++..+
T Consensus 74 ~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~-~~~~~~~s~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 74 QDADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNH-SFFSRASCSAKRVIASSEVDVLLV 137 (142)
T ss_pred HhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcc-hHHHHHHHHHHHHHhcCCCCEEEE
Confidence 344643 5667899999999999999999999954422 22222222 344566677776654
No 79
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=72.50 E-value=37 Score=26.54 Aligned_cols=54 Identities=9% Similarity=-0.055 Sum_probs=42.8
Q ss_pred EEEEECCh--HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 34 LFIVQGSP--ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 34 L~v~~g~~--~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
+.++.|.. .+.+..++++.+++.|+= ..-||....-+.+.+.|++.||++.+|.
T Consensus 44 ~~v~~G~l~~~~~l~~~l~~~~i~~VID--ATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 44 GPVRVGGFGGAEGLAAYLREEGIDLVID--ATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred ceEEECCCCCHHHHHHHHHHCCCCEEEE--CCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 34455644 588999999999998852 2248888888999999999999988876
No 80
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=72.24 E-value=13 Score=26.96 Aligned_cols=41 Identities=29% Similarity=0.435 Sum_probs=34.7
Q ss_pred HHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe--EEEccc
Q psy17626 140 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK--LCFEQD 180 (184)
Q Consensus 140 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~--v~~n~~ 180 (184)
++-+.+++.|.+..|+.|++...+..+++..++.. ++.+.-
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 44455777799999999999999999999999998 887765
No 81
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=71.94 E-value=18 Score=27.77 Aligned_cols=50 Identities=6% Similarity=0.207 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHHHHHHHhCCCeEEEEeCC-------hhHHHHHHHHHcCcCeEEEc
Q psy17626 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGS-------PISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 129 ~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~-------~~~~l~~l~~~~~~~~v~~n 178 (184)
.+..++..++....+.|++.|..+..+.-+ -.+.|.+++++++++.|.+-
T Consensus 42 qKl~l~~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~ 98 (224)
T PF04244_consen 42 QKLVLFFSAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVM 98 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEE
Confidence 455788999999999999999999988633 25788899999999999765
No 82
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=71.83 E-value=42 Score=25.53 Aligned_cols=72 Identities=13% Similarity=0.026 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECChHH----HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPIS----IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~----~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
..|+.+-+..+++.+++.|..+.+...+... .+.....+.+++.|+..... . +..+ +.+.+.|+++..+
T Consensus 14 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~-~-----~~~~-~~l~~~~ipvV~~ 86 (268)
T cd06277 14 PAFYSEIYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGI-S-----TEYI-KEIKELGIPFVLV 86 (268)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCCC-C-----hHHH-HHHhhcCCCEEEE
Confidence 3477777888899999999998887643221 23333456789999985421 1 1123 3355679998877
Q ss_pred cCc
Q psy17626 89 VSH 91 (184)
Q Consensus 89 ~~~ 91 (184)
+..
T Consensus 87 ~~~ 89 (268)
T cd06277 87 DHY 89 (268)
T ss_pred ccC
Confidence 543
No 83
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=71.77 E-value=42 Score=25.53 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCeEEEEECC-----hH----HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGS-----PI----SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~-----~~----~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
.+..++..-+.+|+++.++.-+ .. ..+.++.++ +++.|++-.-...+.+. .+.+.+.+.|+++.
T Consensus 44 ~~~~~~~~A~~lgip~~~i~~~~~~~~~~~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~---~~e~v~~~~gl~~~ 116 (218)
T TIGR03679 44 NIELTRLQAEALGIPLVKIETSGEKEKEVEDLKGALKELKRE-GVEGIVTGAIASRYQKS---RIERICEELGLKVF 116 (218)
T ss_pred CHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHHHHHHHHHc-CCCEEEECCcccHhHHH---HHHHHHHhCCCeEE
Confidence 3445555566778888777533 11 223333343 78888776544433333 34455566677654
No 84
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=71.49 E-value=18 Score=23.72 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhcCCeE--EEEECChHHHHHHHHHHcCcceEEEee
Q psy17626 15 FLLECLADLDRQLKSHGGQL--FIVQGSPISIFQKLKRELNFTKLCFEQ 61 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L--~v~~g~~~~~l~~l~~~~~~~~v~~~~ 61 (184)
-..+.|.++...+...|+++ .+..|++.+.|.+.+++.+++.|+...
T Consensus 53 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~ 101 (130)
T cd00293 53 EARALLEALREALAEAGVKVETVVLEGDPAEAILEAAEELGADLIVMGS 101 (130)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHcCCCEEEEcC
Confidence 34566666666665667765 556788999999999999999999865
No 85
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=70.74 E-value=43 Score=25.30 Aligned_cols=159 Identities=13% Similarity=0.038 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCce
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHT 92 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~ 92 (184)
..|..+-+..+.+.+++.|..+.+...+..+...+.....+++.|+.... ... +..+ +.+.+.|+++..++...
T Consensus 11 ~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~-~~~----~~~~-~~~~~~~ipvV~~~~~~ 84 (261)
T cd06272 11 RVALTELVTGINQAISKNGYNMNVSITPSLAEAEDLFKENRFDGVIIFGE-SAS----DVEY-LYKIKLAIPVVSYGVDY 84 (261)
T ss_pred chhHHHHHHHHHHHHHHcCCEEEEEecccHHHHHHHHHHcCcCEEEEeCC-CCC----hHHH-HHHHHcCCCEEEEcccC
Confidence 45788888899999999999988875433333444456678998887532 111 1122 33456789988876532
Q ss_pred eecccccccccCCCCchhHHHHHHHhhhcccccc----CcchhHHHHHHHHHHHHHHHhCCCeE---EEEeC-----Chh
Q psy17626 93 LWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHI----GYNRFRFLLECLADLDRQLKSHGGQL---FIVQG-----SPI 160 (184)
Q Consensus 93 L~~p~~i~~~~~~~~~~v~~~F~~~~~~~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L---~v~~g-----~~~ 160 (184)
-.....+..+ .+..-..-.+...+.+-.+. +........+.+..+.+.+++.|.+. .+..+ +..
T Consensus 85 ~~~~~~V~~d----~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (261)
T cd06272 85 DLKYPIVNVD----NEKAMELAVLYLAEKGHKKIAYIGDLSLDRRQRKRFKGFLETCDENGISISDSHIDVDGLSAEGGD 160 (261)
T ss_pred CCCCCEEEEC----hHHHHHHHHHHHHHcCchhEEEeecccccccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCCHHHHH
Confidence 1111222221 11110000111111111110 11111122345666777888877521 12222 123
Q ss_pred HHHHHHHHHc-CcCeEEEcccc
Q psy17626 161 SIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 161 ~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
+.+.++.++. ..+.||++.+.
T Consensus 161 ~~~~~~l~~~~~~~ai~~~~d~ 182 (261)
T cd06272 161 NAAKKLLKESDLPTAIICGSYD 182 (261)
T ss_pred HHHHHHHcCCCCCCEEEECCcH
Confidence 4556666655 48999988664
No 86
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=70.56 E-value=5.5 Score=35.96 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEccc
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~ 180 (184)
..-.+.-+.|+++|+...++.||...+-..++++.||++++.+--
T Consensus 540 ~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~Aell 584 (713)
T COG2217 540 PDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRAELL 584 (713)
T ss_pred hhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhheccCC
Confidence 344455567888899999999999999999999999999997643
No 87
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=70.02 E-value=30 Score=26.04 Aligned_cols=62 Identities=6% Similarity=-0.020 Sum_probs=38.9
Q ss_pred HHHHHHhcCCeEEEEECC--hHHHHHHHHHHcCcceEEEeeccc-chhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 23 LDRQLKSHGGQLFIVQGS--PISIFQKLKRELNFTKLCFEQDCE-ALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 23 L~~~L~~~g~~L~v~~g~--~~~~l~~l~~~~~~~~v~~~~~~~-~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.-++|+..|..+. .++ ..+.|.+.++ +++.|++.-... +.+......+.+++.+.||+...+
T Consensus 36 ~~~~l~~~g~~vv--~~d~~~~~~l~~al~--g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ 100 (233)
T PF05368_consen 36 RAQQLQALGAEVV--EADYDDPESLVAALK--GVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVP 100 (233)
T ss_dssp HHHHHHHTTTEEE--ES-TT-HHHHHHHHT--TCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEE
T ss_pred hhhhhhcccceEe--ecccCCHHHHHHHHc--CCceEEeecCcchhhhhhhhhhHHHhhhccccceEEE
Confidence 4456667777644 444 3455665555 788888887654 556666667777777788876654
No 88
>PLN02954 phosphoserine phosphatase
Probab=70.01 E-value=9.1 Score=28.72 Aligned_cols=37 Identities=16% Similarity=0.402 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
...++-+.|++.|+++.|+.|.....+..+++.++++
T Consensus 88 g~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~ 124 (224)
T PLN02954 88 GIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIP 124 (224)
T ss_pred cHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCC
Confidence 4444555555666666666666666666666666654
No 89
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=69.47 E-value=47 Score=25.24 Aligned_cols=154 Identities=10% Similarity=0.031 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHh-cCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCce
Q psy17626 14 RFLLECLADLDRQLKS-HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHT 92 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~-~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~ 92 (184)
.|..+-+..+.+.+++ .|..+.+..++..+.+..| ...+++.|..... . + .+...+.+.++++..++...
T Consensus 11 ~~~~~~~~gi~~~~~~~~g~~~~~~~~~~~~~~~~l-~~~~vdGiI~~~~-~------~-~~~~~l~~~~~PvV~~~~~~ 81 (265)
T cd01543 11 SYGRGVLRGIARYAREHGPWSIYLEPRGLQEPLRWL-KDWQGDGIIARID-D------P-EMAEALQKLGIPVVDVSGSR 81 (265)
T ss_pred hhhHHHHHHHHHHHHhcCCeEEEEecccchhhhhhc-cccccceEEEECC-C------H-HHHHHHhhCCCCEEEEeCcc
Confidence 4778888888999998 6778877665544444443 4568998887521 1 1 22244566789988876432
Q ss_pred eec-ccccccccCCCCchhHHHHHHHhhhcccccc---CcchhHHHHHHHHHHHHHHHhCCCeEEEE-----eC-----C
Q psy17626 93 LWD-PEVVIQTNGNVPPLTYKMYLHTVSCIGTMHI---GYNRFRFLLECLADLDRQLKSHGGQLFIV-----QG-----S 158 (184)
Q Consensus 93 L~~-p~~i~~~~~~~~~~v~~~F~~~~~~~~~~~~---~~~r~~fl~~~L~~L~~~L~~~g~~L~v~-----~g-----~ 158 (184)
-.+ ...+..++ ....+..- ....+.+..+. +.............+.+.+++.|.+..+. .+ +
T Consensus 82 ~~~~~~~v~~d~---~~~g~~~~-~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (265)
T cd01543 82 EKPGIPRVTTDN---AAIGRMAA-EHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEE 157 (265)
T ss_pred CCCCCCEEeeCH---HHHHHHHH-HHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHH
Confidence 111 01121111 00111110 01111111110 11111233455667778888888765221 11 2
Q ss_pred hhHHHHHHHHHc-CcCeEEEccc
Q psy17626 159 PISIFQKLKREL-NFTKLCFEQD 180 (184)
Q Consensus 159 ~~~~l~~l~~~~-~~~~v~~n~~ 180 (184)
..+.+.++++.. ..+.||+..+
T Consensus 158 ~~~~~~~~l~~~~~~~ai~~~~d 180 (265)
T cd01543 158 EQEELAQWLQSLPKPVGIFACTD 180 (265)
T ss_pred HHHHHHHHHhcCCCCcEEEecCh
Confidence 244666776654 5888988754
No 90
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=69.35 E-value=20 Score=24.53 Aligned_cols=46 Identities=22% Similarity=0.214 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhcCCe---EEEEECCh-HHHHHHHHHHcCcceEEEee
Q psy17626 16 LLECLADLDRQLKSHGGQ---LFIVQGSP-ISIFQKLKRELNFTKLCFEQ 61 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~---L~v~~g~~-~~~l~~l~~~~~~~~v~~~~ 61 (184)
..+.+..+.+.+.+.|+. ..+..|+| .+.+...+.+.+++.|+.-.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~ 121 (154)
T COG0589 72 AEELLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGS 121 (154)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECC
Confidence 356677777888888855 57788999 69999999999999998875
No 91
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=69.20 E-value=16 Score=27.27 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
...++=+.|++.|.++.++.+.....+..+++..+++++|.|
T Consensus 89 g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~ 130 (219)
T TIGR00338 89 GAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFAN 130 (219)
T ss_pred CHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEee
Confidence 444455666778999999999988888889999999998865
No 92
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=67.99 E-value=13 Score=27.09 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=24.4
Q ss_pred HHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 145 LKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 145 L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
|.+.|+...|+.|.....+..-+++.||+++|-.
T Consensus 47 l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG 80 (170)
T COG1778 47 LLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQG 80 (170)
T ss_pred HHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeec
Confidence 4455777777777777777777777777777743
No 93
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=67.84 E-value=20 Score=27.07 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCeEEEEECChHHHHHHHHHHc---CcceEEEee
Q psy17626 21 ADLDRQLKSHGGQLFIVQGSPISIFQKLKREL---NFTKLCFEQ 61 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~---~~~~v~~~~ 61 (184)
.-|++.|++.|.++.|..+.+...+..+++.. ++.+|..++
T Consensus 101 e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~~i~t~ 144 (210)
T TIGR01545 101 ERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLNLIASQ 144 (210)
T ss_pred HHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCcEEEEE
Confidence 34445666678888888888888888888763 335555554
No 94
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=67.80 E-value=32 Score=26.48 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc----eEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT----KLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~----~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
.+.++=+.|++.|+++.|..+.+...+....+..++. .|+...+.... +--.+-+...+++.|+
T Consensus 112 gv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~-KP~p~~~~~a~~~~~~ 179 (248)
T PLN02770 112 GLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHA-KPHPDPYLKALEVLKV 179 (248)
T ss_pred cHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCC-CCChHHHHHHHHHhCC
Confidence 4566777778888999998888888888888877644 55555554321 2222344555555555
No 95
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=67.58 E-value=51 Score=24.92 Aligned_cols=159 Identities=16% Similarity=0.184 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECC-h---HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQGS-P---ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g~-~---~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
..|..+-+..+.+.+++.|..+.+..++ + .+.+..++...+++.|+....... + .+.+.+.+.|+++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~~~-----~-~~~~~~~~~~ipvV~~ 89 (270)
T cd06294 16 NPFFIEVLRGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYSRED-----D-PIIDYLKEEKFPFVVI 89 (270)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecCcCC-----c-HHHHHHHhcCCCEEEE
Confidence 3467777888888899999998887553 2 234555666667898887532111 1 2234456779999887
Q ss_pred cCceeecccccccccCCCCchh-HHHHHHHhhhcccccc----CcchhHHHHHHHHHHHHHHHhCCCe---EEEEeCC--
Q psy17626 89 VSHTLWDPEVVIQTNGNVPPLT-YKMYLHTVSCIGTMHI----GYNRFRFLLECLADLDRQLKSHGGQ---LFIVQGS-- 158 (184)
Q Consensus 89 ~~~~L~~p~~i~~~~~~~~~~v-~~~F~~~~~~~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~---L~v~~g~-- 158 (184)
+...- ++..+..- +.+.+.. .... +...+.+..+. +...........+.+.+.+++.|++ ..+..++
T Consensus 90 ~~~~~-~~~~~~~v-~~d~~~~g~~~~-~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~ 166 (270)
T cd06294 90 GKPED-DKENITYV-DNDNIQAGYDAT-EYLIKLGHKKIAFVGGDLDLEVTQDRLQGYKQALEDHGIPDRNEVIISLDFS 166 (270)
T ss_pred CCCCC-CCCCCCeE-EECcHHHHHHHH-HHHHHcCCccEEEecCCcccHHHHHHHHHHHHHHHHcCCCCCcceEEecCCc
Confidence 65321 10111110 0011111 1111 11111121111 1111122334566677778887752 1232222
Q ss_pred ---hhHHHHHHHHHc-CcCeEEEccc
Q psy17626 159 ---PISIFQKLKREL-NFTKLCFEQD 180 (184)
Q Consensus 159 ---~~~~l~~l~~~~-~~~~v~~n~~ 180 (184)
..+.+.+++++. ..+.||+..+
T Consensus 167 ~~~~~~~~~~~l~~~~~~~ai~~~~d 192 (270)
T cd06294 167 EEGGYKALKKLLEQHPRPTAIVATDD 192 (270)
T ss_pred hHHHHHHHHHHHhCCCCCCEEEECCh
Confidence 234555666554 4889988755
No 96
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=67.42 E-value=14 Score=27.80 Aligned_cols=43 Identities=12% Similarity=0.239 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHc-CcceEEEe
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKLCFE 60 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~-~~~~v~~~ 60 (184)
....++-+.|++.|+++.|+.|.....+..+++.. ....|++|
T Consensus 73 pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n 116 (214)
T TIGR03333 73 EGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCN 116 (214)
T ss_pred ccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEec
Confidence 44556666777777888887777777666666654 23455554
No 97
>PLN02954 phosphoserine phosphatase
Probab=67.14 E-value=11 Score=28.23 Aligned_cols=43 Identities=14% Similarity=0.353 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC--eEEEc
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT--KLCFE 178 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~--~v~~n 178 (184)
....++-+.|++.|+++.|+.+.....+..+++.+|++ .+|.|
T Consensus 87 pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~ 131 (224)
T PLN02954 87 PGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFAN 131 (224)
T ss_pred ccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEe
Confidence 45566666777889999999999999899999999997 56654
No 98
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=67.11 E-value=35 Score=26.10 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCeEEEEE-----CChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 21 ADLDRQLKSHGGQLFIVQ-----GSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~-----g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
.-+..+-+.+|+||+... .+-.+.+...+++.+++.|++-.-..-+-+. .+++.|++.|++..
T Consensus 48 ~~~~~qA~algipl~~~~~~g~~~~~~~~l~~~l~~~~v~~vv~GdI~~~~~r~---~~e~vc~~lGl~~~ 115 (218)
T PF01902_consen 48 ELIEAQAEALGIPLIEIPTSGDEEDYVEDLKEALKELKVEAVVFGDIDSEYQRN---WVERVCERLGLEAV 115 (218)
T ss_dssp TCHHHHHHHHT--EEEEEE---CCCHHHHHHHHHCTC--SEEE--TTS-HHHHH---HHHHHHHHCT-EEE
T ss_pred HHHHHHHHHCCCCEEEEEccCccchhhHHHHHHHHHcCCCEEEECcCCcHHHHH---HHHHHHHHcCCEEE
Confidence 344555567899998764 2334567777888999999887544333333 55667788898765
No 99
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=66.85 E-value=68 Score=26.79 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHhcC----------CeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHH
Q psy17626 12 RFRFLLECLADLDRQLKSHG----------GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWC 78 (184)
Q Consensus 12 r~~fl~~sL~~L~~~L~~~g----------~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l 78 (184)
|.+|...=..+++..|+..| .+++|...++.+++..|.+-.||..+.--..+.......-+.+.+.+
T Consensus 20 R~~fe~~L~~Ni~~~l~~~~~~~~~v~~~~~ri~v~~~~~~~~~~~l~~vfGI~~~s~~~~~~~~~~~i~~~~~~~~ 96 (381)
T PRK08384 20 RRWFENILMNNIREALVSEGIEFKKVEAKHGRILVKTNRAEEAVEVLTRVFGIVSLSPAMEIDAELEKINRTALKLF 96 (381)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccceEEEECCEEEEEcCCHHHHHHHHhhCCCceeEEEEEEeCCCHHHHHHHHHHHH
Confidence 78898888889999999886 44666544555678888888899877555555444333333333434
No 100
>PLN03194 putative disease resistance protein; Provisional
Probab=66.75 E-value=52 Score=24.62 Aligned_cols=96 Identities=9% Similarity=0.074 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCeEEEE-----ECChH-HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCceee
Q psy17626 21 ADLDRQLKSHGGQLFIV-----QGSPI-SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLW 94 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~-----~g~~~-~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~ 94 (184)
..|.+.|.+.|+..++- .|+.. ..|.+-+++..+.-|+++..|.......|+ +.+.++...+-+-.|. =+
T Consensus 44 shL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdE-L~~I~e~~~~ViPIFY---~V 119 (187)
T PLN03194 44 TLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHE-LALIMESKKRVIPIFC---DV 119 (187)
T ss_pred HHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHH-HHHHHHcCCEEEEEEe---cC
Confidence 56788888889887653 45553 467777888999999999999877667774 4444544333333332 26
Q ss_pred cccccccccCCC-CchhHHHHHHHhhh
Q psy17626 95 DPEVVIQTNGNV-PPLTYKMYLHTVSC 120 (184)
Q Consensus 95 ~p~~i~~~~~~~-~~~v~~~F~~~~~~ 120 (184)
+|.++.....+. .+.....|+.+...
T Consensus 120 dPsdVr~q~~~~~~~e~v~~Wr~AL~~ 146 (187)
T PLN03194 120 KPSQLRVVDNGTCPDEEIRRFNWALEE 146 (187)
T ss_pred CHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 888887742222 22334445444443
No 101
>PRK09982 universal stress protein UspD; Provisional
Probab=66.55 E-value=28 Score=24.12 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
..|+++.+.+...+....+..|+|.+.+.+++++.+++-|+...
T Consensus 68 ~~l~~~~~~~~~~~~~~~v~~G~p~~~I~~~A~~~~aDLIVmG~ 111 (142)
T PRK09982 68 NKLYKLTKNIQWPKTKLRIERGEMPETLLEIMQKEQCDLLVCGH 111 (142)
T ss_pred HHHHHHHHhcCCCcceEEEEecCHHHHHHHHHHHcCCCEEEEeC
Confidence 34555555544445667778899999999999999999988653
No 102
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=66.53 E-value=16 Score=31.91 Aligned_cols=46 Identities=22% Similarity=0.199 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 134 LLECLADLDRQLKSHG-GQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g-~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
+.....++=+.|++.| +++.++.|++......++++.|++++|.+.
T Consensus 385 ~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~~~ 431 (556)
T TIGR01525 385 LRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAEL 431 (556)
T ss_pred chHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeeccC
Confidence 4566677777788889 999999999999999999999999998753
No 103
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=66.46 E-value=20 Score=26.46 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhCCCeEE
Q psy17626 133 FLLECLADLDRQLKSHGGQLF 153 (184)
Q Consensus 133 fl~~~L~~L~~~L~~~g~~L~ 153 (184)
++-+++.++.... +.|++..
T Consensus 153 ~igD~~~Di~aA~-~~Gi~~i 172 (205)
T TIGR01454 153 MVGDAVTDLASAR-AAGTATV 172 (205)
T ss_pred EEcCCHHHHHHHH-HcCCeEE
Confidence 3445555554443 2366543
No 104
>KOG0207|consensus
Probab=66.43 E-value=31 Score=32.04 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=36.6
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHH
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHK 69 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~ 69 (184)
..|+++|++.+++.||.-..-...+++.+++.||++- .|..+.
T Consensus 733 ~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi~~V~aev--~P~~K~ 775 (951)
T KOG0207|consen 733 AELKSMGIKVVMLTGDNDAAARSVAQQVGIDNVYAEV--LPEQKA 775 (951)
T ss_pred HHHHhcCceEEEEcCCCHHHHHHHHHhhCcceEEecc--CchhhH
Confidence 4677889999999999999999999999999999975 454443
No 105
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=66.27 E-value=8.8 Score=28.86 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEee
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 61 (184)
...++-+.|++. +++.|+.|.....+..+++..+++.++.|+
T Consensus 72 ga~ell~~lk~~-~~~~IVS~~~~~~~~~il~~lgi~~~~an~ 113 (203)
T TIGR02137 72 GAVEFVDWLRER-FQVVILSDTFYEFSQPLMRQLGFPTLLCHK 113 (203)
T ss_pred cHHHHHHHHHhC-CeEEEEeCChHHHHHHHHHHcCCchhhcee
Confidence 445566667665 488888888888888888888888877753
No 106
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=66.18 E-value=10 Score=29.92 Aligned_cols=57 Identities=7% Similarity=0.100 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCceeeccccc
Q psy17626 42 ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99 (184)
Q Consensus 42 ~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i 99 (184)
.+.|++|.++++++-++.|-|.........+.+.+.|.+.|+.+.+.. ++.+|.+++
T Consensus 19 ~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~G-NH~~Dkge~ 75 (266)
T TIGR00282 19 KNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITMG-NHTWFQKLI 75 (266)
T ss_pred HHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEcc-chhccCcHH
Confidence 456788888888888888887764444456677778888899888875 666666664
No 107
>PLN02347 GMP synthetase
Probab=65.81 E-value=62 Score=28.36 Aligned_cols=77 Identities=6% Similarity=0.100 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECChH-HHHHHHHHH-c--CcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGSPI-SIFQKLKRE-L--NFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~~~-~~l~~l~~~-~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|+.+.+.++++.+.+.+.-+.-+.|-.. .++..++.+ . ++.+|+.+....+.. +.++.++..+++.|++++.++
T Consensus 213 ~~~~~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~~v~av~id~g~~~~~-E~~~~~~~~a~~lgi~~~vvd 291 (536)
T PLN02347 213 DVLEEQIELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYK-EQERVMETFKRDLHLPVTCVD 291 (536)
T ss_pred hHHHHHHHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCCcEEEEEEeCCCCChh-HHHHHHHHHHHHcCCcEEEEe
Confidence 47788899999988766656777777654 566677766 3 567788876555443 233333556677899887765
Q ss_pred Cc
Q psy17626 90 SH 91 (184)
Q Consensus 90 ~~ 91 (184)
-.
T Consensus 292 ~~ 293 (536)
T PLN02347 292 AS 293 (536)
T ss_pred Cc
Confidence 44
No 108
>PRK15005 universal stress protein F; Provisional
Probab=65.48 E-value=25 Score=24.10 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCC--CeEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 136 ECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 136 ~~L~~L~~~L~~~g--~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
+.|+++.+.+...| ....+..|++.+.+.+.+++.+++-|+...
T Consensus 70 ~~l~~~~~~~~~~~~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs 115 (144)
T PRK15005 70 SQLEEIIKKFKLPTDRVHVHVEEGSPKDRILELAKKIPADMIIIAS 115 (144)
T ss_pred HHHHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 44555555554434 356777899999999999999999988753
No 109
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=65.27 E-value=56 Score=25.33 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCceeeccccc
Q psy17626 40 SPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99 (184)
Q Consensus 40 ~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i 99 (184)
.+...+.+.++..|+++|..= +||-...++.+++.+++.|+++..+.+-.+-+..++
T Consensus 106 t~~~A~~~AL~alg~~RIalv---TPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~i 162 (239)
T TIGR02990 106 TPSSAAVDGLAALGVRRISLL---TPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREM 162 (239)
T ss_pred CHHHHHHHHHHHcCCCEEEEE---CCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCcee
Confidence 577788888888999999765 588888899999999999999988766444333333
No 110
>KOG1615|consensus
Probab=65.21 E-value=14 Score=27.94 Aligned_cols=44 Identities=16% Similarity=0.403 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe--EEEcc
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK--LCFEQ 179 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~--v~~n~ 179 (184)
..+.+|-+.|.+.|..+++++|.-...+.-.+.+.|+.. +|+|.
T Consensus 91 ~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~ 136 (227)
T KOG1615|consen 91 PGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANE 136 (227)
T ss_pred CCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhhe
Confidence 457788889999999999999998888888889999988 88875
No 111
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=65.11 E-value=44 Score=24.18 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc---eEEEeecccchhHHHHHHHHHHHHhCCCe-EEE
Q psy17626 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT---KLCFEQDCEALWHKRDKKVKKWCAENNIT-VKE 87 (184)
Q Consensus 12 r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~---~v~~~~~~~~~~~~rd~~v~~~l~~~gi~-~~~ 87 (184)
+..++.++|..|.++-.. ...++|..+...+...+++++.... .++.+.........+-..+.... +.+.+ +..
T Consensus 8 ~~~~l~~~l~sl~~q~~~-~~eiiivD~~s~d~t~~~~~~~~~~~~i~~~~~~~n~g~~~~~n~~~~~a~-~~~~d~v~~ 85 (202)
T cd04185 8 RLDLLKECLDALLAQTRP-PDHIIVIDNASTDGTAEWLTSLGDLDNIVYLRLPENLGGAGGFYEGVRRAY-ELGYDWIWL 85 (202)
T ss_pred CHHHHHHHHHHHHhccCC-CceEEEEECCCCcchHHHHHHhcCCCceEEEECccccchhhHHHHHHHHHh-ccCCCEEEE
Confidence 345788888888665322 4568888765555555555554433 23333333333444444444333 22333 333
Q ss_pred ecCceeeccccc
Q psy17626 88 FVSHTLWDPEVV 99 (184)
Q Consensus 88 ~~~~~L~~p~~i 99 (184)
.++...++|+-+
T Consensus 86 ld~D~~~~~~~l 97 (202)
T cd04185 86 MDDDAIPDPDAL 97 (202)
T ss_pred eCCCCCcChHHH
Confidence 355555555443
No 112
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=64.97 E-value=27 Score=25.18 Aligned_cols=43 Identities=9% Similarity=0.093 Sum_probs=30.4
Q ss_pred EECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHh
Q psy17626 37 VQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAE 80 (184)
Q Consensus 37 ~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~ 80 (184)
+.|+..+.++. ....++.+.++|.|.+...+..|.....|+.-
T Consensus 76 ilGdi~~tl~~-~~~~g~~a~laHaD~G~g~~~~d~a~a~~lsp 118 (160)
T PF12692_consen 76 ILGDIRETLPA-LARFGAGAALAHADIGTGDKEKDDATAAWLSP 118 (160)
T ss_dssp EES-HHHHHHH-HHHH-S-EEEEEE----S-HHHHHHHHHHHHH
T ss_pred eeccHHHHhHH-HHhcCCceEEEEeecCCCCcchhHHHHHhhhH
Confidence 35999999999 88899999999999999999999888888864
No 113
>PRK08005 epimerase; Validated
Probab=64.90 E-value=60 Score=24.70 Aligned_cols=128 Identities=9% Similarity=0.042 Sum_probs=74.8
Q ss_pred CeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCceeecccccccccCCCCchhH
Q psy17626 32 GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTY 111 (184)
Q Consensus 32 ~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~~~~~~~v~ 111 (184)
...++..-+|...++.+++ .+++.|.+|-|.+.+-. ++-+.+++.|++.-. -+.|. ++...+
T Consensus 61 ~DvHLMv~~P~~~i~~~~~-~gad~It~H~Ea~~~~~----~~l~~Ik~~G~k~Gl-----AlnP~--------Tp~~~i 122 (210)
T PRK08005 61 LSFHLMVSSPQRWLPWLAA-IRPGWIFIHAESVQNPS----EILADIRAIGAKAGL-----ALNPA--------TPLLPY 122 (210)
T ss_pred eEEEeccCCHHHHHHHHHH-hCCCEEEEcccCccCHH----HHHHHHHHcCCcEEE-----EECCC--------CCHHHH
Confidence 4445555688888888776 58899999988654322 234445666775321 22232 355566
Q ss_pred HHHHHHhhhcc--ccccCcchhHHHHHHHHHHHHHHHhCCCeEEEEeCChh-HHHHHHHHHcCcCeEEEc
Q psy17626 112 KMYLHTVSCIG--TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPI-SIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 112 ~~F~~~~~~~~--~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~-~~l~~l~~~~~~~~v~~n 178 (184)
..|........ ...+|..-+.|+..+++.+++--+-.....+-+.|... +.+. .+.+.|++.++..
T Consensus 123 ~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~-~l~~aGad~~V~G 191 (210)
T PRK08005 123 RYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAAR-LLAAAGAQHLVIG 191 (210)
T ss_pred HHHHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCCCHHHHH-HHHHCCCCEEEEC
Confidence 66655544332 24556667788888887776522111111344567665 4454 5567888876543
No 114
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=64.87 E-value=64 Score=25.03 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCeEEEEECChH-HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCcee
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPI-SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTL 93 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~-~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L 93 (184)
+..|.+-|++.+.-++.+.|-.. .++..++.+.+.+.+.++-++......-.+.+++.++..|++.+.+....+
T Consensus 2 ~~~l~~~l~~~~~vlVa~SGGvDSs~ll~la~~~g~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~~ 76 (252)
T TIGR00268 2 LENLRNFLKEFKKVLIAYSGGVDSSLLAAVCSDAGTEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKIDKM 76 (252)
T ss_pred hHHHHHHHHhcCCEEEEecCcHHHHHHHHHHHHhCCCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHHH
Confidence 35677778887777888888654 456667666644333333333211112224667778888998877765544
No 115
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=64.72 E-value=63 Score=24.90 Aligned_cols=73 Identities=12% Similarity=-0.045 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCc
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSH 91 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~ 91 (184)
..|..+-+..+.+.+++.|..+.+...+............+++.|...-... . +.. .+.+.+.|+++..++..
T Consensus 16 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~~-~----~~~-~~~~~~~~ipvV~~~~~ 88 (283)
T cd06279 16 DPVASQFLAGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGVPR-D----DPL-VAALLRRGLPVVVVDQP 88 (283)
T ss_pred CccHHHHHHHHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCCCC-C----hHH-HHHHHHcCCCEEEEecC
Confidence 3477778888899999999999888765433344455668899888864211 1 122 33456779998887653
No 116
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=64.49 E-value=54 Score=28.79 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEE
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 59 (184)
.....++=+.|++.|+++.++.|+.......++++.+++ ++.
T Consensus 407 ~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~-~~~ 448 (562)
T TIGR01511 407 RPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN-VRA 448 (562)
T ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc-EEc
Confidence 344556666778889999999999999999999999997 443
No 117
>PRK11175 universal stress protein UspE; Provisional
Probab=64.37 E-value=21 Score=28.17 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCe---EEEEECChHHHHHHHHHHcCcceEEEeecc-cchhHHH-HHHHHHHHHhCCCeEEEe
Q psy17626 21 ADLDRQLKSHGGQ---LFIVQGSPISIFQKLKRELNFTKLCFEQDC-EALWHKR-DKKVKKWCAENNITVKEF 88 (184)
Q Consensus 21 ~~L~~~L~~~g~~---L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~~r-d~~v~~~l~~~gi~~~~~ 88 (184)
..+++-+++.|++ .++..|++.+.|.+.+++.+++-|++...- ....+-. -....+.+....+++..+
T Consensus 226 ~~l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~pVLvv 298 (305)
T PRK11175 226 LAMKALRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCDLLAI 298 (305)
T ss_pred HHHHHHHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCCEEEE
Confidence 3444444455653 677889999999999999999999986531 1111111 123334455556766643
No 118
>PRK11590 hypothetical protein; Provisional
Probab=64.34 E-value=29 Score=25.98 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCeEEEEECChHHHHHHHHHHcC---cceEEEee
Q psy17626 22 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELN---FTKLCFEQ 61 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~---~~~v~~~~ 61 (184)
-|++.|++.|.++.|..+.+...+..+++..+ +++|..++
T Consensus 103 ~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t~ 145 (211)
T PRK11590 103 RLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPRVNLIASQ 145 (211)
T ss_pred HHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccccCceEEEE
Confidence 34355666777888888888877777777766 46666655
No 119
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=64.19 E-value=15 Score=28.36 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCC-eEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHH
Q psy17626 18 ECLADLDRQLKSHGG-QLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~r 70 (184)
.++..+-+...+.|+ .+.+.++++.+++..+...-.++.||.+.. +|.-++|
T Consensus 83 ~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP-DPWpKkR 135 (227)
T COG0220 83 PGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP-DPWPKKR 135 (227)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-CCCCCcc
Confidence 466777778888999 999999999999999999889999999964 4554444
No 120
>PRK10671 copA copper exporting ATPase; Provisional
Probab=64.04 E-value=59 Score=30.07 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 22 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
+.-+.|++.|+++.++.|+.......++++.+++.++..- .|..+ .+.+++. ...+-.+..+.|
T Consensus 657 ~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~~~~~~--~p~~K--~~~i~~l-~~~~~~v~~vGD 720 (834)
T PRK10671 657 AALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGV--LPDGK--AEAIKRL-QSQGRQVAMVGD 720 (834)
T ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCEEEeCC--CHHHH--HHHHHHH-hhcCCEEEEEeC
Confidence 3446678889999999999999999999999999988753 34332 2244433 333434444443
No 121
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=63.48 E-value=56 Score=24.05 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCe---EEEecCce
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNIT---VKEFVSHT 92 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~---~~~~~~~~ 92 (184)
+.+.-.+++..|+.++|+..+...-+..+++..++.-|+...- |..++-++ ++++.+++ +..+.|+.
T Consensus 51 ~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~K--P~~~~fr~----Al~~m~l~~~~vvmVGDqL 120 (175)
T COG2179 51 LRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKK--PFGRAFRR----ALKEMNLPPEEVVMVGDQL 120 (175)
T ss_pred HHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecccC--ccHHHHHH----HHHHcCCChhHEEEEcchh
Confidence 3344456788899999999999999999999999999988763 55554443 44444553 44444443
No 122
>PRK15456 universal stress protein UspG; Provisional
Probab=63.40 E-value=29 Score=23.90 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCC--eEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 135 LECLADLDRQLKSHGG--QLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
.+.|+++.+.+...|. ...+..|++.+.+.+++++++++-|+..
T Consensus 67 ~~~l~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG 112 (142)
T PRK15456 67 EERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAEELGADVVVIG 112 (142)
T ss_pred HHHHHHHHHHhCCCCcceEEEEcCCChHHHHHHHHhhcCCCEEEEc
Confidence 3445555555543333 5666789999999999999999988764
No 123
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=63.27 E-value=69 Score=24.87 Aligned_cols=50 Identities=22% Similarity=0.134 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEe-----CChhHHHHHHHHHcCcCeEEEcccc
Q psy17626 132 RFLLECLADLDRQLKSHGGQLFIVQ-----GSPISIFQKLKRELNFTKLCFEQDC 181 (184)
Q Consensus 132 ~fl~~~L~~L~~~L~~~g~~L~v~~-----g~~~~~l~~l~~~~~~~~v~~n~~~ 181 (184)
..+.++|..+..-.++.|+.|.+-. ....+.+.++++..+-..+-.+.|.
T Consensus 129 ~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~l~~~v~~~~~~~~~D~ 183 (284)
T PRK13210 129 QRFIEGLAWAVEQAAAAQVMLAVEIMDTPFMNSISKWKKWDKEIDSPWLTVYPDV 183 (284)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEecCccccCCHHHHHHHHHHcCCCceeEEecC
Confidence 4566777777777778888877743 1223445567777666666555544
No 124
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=63.24 E-value=48 Score=25.08 Aligned_cols=66 Identities=8% Similarity=0.011 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc----ceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+..+.++=+.|++.|.++.|....+.+.+....+..++ +.|+...+.... +---+-....+++.|+
T Consensus 95 ~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~-KP~p~~~~~~~~~~~~ 164 (224)
T PRK14988 95 REDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYP-KEDQRLWQAVAEHTGL 164 (224)
T ss_pred CCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCC-CCCHHHHHHHHHHcCC
Confidence 34566777788888889888888776666666665554 566666655421 1112234445555565
No 125
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=63.23 E-value=51 Score=25.88 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=40.5
Q ss_pred cCCeEEEEECChH----HHHHHHHHHcCcceEEEeeccc---chhHHHHHHHHHHHHhCCCeEEEecCceeecccccc
Q psy17626 30 HGGQLFIVQGSPI----SIFQKLKRELNFTKLCFEQDCE---ALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVI 100 (184)
Q Consensus 30 ~g~~L~v~~g~~~----~~l~~l~~~~~~~~v~~~~~~~---~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~ 100 (184)
-+..++|+.+... +.|.++++..+...++.+.+.. +....|...++.+ .+=-+...+..++++|+.+.
T Consensus 33 ~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A---~~d~l~flD~D~i~~~~~i~ 107 (281)
T PF10111_consen 33 PDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYA---RGDYLIFLDADCIPSPDFIE 107 (281)
T ss_pred CCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHc---CCCEEEEEcCCeeeCHHHHH
Confidence 4677888876443 4578888887777555555444 4456665544432 23234444666777776653
No 126
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=62.95 E-value=21 Score=23.79 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCeEEEE-ECChHHHHHHHHHH--cCcceEEEee
Q psy17626 20 LADLDRQLKSHGGQLFIV-QGSPISIFQKLKRE--LNFTKLCFEQ 61 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~-~g~~~~~l~~l~~~--~~~~~v~~~~ 61 (184)
|.....+|++.|+.|+++ .|++.. +.++++. +... ||++.
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~-~~~f~~~~~~p~~-ly~D~ 44 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEG-IEKFCELTGFPFP-LYVDP 44 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHH-HHHHHhccCCCCc-EEEeC
Confidence 567788889999998776 566645 8888855 4555 77665
No 127
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=62.88 E-value=58 Score=23.85 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcce
Q psy17626 21 ADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 56 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 56 (184)
.++=+.|++.|.++.|..+.+...+..+++..++..
T Consensus 112 ~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~ 147 (197)
T TIGR01548 112 KGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEI 147 (197)
T ss_pred HHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchh
Confidence 344455677788998888888888888888877654
No 128
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=62.79 E-value=15 Score=24.52 Aligned_cols=41 Identities=24% Similarity=0.440 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCeEEEEe-CChhHHHHHHHHHc--CcCeEEEccc
Q psy17626 138 LADLDRQLKSHGGQLFIVQ-GSPISIFQKLKREL--NFTKLCFEQD 180 (184)
Q Consensus 138 L~~L~~~L~~~g~~L~v~~-g~~~~~l~~l~~~~--~~~~v~~n~~ 180 (184)
|.....+|++.|+.|.++. |++.. +.++++.. ... ||++.+
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~-~~~f~~~~~~p~~-ly~D~~ 45 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEG-IEKFCELTGFPFP-LYVDPE 45 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHH-HHHHHhccCCCCc-EEEeCc
Confidence 5667788999999999886 55545 88888544 445 776554
No 129
>PTZ00445 p36-lilke protein; Provisional
Probab=62.36 E-value=64 Score=24.73 Aligned_cols=25 Identities=4% Similarity=0.025 Sum_probs=15.3
Q ss_pred EEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 152 LFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 152 L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
.+.+.+.+..+- -+++.|+..+.+.
T Consensus 181 ~LFIDD~~~NVe--aA~~lGi~ai~f~ 205 (219)
T PTZ00445 181 ILFIDDDMNNCK--NALKEGYIALHVT 205 (219)
T ss_pred eEeecCCHHHHH--HHHHCCCEEEEcC
Confidence 444555555543 3467888888765
No 130
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=62.34 E-value=14 Score=32.24 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 134 LLECLADLDRQLKSHGG-QLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
+.....++=+.|++.|+ ++.++.|++......++++.|++++|.+.
T Consensus 363 l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~ 409 (536)
T TIGR01512 363 PRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAEL 409 (536)
T ss_pred chHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhcc
Confidence 45666777777888899 99999999999999999999999988653
No 131
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=62.24 E-value=20 Score=25.40 Aligned_cols=45 Identities=11% Similarity=0.142 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 42 ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 42 ~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.+.+.+++++.+++.|+..-.. .+..+-.++-+.|++.||+++..
T Consensus 130 ~~~l~~~~~~~~id~v~ial~~--~~~~~i~~ii~~~~~~~v~v~~v 174 (175)
T PF13727_consen 130 LDDLPELVREHDIDEVIIALPW--SEEEQIKRIIEELENHGVRVRVV 174 (175)
T ss_dssp GGGHHHHHHHHT--EEEE--TT--S-HHHHHHHHHHHHTTT-EEEE-
T ss_pred HHHHHHHHHhCCCCEEEEEcCc--cCHHHHHHHHHHHHhCCCEEEEe
Confidence 4678999999999999998533 34556678888899999988753
No 132
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=62.20 E-value=20 Score=26.90 Aligned_cols=43 Identities=12% Similarity=0.239 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHc-CcCeEEEc
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKLCFE 178 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~-~~~~v~~n 178 (184)
....++-+.|.+.|+++.|+.+.....+..+++.+ ....+++|
T Consensus 73 pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n 116 (214)
T TIGR03333 73 EGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCN 116 (214)
T ss_pred ccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEec
Confidence 34455666677889999999999888888877776 45667665
No 133
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=62.14 E-value=48 Score=28.17 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC--ChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQG--SPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
-|-+=|..+.+++.+.|...+.... ++.+.+.+++++.++..|.........+. .+.+.|++.|+++..
