Query psy17626
Match_columns 184
No_of_seqs 278 out of 1980
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 18:53:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fy4_A 6-4 photolyase; DNA rep 99.9 3.4E-25 1.2E-29 187.2 11.4 119 4-122 54-172 (537)
2 3tvs_A Cryptochrome-1; circadi 99.9 2.3E-24 7.9E-29 182.3 11.4 121 4-124 47-170 (538)
3 1owl_A Photolyase, deoxyribodi 99.9 2.1E-22 7.1E-27 168.9 14.6 116 5-121 44-159 (484)
4 1np7_A DNA photolyase; protein 99.9 2.6E-22 8.8E-27 168.6 14.1 115 4-119 51-165 (489)
5 2j4d_A Cryptochrome 3, cryptoc 99.9 1E-21 3.5E-26 166.1 14.5 116 4-120 86-203 (525)
6 2wq7_A RE11660P; lyase-DNA com 99.9 7.9E-22 2.7E-26 167.3 12.0 117 6-122 77-193 (543)
7 1u3d_A Cryptochrome 1 apoprote 99.8 1.6E-20 5.5E-25 158.3 14.8 113 8-121 55-168 (509)
8 1dnp_A DNA photolyase; DNA rep 99.8 4.3E-21 1.5E-25 160.4 11.0 113 6-121 44-160 (471)
9 2e0i_A 432AA long hypothetical 99.8 4.4E-20 1.5E-24 152.9 12.7 105 8-121 46-150 (440)
10 2j07_A Deoxyribodipyrimidine p 99.8 1.2E-19 4.2E-24 149.6 11.6 102 9-119 43-144 (420)
11 3umv_A Deoxyribodipyrimidine p 99.8 1.3E-18 4.4E-23 146.2 11.7 108 6-117 83-192 (506)
12 2xry_A Deoxyribodipyrimidine p 99.7 1.3E-17 4.3E-22 139.9 12.0 104 7-116 81-184 (482)
13 3zxs_A Cryptochrome B, rscryb; 99.3 2.6E-11 9E-16 101.4 10.4 104 7-119 56-169 (522)
14 3tvs_A Cryptochrome-1; circadi 99.1 9.3E-12 3.2E-16 105.4 1.8 75 110-184 35-112 (538)
15 3fy4_A 6-4 photolyase; DNA rep 99.1 6.9E-11 2.4E-15 99.9 5.5 63 122-184 54-116 (537)
16 1owl_A Photolyase, deoxyribodi 99.0 9.1E-11 3.1E-15 98.3 3.0 71 114-184 35-105 (484)
17 2wq7_A RE11660P; lyase-DNA com 99.0 1.7E-10 5.9E-15 97.9 2.6 63 122-184 75-137 (543)
18 1dnp_A DNA photolyase; DNA rep 99.0 9.9E-11 3.4E-15 97.8 0.8 74 111-184 31-108 (471)
19 1np7_A DNA photolyase; protein 98.9 2.9E-10 1E-14 95.4 3.2 62 123-184 52-113 (489)
20 2j4d_A Cryptochrome 3, cryptoc 98.9 2.2E-09 7.5E-14 90.8 6.5 61 124-184 88-148 (525)
21 2e0i_A 432AA long hypothetical 98.9 4.6E-10 1.6E-14 92.9 1.8 65 118-184 37-102 (440)
22 2j07_A Deoxyribodipyrimidine p 98.8 3.9E-09 1.3E-13 87.0 6.5 58 127-184 43-100 (420)
23 1u3d_A Cryptochrome 1 apoprote 98.8 1.7E-09 5.8E-14 91.2 3.6 58 127-184 56-114 (509)
24 2xry_A Deoxyribodipyrimidine p 98.8 1.2E-08 4E-13 85.5 6.6 58 126-183 82-139 (482)
25 3umv_A Deoxyribodipyrimidine p 98.7 1.5E-08 5.2E-13 85.2 7.0 56 125-181 84-139 (506)
26 3zxs_A Cryptochrome B, rscryb; 97.2 0.00079 2.7E-08 56.5 7.0 55 125-179 56-117 (522)
27 3olq_A Universal stress protei 93.8 1.7 5.8E-05 33.2 16.1 162 18-179 73-274 (319)