T Consensus 48 ~ld~~l~~~~~~~~~~g~~v~~a~t~~eA~~~v~~i~~~~~~~~vv~~kS~~~eei----gl~~~L~~~g~~~~e 118 (432)
T TIGR00273 48 NLDFYLDQLKENVTQRGGHVYYAKTAEEARKIIGKVAQEKNGKKVVKSKSMVSEEI----GLNEVLEKIGIEVWE 118 (432)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHhCCCEEEEcCchHHHHh----CCHHHHHhCCCeeee
Confidence 3555667778888899999888754 56678999999999999999876543333 345566778887544
No 134
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=62.02 E-value=66 Score=24.23 Aligned_cols=158 Identities=17% Similarity=0.170 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECC----hHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQGS----PISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g~----~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
..|...-+..+.+.+++.|..+.+...+ ..+.+.++....+++.|+....... +..+ +.+.+.|+++..+
T Consensus 15 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~-----~~~~-~~~~~~~ipvV~~ 88 (268)
T cd06271 15 DPFFAEFLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTRPD-----DPRV-ALLLERGFPFVTH 88 (268)
T ss_pred CccHHHHHHHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCCCC-----ChHH-HHHHhcCCCEEEE
Confidence 3466777778888899999998887643 2345667766678998887643211 1122 3445679998887
Q ss_pred cCceeecccccccccCCCCchh-HHHHHHHhhhcccccc----CcchhHHHHHHHHHHHHHHHhCCCeE---EEEeCCh-
Q psy17626 89 VSHTLWDPEVVIQTNGNVPPLT-YKMYLHTVSCIGTMHI----GYNRFRFLLECLADLDRQLKSHGGQL---FIVQGSP- 159 (184)
Q Consensus 89 ~~~~L~~p~~i~~~~~~~~~~v-~~~F~~~~~~~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L---~v~~g~~- 159 (184)
+... +...+..- +.+.+.. +...... .+.+..+. +..........++.+.+.+++.|..+ .+..++.
T Consensus 89 ~~~~--~~~~~~~V-~~d~~~~~~~a~~~l-~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~ 164 (268)
T cd06271 89 GRTE--LGDPHPWV-DFDNEAAAYQAVRRL-IALGHRRIALLNPPEDLTFAQHRRAGYRRALAEAGLPLDPALIVSGDMT 164 (268)
T ss_pred CCcC--CCCCCCeE-eeCcHHHHHHHHHHH-HHcCCCcEEEecCccccchHHHHHHHHHHHHHHhCCCCCCceEEeCCCC
Confidence 5431 11111100 0011111 1111111 11111111 11111223445666777788777643 3333322
Q ss_pred ----hHHHHHHHHHc-CcCeEEEccc
Q psy17626 160 ----ISIFQKLKREL-NFTKLCFEQD 180 (184)
Q Consensus 160 ----~~~l~~l~~~~-~~~~v~~n~~ 180 (184)
.+.+.++.+.. ..+.||+..+
T Consensus 165 ~~~~~~~~~~~l~~~~~~~ai~~~~d 190 (268)
T cd06271 165 EEGGYAAAAELLALPDRPTAIVCSSE 190 (268)
T ss_pred hHHHHHHHHHHHhCCCCCCEEEEcCc
Confidence 24566666554 4888888765
No 135
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=61.96 E-value=56 Score=23.39 Aligned_cols=71 Identities=13% Similarity=0.006 Sum_probs=51.1
Q ss_pred HhcCCeEEEEECChHHHHHHHHHHc--CcceEEEeec-ccchhHHHHHHHHHHHHhCCCeEEEecCceeecccccccc
Q psy17626 28 KSHGGQLFIVQGSPISIFQKLKREL--NFTKLCFEQD-CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQT 102 (184)
Q Consensus 28 ~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~v~~~~~-~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~ 102 (184)
+++|..+.+++.+.+..|-+...+. +++.|+.|.. |+.+.. .++.++...++++.+++-..++..++++..
T Consensus 40 ~~~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~THtSi----Al~DAl~~~~~P~VEVHiSNi~aRE~fR~~ 113 (146)
T PRK05395 40 AELGVELEFFQSNHEGELIDRIHEARDGADGIIINPGAYTHTSV----ALRDALAAVSIPVIEVHLSNIHAREEFRHH 113 (146)
T ss_pred HHcCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHHHHHH----HHHHHHHcCCCCEEEEecCCcccccccccc
Confidence 3458999999988887766666554 5788999853 333333 455566677899999998888888776553
No 136
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=61.81 E-value=55 Score=23.25 Aligned_cols=71 Identities=10% Similarity=0.015 Sum_probs=48.1
Q ss_pred HhcCCeEEEEECChHHHHHHHHHHc--CcceEEEeec-ccchhHHHHHHHHHHHHhCCCeEEEecCceeecccccccc
Q psy17626 28 KSHGGQLFIVQGSPISIFQKLKREL--NFTKLCFEQD-CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQT 102 (184)
Q Consensus 28 ~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~v~~~~~-~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~ 102 (184)
.++|..+.+++.+.+..|-+...+. +++.|+.|.. |+.+.. .++.+++..++++.+++-..++..+.++..
T Consensus 39 ~~~g~~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~thtS~----Ai~DAl~~~~~P~vEVHiSNi~~RE~fR~~ 112 (140)
T PF01220_consen 39 AELGVEVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTHTSI----AIRDALKAISIPVVEVHISNIHAREEFRHH 112 (140)
T ss_dssp HHTTEEEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGHT-H----HHHHHHHCCTS-EEEEESS-GGGS-GGGG-
T ss_pred HHCCCeEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhccccH----HHHHHHHcCCCCEEEEEcCCcccccccccc
Confidence 4568999999999888777777664 5789999964 333333 455567777899999998888888877654
No 137
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=61.07 E-value=53 Score=23.98 Aligned_cols=54 Identities=9% Similarity=0.138 Sum_probs=36.8
Q ss_pred CCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 31 GGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 31 g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
|..|++-.-.-......+.. .+|..|++-..|.+.. ....+.|++.||+++.+.
T Consensus 101 g~tLYvTlePC~~Ca~aI~~-~gI~rVvy~~~~~~~~----~~~~~~L~~~Gi~v~~~~ 154 (168)
T PHA02588 101 GATMYVTASPCPDCAKAIAQ-SGIKKLVYCEKYDRNG----PGWDDILRKSGIEVIQIP 154 (168)
T ss_pred CcEEEEeCCCcHHHHHHHHH-hCCCEEEEeeccCCCc----HHHHHHHHHCCCEEEEeC
Confidence 56676654444555555554 7999999988766542 234667889999998754
No 138
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=60.92 E-value=51 Score=22.55 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECC-hHHHHHHHHHHcC
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQGS-PISIFQKLKRELN 53 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g~-~~~~l~~l~~~~~ 53 (184)
-++..+.++=+.|++.|.++.+..+. +.+....+.+..+
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence 46778888888889999999999988 7777767666655
No 139
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=60.71 E-value=26 Score=26.10 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHhCCCe
Q psy17626 134 LLECLADLDRQLKSHGGQ 151 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~ 151 (184)
+-++..++....+. |++
T Consensus 161 iGDs~~Di~aa~~a-G~~ 177 (214)
T PRK13288 161 VGDNHHDILAGKNA-GTK 177 (214)
T ss_pred ECCCHHHHHHHHHC-CCe
Confidence 44444444444332 444
No 140
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=60.70 E-value=41 Score=23.77 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=34.6
Q ss_pred ECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCceeec
Q psy17626 38 QGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWD 95 (184)
Q Consensus 38 ~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~ 95 (184)
.+.+.++|.+.+.+++ ..+++.. |..+++.+.+.||++..+.+..++.
T Consensus 83 ~~~aDe~i~~~a~~~~-~~iVaTn---------D~eLk~rlr~~GIPvi~lr~r~~~~ 130 (136)
T COG1412 83 GRYADECLLEAALKHG-RYIVATN---------DKELKRRLRENGIPVITLRQRKLLI 130 (136)
T ss_pred CCChHHHHHHHHHHcC-CEEEEeC---------CHHHHHHHHHcCCCEEEEeCCeEEE
Confidence 3567889999999998 3444444 3467777777899999888655543
No 141
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=60.43 E-value=76 Score=24.39 Aligned_cols=128 Identities=13% Similarity=0.162 Sum_probs=78.4
Q ss_pred eEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCceeecccccccccCCCCchhHH
Q psy17626 33 QLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYK 112 (184)
Q Consensus 33 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~~~~~~~v~~ 112 (184)
..++.--+|...++++++. +++.|.+|-|.++.-.+--+. .++.|++.-. .+.| ++|-..+.
T Consensus 65 DvHLMV~~p~~~i~~fa~a-gad~It~H~E~~~~~~r~i~~----Ik~~G~kaGv-----~lnP--------~Tp~~~i~ 126 (220)
T COG0036 65 DVHLMVENPDRYIEAFAKA-GADIITFHAEATEHIHRTIQL----IKELGVKAGL-----VLNP--------ATPLEALE 126 (220)
T ss_pred EEEEecCCHHHHHHHHHHh-CCCEEEEEeccCcCHHHHHHH----HHHcCCeEEE-----EECC--------CCCHHHHH
Confidence 3455556888888888774 689999988744433332233 3455765321 2223 24566667
Q ss_pred HHHHHhhhc--cccccCcchhHHHHHHHHHHHH---HHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 113 MYLHTVSCI--GTMHIGYNRFRFLLECLADLDR---QLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 113 ~F~~~~~~~--~~~~~~~~r~~fl~~~L~~L~~---~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
+|.....-. -.-++|..-+.|+..+|+.+++ -+.+.|..++-+.|.....-...+.+-|++.++..
T Consensus 127 ~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaG 197 (220)
T COG0036 127 PVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAG 197 (220)
T ss_pred HHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEE
Confidence 676655443 3455677778888877776654 44444533444667776656667788899887754
No 142
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=59.98 E-value=45 Score=26.17 Aligned_cols=74 Identities=8% Similarity=0.027 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcce----EEEeecccchhHHHHHHHHHHHHhCCCe---EEEec
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK----LCFEQDCEALWHKRDKKVKKWCAENNIT---VKEFV 89 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~----v~~~~~~~~~~~~rd~~v~~~l~~~gi~---~~~~~ 89 (184)
+..+.++-+.|++.|.++.|..+.+...+..+++..++.. |+...+. +..+-.-+.+...+++.|+. +..+.
T Consensus 103 ~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~-~~~Kp~p~~~~~~~~~~g~~~~~~l~IG 181 (272)
T PRK13223 103 YPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTL-PQKKPDPAALLFVMKMAGVPPSQSLFVG 181 (272)
T ss_pred CCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCC-CCCCCCcHHHHHHHHHhCCChhHEEEEC
Confidence 3455667777888899999999998888888887776643 4443332 22222224566666766763 44444
Q ss_pred Cc
Q psy17626 90 SH 91 (184)
Q Consensus 90 ~~ 91 (184)
|+
T Consensus 182 D~ 183 (272)
T PRK13223 182 DS 183 (272)
T ss_pred CC
Confidence 44
No 143
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=59.94 E-value=60 Score=23.06 Aligned_cols=71 Identities=11% Similarity=0.004 Sum_probs=50.6
Q ss_pred HhcCCeEEEEECChHHHHHHHHHHc--CcceEEEeec-ccchhHHHHHHHHHHHHhCCCeEEEecCceeecccccccc
Q psy17626 28 KSHGGQLFIVQGSPISIFQKLKREL--NFTKLCFEQD-CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQT 102 (184)
Q Consensus 28 ~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~v~~~~~-~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~ 102 (184)
.++|..+.+++.+.+..|-+...+. +++.|+.|.. |+.+.. .++.++...++++.+++-...+..+.++..
T Consensus 38 ~~~g~~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~THtSv----Ai~DAl~~~~~P~VEVHiSNi~aRE~fR~~ 111 (140)
T cd00466 38 AELGVEVEFFQSNHEGELIDWIHEARDGADGIIINPGAYTHTSI----ALRDALAAVSIPVIEVHISNIHAREEFRHH 111 (140)
T ss_pred HHcCCEEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHHHHH----HHHHHHHcCCCCEEEEecCCcccccccccc
Confidence 3459999999988887766666553 5788998853 233333 455666677899999998888888777554
No 144
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=59.90 E-value=27 Score=24.80 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=26.5
Q ss_pred HHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 142 DRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 142 ~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
-+.|++.|+.+.|+.+.+......+.+.++++.+|..
T Consensus 37 i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~~ 73 (154)
T TIGR01670 37 IRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQG 73 (154)
T ss_pred HHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEec
Confidence 3445566888888888777777777788888776653
No 145
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=59.82 E-value=11 Score=29.60 Aligned_cols=54 Identities=13% Similarity=0.018 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCceeecc
Q psy17626 43 SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDP 96 (184)
Q Consensus 43 ~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p 96 (184)
+.|++|.++++++-|++|-+-.....---.+..+.|-+.||.+.+-..|+.-..
T Consensus 17 ~~Lp~L~~~~~~DfVIaNgENaa~G~Git~~~~~~L~~~GvDviT~GNH~wdkk 70 (253)
T PF13277_consen 17 EHLPELKEEYGIDFVIANGENAAGGFGITPKIAEELFKAGVDVITMGNHIWDKK 70 (253)
T ss_dssp HHHHHHGG--G-SEEEEE-TTTTTTSS--HHHHHHHHHHT-SEEE--TTTTSST
T ss_pred HHHHHHHhhcCCCEEEECCcccCCCCCCCHHHHHHHHhcCCCEEecCcccccCc
Confidence 568888888889999998876655555555566666677888888766655433
No 146
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=59.66 E-value=29 Score=26.14 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHc---CcCeEEEcc
Q psy17626 134 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL---NFTKLCFEQ 179 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~---~~~~v~~n~ 179 (184)
.+..++.|++.|++.|.++.|+.+.+...+..+++.. ++.++.++.
T Consensus 96 ~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~~i~t~ 144 (210)
T TIGR01545 96 FPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLNLIASQ 144 (210)
T ss_pred CccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCcEEEEE
Confidence 4456666767788889999999999999999999874 446666543
No 147
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=59.66 E-value=70 Score=23.78 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC--h---HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGS--P---ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~--~---~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.|..+-...+++.++++|..+.+...+ + .+.+..+. ..+++.|........... ...+.+.||++..+
T Consensus 12 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~iii~~~~~~~~~------~~~~~~~~ipvv~~ 84 (264)
T cd06267 12 PFFAELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLL-SRRVDGIILAPSRLDDEL------LEELAALGIPVVLV 84 (264)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHH-HcCcCEEEEecCCcchHH------HHHHHHcCCCEEEe
Confidence 466667777888888889999888654 2 34455554 358888888654332211 33356779999887
Q ss_pred cCc
Q psy17626 89 VSH 91 (184)
Q Consensus 89 ~~~ 91 (184)
...
T Consensus 85 ~~~ 87 (264)
T cd06267 85 DRP 87 (264)
T ss_pred ccc
Confidence 654
No 148
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=59.56 E-value=56 Score=25.16 Aligned_cols=85 Identities=11% Similarity=0.074 Sum_probs=47.6
Q ss_pred EEEEECCh-HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec--------Cceeeccc-cccccc
Q psy17626 34 LFIVQGSP-ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV--------SHTLWDPE-VVIQTN 103 (184)
Q Consensus 34 L~v~~g~~-~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~--------~~~L~~p~-~i~~~~ 103 (184)
++++.|-. ..++..++.+.+-.-.-.+.+|+-....--+..++.+++.||+.+..+ +..|.+.+ +++...
T Consensus 6 vvl~SGG~DStt~l~~a~~~~~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~~~~~~~saLtd~~~~vp~~~ 85 (222)
T COG0603 6 VVLLSGGLDSTTCLAWAKKEGYEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDLLGEIGGSALTDDSIDVPKYE 85 (222)
T ss_pred EEEccCChhHHHHHHHHHhcCCEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhHHhhcCCCcCcCCCccccccc
Confidence 56677643 344555555543333344456764443333466667778888865443 45555554 555543
Q ss_pred --CCCCchhHHHHHHHh
Q psy17626 104 --GNVPPLTYKMYLHTV 118 (184)
Q Consensus 104 --~~~~~~v~~~F~~~~ 118 (184)
+.++|.+|.|+++..
T Consensus 86 ~~~~~~p~t~VP~RN~i 102 (222)
T COG0603 86 FAEEEIPATFVPARNLI 102 (222)
T ss_pred cccccCcceEeccccHH
Confidence 223677788777653
No 149
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=59.24 E-value=24 Score=27.14 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 54 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 54 (184)
.+.++=+.|++.|+++.|..+.+.+.+..+.+..++
T Consensus 103 g~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl 138 (253)
T TIGR01422 103 GVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAAL 138 (253)
T ss_pred CHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHh
Confidence 345666677777888888888877777777665544
No 150
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=59.21 E-value=58 Score=27.68 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCeEEE-EECChHH-HHHHHHHH-------cCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 21 ADLDRQLKSHGGQLFI-VQGSPIS-IFQKLKRE-------LNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v-~~g~~~~-~l~~l~~~-------~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
..|++.|+. |.++.| +.|.+.. +|..++.+ +.+..+++|....++.....+.+++.|++.||+++...
T Consensus 6 ~~l~~~l~~-~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~ 82 (436)
T PRK10660 6 LTLNRQLLT-SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVER 82 (436)
T ss_pred HHHHHhcCC-CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEE
Confidence 445555655 555444 5665543 44444432 35667777777666555556788889999999877654
No 151
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=59.17 E-value=80 Score=24.24 Aligned_cols=128 Identities=9% Similarity=0.146 Sum_probs=74.2
Q ss_pred CeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCceeecccccccccCCCCchhH
Q psy17626 32 GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTY 111 (184)
Q Consensus 32 ~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~~~~~~~v~ 111 (184)
...++..-+|...++.+++ .+++.|.+|-|.+.+- .++-+.+++.|++.-. -+.| +++...+
T Consensus 65 ~dvHLMv~~P~~~i~~~~~-~gad~I~~H~Ea~~~~----~~~l~~Ir~~g~k~Gl-----alnP--------~T~~~~i 126 (223)
T PRK08745 65 IDVHLMVEPVDRIVPDFAD-AGATTISFHPEASRHV----HRTIQLIKSHGCQAGL-----VLNP--------ATPVDIL 126 (223)
T ss_pred EEEEeccCCHHHHHHHHHH-hCCCEEEEcccCcccH----HHHHHHHHHCCCceeE-----EeCC--------CCCHHHH
Confidence 3345555688888888876 5899999998865332 2233445666764321 1222 2355556
Q ss_pred HHHHHHhhhcc--ccccCcchhHHHHHHHHHHH---HHHHhCCCeEEE-EeCChh-HHHHHHHHHcCcCeEEEc
Q psy17626 112 KMYLHTVSCIG--TMHIGYNRFRFLLECLADLD---RQLKSHGGQLFI-VQGSPI-SIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 112 ~~F~~~~~~~~--~~~~~~~r~~fl~~~L~~L~---~~L~~~g~~L~v-~~g~~~-~~l~~l~~~~~~~~v~~n 178 (184)
..+........ ...+|..-+.|+..+++.++ +-+.+.|....+ +.|... +.+. .+.+.|++.++..
T Consensus 127 ~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~-~l~~aGaDi~V~G 199 (223)
T PRK08745 127 DWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIG-AIAAAGADTFVAG 199 (223)
T ss_pred HHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHH-HHHHcCCCEEEEC
Confidence 66655544332 23456666778777666654 445555544333 456554 5555 5567888877653
No 152
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=59.08 E-value=20 Score=32.38 Aligned_cols=45 Identities=11% Similarity=0.115 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEccc
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~ 180 (184)
....+.=++|++.|+...++.||....-..++++.|++++|.+..
T Consensus 448 ~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~ 492 (679)
T PRK01122 448 PGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEAT 492 (679)
T ss_pred hhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCC
Confidence 455555667888899999999999999999999999999987643
No 153
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=58.75 E-value=34 Score=22.64 Aligned_cols=42 Identities=17% Similarity=0.159 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcce
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 56 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 56 (184)
-.+..|.++.+++++.|..++.+.-++.+.+.++.++.+..-
T Consensus 43 ~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~ 84 (124)
T PF00578_consen 43 AELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPF 84 (124)
T ss_dssp HHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSS
T ss_pred cchhHHHHHhhhhccceEEeeecccccccchhhhhhhhcccc
Confidence 345568888889998899999998888889999999888653
No 154
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=58.74 E-value=42 Score=24.47 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=42.3
Q ss_pred HHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCe---EEEecCc
Q psy17626 26 QLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNIT---VKEFVSH 91 (184)
Q Consensus 26 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~---~~~~~~~ 91 (184)
.|++.|.++.|..+.+...+..+++.+++..++... .|. -+.+..++++.|+. +..+.|.
T Consensus 45 ~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~~~--kpk----p~~~~~~~~~l~~~~~ev~~iGD~ 107 (169)
T TIGR02726 45 VLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHEGI--KKK----TEPYAQMLEEMNISDAEVCYVGDD 107 (169)
T ss_pred HHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEecC--CCC----HHHHHHHHHHcCcCHHHEEEECCC
Confidence 456779999999999999999999999999776532 111 23566666766653 4444443
No 155
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=58.48 E-value=48 Score=22.01 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEE---eCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 134 LLECLADLDRQLKSHGGQLFIV---QGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~---~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
..+.+..+.+.+.+.|++.... .|++.+.+.+++++++++-|+.-.
T Consensus 54 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~ 102 (132)
T cd01988 54 ARKLLRQAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGW 102 (132)
T ss_pred HHHHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEec
Confidence 4456666667777778774432 478888999999999999888754
No 156
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=58.40 E-value=38 Score=24.92 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEE
Q psy17626 134 LLECLADLDRQLKSHGGQLFIV 155 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~ 155 (184)
+-++..++...- +.|++...+
T Consensus 164 igDs~~d~~aa~-~aG~~~i~v 184 (213)
T TIGR01449 164 VGDSRVDIQAAR-AAGCPSVLL 184 (213)
T ss_pred eCCCHHHHHHHH-HCCCeEEEE
Confidence 334444443332 236664444
No 157
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=58.29 E-value=1.2e+02 Score=27.01 Aligned_cols=100 Identities=14% Similarity=0.191 Sum_probs=56.7
Q ss_pred CcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCceeecccccc----------cccCCCCchhHHHHHHHhhhcc
Q psy17626 53 NFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVI----------QTNGNVPPLTYKMYLHTVSCIG 122 (184)
Q Consensus 53 ~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~----------~~~~~~~~~v~~~F~~~~~~~~ 122 (184)
++.-+|.++ +.....--+.+.+.+++.|+.+....-.- +++.++. +...|++|.....|+.......
T Consensus 60 ~i~IlygSq--TGnae~~A~~l~~~l~~~g~~~~v~~~~d-~~~~~l~~~~~li~v~ST~GeGe~Pdna~~F~~~L~~~~ 136 (597)
T TIGR01931 60 RVTILYGSQ--TGNARRLAKRLAEKLEAAGFSVRLSSADD-YKFKQLKKERLLLLVISTQGEGEPPEEAISFHKFLHSKK 136 (597)
T ss_pred eEEEEEECC--chHHHHHHHHHHHHHHhCCCccEEechHH-CCHhhcccCceEEEEeCCCCCCcCCHHHHHHHHHHHhCC
Confidence 344444443 34455555566666766666544332111 1222221 1123479988888876554322
Q ss_pred cc----------ccCcchhHHHHHHHHHHHHHHHhCCCeEEEE
Q psy17626 123 TM----------HIGYNRFRFLLECLADLDRQLKSHGGQLFIV 155 (184)
Q Consensus 123 ~~----------~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~ 155 (184)
.+ ..|.....+....-..+++.|+++|..-++-
T Consensus 137 ~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~ 179 (597)
T TIGR01931 137 APKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLP 179 (597)
T ss_pred CcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeec
Confidence 22 1344555677888999999999999876553
No 158
>PRK09004 FMN-binding protein MioC; Provisional
Probab=58.12 E-value=64 Score=22.79 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=40.5
Q ss_pred CCCchhHHHHHHHhhhccc---------cccCcchhHHHHHHHHHHHHHHHhCCCeEEEE----eC----ChhHHHHHHH
Q psy17626 105 NVPPLTYKMYLHTVSCIGT---------MHIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QG----SPISIFQKLK 167 (184)
Q Consensus 105 ~~~~~v~~~F~~~~~~~~~---------~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~----~g----~~~~~l~~l~ 167 (184)
|++|.....|+........ -..|.............+++.|+++|...+.- .. .+.+.+..++
T Consensus 60 Ge~p~~~~~f~~~L~~~~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~ 139 (146)
T PRK09004 60 GDLPDNLQPFFEELQEQKPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWL 139 (146)
T ss_pred CCCChhHHHHHHHHHhcCCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHH
Confidence 4788888888775544211 11233344456677888999999999875542 21 2456667776
Q ss_pred HH
Q psy17626 168 RE 169 (184)
Q Consensus 168 ~~ 169 (184)
++
T Consensus 140 ~~ 141 (146)
T PRK09004 140 KS 141 (146)
T ss_pred HH
Confidence 65
No 159
>PRK11590 hypothetical protein; Provisional
Probab=57.85 E-value=28 Score=26.04 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcC---cCeEEEcc
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN---FTKLCFEQ 179 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~---~~~v~~n~ 179 (184)
+...+-|++.|++.|..+.|..+.+...+..+++..+ ++++.+.+
T Consensus 98 pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t~ 145 (211)
T PRK11590 98 PVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPRVNLIASQ 145 (211)
T ss_pred ccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccccCceEEEE
Confidence 3455556667777899999999999998888988888 47777654
No 160
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=57.55 E-value=31 Score=31.16 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 134 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
+.....+.=+.|++.|+...++.||.......++++.|+++++.+.
T Consensus 447 ~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~a~~ 492 (675)
T TIGR01497 447 VKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFIAEA 492 (675)
T ss_pred chhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEEcCC
Confidence 3445556666778889999999999999999999999999998764
No 161
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=57.32 E-value=1.4e+02 Score=28.45 Aligned_cols=119 Identities=11% Similarity=0.083 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCeEEEEECChH-------------------HHHHHHHHHcCcceEEEeecccc-hhHHHHHHHHHHHHhC
Q psy17626 22 DLDRQLKSHGGQLFIVQGSPI-------------------SIFQKLKRELNFTKLCFEQDCEA-LWHKRDKKVKKWCAEN 81 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v~~g~~~-------------------~~l~~l~~~~~~~~v~~~~~~~~-~~~~rd~~v~~~l~~~ 81 (184)
++-+.|+++|...+++..+|. +.+.+++++.+++.|+..-+... .....+...+..+++.
T Consensus 31 q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~ 110 (1050)
T TIGR01369 31 QACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEKY 110 (1050)
T ss_pred HHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHC
Confidence 446677888999999887773 35666677777777765332111 1112222223455666
Q ss_pred CCeEEEecCceeecccccccccCCCCchhHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy17626 82 NITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ 156 (184)
Q Consensus 82 gi~~~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~~~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~ 156 (184)
||++.- -++..+....+ -..|+....+.+.|-++. ....+.+++.+..+++|-|+.|..
T Consensus 111 Gv~~~G------~~~~ai~~~~D------K~~~k~~l~~~Gipvp~~----~~v~s~~e~~~~~~~igyPvIVKP 169 (1050)
T TIGR01369 111 GVEVLG------TPVEAIKKAED------RELFREAMKEIGEPVPES----EIAHSVEEALAAAKEIGYPVIVRP 169 (1050)
T ss_pred CCEEEC------CCHHHHHHhCC------HHHHHHHHHHCCCCCCCe----eecCCHHHHHHHHHHhCCCeEEEC
Confidence 665542 12222211111 112333344444433221 234456666666677788887753
No 162
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=57.19 E-value=26 Score=26.42 Aligned_cols=41 Identities=27% Similarity=0.280 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEE
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 176 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~ 176 (184)
..+.++=..|.+.|++|.|+.+.+...+..+++.+|+...|
T Consensus 92 ~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F 132 (220)
T COG0546 92 PGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYF 132 (220)
T ss_pred CCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcccc
Confidence 34555666777889999999999999999999999988776
No 163
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=56.85 E-value=1.1e+02 Score=28.66 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
....+.-++|++.|++..++.||....-..++++.|+.
T Consensus 553 ~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~ 590 (903)
T PRK15122 553 ESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLE 590 (903)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 34455666778889999999999999999999999997
No 164
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=56.84 E-value=29 Score=28.97 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHH-HHHHHHHHhCC-CeEEE
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD-KKVKKWCAENN-ITVKE 87 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd-~~v~~~l~~~g-i~~~~ 87 (184)
+..-|++.|...|+...+......+.+.+..+. +...||++---.|...-.| +++.+..++.| +.+..
T Consensus 107 t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vV 176 (386)
T PF01053_consen 107 TYRLLEELLPRFGVEVTFVDPTDLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVV 176 (386)
T ss_dssp HHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEE
T ss_pred chhhhhhhhcccCcEEEEeCchhHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEe
Confidence 334456667888999988877667778877776 6777777766667666666 78888888888 65543
No 165
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=56.67 E-value=1.1e+02 Score=24.86 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECChH-HHHHHHHHH-c--CcceEEEeecccchhHHHHHHHHHHHH-hCCCeEEEec
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQGSPI-SIFQKLKRE-L--NFTKLCFEQDCEALWHKRDKKVKKWCA-ENNITVKEFV 89 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g~~~-~~l~~l~~~-~--~~~~v~~~~~~~~~~~~rd~~v~~~l~-~~gi~~~~~~ 89 (184)
|+-+.+..|++.+.+ +.-++-+.|... .++..++.+ . ++.+|+++....+. ...+.+.+.+. +.|++++..+
T Consensus 2 ~~~~~~~~l~~~v~~-~kVvValSGGVDSsvla~ll~~~~G~~v~av~vd~G~~~~--~E~e~~~~~~~~~lgi~~~vvd 78 (311)
T TIGR00884 2 FIEEAVEEIREQVGD-AKVIIALSGGVDSSVAAVLAHRAIGDRLTCVFVDHGLLRK--GEAEQVVKTFGDRLGLNLVYVD 78 (311)
T ss_pred hHHHHHHHHHHHhCC-CcEEEEecCChHHHHHHHHHHHHhCCCEEEEEEeCCCCCh--HHHHHHHHHHHHHcCCcEEEEe
Confidence 677888999998875 444566677543 455556644 2 56677777655432 23345555544 6899988766
Q ss_pred Cc
Q psy17626 90 SH 91 (184)
Q Consensus 90 ~~ 91 (184)
..
T Consensus 79 ~~ 80 (311)
T TIGR00884 79 AK 80 (311)
T ss_pred Cc
Confidence 54
No 166
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=56.58 E-value=59 Score=21.97 Aligned_cols=41 Identities=22% Similarity=0.232 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECCh--------HHHHHHHHHHcCcc
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQGSP--------ISIFQKLKRELNFT 55 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g~~--------~~~l~~l~~~~~~~ 55 (184)
-++..+.++=+.|++.|.++.|+.+.+ .+.+..+++..+..
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 345666666677777899999998877 66677777776664
No 167
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=56.56 E-value=39 Score=22.17 Aligned_cols=45 Identities=20% Similarity=0.173 Sum_probs=32.5
Q ss_pred CChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHH-hCCCeEEEecCcee
Q psy17626 39 GSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCA-ENNITVKEFVSHTL 93 (184)
Q Consensus 39 g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~-~~gi~~~~~~~~~L 93 (184)
+.+.+.|..++.+.+. .+++.. |..+++.+. ..||++..+..+.+
T Consensus 51 ~~addci~~~~~~~~~-~~VaT~---------D~~Lr~~lr~~~GvPvi~l~~~~~ 96 (101)
T PF04900_consen 51 GSADDCILDLAGKNNK-YIVATQ---------DKELRRRLRKIPGVPVIYLRRNVL 96 (101)
T ss_pred cCHHHHHHHHhccCCe-EEEEec---------CHHHHHHHhcCCCCCEEEEECCEE
Confidence 4678899999988776 566655 345666666 78999887765544
No 168
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=56.56 E-value=26 Score=26.33 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
...++-..|++. +++.|++|.....+..++++.|++++|+|+
T Consensus 72 ga~ell~~lk~~-~~~~IVS~~~~~~~~~il~~lgi~~~~an~ 113 (203)
T TIGR02137 72 GAVEFVDWLRER-FQVVILSDTFYEFSQPLMRQLGFPTLLCHK 113 (203)
T ss_pred cHHHHHHHHHhC-CeEEEEeCChHHHHHHHHHHcCCchhhcee
Confidence 344455555554 488999998888888899999999888863
No 169
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=56.54 E-value=23 Score=31.88 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
....+.=++|++.|+...++.||....-..++++.|++.+|.+.
T Consensus 444 ~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~ 487 (673)
T PRK14010 444 DGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAEC 487 (673)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCC
Confidence 44555556777889999999999999999999999999998764
No 170
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=56.52 E-value=25 Score=26.42 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHc
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 52 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 52 (184)
...++=+.|++.|+++.|+.+.....+..+++..
T Consensus 78 G~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 78 GFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 4445666666777777777777666666666654
No 171
>PF08765 Mor: Mor transcription activator family; InterPro: IPR014875 Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N-terminal region of Mor is the dimerisation region, and the C-terminal contains a helix-turn-helix motif which binds DNA []. ; PDB: 1RR7_A.
Probab=56.39 E-value=57 Score=21.75 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhcC-CeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHH
Q psy17626 14 RFLLECLADLDRQLKSHG-GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCA 79 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g-~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~ 79 (184)
..|.+-.......|.+.| +.=.+..-=..++...|++.++-..||+-.........|+..|.+-++
T Consensus 5 e~l~~l~~~i~~~l~~~g~i~~~~a~~ig~~~~~~L~~~~gG~~iyiP~~~~~~~~~R~~~I~~~f~ 71 (108)
T PF08765_consen 5 ELLSELADVIAAELERLGEIDAELAEIIGEEVALKLCRYFGGQQIYIPKCDRLLRALRNREIRREFN 71 (108)
T ss_dssp HHHHHHHHHHHHHHHHTS-S-----TTSHHHHHHHHHHHH-SS------SHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHCCEeEEeeCccHHHHHHHHHHHHHHhC
Confidence 344555555677778878 553344444678899999999999999988766667778877776554
No 172
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=56.32 E-value=37 Score=25.42 Aligned_cols=22 Identities=18% Similarity=0.545 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCCeEEEEECChH
Q psy17626 21 ADLDRQLKSHGGQLFIVQGSPI 42 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~g~~~ 42 (184)
..|.+.|.++|...+++.|+..
T Consensus 41 ~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 41 NALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred HHHHHHHHHcCCeEEEecChhH
Confidence 3678889999999999988754
No 173
>PRK05434 phosphoglyceromutase; Provisional
Probab=56.19 E-value=1.2e+02 Score=26.50 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCCeEEEE----EC------ChHHHHHHHHHHcCcceEEEe-----ecccch-hHHHHHHHHHHHHhC
Q psy17626 18 ECLADLDRQLKSHGGQLFIV----QG------SPISIFQKLKRELNFTKLCFE-----QDCEAL-WHKRDKKVKKWCAEN 81 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~----~g------~~~~~l~~l~~~~~~~~v~~~-----~~~~~~-~~~rd~~v~~~l~~~ 81 (184)
+.|.++-+..++.|..|+++ .| +-...|.+++++.+++.|+.| +|..|. ...--+.+.+.+++.
T Consensus 96 ~~~~~~~~~~~~~~~~lHl~GL~SdggVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~i~~l~~~~~~~ 175 (507)
T PRK05434 96 PALLDAIDKAKKNGGALHLMGLLSDGGVHSHIDHLFALLELAKEEGVKKVYVHAFLDGRDTPPKSALGYLEELEAKLAEL 175 (507)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeccCCCcccHHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHHh
Confidence 45666667777789999986 23 345567788888999888888 455555 334446777777776
Q ss_pred CC-eEEEecCcee
Q psy17626 82 NI-TVKEFVSHTL 93 (184)
Q Consensus 82 gi-~~~~~~~~~L 93 (184)
|+ ++-+..+++.
T Consensus 176 ~~~~iasv~GRyy 188 (507)
T PRK05434 176 GVGRIASVSGRYY 188 (507)
T ss_pred CCeeEEEEecccc
Confidence 75 6666666543
No 174
>cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases. XPG is a eukaryotic enzyme that functions in nucleotide-excision repair and transcription-coupled repair of oxidative DNA damage. Functionally/structurally related to FEN-1; divalent metal ion-dependent exo- and endonuclease, and bacterial and bacteriophage 5'3' exonucleases.
Probab=56.16 E-value=29 Score=27.91 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
.+.+..+.+-|...|++.++..+++.+.+..|++.-.+..|+++
T Consensus 127 ~~~~~~~~~lL~~~gi~~i~ap~EAdaq~a~l~~~g~v~~i~S~ 170 (316)
T cd00128 127 PQMIEEAKELLRLMGIPYIVAPYEAEAQCAYLAKKGLVDAIITE 170 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEECCcCHHHHHHHHHhCCCeeEEEec
Confidence 45567788889999999999889999999999887777788775
No 175
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=56.10 E-value=1.1e+02 Score=28.71 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
....+.-++|++.|++..++.||....-..++++.|++
T Consensus 553 ~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~ 590 (902)
T PRK10517 553 ETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLD 590 (902)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 34455666778889999999999999999999999996
No 176
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=55.99 E-value=81 Score=23.34 Aligned_cols=54 Identities=17% Similarity=0.368 Sum_probs=41.5
Q ss_pred EEEEECC-hHHHHHHHHHH-cCcceEEEeecccch--hHHHHHHHHHHHHhCCCeEEE
Q psy17626 34 LFIVQGS-PISIFQKLKRE-LNFTKLCFEQDCEAL--WHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 34 L~v~~g~-~~~~l~~l~~~-~~~~~v~~~~~~~~~--~~~rd~~v~~~l~~~gi~~~~ 87 (184)
|++-.|. ....+..|.++ ++++-.|+|--+-|. ..+|-+.+++.+++.||++..
T Consensus 3 LH~CCaPCs~~~~~~L~~~g~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~ 60 (176)
T PF02677_consen 3 LHICCAPCSTYPLERLREEGFDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIE 60 (176)
T ss_pred eeecCccccHHHHHHHHHCCCCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEe
Confidence 4555553 45677888887 899999999988886 466667899999999998775
No 177
>PRK08238 hypothetical protein; Validated
Probab=55.96 E-value=55 Score=28.23 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc-ceEEEeecccch--hHHHHHHHHHHHHhCCC
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF-TKLCFEQDCEAL--WHKRDKKVKKWCAENNI 83 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~-~~v~~~~~~~~~--~~~rd~~v~~~l~~~gi 83 (184)
+...++=+++++.|.++.+..+.+...+..+++..++ +.|+..++.... +.+. +.+.+.+.+.|+
T Consensus 75 pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGlFd~Vigsd~~~~~kg~~K~-~~l~~~l~~~~~ 142 (479)
T PRK08238 75 EEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGLFDGVFASDGTTNLKGAAKA-AALVEAFGERGF 142 (479)
T ss_pred hhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCEEEeCCCccccCCchHH-HHHHHHhCccCe
Confidence 4566667778889999999999999999999999996 888888765322 2222 345555544443
No 178
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=55.87 E-value=27 Score=22.99 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCc----CeEEEcc
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQ 179 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~n~ 179 (184)
..+.++-+.|++.|.++.++.+.....+..+.+..++ +.++...
T Consensus 27 ~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~ 74 (139)
T cd01427 27 PGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSN 74 (139)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccc
Confidence 3344555666667999999999888888888888877 4555433
No 179
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=55.79 E-value=23 Score=27.26 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHHHHcCcCeEEEccc
Q psy17626 135 LECLADLDRQLKSHGG-QLFIVQGSPISIFQKLKRELNFTKLCFEQD 180 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~ 180 (184)
..++..+-+...++|+ .+.++.+|+..++..+...-.++.||.|--
T Consensus 82 ~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 82 VPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred hHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 4678888888889999 999999999999999988778999998854
No 180
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=55.57 E-value=53 Score=24.40 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcC
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 53 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~ 53 (184)
+.++-+.|++.|+++.|+.+.....+....+..+
T Consensus 92 ~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~ 125 (220)
T TIGR03351 92 AEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLG 125 (220)
T ss_pred HHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhh
Confidence 4455666766777777777776666666555544
No 181
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=55.16 E-value=23 Score=28.00 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeeccc
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~ 64 (184)
.....++-+.|++.|.++.|..|.+......+++..+...+++...++
T Consensus 189 ~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~ 236 (300)
T PHA02530 189 NPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIG 236 (300)
T ss_pred ChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhC
Confidence 556667777888889999999999988888888877776655544333
No 182
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=55.12 E-value=73 Score=22.57 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc----ceEEEeecc
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDC 63 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~ 63 (184)
.+.++=+.|++.|.++.|+.+.+... ..+..+.++ +.|++..+.
T Consensus 89 g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~~~~ 136 (183)
T TIGR01509 89 GVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFSGDV 136 (183)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEcCCC
Confidence 34555567777788888888777665 444444554 455554443
No 183
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=54.39 E-value=54 Score=23.56 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECC
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGS 40 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~ 40 (184)
++..+.++=+.|++.|.++.|+...
T Consensus 30 ~~pgv~e~L~~L~~~g~~l~IvSN~ 54 (161)
T TIGR01261 30 FEKGVIPALLKLKKAGYKFVMVTNQ 54 (161)
T ss_pred ECCCHHHHHHHHHHCCCeEEEEeCC
Confidence 4455555556666667777777543
No 184
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=54.26 E-value=92 Score=23.48 Aligned_cols=74 Identities=9% Similarity=0.048 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECC--h---HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQGS--P---ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g~--~---~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
-.|..+-+..+++.+++.|..+.+...+ . ...+.+.....+++.|+..-.... +....+.+.+.|+++..
T Consensus 11 ~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~-----~~~~~~~~~~~~ipvv~ 85 (270)
T cd01545 11 PGYVSEIQLGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSD-----NPELLDLLDEAGVPYVR 85 (270)
T ss_pred cccHHHHHHHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCC-----ccHHHHHHHhcCCCEEE
Confidence 3577788888888899999998887543 2 234555566678999988632111 11223345667999988
Q ss_pred ecCc
Q psy17626 88 FVSH 91 (184)
Q Consensus 88 ~~~~ 91 (184)
++..
T Consensus 86 i~~~ 89 (270)
T cd01545 86 IAPG 89 (270)
T ss_pred EecC
Confidence 7643
No 185
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=54.13 E-value=35 Score=27.75 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
...++=+.|++.|.++.|+.|........+.++.++++++.|.
T Consensus 185 Ga~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~ 227 (322)
T PRK11133 185 GLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANE 227 (322)
T ss_pred hHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeE
Confidence 3455667788899999999998877777788889999988763
No 186
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=54.13 E-value=68 Score=22.20 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC----eEEEccccc
Q psy17626 139 ADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT----KLCFEQDCE 182 (184)
Q Consensus 139 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~----~v~~n~~~~ 182 (184)
.++=..|++.|+++.++.+.+...+...++.+++. .+++..+++
T Consensus 83 ~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~ 130 (176)
T PF13419_consen 83 RELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVG 130 (176)
T ss_dssp HHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSS
T ss_pred hhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhh
Confidence 34445556669999999988888788888888755 666655543
No 187
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=54.13 E-value=1.1e+02 Score=25.19 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChH-------HHHHHHHHHcCcceEEEe-ecccchhHHHHHHHHHHHHhCCCe-EEE
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPI-------SIFQKLKRELNFTKLCFE-QDCEALWHKRDKKVKKWCAENNIT-VKE 87 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~-------~~l~~l~~~~~~~~v~~~-~~~~~~~~~rd~~v~~~l~~~gi~-~~~ 87 (184)
..++.+|.+.+++.|.+.+|+.|... +.+.+.+++.+++...++ -...|....-+ ++.+.+++.++. +..
T Consensus 11 ~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~-~~~~~~~~~~~D~Iia 89 (380)
T cd08185 11 AGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVM-EGAALAREEGCDFVVG 89 (380)
T ss_pred cCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHH-HHHHHHHHcCCCEEEE
Confidence 35677787888877878777776432 345555566677665554 22233333333 344445556665 344
Q ss_pred ecCceeecccc
Q psy17626 88 FVSHTLWDPEV 98 (184)
Q Consensus 88 ~~~~~L~~p~~ 98 (184)
+.+...+|-.+
T Consensus 90 vGGGS~iD~aK 100 (380)
T cd08185 90 LGGGSSMDTAK 100 (380)
T ss_pred eCCccHHHHHH
Confidence 56655544443
No 188
>smart00475 53EXOc 5'-3' exonuclease.
Probab=53.98 E-value=60 Score=25.48 Aligned_cols=106 Identities=20% Similarity=0.274 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEC-ChHHHHHHHHHHc---CcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC-
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQG-SPISIFQKLKREL---NFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS- 90 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~~---~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~- 90 (184)
|.+.+..+++-|+.+|++.+...| ++.+++..|++.. +...++++.|.+- .+.. ..++.+.....
T Consensus 82 L~~q~~~~~~~l~~~gi~~i~~~g~EADD~iatla~~~~~~g~~~~IvS~DkDl---------~ql~-~~~v~~~~~~~~ 151 (259)
T smart00475 82 LLEQIPLIKELLDALGIPVLEVEGYEADDVIATLAKKAEAEGYEVRIVSGDKDL---------LQLV-SDKVSVLDPTKG 151 (259)
T ss_pred HHHHHHHHHHHHHHCCCCEEeeCCcCHHHHHHHHHHHHHhCCCeEEEEeCCCcH---------hhcC-CCCEEEEeccCC
Confidence 566678888889999999988888 8999999998864 4455666666441 1111 12233221111
Q ss_pred ---ceeecccccccccCCCCchhHHHHHHHhhh-----ccccccCcchhH
Q psy17626 91 ---HTLWDPEVVIQTNGNVPPLTYKMYLHTVSC-----IGTMHIGYNRFR 132 (184)
Q Consensus 91 ---~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~-----~~~~~~~~~r~~ 132 (184)
..++++..+...-| -.|.-|..|....-. .+.|..|+....
T Consensus 152 ~~~~~~~~~~~v~~~~G-v~p~q~~d~~aL~GD~sDnipGV~GIG~KtA~ 200 (259)
T smart00475 152 IKEFELYTPENVIEKYG-LTPEQIIDYKALMGDSSDNIPGVPGIGEKTAA 200 (259)
T ss_pred CCccEEEcHHHHHHHhC-cCHHHHHHHHHHhCCcccCCCCCCCCCHHHHH
Confidence 24567776654432 355555555444432 234556665543
No 189
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=53.96 E-value=20 Score=25.76 Aligned_cols=6 Identities=17% Similarity=0.313 Sum_probs=2.6
Q ss_pred EeCChh
Q psy17626 155 VQGSPI 160 (184)
Q Consensus 155 ~~g~~~ 160 (184)
+-||..
T Consensus 167 ~iGD~~ 172 (188)
T TIGR01489 167 YIGDGV 172 (188)
T ss_pred EECCCc
Confidence 335443
No 190
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=53.96 E-value=29 Score=25.31 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=40.8
Q ss_pred HHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCe
Q psy17626 26 QLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 26 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~ 84 (184)
.|.+.|+..-|+.|.....+.+=+++.+|+++|--.. .++ ....+.+++.|+.
T Consensus 46 ~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG~~-----dK~-~a~~~L~~~~~l~ 98 (170)
T COG1778 46 LLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQGIS-----DKL-AAFEELLKKLNLD 98 (170)
T ss_pred HHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeechH-----hHH-HHHHHHHHHhCCC
Confidence 4566799999999999999999999999999987542 222 2455666776764
No 191
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=53.66 E-value=50 Score=22.45 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeE
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL 175 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v 175 (184)
...|..+.+++.+.|..++.+.-+..+.+.+++++++++--
T Consensus 43 ~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~ 83 (140)
T cd03017 43 ACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFP 83 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCce
Confidence 34566777777777887777776667778888888776543
No 192
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=53.55 E-value=29 Score=28.74 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=9.3
Q ss_pred HHHHHHHHHcCcceEEEe
Q psy17626 43 SIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 43 ~~l~~l~~~~~~~~v~~~ 60 (184)
+.|.+++++++++.|+.+
T Consensus 303 ~~i~~lv~~~~~DGVI~~ 320 (377)
T TIGR03190 303 DHVLGLAKEYNVQGAIFL 320 (377)
T ss_pred HHHHHHHHHhCCCEEEEe
Confidence 345555555555555444
No 193
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=53.16 E-value=26 Score=23.93 Aligned_cols=82 Identities=11% Similarity=0.118 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECCh----HHHHHHHHHHcCcceEEEeec-ccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFEQD-CEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g~~----~~~l~~l~~~~~~~~v~~~~~-~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
..+|.++|..|.++ ......++|+.... .+.+.++.+ .+..-.+.+.+ -......+...++.+- |=-+..
T Consensus 10 ~~~l~~~l~sl~~q-~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a~---~~~i~~ 84 (169)
T PF00535_consen 10 AEYLERTLESLLKQ-TDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHAK---GEYILF 84 (169)
T ss_dssp TTTHHHHHHHHHHH-SGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH-----SSEEEE
T ss_pred HHHHHHHHHHHhhc-cCCCEEEEEeccccccccccccccccc-cccccccccccccccccccccccccccc---eeEEEE
Confidence 45788899988888 45566777776544 344444444 12333333332 2244555555555432 223444
Q ss_pred ecCceeeccccc
Q psy17626 88 FVSHTLWDPEVV 99 (184)
Q Consensus 88 ~~~~~L~~p~~i 99 (184)
.++...++|+.+
T Consensus 85 ld~D~~~~~~~l 96 (169)
T PF00535_consen 85 LDDDDIISPDWL 96 (169)
T ss_dssp EETTEEE-TTHH
T ss_pred eCCCceEcHHHH
Confidence 466666666543
No 194
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=53.15 E-value=31 Score=26.91 Aligned_cols=31 Identities=10% Similarity=0.213 Sum_probs=26.8
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
++|++.|+++.+..|.+...+..++++++++
T Consensus 34 ~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 34 TRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred HHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 3466779999999999999999999998875
No 195
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=53.11 E-value=1.1e+02 Score=24.08 Aligned_cols=159 Identities=14% Similarity=0.062 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHH--HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPIS--IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|..+-+..+.+.+++.|..+.+... ++.. .+...+...+++.|+..... + ..+..+ +.+.+.|+++..++
T Consensus 73 ~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-~---~~~~~~-~~l~~~~iPvV~~~ 147 (327)
T TIGR02417 73 YSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASCM-P---PEDAYY-QKLQNEGLPVVALD 147 (327)
T ss_pred ccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-C---CChHHH-HHHHhcCCCEEEEc
Confidence 36667778888889999999888754 3322 22333455789988875321 1 012233 33456789988776
Q ss_pred Cceee-cccccccccCCCCchhHHHHHHHhhhcccccc----CcchhHHHHHHHHHHHHHHHhCCCeEE-EEeCC-----
Q psy17626 90 SHTLW-DPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLF-IVQGS----- 158 (184)
Q Consensus 90 ~~~L~-~p~~i~~~~~~~~~~v~~~F~~~~~~~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~-v~~g~----- 158 (184)
...-- +...+..++. -..+..- ....+.+-.+. ++.......+.++-..+.|++.|++.. +..++
T Consensus 148 ~~~~~~~~~~V~~dn~---~~~~~~~-~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~ 223 (327)
T TIGR02417 148 RSLDDEHFCSVISDDV---DAAAELI-ERLLSQHADEFWYLGAQPELSVSRDRLAGFRQALKQATLEVEWVYGGNYSRES 223 (327)
T ss_pred cccCCCCCCEEEeCcH---HHHHHHH-HHHHHCCCCeEEEEeCcccchhHHHHHHHHHHHHHHcCCChHhEEeCCCChHH
Confidence 43100 0111211110 0111110 01111111111 111112234456667777887776532 22222
Q ss_pred hhHHHHHHHHHcC--cCeEEEcccc
Q psy17626 159 PISIFQKLKRELN--FTKLCFEQDC 181 (184)
Q Consensus 159 ~~~~l~~l~~~~~--~~~v~~n~~~ 181 (184)
..+.+.++.++.+ .++||+..|.
T Consensus 224 ~~~~~~~ll~~~~~~~~Ai~~~~D~ 248 (327)
T TIGR02417 224 GYQMFAKLCARLGRLPQALFTTSYT 248 (327)
T ss_pred HHHHHHHHHhcCCCCCcEEEEcCcH
Confidence 2346677776653 7999987653
No 196
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=53.00 E-value=1.1e+02 Score=23.88 Aligned_cols=51 Identities=22% Similarity=0.046 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCeEEEEe-----CChhHHHHHHHHHcCcCeEEEcccc
Q psy17626 131 FRFLLECLADLDRQLKSHGGQLFIVQ-----GSPISIFQKLKRELNFTKLCFEQDC 181 (184)
Q Consensus 131 ~~fl~~~L~~L~~~L~~~g~~L~v~~-----g~~~~~l~~l~~~~~~~~v~~n~~~ 181 (184)
+..+.++|..+..-.++.|+.|.+-. -.......+++++.+-..|-.+-|+
T Consensus 128 ~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~~t~~~~~~li~~v~~~~v~~~~D~ 183 (279)
T TIGR00542 128 RRRFREGLKEAVELAARAQVTLAVEIMDTPFMSSISKWLKWDHYLNSPWFTLYPDI 183 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEeeCCCchhcCHHHHHHHHHHcCCCceEEEeCc
Confidence 34566777777777777788776642 1122334556776666666665554
No 197
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=52.99 E-value=22 Score=25.59 Aligned_cols=41 Identities=7% Similarity=0.155 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe----EEEc
Q psy17626 138 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK----LCFE 178 (184)
Q Consensus 138 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~----v~~n 178 (184)
+.++-+.|++.|+++.++.+.....+..+.+.+++.. ++.|
T Consensus 77 ~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~ 121 (188)
T TIGR01489 77 FKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSN 121 (188)
T ss_pred HHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEecc
Confidence 3445566777899999999988888888888888764 5554
No 198
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=52.95 E-value=1.2e+02 Score=27.71 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcce
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 56 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 56 (184)
..+.-++|++.|++..++.||....-..++++.|+..
T Consensus 447 a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~ 483 (755)
T TIGR01647 447 TKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGT 483 (755)
T ss_pred HHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence 4455567788899999999999999999999999964
No 199
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=52.90 E-value=1.5e+02 Score=27.74 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
...+.=++|++.|++..++.||....-..++++.|+.
T Consensus 519 ~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~ 555 (867)
T TIGR01524 519 STKEAIAALFKNGINVKVLTGDNEIVTARICQEVGID 555 (867)
T ss_pred hHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 4455566778889999999999999999999999997
No 200
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=52.79 E-value=1.1e+02 Score=23.72 Aligned_cols=129 Identities=10% Similarity=0.087 Sum_probs=74.2
Q ss_pred CeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCceeecccccccccCCCCchhH
Q psy17626 32 GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTY 111 (184)
Q Consensus 32 ~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~~~~~~~v~ 111 (184)
...++..-+|...++.+++. +++.|.+|-|.++.- .++-+.+++.|+.+. ++-..+. +++...+
T Consensus 71 ~DvHLMv~~P~~~i~~~~~a-Gad~It~H~Ea~~~~----~~~l~~Ik~~g~~~k---------aGlalnP--~Tp~~~i 134 (228)
T PRK08091 71 KDVHLMVRDQFEVAKACVAA-GADIVTLQVEQTHDL----ALTIEWLAKQKTTVL---------IGLCLCP--ETPISLL 134 (228)
T ss_pred EEEEeccCCHHHHHHHHHHh-CCCEEEEcccCcccH----HHHHHHHHHCCCCce---------EEEEECC--CCCHHHH
Confidence 34455566898888888764 899999998865432 233445566776332 1212221 2355666
Q ss_pred HHHHHHhhhcc--ccccCcchhHHHHHHHHH---HHHHHHhCCCeEE-EEeCChh-HHHHHHHHHcCcCeEEE
Q psy17626 112 KMYLHTVSCIG--TMHIGYNRFRFLLECLAD---LDRQLKSHGGQLF-IVQGSPI-SIFQKLKRELNFTKLCF 177 (184)
Q Consensus 112 ~~F~~~~~~~~--~~~~~~~r~~fl~~~L~~---L~~~L~~~g~~L~-v~~g~~~-~~l~~l~~~~~~~~v~~ 177 (184)
.++........ ...+|..-+.|+..++.. |++-+.+.|.... -+.|... +.+. .+.+.|++.++.
T Consensus 135 ~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~-~l~~aGaD~~V~ 206 (228)
T PRK08091 135 EPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELAS-YLKQHQIDWVVS 206 (228)
T ss_pred HHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHH-HHHHCCCCEEEE
Confidence 66665544332 234455566677665555 4555666665543 3566554 4444 556888886654
No 201
>PRK10490 sensor protein KdpD; Provisional
Probab=52.68 E-value=2e+02 Score=26.93 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeC-ChhHHHHHHHHHcCcCeEEEccc
Q psy17626 134 LLECLADLDRQLKSHGGQLFIVQG-SPISIFQKLKRELNFTKLCFEQD 180 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~~~~~~v~~n~~ 180 (184)
+.+.+ .|.++ +|....++.| +..+.|.+++++.+||.|+..+.
T Consensus 302 l~~~~-~lA~~---lGa~~~~~~~~dva~~i~~~A~~~~vt~IViG~s 345 (895)
T PRK10490 302 ILSAL-RLAQE---LGAETATLSDPAEEKAVLRYAREHNLGKIIIGRR 345 (895)
T ss_pred HHHHH-HHHHH---cCCEEEEEeCCCHHHHHHHHHHHhCCCEEEECCC
Confidence 44444 24444 4999777776 68889999999999999998764
No 202
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=52.57 E-value=1.5e+02 Score=28.47 Aligned_cols=120 Identities=9% Similarity=0.043 Sum_probs=62.0
Q ss_pred HHHHHHHHhcCCeEEEEECChH-------------------HHHHHHHHHcCcceEEEeecccc-hhHHHHHHHHHHHHh
Q psy17626 21 ADLDRQLKSHGGQLFIVQGSPI-------------------SIFQKLKRELNFTKLCFEQDCEA-LWHKRDKKVKKWCAE 80 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~g~~~-------------------~~l~~l~~~~~~~~v~~~~~~~~-~~~~rd~~v~~~l~~ 80 (184)
..+-+.|++.|...++...+|. +.+.+++++.+++.|+..-+-.. ........-+..|++
T Consensus 31 ~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~ 110 (1068)
T PRK12815 31 TQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQ 110 (1068)
T ss_pred HHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHH
Confidence 3555788889999999887774 33566677777777766321111 111111111224555
Q ss_pred CCCeEEEecCceeecccccccccCCCCchhHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy17626 81 NNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ 156 (184)
Q Consensus 81 ~gi~~~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~~~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~ 156 (184)
.||++.- -++..+.... --..|+....+.+.|-++ .+...+++++.+.+++.|-|+.|..
T Consensus 111 ~gv~l~g------~~~~~i~~~~------DK~~~k~~l~~~GIpvp~----~~~v~s~ee~~~~~~~igyPvVVKP 170 (1068)
T PRK12815 111 YGVELLG------TNIEAIQKGE------DRERFRALMKELGEPVPE----SEIVTSVEEALAFAEKIGFPIIVRP 170 (1068)
T ss_pred CCCEEEC------CCHHHHHHhc------CHHHHHHHHHHcCcCCCC----ceeeCCHHHHHHHHHHcCCCEEEEE
Confidence 6665432 1222221111 011133344444443321 2344567777777778888888753
No 203
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=52.57 E-value=46 Score=24.86 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=25.6
Q ss_pred HHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 27 LKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 27 L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
|++.|+++.+..|.+...+..+++..+.+
T Consensus 28 l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 28 LQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 56679999999999999999999988765
No 204
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=52.55 E-value=65 Score=22.16 Aligned_cols=45 Identities=13% Similarity=0.060 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEe
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 60 (184)
-...|.++.+++.+.|..++.+..++.+.+.+++++++..-.+.+
T Consensus 47 ~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~ 91 (149)
T cd03018 47 ELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLS 91 (149)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEec
Confidence 556677777777777888777777777778888887776544443
No 205
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=52.47 E-value=19 Score=27.16 Aligned_cols=39 Identities=28% Similarity=0.306 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceE
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL 57 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v 57 (184)
.+.++=..|++.|.+|-|..+.+...+..+++.+++...
T Consensus 93 gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~ 131 (220)
T COG0546 93 GVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADY 131 (220)
T ss_pred CHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccc
Confidence 344455555666666666666666666666666655533
No 206
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=52.39 E-value=1.3e+02 Score=24.65 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChH-------HHHHHHHHHcCcceEEEe-ecccchhHHHHHHHHHHHHhCCCe-EEEe
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPI-------SIFQKLKRELNFTKLCFE-QDCEALWHKRDKKVKKWCAENNIT-VKEF 88 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~-------~~l~~l~~~~~~~~v~~~-~~~~~~~~~rd~~v~~~l~~~gi~-~~~~ 88 (184)
.++.+|.+.++++|.+.+|+.|... +.+....++.+++...++ -+..|....-+ ++.+.+++.++. +..+
T Consensus 12 g~l~~l~~~~~~~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~-~~~~~~~~~~~D~IIav 90 (357)
T cd08181 12 NCVEKHGEELAALGKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIM-EAVEIAKKFNADFVIGI 90 (357)
T ss_pred CHHHHHHHHHHHcCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHH-HHHHHHHhcCCCEEEEe
Confidence 4667777778877888777776432 345555666677655553 22234333333 444455566664 4556
Q ss_pred cCceeecccc
Q psy17626 89 VSHTLWDPEV 98 (184)
Q Consensus 89 ~~~~L~~p~~ 98 (184)
.+....|-.+
T Consensus 91 GGGSviD~aK 100 (357)
T cd08181 91 GGGSPLDAAK 100 (357)
T ss_pred CCchHHHHHH
Confidence 6666666554
No 207
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=52.26 E-value=36 Score=24.93 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=20.2
Q ss_pred hCCCeEEEEeCChhHHHHHHHHHcCcCeEEE
Q psy17626 147 SHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 147 ~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 177 (184)
+.|+++.|..|.+......++++.+++.+|.
T Consensus 62 ~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~ 92 (183)
T PRK09484 62 TSGIEVAIITGRKSKLVEDRMTTLGITHLYQ 92 (183)
T ss_pred HCCCEEEEEeCCCcHHHHHHHHHcCCceeec
Confidence 3567777777666666666666677666554
No 208
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=52.14 E-value=54 Score=21.64 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
...|.++..++++.|..++.+..++.+.+.+++++++..
T Consensus 45 l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~ 83 (124)
T PF00578_consen 45 LPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLP 83 (124)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCS
T ss_pred hhHHHHHhhhhccceEEeeecccccccchhhhhhhhccc
Confidence 345777888888889999999888888899999988754
No 209
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=51.85 E-value=1.2e+02 Score=24.07 Aligned_cols=71 Identities=8% Similarity=0.093 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHH--HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHh-CCCeEEEe
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPIS--IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAE-NNITVKEF 88 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~-~gi~~~~~ 88 (184)
.|+.+-+..+.+.++++|..+.+... ++.. .+.+.+...+++.|++.-.... ++ ..+.+.+ .|+++..+
T Consensus 72 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~-----~~-~~~~l~~~~~iPvV~~ 145 (341)
T PRK10703 72 PYFAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYP-----EP-LLAMLEEYRHIPMVVM 145 (341)
T ss_pred chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCC-----HH-HHHHHHhcCCCCEEEE
Confidence 46677777888889999999888753 2332 2333345568898876532111 11 2234455 69999887
Q ss_pred cC
Q psy17626 89 VS 90 (184)
Q Consensus 89 ~~ 90 (184)
+.
T Consensus 146 d~ 147 (341)
T PRK10703 146 DW 147 (341)
T ss_pred ec
Confidence 54
No 210
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=51.83 E-value=1.3e+02 Score=27.91 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEEC-ChHHHHHHHHHHcCcceEEEeecccchhHHH-HHHHHHHHH--hCCCeEEEecCc
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQG-SPISIFQKLKRELNFTKLCFEQDCEALWHKR-DKKVKKWCA--ENNITVKEFVSH 91 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~r-d~~v~~~l~--~~gi~~~~~~~~ 91 (184)
+....|.++| |.....+.| +..+.|.++++.++++.|+.-+.-....+.+ ...+...+- ..|+.++.....
T Consensus 301 ~~~~~Lae~l---Gae~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~~~idv~ii~~~ 375 (890)
T COG2205 301 HENLRLAEEL---GAEIVTLYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREAPGIDVHIVALD 375 (890)
T ss_pred HHHHHHHHHh---CCeEEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcCCCceEEEeeCC
Confidence 3444566655 999999885 6678999999999999999987544333222 123333222 357777765443
No 211
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=51.81 E-value=40 Score=25.19 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=25.1
Q ss_pred HHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 144 QLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 144 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
.|++.|+++.+..|.+...+..+++..+..
T Consensus 27 ~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 27 RLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 356779999999999998888888888865
No 212
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=51.56 E-value=83 Score=28.75 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
....+.=+.|+++|+++.++.|+.......++++.+++
T Consensus 571 ~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~ 608 (741)
T PRK11033 571 ADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGID 608 (741)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 34455666788899999999999999999999999997
No 213
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=51.36 E-value=1.4e+02 Score=27.87 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
.....+.=+.|++.|+++.++.|+....-..++++.++.
T Consensus 530 r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~ 568 (884)
T TIGR01522 530 RPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMP 568 (884)
T ss_pred hhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 345556667778889999999999999999999999986
No 214
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=51.23 E-value=41 Score=24.52 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=21.0
Q ss_pred HHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEE
Q psy17626 145 LKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 145 L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 177 (184)
|++.|+++.|+.+.+...+..+++.+++..+|.
T Consensus 46 L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~ 78 (169)
T TIGR02726 46 LQLCGIDVAIITSKKSGAVRHRAEELKIKRFHE 78 (169)
T ss_pred HHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEe
Confidence 334466777766666666666666666666553
No 215
>cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases. XPG is a eukaryotic enzyme that functions in nucleotide-excision repair and transcription-coupled repair of oxidative DNA damage. Functionally/structurally related to FEN-1; divalent metal ion-dependent exo- and endonuclease, and bacterial and bacteriophage 5'3' exonucleases.
Probab=50.59 E-value=37 Score=27.30 Aligned_cols=43 Identities=9% Similarity=0.052 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEe
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 60 (184)
+.+..+++-|+.+|++.++--+++.+.+..|++...++.|+.+
T Consensus 128 ~~~~~~~~lL~~~gi~~i~ap~EAdaq~a~l~~~g~v~~i~S~ 170 (316)
T cd00128 128 QMIEEAKELLRLMGIPYIVAPYEAEAQCAYLAKKGLVDAIITE 170 (316)
T ss_pred HHHHHHHHHHHHcCCCEEECCcCHHHHHHHHHhCCCeeEEEec
Confidence 3456677777888888888777888888888777666666664
No 216
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=50.41 E-value=1.6e+02 Score=25.22 Aligned_cols=148 Identities=14% Similarity=0.142 Sum_probs=77.1
Q ss_pred HHHHHHHHhcCCe-EEEEECChHHHHH-HHHHHcC---cceEEEeecccchhHHHHHHHHH-HHHhCCCe----E----E
Q psy17626 21 ADLDRQLKSHGGQ-LFIVQGSPISIFQ-KLKRELN---FTKLCFEQDCEALWHKRDKKVKK-WCAENNIT----V----K 86 (184)
Q Consensus 21 ~~L~~~L~~~g~~-L~v~~g~~~~~l~-~l~~~~~---~~~v~~~~~~~~~~~~rd~~v~~-~l~~~gi~----~----~ 86 (184)
..+.++++++.-- +....+.|...|. +|++... .++||+... +....+.--++.- .-...|-+ + .
T Consensus 67 ~Ai~~Q~~~l~~~~~~~~t~~Pa~~LA~~L~~~aP~~~l~~vFf~~s-GSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~ 145 (449)
T COG0161 67 EAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDS-GSEAVETALKMALQYWRARGQPQRKKFISRRN 145 (449)
T ss_pred HHHHHHHHhCCchhhcccCCchHHHHHHHHHHhCCCCCccEEEEeCC-chHHHHHHHHHHHHHHHhcCCCcceEEEEecc
Confidence 4566777776433 5555667755444 4555554 899999853 3333333222221 11223322 2 3
Q ss_pred EecCceeecccccccccCCCCchhHHHHHHHhhhc----cccc------cCcchhHHHHHHHHHHHHHHHhCC-CeE--E
Q psy17626 87 EFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI----GTMH------IGYNRFRFLLECLADLDRQLKSHG-GQL--F 153 (184)
Q Consensus 87 ~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~----~~~~------~~~~r~~fl~~~L~~L~~~L~~~g-~~L--~ 153 (184)
.+|+.++-.- +-+.++..+..|+...... ..|. .+.....| .+++++|++.+.+.| -.+ .
T Consensus 146 gYHG~T~ga~------Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~-~~~a~~le~~i~~~g~~~IAAf 218 (449)
T COG0161 146 GYHGDTLGAM------SVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEF-AEAADELEALILEHGPETIAAF 218 (449)
T ss_pred CcCcccchhe------eccCchhhhhhhccccccCceecCCCcccccCCCCCChHHH-HHHHHHHHHHHHhcCcccEEEE
Confidence 3455554322 1124565554454333221 2222 12234456 789999999999988 322 2
Q ss_pred EEe---C----------ChhHHHHHHHHHcCcCeEE
Q psy17626 154 IVQ---G----------SPISIFQKLKRELNFTKLC 176 (184)
Q Consensus 154 v~~---g----------~~~~~l~~l~~~~~~~~v~ 176 (184)
|.+ | .-...+.++|++|+|==|+
T Consensus 219 I~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~ 254 (449)
T COG0161 219 IVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIA 254 (449)
T ss_pred EecccccccCCcccCChHHHHHHHHHHHHcCcEEEe
Confidence 222 1 2235677899999985544
No 217
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=50.39 E-value=1.1e+02 Score=24.13 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcce
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 56 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 56 (184)
.+.++=+.|++.|+++.|..+.....+..+.+..++..
T Consensus 146 g~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~ 183 (273)
T PRK13225 146 GVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS 183 (273)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh
Confidence 44556667777788888888887777777777776653
No 218
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=50.38 E-value=14 Score=28.89 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcC
Q psy17626 134 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 171 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~ 171 (184)
+.+...++=..|.+.++|++|+++.-.+++....++.+
T Consensus 91 LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~ 128 (246)
T PF05822_consen 91 LRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAG 128 (246)
T ss_dssp B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT
T ss_pred hhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcC
Confidence 45677788889999999999999888888888877764
No 219
>PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A.
Probab=50.30 E-value=62 Score=21.74 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhc---CCeEEEE---ECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 17 LECLADLDRQLKSH---GGQLFIV---QGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 17 ~~sL~~L~~~L~~~---g~~L~v~---~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.-||..+...|.++ ...+-|+ -|++.+.=-.+++..++.-+.||-...+ .+++..++.||++..++
T Consensus 26 ~GslEAi~~~l~~~~~~~v~i~Ii~~~VG~it~sDI~~A~~~~a~Ii~FNv~~~~-------~~~~~a~~~~V~I~~~~ 97 (108)
T PF11987_consen 26 QGSLEAIKNSLEKLSNDEVKIKIIHAGVGPITESDIELASASNAIIIAFNVKVSP-------DAKDLAKKSGVKIRSHN 97 (108)
T ss_dssp HHHHHHHHHHHCCTT-SSSCEEESEEEESSBHHHHHHHHHHHC-EEEESSS-B-H-------HHHHCHHSSTSEEEEST
T ss_pred hhhHHHHHHHHHhcccccccccEEEeeCCCCCHHHHHHHHhhCCEEEEeeCCCCH-------HHHHHHHHcCCEEEEeC
Confidence 35788888888877 3455555 4777766566777777777777765443 44455577889887653
No 220
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=50.08 E-value=30 Score=25.69 Aligned_cols=41 Identities=17% Similarity=0.108 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEE
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 176 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~ 176 (184)
..+.++=+.|++.|+++.|+.+.+...+...++..|+...|
T Consensus 85 ~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f 125 (214)
T PRK13288 85 ETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFF 125 (214)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhce
Confidence 44455566677779999999988888888888888887654
No 221
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=49.28 E-value=74 Score=20.93 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCcCeEEEcccccC
Q psy17626 161 SIFQKLKRELNFTKLCFEQDCEA 183 (184)
Q Consensus 161 ~~l~~l~~~~~~~~v~~n~~~~~ 183 (184)
+.+..+++..+++.|++|.+.+|
T Consensus 47 eei~~~~~~~~~d~vvfd~~Lsp 69 (95)
T PF13167_consen 47 EEIKELIEELDADLVVFDNELSP 69 (95)
T ss_pred HHHHHHHhhcCCCEEEECCCCCH
Confidence 33555555566666666655443
No 222
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=48.83 E-value=1.2e+02 Score=23.09 Aligned_cols=161 Identities=12% Similarity=0.090 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEE----CChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeE
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQ----GSPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~----g~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
-.|+.+-+..+.+.+++.|..+.+.. +++.. .+..+. ..+++.|..... .. ..-+..+ +.+.+.||++
T Consensus 11 ~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~-~~--~~~~~~~-~~~~~~~iPv 85 (275)
T cd06320 11 NEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMI-NKGYKGLLFSPI-SD--VNLVPAV-ERAKKKGIPV 85 (275)
T ss_pred CHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHH-HhCCCEEEECCC-Ch--HHhHHHH-HHHHHCCCeE
Confidence 34667777888888999999998874 24432 233443 458898876421 11 1122233 3456789999
Q ss_pred EEecCceeecccccccccCCCCchh---HHHHHHHh-hhccccc--cCcchhHHHHHHHHHHHHHHHhC-CCeEEEEe-C
Q psy17626 86 KEFVSHTLWDPEVVIQTNGNVPPLT---YKMYLHTV-SCIGTMH--IGYNRFRFLLECLADLDRQLKSH-GGQLFIVQ-G 157 (184)
Q Consensus 86 ~~~~~~~L~~p~~i~~~~~~~~~~v---~~~F~~~~-~~~~~~~--~~~~r~~fl~~~L~~L~~~L~~~-g~~L~v~~-g 157 (184)
..++... +......= +.+.+.. -..+.... ...+... .+......-....+.+.+.+++. |+++.... +
T Consensus 86 V~~~~~~--~~~~~~~V-~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~ 162 (275)
T cd06320 86 VNVNDKL--IPNATAFV-GTDNKANGVRGAEWIIDKLAEGGKVAIIEGKAGAFAAEQRTEGFTEAIKKASGIEVVASQPA 162 (275)
T ss_pred EEECCCC--CCccceEE-ecCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHHHhhCCCcEEEEecCC
Confidence 8776432 11111000 0011111 11111111 0000100 11111122234556677788888 87754322 1
Q ss_pred -----ChhHHHHHHHHHc-CcCeEEEcccc
Q psy17626 158 -----SPISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 158 -----~~~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
+....+.++.+.+ .++.||++.|.
T Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 192 (275)
T cd06320 163 DWDREKAYDVATTILQRNPDLKAIYCNNDT 192 (275)
T ss_pred CccHHHHHHHHHHHHHhCCCccEEEECCch
Confidence 1234566666654 58899987653
No 223
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=48.76 E-value=1.1e+02 Score=22.70 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 54 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 54 (184)
+.++-+.|++.|+++.++.+.....+..+++..+.
T Consensus 98 ~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l 132 (226)
T PRK13222 98 VKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGI 132 (226)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 44555566666777777776666666666666554
No 224
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=48.64 E-value=86 Score=21.52 Aligned_cols=43 Identities=14% Similarity=0.083 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEE
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 177 (184)
...|+++.+++.+.|+.++.+..++.+.+.+++++++..-.+.
T Consensus 48 ~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~ 90 (149)
T cd03018 48 LCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLL 90 (149)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEe
Confidence 3455666667766777776666666667777777776654433
No 225
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=48.59 E-value=1.2e+02 Score=23.31 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC-ChHHHHHHHHHH---cCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQG-SPISIFQKLKRE---LNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~---~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
-+.+.+..+++-|+.+|++.+...| ++.+++..|++. .+...++++.|.+-. ... ..++.+.....
T Consensus 82 ~l~~q~~~~~~~l~~~gi~~i~~~~~EADD~ia~la~~~~~~g~~~~I~S~DkD~~---------ql~-~~~v~~~~~~~ 151 (240)
T cd00008 82 ELREQIPLIKELLEALGIPVLEIEGYEADDVIGTLAKKAEAEGYKVVIVSGDKDLL---------QLV-SDNVKVVSPMK 151 (240)
T ss_pred HHHHHHHHHHHHHHHCCCCEEecCCcCHHHHHHHHHHHHHHcCCeEEEEeCCCChh---------hhC-CCCEEEEeCCC
Confidence 4667888999999999999888877 888899988864 344556677665421 111 22344433323
Q ss_pred ceeecccccccccCCCCchhHHHHHHHhhh-----ccccccCcchhHHHH---HHHHHHHHHHHh
Q psy17626 91 HTLWDPEVVIQTNGNVPPLTYKMYLHTVSC-----IGTMHIGYNRFRFLL---ECLADLDRQLKS 147 (184)
Q Consensus 91 ~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~-----~~~~~~~~~r~~fl~---~~L~~L~~~L~~ 147 (184)
...+++..+...-| -.|.-+..|....-. .+.|..|+....-+. .+++++-+.+.+
T Consensus 152 ~~~i~~~~v~~~~g-~~p~q~~d~~~L~GD~sDnipGv~GiG~ktA~~Ll~~~gsle~i~~~~~~ 215 (240)
T cd00008 152 KKLVTEENVIEKYG-VTPAQIIDYKALMGDSSDNIPGVPGIGEKTAAKLLKEYGSLEGILENLDK 215 (240)
T ss_pred ceEEeHHHHHHHhC-cCHHHHHHHHHHcCCcccCCCCCCccCHHHHHHHHHHhCCHHHHHHhHHH
Confidence 34566666544433 345555555443331 134556665554333 244444444433
No 226
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=48.56 E-value=1.5e+02 Score=24.37 Aligned_cols=79 Identities=11% Similarity=0.091 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcC-CeEEEEECCh------HHHHHHHHHHcCcceEEEeeccc--chhHHHHHHHHHHHHhCCCeE-E
Q psy17626 17 LECLADLDRQLKSHG-GQLFIVQGSP------ISIFQKLKRELNFTKLCFEQDCE--ALWHKRDKKVKKWCAENNITV-K 86 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g-~~L~v~~g~~------~~~l~~l~~~~~~~~v~~~~~~~--~~~~~rd~~v~~~l~~~gi~~-~ 86 (184)
..++.+|.+.++++| .+..|+.|.. .+.+...+++.++....++ +.+ |....-+ ++.+.+++.++.+ .
T Consensus 11 ~g~l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~-~v~~~p~~~~v~-~~~~~~~~~~~d~II 88 (374)
T cd08189 11 SGSLAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYD-GVPPDPTIENVE-AGLALYRENGCDAIL 88 (374)
T ss_pred cCHHHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeC-CCCCCcCHHHHH-HHHHHHHhcCCCEEE
Confidence 356778888888888 4666666542 2334444555566655453 232 3333333 3444455556653 4
Q ss_pred EecCceeeccc
Q psy17626 87 EFVSHTLWDPE 97 (184)
Q Consensus 87 ~~~~~~L~~p~ 97 (184)
.+.+....|-.
T Consensus 89 aiGGGS~~D~a 99 (374)
T cd08189 89 AVGGGSVIDCA 99 (374)
T ss_pred EeCCccHHHHH
Confidence 45554544444
No 227
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=48.48 E-value=83 Score=21.28 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEE
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 59 (184)
....|..+.+++.+.|..++.+.-+..+.+.+++++.+++-.+.
T Consensus 42 ~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l 85 (140)
T cd03017 42 EACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLL 85 (140)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEE
Confidence 45677788888888888888887777788888888887764444
No 228
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=48.39 E-value=37 Score=25.46 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCc--CeEEEc
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF--TKLCFE 178 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~--~~v~~n 178 (184)
....++=+.|++.|+++.|+++.....+..+.+.+ + ..+++|
T Consensus 77 pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n 120 (219)
T PRK09552 77 EGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCN 120 (219)
T ss_pred cCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEe
Confidence 34455555677889999999998888888887776 4 347665
No 229
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=48.32 E-value=69 Score=25.45 Aligned_cols=45 Identities=11% Similarity=0.179 Sum_probs=27.8
Q ss_pred HHHHHHHHcCcc---eEEEeecccch-hHHHHHHHHHHHHhCCCeEEEe
Q psy17626 44 IFQKLKRELNFT---KLCFEQDCEAL-WHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 44 ~l~~l~~~~~~~---~v~~~~~~~~~-~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.+...+++.|++ |+.+.++.... -.+|.+.+++.|++.|++|+..
T Consensus 121 ~i~~~Ak~mGAktFVh~sfprhms~~~l~~Rr~~M~~~C~~lGi~fv~~ 169 (275)
T PF12683_consen 121 TIVWAAKKMGAKTFVHYSFPRHMSYELLARRRDIMEEACKDLGIKFVEV 169 (275)
T ss_dssp HHHHHHHHTT-S-EEEEEETTGGGSHHHHHHHHHHHHHHHHCT--EEEE
T ss_pred HHHHHHHHcCCceEEEEechhhcchHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 477788888887 34455555433 3445567888899999988764
No 230
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=48.32 E-value=79 Score=23.04 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCc----CeEEEccc
Q psy17626 140 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQD 180 (184)
Q Consensus 140 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~n~~ 180 (184)
++=+.|++.|.++.++.+.+...+...++..|+ +.+++..+
T Consensus 99 ~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~ 143 (198)
T TIGR01428 99 AGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADA 143 (198)
T ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhh
Confidence 334456677889998888777777777777776 44544433
No 231
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=48.28 E-value=98 Score=22.87 Aligned_cols=8 Identities=13% Similarity=0.372 Sum_probs=3.4
Q ss_pred HHhhhccc
Q psy17626 116 HTVSCIGT 123 (184)
Q Consensus 116 ~~~~~~~~ 123 (184)
....+++.
T Consensus 158 ~~~~~~~~ 165 (221)
T TIGR02253 158 AALKRLGV 165 (221)
T ss_pred HHHHHcCC
Confidence 34444443
No 232
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=48.26 E-value=44 Score=21.57 Aligned_cols=41 Identities=12% Similarity=0.023 Sum_probs=18.4
Q ss_pred HHHHHHHcCcceEEEeecccchhHH-HHHHHHHHHHhCCCeE
Q psy17626 45 FQKLKRELNFTKLCFEQDCEALWHK-RDKKVKKWCAENNITV 85 (184)
Q Consensus 45 l~~l~~~~~~~~v~~~~~~~~~~~~-rd~~v~~~l~~~gi~~ 85 (184)
+.++.++.+++-|+.+......... -...+++.+.+.+|++
T Consensus 52 i~~~i~~~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~ 93 (95)
T PF02142_consen 52 IMDLIKNGKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPL 93 (95)
T ss_dssp HHHHHHTTSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHE
T ss_pred HHHHHHcCCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCC
Confidence 5555555666644444332222222 2345555555555543
No 233
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=48.20 E-value=86 Score=23.44 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcC--CeEEEEECChHHHHHHHHHHcCcceEEEeecccch
Q psy17626 18 ECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66 (184)
Q Consensus 18 ~sL~~L~~~L~~~g--~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~ 66 (184)
++..-|.+.++.+| ....++.+++...|..+......+-||.+-.|...
T Consensus 77 ~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~ 127 (187)
T COG0742 77 KAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKG 127 (187)
T ss_pred HHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccc
Confidence 46667778888888 77889999999888888887778889998866633
No 234
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.11 E-value=1.2e+02 Score=22.97 Aligned_cols=158 Identities=10% Similarity=-0.057 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEE----CChHHH---HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeE
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQ----GSPISI---FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~----g~~~~~---l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
-.|+.+-+..+.+.++++|..+.+.. +++... +..+ ...+++.|+... ......++.+ +.+.+.|+++
T Consensus 11 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l-~~~~vdgvii~~---~~~~~~~~~l-~~~~~~~ipv 85 (273)
T cd06310 11 SDFWQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENA-IARGPDAILLAP---TDAKALVPPL-KEAKDAGIPV 85 (273)
T ss_pred cHHHHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHH-HHhCCCEEEEcC---CChhhhHHHH-HHHHHCCCCE
Confidence 35777888888899999999998874 344433 3333 345899888743 1111112233 3445679998
Q ss_pred EEecCceeeccc---ccccccCCCCchh-HHHHHHHhhhc-cccc---c-CcchhHHHHHHHHHHHHHHHhC-CCeEEE-
Q psy17626 86 KEFVSHTLWDPE---VVIQTNGNVPPLT-YKMYLHTVSCI-GTMH---I-GYNRFRFLLECLADLDRQLKSH-GGQLFI- 154 (184)
Q Consensus 86 ~~~~~~~L~~p~---~i~~~~~~~~~~v-~~~F~~~~~~~-~~~~---~-~~~r~~fl~~~L~~L~~~L~~~-g~~L~v- 154 (184)
..++.. .-++. .+..+ .+.. +..-....... +..+ . +........+......+.+++. |+++..
T Consensus 86 V~~~~~-~~~~~~~~~v~~d----~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~a~~~~~~~~~~~~ 160 (273)
T cd06310 86 VLIDSG-LNSDIAVSFVATD----NVAAGKLAAEALAELLGKKGKVAVISFVPGSSTTDQREEGFLEGLKEYPGIEIVAT 160 (273)
T ss_pred EEecCC-CCCCcceEEEeeC----hHHHHHHHHHHHHHHcCCCceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEEEec
Confidence 887543 11111 12111 1111 11111111111 1111 0 1111123345566777888887 776543
Q ss_pred EeC-----ChhHHHHHHHHHc-CcCeEEEccc
Q psy17626 155 VQG-----SPISIFQKLKREL-NFTKLCFEQD 180 (184)
Q Consensus 155 ~~g-----~~~~~l~~l~~~~-~~~~v~~n~~ 180 (184)
..+ +..+.+.++.++. .++.||++.+
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d 192 (273)
T cd06310 161 QYSDSDYAKALDITEDLLTANPDLKGIFGANE 192 (273)
T ss_pred ccCCcCHHHHHHHHHHHHHhCCCceEEEecCc
Confidence 221 2234555666554 5899998765
No 235
>KOG4498|consensus
Probab=47.95 E-value=40 Score=25.26 Aligned_cols=52 Identities=17% Similarity=0.109 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHH-HHHcCcCeEEEcccccC
Q psy17626 132 RFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL-KRELNFTKLCFEQDCEA 183 (184)
Q Consensus 132 ~fl~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l-~~~~~~~~v~~n~~~~~ 183 (184)
....+.|.++..=|.++|+.|+.+--.....+..+ -+.+.+.+||...+-+.