28 3hcw_A Maltose operon transcri 93.7 1.7 5.8E-05 32.8 12.9 156 13-181 24-202 (295)
29 3loq_A Universal stress protei 93.5 1.9 6.4E-05 32.7 16.4 159 15-178 83-258 (294)
30 3mt0_A Uncharacterized protein 92.6 2.6 8.8E-05 31.8 16.0 159 19-178 52-244 (290)
31 1jmv_A USPA, universal stress 91.0 2.3 8E-05 28.1 9.4 65 23-88 69-136 (141)
32 3fvv_A Uncharacterized protein 90.4 1.9 6.4E-05 31.0 8.7 45 17-61 94-138 (232)
33 3huu_A Transcription regulator 90.0 5 0.00017 30.3 11.9 156 13-180 39-211 (305)
34 3s3t_A Nucleotide-binding prot 89.7 3.1 0.00011 27.6 9.1 73 15-87 66-144 (146)
35 1tq8_A Hypothetical protein RV 89.6 1 3.4E-05 31.2 6.3 71 18-88 81-156 (163)
36 4fe7_A Xylose operon regulator 89.6 1.6 5.6E-05 34.9 8.4 154 13-181 36-213 (412)
37 3gv0_A Transcriptional regulat 89.2 4.3 0.00015 30.3 10.1 155 14-181 23-198 (288)
38 1mjh_A Protein (ATP-binding do 88.9 1.4 4.8E-05 30.1 6.6 73 17-89 82-158 (162)
39 3e61_A Putative transcriptiona 88.7 5.8 0.0002 29.3 13.7 153 13-180 20-186 (277)
40 3fdx_A Putative filament prote 88.1 1.8 6.2E-05 28.7 6.6 72 15-87 63-141 (143)
41 3hgm_A Universal stress protei 87.6 3.8 0.00013 27.1 8.1 73 14-86 66-145 (147)
42 3n28_A Phosphoserine phosphata 87.6 3.6 0.00012 31.9 8.9 43 137-179 182-224 (335)
43 3egc_A Putative ribose operon 87.5 7.3 0.00025 29.0 10.5 154 14-180 21-195 (291)
44 3k4h_A Putative transcriptiona 87.2 7.5 0.00026 28.9 13.3 154 14-180 26-201 (292)
45 3h75_A Periplasmic sugar-bindi 86.8 9.1 0.00031 29.4 13.9 73 14-91 17-95 (350)
46 3dlo_A Universal stress protei 86.2 1.5 5.3E-05 29.9 5.4 74 14-87 74-153 (155)
47 3l49_A ABC sugar (ribose) tran 86.1 8.6 0.00029 28.5 11.9 158 14-180 18-200 (291)
48 3ksm_A ABC-type sugar transpor 85.5 8.8 0.0003 28.1 11.3 159 14-180 13-196 (276)
49 2gm3_A Unknown protein; AT3G01 85.4 2.7 9.3E-05 29.0 6.5 72 18-89 87-162 (175)
50 3fg9_A Protein of universal st 84.9 4 0.00014 27.5 7.1 73 15-87 76-154 (156)
51 2dum_A Hypothetical protein PH 84.3 2.1 7.2E-05 29.4 5.5 74 16-89 76-155 (170)
52 3vni_A Xylose isomerase domain 83.6 4.9 0.00017 30.2 7.7 135 41-181 18-185 (294)
53 3ij5_A 3-deoxy-D-manno-octulos 83.1 1.7 5.8E-05 31.7 4.7 55 23-83 84-138 (211)
54 3n07_A 3-deoxy-D-manno-octulos 82.7 1.9 6.6E-05 31.0 4.9 53 25-83 62-114 (195)
55 3jvd_A Transcriptional regulat 82.6 14 0.00049 28.2 12.7 148 14-181 77-241 (333)
56 3mmz_A Putative HAD family hyd 82.5 2.5 8.4E-05 29.6 5.3 54 23-83 47-100 (176)
57 3kjx_A Transcriptional regulat 82.3 15 0.00051 28.2 12.0 154 15-181 82-257 (344)