T Consensus 67 R~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~~f~gevylD~~~~~ 119 (197)
T KOG4498|consen 67 REEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQTYFSGEVYLDPHRGF 119 (197)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhcccCcceeEEEcCccce
Confidence 45678899998889999999998753233334444 45567788998776543
No 236
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=47.95 E-value=1e+02 Score=22.09 Aligned_cols=53 Identities=9% Similarity=0.234 Sum_probs=36.6
Q ss_pred CCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 31 GGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 31 g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
|..|++-.-.-......++. .+|+.||+..+|... ..-.++|++.||+++.+.
T Consensus 87 g~tlYvT~ePC~~Ca~ai~~-agI~~Vvy~~~~~~~-----~~~~~~l~~~gi~v~~~~ 139 (151)
T TIGR02571 87 GAEIYVTHFPCLQCTKSIIQ-AGIKKIYYAQDYHNH-----PYAIELFEQAGVELKKVP 139 (151)
T ss_pred CcEEEEeCCCcHHHHHHHHH-hCCCEEEEccCCCCc-----HHHHHHHHHCCCEEEEeC
Confidence 56676655444556666654 699999998766432 134568899999999774
No 237
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=47.79 E-value=1.1e+02 Score=23.41 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCC--eEEEEECChHHHHHHHHHH---cCcceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 20 LADLDRQLKSHGG--QLFIVQGSPISIFQKLKRE---LNFTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 20 L~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~---~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+...++.+++.|. ...++.|++.+.++.++.. -..+-||.+.+-..+..-- +.+.+.++..|+
T Consensus 106 ~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~-~~~~~ll~~GG~ 173 (234)
T PLN02781 106 YEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADKPNYVHFH-EQLLKLVKVGGI 173 (234)
T ss_pred HHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHHHHHHHH-HHHHHhcCCCeE
Confidence 3344555555564 5889999999999999765 4688899986654444332 344445554454
No 238
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=47.57 E-value=44 Score=25.02 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEE
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 176 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~ 176 (184)
.+.++=+.|++.|.++.++.+.....+..+.+..+++..|
T Consensus 96 g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f 135 (222)
T PRK10826 96 GVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYF 135 (222)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcc
Confidence 4555557788889999999988888788888888877665
No 239
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=47.49 E-value=59 Score=25.11 Aligned_cols=20 Identities=30% Similarity=0.258 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhCCCe
Q psy17626 132 RFLLECLADLDRQLKSHGGQ 151 (184)
Q Consensus 132 ~fl~~~L~~L~~~L~~~g~~ 151 (184)
.=+.+.|..|+.-|.+.|+.
T Consensus 118 ~~lv~AlkaLkpil~~~gi~ 137 (272)
T COG4130 118 EDLVEALKALKPILDEYGIT 137 (272)
T ss_pred HHHHHHHHHhhHHHHHhCcc
Confidence 33455555555555555543
No 240
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=47.37 E-value=48 Score=19.88 Aligned_cols=36 Identities=19% Similarity=0.053 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 174 (184)
.|++|...|...|++..-.-+ ...+.++|...||+-
T Consensus 26 ~L~el~~~L~~~g~~~~~~~~--~~~l~~~lD~~gIt~ 61 (64)
T PF09494_consen 26 NLEELHAWLKASGIGFDRKVD--PSKLKEWLDSQGITF 61 (64)
T ss_pred cHHHHHHHHHHcCCCccceeC--HHHHHHHHHHCCcee
Confidence 688999999877775443222 667889999999874
No 241
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.27 E-value=1.2e+02 Score=22.84 Aligned_cols=72 Identities=8% Similarity=0.097 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC--hHH--HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGS--PIS--IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~--~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|+.+-+..+.+.++++|..+.+..++ +.. ...+.+...+++.|....... . +..++ .+.+.||++..++
T Consensus 12 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~-~----~~~~~-~~~~~~iPvv~~~ 85 (265)
T cd06285 12 TVMATMYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGDARS-D----DHFLD-ELTRRGVPFVLVL 85 (265)
T ss_pred ccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC-C----hHHHH-HHHHcCCCEEEEc
Confidence 466777888888899999998776542 322 233345567899888764211 1 12233 3466799998776
Q ss_pred Cc
Q psy17626 90 SH 91 (184)
Q Consensus 90 ~~ 91 (184)
..
T Consensus 86 ~~ 87 (265)
T cd06285 86 RH 87 (265)
T ss_pred cC
Confidence 53
No 242
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=47.23 E-value=50 Score=23.87 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=31.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHH------------HHHHHHHHcCcc
Q psy17626 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPIS------------IFQKLKRELNFT 55 (184)
Q Consensus 9 ~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~------------~l~~l~~~~~~~ 55 (184)
.+.++..++..+.++=+.|++.|.++.|....+.. .+..+++..++.
T Consensus 36 ~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~ 94 (166)
T TIGR01664 36 SASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP 94 (166)
T ss_pred ChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC
Confidence 44555556677777777788889999988765432 355666666654
No 243
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=47.22 E-value=81 Score=20.78 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
.++|.++.+.++++|+.+++. ++...+.+.....++.
T Consensus 66 i~~L~~~~~~~~~~g~~~~l~--~~~~~v~~~l~~~~~~ 102 (117)
T PF01740_consen 66 IQALVDIIKELRRRGVQLVLV--GLNPDVRRILERSGLI 102 (117)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE--SHHHHHHHHHHHTTGH
T ss_pred HHHHHHHHHHHHHCCCEEEEE--ECCHHHHHHHHHcCCC
Confidence 457788888888888888887 4444455555555443
No 244
>PF15603 Imm45: Immunity protein 45
Probab=46.91 E-value=37 Score=21.73 Aligned_cols=70 Identities=9% Similarity=-0.004 Sum_probs=45.8
Q ss_pred CeEEEecCceeecccccccccCCCCchhHHHHHHHhhhccccccC-cchhHHHHHHHHHHHHHHHhCCCeEE
Q psy17626 83 ITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIG-YNRFRFLLECLADLDRQLKSHGGQLF 153 (184)
Q Consensus 83 i~~~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~~~~~~~-~~r~~fl~~~L~~L~~~L~~~g~~L~ 153 (184)
+.+..-+++.+.-.++...... .-+..|-.|.....+|.+|... +.-..=+..-+++..+.+.+.|+.+.
T Consensus 10 i~~el~~G~~~~~~GE~l~~~~-~~~~~Fvvy~~si~~We~P~e~~~it~~e~q~II~aI~~~~~~~~~~v~ 80 (82)
T PF15603_consen 10 ITFELEEGARRKAQGEMLLTGN-DNDGDFVVYKDSIKNWEPPHENEPITIAERQKIIEAIEKYFSERGMTVD 80 (82)
T ss_pred eEEEecCCEEEEEeeeEEEecc-CCCcCEEEEccccccccCCCCCcccCHHHHHHHHHHHHHHHhcCceEEE
Confidence 4455555666655665555422 3455577788999999988866 34444455667778888888887654
No 245
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=46.77 E-value=76 Score=24.79 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 54 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 54 (184)
.+.++=+.|++.|.++.|..+.+...+..+++..++
T Consensus 113 g~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl 148 (260)
T PLN03243 113 GSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGM 148 (260)
T ss_pred CHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCC
Confidence 344555666667777777777766666666666554
No 246
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=46.72 E-value=19 Score=24.65 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=36.7
Q ss_pred HHHHHcCcceEEEe-ecc---------cc-----hhHHHHHHHHHHHHhCCCeEEEecCceeeccccc
Q psy17626 47 KLKRELNFTKLCFE-QDC---------EA-----LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99 (184)
Q Consensus 47 ~l~~~~~~~~v~~~-~~~---------~~-----~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i 99 (184)
.......++-|+++ .+. ++ ...+||....+.|++.||++..+........+.+
T Consensus 51 ~~~~~~~vDFvv~d~~~~~p~~vIEld~~~h~~~~~~~rD~~k~~~l~~agiplir~~~~~~~~~~~l 118 (126)
T PF10881_consen 51 NRINQKHVDFVVCDKRDGRPVAVIELDGSSHDQEKRQERDEFKDRVLKKAGIPLIRISPKDSYSVEEL 118 (126)
T ss_pred HHhcCCCccEEEEECCCCcEEEEEEecCccccchhhHHHHHHHHHHHHHCCCCEEEEeCCCCCCHHHH
Confidence 33444567777777 322 11 3578888889999999999999876666665554
No 247
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=46.71 E-value=63 Score=19.34 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhC--CCeEEEEeCChh--HHHHHHHHHcCcCeEEEcc
Q psy17626 136 ECLADLDRQLKSH--GGQLFIVQGSPI--SIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 136 ~~L~~L~~~L~~~--g~~L~v~~g~~~--~~l~~l~~~~~~~~v~~n~ 179 (184)
..|-.+.+.|+++ |..|.|+..++. .-++.+|+..|.+-+-.+.
T Consensus 12 ~Pll~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~~ 59 (70)
T PF01206_consen 12 MPLLKAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEVEE 59 (70)
T ss_dssp HHHHHHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEE
Confidence 3455667777765 777888876665 5699999999987665543
No 248
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.49 E-value=1.3e+02 Score=22.83 Aligned_cols=72 Identities=11% Similarity=0.108 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChH--HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPI--SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~--~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|+.+-+..+.+.++++|..+.+... ++. ....+.+.+.+++.|...-... .. ..+.+.+.+.|+++..++
T Consensus 12 ~~~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~-~~----~~~~~~~~~~~ipvV~i~ 86 (269)
T cd06281 12 PLLAQLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGDE-RD----PELVDALASLDLPIVLLD 86 (269)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCC-Cc----HHHHHHHHhCCCCEEEEe
Confidence 46667777788888899999887743 332 2222334557889888753211 11 123344566789988776
Q ss_pred C
Q psy17626 90 S 90 (184)
Q Consensus 90 ~ 90 (184)
.
T Consensus 87 ~ 87 (269)
T cd06281 87 R 87 (269)
T ss_pred c
Confidence 4
No 249
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=46.20 E-value=31 Score=27.01 Aligned_cols=56 Identities=18% Similarity=0.091 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCceeecccc
Q psy17626 43 SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEV 98 (184)
Q Consensus 43 ~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~ 98 (184)
+-|+.|.++++++-|..|-+-....+-.-+.+.+.+.+.|+.+.+...|+...++.
T Consensus 20 ~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dviT~GNH~wd~~ei 75 (266)
T COG1692 20 EHLPQLKSKYKIDFVIVNGENAAGGFGITEKIYKELLEAGADVITLGNHTWDQKEI 75 (266)
T ss_pred HHhHHHHHhhcCcEEEEcCccccCCcCCCHHHHHHHHHhCCCEEecccccccchHH
Confidence 56888888888888888887766666666667777777888888776666544443
No 250
>PRK14976 5'-3' exonuclease; Provisional
Probab=46.16 E-value=82 Score=25.08 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC-ChHHHHHHHHHHc---CcceEEEeeccc
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQG-SPISIFQKLKREL---NFTKLCFEQDCE 64 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~~---~~~~v~~~~~~~ 64 (184)
-+.+.+..+++-|+.+|++.+...| ++.++|..++++. +...++.+.|.+
T Consensus 87 ~l~~q~~~i~~~l~~~gi~~~~~~g~EADDviatla~~~~~~g~~v~IvS~DkD 140 (281)
T PRK14976 87 SLISQIPLLKKILKLAGIKWEEQPGYEADDLIGSLAKKLSKQNITVLIYSSDKD 140 (281)
T ss_pred HHHHHHHHHHHHHHHCCCCEEecCCcCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3566778888888999999999888 8889999998764 445566666654
No 251
>PRK00074 guaA GMP synthase; Reviewed
Probab=46.11 E-value=1.5e+02 Score=25.73 Aligned_cols=76 Identities=9% Similarity=0.145 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECChH-HHHHHHHHHc---CcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGSPI-SIFQKLKREL---NFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~~~-~~l~~l~~~~---~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|+-+.+..|++.++. +.-+.-+.|-.. .++..++.+. ++.+|+++....+ ..+.++..+..+++.||+++..+
T Consensus 200 ~~~~~~~~~l~~~v~~-~~vlva~SGGvDS~vll~ll~~~lg~~v~av~vd~g~~~-~~e~~~~~~~~a~~lgi~~~vvd 277 (511)
T PRK00074 200 NFIEEAIEEIREQVGD-KKVILGLSGGVDSSVAAVLLHKAIGDQLTCVFVDHGLLR-KNEAEQVMEMFREHFGLNLIHVD 277 (511)
T ss_pred HHHHHHHHHHHHhcCC-CcEEEEeCCCccHHHHHHHHHHHhCCceEEEEEeCCCCC-HHHHHHHHHHHHHHcCCcEEEEc
Confidence 3778888888888875 333555666432 4455555443 5777777765533 22334333345588899988765
Q ss_pred Cc
Q psy17626 90 SH 91 (184)
Q Consensus 90 ~~ 91 (184)
-.
T Consensus 278 ~~ 279 (511)
T PRK00074 278 AS 279 (511)
T ss_pred cH
Confidence 43
No 252
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=45.99 E-value=79 Score=20.30 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=17.2
Q ss_pred cCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 52 LNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 52 ~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
-.+..||...|.++... ..+...|++.||++..+
T Consensus 28 g~~~~v~iA~Da~~~vv---~~l~~lceek~Ip~v~V 61 (84)
T PRK13600 28 DQVTSLIIAEDVEVYLM---TRVLSQINQKNIPVSFF 61 (84)
T ss_pred CCceEEEEeCCCCHHHH---HHHHHHHHHcCCCEEEE
Confidence 34555555555554422 24555555555555543
No 253
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=45.93 E-value=50 Score=28.98 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 134 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
+.....++=+.|++.|+++.++.|+.......++++.|++ +|.+
T Consensus 406 l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~-~~~~ 449 (562)
T TIGR01511 406 LRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN-VRAE 449 (562)
T ss_pred ccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc-EEcc
Confidence 3445556666778889999999999999999999999997 5543
No 254
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=45.93 E-value=69 Score=25.08 Aligned_cols=45 Identities=9% Similarity=0.157 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 42 ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 42 ~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
..+|.+|+++++. +|+-+.-+|+..+..-.|+.+.++.|+.+..+
T Consensus 135 ~~~i~~la~~~GL--~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~V 179 (248)
T PRK13703 135 RQAIAKLAEHYGL--MFFYRGQDPIDGQLAQVINDFRDTYGLSVIPV 179 (248)
T ss_pred HHHHHHHHhcceE--EEEECCCCchhHHHHHHHHHHHHHhCCeEEEE
Confidence 3557788877665 77777778888888888888888888887554
No 255
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=45.85 E-value=1e+02 Score=25.61 Aligned_cols=87 Identities=16% Similarity=0.030 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHHHhcC-CeEEEEECCh------HHHHHHHHHHcCcceEEEeec-ccchhHHHHHHHHHHHHhCCC
Q psy17626 12 RFRFLLECLADLDRQLKSHG-GQLFIVQGSP------ISIFQKLKRELNFTKLCFEQD-CEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 12 r~~fl~~sL~~L~~~L~~~g-~~L~v~~g~~------~~~l~~l~~~~~~~~v~~~~~-~~~~~~~rd~~v~~~l~~~gi 83 (184)
+..|=..++.+|.+.++++| .+..|+.|.. .+.+.+.+++.+++.++++.. ..|.....+ +..+.+++.++
T Consensus 11 ~i~~G~g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~-~~~~~~~~~~~ 89 (383)
T PRK09860 11 VNVIGADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVA-AGLKLLKENNC 89 (383)
T ss_pred eEEECcCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHH-HHHHHHHHcCC
Confidence 33344467888888899888 4666776642 234555556677876666532 234444444 34455566777
Q ss_pred eE-EEecCceeeccccc
Q psy17626 84 TV-KEFVSHTLWDPEVV 99 (184)
Q Consensus 84 ~~-~~~~~~~L~~p~~i 99 (184)
.+ ..+.+...+|-.+.
T Consensus 90 D~IiaiGGGS~iD~AK~ 106 (383)
T PRK09860 90 DSVISLGGGSPHDCAKG 106 (383)
T ss_pred CEEEEeCCchHHHHHHH
Confidence 64 55777666666544
No 256
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=45.78 E-value=67 Score=19.41 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=31.6
Q ss_pred HHHHHHHHHhc--CCeEEEEECCh--HHHHHHHHHHcCcceEEEeec
Q psy17626 20 LADLDRQLKSH--GGQLFIVQGSP--ISIFQKLKRELNFTKLCFEQD 62 (184)
Q Consensus 20 L~~L~~~L~~~--g~~L~v~~g~~--~~~l~~l~~~~~~~~v~~~~~ 62 (184)
+..+++.|+++ |..|.|+..++ .+.++.+|++.|-+-+..+.+
T Consensus 13 vl~~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~~~~~~~~ 59 (69)
T cd03420 13 ILKLKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNTLISLETE 59 (69)
T ss_pred HHHHHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHcCCEEEEEEec
Confidence 44567777765 56688887765 467999999999887766653
No 257
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=45.69 E-value=1.2e+02 Score=22.14 Aligned_cols=69 Identities=16% Similarity=0.076 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCCeEEEE---ECChHHHHHHHHHHcCcceEEEeeccc---chhHHHHHHHHHHHHhCCCeEEE
Q psy17626 18 ECLADLDRQLKSHGGQLFIV---QGSPISIFQKLKRELNFTKLCFEQDCE---ALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~---~g~~~~~l~~l~~~~~~~~v~~~~~~~---~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
+.|.---+.-+++||.=+|+ .|...--+.++++.. ..-|.....++ +.....|+.+++.|++.|..+..
T Consensus 14 ~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~ 88 (186)
T COG1751 14 ETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLT 88 (186)
T ss_pred HHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC-ceEEEEEeecccccCCceecCHHHHHHHHHcCceeee
Confidence 34555566677889975555 355555555555542 44555555554 44677789999999999987654
No 258
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=45.28 E-value=1.3e+02 Score=22.53 Aligned_cols=71 Identities=10% Similarity=0.018 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEC--ChH---HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQG--SPI---SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
..|..+-+..+++.++++|..+.+... ++. +.+..+. ..+++.|+..-...+ ..+.+.+.+.|+++..
T Consensus 11 ~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~-~~~~dgii~~~~~~~------~~~~~~~~~~~ipvv~ 83 (259)
T cd01542 11 SFSTSRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLA-RQKVDGIILLATTIT------DEHREAIKKLNVPVVV 83 (259)
T ss_pred cchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCC------HHHHHHHhcCCCCEEE
Confidence 346778888999999999999988754 333 2344443 468998888643211 1334455667898887
Q ss_pred ecC
Q psy17626 88 FVS 90 (184)
Q Consensus 88 ~~~ 90 (184)
++.
T Consensus 84 ~~~ 86 (259)
T cd01542 84 VGQ 86 (259)
T ss_pred Eec
Confidence 754
No 259
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=45.04 E-value=1e+02 Score=22.55 Aligned_cols=20 Identities=10% Similarity=0.409 Sum_probs=8.4
Q ss_pred HHHHHHHHhcCCeEEEEECC
Q psy17626 21 ADLDRQLKSHGGQLFIVQGS 40 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~g~ 40 (184)
.++=+.|++.|.++.|....
T Consensus 90 ~e~L~~l~~~g~~~~i~Sn~ 109 (199)
T PRK09456 90 IAIMHKLREQGHRVVVLSNT 109 (199)
T ss_pred HHHHHHHHhCCCcEEEEcCC
Confidence 33333444444444444433
No 260
>PRK00919 GMP synthase subunit B; Validated
Probab=45.03 E-value=1.7e+02 Score=23.74 Aligned_cols=73 Identities=11% Similarity=0.263 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECChH-HHHHHHHHH-c--CcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPI-SIFQKLKRE-L--NFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~-~~l~~l~~~-~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
-.|+-+.+..|++.+.. +.-+..+.|... .++..++.+ . ++.+|+++....+ ..--+.+++.+++. ++++.+
T Consensus 5 ~~~~~~~~~~l~~~~~~-~kVlVa~SGGVDSsvla~la~~~lG~~v~aV~vD~G~~~--~~E~e~a~~~~~~~-i~~~vv 80 (307)
T PRK00919 5 EKFIEEAIEEIREEIGD-GKAIIALSGGVDSSVAAVLAHRAIGDRLTPVFVDTGLMR--KGETERIKETFSDM-LNLRIV 80 (307)
T ss_pred HHHHHHHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHHhCCeEEEEEEECCCCC--HHHHHHHHHHHhcc-CCcEEE
Confidence 45899999999999976 556677777654 455566655 3 4667777654432 22234566666654 555444
Q ss_pred c
Q psy17626 89 V 89 (184)
Q Consensus 89 ~ 89 (184)
+
T Consensus 81 d 81 (307)
T PRK00919 81 D 81 (307)
T ss_pred E
Confidence 3
No 261
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=45.00 E-value=69 Score=19.32 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=31.2
Q ss_pred HHHHHHHHHhc--CCeEEEEECCh--HHHHHHHHHHcCcceEEEeec
Q psy17626 20 LADLDRQLKSH--GGQLFIVQGSP--ISIFQKLKRELNFTKLCFEQD 62 (184)
Q Consensus 20 L~~L~~~L~~~--g~~L~v~~g~~--~~~l~~l~~~~~~~~v~~~~~ 62 (184)
+..+++.|+++ |..|.|+..++ .+-++.++++.|-+-+...++
T Consensus 13 ~i~~k~~l~~l~~G~~l~V~~dd~~s~~di~~~~~~~g~~~~~~~~~ 59 (69)
T cd03423 13 VMMLHKKVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGHELLAQETE 59 (69)
T ss_pred HHHHHHHHHcCCCCCEEEEEeCCCchHHHHHHHHHHcCCEEEEEEEc
Confidence 45677778776 55688887654 467999999998887766554
No 262
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=44.90 E-value=70 Score=23.13 Aligned_cols=47 Identities=4% Similarity=-0.014 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHHHHcCcCeEEEccc
Q psy17626 134 LLECLADLDRQLKSHG-GQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g-~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~ 180 (184)
..-+...+++.+++++ ..+++++.|-+-+..+||.+.|++.+..-.+
T Consensus 60 C~~qvr~Fn~~aa~~~~~~Vl~IS~DLPFAq~RfC~aeGi~nv~~lSd 107 (158)
T COG2077 60 CATQVRKFNEEAAKLGNTVVLCISMDLPFAQKRFCGAEGIENVITLSD 107 (158)
T ss_pred hhHHHHHHHHHHhccCCcEEEEEeCCChhHHhhhhhhcCcccceEhhh
Confidence 4467788888998887 4577788999999999999999998765433
No 263
>PRK04017 hypothetical protein; Provisional
Probab=44.88 E-value=1.1e+02 Score=21.54 Aligned_cols=32 Identities=28% Similarity=0.492 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcC--CeEEEEECCh-HHHHHHH
Q psy17626 17 LECLADLDRQLKSHG--GQLFIVQGSP-ISIFQKL 48 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g--~~L~v~~g~~-~~~l~~l 48 (184)
++.+.++-.+|++.+ +..+|+.|.. .+.|.++
T Consensus 6 ~~~~~e~i~~L~e~s~~g~vIVVEGk~D~~~L~~l 40 (132)
T PRK04017 6 YERFEEIIEELKEFSEAGAPIIVEGKRDVESLRKL 40 (132)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCccHHHHHHHc
Confidence 455556666665543 3466778855 4555544
No 264
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=44.86 E-value=54 Score=25.52 Aligned_cols=31 Identities=10% Similarity=0.213 Sum_probs=25.5
Q ss_pred HHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 143 RQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 143 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
++|++.|+++.+..|.+...+..++++.+++
T Consensus 34 ~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 34 TRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred HHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 3466679999999999988888888888874
No 265
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=44.86 E-value=69 Score=25.25 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEe
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 60 (184)
-++|-..+.+.|+++|....++..+. .+.+..+..+++.|+..
T Consensus 21 ~~~s~~~i~~al~~~g~~v~~i~~~~--~~~~~~~~~~~D~v~~~ 63 (304)
T PRK01372 21 SLNSGAAVLAALREAGYDAHPIDPGE--DIAAQLKELGFDRVFNA 63 (304)
T ss_pred eHHhHHHHHHHHHHCCCEEEEEecCc--chHHHhccCCCCEEEEe
Confidence 34577888999999999988885442 23344455677766643
No 266
>KOG3167|consensus
Probab=44.80 E-value=37 Score=24.03 Aligned_cols=45 Identities=13% Similarity=0.315 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECC--hHHH---HHHHHHHcCcceEEEe
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGS--PISI---FQKLKRELNFTKLCFE 60 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~--~~~~---l~~l~~~~~~~~v~~~ 60 (184)
|.+++.+.++.+++=--.|.|+.|| |.++ |+.||++.++--||.-
T Consensus 60 lrrGvKevqK~vrkGeKGl~VlAgd~sPiDvi~HlP~lCEd~~vPYvy~p 109 (153)
T KOG3167|consen 60 LRRGVKEVQKRVRKGEKGLCVLAGDTSPIDVITHLPALCEDRGVPYVYTP 109 (153)
T ss_pred HHHHHHHHHHHHhcCCcceEEEecCCccHHHHhccchhhhccCCCccccc
Confidence 8899999999998844569999996 5555 6899999888766653
No 267
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=44.77 E-value=48 Score=21.58 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 11 ~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
++..++..-...+.+.|.++|+|++.-..+.-+...++.+..+..
T Consensus 32 R~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 32 RGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGFI 76 (89)
T ss_pred hcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHHCCCe
Confidence 344577788889999999999999887766667777888776653
No 268
>KOG0207|consensus
Probab=44.76 E-value=41 Score=31.27 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=35.4
Q ss_pred HHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcccc
Q psy17626 141 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181 (184)
Q Consensus 141 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~~ 181 (184)
--..|+..|+...++.||-..+-...+++.|++.||++--.
T Consensus 731 av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi~~V~aev~P 771 (951)
T KOG0207|consen 731 AVAELKSMGIKVVMLTGDNDAAARSVAQQVGIDNVYAEVLP 771 (951)
T ss_pred HHHHHHhcCceEEEEcCCCHHHHHHHHHhhCcceEEeccCc
Confidence 34467788999999999999999999999999999987543
No 269
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=44.75 E-value=99 Score=21.09 Aligned_cols=35 Identities=6% Similarity=0.085 Sum_probs=26.5
Q ss_pred HHhCCCeE---EEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 145 LKSHGGQL---FIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 145 L~~~g~~L---~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
+++.|++. .+..|+|.+.+.+.+++++++-|+...
T Consensus 74 ~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs 111 (144)
T PRK15118 74 STNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGH 111 (144)
T ss_pred HHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeC
Confidence 34456553 334699999999999999999988743
No 270
>PRK10586 putative oxidoreductase; Provisional
Probab=44.66 E-value=1.3e+02 Score=24.82 Aligned_cols=77 Identities=10% Similarity=0.098 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcC-CeEEEEECCh-HH----HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCe-EEEecC
Q psy17626 18 ECLADLDRQLKSHG-GQLFIVQGSP-IS----IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNIT-VKEFVS 90 (184)
Q Consensus 18 ~sL~~L~~~L~~~g-~~L~v~~g~~-~~----~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~-~~~~~~ 90 (184)
.++.+|.+-++++| .+.+|+.|.. .+ .+....++.++..+.+..+....... ++.+..+ .++. +..+.+
T Consensus 20 ga~~~l~~~~~~~g~~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~v~---~l~~~~~-~~~d~iiavGG 95 (362)
T PRK10586 20 GSIDHLHDFFTDEQLSRAVWIYGERAIAAAQPYLPPAFELPGAKHILFRGHCSESDVA---QLAAASG-DDRQVVIGVGG 95 (362)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHH---HHHHHhc-cCCCEEEEecC
Confidence 46777888888887 5677777743 32 23444455566555444332211111 2333222 2444 455666
Q ss_pred ceeecccc
Q psy17626 91 HTLWDPEV 98 (184)
Q Consensus 91 ~~L~~p~~ 98 (184)
...+|-.+
T Consensus 96 Gs~iD~aK 103 (362)
T PRK10586 96 GALLDTAK 103 (362)
T ss_pred cHHHHHHH
Confidence 55544443
No 271
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=44.59 E-value=1.5e+02 Score=23.24 Aligned_cols=158 Identities=11% Similarity=0.035 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChH--HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPI--SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~--~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|..+-+..+.+.+++.|..+.+... ++. ..+.+.+...+++.|++.... +.. +..+. .+.+.|+++..++
T Consensus 74 ~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-~~~---~~~~~-~l~~~~iPvV~v~ 148 (328)
T PRK11303 74 TSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSL-PPE---HPFYQ-RLQNDGLPIIALD 148 (328)
T ss_pred chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCC-CCC---hHHHH-HHHhcCCCEEEEC
Confidence 36667778888899999999888753 332 223333445689988874321 111 12233 3456789988775
Q ss_pred Cceeecc--cccccccCCCCchhHHHHHHHhhhcccccc----CcchhHHHHHHHHHHHHHHHhCCCeEEEEe-CC----
Q psy17626 90 SHTLWDP--EVVIQTNGNVPPLTYKMYLHTVSCIGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLFIVQ-GS---- 158 (184)
Q Consensus 90 ~~~L~~p--~~i~~~~~~~~~~v~~~F~~~~~~~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~-g~---- 158 (184)
... -++ ..+..++ ....+..-..... .+-.+. +...........+-..+.+++.|+...+.. ++
T Consensus 149 ~~~-~~~~~~~V~~d~---~~~~~~a~~~L~~-~G~r~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~ 223 (328)
T PRK11303 149 RAL-DREHFTSVVSDD---QDDAEMLAESLLK-FPAESILLLGALPELSVSFEREQGFRQALKDDPREVHYLYANSFERE 223 (328)
T ss_pred CCC-CCCCCCEEEeCC---HHHHHHHHHHHHH-CCCCeEEEEeCccccccHHHHHHHHHHHHHHcCCCceEEEeCCCChH
Confidence 431 111 1121111 0111111101111 111110 111111223445667778888887643332 21
Q ss_pred -hhHHHHHHHHHc-CcCeEEEcccc
Q psy17626 159 -PISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 159 -~~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
..+.+.++.++. ..++||+..|.
T Consensus 224 ~~~~~~~~~l~~~~~~~ai~~~~d~ 248 (328)
T PRK11303 224 AGAQLFEKWLETHPMPDALFTTSYT 248 (328)
T ss_pred HHHHHHHHHHcCCCCCCEEEEcCcH
Confidence 234566666554 58999987663
No 272
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=44.58 E-value=67 Score=27.26 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHcCcceEEEeeccc--chhHHHHHHHHHHHHhCCCeEEEecCc
Q psy17626 41 PISIFQKLKRELNFTKLCFEQDCE--ALWHKRDKKVKKWCAENNITVKEFVSH 91 (184)
Q Consensus 41 ~~~~l~~l~~~~~~~~v~~~~~~~--~~~~~rd~~v~~~l~~~gi~~~~~~~~ 91 (184)
-.+.+.+++++++++.|+.+---+ ++....- .+++.+++.||++..+++.
T Consensus 349 R~~~l~~li~e~~vDGVI~~~~~~C~~~s~e~~-~ik~~l~~~GIP~L~ietD 400 (430)
T TIGR03191 349 KSEMMLNIARDWNVDGCMLHLNRGCEGLSIGIM-ENRLAIAKAGIPIMTFEGN 400 (430)
T ss_pred HHHHHHHHHHHHCCCEEEEcCCCCCccchHhHH-HHHHHHHHcCCCEEEEECC
Confidence 367788999999999988775432 3333333 4677778889998887665
No 273
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=44.48 E-value=2.2e+02 Score=27.28 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCeEEEEECChH-------------------HHHHHHHHHcCcceEEEe
Q psy17626 22 DLDRQLKSHGGQLFIVQGSPI-------------------SIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v~~g~~~-------------------~~l~~l~~~~~~~~v~~~ 60 (184)
.+-+.|++.|...++...+|. +.+.+++++.+++.|+..
T Consensus 32 ~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii~~e~~D~Iip~ 89 (1066)
T PRK05294 32 QACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDAILPT 89 (1066)
T ss_pred HHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECCCCHHHHHHHHHHHCcCEEEEC
Confidence 456777888999888876663 446666667777776654
No 274
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=44.41 E-value=1.8e+02 Score=24.09 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCeEEEEEC---Ch----HHHHHHHHHHcCcceEEE
Q psy17626 19 CLADLDRQLKSHGGQLFIVQG---SP----ISIFQKLKRELNFTKLCF 59 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g---~~----~~~l~~l~~~~~~~~v~~ 59 (184)
.+..+.+.|++.|+...++.| +| .+...+++++.+++.|+.
T Consensus 47 ~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~Iia 94 (383)
T PRK09860 47 MAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVIS 94 (383)
T ss_pred cHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 355778888888888777766 33 334556677788888875
No 275
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=44.32 E-value=54 Score=24.94 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=25.1
Q ss_pred HHHhcCCeEEEEECChHHHHHHHHHHcCc
Q psy17626 26 QLKSHGGQLFIVQGSPISIFQKLKRELNF 54 (184)
Q Consensus 26 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 54 (184)
+|++.|+++.+..|.+...+..+.++.++
T Consensus 26 ~l~~~G~~~vi~TgR~~~~~~~~~~~lg~ 54 (225)
T TIGR02461 26 ELKDLGFPIVFVSSKTRAEQEYYREELGV 54 (225)
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 56778999999999998888888888775
No 276
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=44.10 E-value=1.6e+02 Score=23.31 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHH--HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPIS--IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|..+-+..+.+.+++.|..+.+... ++.. .+.+.+...+++.|.+...... .....+.+.+.|+++..++
T Consensus 77 ~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-----~~~~~~~l~~~~iPvV~~~ 151 (342)
T PRK10014 77 PFYAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAGS-----SDDLREMAEEKGIPVVFAS 151 (342)
T ss_pred chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-----cHHHHHHHhhcCCCEEEEe
Confidence 46777777888889999988877643 3322 2222334568898888642211 1233445567799988875
Q ss_pred C
Q psy17626 90 S 90 (184)
Q Consensus 90 ~ 90 (184)
.
T Consensus 152 ~ 152 (342)
T PRK10014 152 R 152 (342)
T ss_pred c
Confidence 4
No 277
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=43.75 E-value=94 Score=22.54 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
....++-.+++++|...+=++-|+.....+++++++.+
T Consensus 51 ~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 51 CDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT 88 (157)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 34556666777778888878888888888888888776
No 278
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=43.74 E-value=1.7e+02 Score=23.41 Aligned_cols=158 Identities=9% Similarity=0.126 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHhcCCe--EEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHH--HHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQ--LFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD--KKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~--L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd--~~v~~~l~~~gi~~~~~~ 89 (184)
..+...+..+.++. ++| |++=+|...+.+.+-++ .+++.|.++-.-.|++.... +++.+.+...||.++.--
T Consensus 58 ~~~~~~~~~~a~~~---~VPValHLDHg~~~e~i~~ai~-~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaEl 133 (282)
T TIGR01858 58 EYIVALCSAASTTY---NMPLALHLDHHESLDDIRQKVH-AGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAEL 133 (282)
T ss_pred HHHHHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHH-cCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 34444444444433 455 44457877666655444 59999999988888865443 667777888899887644
Q ss_pred CceeecccccccccCCC---CchhHHHHHHHh-hhc-----c-ccccCcchhHHHHHHHHHHHHHHHhCCCeEEEEe---
Q psy17626 90 SHTLWDPEVVIQTNGNV---PPLTYKMYLHTV-SCI-----G-TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ--- 156 (184)
Q Consensus 90 ~~~L~~p~~i~~~~~~~---~~~v~~~F~~~~-~~~-----~-~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~--- 156 (184)
++.=-.-+.+....... -|.--..|.+.- -.+ + .|..-...+..=++-|+++++.+ ++|| |++
T Consensus 134 G~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~---~iPL-VlHGgS 209 (282)
T TIGR01858 134 GRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV---DVPL-VLHGAS 209 (282)
T ss_pred EecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHh---CCCe-EEecCC
Confidence 44321111111000001 122233344321 111 1 13322233455567888888776 8897 566
Q ss_pred CChhHHHHHHHHHcCcCeEEEccc
Q psy17626 157 GSPISIFQKLKRELNFTKLCFEQD 180 (184)
Q Consensus 157 g~~~~~l~~l~~~~~~~~v~~n~~ 180 (184)
|-+.+.+.+. -+.||..|=.+.+
T Consensus 210 G~~~e~~~~a-i~~Gi~KiNi~T~ 232 (282)
T TIGR01858 210 DVPDEDVRRT-IELGICKVNVATE 232 (282)
T ss_pred CCCHHHHHHH-HHcCCeEEEeCcH
Confidence 4556666665 5789998855544
No 279
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=43.63 E-value=61 Score=20.89 Aligned_cols=9 Identities=0% Similarity=-0.330 Sum_probs=4.3
Q ss_pred cCcceEEEe
Q psy17626 52 LNFTKLCFE 60 (184)
Q Consensus 52 ~~~~~v~~~ 60 (184)
.+++-++++
T Consensus 70 ~g~~l~l~~ 78 (100)
T cd06844 70 VGGQFVLTG 78 (100)
T ss_pred cCCEEEEEC
Confidence 455444444
No 280
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=43.48 E-value=1.7e+02 Score=23.43 Aligned_cols=158 Identities=10% Similarity=0.108 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHhcCCe--EEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHH--HHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQ--LFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD--KKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~--L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd--~~v~~~l~~~gi~~~~~~ 89 (184)
.++...+..+.++. ++| |++=+|...+.+.+-+ +.+++.|.++-.-.|++.... +++.+.+...||.++.--
T Consensus 60 ~~~~~~~~~~a~~~---~VPValHLDHg~~~e~i~~ai-~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaEl 135 (286)
T PRK12738 60 EEIYALCSAYSTTY---NMPLALHLDHHESLDDIRRKV-HAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAEL 135 (286)
T ss_pred HHHHHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHH-HcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 34444455554443 455 5555788777776644 569999999988888865443 677778888899887644
Q ss_pred CceeecccccccccCCC---CchhHHHHHHHh-hhc-----c-ccccCcchhHHHHHHHHHHHHHHHhCCCeEEEEe---
Q psy17626 90 SHTLWDPEVVIQTNGNV---PPLTYKMYLHTV-SCI-----G-TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ--- 156 (184)
Q Consensus 90 ~~~L~~p~~i~~~~~~~---~~~v~~~F~~~~-~~~-----~-~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~--- 156 (184)
++.=-.-+.+....... -|.--..|.+.- -.+ + .|..-...+..-++.|+++++.+ ++|| |++
T Consensus 136 G~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~---~vPL-VLHGgS 211 (286)
T PRK12738 136 GRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV---DVPL-VLHGAS 211 (286)
T ss_pred EeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHh---CCCE-EEeCCC
Confidence 44321111110000001 122233344321 111 1 12222233455577888888876 8998 566
Q ss_pred CChhHHHHHHHHHcCcCeEEEccc
Q psy17626 157 GSPISIFQKLKRELNFTKLCFEQD 180 (184)
Q Consensus 157 g~~~~~l~~l~~~~~~~~v~~n~~ 180 (184)
|-|.+.+.+ +-+.||..|=.+.+
T Consensus 212 G~~~e~~~k-ai~~GI~KiNi~T~ 234 (286)
T PRK12738 212 DVPDEFVRR-TIELGVTKVNVATE 234 (286)
T ss_pred CCCHHHHHH-HHHcCCeEEEeCcH
Confidence 445565654 46889998865544
No 281
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=43.42 E-value=54 Score=24.68 Aligned_cols=129 Identities=16% Similarity=0.214 Sum_probs=67.3
Q ss_pred CeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCceeecccccccccCCCCchhH
Q psy17626 32 GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTY 111 (184)
Q Consensus 32 ~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~~~~~~~v~ 111 (184)
...++..-+|...++.+++ .+++.|.+|-+...... .+.+..++.|+++-. .+.|++ +...+
T Consensus 60 ~DvHLMv~~P~~~i~~~~~-~g~~~i~~H~E~~~~~~----~~i~~ik~~g~k~Gi-----alnP~T--------~~~~~ 121 (201)
T PF00834_consen 60 LDVHLMVENPERYIEEFAE-AGADYITFHAEATEDPK----ETIKYIKEAGIKAGI-----ALNPET--------PVEEL 121 (201)
T ss_dssp EEEEEESSSGGGHHHHHHH-HT-SEEEEEGGGTTTHH----HHHHHHHHTTSEEEE-----EE-TTS---------GGGG
T ss_pred EEEEeeeccHHHHHHHHHh-cCCCEEEEcccchhCHH----HHHHHHHHhCCCEEE-----EEECCC--------CchHH
Confidence 3456667789888888654 68899999987554333 233445667877532 233433 22222
Q ss_pred HHHHHHhhhc--cccccCcchhHHHHHH---HHHHHHHHHhCCCeEEE-EeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 112 KMYLHTVSCI--GTMHIGYNRFRFLLEC---LADLDRQLKSHGGQLFI-VQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 112 ~~F~~~~~~~--~~~~~~~~r~~fl~~~---L~~L~~~L~~~g~~L~v-~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
..|....... -...+|..-+.|+..+ ++.+++-+.+.|..+.+ +.|.....-...+.+.|++.++..
T Consensus 122 ~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~G 194 (201)
T PF00834_consen 122 EPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAGADIFVAG 194 (201)
T ss_dssp TTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--EEEES
T ss_pred HHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 2232222221 1123355555666554 55566667776766555 456654433344568888887754
No 282
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=43.33 E-value=1.1e+02 Score=22.17 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=52.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCeEEEEEC-----ChH---HHHHHHHHHcCcceEEEeecccchhHH---HHHHHHHHH
Q psy17626 10 YNRFRFLLECLADLDRQLKSHGGQLFIVQG-----SPI---SIFQKLKRELNFTKLCFEQDCEALWHK---RDKKVKKWC 78 (184)
Q Consensus 10 ~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g-----~~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~---rd~~v~~~l 78 (184)
...+..+.++|..|.+.+++.|+.+.+-.. ... +.+.+++++.+-+.+.+.-|....... ..+.++...
T Consensus 104 ~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~D~~h~~~~~~~~~~~i~~~~ 183 (213)
T PF01261_consen 104 EENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDSPNVGICFDTGHLIMAGEDPDEAIKRLA 183 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTTTEEEEEEHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcCCCcceEEEehHHHHHcCCCHHHHHHHhh
Confidence 467889999999999999999999877632 122 889999999998889999888765433 334444444
Q ss_pred H
Q psy17626 79 A 79 (184)
Q Consensus 79 ~ 79 (184)
+
T Consensus 184 ~ 184 (213)
T PF01261_consen 184 P 184 (213)
T ss_dssp H
T ss_pred c
Confidence 3
No 283
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=43.09 E-value=1.1e+02 Score=20.93 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCe--EEEEeC-ChhHHHHHHHHHcCcCeEEEc
Q psy17626 136 ECLADLDRQLKSHGGQ--LFIVQG-SPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~--L~v~~g-~~~~~l~~l~~~~~~~~v~~n 178 (184)
+.|+...+.+.+.|.+ ..+..| ++.+.|.+.+++++++-|+.-
T Consensus 65 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~G 110 (146)
T cd01989 65 ELLLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMG 110 (146)
T ss_pred HHHHHHHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEe
Confidence 4455555555555653 445555 889999999999999998864
No 284
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=43.00 E-value=63 Score=25.01 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC---ChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHH--HHHhCCCeEE
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQG---SPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKK--WCAENNITVK 86 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g---~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~--~l~~~gi~~~ 86 (184)
=-.+.|.+|++.|+++|++..++-. |..+.+..++..-.++-| -=+ +|+--.....+++ -|+++|+...
T Consensus 120 ~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmV-QIK--tPDLGgi~ntieAvlyCk~~gvgaY 193 (248)
T PF07476_consen 120 AQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMV-QIK--TPDLGGINNTIEAVLYCKEHGVGAY 193 (248)
T ss_dssp HHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEE-EE---GGGGSSTHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEE-Eec--CCCccchhhHHHHHHHHHhcCCcee
Confidence 4578999999999999999988854 677888888876555444 222 4554444555555 4677887554
No 285
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=42.99 E-value=1.7e+02 Score=23.35 Aligned_cols=70 Identities=17% Similarity=0.323 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCC---eEEEEECC----------hHHHHHHHHHHcCcceEE----------------------Eeec
Q psy17626 18 ECLADLDRQLKSHGG---QLFIVQGS----------PISIFQKLKRELNFTKLC----------------------FEQD 62 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~---~L~v~~g~----------~~~~l~~l~~~~~~~~v~----------------------~~~~ 62 (184)
..+..+.++|+++|. .|++++=. ....+.++.++-.+..|- -.-+
T Consensus 86 ~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe 165 (280)
T COG0656 86 ETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIE 165 (280)
T ss_pred hHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEE
Confidence 567788888888886 46766522 223444444443333332 2234
Q ss_pred ccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 63 CEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 63 ~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
|.|+.++.+ +..+|+++||.+..+.
T Consensus 166 ~hp~~~q~e--l~~~~~~~gI~v~Ays 190 (280)
T COG0656 166 YHPYLRQPE--LLPFCQRHGIAVEAYS 190 (280)
T ss_pred eccCCCcHH--HHHHHHHcCCEEEEEC
Confidence 455555544 8889999999888764
No 286
>cd00221 Vsr Very Short Patch Repair (Vsr) Endonuclease. Endonucleases in DNA repair that recognize damaged DNA and cleave the phosphodiester backbone. Vsr endonucleases have a common endonuclease topology that has been tailored for recognition of TG mismatches.
Probab=42.97 E-value=60 Score=22.12 Aligned_cols=26 Identities=15% Similarity=0.022 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHhCCCeEEEecCc
Q psy17626 66 LWHKRDKKVKKWCAENNITVKEFVSH 91 (184)
Q Consensus 66 ~~~~rd~~v~~~l~~~gi~~~~~~~~ 91 (184)
....||....+.|++.|-.+..++.+
T Consensus 88 ~~~~rD~~r~~~L~~~GW~ViRvw~~ 113 (115)
T cd00221 88 RNVERDRRVQAALERLGWRVLRVWEC 113 (115)
T ss_pred HHHHHHHHHHHHHHHCcCEEEEEeCC
Confidence 45688888889999999999988764
No 287
>PRK14057 epimerase; Provisional
Probab=42.93 E-value=1.6e+02 Score=23.11 Aligned_cols=135 Identities=9% Similarity=0.075 Sum_probs=77.2
Q ss_pred eEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCceeecccccccccCCCCchhHH
Q psy17626 33 QLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYK 112 (184)
Q Consensus 33 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~~~~~~~v~~ 112 (184)
..++..-+|...++.+++ .+++.|.+|-|.+.+- .++-+.+++.|++... +.--..++-..+. ++|...+.
T Consensus 79 DvHLMV~~P~~~i~~~~~-aGad~It~H~Ea~~~~----~~~l~~Ir~~G~k~~~--~~~~~kaGlAlnP--~Tp~e~i~ 149 (254)
T PRK14057 79 DVHLMVADQWTAAQACVK-AGAHCITLQAEGDIHL----HHTLSWLGQQTVPVIG--GEMPVIRGISLCP--ATPLDVII 149 (254)
T ss_pred eEEeeeCCHHHHHHHHHH-hCCCEEEEeeccccCH----HHHHHHHHHcCCCccc--ccccceeEEEECC--CCCHHHHH
Confidence 345555688888888876 5899999998865432 2233445566764211 0000112322222 24667777
Q ss_pred HHHHHhhhcc--ccccCcchhHHHHHHHHHHH---HHHHhCCCeEE-EEeCChh-HHHHHHHHHcCcCeEEE
Q psy17626 113 MYLHTVSCIG--TMHIGYNRFRFLLECLADLD---RQLKSHGGQLF-IVQGSPI-SIFQKLKRELNFTKLCF 177 (184)
Q Consensus 113 ~F~~~~~~~~--~~~~~~~r~~fl~~~L~~L~---~~L~~~g~~L~-v~~g~~~-~~l~~l~~~~~~~~v~~ 177 (184)
++........ ...+|..-+.|+..+++.++ +-+.+.|.... -+.|... +.+. .+.+.|++.++.
T Consensus 150 ~~l~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~-~l~~aGad~~V~ 220 (254)
T PRK14057 150 PILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLP-SLIAQGIDRVVS 220 (254)
T ss_pred HHHHhCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHH-HHHHCCCCEEEE
Confidence 7776554432 24556666778877666655 45556665533 3566654 4455 456788886654
No 288
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=42.88 E-value=84 Score=21.43 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=6.9
Q ss_pred HHHHHHHHHhcCCeEEEE
Q psy17626 20 LADLDRQLKSHGGQLFIV 37 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~ 37 (184)
|.++.+++.+.|+.++.+
T Consensus 46 l~~~~~~~~~~~v~vv~V 63 (149)
T cd02970 46 LSKLLPELDALGVELVAV 63 (149)
T ss_pred HHHHHHHHHhcCeEEEEE
Confidence 333333333334433333
No 289
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=42.81 E-value=80 Score=22.96 Aligned_cols=38 Identities=8% Similarity=0.097 Sum_probs=24.9
Q ss_pred CcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 53 NFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 53 ~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
++..|+.+..+.+....-.+.+++.+++.||+++...-
T Consensus 29 ~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~ 66 (182)
T PF01171_consen 29 KLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRI 66 (182)
T ss_dssp EEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE-
T ss_pred CeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEe
Confidence 46677777776655555557788888888888776543
No 290
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=42.71 E-value=98 Score=22.82 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=24.7
Q ss_pred HHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 143 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 143 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
.++++.|+.+.|++...+.-+..+++..|+.-|+..
T Consensus 56 ~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A 91 (175)
T COG2179 56 AELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRA 91 (175)
T ss_pred HHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecc
Confidence 345666777777777667777777777777766643
No 291
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=42.60 E-value=1.3e+02 Score=21.82 Aligned_cols=65 Identities=11% Similarity=0.225 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhcCCe--EEEEEC----ChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 15 FLLECLADLDRQLKSHGGQ--LFIVQG----SPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~--L~v~~g----~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
-....|..+.++|.+.|.+ ++.+.= +.+++|.+.++.++.+-..+.-+. ..+++..+..++.+..
T Consensus 70 ~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~~~~~~~~ltg~~--------~~i~~l~~~~~v~~~~ 140 (174)
T PF02630_consen 70 TTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAKKFGPDFIGLTGSR--------EEIEELAKQFGVYYEK 140 (174)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHCHTTTCEEEEEEH--------HHHHHHHHHCTHCEEE
T ss_pred HHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHHhcCCCcceeEeCH--------HHHHHHHHHHHhhhcc
Confidence 3456677777777766544 444443 557899999999988877665321 1344444555665543
No 292
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=42.56 E-value=93 Score=20.12 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=5.9
Q ss_pred HHHHHHHhCCC
Q psy17626 73 KVKKWCAENNI 83 (184)
Q Consensus 73 ~v~~~l~~~gi 83 (184)
.+++.++..|+
T Consensus 82 ~v~~~l~~~gl 92 (106)
T TIGR02886 82 AVKRLFELSGL 92 (106)
T ss_pred HHHHHHHHhCC
Confidence 45555555554
No 293
>PRK12686 carbamate kinase; Reviewed
Probab=42.52 E-value=1.3e+02 Score=24.48 Aligned_cols=75 Identities=15% Similarity=0.050 Sum_probs=47.0
Q ss_pred HhcCCeEEEEECChHHHHHHHHHHcCcceEE-----------EeecccchhHHHHHHHHHHHHhCCC--eEEEecCceee
Q psy17626 28 KSHGGQLFIVQGSPISIFQKLKRELNFTKLC-----------FEQDCEALWHKRDKKVKKWCAENNI--TVKEFVSHTLW 94 (184)
Q Consensus 28 ~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~-----------~~~~~~~~~~~rd~~v~~~l~~~gi--~~~~~~~~~L~ 94 (184)
.+.|.++.|.||+-+.+=--+.+...+...+ .++.+- ..--.+.+++.|.+.++ ++...-..+++
T Consensus 39 ~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~~~~~~pl~~~~a~sqg~i--Gy~~~q~l~~~l~~r~~~~~v~~vvtqv~V 116 (312)
T PRK12686 39 IEAGHDIVITHGNGPQVGNLLLQQAESNSNKVPAMPLDTCVAMSQGMI--GYWLQNALNNELTERGIDKPVITLVTQVEV 116 (312)
T ss_pred HHCCCEEEEEeCCcHHHHHHHHHHHhccccCCCCCChhhhhhhccchh--hHHHHHHHHHHHHhcCCCCCceEEEEEEEE
Confidence 4559999999998776643333333343332 112122 34445567777776554 46777788999
Q ss_pred cccccccccC
Q psy17626 95 DPEVVIQTNG 104 (184)
Q Consensus 95 ~p~~i~~~~~ 104 (184)
++++..+.+.
T Consensus 117 d~~d~af~~p 126 (312)
T PRK12686 117 DKDDPAFANP 126 (312)
T ss_pred CCCChhhcCC
Confidence 9999888653
No 294
>smart00500 SFM Splicing Factor Motif, present in Prp18 and Pr04.
Probab=42.44 E-value=62 Score=18.06 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCCeEEEEeCChhHHHHHHHH
Q psy17626 139 ADLDRQLKSHGGQLFIVQGSPISIFQKLKR 168 (184)
Q Consensus 139 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~ 168 (184)
.++...|+++|-|..++-.+..+...+|.+
T Consensus 4 ~eV~~~LR~lgePi~lFGE~~~~Rr~RL~~ 33 (44)
T smart00500 4 SEVIRRLRELGEPITLFGEDDQERRQRLRQ 33 (44)
T ss_pred HHHHHHHHHcCCCeeecCCChHHHHHHHHH
Confidence 457788999999999886666676666643
No 295
>PRK10671 copA copper exporting ATPase; Provisional
Probab=42.34 E-value=71 Score=29.54 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=34.6
Q ss_pred HHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 140 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 140 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
+.-+.|++.|+.+.++.||.......++++.|+++++.+.
T Consensus 657 ~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~~~~~~ 696 (834)
T PRK10671 657 AALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGV 696 (834)
T ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCEEEeCC
Confidence 3446778889999999999999999999999999988764
No 296
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=42.32 E-value=1.4e+02 Score=22.09 Aligned_cols=75 Identities=21% Similarity=0.339 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc-eEEEeeccc------------chhHHHHHHHHHHHHhCCCeE
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT-KLCFEQDCE------------ALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~-~v~~~~~~~------------~~~~~rd~~v~~~l~~~gi~~ 85 (184)
++..|+ +|.+.|+.+.+..|.+...+..+..++++. -+.+..... +-....-..+-+.+.+.++.+
T Consensus 20 ~~~al~-~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~i~~~~~~~l~~~~i~~~~~~~i~~~~~~~~~~~ 98 (254)
T PF08282_consen 20 TIEALK-ELQEKGIKLVIATGRSYSSIKRLLKELGIDDYFICSNGALIDDPKGKILYEKPIDSDDVKKILKYLKEHNISF 98 (254)
T ss_dssp HHHHHH-HHHHTTCEEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTEEEETTTEEEEEESB-HHHHHHHHHHHHHTTCEE
T ss_pred HHHHHH-hhcccceEEEEEccCcccccccccccccchhhhcccccceeeecccccchhhheeccchhheeehhhhccccc
Confidence 344444 366689999999999999999999988876 322222211 112333456667777778877
Q ss_pred EEecCceee
Q psy17626 86 KEFVSHTLW 94 (184)
Q Consensus 86 ~~~~~~~L~ 94 (184)
..+.....+
T Consensus 99 ~~~~~~~~~ 107 (254)
T PF08282_consen 99 FFYTDDDIY 107 (254)
T ss_dssp EEEESSEEE
T ss_pred ccccceeee
Confidence 766544333
No 297
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=42.30 E-value=1.4e+02 Score=24.19 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 174 (184)
.++.++=+.|++.|+++.+..+..........++.|++.
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~ 187 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDR 187 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCc
Confidence 455566667778899999998777777778888999984
No 298
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=42.28 E-value=1.4e+02 Score=22.07 Aligned_cols=72 Identities=14% Similarity=0.197 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC--h---HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGS--P---ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~--~---~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.|..+-...+++.++++|..+.+...+ + .+.+..+++. +++.|+....-.. ... ....+...|+++..+
T Consensus 12 ~~~~~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~~~~-~~~----~~~~l~~~~ip~v~~ 85 (264)
T cd01537 12 PFFAQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIAR-GVDGIIIAPSDLT-APT----IVKLARKAGIPVVLV 85 (264)
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHc-CCCEEEEecCCCc-chh----HHHHhhhcCCCEEEe
Confidence 466777778888888899999888543 2 3445555544 8888887542221 111 234556779998887
Q ss_pred cCc
Q psy17626 89 VSH 91 (184)
Q Consensus 89 ~~~ 91 (184)
+..
T Consensus 86 ~~~ 88 (264)
T cd01537 86 DRD 88 (264)
T ss_pred ccC
Confidence 654
No 299
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=42.25 E-value=1.6e+02 Score=22.78 Aligned_cols=96 Identities=13% Similarity=0.102 Sum_probs=52.0
Q ss_pred HHHHHHHhCC-CeEEEecCceeecccccccccCCCCchh--HH-----HHHHHhhhccccccCcchhHHHHHHHHHHHHH
Q psy17626 73 KVKKWCAENN-ITVKEFVSHTLWDPEVVIQTNGNVPPLT--YK-----MYLHTVSCIGTMHIGYNRFRFLLECLADLDRQ 144 (184)
Q Consensus 73 ~v~~~l~~~g-i~~~~~~~~~L~~p~~i~~~~~~~~~~v--~~-----~F~~~~~~~~~~~~~~~r~~fl~~~L~~L~~~ 144 (184)
+|++.|+... +.+..--|.||++...... .|.+.+.- +. .|+..+.+...... . ......++-..
T Consensus 53 ~~~~~~~~~~p~aViFDlDgTLlDSs~~~~-~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s-~-----p~~~a~elL~~ 125 (237)
T TIGR01672 53 QIENSLEGRPPIAVSFDIDDTVLFSSPGFW-RGKKTFSPGSEDYLKNQVFWEKVNNGWDEFS-I-----PKEVARQLIDM 125 (237)
T ss_pred HHHHhcCCCCCeEEEEeCCCccccCcHHHh-CCcccCCHHHhhhhcChHHHHHHHHhcccCC-c-----chhHHHHHHHH
Confidence 6777776432 2455556777777766431 12111110 11 23333333321111 0 11125566667
Q ss_pred HHhCCCeEEEEeCC----hhHHHHHHHHHcCcCeE
Q psy17626 145 LKSHGGQLFIVQGS----PISIFQKLKRELNFTKL 175 (184)
Q Consensus 145 L~~~g~~L~v~~g~----~~~~l~~l~~~~~~~~v 175 (184)
|.+.|+++.++.+. .......+.+.+|+.+.
T Consensus 126 l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~ 160 (237)
T TIGR01672 126 HQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAM 160 (237)
T ss_pred HHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchh
Confidence 77889999999876 56677778888888753
No 300
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=42.14 E-value=89 Score=19.78 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 43 SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 43 ~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
+++..+ ++-++..|+...|.++. .-+.+...|+..+|++..+.+
T Consensus 18 ~v~kai-~~gkaklViiA~D~~~~---~~~~i~~~c~~~~Vp~~~~~s 61 (82)
T PRK13602 18 QTVKAL-KRGSVKEVVVAEDADPR---LTEKVEALANEKGVPVSKVDS 61 (82)
T ss_pred HHHHHH-HcCCeeEEEEECCCCHH---HHHHHHHHHHHcCCCEEEECC
Confidence 334443 44678888888887763 333667777888888877653
No 301
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=42.05 E-value=92 Score=21.23 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
...|.++.+++.+.|+.++.+.-+..+....++++++.+
T Consensus 43 ~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~ 81 (149)
T cd02970 43 LRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLP 81 (149)
T ss_pred HHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCC
Confidence 355777888888888888887766666666777777664
No 302
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=41.98 E-value=1.3e+02 Score=23.66 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 43 SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 43 ~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
+.+..++++.+++.|+=. ..|+....-+.+.+.|++.||++..|.
T Consensus 55 ~~l~~~l~~~~i~~VIDA--tHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 55 QELREFLKRHSIDILVDA--THPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred HHHHHHHHhcCCCEEEEc--CCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 448899999999977543 358888888899999999999998884
No 303
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=41.89 E-value=88 Score=21.79 Aligned_cols=41 Identities=12% Similarity=0.022 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEE
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 176 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~ 176 (184)
..|.++.+++++.|..++-+.-+..+.+.+++++++++--+
T Consensus 51 ~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~ 91 (154)
T PRK09437 51 CGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTL 91 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeE
Confidence 34666666777667766666555556677777777665433
No 304
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=41.87 E-value=47 Score=24.31 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=27.1
Q ss_pred HHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEE
Q psy17626 143 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 176 (184)
Q Consensus 143 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~ 176 (184)
+.|++.|+++.|+.+.+...+..+.+..|+...|
T Consensus 116 ~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f 149 (197)
T TIGR01548 116 RELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILF 149 (197)
T ss_pred HHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhC
Confidence 4456679999999998888888888888877654
No 305
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=41.85 E-value=23 Score=21.55 Aligned_cols=45 Identities=27% Similarity=0.243 Sum_probs=26.5
Q ss_pred HHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCceee
Q psy17626 47 KLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLW 94 (184)
Q Consensus 47 ~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~ 94 (184)
.|-....+..||+.++ ....+-..+.+.+.+.|+++..+....|-
T Consensus 11 aL~~~~~i~~l~~~~~---~~~~~~~~i~~~~~~~~i~v~~v~~~~l~ 55 (76)
T PF08032_consen 11 ALKSGPRIKKLFVTEE---KADKRIKEILKLAKKKGIPVYEVSKKVLD 55 (76)
T ss_dssp HHHCTGGEEEEEEETT------CCTHHHHHHHHHCT-EEEEE-HHHHH
T ss_pred HHcCCCCccEEEEEcC---ccchhHHHHHHHHHHcCCeEEEeCHHHHH
Confidence 3444455899999886 11222245666677789999987666543
No 306
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=41.74 E-value=95 Score=24.22 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEe-CChhHHHHHHHHHcCcCeEEEc
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQ-GSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~-g~~~~~l~~l~~~~~~~~v~~n 178 (184)
.+.|.++.+.+++.|+..++.+ ..+...+..++++.|+..+..+
T Consensus 203 ~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld 247 (266)
T cd01018 203 PADLKRLIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKVVTID 247 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeC
Confidence 3567778888888888877765 3445667788888888776654
No 307
>PF00867 XPG_I: XPG I-region; InterPro: IPR006086 This entry represents endonucleases that cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA. The endonuclease binds 2 magnesium ions per subunit. which probably participate in the reaction catalyzed by the enzyme. May bind an additional third magnesium ion after substrate binding.; GO: 0004518 nuclease activity, 0006281 DNA repair; PDB: 1UL1_Z 3Q8K_A 3Q8M_A 3Q8L_A 2IZO_A 1A77_A 1A76_A 3QEA_Z 3QE9_Y 3QEB_Z ....
Probab=41.63 E-value=43 Score=21.64 Aligned_cols=32 Identities=13% Similarity=-0.010 Sum_probs=23.3
Q ss_pred hCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 147 SHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 147 ~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
..|++..+..+++...+..|++.--|+.|+++
T Consensus 2 ~~gv~~i~AP~EAeAq~A~L~~~g~vd~V~t~ 33 (94)
T PF00867_consen 2 LMGVPYIVAPYEAEAQCAYLERNGLVDAVITE 33 (94)
T ss_dssp HHT-EEEE-SS-HHHHHHHHHHTTSSSEEE-S
T ss_pred CCCCeEEEcCchHHHHHHHHHHhcceeEEEec
Confidence 45899999999999999998877777888766
No 308
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=41.62 E-value=1.2e+02 Score=24.57 Aligned_cols=46 Identities=13% Similarity=0.032 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc----eEEEeecc
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT----KLCFEQDC 63 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~----~v~~~~~~ 63 (184)
.++.++=++|+++|+++.|..+...+......++.+++ .|..+.+.
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~Gdv 198 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISGGHK 198 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEECCcc
Confidence 34445555667789999999887777777888888888 45555544
No 309
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.50 E-value=1.5e+02 Score=22.30 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHH--HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPIS--IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|..+-+..+.+.+++.|..+.+... ++.. .+.+.+...+++.|++........ .. .+.+.|+++..++
T Consensus 12 ~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~--~~-----~~~~~~iPvV~~~ 84 (263)
T cd06280 12 PFFTAVSRAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPTRATLR--RL-----AELRLSFPVVLID 84 (263)
T ss_pred ccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCch--HH-----HHHhcCCCEEEEC
Confidence 46666777888889999999988754 3332 233455567899888864322111 11 1245689988876
Q ss_pred Cc
Q psy17626 90 SH 91 (184)
Q Consensus 90 ~~ 91 (184)
..
T Consensus 85 ~~ 86 (263)
T cd06280 85 RA 86 (263)
T ss_pred CC
Confidence 43
No 310
>PRK08105 flavodoxin; Provisional
Probab=41.46 E-value=1.3e+02 Score=21.33 Aligned_cols=66 Identities=9% Similarity=0.055 Sum_probs=42.9
Q ss_pred CCCchhHHHHHHHhhhccc---------cccCcchhHHHHHHHHHHHHHHHhCCCeEEEEe--C------ChhHHHHHHH
Q psy17626 105 NVPPLTYKMYLHTVSCIGT---------MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ--G------SPISIFQKLK 167 (184)
Q Consensus 105 ~~~~~v~~~F~~~~~~~~~---------~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~--g------~~~~~l~~l~ 167 (184)
|++|.....|+........ -..|.............+.+.|+++|...+.-. + ++...+..++
T Consensus 62 Ge~p~~~~~f~~~l~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~ 141 (149)
T PRK08105 62 GDLPDSIVPLFQALKDTAGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWV 141 (149)
T ss_pred CCCChhHHHHHHHHHhcCcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHH
Confidence 4789888888766654310 112344555677888899999999998755422 2 3456777777
Q ss_pred HHc
Q psy17626 168 REL 170 (184)
Q Consensus 168 ~~~ 170 (184)
+++
T Consensus 142 ~~~ 144 (149)
T PRK08105 142 EQW 144 (149)
T ss_pred HHH
Confidence 664
No 311
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=41.33 E-value=53 Score=25.78 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCCCeEEEE--eCChhHHHHHHHHHc--CcCeEEEc
Q psy17626 136 ECLADLDRQLKSHGGQLFIV--QGSPISIFQKLKREL--NFTKLCFE 178 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~--~g~~~~~l~~l~~~~--~~~~v~~n 178 (184)
++++++-++|++ +..+.|+ +.+....-..+.... +|+.|+-.
T Consensus 128 ~~~~~~v~~lk~-~~D~IIV~~H~g~tsEk~ala~~ldg~VdvIvGt 173 (255)
T cd07382 128 RAADELLEELKE-EADIIFVDFHAEATSEKIALGWYLDGRVSAVVGT 173 (255)
T ss_pred HHHHHHHHHHhc-CCCEEEEEECCCCCHHHHHHHHhCCCCceEEEeC
Confidence 456666666665 6666665 444433222344443 37777643
No 312
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=41.30 E-value=75 Score=20.68 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=36.2
Q ss_pred chhHHHHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe
Q psy17626 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174 (184)
Q Consensus 129 ~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 174 (184)
++..++..-...+.+.|.++|+|++.-..+.-+...++.+..|...
T Consensus 32 R~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~~~ 77 (89)
T PF08444_consen 32 RGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGFIF 77 (89)
T ss_pred hcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHHCCCee
Confidence 4456777788888999999999999877777777888887776544
No 313
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=41.24 E-value=73 Score=26.47 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHcCcceEEEeeccc--chhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 41 PISIFQKLKRELNFTKLCFEQDCE--ALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 41 ~~~~l~~l~~~~~~~~v~~~~~~~--~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
-.+.|.+++++++++.|+...--. ++.... -.+++.+++.||++..+
T Consensus 309 R~~~i~~lvke~~aDGVI~~~~~~C~~~~~e~-~~lk~~l~e~GIP~L~i 357 (380)
T TIGR02263 309 KGKYLLDQVRKNAAEGVIFAAPSFCDPALLER-PMLAARCKEHGIPQIAF 357 (380)
T ss_pred HHHHHHHHHHHhCCCEEEEhHhhcCChhhhhH-HHHHHHHHHCCCCEEEE
Confidence 346677788888888777654332 233322 25566667778887665
No 314
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=41.20 E-value=1.3e+02 Score=21.45 Aligned_cols=69 Identities=9% Similarity=-0.080 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCeEEEEEC-ChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 11 NRFRFLLECLADLDRQLKSHGGQLFIVQG-SPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 11 ~r~~fl~~sL~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
++..|+...|++ .|...+..-. .+.+.+...+-+.+++.|..+--++. ...--..+.+.|++.|+.-..
T Consensus 27 ~gakvia~~l~d-------~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~-h~~l~~~lve~lre~G~~~i~ 96 (143)
T COG2185 27 RGAKVIARALAD-------AGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGG-HLTLVPGLVEALREAGVEDIL 96 (143)
T ss_pred cchHHHHHHHHh-------CCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccch-HHHHHHHHHHHHHHhCCcceE
Confidence 344455555444 4655444311 34455555556678888888765443 344445778888888886554
No 315
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=41.04 E-value=99 Score=26.07 Aligned_cols=47 Identities=9% Similarity=-0.015 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 42 ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 42 ~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
.+.+.+++++++++.|+..-.. ...++-.++.+.|++.|+++....+
T Consensus 177 ~~~l~~~i~~~~id~ViIa~p~--~~~~~~~~ll~~~~~~gv~V~~vP~ 223 (445)
T TIGR03025 177 LDDLVELVRAHRVDEVIIALPL--SEEARILELLLQLRDLGVDVRLVPD 223 (445)
T ss_pred HHHHHHHHHhCCCCEEEEecCc--ccHHHHHHHHHHHHhcCCEEEEeCc
Confidence 3568899999999999997532 2333344666778888988876554
No 316
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=41.03 E-value=1.7e+02 Score=22.72 Aligned_cols=50 Identities=16% Similarity=-0.002 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEe-----CChhHHHHHHHHHcCcCeEEEcccc
Q psy17626 132 RFLLECLADLDRQLKSHGGQLFIVQ-----GSPISIFQKLKRELNFTKLCFEQDC 181 (184)
Q Consensus 132 ~fl~~~L~~L~~~L~~~g~~L~v~~-----g~~~~~l~~l~~~~~~~~v~~n~~~ 181 (184)
..+.+.|..+....++.|+.+.+-. ....+...+++++.+-..+-.+-|+
T Consensus 134 ~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~ll~~v~~~~lgl~~D~ 188 (283)
T PRK13209 134 RRFIDGLKESVELASRASVTLAFEIMDTPFMNSISKALGYAHYLNSPWFQLYPDI 188 (283)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHHHHHHHHHhCCCccceEecc
Confidence 4556777777777778888877743 1123345567777766666555553
No 317
>smart00475 53EXOc 5'-3' exonuclease.
Probab=40.88 E-value=1.2e+02 Score=23.76 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeC-ChhHHHHHHHHHc---CcCeEEEcccc
Q psy17626 134 LLECLADLDRQLKSHGGQLFIVQG-SPISIFQKLKREL---NFTKLCFEQDC 181 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~~---~~~~v~~n~~~ 181 (184)
+.+.+..+++-|+..|++.+...| ++.+++..++... |...+.+..|.
T Consensus 82 L~~q~~~~~~~l~~~gi~~i~~~g~EADD~iatla~~~~~~g~~~~IvS~Dk 133 (259)
T smart00475 82 LLEQIPLIKELLDALGIPVLEVEGYEADDVIATLAKKAEAEGYEVRIVSGDK 133 (259)
T ss_pred HHHHHHHHHHHHHHCCCCEEeeCCcCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 666678888889999999888888 8888888887764 44455555443
No 318
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=40.86 E-value=1.7e+02 Score=22.53 Aligned_cols=30 Identities=17% Similarity=0.407 Sum_probs=25.4
Q ss_pred HHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 26 QLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 26 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
+|++.|+.+.+..|.+...+..+.++.+++
T Consensus 31 ~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 31 AARAKGVNVVLTTGRPYAGVHRYLKELHME 60 (270)
T ss_pred HHHHCCCEEEEecCCChHHHHHHHHHhCCC
Confidence 356679999999999999888888888764
No 319
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=40.58 E-value=1.7e+02 Score=22.46 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=41.6
Q ss_pred HHHhcCCeEEEEECChHHHHHHHHHHcCcce--EEEeecc------------cchhHHHHHHHHHHHHhCCCeEEEecCc
Q psy17626 26 QLKSHGGQLFIVQGSPISIFQKLKRELNFTK--LCFEQDC------------EALWHKRDKKVKKWCAENNITVKEFVSH 91 (184)
Q Consensus 26 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~--v~~~~~~------------~~~~~~rd~~v~~~l~~~gi~~~~~~~~ 91 (184)
+|++.|+.+.+-.|.+...+..++++.+++. |..|=.+ .+-..+.-..+.+.+++.++.+..+.+.
T Consensus 31 ~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~d~~~~~~l~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 110 (272)
T PRK10530 31 RAREAGYKVIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYQAKKVLEADPLPVQQALQVIEMLDEHQIHGLMYVDD 110 (272)
T ss_pred HHHHCCCEEEEEcCCChHHHHHHHHhcCCCCCEEEcCCcEEEecCCCEEEEecCCCHHHHHHHHHHHHhCCcEEEEEcCC
Confidence 3667799999999999988888888877652 2222111 0112233345566677777766555443
Q ss_pred e
Q psy17626 92 T 92 (184)
Q Consensus 92 ~ 92 (184)
.
T Consensus 111 ~ 111 (272)
T PRK10530 111 A 111 (272)
T ss_pred c
Confidence 3
No 320
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=40.50 E-value=1.2e+02 Score=22.40 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
+.++.|++ |.+.|+.+.+..|.+...+..+..++++.
T Consensus 19 ~~~~al~~-l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 19 ETIEALKE-LQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp HHHHHHHH-HHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred HHHHHHHh-hcccceEEEEEccCcccccccccccccch
Confidence 44455553 66789999999999999899999998876
No 321
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=40.41 E-value=1.7e+02 Score=22.43 Aligned_cols=73 Identities=8% Similarity=-0.018 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC-ChHHH---HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG-SPISI---FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g-~~~~~---l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|..+-+..+.+.+++.|..+.+... ++.+. +..+ ...+++.|+..-. .. .....+.+.+.+.||++..++
T Consensus 12 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~i~~~-~~~~~dgiii~~~---~~-~~~~~~~~~~~~~~iPvV~~~ 86 (289)
T cd01540 12 PWFQTEWKFAKKAAKEKGFTVVKIDVPDGEKVLSAIDNL-GAQGAKGFVICVP---DV-KLGPAIVAKAKAYNMKVVAVD 86 (289)
T ss_pred cHHHHHHHHHHHHHHHcCCEEEEccCCCHHHHHHHHHHH-HHcCCCEEEEccC---ch-hhhHHHHHHHHhCCCeEEEec
Confidence 47778888899999999999888755 33322 3332 3467888887632 11 111233444567899999876
Q ss_pred Cc
Q psy17626 90 SH 91 (184)
Q Consensus 90 ~~ 91 (184)
..
T Consensus 87 ~~ 88 (289)
T cd01540 87 DR 88 (289)
T ss_pred CC
Confidence 43
No 322
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=40.33 E-value=95 Score=22.03 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHHHHcCc
Q psy17626 135 LECLADLDRQLKSHGG-QLFIVQGSPISIFQKLKRELNF 172 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~ 172 (184)
...+.+...+++++|. .++.+..++.....++++++++
T Consensus 50 ~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 50 LPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred HHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 3446667778888898 5888888888889999999887
No 323
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=40.23 E-value=78 Score=24.36 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
+...+.-+++++.|+++.+..|.+...+..+.++.+.+
T Consensus 23 ~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~ 60 (264)
T COG0561 23 PETKEALARLREKGVKVVLATGRPLPDVLSILEELGLD 60 (264)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCC
Confidence 33344444788899999999999999999999998888
No 324
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=39.89 E-value=1.1e+02 Score=20.34 Aligned_cols=65 Identities=11% Similarity=0.003 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
.+.+.+ ++.++++|++..|-.....+ +.......+++-|.. +|.-+-+.+.+++.++..|+++..
T Consensus 16 lla~k~---k~~~~e~gi~~~i~a~~~~e-~~~~~~~~~~DvIll----~PQi~~~~~~i~~~~~~~~ipv~~ 80 (104)
T PRK09590 16 MMAKKT---TEYLKEQGKDIEVDAITATE-GEKAIAAAEYDLYLV----SPQTKMYFKQFEEAGAKVGKPVVQ 80 (104)
T ss_pred HHHHHH---HHHHHHCCCceEEEEecHHH-HHHhhccCCCCEEEE----ChHHHHHHHHHHHHhhhcCCCEEE
Confidence 555555 66677789998887666543 444444445665654 466777778899998888998875
No 325
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=39.88 E-value=1.1e+02 Score=20.72 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHc
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 170 (184)
...|.++.+++++.|..++.+..+..+.+.++++++
T Consensus 42 ~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 42 LCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 556667777776677777777776667777777766
No 326
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=39.87 E-value=1.1e+02 Score=24.10 Aligned_cols=46 Identities=11% Similarity=0.025 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 42 ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 42 ~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.+.+.++.++.+++-|+=. .-||..+.-+...+.|++.||++..|.
T Consensus 55 ~e~l~~~l~e~~i~llIDA--THPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 55 AEGLAAFLREEGIDLLIDA--THPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred HHHHHHHHHHcCCCEEEEC--CChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 4779999999999977522 247888888888899999999988875
No 327
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=39.67 E-value=84 Score=24.76 Aligned_cols=50 Identities=8% Similarity=0.173 Sum_probs=40.7
Q ss_pred chhHHHHHHHHHHHHHHHhCCCeEEEEeCCh--hH---HHHHHHHHcCcCeEEEc
Q psy17626 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSP--IS---IFQKLKRELNFTKLCFE 178 (184)
Q Consensus 129 ~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~--~~---~l~~l~~~~~~~~v~~n 178 (184)
.++.++...+......++.....|.|+-+|. .+ .|+.+|++++|.-+++-
T Consensus 128 kkp~~LvsG~n~VtkaIekkKAkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVk 182 (263)
T PTZ00222 128 KAPLAVVTGLQEVTRAIEKKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVK 182 (263)
T ss_pred CCCCeeccCHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 5778899999999999999888999987654 33 27899999999887653
No 328
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=39.53 E-value=1.5e+02 Score=21.77 Aligned_cols=48 Identities=13% Similarity=0.335 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCe--EEEEECChHHHHHHHHH-HcCcceEEEeecccc
Q psy17626 18 ECLADLDRQLKSHGGQ--LFIVQGSPISIFQKLKR-ELNFTKLCFEQDCEA 65 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~--L~v~~g~~~~~l~~l~~-~~~~~~v~~~~~~~~ 65 (184)
+++..+++.++.+|.. ..++.++....+.++.. ....+-||++-.|..
T Consensus 76 ~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~ 126 (183)
T PF03602_consen 76 KAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAK 126 (183)
T ss_dssp HHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTS
T ss_pred HHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCccc
Confidence 4566777777777754 78999999999998864 457788888875543
No 329
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=39.52 E-value=1.4e+02 Score=25.20 Aligned_cols=66 Identities=14% Similarity=0.071 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHH-HHHHHHHHhCCCeEEE
Q psy17626 21 ADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD-KKVKKWCAENNITVKE 87 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd-~~v~~~l~~~gi~~~~ 87 (184)
.-+...|+++|+....+.++..+.+.+.+++ +-..||.+---.|...--| +.|.+.+.++||++..
T Consensus 116 ~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~-nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliV 182 (426)
T COG2873 116 NLFSHTLKRLGIEVRFVDPDDPENFEAAIDE-NTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIV 182 (426)
T ss_pred HHHHHHHHhcCcEEEEeCCCCHHHHHHHhCc-ccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEE
Confidence 3456678899999999988888888877765 3345666554445555555 7888888999998754
No 330
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=39.50 E-value=1.3e+02 Score=20.87 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHcCcceEEEe
Q psy17626 41 PISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 41 ~~~~l~~l~~~~~~~~v~~~ 60 (184)
..+.|.+++++++++.|+.-
T Consensus 36 ~~~~l~~~i~~~~~~~iVvG 55 (130)
T TIGR00250 36 DWSRIEELLKEWTPDKIVVG 55 (130)
T ss_pred HHHHHHHHHHHcCCCEEEEe
Confidence 36789999999999999987
No 331
>TIGR03674 fen_arch flap structure-specific endonuclease. Endonuclease that cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA
Probab=39.30 E-value=75 Score=26.01 Aligned_cols=41 Identities=5% Similarity=-0.064 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEE
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 177 (184)
.+..+.+-|...|++.+...|++.+.+..|++.-.++.|++
T Consensus 131 ~~~~~k~lL~~~Gip~i~AP~EAeaq~a~L~~~g~vd~v~S 171 (338)
T TIGR03674 131 IVESSKKLLDLMGIPYVQAPSEGEAQAAYMAKKGDVDYVGS 171 (338)
T ss_pred HHHHHHHHHHHcCCeEEECCccHHHHHHHHHHCCCeeEEec
Confidence 56677888889999999999988888888886545656654
No 332
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=39.28 E-value=1.2e+02 Score=23.99 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=41.3
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCeEEEEeCChh--H---HHHHHHHHcCcCeEEEc
Q psy17626 128 YNRFRFLLECLADLDRQLKSHGGQLFIVQGSPI--S---IFQKLKRELNFTKLCFE 178 (184)
Q Consensus 128 ~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~--~---~l~~l~~~~~~~~v~~n 178 (184)
..++..+...+.+....++.....|.|+.+|.. + .++.+|+.++|.-+++.
T Consensus 127 ~kkp~~vk~Gin~VtklIekkKAkLVIIA~DVsP~t~kk~LP~LC~k~~VPY~iv~ 182 (266)
T PTZ00365 127 SKKPFMLKYGLNHVTDLVEYKKAKLVVIAHDVDPIELVCFLPALCRKKEVPYCIIK 182 (266)
T ss_pred CCCchHHHhhhHHHHHHHHhCCccEEEEeCCCCHHHHHHHHHHHHhccCCCEEEEC
Confidence 467788999999999999998889999976542 2 35799999999887654
No 333
>KOG0053|consensus
Probab=39.23 E-value=1.6e+02 Score=24.93 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHH-HHHHHHHHhCCCeEE
Q psy17626 21 ADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD-KKVKKWCAENNITVK 86 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd-~~v~~~l~~~gi~~~ 86 (184)
.=+++-+.+.|+.-..+..+-.+.+.+..++ +...||++....|..+.-| +.+++.+.+.|+.+.
T Consensus 131 ~~l~~~~~~~gie~~~vd~~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vv 196 (409)
T KOG0053|consen 131 RILRKFLPKFGGEGDFVDVDDLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVV 196 (409)
T ss_pred HHHHHHHHHhCceeeeechhhHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEE
Confidence 3455566677888888877777778887777 7888999887778877777 778888888888654
No 334
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=39.23 E-value=87 Score=24.06 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=26.1
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
+.|++.|+++.+..|.+...+..++++.++.
T Consensus 26 ~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 26 ERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred HHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 3466779999999999999999999988764
No 335
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=39.22 E-value=2.2e+02 Score=23.54 Aligned_cols=82 Identities=9% Similarity=0.052 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhcC-CeEEEEECCh------HHHHHHHHHHcCcceEEEe-ecccchhHHHHHHHHHHHHhCCCeE-
Q psy17626 15 FLLECLADLDRQLKSHG-GQLFIVQGSP------ISIFQKLKRELNFTKLCFE-QDCEALWHKRDKKVKKWCAENNITV- 85 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g-~~L~v~~g~~------~~~l~~l~~~~~~~~v~~~-~~~~~~~~~rd~~v~~~l~~~gi~~- 85 (184)
|=..++.+|.+.++++| .+..|+.|.. .+.+...+++.+++..+++ -+..|....-+ .+.+.+++.++.+
T Consensus 13 ~G~g~l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~-~~~~~~~~~~~D~I 91 (382)
T PRK10624 13 FGRGAIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVK-EGVEVFKASGADYL 91 (382)
T ss_pred ECcCHHHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHH-HHHHHHHhcCCCEE
Confidence 33457888888888888 4677766642 3345566666777655553 22233322223 3444555566654
Q ss_pred EEecCceeeccc
Q psy17626 86 KEFVSHTLWDPE 97 (184)
Q Consensus 86 ~~~~~~~L~~p~ 97 (184)
..+.+....|-.
T Consensus 92 IaiGGGS~iD~a 103 (382)
T PRK10624 92 IAIGGGSPQDTC 103 (382)
T ss_pred EEeCChHHHHHH
Confidence 445665554444
No 336
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=39.03 E-value=2.1e+02 Score=24.47 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=48.1
Q ss_pred HHHHhcCCeEEEE----ECChHHHHHHHHHHcCcceEEEeecc-----cchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 25 RQLKSHGGQLFIV----QGSPISIFQKLKRELNFTKLCFEQDC-----EALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 25 ~~L~~~g~~L~v~----~g~~~~~l~~l~~~~~~~~v~~~~~~-----~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
+.++.+|.++.-+ .|-..+.|.+.++.+++..+|++-.. .....+|.+++.+++++.++.+++-+-
T Consensus 194 ~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~ 268 (459)
T COG1167 194 QALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDY 268 (459)
T ss_pred HHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCc
Confidence 3445556665544 46678999999999999999998654 123466677888999999988776543
No 337
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=38.97 E-value=2e+02 Score=23.04 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHH----cCcceEEEeecccchhHHHHHHHHHHHHhCCCe---EEEe
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE----LNFTKLCFEQDCEALWHKRDKKVKKWCAENNIT---VKEF 88 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~----~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~---~~~~ 88 (184)
.+..+.++=+.|++.|+.|.|...++.+....+.+. .++..-|...... ...-.+.+++.+++.|+. +..+
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~--~~pk~~~i~~~~~~l~i~~~~~vfi 109 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSIN--WGPKSESLRKIAKKLNLGTDSFLFI 109 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEEe--cCchHHHHHHHHHHhCCCcCcEEEE
Confidence 366778888888889999999998888877777777 4443222111111 122334566677776763 3434
Q ss_pred cCceeeccccc
Q psy17626 89 VSHTLWDPEVV 99 (184)
Q Consensus 89 ~~~~L~~p~~i 99 (184)
+|+ .++...+
T Consensus 110 dD~-~~d~~~~ 119 (320)
T TIGR01686 110 DDN-PAERANV 119 (320)
T ss_pred CCC-HHHHHHH
Confidence 443 3444444
No 338
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=38.92 E-value=1.7e+02 Score=22.15 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC--hHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGS--PISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~--~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
.|...-+..+.+.+++.|..+.+...+ ....+.+.+...+++.|...-.... +..+ +.+.+.||++..++.
T Consensus 23 ~~~~~~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~-----~~~~-~~~~~~~ipvV~~~~ 95 (275)
T cd06295 23 PFFLSLLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHDQ-----DPLP-ERLAETGLPFVVWGR 95 (275)
T ss_pred chHHHHHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCCC-----hHHH-HHHHhCCCCEEEECC
Confidence 367777778889999999998887543 2344555666678998877432111 1223 344667999988754
No 339
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=38.88 E-value=1.2e+02 Score=23.60 Aligned_cols=56 Identities=7% Similarity=0.252 Sum_probs=37.9
Q ss_pred HHhcC--CeEEEEECChHHHHHHHHHH----cCcceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 27 LKSHG--GQLFIVQGSPISIFQKLKRE----LNFTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 27 L~~~g--~~L~v~~g~~~~~l~~l~~~----~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+++.| .+..++.|++.++|++|... ..++-||.+.+-..|..--+ .+...+...|+
T Consensus 124 ~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~-~~l~ll~~GGv 185 (247)
T PLN02589 124 IQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHK-RLIDLVKVGGV 185 (247)
T ss_pred HHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHH-HHHHhcCCCeE
Confidence 34445 46888999999999999864 47899999987555543333 33345554454
No 340
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=38.87 E-value=84 Score=18.56 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=29.3
Q ss_pred HHHHHHHHHhc--CCeEEEEECCh--HHHHHHHHHHcCcceEEEeec
Q psy17626 20 LADLDRQLKSH--GGQLFIVQGSP--ISIFQKLKRELNFTKLCFEQD 62 (184)
Q Consensus 20 L~~L~~~L~~~--g~~L~v~~g~~--~~~l~~l~~~~~~~~v~~~~~ 62 (184)
+..+.+.|+++ |..|.|+..++ ...++.++++.+...+....+
T Consensus 13 l~~~~~~l~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~~~~ 59 (69)
T cd00291 13 VLKTKKALEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHEVLEVEEE 59 (69)
T ss_pred HHHHHHHHhcCCCCCEEEEEecCCcHHHHHHHHHHHcCCEEEEEEEe
Confidence 34455555554 56677777655 788999999988886655543
No 341
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=38.80 E-value=84 Score=24.19 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEe-CChhHHHHHHHHHcCcCeEEEc
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQ-GSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~-g~~~~~l~~l~~~~~~~~v~~n 178 (184)
.+.|.+|.+.+++.|+..++.+ +.+...+..++++.|+.-++.+
T Consensus 185 ~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld 229 (256)
T PF01297_consen 185 PKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKVVYLD 229 (256)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEEESS
T ss_pred HHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEEEeC
Confidence 4788889999999999888776 4556678888899998887765
No 342
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=38.68 E-value=1.3e+02 Score=21.75 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEE--e----CChhHHHHHHHHHcCcCeEEEc
Q psy17626 135 LECLADLDRQLKSHGGQLFIV--Q----GSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~--~----g~~~~~l~~l~~~~~~~~v~~n 178 (184)
...|.++.++|.+.|..+.++ . -|.+++|.++++.++..-..|.
T Consensus 72 l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~~~~~~~~lt 121 (174)
T PF02630_consen 72 LANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAKKFGPDFIGLT 121 (174)
T ss_dssp HHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHCHTTTCEEEE
T ss_pred HHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHHhcCCCcceeE
Confidence 345666667777655544443 3 4667899999999987766554
No 343
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=38.53 E-value=1.3e+02 Score=25.46 Aligned_cols=65 Identities=17% Similarity=0.050 Sum_probs=39.1
Q ss_pred HHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHH-HHHHHHHHhCCCeEEEe
Q psy17626 23 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD-KKVKKWCAENNITVKEF 88 (184)
Q Consensus 23 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd-~~v~~~l~~~gi~~~~~ 88 (184)
+...++..|+.+..+.....+.+.+.++. +...|+.+.-..|....-| +.+.+++++.|+.+..-
T Consensus 120 ~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~-~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD 185 (431)
T PRK08248 120 FAHTLPKLGITVKFVDPSDPENFEAAITD-KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVD 185 (431)
T ss_pred HHHHHHhCCEEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEe
Confidence 33445667888777765555556665543 5667777643334333332 57777888888766543
No 344
>PTZ00217 flap endonuclease-1; Provisional
Probab=38.52 E-value=70 Score=26.84 Aligned_cols=43 Identities=12% Similarity=0.019 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEE
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 177 (184)
.+.+..+.+-|...|++.++..+++.+.+..|++.--++.|++
T Consensus 137 ~~~~~~~~~lL~~~Gip~i~AP~EAdaq~A~L~~~g~v~~ViS 179 (393)
T PTZ00217 137 KEQNEDAKKLLRLMGIPVIEAPCEAEAQCAELVKKGKVYAVAT 179 (393)
T ss_pred HHHHHHHHHHHHHcCCceEECCcCHHHHHHHHHHCCCeEEEeC
Confidence 4567778888999999999999999999998886544555544
No 345
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=38.50 E-value=1.9e+02 Score=23.54 Aligned_cols=75 Identities=7% Similarity=0.065 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECChHHHH-------HHHHHHcCcceEEEeecccchhHHHHHHHH--HHHHhCCCeE
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIF-------QKLKRELNFTKLCFEQDCEALWHKRDKKVK--KWCAENNITV 85 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l-------~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~--~~l~~~gi~~ 85 (184)
=+.+.+..|.+.+++++-++.|+--+-.+.+ ..++....+..||++..-...+..|+..+. ..+.+.|++|
T Consensus 188 ~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~~~~g~~~~~idgV~~Eslf~~~~~~~~e~dr~~~l~~L~~~~~~G~~V 267 (315)
T TIGR01370 188 EMIAFVCEIAAYARAQNPQFVIIPQNGEELLRDDHGGLAATVSGWAVEELFYYAANRPTEAERQRRLLALYRLWQQGKFV 267 (315)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEecCchhhhhccccchhhhceEEEecceEEcCCCCCCHHHHHHHHHHHHHHHHCCCcE
Confidence 3566666777777888877766532222333 445666778888876422233444443332 2234568887
Q ss_pred EEec
Q psy17626 86 KEFV 89 (184)
Q Consensus 86 ~~~~ 89 (184)
...+
T Consensus 268 l~ID 271 (315)
T TIGR01370 268 LTVD 271 (315)
T ss_pred EEEE
Confidence 6543
No 346
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=38.41 E-value=1.9e+02 Score=22.51 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHhc-----CCeEEEEECChHHHHHHHHHHcCcceEEEee-cccchhHHHHHHHHHHHHhCCCeE
Q psy17626 12 RFRFLLECLADLDRQLKSH-----GGQLFIVQGSPISIFQKLKRELNFTKLCFEQ-DCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 12 r~~fl~~sL~~L~~~L~~~-----g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~-~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
+..=+.+.|.+|++.+++. +..+++ ..+.+..|++.+|++.+.... +-+| ..++-.++.+.+++.+|++
T Consensus 146 N~~~~~~~L~~l~~~~~~~~~~~~~~~~v~----~H~af~Y~~~~ygl~~~~~~~~~~ep-s~~~l~~l~~~ik~~~v~~ 220 (266)
T cd01018 146 NLDALLAELDALDSEIRTILSKLKQRAFMV----YHPAWGYFARDYGLTQIPIEEEGKEP-SPADLKRLIDLAKEKGVRV 220 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCeEEE----ECchhHHHHHHcCCEEEecCCCCCCC-CHHHHHHHHHHHHHcCCCE
Confidence 3444556677776666543 222333 223678999999999775431 2222 3344457777788889987
Q ss_pred EEec
Q psy17626 86 KEFV 89 (184)
Q Consensus 86 ~~~~ 89 (184)
..++
T Consensus 221 if~e 224 (266)
T cd01018 221 VFVQ 224 (266)
T ss_pred EEEc
Confidence 7543
No 347
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=38.19 E-value=1e+02 Score=19.27 Aligned_cols=12 Identities=0% Similarity=0.075 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHc
Q psy17626 41 PISIFQKLKREL 52 (184)
Q Consensus 41 ~~~~l~~l~~~~ 52 (184)
....|..+.++.
T Consensus 55 g~~~L~~l~~~~ 66 (99)
T cd07043 55 GLGVLLGAYKRA 66 (99)
T ss_pred hHHHHHHHHHHH
Confidence 344555555543
No 348
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=38.19 E-value=45 Score=24.93 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCCe-EEEEECChHHHHHHHHHHcCcceEEEeec
Q psy17626 18 ECLADLDRQLKSHGGQ-LFIVQGSPISIFQKLKRELNFTKLCFEQD 62 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~~~v~~~~~ 62 (184)
+.+.-.++.+++.|.+ +.|+.|++.+.|+.+- ..++||..-.
T Consensus 69 ~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~---~~daiFIGGg 111 (187)
T COG2242 69 EALELIERNAARFGVDNLEVVEGDAPEALPDLP---SPDAIFIGGG 111 (187)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC---CCCEEEECCC
Confidence 3566777888888864 9999999999888544 4777777653
No 349
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=38.15 E-value=1.9e+02 Score=22.35 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCeEEEEECC-----hHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 22 DLDRQLKSHGGQLFIVQGS-----PISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v~~g~-----~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
-....-+..|+++...... -.+.|..+.+..+++.|++-.-+..+-+.| ++..|++.|+++..
T Consensus 50 ~~~~~Ae~~gi~l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~GaI~s~yqk~r---ve~lc~~lGl~~~~ 117 (223)
T COG2102 50 LAELQAEAMGIPLVTFDTSGEEEREVEELKEALRRLKVDGIVAGAIASEYQKER---VERLCEELGLKVYA 117 (223)
T ss_pred HHHHHHHhcCCceEEEecCccchhhHHHHHHHHHhCcccEEEEchhhhHHHHHH---HHHHHHHhCCEEee
Confidence 3333445679998776432 346677788889999999887655555554 45556777987653
No 350
>PRK03980 flap endonuclease-1; Provisional
Probab=38.10 E-value=76 Score=25.45 Aligned_cols=42 Identities=10% Similarity=-0.034 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEE
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 177 (184)
+.+..+.+-|...|++.++..+++++.+..|++.--++.|.+
T Consensus 83 ~~~~~~k~lL~~~GIp~i~AP~EAEAq~A~L~~~g~vd~V~S 124 (292)
T PRK03980 83 EIVEDSKKLLDLMGIPYVQAPSEGEAQAAYMAKKGDAWAVGS 124 (292)
T ss_pred HHHHHHHHHHHHCCCCEEecCchHHHHHHHHHHCCCeEEEec
Confidence 355667777888899999999988888888886544555543
No 351
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=38.08 E-value=1.5e+02 Score=24.24 Aligned_cols=63 Identities=8% Similarity=-0.012 Sum_probs=36.2
Q ss_pred HHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHH-HHHHHHHHHhCCCeEEEec
Q psy17626 26 QLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR-DKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 26 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~r-d~~v~~~l~~~gi~~~~~~ 89 (184)
-++..|+.+.....+..+.+.+.++. +...|+.+.-..|...-- -+++.+.+++.|+.+..-+
T Consensus 99 ~~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~ 162 (369)
T cd00614 99 LLPKLGIEVTFVDPDDPEALEAAIKP-ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDN 162 (369)
T ss_pred HHhhcCeEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEEC
Confidence 34456777777766555555555543 455666654443432222 2467777778888766543
No 352
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=38.05 E-value=86 Score=21.49 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=26.7
Q ss_pred HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeE
Q psy17626 45 FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 45 l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
|.+-+.+.+++.|++++.--.+ -.|-..+.+.+.+.|+.|
T Consensus 78 la~ra~~~gi~~vvfDrg~~~y-hGrV~a~a~~are~Gl~f 117 (117)
T PRK05593 78 IAERAKAKGIKQVVFDRGGYKY-HGRVKALADAAREAGLKF 117 (117)
T ss_pred HHHHHHHCCCCEEEEcCCCCcc-cHHHHHHHHHHHHhCCCC
Confidence 5555667799999988753333 446667777777777753
No 353
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=38.02 E-value=1.5e+02 Score=24.71 Aligned_cols=82 Identities=12% Similarity=0.055 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhcC-CeEEEEECCh------HHHHHHHHHHcCcceEEEe-ecccchhHHHHHHHHHHHHhCCCe-E
Q psy17626 15 FLLECLADLDRQLKSHG-GQLFIVQGSP------ISIFQKLKRELNFTKLCFE-QDCEALWHKRDKKVKKWCAENNIT-V 85 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g-~~L~v~~g~~------~~~l~~l~~~~~~~~v~~~-~~~~~~~~~rd~~v~~~l~~~gi~-~ 85 (184)
|=..++.+|.+.++++| .+++|..|.. .+.+...+++.+++.+++. -...|....-+ +..+.+++.++. +
T Consensus 32 fG~g~~~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~-~~~~~~r~~~~D~I 110 (395)
T PRK15454 32 CGPGAVSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVC-AAVAQLRESGCDGV 110 (395)
T ss_pred ECcCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHH-HHHHHHHhcCcCEE
Confidence 33346666666666666 3344443321 2334444455565544442 11122222222 233334444554 4
Q ss_pred EEecCceeeccc
Q psy17626 86 KEFVSHTLWDPE 97 (184)
Q Consensus 86 ~~~~~~~L~~p~ 97 (184)
..+.+...+|-.
T Consensus 111 iavGGGS~iD~A 122 (395)
T PRK15454 111 IAFGGGSVLDAA 122 (395)
T ss_pred EEeCChHHHHHH
Confidence 445555554444
No 354
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=37.99 E-value=91 Score=20.10 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=5.0
Q ss_pred HHHHHHHhCCC
Q psy17626 73 KVKKWCAENNI 83 (184)
Q Consensus 73 ~v~~~l~~~gi 83 (184)
.+++.++..|+
T Consensus 86 ~~~~~l~~~~l 96 (108)
T TIGR00377 86 RVARLLDITGL 96 (108)
T ss_pred HHHHHHHHhCh
Confidence 34444444443
No 355
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=37.98 E-value=1.2e+02 Score=21.95 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=24.6
Q ss_pred CcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 53 NFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 53 ~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
++..|+++..+.+....-.+.+++.++..||+++.+.-
T Consensus 29 ~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 66 (189)
T TIGR02432 29 RLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKV 66 (189)
T ss_pred CEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 45566666555443333446778888889998876653
No 356
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=37.96 E-value=2.3e+02 Score=23.27 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcC-CeEEEEECChH---HHHHHHHHHcCcceEEEeecccch-hHHHHHHHHHHHHhCCCe-EEEecCc
Q psy17626 18 ECLADLDRQLKSHG-GQLFIVQGSPI---SIFQKLKRELNFTKLCFEQDCEAL-WHKRDKKVKKWCAENNIT-VKEFVSH 91 (184)
Q Consensus 18 ~sL~~L~~~L~~~g-~~L~v~~g~~~---~~l~~l~~~~~~~~v~~~~~~~~~-~~~rd~~v~~~l~~~gi~-~~~~~~~ 91 (184)
.++.+|.+.++++| .+..|+.|... +.+.+.+++.++...+++ +.+++ ....-+++.+.+++.++. +..+.+.
T Consensus 9 g~l~~l~~~~~~~g~~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 87 (367)
T cd08182 9 GAIAKLPSLLKGLGGKRVLLVTGPRSAIASGLTDILKPLGTLVVVFD-DVQPNPDLEDLAAGIRLLREFGPDAVLAVGGG 87 (367)
T ss_pred CHHHHHHHHHHhcCCCeEEEEeCchHHHHHHHHHHHHHcCCeEEEEc-CcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCc
Confidence 35677777777777 45666666533 344555555565544443 22222 122223444455555654 3445554
Q ss_pred eeeccc
Q psy17626 92 TLWDPE 97 (184)
Q Consensus 92 ~L~~p~ 97 (184)
...|-.
T Consensus 88 s~~D~a 93 (367)
T cd08182 88 SVLDTA 93 (367)
T ss_pred HHHHHH
Confidence 444433
No 357
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.90 E-value=1.8e+02 Score=22.18 Aligned_cols=73 Identities=11% Similarity=0.088 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.|..+-+..+.+.+++.|..+.+... ++.. .+..+. ..+++.|+.... .....+..+++ +.+.||++..+
T Consensus 12 ~f~~~~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~-~~~vdgiii~~~---~~~~~~~~i~~-~~~~~iPvV~~ 86 (272)
T cd06313 12 TWCAQGKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMA-SQGWDFIAVDPL---GIGTLTEAVQK-AIARGIPVIDM 86 (272)
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHH-HcCCCEEEEcCC---ChHHhHHHHHH-HHHCCCcEEEe
Confidence 48888888999999999999988855 3332 233333 578898888531 11122333433 45679999988
Q ss_pred cCc
Q psy17626 89 VSH 91 (184)
Q Consensus 89 ~~~ 91 (184)
+..
T Consensus 87 ~~~ 89 (272)
T cd06313 87 GTL 89 (272)
T ss_pred CCC
Confidence 654
No 358
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=37.87 E-value=1.7e+02 Score=24.07 Aligned_cols=81 Identities=11% Similarity=0.077 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcC-CeEEEEECCh------HHHHHHHHHHcCcceEEEee-cccchhHHHHHHHHHHHHhCCCe-EEEe
Q psy17626 18 ECLADLDRQLKSHG-GQLFIVQGSP------ISIFQKLKRELNFTKLCFEQ-DCEALWHKRDKKVKKWCAENNIT-VKEF 88 (184)
Q Consensus 18 ~sL~~L~~~L~~~g-~~L~v~~g~~------~~~l~~l~~~~~~~~v~~~~-~~~~~~~~rd~~v~~~l~~~gi~-~~~~ 88 (184)
.++.+|.+.++++| .+.+|+.|.. .+.+.+..++.+++...++. ...|....-+ ++.+.+++.++. +..+
T Consensus 10 g~~~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~-~~~~~~~~~~~d~IIai 88 (370)
T cd08192 10 GAIKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVE-AGLAAYRAGGCDGVIAF 88 (370)
T ss_pred CHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHH-HHHHHHHhcCCCEEEEe
Confidence 46778888888887 4666666532 33344445555666554432 2233333333 334445556666 4557
Q ss_pred cCceeeccccc
Q psy17626 89 VSHTLWDPEVV 99 (184)
Q Consensus 89 ~~~~L~~p~~i 99 (184)
.+....|-.+.
T Consensus 89 GGGSviD~aK~ 99 (370)
T cd08192 89 GGGSALDLAKA 99 (370)
T ss_pred CCchHHHHHHH
Confidence 77777666544
No 359
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=37.85 E-value=1.8e+02 Score=24.35 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=40.0
Q ss_pred HHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHH-HHHHHHHHhCCCeEEE
Q psy17626 23 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD-KKVKKWCAENNITVKE 87 (184)
Q Consensus 23 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd-~~v~~~l~~~gi~~~~ 87 (184)
+...++..|+.+.++..+..+.+.+.++. +...|+++.-..|...--| +.+.+.+++.|+.+..
T Consensus 126 ~~~~~~~~G~~v~~vd~~d~~~l~~ai~~-~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~viv 190 (403)
T PRK07810 126 CNEILPRWGVETVFVDGEDLSQWEEALSV-PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVL 190 (403)
T ss_pred HHHHHHHcCcEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEE
Confidence 34455667888888766555556665543 4566776655545543333 5777778888877654
No 360
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=37.83 E-value=1.1e+02 Score=22.35 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEC-ChHHHHHHHHHHc---CcceEEEeec
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQG-SPISIFQKLKREL---NFTKLCFEQD 62 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~~---~~~~v~~~~~ 62 (184)
+...+..+++-|.++|++.+...| ++.++|..|++.. +...+.++.|
T Consensus 84 l~~q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS~D 134 (169)
T PF02739_consen 84 LIPQLPYIKELLEALGIPVLEVPGYEADDVIATLAKKASEEGFEVIIVSGD 134 (169)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEETTB-HHHHHHHHHHHHHHTTCEEEEE-SS
T ss_pred HHHHHHHHHHHHHHCCCCEecCCCCcHHHHHHHHHhhhccCCCEEEEEcCC
Confidence 556678888888899999888777 7778888887764 4445555554
No 361
>PRK14976 5'-3' exonuclease; Provisional
Probab=37.81 E-value=1.5e+02 Score=23.57 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeC-ChhHHHHHHHHHc---CcCeEEEcccc
Q psy17626 133 FLLECLADLDRQLKSHGGQLFIVQG-SPISIFQKLKREL---NFTKLCFEQDC 181 (184)
Q Consensus 133 fl~~~L~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~~---~~~~v~~n~~~ 181 (184)
-+...+..+.+-|+.+|++.+...| ++.+++..++.+. |...+....|.
T Consensus 87 ~l~~q~~~i~~~l~~~gi~~~~~~g~EADDviatla~~~~~~g~~v~IvS~Dk 139 (281)
T PRK14976 87 SLISQIPLLKKILKLAGIKWEEQPGYEADDLIGSLAKKLSKQNITVLIYSSDK 139 (281)
T ss_pred HHHHHHHHHHHHHHHCCCCEEecCCcCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3556678888888899999998887 8888888887665 44454555443
No 362
>PRK10976 putative hydrolase; Provisional
Probab=37.68 E-value=1e+02 Score=23.67 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=25.1
Q ss_pred HHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 27 LKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 27 L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
|++.|+.+.+..|.+...+..+.+..+.+
T Consensus 31 l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 31 LTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred HHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 56789999999999998888888887765
No 363
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=37.66 E-value=1.3e+02 Score=23.53 Aligned_cols=67 Identities=12% Similarity=0.012 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCeEEEEECChHH--------H----HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPIS--------I----FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~--------~----l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
+..+-+..++.+-.++++.||-.+ . +..|.+..++-.|.=|+|+.. .....+.+++.+++.|+.+..
T Consensus 69 l~~~v~~i~~~~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~pv~~V~GNHD~~~-~~~~~~~~~~~l~~~gi~lL~ 147 (271)
T PRK11340 69 ISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECAPTFACFGNHDRPV-GTEKNHLIGETLKSAGITVLF 147 (271)
T ss_pred HHHHHHHHHhcCCCEEEEccCcCCCCccccHHHHHHHHHHHhhcCCEEEecCCCCccc-CccchHHHHHHHHhcCcEEee
Confidence 333444455567789999887533 1 333333335556777888742 112234567788888887654
No 364
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=37.59 E-value=1.2e+02 Score=23.18 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=20.0
Q ss_pred HHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 144 QLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 144 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
+|++.|+.+.+..|.+...+..+.++.+++
T Consensus 31 ~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 31 RAREAGYKVIIVTGRHHVAIHPFYQALALD 60 (272)
T ss_pred HHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 355567777777777766666666666655
No 365
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=37.56 E-value=3.2e+02 Score=25.85 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
...+.-+.|++.|++..++.||....-..++++.++.
T Consensus 583 ~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~ 619 (941)
T TIGR01517 583 GVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGIL 619 (941)
T ss_pred hHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCC
Confidence 3445556677889999999999999999999999985
No 366
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=37.53 E-value=1.1e+02 Score=24.18 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 43 SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 43 ~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
..|.+++++++. ||+-+.-+++..+..-.|+.+.++.|+.+..+
T Consensus 143 ~~i~~la~~~gL--~fFy~~~C~~C~~~apil~~fa~~ygi~v~~V 186 (256)
T TIGR02739 143 KAIQQLSQSYGL--FFFYRGKSPISQKMAPVIQAFAKEYGISVIPI 186 (256)
T ss_pred HHHHHHHhceeE--EEEECCCCchhHHHHHHHHHHHHHhCCeEEEE
Confidence 456666666555 56666667777777777777777777776554
No 367
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=37.50 E-value=1.3e+02 Score=20.52 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCChh-----HHHHHHHHHcCcCeEEEc
Q psy17626 134 LLECLADLDRQLKSHGGQLFIVQGSPI-----SIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~~g~~~-----~~l~~l~~~~~~~~v~~n 178 (184)
+...++...+.++.-...|.++..|.. ..++.+|++++|.-+|.-
T Consensus 28 i~~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~ 77 (116)
T COG1358 28 LKKGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVG 77 (116)
T ss_pred chhhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeC
Confidence 556677777777775667888865544 467889999999988864
No 368
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=37.49 E-value=1.2e+02 Score=19.83 Aligned_cols=62 Identities=23% Similarity=0.220 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
+.++.+.+.+ ..|+|..|+-.+++...... ++..|....... -++.+.+.+++.|+++....
T Consensus 31 ~~~~~~~~~~--~~lvIt~gdR~di~~~a~~~-~i~~iIltg~~~-----~~~~v~~la~~~~i~vi~t~ 92 (105)
T PF07085_consen 31 LSDFLEYLKP--GDLVITPGDREDIQLAAIEA-GIACIILTGGLE-----PSEEVLELAKELGIPVISTP 92 (105)
T ss_dssp HHHHHHCHHT--TEEEEEETT-HHHHHHHCCT-TECEEEEETT---------HHHHHHHHHHT-EEEE-S
T ss_pred HHHHHhhcCC--CeEEEEeCCcHHHHHHHHHh-CCCEEEEeCCCC-----CCHHHHHHHHHCCCEEEEEC
Confidence 3444445544 67888889887777666553 477787776443 34566667777788877544
No 369
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=37.48 E-value=1.3e+02 Score=22.34 Aligned_cols=30 Identities=7% Similarity=0.185 Sum_probs=25.3
Q ss_pred HHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 26 QLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 26 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
.|++.|+++.+..|.+...+..+.+..+.+
T Consensus 31 ~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 31 KAEKLGIPVILATGNVLCFARAAAKLIGTS 60 (230)
T ss_pred HHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 356679999999999998888888887765
No 370
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=37.47 E-value=1.4e+02 Score=20.80 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCcceEEEeecccc--------hhHHH---HHHHHHHHHhCCCeEEEecC
Q psy17626 43 SIFQKLKRELNFTKLCFEQDCEA--------LWHKR---DKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 43 ~~l~~l~~~~~~~~v~~~~~~~~--------~~~~r---d~~v~~~l~~~gi~~~~~~~ 90 (184)
+.+..+|++.+++-++....+.+ ....| .++|+..+++.|+.+.-+.+
T Consensus 39 ~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~s~ 97 (130)
T PF04914_consen 39 QLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADFSD 97 (130)
T ss_dssp HHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-TT
T ss_pred HHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEeccc
Confidence 56788888999998888876533 11222 36788889999987765443
No 371
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=37.45 E-value=2.2e+02 Score=22.86 Aligned_cols=158 Identities=13% Similarity=0.167 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhcCCe--EEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHH--HHHHHHHHhCCCeEEEecCc
Q psy17626 16 LLECLADLDRQLKSHGGQ--LFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD--KKVKKWCAENNITVKEFVSH 91 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~--L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd--~~v~~~l~~~gi~~~~~~~~ 91 (184)
+...+..+.++.. .++| |++=+|...+.+.+ +=+.+.+.|.++-.-.|++.... .++.+.+...|+.++.--++
T Consensus 63 ~~~~~~~~A~~~~-~~vPV~lHLDHg~~~e~i~~-ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~ 140 (286)
T PRK08610 63 VVKMVEGLMHDLN-ITIPVAIHLDHGSSFEKCKE-AIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGT 140 (286)
T ss_pred HHHHHHHHHHHcC-CCCCEEEECCCCCCHHHHHH-HHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 4444444444332 1134 45557877776655 34469999999988888765543 66777788889988764444
Q ss_pred eeeccccccccc-CCCCchhHHHHHHHhh-hc-----c-ccccCcchhHHHHHHHHHHHHHHHhCCCeEEEEeC---Chh
Q psy17626 92 TLWDPEVVIQTN-GNVPPLTYKMYLHTVS-CI-----G-TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQG---SPI 160 (184)
Q Consensus 92 ~L~~p~~i~~~~-~~~~~~v~~~F~~~~~-~~-----~-~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g---~~~ 160 (184)
.=-.-+...... .-+-|.--..|.+... .. + .|..-...+..-++.|+++++.+ ++|| |++| -+.
T Consensus 141 vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~---~vPL-VLHGgSG~~~ 216 (286)
T PRK08610 141 VGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST---GLPL-VLHGGTGIPT 216 (286)
T ss_pred cCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH---CCCE-EEeCCCCCCH
Confidence 311111111100 0012222333543221 11 1 12222223344467788887765 8997 5764 445
Q ss_pred HHHHHHHHHcCcCeEEEccc
Q psy17626 161 SIFQKLKRELNFTKLCFEQD 180 (184)
Q Consensus 161 ~~l~~l~~~~~~~~v~~n~~ 180 (184)
+.+.+. -++||..|=.+.+
T Consensus 217 e~~~~a-i~~GI~KiNi~T~ 235 (286)
T PRK08610 217 KDIQKA-IPFGTAKINVNTE 235 (286)
T ss_pred HHHHHH-HHCCCeEEEeccH
Confidence 555554 5789998855544
No 372
>KOG3128|consensus
Probab=37.34 E-value=98 Score=24.55 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCc
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 172 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 172 (184)
.+..+++-..|+.++||+.+++..-.+++..+.++-.+
T Consensus 140 Reg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~ 177 (298)
T KOG3128|consen 140 REGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLV 177 (298)
T ss_pred HHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhc
Confidence 34556666789999999999997777777776665544
No 373
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=37.34 E-value=86 Score=23.82 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=24.8
Q ss_pred HHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 144 QLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 144 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
.|++.|+++.+..|.+...+..+.++.++.
T Consensus 26 ~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 26 ELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 566779999999998888788888888864
No 374
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=37.12 E-value=1.7e+02 Score=21.46 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCeEEEEE-CChHHHHHHHHHHcCcc----------eEEEeecccchhHHHHHHHHHHHHhCCCe
Q psy17626 19 CLADLDRQLKSHGGQLFIVQ-GSPISIFQKLKRELNFT----------KLCFEQDCEALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~-g~~~~~l~~l~~~~~~~----------~v~~~~~~~~~~~~rd~~v~~~l~~~gi~ 84 (184)
.+.+.=+.|+..|+.|-+-. -+.++.-.++.+..++. .++-..++.|. .-....++..++.||+
T Consensus 49 dv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g--sK~~Hf~~i~~~tgI~ 123 (169)
T PF12689_consen 49 DVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG--SKTTHFRRIHRKTGIP 123 (169)
T ss_dssp THHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS---HHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecC--chHHHHHHHHHhcCCC
Confidence 33344445666899998876 35567778888888888 77766666554 3334556665666763
No 375
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=37.12 E-value=2.5e+02 Score=23.57 Aligned_cols=78 Identities=9% Similarity=0.128 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcC-CeEEEEECCh------HHHHHHHHHHcCcceEEEee-cccchhHHHHHHHHHHHHhCCCe-EEEe
Q psy17626 18 ECLADLDRQLKSHG-GQLFIVQGSP------ISIFQKLKRELNFTKLCFEQ-DCEALWHKRDKKVKKWCAENNIT-VKEF 88 (184)
Q Consensus 18 ~sL~~L~~~L~~~g-~~L~v~~g~~------~~~l~~l~~~~~~~~v~~~~-~~~~~~~~rd~~v~~~l~~~gi~-~~~~ 88 (184)
.++..|.+.++++| .+.+|+.|.. .+.+.+.+++.+++..++.. ...|.....+ ++.+.+++.++. +..+
T Consensus 9 g~~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~-~~~~~~~~~~~D~IIai 87 (414)
T cd08190 9 GVTAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFK-DAIAFAKKGQFDAFVAV 87 (414)
T ss_pred CHHHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHH-HHHHHHHhcCCCEEEEe
Confidence 36777777888887 4566666542 24445555566777665542 2234333333 344445555654 4555
Q ss_pred cCceeecc
Q psy17626 89 VSHTLWDP 96 (184)
Q Consensus 89 ~~~~L~~p 96 (184)
.+....|-
T Consensus 88 GGGSviD~ 95 (414)
T cd08190 88 GGGSVIDT 95 (414)
T ss_pred CCccHHHH
Confidence 55555444
No 376
>PLN02940 riboflavin kinase
Probab=37.10 E-value=1.3e+02 Score=24.97 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChHHHHHHHHH-HcC----cceEEEeecc
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR-ELN----FTKLCFEQDC 63 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~-~~~----~~~v~~~~~~ 63 (184)
..+.++=+.|++.|+++.|..+.+...+...++ ..+ ++.|+...++
T Consensus 96 pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v 146 (382)
T PLN02940 96 PGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEV 146 (382)
T ss_pred cCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhc
Confidence 445667788889999999999988777766665 334 4677776654
No 377
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=36.97 E-value=1.2e+02 Score=22.63 Aligned_cols=30 Identities=7% Similarity=0.185 Sum_probs=21.3
Q ss_pred HHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 144 QLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 144 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
.|++.|+.+.+..|.+...+..+.+..+..
T Consensus 31 ~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 31 KAEKLGIPVILATGNVLCFARAAAKLIGTS 60 (230)
T ss_pred HHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 355668888888887777677777777665
No 378
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=36.94 E-value=97 Score=20.63 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCC--eEEEEECChHHHHHHHHHHcCcceEEEee
Q psy17626 18 ECLADLDRQLKSHGG--QLFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 61 (184)
..+.++.+.+++.+. ..+++-|.+...-++++++.+++.++...
T Consensus 65 ~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~~~~ 110 (119)
T cd02067 65 TLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYFGPA 110 (119)
T ss_pred HHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEEECCH
Confidence 444555555666554 33455566666666778888887776643
No 379
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=36.87 E-value=86 Score=23.99 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcC
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 53 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~ 53 (184)
+...+.++-+++.+.|+.+.+..|.+...+..+.++++
T Consensus 22 ~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~ 59 (249)
T TIGR01485 22 ALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKP 59 (249)
T ss_pred HHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCC
Confidence 44667777778888999999999999999999977654
No 380
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=36.80 E-value=1.8e+02 Score=21.79 Aligned_cols=72 Identities=7% Similarity=-0.074 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC---hH--HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGS---PI--SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~---~~--~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.|..+-+..+.+.++++|..+.+...+ +. ..+.+.+...+++.|.+.-.-.+.. .+.+ +.+.||++..+
T Consensus 12 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~-----~~~~-~~~~~ipvv~~ 85 (264)
T cd01574 12 HGPSSTLAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAPLDDAD-----AALA-AAPADVPVVFV 85 (264)
T ss_pred ccHHHHHHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCCCCChH-----HHHH-HHhcCCCEEEE
Confidence 366777788888899999998887643 22 1222334456789888754322222 1222 24578999888
Q ss_pred cCc
Q psy17626 89 VSH 91 (184)
Q Consensus 89 ~~~ 91 (184)
+..
T Consensus 86 ~~~ 88 (264)
T cd01574 86 DGS 88 (264)
T ss_pred ecc
Confidence 654
No 381
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=36.78 E-value=1.2e+02 Score=21.49 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCC-eEEEEECChHHHHHHHHHHcCc
Q psy17626 17 LECLADLDRQLKSHGG-QLFIVQGSPISIFQKLKRELNF 54 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~ 54 (184)
...+.+..++++++|. .++.+..++.....+++++.++
T Consensus 50 ~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 50 LPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred HHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 5567788888888998 5888999999999999999887
No 382
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=36.41 E-value=1.4e+02 Score=24.08 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 22 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
..-+.|++.|+++++..|.+...+..+.++.+++
T Consensus 25 ~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 25 QALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 3345566789999999999999999999988775
No 383
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=36.38 E-value=1.1e+02 Score=24.66 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=26.4
Q ss_pred HHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe
Q psy17626 141 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174 (184)
Q Consensus 141 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 174 (184)
.-+.|++.|+++.+..|.+...+..+.++.+++.
T Consensus 26 aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~ 59 (302)
T PRK12702 26 ALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEH 59 (302)
T ss_pred HHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCC
Confidence 3445667799999999988888888888888763
No 384
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=36.31 E-value=99 Score=22.94 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=26.0
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
+.|++.|+++.+..|.+...+..+.+.++.+
T Consensus 28 ~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 28 RKAEKKGIPVSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred HHHHHCCCEEEEEcCCcchhHHHHHHHhCCC
Confidence 3456679999999999998888888888876
No 385
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=36.24 E-value=1.5e+02 Score=20.75 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHcCcceEEEe
Q psy17626 41 PISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 41 ~~~~l~~l~~~~~~~~v~~~ 60 (184)
..+.|.+++++++++.|+.-
T Consensus 42 ~~~~l~~~i~~~~i~~iVvG 61 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVG 61 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEe
Confidence 36789999999999999887
No 386
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=36.24 E-value=1.8e+02 Score=21.82 Aligned_cols=58 Identities=7% Similarity=0.056 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCC-eEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHh
Q psy17626 18 ECLADLDRQLKSHGG-QLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAE 80 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~ 80 (184)
+++..+++.++..|+ +..++.|+..+.++.. ....+.|++|-.|. ......+.+.+..
T Consensus 87 ~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~--~~~fDlV~~DPPy~---~g~~~~~l~~l~~ 145 (199)
T PRK10909 87 AVAQQLIKNLATLKAGNARVVNTNALSFLAQP--GTPHNVVFVDPPFR---KGLLEETINLLED 145 (199)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc--CCCceEEEECCCCC---CChHHHHHHHHHH
Confidence 345556667766665 4778889887666432 22478899987543 2333344444443
No 387
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=36.19 E-value=3e+02 Score=24.09 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCCeEEEE----EC------ChHHHHHHHHHHcCcceEEEee-----cccch-hHHHHHHHHHHHHhC
Q psy17626 18 ECLADLDRQLKSHGGQLFIV----QG------SPISIFQKLKRELNFTKLCFEQ-----DCEAL-WHKRDKKVKKWCAEN 81 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~----~g------~~~~~l~~l~~~~~~~~v~~~~-----~~~~~-~~~rd~~v~~~l~~~ 81 (184)
+.|.++-+..++.|..|+++ .| +-...|.+++++.++..||.|. |..|. ...--+++.+.+++.
T Consensus 92 ~~l~~~~~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~~~~l~~~~~~~ 171 (501)
T TIGR01307 92 PALLGAIDRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIELAAERGIEKVVLHAFTDGRDTAPKSAESYLEQLQAFLKEI 171 (501)
T ss_pred HHHHHHHHHHHhcCCceEEEEeccCCCCcchHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCchhHHHHHHHHHHHHHHh
Confidence 44566666667778999887 12 3456677888889998888874 44554 333345677777664
Q ss_pred C-CeEEEecCce
Q psy17626 82 N-ITVKEFVSHT 92 (184)
Q Consensus 82 g-i~~~~~~~~~ 92 (184)
| .++-+..++.
T Consensus 172 ~~~~iasv~GRy 183 (501)
T TIGR01307 172 GNGRIATISGRY 183 (501)
T ss_pred CCEEEEEEeCcc
Confidence 5 3555555553
No 388
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=36.19 E-value=2e+02 Score=22.17 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=25.4
Q ss_pred HHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 27 LKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 27 L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
|++.|+.+.+..|.+...+..++++.+++
T Consensus 31 l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (272)
T PRK15126 31 LRERDITLTFATGRHVLEMQHILGALSLD 59 (272)
T ss_pred HHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 56689999999999999989999887765
No 389
>PRK06769 hypothetical protein; Validated
Probab=36.13 E-value=1.3e+02 Score=21.71 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChHH--------HHHHHHHHcCcceEEEeeccc----chhHHHHHHHHHHHHhCCC
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGSPIS--------IFQKLKRELNFTKLCFEQDCE----ALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~~~~--------~l~~l~~~~~~~~v~~~~~~~----~~~~~rd~~v~~~l~~~gi 83 (184)
++..+.++=+.|++.|.++.|..+.+.. .+....+..+++.++...... ...+-..+-+...+++.|+
T Consensus 29 ~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~ 108 (173)
T PRK06769 29 LFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHGL 108 (173)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 4566677777888889999999876531 233335567777776543221 1222233455556665554
No 390
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=36.06 E-value=1.6e+02 Score=21.45 Aligned_cols=22 Identities=9% Similarity=0.222 Sum_probs=11.6
Q ss_pred CChHHHHHHHHHHcCcc-eEEEee
Q psy17626 39 GSPISIFQKLKRELNFT-KLCFEQ 61 (184)
Q Consensus 39 g~~~~~l~~l~~~~~~~-~v~~~~ 61 (184)
-+..+.|..|.+. ++. .|+.|.
T Consensus 108 ~g~~~~l~~L~~~-g~~~~i~Sn~ 130 (203)
T TIGR02252 108 PDAIKLLKDLRER-GLILGVISNF 130 (203)
T ss_pred cCHHHHHHHHHHC-CCEEEEEeCC
Confidence 3456666666543 443 455543
No 391
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=36.00 E-value=1e+02 Score=24.08 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEe-----------C--Ch----------hHHHHHHHHHcCcCeEEEccccc
Q psy17626 133 FLLECLADLDRQLKSHGGQLFIVQ-----------G--SP----------ISIFQKLKRELNFTKLCFEQDCE 182 (184)
Q Consensus 133 fl~~~L~~L~~~L~~~g~~L~v~~-----------g--~~----------~~~l~~l~~~~~~~~v~~n~~~~ 182 (184)
-+.+.|..+...+.+.++.|+|+. | +. ...|..++.++++.-|++|+-++
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~ 189 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTT 189 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECS
T ss_pred HHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeee
Confidence 345666677777777788888874 1 11 22466789999999999997653
No 392
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=35.98 E-value=1e+02 Score=21.02 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=24.8
Q ss_pred HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeE
Q psy17626 45 FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 45 l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
|.+-+.+-+++.|++++. +.-.-.|-..+.+.+.+.|+.|
T Consensus 75 la~ra~~~gi~~vvfDrg-g~~YhGrv~A~a~~aRe~Gl~F 114 (114)
T TIGR00060 75 VAERLKEKGIKDVVFDRG-GYKYHGRVAALAEAAREAGLNF 114 (114)
T ss_pred HHHHHHHCCCCEEEEeCC-CCcchHHHHHHHHHHHHhCCCC
Confidence 555556678888888764 2223445566666677777653
No 393
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=35.96 E-value=1.9e+02 Score=21.80 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC--hH---HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGS--PI---SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~--~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.|..+-+..+.+.++++|..+.+..++ +. +.+..+. ..+++.|++.-.... . ..++ .+.+.|+++..+
T Consensus 12 ~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~-~~~vdgii~~~~~~~-~----~~~~-~~~~~~ipvV~~ 84 (268)
T cd06270 12 PFFGPLLSGVESVARKAGKHLIITAGHHSAEKEREAIEFLL-ERRCDALILHSKALS-D----DELI-ELAAQVPPLVLI 84 (268)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHH-HcCCCEEEEecCCCC-H----HHHH-HHhhCCCCEEEE
Confidence 477788888899999999998887543 22 2344433 468898887532111 1 1133 345679998887
Q ss_pred cCc
Q psy17626 89 VSH 91 (184)
Q Consensus 89 ~~~ 91 (184)
+..
T Consensus 85 ~~~ 87 (268)
T cd06270 85 NRH 87 (268)
T ss_pred ecc
Confidence 643
No 394
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=35.89 E-value=1.7e+02 Score=21.35 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=37.5
Q ss_pred eEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 33 QLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 33 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|+|-+ -|-..-.++.-+.+|..|++..+|..+. -.......+++.||++..|.
T Consensus 99 tlYvt~-~PC~~Cak~Ii~aGIk~Vvy~~~Y~~~~--~~~~s~~l~~~agv~~~~~~ 152 (164)
T COG2131 99 TLYVTH-FPCSNCAKLIIQAGIKEVVYAEPYPTET--VAPYSQELLEEAGVKVRQFP 152 (164)
T ss_pred EEEEEe-cccHHHHHHHHHhCceEEEeecCCCcch--hhHHHHHHHHhCCceEEecc
Confidence 355544 3445555555556799999999987665 33455667889999999876
No 395
>PRK10976 putative hydrolase; Provisional
Probab=35.81 E-value=1.3e+02 Score=23.01 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=18.4
Q ss_pred HHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 145 LKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 145 L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
|++.|+.+.+..|.+...+..+.++.+.+
T Consensus 31 l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 31 LTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred HHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 45557777777776666666666666654
No 396
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=35.72 E-value=1.4e+02 Score=25.19 Aligned_cols=47 Identities=11% Similarity=0.064 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 42 ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 42 ~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
.+.+.+++++++++.|+..-... ..++-..+.+.|++.|+++....+
T Consensus 180 ~~dl~~~i~~~~vd~ViIA~p~~--~~~~~~~ll~~~~~~gv~V~vvP~ 226 (451)
T TIGR03023 180 LDDLEELIREGEVDEVYIALPLA--AEDRILELLDALEDLTVDVRLVPD 226 (451)
T ss_pred HHHHHHHHHhcCCCEEEEeeCcc--cHHHHHHHHHHHHhcCCEEEEeCc
Confidence 35688999999999999986432 333445667778888988876654
No 397
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=35.71 E-value=1.4e+02 Score=20.10 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=5.3
Q ss_pred CCCeEEEEeCCh
Q psy17626 148 HGGQLFIVQGSP 159 (184)
Q Consensus 148 ~g~~L~v~~g~~ 159 (184)
.|+++.++.+.+
T Consensus 40 ~g~~l~i~Sn~~ 51 (132)
T TIGR01662 40 AGYKVVIVTNQS 51 (132)
T ss_pred CCCEEEEEECCc
Confidence 344444444433
No 398
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=35.69 E-value=2e+02 Score=21.94 Aligned_cols=70 Identities=11% Similarity=0.249 Sum_probs=43.5
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcCcc--eEEEeeccc-----------chhHHHHHHHHHHHHhCCCeEEEecCc
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFT--KLCFEQDCE-----------ALWHKRDKKVKKWCAENNITVKEFVSH 91 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~--~v~~~~~~~-----------~~~~~rd~~v~~~l~~~gi~~~~~~~~ 91 (184)
++|++.|+.+.+..|.+...+..+.++.+.+ .|..|-.+- +.....-..+.+.+++.++.+..+.+.
T Consensus 26 ~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~~I~~NGa~i~~~~~~~i~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~ 105 (256)
T TIGR00099 26 AKLREKGIKVVLATGRPYKEVKNILKELGLDTPFITANGAAVIDDQGEILYKKPLDLDLVEEILNFLKKHGLDVILYGDD 105 (256)
T ss_pred HHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCCCEEEcCCcEEECCCCCEEeecCCCHHHHHHHHHHHHHcCcEEEEEeCC
Confidence 3456679999999999999999999887766 222221110 111233345566677778776655444
Q ss_pred eee
Q psy17626 92 TLW 94 (184)
Q Consensus 92 ~L~ 94 (184)
..+
T Consensus 106 ~~~ 108 (256)
T TIGR00099 106 SIY 108 (256)
T ss_pred eEE
Confidence 333
No 399
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=35.61 E-value=2e+02 Score=21.85 Aligned_cols=160 Identities=8% Similarity=-0.129 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEE-C--ChHH--HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQ-G--SPIS--IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~-g--~~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
..|+.+-+..+.+.++++|..+.+.. . ++.. .+...+...+++.|+.... . ...-++.+++. .+ |+++..
T Consensus 10 ~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~-~--~~~~~~~l~~~-~~-~ipvV~ 84 (271)
T cd06314 10 SPFWKIAEAGVKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPI-D--PKAVIPALNKA-AA-GIKLIT 84 (271)
T ss_pred cHHHHHHHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecC-C--hhHhHHHHHHH-hc-CCCEEE
Confidence 35788888999999999999988874 2 3322 2222345568998888631 1 11123344443 45 899888
Q ss_pred ecCceee-c-ccccccccCCCCchh-HHHHHHHhhhcc-ccc----cCcchhHHHHHHHHHHHHHHHhCCCeEEEE-eCC
Q psy17626 88 FVSHTLW-D-PEVVIQTNGNVPPLT-YKMYLHTVSCIG-TMH----IGYNRFRFLLECLADLDRQLKSHGGQLFIV-QGS 158 (184)
Q Consensus 88 ~~~~~L~-~-p~~i~~~~~~~~~~v-~~~F~~~~~~~~-~~~----~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~-~g~ 158 (184)
++...=- + ...+..+ .+.. +..........+ ..+ .+......-.+.++...+.+++.|+.+... .++
T Consensus 85 ~~~~~~~~~~~~~V~~D----~~~~g~~a~~~l~~~~~~g~~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~ 160 (271)
T cd06314 85 TDSDAPDSGRYVYIGTD----NYAAGRTAGEIMKKALPGGGKVAIFVGSLGADNAKERIQGIKDAIKDSKIEIVDTRGDE 160 (271)
T ss_pred ecCCCCccceeEEEccC----hHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCCHHHHHHHHHHHHhcCCcEEEEEecCc
Confidence 7642100 0 0112211 1111 111111111110 001 122111233455666777888888875432 222
Q ss_pred -----hhHHHHHHHHHc-CcCeEEEcccc
Q psy17626 159 -----PISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 159 -----~~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
..+.+.++.+++ .++.|++..++
T Consensus 161 ~~~~~~~~~~~~~l~~~~~~~~i~~~~d~ 189 (271)
T cd06314 161 EDFAKAKSNAEDALNAHPDLKCMFGLYAY 189 (271)
T ss_pred cCHHHHHHHHHHHHHhCCCccEEEecCCc
Confidence 234666777665 47888876554
No 400
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=35.61 E-value=87 Score=23.00 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe
Q psy17626 138 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174 (184)
Q Consensus 138 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 174 (184)
..++=+.|++.|+++.++.+.....+....+..++..
T Consensus 80 ~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~ 116 (205)
T TIGR01454 80 VPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP 116 (205)
T ss_pred HHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh
Confidence 3344455666688888888777666666677777744
No 401
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=35.56 E-value=1.6e+02 Score=20.90 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
|+.++.+--++|..+ +..+|-.|+.-..+.++++-.++..=+.. ...++.+-..+-.-|++.+-.+..+
T Consensus 31 lf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~rv~---a~a~~e~K~~ii~eLkk~~~k~vmV 99 (152)
T COG4087 31 LFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVERVF---AGADPEMKAKIIRELKKRYEKVVMV 99 (152)
T ss_pred EcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCceeeee---cccCHHHHHHHHHHhcCCCcEEEEe
Confidence 455666666777777 89999999999999999998876532221 1223334444444455444444443
No 402
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=35.49 E-value=2.5e+02 Score=23.12 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCeEEEEECC-----hHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGS-----PISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~-----~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
++..|...|.+.|-+..+.-|+ +.+.|..+.++.++.-|--...-+|.....| .+++. ++.|+.+...+
T Consensus 155 TIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafD-Ai~~A-kar~~DvvliD 228 (340)
T COG0552 155 TIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFD-AIQAA-KARGIDVVLID 228 (340)
T ss_pred HHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHH-HHHHH-HHcCCCEEEEe
Confidence 4555666666666666666555 2344666666666654443333334444444 33332 34455555443
No 403
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=35.49 E-value=1.2e+02 Score=25.68 Aligned_cols=48 Identities=6% Similarity=-0.007 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCcceEEEeeccc--chhHHHHHHHHHHHH-hCCCeEEEecC
Q psy17626 42 ISIFQKLKRELNFTKLCFEQDCE--ALWHKRDKKVKKWCA-ENNITVKEFVS 90 (184)
Q Consensus 42 ~~~l~~l~~~~~~~~v~~~~~~~--~~~~~rd~~v~~~l~-~~gi~~~~~~~ 90 (184)
.+.|.+++++++++.|+..---. ++... +..+++.+. +.||++..+++
T Consensus 339 ~~~l~~l~ke~~aDGVI~~~~~~C~~~~~e-~~~~~~~l~e~~GIP~L~iE~ 389 (413)
T TIGR02260 339 VDLLEKYINEYEADGLLINSIKSCNSFSAG-QLLMMREIEKRTGKPAAFIET 389 (413)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCCCcchhh-hHHHHHHHHHHcCCCEEEEEc
Confidence 34566677777777666553322 22221 223333333 36777665543
No 404
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=35.46 E-value=1.4e+02 Score=20.09 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHc-CcceEEE
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKLCF 59 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~-~~~~v~~ 59 (184)
...|..+.++|++.|..++.+..+..+.+.+++++. +..--+.
T Consensus 42 ~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l 85 (140)
T cd02971 42 LCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLL 85 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEE
Confidence 677788888887778888888888888888888877 5443333
No 405
>PRK03980 flap endonuclease-1; Provisional
Probab=35.39 E-value=79 Score=25.33 Aligned_cols=44 Identities=11% Similarity=-0.009 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecc
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~ 63 (184)
-+.++++-|+.+|++.++--|+++..+..|++.--++.| .+.|+
T Consensus 84 ~~~~~k~lL~~~GIp~i~AP~EAEAq~A~L~~~g~vd~V-~S~D~ 127 (292)
T PRK03980 84 IVEDSKKLLDLMGIPYVQAPSEGEAQAAYMAKKGDAWAV-GSQDY 127 (292)
T ss_pred HHHHHHHHHHHCCCCEEecCchHHHHHHHHHHCCCeEEE-ecCCc
Confidence 455677778888999998888877778888865444455 44454
No 406
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=35.36 E-value=1.9e+02 Score=21.69 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChH---HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPI---SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.|..+-+..+.+.+++.|..+.+... ++. +.+..+.+ .+++.|.+...... + .+.+.+.+.|+++..+
T Consensus 12 ~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~~~~-----~-~~~~~l~~~~iPvv~~ 84 (268)
T cd06273 12 AIFARVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLE-RGVDGLALIGLDHS-----P-ALLDLLARRGVPYVAT 84 (268)
T ss_pred chHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHh-cCCCEEEEeCCCCC-----H-HHHHHHHhCCCCEEEE
Confidence 46677778889999999999888754 233 33445444 47888876422111 1 2234566789998877
Q ss_pred cC
Q psy17626 89 VS 90 (184)
Q Consensus 89 ~~ 90 (184)
+.
T Consensus 85 ~~ 86 (268)
T cd06273 85 WN 86 (268)
T ss_pred cC
Confidence 54
No 407
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=35.35 E-value=1.5e+02 Score=20.33 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=27.0
Q ss_pred HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 45 FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 45 l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
..+.+++-.+.-|+..+|.+|.+... .+...|++.||++..+.+
T Consensus 35 ~~Kai~~g~a~LVviA~Dv~P~~~~~--~l~~lc~~~~vpyv~V~s 78 (116)
T COG1358 35 VTKAIERGKAKLVVIAEDVSPEELVK--HLPALCEEKNVPYVYVGS 78 (116)
T ss_pred HHHHHHcCCCcEEEEecCCCHHHHHH--HHHHHHHhcCCCEEEeCC
Confidence 33444556677777777777655444 455666777777765443
No 408
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=35.32 E-value=1.4e+02 Score=20.07 Aligned_cols=46 Identities=22% Similarity=0.214 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhCCCe---EEEEeCCh-hHHHHHHHHHcCcCeEEEcc
Q psy17626 134 LLECLADLDRQLKSHGGQ---LFIVQGSP-ISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~---L~v~~g~~-~~~l~~l~~~~~~~~v~~n~ 179 (184)
..+.+..+.+.+.+.|+. ..+..|++ .+.+...+.+.+++.|+.-.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~ 121 (154)
T COG0589 72 AEELLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGS 121 (154)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECC
Confidence 456677777778887865 45667988 68999999999999887643
No 409
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=35.30 E-value=1.3e+02 Score=19.78 Aligned_cols=79 Identities=18% Similarity=0.107 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCeEEEEECCh-HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhC--CCeEEEecCceeec
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSP-ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAEN--NITVKEFVSHTLWD 95 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~-~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~--gi~~~~~~~~~L~~ 95 (184)
++.-+..-|++.|....++..+. .+.+.+.+++.+.+.|.++--+.+....- .++.+..++. ++.+..-..+.-..
T Consensus 16 Gl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~-~~l~~~~k~~~p~~~iv~GG~~~t~~ 94 (121)
T PF02310_consen 16 GLLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEA-KRLARAIKERNPNIPIVVGGPHATAD 94 (121)
T ss_dssp HHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHH-HHHHHHHHTTCTTSEEEEEESSSGHH
T ss_pred HHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHH-HHHHHHHHhcCCCCEEEEECCchhcC
Confidence 56678888888899988886654 47788888888999999987555544333 3444445543 55555444443333
Q ss_pred ccc
Q psy17626 96 PEV 98 (184)
Q Consensus 96 p~~ 98 (184)
|+.
T Consensus 95 ~~~ 97 (121)
T PF02310_consen 95 PEE 97 (121)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 410
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=35.29 E-value=2e+02 Score=21.86 Aligned_cols=154 Identities=9% Similarity=0.037 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECC----hHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeE
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQGS----PIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g~----~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
-.|..+-+..+.+.+++.|..+.+..++ ..+ .+..+. ..+++.|.... .... ..+ .+.. +.+.|+++
T Consensus 11 ~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~-~~~vdgiI~~~-~~~~--~~~-~~~~-~~~~giPv 84 (268)
T cd06306 11 DAYWLSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCA-AWGADAILLGA-VSPD--GLN-EILQ-QVAASIPV 84 (268)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH-HcCCCEEEEcC-CChh--hHH-HHHH-HHHCCCCE
Confidence 3477788888999999999999888532 222 333333 46899888753 1111 122 2333 45689999
Q ss_pred EEecCceeeccc---ccccccCCCCchh---HHHHHHHhh-------hccccccCcchhHHHHHHHHHHHHHHHhCCCeE
Q psy17626 86 KEFVSHTLWDPE---VVIQTNGNVPPLT---YKMYLHTVS-------CIGTMHIGYNRFRFLLECLADLDRQLKSHGGQL 152 (184)
Q Consensus 86 ~~~~~~~L~~p~---~i~~~~~~~~~~v---~~~F~~~~~-------~~~~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L 152 (184)
..++...- ++. .+.. +.+.. -..+..... ..... .++.......+..+-+.+.+++.|++.
T Consensus 85 V~~~~~~~-~~~~~~~V~~----d~~~~g~~~~~~l~~~g~~~~~~~~i~~l-~g~~~~~~~~~R~~g~~~~~~~~~~~~ 158 (268)
T cd06306 85 IALVNDIN-SPDITAKVGV----SWYEMGYQAGEYLAQRHPKGSKPAKVAWF-PGPKGAGWVKAVEKGFRDALAGSAIEI 158 (268)
T ss_pred EEeccCCC-CcceeEEecC----ChHHHHHHHHHHHHHHhhcCCCCceEEEE-eCCCCCchHHHHHHHHHHHHhhcCcEE
Confidence 87754221 111 1211 11111 111111111 00000 122222233455666777888888764
Q ss_pred EEE-eC--C---hhHHHHHHHHHc-CcCeEEEc
Q psy17626 153 FIV-QG--S---PISIFQKLKREL-NFTKLCFE 178 (184)
Q Consensus 153 ~v~-~g--~---~~~~l~~l~~~~-~~~~v~~n 178 (184)
.-. .+ + ..+.+.++.++. +++.|+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 191 (268)
T cd06306 159 SAIKYGDTGKEVQRKLVEEALEAHPDIDYIVGS 191 (268)
T ss_pred eeeccCCccHHHHHHHHHHHHHhCCCcCEEeec
Confidence 322 21 2 235666777665 68888876
No 411
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=35.21 E-value=1.1e+02 Score=22.59 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=19.8
Q ss_pred HHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 144 QLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 144 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
.|++.|+.+.+..|.+...+..+.+.++++
T Consensus 29 ~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 29 KAEKKGIPVSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred HHHHCCCEEEEEcCCcchhHHHHHHHhCCC
Confidence 345557777777777666666666666665
No 412
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=35.15 E-value=2e+02 Score=21.77 Aligned_cols=78 Identities=9% Similarity=0.066 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEEC--ChH---HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 12 RFRFLLECLADLDRQLKSHGGQLFIVQG--SPI---SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 12 r~~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
+..|+.+-+..+.+.++++|..+.+... ++. +.+..+. ..+++.+...... ......+....+.+.+.|+++.
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgii~~~~~-~~~~~~~~~~~~~~~~~~ipvV 87 (273)
T cd01541 10 SDYIFPSIIRGIESVLSEKGYSLLLASTNNDPERERKCLENML-SQGIDGLIIEPTK-SALPNPNIDLYLKLEKLGIPYV 87 (273)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH-HcCCCEEEEeccc-cccccccHHHHHHHHHCCCCEE
Confidence 4457788888899999999999988753 332 3444544 4689999875321 1111112122233466789988
Q ss_pred EecCc
Q psy17626 87 EFVSH 91 (184)
Q Consensus 87 ~~~~~ 91 (184)
.++..
T Consensus 88 ~~~~~ 92 (273)
T cd01541 88 FINAS 92 (273)
T ss_pred EEecC
Confidence 87643
No 413
>PF00867 XPG_I: XPG I-region; InterPro: IPR006086 This entry represents endonucleases that cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA. The endonuclease binds 2 magnesium ions per subunit. which probably participate in the reaction catalyzed by the enzyme. May bind an additional third magnesium ion after substrate binding.; GO: 0004518 nuclease activity, 0006281 DNA repair; PDB: 1UL1_Z 3Q8K_A 3Q8M_A 3Q8L_A 2IZO_A 1A77_A 1A76_A 3QEA_Z 3QE9_Y 3QEB_Z ....
Probab=35.10 E-value=62 Score=20.89 Aligned_cols=32 Identities=13% Similarity=-0.010 Sum_probs=24.1
Q ss_pred hcCCeEEEEECChHHHHHHHHHHcCcceEEEe
Q psy17626 29 SHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 29 ~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 60 (184)
.+|++.++--+++...+..|.+.--++.|+.+
T Consensus 2 ~~gv~~i~AP~EAeAq~A~L~~~g~vd~V~t~ 33 (94)
T PF00867_consen 2 LMGVPYIVAPYEAEAQCAYLERNGLVDAVITE 33 (94)
T ss_dssp HHT-EEEE-SS-HHHHHHHHHHTTSSSEEE-S
T ss_pred CCCCeEEEcCchHHHHHHHHHHhcceeEEEec
Confidence 46899999999999999999988788888876
No 414
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=34.98 E-value=1.4e+02 Score=23.10 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=20.4
Q ss_pred HHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 145 LKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 145 L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
|++.|+.+.+..|.+...+..++++.+++
T Consensus 31 l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (272)
T PRK15126 31 LRERDITLTFATGRHVLEMQHILGALSLD 59 (272)
T ss_pred HHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 45567777777777776667777777665
No 415
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=34.92 E-value=1e+02 Score=20.88 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=27.8
Q ss_pred HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeE
Q psy17626 44 IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 44 ~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
.|.+-+.+-+|+.|++++.--. .-.|-..+.+.+.+.|+.|
T Consensus 69 lla~ra~~~gi~~vvfDrgg~~-yhGrV~a~a~~are~GL~f 109 (109)
T CHL00139 69 KLAKKSLKKGITKVVFDRGGKL-YHGRIKALAEAAREAGLQF 109 (109)
T ss_pred HHHHHHHHCCCCEEEEcCCCCc-cchHHHHHHHHHHHhCCCC
Confidence 3556666789999999874222 3356667777777778753
No 416
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.92 E-value=2.1e+02 Score=22.03 Aligned_cols=64 Identities=9% Similarity=0.141 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCceeecccccccccCCCCchhHH
Q psy17626 43 SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYK 112 (184)
Q Consensus 43 ~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~~~~~~~v~~ 112 (184)
..+-+-.+..++..|..- +||-.+..+...+.++++|+++..+-+--+-+--++-.. +|+.+|.
T Consensus 107 ~Avv~aL~al~a~ri~vl---TPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~---~P~~~y~ 170 (238)
T COG3473 107 TAVVEALNALGAQRISVL---TPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQ---EPWAVYR 170 (238)
T ss_pred HHHHHHHHhhCcceEEEe---ccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhccc---ChHHHHH
Confidence 334444566778888654 477677777788999999999999888877776666332 3445544
No 417
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=34.79 E-value=1.9e+02 Score=23.97 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=36.8
Q ss_pred EEEEC-ChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 35 FIVQG-SPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 35 ~v~~g-~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|+.| +..+.|.+.+++++.++++.--+-.......-+.+.+.|++.|+.+..|.
T Consensus 10 ~i~~G~g~l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~ 65 (382)
T PRK10624 10 TAYFGRGAIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYD 65 (382)
T ss_pred eEEECcCHHHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeC
Confidence 34456 67788999999888777766544222222234578888998999877653
No 418
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=34.70 E-value=2.6e+02 Score=22.90 Aligned_cols=64 Identities=9% Similarity=0.113 Sum_probs=37.5
Q ss_pred HHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchh-HHHHHHHHHHHHhCCCeEEEe
Q psy17626 24 DRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALW-HKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 24 ~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~-~~rd~~v~~~l~~~gi~~~~~ 88 (184)
...++..|+.+........+.+.+.++. +...|+.+.-..|.. ...-+++.+.+++.|+.+..-
T Consensus 108 ~~~~~~~G~~v~~vd~~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD 172 (366)
T PRK08247 108 EEHWKKWNVRFVYVNTASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVD 172 (366)
T ss_pred HHHhhccCceEEEECCCCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEE
Confidence 4445566777766654444556555543 456677755444542 233367777888888766543
No 419
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=34.69 E-value=2.5e+02 Score=22.82 Aligned_cols=41 Identities=7% Similarity=0.150 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCeEEEEECChH-----HHHHHHHHHcCcceEEE
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPI-----SIFQKLKRELNFTKLCF 59 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~-----~~l~~l~~~~~~~~v~~ 59 (184)
++.+|.+.+++.|.+.+|+.|... +.+...+++.+++...+
T Consensus 10 ~~~~l~~~~~~~~~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~ 55 (345)
T cd08171 10 AYKKIPEVCEKYGKKVVVIGGKTALAAAKDKIKAALEQSGIEITDF 55 (345)
T ss_pred HHHHHHHHHHhcCCEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 566666666666777666666421 23444445556654433
No 420
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=34.67 E-value=2.5e+02 Score=24.10 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 54 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 54 (184)
..+.-+.|++.|+.+.++.|+.......++++.++
T Consensus 352 ~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi 386 (499)
T TIGR01494 352 AKETISELREAGIRVIMLTGDNVLTAKAIAKELGI 386 (499)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc
Confidence 34455666778999999999999999999999986
No 421
>PTZ00217 flap endonuclease-1; Provisional
Probab=34.67 E-value=81 Score=26.46 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeeccc
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~ 64 (184)
+-+..+++-|+.+|++.++--|++.+.+..|++.--++.|+ +.|.+
T Consensus 138 ~~~~~~~~lL~~~Gip~i~AP~EAdaq~A~L~~~g~v~~Vi-S~D~D 183 (393)
T PTZ00217 138 EQNEDAKKLLRLMGIPVIEAPCEAEAQCAELVKKGKVYAVA-TEDMD 183 (393)
T ss_pred HHHHHHHHHHHHcCCceEECCcCHHHHHHHHHHCCCeEEEe-CCCcC
Confidence 44567777888889998888888888888887654444443 34443
No 422
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=34.59 E-value=1.8e+02 Score=24.06 Aligned_cols=87 Identities=9% Similarity=0.053 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcCC-eEEEEECChH------HHHHHHHHHcCcceEEEee-cccchhHHHHHHHHHHHHhCC
Q psy17626 11 NRFRFLLECLADLDRQLKSHGG-QLFIVQGSPI------SIFQKLKRELNFTKLCFEQ-DCEALWHKRDKKVKKWCAENN 82 (184)
Q Consensus 11 ~r~~fl~~sL~~L~~~L~~~g~-~L~v~~g~~~------~~l~~l~~~~~~~~v~~~~-~~~~~~~~rd~~v~~~l~~~g 82 (184)
.|..|=..++.+|.+.++++|. +..|+.|... +.+...+++.+++...++. +..|....-+ ++.+.+++.+
T Consensus 7 ~~i~~G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~-~~~~~~~~~~ 85 (377)
T cd08176 7 PTNLFGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVK-DGLAVFKKEG 85 (377)
T ss_pred CeEEECcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHH-HHHHHHHhcC
Confidence 3444445678888888988884 6777765432 3355555666776555543 2234333333 4445566667
Q ss_pred Ce-EEEecCceeecccc
Q psy17626 83 IT-VKEFVSHTLWDPEV 98 (184)
Q Consensus 83 i~-~~~~~~~~L~~p~~ 98 (184)
+. +..+.+...+|-.+
T Consensus 86 ~D~IIavGGGS~iD~aK 102 (377)
T cd08176 86 CDFIISIGGGSPHDCAK 102 (377)
T ss_pred CCEEEEeCCcHHHHHHH
Confidence 76 45577777655443
No 423
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=34.52 E-value=99 Score=22.03 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=7.8
Q ss_pred ChHHHHHHHHHHcCcce
Q psy17626 40 SPISIFQKLKRELNFTK 56 (184)
Q Consensus 40 ~~~~~l~~l~~~~~~~~ 56 (184)
...+.|..|.+ .++.-
T Consensus 92 g~~~~l~~l~~-~g~~i 107 (185)
T TIGR02009 92 GIENFLKRLKK-KGIAV 107 (185)
T ss_pred CHHHHHHHHHH-cCCeE
Confidence 34555555543 35543
No 424
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=34.51 E-value=2.4e+02 Score=22.56 Aligned_cols=141 Identities=15% Similarity=0.172 Sum_probs=77.7
Q ss_pred EEEEECChHHHHHHHHHHcCcceEEEeecccchhHHH--HHHHHHHHHhCCCeEEEecCceeecccccccccC-CCCchh
Q psy17626 34 LFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR--DKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNG-NVPPLT 110 (184)
Q Consensus 34 L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~r--d~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~~-~~~~~v 110 (184)
|++=+|...+.+.+.++ .+.+.|.++-.-.|++... -+++.+.+.+.|+.++.--++.=-.-+....... -+-|.-
T Consensus 82 lHLDHg~~~e~i~~ai~-~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~pee 160 (285)
T PRK07709 82 IHLDHGSSFEKCKEAID-AGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAE 160 (285)
T ss_pred EECCCCCCHHHHHHHHH-cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHH
Confidence 55557877666665544 5999999998888886544 3677778888899887644433111111111000 011222
Q ss_pred HHHHHHHhh-hc-----c-ccccCcchhHHHHHHHHHHHHHHHhCCCeEEEEeC---ChhHHHHHHHHHcCcCeEEEccc
Q psy17626 111 YKMYLHTVS-CI-----G-TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQG---SPISIFQKLKRELNFTKLCFEQD 180 (184)
Q Consensus 111 ~~~F~~~~~-~~-----~-~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g---~~~~~l~~l~~~~~~~~v~~n~~ 180 (184)
-..|.+... .. + .|..-...+..=++-|+++++.+ ++|| |++| -+.+.+.+. -++||..|=.+.+
T Consensus 161 A~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~---~iPL-VLHGgSG~~~e~~~~a-i~~Gi~KiNi~T~ 235 (285)
T PRK07709 161 CKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT---GVPL-VLHGGTGIPTADIEKA-ISLGTSKINVNTE 235 (285)
T ss_pred HHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHH---CCCE-EEeCCCCCCHHHHHHH-HHcCCeEEEeChH
Confidence 233443221 11 1 12221112233347788887766 8998 6764 445656554 5789998855544
No 425
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=34.47 E-value=1.9e+02 Score=22.27 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCeEEEEeC-ChhHHHHHHHHH---cCcCeEEEcccc
Q psy17626 131 FRFLLECLADLDRQLKSHGGQLFIVQG-SPISIFQKLKRE---LNFTKLCFEQDC 181 (184)
Q Consensus 131 ~~fl~~~L~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~---~~~~~v~~n~~~ 181 (184)
+.-+...+..+.+-|+..|++.....| ++.+++..++.+ .|...+....|.
T Consensus 80 p~~l~~q~~~~~~~l~~~gi~~i~~~~~EADD~ia~la~~~~~~g~~~~I~S~Dk 134 (240)
T cd00008 80 PEELREQIPLIKELLEALGIPVLEIEGYEADDVIGTLAKKAEAEGYKVVIVSGDK 134 (240)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEecCCcCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 444677888899999999999888776 778888877754 344444455443
No 426
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=34.37 E-value=2e+02 Score=21.62 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc
Q psy17626 22 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 54 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 54 (184)
++-+.|++.|..+.|..+.+...+..+.+..++
T Consensus 102 ~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l 134 (229)
T PRK13226 102 GMLQRLECAGCVWGIVTNKPEYLARLILPQLGW 134 (229)
T ss_pred HHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCc
Confidence 344455555555555555554444444444443
No 427
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=34.35 E-value=1e+02 Score=22.86 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeE
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL 175 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v 175 (184)
.+.++-+.|++.|+++.++.+.....+..+++.++....
T Consensus 97 g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~ 135 (226)
T PRK13222 97 GVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADY 135 (226)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccC
Confidence 344455566667999999988887777778887776543
No 428
>TIGR03674 fen_arch flap structure-specific endonuclease. Endonuclease that cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA
Probab=34.33 E-value=91 Score=25.51 Aligned_cols=40 Identities=5% Similarity=-0.056 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEE
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 59 (184)
+..+++-|+.+|++.++.-|++...+..|++.-.++.|+.
T Consensus 132 ~~~~k~lL~~~Gip~i~AP~EAeaq~a~L~~~g~vd~v~S 171 (338)
T TIGR03674 132 VESSKKLLDLMGIPYVQAPSEGEAQAAYMAKKGDVDYVGS 171 (338)
T ss_pred HHHHHHHHHHcCCeEEECCccHHHHHHHHHHCCCeeEEec
Confidence 5667777888899998888888888888887655555544
No 429
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=34.23 E-value=1.4e+02 Score=19.66 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCeEEE--E-----------EC-ChHHHHHHHHHHcCcceEEEeecccch
Q psy17626 17 LECLADLDRQLKSHGGQLFI--V-----------QG-SPISIFQKLKRELNFTKLCFEQDCEAL 66 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v--~-----------~g-~~~~~l~~l~~~~~~~~v~~~~~~~~~ 66 (184)
-++|.+|..=.+..|....- . -| .-.+.|..++++.+++.|+++.+.+|.
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~ 70 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPS 70 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHH
Confidence 46777777777777865431 1 12 235778899999999999999988764
No 430
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=34.23 E-value=1.5e+02 Score=25.40 Aligned_cols=48 Identities=10% Similarity=-0.036 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCce
Q psy17626 43 SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHT 92 (184)
Q Consensus 43 ~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~ 92 (184)
+.+.+++++++++.|+..-... ..++-+++-+.|++.++++....+-.
T Consensus 193 ~dL~~~v~~~~IdeViIAip~~--~~~~l~ell~~~~~~~v~V~ivP~l~ 240 (463)
T PRK10124 193 QQLVEDAKAGKIHNVYIAMSMC--DGARVKKLVRQLADTTCSVLLIPDVF 240 (463)
T ss_pred HHHHHHHHhCCCCEEEEeCCCc--chHHHHHHHHHHHHcCCeEEEecchh
Confidence 6688899999999999986432 33444566677888899887776543
No 431
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=33.98 E-value=1.9e+02 Score=23.63 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCeEEEEECChH------HHHHHHHHHcCcceEEEe
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPI------SIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~------~~l~~l~~~~~~~~v~~~ 60 (184)
++..|.+.|+++| +..|+.|... +.+...+++.++....++
T Consensus 10 ~l~~l~~~l~~~g-r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~ 56 (366)
T PF00465_consen 10 ALEELGEELKRLG-RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFD 56 (366)
T ss_dssp GGGGHHHHHHCTT-EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHhcC-CEEEEECchHHhCccHHHHHHHHhhCceEEEEEe
Confidence 3455666666666 5555544322 223333344555554444
No 432
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=33.95 E-value=1.3e+02 Score=23.34 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=27.1
Q ss_pred HHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 23 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 23 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
.=+.|++.|+++.+..|.+...+..++++.+.+
T Consensus 29 ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 29 ALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred HHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 334566789999999999999999999988765
No 433
>PF13466 STAS_2: STAS domain
Probab=33.84 E-value=1.1e+02 Score=18.53 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcC
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 53 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~ 53 (184)
+.|..+.+.+++.|.++.+.. +...+.++++..+
T Consensus 45 ~lL~~~~~~~~~~g~~~~l~~--~~~~~~~ll~~~g 78 (80)
T PF13466_consen 45 QLLLAAARRARARGRQLRLTG--PSPALRRLLELLG 78 (80)
T ss_pred HHHHHHHHHHHHCCCeEEEEc--CCHHHHHHHHHhC
Confidence 344444555555555555542 3333444444433
No 434
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=33.81 E-value=2.2e+02 Score=23.44 Aligned_cols=55 Identities=13% Similarity=0.041 Sum_probs=36.3
Q ss_pred EEEEC-ChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 35 FIVQG-SPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 35 ~v~~g-~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|+.| +..+.|.+.+++++..+++.--+-.......-+.+.+.|++.|+.+..|+
T Consensus 6 ~i~~G~g~l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~ 61 (374)
T cd08189 6 KLFVGSGSLAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYD 61 (374)
T ss_pred eEEECcCHHHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeC
Confidence 45566 66788999999988776665544222221123568888888899877664
No 435
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=33.76 E-value=2.5e+02 Score=22.50 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECC--hH---HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQGS--PI---SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g~--~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
-.|..+.+..+++.++++|..+.+..++ +. +.+..+. ..+++.|.+... . ...-+..+ +.+.+.|+++..
T Consensus 37 ~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~-~~~vDGiIi~~~-~--~~~~~~~l-~~~~~~~iPvV~ 111 (330)
T PRK10355 37 LERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMI-NRGVDVLVIIPY-N--GQVLSNVI-KEAKQEGIKVLA 111 (330)
T ss_pred chHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHH-HcCCCEEEEeCC-C--hhhHHHHH-HHHHHCCCeEEE
Confidence 4588899999999999999999888653 32 2344433 458999988631 1 11112233 345677899988
Q ss_pred ecC
Q psy17626 88 FVS 90 (184)
Q Consensus 88 ~~~ 90 (184)
++.
T Consensus 112 id~ 114 (330)
T PRK10355 112 YDR 114 (330)
T ss_pred ECC
Confidence 754
No 436
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=33.72 E-value=60 Score=24.96 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 174 (184)
.+.++=+.|++.|+++.|..+.+...+....+..++..
T Consensus 112 gv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~ 149 (248)
T PLN02770 112 GLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD 149 (248)
T ss_pred cHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh
Confidence 34455556777799999999988888888888888653
No 437
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=33.72 E-value=2.5e+02 Score=22.48 Aligned_cols=157 Identities=11% Similarity=0.173 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHhcCCe--EEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHH--HHHHHHHHhCCCeEEEecC
Q psy17626 15 FLLECLADLDRQLKSHGGQ--LFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD--KKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~--L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd--~~v~~~l~~~gi~~~~~~~ 90 (184)
.+...+..+.++ ..+| |++=+|...+.+.+-++ .|++.|.++-.-.|++.... +++.+.+...||.++.--+
T Consensus 61 ~~~~~~~~~A~~---~~VPV~lHLDHg~~~e~i~~Ai~-~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG 136 (284)
T PRK09195 61 YLLAIVSAAAKQ---YHHPLALHLDHHEKFDDIAQKVR-SGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELG 136 (284)
T ss_pred HHHHHHHHHHHH---CCCCEEEECCCCCCHHHHHHHHH-cCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 445555555554 2455 44457877676666554 59999999988888765543 6677778888988876444
Q ss_pred ceeecccccccccCC---CCchhHHHHHHHhh-hc-----c-ccccCcchhHHHHHHHHHHHHHHHhCCCeEEEEe---C
Q psy17626 91 HTLWDPEVVIQTNGN---VPPLTYKMYLHTVS-CI-----G-TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ---G 157 (184)
Q Consensus 91 ~~L~~p~~i~~~~~~---~~~~v~~~F~~~~~-~~-----~-~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~---g 157 (184)
+.=-.-+.+...... +-|.--..|.+... .+ + .|..-...+..=++-|+++++.+ ++|| |++ |
T Consensus 137 ~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~---~vPL-VLHGgSG 212 (284)
T PRK09195 137 RLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV---NIPL-VLHGASG 212 (284)
T ss_pred cccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHh---CCCe-EEecCCC
Confidence 331111111111000 12233344554321 11 1 13222223344467788888876 8997 566 4
Q ss_pred ChhHHHHHHHHHcCcCeEEEccc
Q psy17626 158 SPISIFQKLKRELNFTKLCFEQD 180 (184)
Q Consensus 158 ~~~~~l~~l~~~~~~~~v~~n~~ 180 (184)
-+.+.+.+. -+.||..|=.+.+
T Consensus 213 ~~~e~~~~a-i~~Gi~KiNi~T~ 234 (284)
T PRK09195 213 LPTKDIQQT-IKLGICKVNVATE 234 (284)
T ss_pred CCHHHHHHH-HHcCCeEEEeCcH
Confidence 455655554 5789998865544
No 438
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=33.63 E-value=1.9e+02 Score=22.75 Aligned_cols=66 Identities=12% Similarity=0.144 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
+.|-..+.+.|++.|....++..+. +.+..+.+..+++ ++++.-.+.+. +|..+...|+..|+++.
T Consensus 18 l~s~~~i~~al~~~g~~~~~i~~~~-~~~~~~~~~~~~D-~v~~~~~g~~g--e~~~~~~~le~~gip~~ 83 (299)
T PRK14571 18 LRSGERVKKALEKLGYEVTVFDVDE-DFLKKVDQLKSFD-VVFNVLHGTFG--EDGTLQAILDFLGIRYT 83 (299)
T ss_pred HHHHHHHHHHHHHcCCeEEEEccCc-hHHHHhhhccCCC-EEEEeCCCCCC--CccHHHHHHHHcCCCcc
Confidence 3677788888899999877775432 2333333323455 55665544332 34567778888888765
No 439
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=33.60 E-value=1.9e+02 Score=21.07 Aligned_cols=159 Identities=12% Similarity=0.081 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHh--cCCeEEEEEC--C---hHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 14 RFLLECLADLDRQLKS--HGGQLFIVQG--S---PISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~--~g~~L~v~~g--~---~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
.|..+.+..++..+++ .|..+.+... + ..+.+..++.+ +++.|+..-... .. ..+.+.+.+.|+++.
T Consensus 13 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~~~-~~----~~~~~~~~~~~ip~v 86 (269)
T cd01391 13 PFGAQLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQ-GVDGIIGPPSSS-SA----LAVVELAAAAGIPVV 86 (269)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHc-CCCEEEecCCCH-HH----HHHHHHHHHcCCcEE
Confidence 3556666677777777 7888877754 2 23445565554 788887653221 11 114556677899988
Q ss_pred EecCceeec--ccccccccCCCCchhHHHHHHHhhh--ccccc--cCcchhHHHHHHHHHHHHHHHhCCCeEEEEe---C
Q psy17626 87 EFVSHTLWD--PEVVIQTNGNVPPLTYKMYLHTVSC--IGTMH--IGYNRFRFLLECLADLDRQLKSHGGQLFIVQ---G 157 (184)
Q Consensus 87 ~~~~~~L~~--p~~i~~~~~~~~~~v~~~F~~~~~~--~~~~~--~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~---g 157 (184)
.+....-.. ...+..- +.+.+...........+ +.... .+... .+.....+.+++.+++.|..+.... .
T Consensus 87 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (269)
T cd01391 87 SLDATAPDLTGYPYVFRV-GPDNEQAGEAAAEYLAEKGWKRVALIYGDDG-AYGRERLEGFKAALKKAGIEVVAIEYGDL 164 (269)
T ss_pred EecCCCCccCCCceEEEE-cCCcHHHHHHHHHHHHHhCCceEEEEecCCc-chhhHHHHHHHHHHHhcCcEEEeccccCC
Confidence 775532210 0011110 00111111111111111 11111 01111 3445556777788888776544321 1
Q ss_pred C---hhHHHHHHHHHc-CcCeEEEccc
Q psy17626 158 S---PISIFQKLKREL-NFTKLCFEQD 180 (184)
Q Consensus 158 ~---~~~~l~~l~~~~-~~~~v~~n~~ 180 (184)
+ ..+.+.+..++. +++.|++..+
T Consensus 165 ~~~~~~~~~~~~l~~~~~~~~i~~~~~ 191 (269)
T cd01391 165 DTEKGFQALLQLLKAAPKPDAIFACND 191 (269)
T ss_pred CccccHHHHHHHHhcCCCCCEEEEcCc
Confidence 1 224444555555 7888887654
No 440
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=33.46 E-value=97 Score=23.50 Aligned_cols=39 Identities=5% Similarity=0.124 Sum_probs=28.0
Q ss_pred HHHHHHHcCcceEEEeecccch-hHHHHHHHHHHHHhCCCeE
Q psy17626 45 FQKLKRELNFTKLCFEQDCEAL-WHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 45 l~~l~~~~~~~~v~~~~~~~~~-~~~rd~~v~~~l~~~gi~~ 85 (184)
|.+-+.+-+|+.|+|++. .+ .--|-+++++.+++.|+.+
T Consensus 172 IAerAl~kGI~kVvFDRg--Gy~YHGRVkALAdaARe~GLkF 211 (211)
T PTZ00032 172 IGRKALSKGISKVRFDRA--HYKYAGKVEALAEGARAVGLQF 211 (211)
T ss_pred HHHHHHHCCCCEEEEeCC--CCeehhHHHHHHHHHHHcCCCC
Confidence 556666789999999874 34 4456678888888888753
No 441
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=33.46 E-value=89 Score=22.92 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=24.6
Q ss_pred HHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe
Q psy17626 140 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174 (184)
Q Consensus 140 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 174 (184)
++=+.|++.|+++.|..+.....+..+.+..++..
T Consensus 92 ~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~ 126 (213)
T TIGR01449 92 ATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK 126 (213)
T ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh
Confidence 33345566688888888877777777777777643
No 442
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=33.41 E-value=1.9e+02 Score=23.85 Aligned_cols=87 Identities=11% Similarity=0.067 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcC-CeEEEEECChH------HHHHHHHHHcCcceEEEeecccch-hHHHHHHHHHHHHhCC
Q psy17626 11 NRFRFLLECLADLDRQLKSHG-GQLFIVQGSPI------SIFQKLKRELNFTKLCFEQDCEAL-WHKRDKKVKKWCAENN 82 (184)
Q Consensus 11 ~r~~fl~~sL~~L~~~L~~~g-~~L~v~~g~~~------~~l~~l~~~~~~~~v~~~~~~~~~-~~~rd~~v~~~l~~~g 82 (184)
.|..|=..++.++.+.++++| .+..|+.|... +.+...+++.++...+++ +.+++ ....-++..+.+++.+
T Consensus 8 ~~i~fG~g~l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~-~v~~~p~~~~v~~~~~~~~~~~ 86 (379)
T TIGR02638 8 ETSYFGAGAIEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFD-EVKPNPTITVVKAGVAAFKASG 86 (379)
T ss_pred CeEEECcCHHHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEEC-CCCCCcCHHHHHHHHHHHHhcC
Confidence 344455567888989999888 46777766432 345555666677655554 33322 2222234555566677
Q ss_pred Ce-EEEecCceeecccc
Q psy17626 83 IT-VKEFVSHTLWDPEV 98 (184)
Q Consensus 83 i~-~~~~~~~~L~~p~~ 98 (184)
+. +..+.+....|-.+
T Consensus 87 ~D~IiaiGGGSviD~aK 103 (379)
T TIGR02638 87 ADYLIAIGGGSPIDTAK 103 (379)
T ss_pred CCEEEEeCChHHHHHHH
Confidence 76 45577777776663
No 443
>PF08799 PRP4: pre-mRNA processing factor 4 (PRP4) like; InterPro: IPR014906 This small protein is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. ; PDB: 1MZW_B 2DK4_A.
Probab=33.33 E-value=35 Score=17.37 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=15.7
Q ss_pred HHHHHhCCCeEEEEeCChhHHHHHHH
Q psy17626 142 DRQLKSHGGQLFIVQGSPISIFQKLK 167 (184)
Q Consensus 142 ~~~L~~~g~~L~v~~g~~~~~l~~l~ 167 (184)
.+.|+++|.|..++-.+..+...+|.
T Consensus 2 ~~~LR~lgePi~lFGE~~~~R~~RLr 27 (30)
T PF08799_consen 2 RRRLRELGEPITLFGETDADRRERLR 27 (30)
T ss_dssp HHHHHHCT--SCETT--HHHHHHHHH
T ss_pred hHHHHhcCCChhhhCCChHHHHHHHH
Confidence 46789999998877556666666553
No 444
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=33.33 E-value=1.5e+02 Score=19.90 Aligned_cols=83 Identities=8% Similarity=0.030 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc-----ceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF-----TKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~-----~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
...+.++|..+.++.. ....++|+.....+.-.+++++... ..++.+..-......+...++.. .+=-+..
T Consensus 9 ~~~l~~~l~sl~~q~~-~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~---~~~~i~~ 84 (180)
T cd06423 9 EAVIERTIESLLALDY-PKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHA---KGDIVVV 84 (180)
T ss_pred HHHHHHHHHHHHhCCC-CceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhc---CCCEEEE
Confidence 3678888888876543 3567877765444433444444332 22333333333344554444432 2222333
Q ss_pred ecCceeeccccc
Q psy17626 88 FVSHTLWDPEVV 99 (184)
Q Consensus 88 ~~~~~L~~p~~i 99 (184)
.++...++|+.+
T Consensus 85 ~D~D~~~~~~~l 96 (180)
T cd06423 85 LDADTILEPDAL 96 (180)
T ss_pred ECCCCCcChHHH
Confidence 344445555443
No 445
>KOG4498|consensus
Probab=33.13 E-value=42 Score=25.13 Aligned_cols=57 Identities=21% Similarity=0.145 Sum_probs=36.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhcCCeEEEEE-CChHHHHHHHH-HHcCcceEEEeeccc
Q psy17626 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ-GSPISIFQKLK-RELNFTKLCFEQDCE 64 (184)
Q Consensus 7 ~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~-g~~~~~l~~l~-~~~~~~~v~~~~~~~ 64 (184)
+.+-.-.++..+.|.++..=|.++|+.|+..- |+. ..+..++ +.+-+..||...+-+
T Consensus 60 rpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~-~~~~~f~~q~~f~gevylD~~~~ 118 (197)
T KOG4498|consen 60 RPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSH-VQFEDFWDQTYFSGEVYLDPHRG 118 (197)
T ss_pred cCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccce-eecchhhcccCcceeEEEcCccc
Confidence 33444456778889999888889999987763 333 3333444 445566788776544
No 446
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=33.13 E-value=1.2e+02 Score=23.81 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=33.1
Q ss_pred HHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEccc
Q psy17626 140 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180 (184)
Q Consensus 140 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~ 180 (184)
++-.+....|+|+++..+.|.+.=-++++++|+|=|-+-++
T Consensus 212 emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~ 252 (263)
T PRK00724 212 EMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARG 252 (263)
T ss_pred HHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecC
Confidence 34455556699999999999887788999999999877654
No 447
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=33.10 E-value=1.8e+02 Score=24.68 Aligned_cols=63 Identities=17% Similarity=0.039 Sum_probs=35.9
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHH-HHHHHHHHhCCCeEEEe
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD-KKVKKWCAENNITVKEF 88 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd-~~v~~~l~~~gi~~~~~ 88 (184)
..|.+.|+.+.++..+..+.+.+.++. +...|+++.--.|.....| +.+.+.+++.|+.+..-
T Consensus 122 ~~l~~~Gi~v~~vd~~d~~~l~~~i~~-~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD 185 (433)
T PRK08134 122 YTLRRFGIETTFVKPGDIDGWRAAIRP-NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVD 185 (433)
T ss_pred HHHhhCCeEEEEECCCCHHHHHHhcCC-CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEE
Confidence 345667888777765444556555543 3445655543223222233 57777788888776553
No 448
>smart00484 XPGI Xeroderma pigmentosum G I-region. domain in nucleases
Probab=32.96 E-value=75 Score=19.72 Aligned_cols=32 Identities=9% Similarity=-0.057 Sum_probs=25.7
Q ss_pred hCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 147 SHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 147 ~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
.+|++.++..++++..+..|++.--++.|+.+
T Consensus 2 ~~gi~~i~AP~eAeAq~A~L~~~g~vdav~s~ 33 (73)
T smart00484 2 LMGIPYIVAPYEAEAQCAYLAKSGLVDAIITE 33 (73)
T ss_pred cCCCeEEEcCCcHHHHHHHHHhCCCeeEEEcC
Confidence 36899999899999999998886666677665
No 449
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=32.76 E-value=2.2e+02 Score=21.59 Aligned_cols=148 Identities=14% Similarity=0.060 Sum_probs=65.8
Q ss_pred HHHHHHHHHhc--CCeEEEEECChH------H--HHHHHHHHcCc--ceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 20 LADLDRQLKSH--GGQLFIVQGSPI------S--IFQKLKRELNF--TKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 20 L~~L~~~L~~~--g~~L~v~~g~~~------~--~l~~l~~~~~~--~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
++++.+.++.. +..++|+.||-. + ...++++.... -.|.=|+|+-. ..+ +.+++.+++.++.+..
T Consensus 28 ~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l~~~v~~V~GNHD~~~--~~~-~~~~~~l~~~~~~~~~ 104 (232)
T cd07393 28 TEKIKENWDNVVAPEDIVLIPGDISWAMKLEEAKLDLAWIDALPGTKVLLKGNHDYWW--GSA-SKLRKALEESRLALLF 104 (232)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCccCCChHHHHHHHHHHHhCCCCeEEEeCCccccC--CCH-HHHHHHHHhcCeEEec
Confidence 34444444444 788999998843 1 11223344433 23444787621 122 2455666666654432
Q ss_pred ecCceeecccccccccCCCCchhHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHhC------CCeEEEEeCCh--
Q psy17626 88 FVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSH------GGQLFIVQGSP-- 159 (184)
Q Consensus 88 ~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~~~~~~~~~r~~fl~~~L~~L~~~L~~~------g~~L~v~~g~~-- 159 (184)
+....++.-.+.--.+...+. +.+. .++....+...-.+..+.+..|++.|++. +..+.+.++.+
T Consensus 105 -n~~~~~~~i~i~G~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~ 177 (232)
T cd07393 105 -NNAYIDDDVAICGTRGWDNPG--NPWP----PINETLKVEEDEKIFERELERLELSLKAAKKREKEKIKIVMLHYPPAN 177 (232)
T ss_pred -cCcEEECCEEEEEEEeeCCCC--Cccc----cccccccchhHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcC
Confidence 333333332222110000000 0000 11111111112233345556666666543 12455555433
Q ss_pred ----hHHHHHHHHHcCcCeEEE
Q psy17626 160 ----ISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 160 ----~~~l~~l~~~~~~~~v~~ 177 (184)
...+.++.++++++.+++
T Consensus 178 ~~~~~~~~~~~~~~~~v~~vl~ 199 (232)
T cd07393 178 ENGDDSPISKLIEEYGVDICVY 199 (232)
T ss_pred CCCCHHHHHHHHHHcCCCEEEE
Confidence 234566777788887765
No 450
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=32.76 E-value=2.3e+02 Score=21.77 Aligned_cols=70 Identities=13% Similarity=0.268 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCeEEEE-E-CChHHHHHHHHHHc--CcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 18 ECLADLDRQLKSHGGQLFIV-Q-GSPISIFQKLKREL--NFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~-~-g~~~~~l~~l~~~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.++.-++..+++.|.++.|- . |.-..++..|+.+. ++..||.+..+. ..+..+.+.+..+..|++++.+.
T Consensus 27 ~~~e~i~~a~~~~~~~i~vs~SGGKDS~vlL~L~~~~~~~i~vvfiDTG~~--~pet~e~~~~~~~~~gl~l~v~~ 100 (241)
T PRK02090 27 SAQERLAWALENFGGRLALVSSFGAEDAVLLHLVAQVDPDIPVIFLDTGYL--FPETYRFIDELTERLLLNLKVYR 100 (241)
T ss_pred CHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCC--CHHHHHHHHHHHHHhCCCEEEEC
Confidence 34555677777777775554 3 55667888888876 466777766553 33333455555566688877654
No 451
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=32.62 E-value=2.4e+02 Score=21.90 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEe--------CChhHHHHHHHHHcC-cCeEEEcccc
Q psy17626 132 RFLLECLADLDRQLKSHGGQLFIVQ--------GSPISIFQKLKRELN-FTKLCFEQDC 181 (184)
Q Consensus 132 ~fl~~~L~~L~~~L~~~g~~L~v~~--------g~~~~~l~~l~~~~~-~~~v~~n~~~ 181 (184)
..+.+++..+....++.|+.|.+-. ....+.+.+++++.+ -..+-++-|.
T Consensus 119 ~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~v~~~~~~g~~lD~ 177 (279)
T cd00019 119 KRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLIKEKPRVGVCIDT 177 (279)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCCCeEEEEEh
Confidence 3456777777777778899888753 123356777888877 6656555554
No 452
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=32.57 E-value=97 Score=28.30 Aligned_cols=39 Identities=15% Similarity=0.090 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
.....+.-+.|++.|++..++.||.......++++.|++
T Consensus 570 r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~ 608 (741)
T PRK11033 570 RADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGID 608 (741)
T ss_pred chhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 455666666788889999999999999999999999997
No 453
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=32.48 E-value=88 Score=24.50 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 174 (184)
..+.++-+.|++.|+++.++.+.+...+..+++..++..
T Consensus 104 ~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~ 142 (272)
T PRK13223 104 PGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR 142 (272)
T ss_pred CCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh
Confidence 334444455566799999999888887777777777654
No 454
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=32.43 E-value=1.8e+02 Score=24.54 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCeEEEEECChH-HHHHHHHHHcCcceEEEeecccchhHHHH-HHHHHHHHhCCC
Q psy17626 21 ADLDRQLKSHGGQLFIVQGSPI-SIFQKLKRELNFTKLCFEQDCEALWHKRD-KKVKKWCAENNI 83 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~g~~~-~~l~~l~~~~~~~~v~~~~~~~~~~~~rd-~~v~~~l~~~gi 83 (184)
.-+..-|++.|+.......... +.+..+.+ -+.+.||.+---.|--+--| ..+.+..++.|+
T Consensus 117 ~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~-~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~ 180 (396)
T COG0626 117 RLFEKILQKFGVEVTFVDPGDDEALEAAIKE-PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGA 180 (396)
T ss_pred HHHHHHHHhcCeEEEEECCCChHHHHHHhcc-cCceEEEEeCCCCcccccccHHHHHHHHHhcCC
Confidence 3455566777888776654333 44444443 45666777665566655555 677777788773
No 455
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=32.27 E-value=1.4e+02 Score=22.93 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 174 (184)
...+.-+.+++.|+.+.+..|.+...+..+.++.+.+.
T Consensus 24 ~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 24 ETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred HHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 33333337888899999999999998999999999984
No 456
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=32.23 E-value=1.4e+02 Score=19.05 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=26.4
Q ss_pred HHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 49 KRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 49 ~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
++.-.+.-|+...|..+..... .+...+.+.+|++..+.
T Consensus 27 l~~~~~~lvilA~d~~~~~~~~--~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 27 LKKGKAKLVILAEDCSPDSIKK--HLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHTTCESEEEEETTSSSGHHHH--HHHHHHHHTTEEEEEES
T ss_pred HHcCCCcEEEEcCCCChhhhcc--cchhheeccceeEEEEC
Confidence 3334778888888877665544 56667777888876654
No 457
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=32.22 E-value=1.3e+02 Score=23.19 Aligned_cols=30 Identities=17% Similarity=0.407 Sum_probs=23.8
Q ss_pred HHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 144 QLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 144 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
+|++.|+.+.+..|.+...+..+.++.+.+
T Consensus 31 ~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 31 AARAKGVNVVLTTGRPYAGVHRYLKELHME 60 (270)
T ss_pred HHHHCCCEEEEecCCChHHHHHHHHHhCCC
Confidence 366679999988998888777888888764
No 458
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=32.21 E-value=1.2e+02 Score=20.73 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCC-hhHHHHHHHHHcC
Q psy17626 134 LLECLADLDRQLKSHGGQLFIVQGS-PISIFQKLKRELN 171 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~~g~-~~~~l~~l~~~~~ 171 (184)
+...+.++=+.|++.|+++.+..+. +......+.+..+
T Consensus 30 ~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 30 TIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred HHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence 3444555555556667777777665 5554444444444
No 459
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=32.18 E-value=1.4e+02 Score=22.54 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcC------cCeEEEcccc
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN------FTKLCFEQDC 181 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~------~~~v~~n~~~ 181 (184)
+..+.-+...+.++|++|+++...-.+..|.+.+. .-+++.|..|
T Consensus 77 ~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ 127 (220)
T COG4359 77 GFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDY 127 (220)
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCce
No 460
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=32.17 E-value=1.7e+02 Score=24.15 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=36.8
Q ss_pred HHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHH-HHHHHHHHhCCCeEEEe
Q psy17626 23 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD-KKVKKWCAENNITVKEF 88 (184)
Q Consensus 23 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd-~~v~~~l~~~gi~~~~~ 88 (184)
+...+...|+.+........+.+.+.++. +...|+.+..-.|.....| +.+.+.+++.|+.+..-
T Consensus 105 ~~~~~~~~gi~v~~vd~~d~e~l~~ai~~-~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD 170 (380)
T PRK06176 105 FDKVLVKNGLSCTIIDTSDLSQIKKAIKP-NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVD 170 (380)
T ss_pred HHHHHHhcCeEEEEcCCCCHHHHHHhcCc-CceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEE
Confidence 33445666877776655545555555443 4556776544334333322 46777778878766543
No 461
>PRK06683 hypothetical protein; Provisional
Probab=32.12 E-value=1.4e+02 Score=18.97 Aligned_cols=37 Identities=8% Similarity=0.154 Sum_probs=24.3
Q ss_pred HHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 50 RELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 50 ~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
+.-++.-|+...|.++. .-+.+...++..+|++..+.
T Consensus 24 k~gkaklViiA~Da~~~---~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 24 KNGIVKEVVIAEDADMR---LTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred HcCCeeEEEEECCCCHH---HHHHHHHHHHhcCCCEEEEC
Confidence 44677788888776654 22345666677788877655
No 462
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=32.06 E-value=2.4e+02 Score=23.21 Aligned_cols=81 Identities=11% Similarity=0.097 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcC-CeEEEEECCh------HHHHHHHHHHcCcceEEEee-cccchhHHHHHHHHHHHHhCCCe-EEEe
Q psy17626 18 ECLADLDRQLKSHG-GQLFIVQGSP------ISIFQKLKRELNFTKLCFEQ-DCEALWHKRDKKVKKWCAENNIT-VKEF 88 (184)
Q Consensus 18 ~sL~~L~~~L~~~g-~~L~v~~g~~------~~~l~~l~~~~~~~~v~~~~-~~~~~~~~rd~~v~~~l~~~gi~-~~~~ 88 (184)
.++.++.+.+++.| .+..|+.|.. .+.+.+.+++.+++...++. .-.|....-+ ++.+.+++.++. +..+
T Consensus 9 g~~~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~-~~~~~~~~~~~D~IIai 87 (375)
T cd08194 9 GAVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVE-EGVKLAKEGGCDVIIAL 87 (375)
T ss_pred CHHHHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHH-HHHHHHHhcCCCEEEEe
Confidence 46777777787666 4566666542 23455556666777555542 2233333333 444455666776 4557
Q ss_pred cCceeeccccc
Q psy17626 89 VSHTLWDPEVV 99 (184)
Q Consensus 89 ~~~~L~~p~~i 99 (184)
.+...+|-.+.
T Consensus 88 GGGS~~D~AKa 98 (375)
T cd08194 88 GGGSPIDTAKA 98 (375)
T ss_pred CCchHHHHHHH
Confidence 77777665543
No 463
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=31.96 E-value=2.3e+02 Score=21.58 Aligned_cols=126 Identities=11% Similarity=0.233 Sum_probs=71.2
Q ss_pred eEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCceeecccccccccCCCCchhHH
Q psy17626 33 QLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYK 112 (184)
Q Consensus 33 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~~~~~~~v~~ 112 (184)
..++..-+|...++.+++ .+++.|.+|-|.+..- .++-+..++.|++.-. .+.| .+|...+.
T Consensus 62 dvHLMv~~p~~~i~~~~~-~gad~i~~H~Ea~~~~----~~~l~~ik~~g~k~Gl-----alnP--------~Tp~~~i~ 123 (220)
T PRK08883 62 DVHLMVKPVDRIIPDFAK-AGASMITFHVEASEHV----DRTLQLIKEHGCQAGV-----VLNP--------ATPLHHLE 123 (220)
T ss_pred EEEeccCCHHHHHHHHHH-hCCCEEEEcccCcccH----HHHHHHHHHcCCcEEE-----EeCC--------CCCHHHHH
Confidence 345555688888888776 5899999998865332 2334445667775331 1222 23555566
Q ss_pred HHHHHhhhcc--ccccCcchhHHHHHHHHHHH---HHHHhCCCeEEE-EeCCh-hHHHHHHHHHcCcCeEEE
Q psy17626 113 MYLHTVSCIG--TMHIGYNRFRFLLECLADLD---RQLKSHGGQLFI-VQGSP-ISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 113 ~F~~~~~~~~--~~~~~~~r~~fl~~~L~~L~---~~L~~~g~~L~v-~~g~~-~~~l~~l~~~~~~~~v~~ 177 (184)
.+........ ...++..-+.|+..+++.++ +.+.+.|..+.+ ..|.. .+.+.++ .+.|++.+..
T Consensus 124 ~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l-~~aGAd~vVv 194 (220)
T PRK08883 124 YIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREI-AEAGADMFVA 194 (220)
T ss_pred HHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHH-HHcCCCEEEE
Confidence 6655544332 23345555667776655554 445455533333 34544 5566655 4788887754
No 464
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=31.90 E-value=1.3e+02 Score=24.08 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=37.4
Q ss_pred eEEEEECChHH------------HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeE
Q psy17626 33 QLFIVQGSPIS------------IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 33 ~L~v~~g~~~~------------~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
.|+++.|+-.+ .+..|.+..++=+|.-|+||.....+.. +...+++.++.+
T Consensus 75 DlivltGD~~~~~~~~~~~~~~~~L~~L~~~~gv~av~GNHd~~~~~~~~~--~~~l~~~~~~~~ 137 (284)
T COG1408 75 DLIVLTGDYVDGDRPPGVAALALFLAKLKAPLGVFAVLGNHDYGVDRSNVY--IGDLLEELGRVV 137 (284)
T ss_pred CEEEEEeeeecCCCCCCHHHHHHHHHhhhccCCEEEEecccccccccccch--hhhhhhhcceee
Confidence 89998876444 4777777889999999999988766654 666666666433
No 465
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=31.85 E-value=3.4e+02 Score=23.51 Aligned_cols=58 Identities=22% Similarity=0.381 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCeEEEE--ECChHHHHHHHHHHc-----------------CcceEEEeecccchhHHHHHHHHHHHHhCC
Q psy17626 22 DLDRQLKSHGGQLFIV--QGSPISIFQKLKREL-----------------NFTKLCFEQDCEALWHKRDKKVKKWCAENN 82 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v~--~g~~~~~l~~l~~~~-----------------~~~~v~~~~~~~~~~~~rd~~v~~~l~~~g 82 (184)
.|+..+.++|.+|.|+ .||+.+.+.+..+.. .-..|+...+.+ ..+-+.+.+.++++|
T Consensus 283 ~l~~~i~~~~~~l~IR~DSGD~~~l~~~~~~~L~~~FG~~ln~~G~kvL~~~v~Ii~gd~id---e~~i~~il~~L~~~G 359 (470)
T PHA02594 283 ELKDEIMARGGKLVIRPDSGDPVDIICGALETLGEIFGGTVNSKGYKVLDEHVRLIQGDGIT---LERINRILTRMKENG 359 (470)
T ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHHHhcCCcccCccccccCCCeEEEEcCCCC---HHHHHHHHHHHHHCC
Confidence 7888888889998666 599998866644433 223445544444 223334555667777
No 466
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=31.85 E-value=39 Score=26.44 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHc
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 52 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 52 (184)
...+|=+.|.+.++|++|+.+.-.++|..+.++.
T Consensus 94 g~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~ 127 (246)
T PF05822_consen 94 GVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA 127 (246)
T ss_dssp THHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc
Confidence 3445566677777777777766666666666653
No 467
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=31.82 E-value=1.1e+02 Score=23.99 Aligned_cols=40 Identities=23% Similarity=0.197 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEE
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 176 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~ 176 (184)
-+.++-+.+.+.|..+++..+...+....++.+.||..+=
T Consensus 118 ~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~ 157 (261)
T cd03334 118 YLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVL 157 (261)
T ss_pred HHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEE
Confidence 3555566677889999999988888888888999988663
No 468
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=31.79 E-value=3e+02 Score=22.77 Aligned_cols=41 Identities=12% Similarity=0.055 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCeEEEEEC---Ch-HHH---HHHHHHHcCcceEEE
Q psy17626 19 CLADLDRQLKSHGGQLFIVQG---SP-ISI---FQKLKRELNFTKLCF 59 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g---~~-~~~---l~~l~~~~~~~~v~~ 59 (184)
.+..+.+.|++.|+...++.| +| .+. +.+++++.+++.|+.
T Consensus 45 ~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~Iia 92 (379)
T TIGR02638 45 VADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIA 92 (379)
T ss_pred chHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 356677888888888777643 23 233 555566778887765
No 469
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=31.76 E-value=3e+02 Score=22.78 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=48.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeE
Q psy17626 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 6 ~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
-..++..+.|+-+.|.-+++ .|+++++..-....-+.++.++.++ ...+...+++..+..|+.+
T Consensus 244 f~~s~~q~~F~e~~L~~ake----~~I~~vl~~P~V~~~~~~~~~~~~~------------~~~w~~~i~~l~~~~~~~~ 307 (345)
T PF07611_consen 244 FTFSETQFFFLEKFLKLAKE----NGIPVVLWWPKVSPPYEKLYKELKV------------YESWWPIIKKLAKEYGIPF 307 (345)
T ss_pred CCCChhHHHHHHHHHHHHHH----cCCcEEEEEeccCHHHHHHHHhhch------------hhHHHHHHHHHHhcCCceE
Confidence 34566777777777766544 5999988887777788888888776 2223334445556678877
Q ss_pred EEecCceeecccc
Q psy17626 86 KEFVSHTLWDPEV 98 (184)
Q Consensus 86 ~~~~~~~L~~p~~ 98 (184)
.-.....-+..+.
T Consensus 308 ~dmn~d~~~~C~~ 320 (345)
T PF07611_consen 308 LDMNEDPSYKCDD 320 (345)
T ss_pred ecccCCCCcchhh
Confidence 6555433333333
No 470
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=31.74 E-value=4.8e+02 Score=25.16 Aligned_cols=22 Identities=14% Similarity=-0.103 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEEE
Q psy17626 134 LLECLADLDRQLKSHGGQLFIV 155 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~ 155 (184)
...+.+++....++.|-|+.+.
T Consensus 690 ~~~s~ee~~~~~~~igyPvVVK 711 (1068)
T PRK12815 690 TATDEEEAFAFAKRIGYPVLIR 711 (1068)
T ss_pred EeCCHHHHHHHHHhcCCCEEEE
Confidence 3445666666667778888774
No 471
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=31.72 E-value=1.5e+02 Score=22.64 Aligned_cols=31 Identities=19% Similarity=0.467 Sum_probs=23.8
Q ss_pred HHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 143 RQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 143 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
+.|++.|+.+.+..|.+...+..+.++.+.+
T Consensus 26 ~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 26 AKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred HHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 3456668888888888887777788887776
No 472
>PLN02476 O-methyltransferase
Probab=31.69 E-value=2.7e+02 Score=22.22 Aligned_cols=60 Identities=7% Similarity=0.077 Sum_probs=38.4
Q ss_pred HHHHHHhcCC--eEEEEECChHHHHHHHHHH---cCcceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 23 LDRQLKSHGG--QLFIVQGSPISIFQKLKRE---LNFTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 23 L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~---~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
-++.+++.|. +..++.|++.+.|+++..+ -..+-||.+.+-..|..--+ .+.+.++..|+
T Consensus 159 Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e-~~l~lL~~GGv 223 (278)
T PLN02476 159 AKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFE-LLLQLVRVGGV 223 (278)
T ss_pred HHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHHHHHHHHH-HHHHhcCCCcE
Confidence 3344445555 5888999999999998743 36889999876443333333 33445555555
No 473
>PF13728 TraF: F plasmid transfer operon protein
Probab=31.56 E-value=1.3e+02 Score=22.80 Aligned_cols=42 Identities=7% Similarity=0.214 Sum_probs=19.9
Q ss_pred HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 44 IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 44 ~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
+|..+.++++. ||+-+.-+++.......++.+.++.|+.+..
T Consensus 114 ~l~~la~~~gL--~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~ 155 (215)
T PF13728_consen 114 ALKQLAQKYGL--FFFYRSDCPYCQQQAPILQQFADKYGFSVIP 155 (215)
T ss_pred HHHHHhhCeEE--EEEEcCCCchhHHHHHHHHHHHHHhCCEEEE
Confidence 34444444332 4444444555555555555555555555443
No 474
>PRK05967 cystathionine beta-lyase; Provisional
Probab=31.50 E-value=2.3e+02 Score=23.73 Aligned_cols=63 Identities=17% Similarity=0.084 Sum_probs=40.6
Q ss_pred HHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHH-HHHHHHHHhCCCeEEE
Q psy17626 24 DRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD-KKVKKWCAENNITVKE 87 (184)
Q Consensus 24 ~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd-~~v~~~l~~~gi~~~~ 87 (184)
.+-++..|+.+.++..+..+.+.+.++. +...|+.+.--.|.....| +.|.+.+++.|+.+..
T Consensus 121 ~~~l~~~Gi~v~~vd~~~~e~l~~al~~-~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvV 184 (395)
T PRK05967 121 DTMLKRLGVEVEYYDPEIGAGIAKLMRP-NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMM 184 (395)
T ss_pred HHHHHhcCeEEEEeCCCCHHHHHHhcCc-CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEE
Confidence 3445667888877755545666666643 3556777765556554444 6788888888876554
No 475
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.48 E-value=1.1e+02 Score=25.45 Aligned_cols=13 Identities=8% Similarity=-0.066 Sum_probs=7.0
Q ss_pred HHHHHHhCCCeEE
Q psy17626 74 VKKWCAENNITVK 86 (184)
Q Consensus 74 v~~~l~~~gi~~~ 86 (184)
.++.+++.||+.+
T Consensus 198 wAkLmkK~GVkgi 210 (481)
T COG5310 198 WAKLMKKAGVKGI 210 (481)
T ss_pred HHHHHHHcCCceE
Confidence 4445556666544
No 476
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=31.36 E-value=86 Score=21.53 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHhCCCeEEEecCc
Q psy17626 67 WHKRDKKVKKWCAENNITVKEFVSH 91 (184)
Q Consensus 67 ~~~rd~~v~~~l~~~gi~~~~~~~~ 91 (184)
-.+||....+.|++.|..|..|+.+
T Consensus 92 n~~rD~~~~~~L~~~Gw~Vlr~We~ 116 (117)
T TIGR00632 92 NVERDRRVNSRLQELGWRVLRVWEC 116 (117)
T ss_pred HHHHHHHHHHHHHHCcCEEEEEeCC
Confidence 3688999999999999999988764
No 477
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=31.35 E-value=1.8e+02 Score=20.16 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEE
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 59 (184)
...|..+.+++++.|..++-+.-+..+.+.+++++.+++-.+.
T Consensus 50 ~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l 92 (154)
T PRK09437 50 ACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLL 92 (154)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEE
Confidence 4556677777777777766665555677777777776654444
No 478
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=31.30 E-value=1.1e+02 Score=20.46 Aligned_cols=15 Identities=27% Similarity=0.146 Sum_probs=8.7
Q ss_pred HHHHHHHHhCCCeEE
Q psy17626 72 KKVKKWCAENNITVK 86 (184)
Q Consensus 72 ~~v~~~l~~~gi~~~ 86 (184)
+.+++++++.|+.+.
T Consensus 74 ~~~~~~~~~~~~~~p 88 (126)
T cd03012 74 ANVKSAVLRYGITYP 88 (126)
T ss_pred HHHHHHHHHcCCCCC
Confidence 355666666666543
No 479
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=31.24 E-value=82 Score=16.18 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHH
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKR 50 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~ 50 (184)
..+|++.|+++|.+ ..|.-.+.+.++.+
T Consensus 6 ~~~Lk~~l~~~gl~---~~G~K~~Lv~Rl~~ 33 (35)
T smart00513 6 VSELKDELKKRGLS---TSGTKAELVDRLLE 33 (35)
T ss_pred HHHHHHHHHHcCCC---CCCCHHHHHHHHHH
Confidence 56788888888887 35666666555543
No 480
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=31.22 E-value=2.3e+02 Score=23.78 Aligned_cols=51 Identities=12% Similarity=0.041 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 40 SPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 40 ~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
...+.+.+++++++.++++.--+-.......-+.+.+.|++.|+.+..|.+
T Consensus 9 g~~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~ 59 (414)
T cd08190 9 GVTAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDD 59 (414)
T ss_pred CHHHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCC
Confidence 567888899999888877766554333333345788888888998876653
No 481
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=31.13 E-value=1.5e+02 Score=23.01 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=33.4
Q ss_pred HHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEccc
Q psy17626 140 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180 (184)
Q Consensus 140 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~ 180 (184)
++-.+....|+|+++..+.|.+.=-++++++|+|=|-+-++
T Consensus 183 emv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~ 223 (237)
T TIGR00129 183 EMVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARN 223 (237)
T ss_pred HHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecC
Confidence 44555556799999999999887788999999998877654
No 482
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=31.06 E-value=2e+02 Score=22.57 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEe-CChhHHHHHHHHHcCcCeEEEc
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQ-GSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~-g~~~~~l~~l~~~~~~~~v~~n 178 (184)
+.|.++.+.+++.|++.++.+ ..+...+..++++.|+.-+..+
T Consensus 207 ~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld 250 (282)
T cd01017 207 KQLAELVEFVKKSDVKYIFFEENASSKIAETLAKETGAKLLVLN 250 (282)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCcEEEec
Confidence 578888889999999988776 4445677788889998877654
No 483
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=31.06 E-value=2.4e+02 Score=23.79 Aligned_cols=67 Identities=10% Similarity=0.033 Sum_probs=38.8
Q ss_pred HHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHH-HHHHHHHHhCCCeEEEecCc
Q psy17626 24 DRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD-KKVKKWCAENNITVKEFVSH 91 (184)
Q Consensus 24 ~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd-~~v~~~l~~~gi~~~~~~~~ 91 (184)
...+...|+.+.....+..+.+.+.++. +...|+.+.-..|....-| +.+.+.+++.|+.+..-..+
T Consensus 120 ~~~~~~~G~~v~~vd~~d~~~l~~ai~~-~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~ 187 (427)
T PRK05994 120 GHAFKSFGWQVRWADADDPASFERAITP-RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTL 187 (427)
T ss_pred HHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCc
Confidence 3345566877776655444555555543 4566777544434433333 57778888888876654443
No 484
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=31.04 E-value=2e+02 Score=22.82 Aligned_cols=66 Identities=18% Similarity=0.026 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
+.|-....+.|++.|....++..+..+.+.++.+ .+++.|| +--.+.+ ..|..+...|+..||++.
T Consensus 21 l~s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l~~-~~~d~vf-~~lhG~~--ge~~~i~~~le~~gip~~ 86 (296)
T PRK14569 21 LKSGKAVLDSLISQGYDAVGVDASGKELVAKLLE-LKPDKCF-VALHGED--GENGRVSALLEMLEIKHT 86 (296)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCchhHHHHhhc-cCCCEEE-EeCCCCC--CCChHHHHHHHHcCCCee
Confidence 4555666667777787766654333333444432 3455333 3221211 134456666666676654
No 485
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=31.03 E-value=2.3e+02 Score=23.33 Aligned_cols=66 Identities=9% Similarity=0.006 Sum_probs=36.2
Q ss_pred HHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHH-HHHHHHHHHhCCCeEEEecC
Q psy17626 24 DRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR-DKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 24 ~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~r-d~~v~~~l~~~gi~~~~~~~ 90 (184)
...+...|+.+..+..+..+.+.+.++. +...|+.+.-..|....- -+.+.+.+++.|+.+..-..
T Consensus 111 ~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a 177 (380)
T TIGR01325 111 SEILPRFGIEVSFVDPTDLNAWEAAVKP-NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNV 177 (380)
T ss_pred HHHHHHhCCEEEEECCCCHHHHHHhcCC-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECC
Confidence 3445556777766655444445444432 445666554333332222 25777788888887665433
No 486
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=31.01 E-value=1.9e+02 Score=20.38 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=8.6
Q ss_pred HHHHHHHHHhc--CCeEE
Q psy17626 20 LADLDRQLKSH--GGQLF 35 (184)
Q Consensus 20 L~~L~~~L~~~--g~~L~ 35 (184)
+.++.+.|.++ |-.|+
T Consensus 19 l~~~a~~l~~ll~Gf~l~ 36 (142)
T PRK05234 19 LVAWVKAHKDLLEQHELY 36 (142)
T ss_pred HHHHHHHHHHHhcCCEEE
Confidence 44555555555 65554
No 487
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=30.99 E-value=2.4e+02 Score=21.47 Aligned_cols=139 Identities=12% Similarity=0.011 Sum_probs=0.0
Q ss_pred EEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCce----------eecccccccccCC
Q psy17626 36 IVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHT----------LWDPEVVIQTNGN 105 (184)
Q Consensus 36 v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~----------L~~p~~i~~~~~~ 105 (184)
++..-+.+...+.+++.|.+.|=....+ ...-+.+++.+++.|+++..+.... ...|+.. .
T Consensus 10 ~~~~~~l~e~~~~~~e~G~~~vEl~~~~----~~~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~-----~ 80 (254)
T TIGR03234 10 LFTELPFLERFAAAAQAGFTGVEYLFPY----DWDAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGRE-----E 80 (254)
T ss_pred hhcCCCHHHHHHHHHHcCCCEEEecCCc----cCCHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccH-----H
Q ss_pred CCchhHHHHHHHhhhccccccCcc------------hhHHHHHHHHHHHHHHHhCCCeEEEEe----------CChhHHH
Q psy17626 106 VPPLTYKMYLHTVSCIGTMHIGYN------------RFRFLLECLADLDRQLKSHGGQLFIVQ----------GSPISIF 163 (184)
Q Consensus 106 ~~~~v~~~F~~~~~~~~~~~~~~~------------r~~fl~~~L~~L~~~L~~~g~~L~v~~----------g~~~~~l 163 (184)
..-..+.........++.+..... .+..+.+++.++..-.++.|+.+.+-. ....+.+
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~ 160 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQA 160 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHH
Q ss_pred HHHHHHcCcCeEEEcccccC
Q psy17626 164 QKLKRELNFTKLCFEQDCEA 183 (184)
Q Consensus 164 ~~l~~~~~~~~v~~n~~~~~ 183 (184)
.+++++.+-..+-++.|+..
T Consensus 161 ~~li~~v~~~~~~i~~D~~h 180 (254)
T TIGR03234 161 LAVIDDVGRENLKLQYDLYH 180 (254)
T ss_pred HHHHHHhCCCCEeEeeehhh
No 488
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=30.76 E-value=1.4e+02 Score=18.71 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=30.2
Q ss_pred HHHHHHHHHhc--CCeEEEEECCh--HHHHHHHHHHcCcceEEEeec
Q psy17626 20 LADLDRQLKSH--GGQLFIVQGSP--ISIFQKLKRELNFTKLCFEQD 62 (184)
Q Consensus 20 L~~L~~~L~~~--g~~L~v~~g~~--~~~l~~l~~~~~~~~v~~~~~ 62 (184)
+..+++.|+++ |..|.|+..++ .+.|+.+|+..+-+-+..+.+
T Consensus 23 ll~~kk~l~~l~~G~~l~V~~dd~~~~~di~~~~~~~G~~~~~~~~~ 69 (81)
T PRK00299 23 VMMVRKTVRNMQPGETLLIIADDPATTRDIPSFCRFMDHELLAQETE 69 (81)
T ss_pred HHHHHHHHHcCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEEEEec
Confidence 34567777776 56688887655 467999999888777655543
No 489
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=30.70 E-value=1.3e+02 Score=23.00 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCc
Q psy17626 134 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 172 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 172 (184)
+...+.++-+++.+.|+.+.+..|.+...+.++.++++.
T Consensus 22 ~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~ 60 (249)
T TIGR01485 22 ALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPL 60 (249)
T ss_pred HHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCC
Confidence 445566666678888999999999998888888776654
No 490
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=30.67 E-value=3e+02 Score=22.52 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCC-eEEEEECChH------HHHHHHHHHcCcceEEEee-cccchhHHHHHHHHHHHHhCCCe-EEEe
Q psy17626 18 ECLADLDRQLKSHGG-QLFIVQGSPI------SIFQKLKRELNFTKLCFEQ-DCEALWHKRDKKVKKWCAENNIT-VKEF 88 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~-~L~v~~g~~~------~~l~~l~~~~~~~~v~~~~-~~~~~~~~rd~~v~~~l~~~gi~-~~~~ 88 (184)
.++.+|.+.|+++|. +..|+.|... +.+.+.+++.+++...+.. +..|.....+ ++.+.+++.++. +..+
T Consensus 9 g~l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~-~~~~~~~~~~~d~Iiai 87 (370)
T cd08551 9 GAIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVD-AAVAAYREEGCDGVIAV 87 (370)
T ss_pred CHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHH-HHHHHHHhcCCCEEEEe
Confidence 467788888888773 5666655422 2345555555666555542 2223333333 334444555554 3445
Q ss_pred cCceeeccccc
Q psy17626 89 VSHTLWDPEVV 99 (184)
Q Consensus 89 ~~~~L~~p~~i 99 (184)
.+....|-.+.
T Consensus 88 GGGs~~D~AK~ 98 (370)
T cd08551 88 GGGSVLDTAKA 98 (370)
T ss_pred CCchHHHHHHH
Confidence 55555544433
No 491
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=30.55 E-value=2e+02 Score=20.99 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCCeEEEEe-CChhHHHHHHHHHcCcCeEEE
Q psy17626 139 ADLDRQLKSHGGQLFIVQ-GSPISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 139 ~~L~~~L~~~g~~L~v~~-g~~~~~l~~l~~~~~~~~v~~ 177 (184)
.++.+.+++.|+.+.++- |.....|.++++..|-.....
T Consensus 126 ~~~~~~l~~~~I~v~~IgiG~~~~~L~~ia~~tgG~~~~~ 165 (183)
T cd01453 126 YETIDKLKKENIRVSVIGLSAEMHICKEICKATNGTYKVI 165 (183)
T ss_pred HHHHHHHHHcCcEEEEEEechHHHHHHHHHHHhCCeeEee
Confidence 345566667777776664 555567777877776555443
No 492
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=30.45 E-value=1.6e+02 Score=22.55 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=25.7
Q ss_pred HHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 143 RQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 143 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
+.|++.|+++.+..|.+...+..+.++.++.
T Consensus 26 ~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 26 ERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred HHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 3466779999999999988888898998864
No 493
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=30.41 E-value=2.2e+02 Score=20.74 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECC----hHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQGS----PISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g~----~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
...|..+|..+.++.......++|+... ..+.+.++.+..+.-.++.+..-......+..-++. ..|=-+...
T Consensus 9 ~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~~~n~G~~~a~n~g~~~---a~gd~i~~l 85 (224)
T cd06442 9 RENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKA---ARGDVIVVM 85 (224)
T ss_pred hhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCCceEEEecCCCCChHHHHHHHHHH---cCCCEEEEE
Confidence 3567788888887765346777777532 344556666555443555554444445555544443 224223344
Q ss_pred cCceeeccccc
Q psy17626 89 VSHTLWDPEVV 99 (184)
Q Consensus 89 ~~~~L~~p~~i 99 (184)
+++..++|+.+
T Consensus 86 D~D~~~~~~~l 96 (224)
T cd06442 86 DADLSHPPEYI 96 (224)
T ss_pred ECCCCCCHHHH
Confidence 55555566543
No 494
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=30.40 E-value=1.8e+02 Score=22.60 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEE
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQ 38 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~ 38 (184)
.-+.+.|..+...+.+.+++|+|+.
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVID 140 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVID 140 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEE
T ss_pred HHHHHHHHHHHhhccccceEEEEec
Confidence 4466777777777777788888873
No 495
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=30.38 E-value=1.8e+02 Score=22.59 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=24.3
Q ss_pred HHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 143 RQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 143 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
+.|.+.|+.+.+..|.+...+..+.++.+.+
T Consensus 31 ~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 31 KALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred HHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 3456679999999888888788888888765
No 496
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=30.33 E-value=1.6e+02 Score=21.75 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcC-cCeEEEc
Q psy17626 134 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN-FTKLCFE 178 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~-~~~v~~n 178 (184)
+.....+.-+.|++.|+.+.+..|.+...+..+.++++ .+.+.++
T Consensus 16 i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~~i~~ 61 (225)
T TIGR01482 16 INESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTPDPVIAE 61 (225)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCeEEEe
No 497
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=30.28 E-value=1.3e+02 Score=23.65 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEE
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 176 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~ 176 (184)
.+.++=+.|++.|+++.|+.+.....+..+.+..|+...|
T Consensus 146 g~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F 185 (273)
T PRK13225 146 GVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLF 185 (273)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhhe
Confidence 3445555667779999999988888888888888887654
No 498
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=30.24 E-value=1.4e+02 Score=23.51 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=21.2
Q ss_pred HHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEee
Q psy17626 26 QLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (184)
Q Consensus 26 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 61 (184)
+....|+|+++-.+-|...=-+++++.|++-|-+.+
T Consensus 216 Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R 251 (263)
T PRK00724 216 KAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFAR 251 (263)
T ss_pred HHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEec
Confidence 334446666666666666666666666666665544
No 499
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=30.17 E-value=2.7e+02 Score=23.09 Aligned_cols=66 Identities=11% Similarity=0.085 Sum_probs=39.1
Q ss_pred HHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHH-HHHHHHHHhCCCeEEEec
Q psy17626 23 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRD-KKVKKWCAENNITVKEFV 89 (184)
Q Consensus 23 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd-~~v~~~l~~~gi~~~~~~ 89 (184)
+...+...|+.+....-+..+.+.+.++. +...|+.+.-..|.....| +++.+.+++.|+.+..-+
T Consensus 117 ~~~~~~~~G~~v~~vd~~d~~~l~~~i~~-~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~ 183 (390)
T PRK08133 117 FEKIFARFGIETTFVDLTDLDAWRAAVRP-NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDN 183 (390)
T ss_pred HHHHHHHcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEEC
Confidence 33445667888777755555666665543 4456666543334433332 577788888888776544
No 500
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.12 E-value=2.4e+02 Score=21.18 Aligned_cols=74 Identities=11% Similarity=0.066 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEEC--ChH---HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 12 RFRFLLECLADLDRQLKSHGGQLFIVQG--SPI---SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 12 r~~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
+..|..+-+..+.+.+++.|..+.+..+ ++. +.+..+. ..+++.|+..-. ....-+..+.. +.+.||++.
T Consensus 10 ~~~~~~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~-~~~vdgiii~~~---~~~~~~~~~~~-~~~~~ipvV 84 (267)
T cd06322 10 QHPFYIELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFI-TKKVDAIVLSPV---DSKGIRAAIAK-AKKAGIPVI 84 (267)
T ss_pred ccHHHHHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHH-HcCCCEEEEcCC---ChhhhHHHHHH-HHHCCCCEE
Confidence 3468889999999999999999988754 333 2333433 568998888531 11111223433 566799998
Q ss_pred EecC
Q psy17626 87 EFVS 90 (184)
Q Consensus 87 ~~~~ 90 (184)
.++.
T Consensus 85 ~~~~ 88 (267)
T cd06322 85 TVDI 88 (267)
T ss_pred EEcc
Confidence 8864
Done!