58 3mn1_A Probable YRBI family ph 82.1 2 6.8E-05 30.5 4.7 55 23-83 54-108 (189)
59 3tnj_A Universal stress protei 82.0 7.1 0.00024 25.9 7.4 71 18-88 71-145 (150)
60 3idf_A USP-like protein; unive 82.0 4.7 0.00016 26.4 6.3 45 16-62 64-110 (138)
61 3bbl_A Regulatory protein of L 81.9 14 0.00047 27.5 11.6 152 15-180 22-197 (287)
62 3fvv_A Uncharacterized protein 81.7 4.8 0.00016 28.8 6.8 45 135-179 94-138 (232)
63 3o74_A Fructose transport syst 81.0 14 0.00047 27.0 14.8 156 14-180 15-189 (272)
64 2p9j_A Hypothetical protein AQ 80.3 11 0.00037 25.4 7.9 57 22-84 43-99 (162)
65 3loq_A Universal stress protei 80.1 16 0.00056 27.3 9.6 72 18-89 214-289 (294)
66 3qk7_A Transcriptional regulat 79.5 17 0.00058 27.1 15.3 156 12-180 21-196 (294)
67 1tq8_A Hypothetical protein RV 78.9 6.6 0.00023 26.9 6.5 109 53-179 16-127 (163)
68 3dbi_A Sugar-binding transcrip 78.8 19 0.00067 27.4 14.5 156 14-181 76-252 (338)
69 2pr7_A Haloacid dehalogenase/e 77.7 4.7 0.00016 26.1 5.2 67 16-83 19-89 (137)
70 1mjh_A Protein (ATP-binding do 77.2 8.2 0.00028 26.0 6.5 45 135-179 82-128 (162)
71 3e8m_A Acylneuraminate cytidyl 76.4 3.9 0.00013 27.8 4.6 63 24-92 40-105 (164)
72 3g1w_A Sugar ABC transporter; 76.2 22 0.00074 26.5 12.7 157 14-180 17-196 (305)
73 3kws_A Putative sugar isomeras 76.0 5.1 0.00018 30.1 5.6 50 132-181 142-199 (287)
74 2qul_A D-tagatose 3-epimerase; 76.0 7.6 0.00026 29.0 6.5 50 132-181 129-186 (290)
75 2z08_A Universal stress protei 75.9 6.8 0.00023 25.6 5.6 55 33-87 79-135 (137)
76 3l6u_A ABC-type sugar transpor 75.9 21 0.00073 26.3 12.9 162 14-181 21-205 (293)
77 2nyt_A Probable C->U-editing e 75.9 19 0.00066 25.8 9.4 56 31-87 84-144 (190)
78 4eze_A Haloacid dehalogenase-l 75.6 14 0.00049 28.5 8.1 43 19-61 183-225 (317)
79 3kzx_A HAD-superfamily hydrola 75.2 9.3 0.00032 27.1 6.6 63 20-83 108-174 (231)
80 3e3m_A Transcriptional regulat 75.1 26 0.00089 26.9 14.1 155 14-181 83-260 (355)
81 3s3t_A Nucleotide-binding prot 74.9 7.8 0.00027 25.5 5.7 46 134-179 67-116 (146)
82 3iht_A S-adenosyl-L-methionine 74.8 10 0.00035 26.6 6.2 44 37-80 88-131 (174)
83 1q77_A Hypothetical protein AQ 74.5 6.5 0.00022 25.7 5.2 62 18-87 72-136 (138)
84 3k9c_A Transcriptional regulat 74.1 24 0.00083 26.1 12.8 152 14-181 24-195 (289)
85 3n28_A Phosphoserine phosphata 74.1 17 0.00058 27.9 8.3 73 19-91 182-270 (335)
86 3l8h_A Putative haloacid dehal 74.0 8 0.00027 26.5 5.8 26 17-42 29-54 (179)
87 3hgm_A Universal stress protei 73.7 12 0.00042 24.5 6.6 47 133-179 67-118 (147)
88 3dlo_A Universal stress protei 73.3 7.8 0.00027 26.2 5.5 46 134-179 76-125 (155)
89 2o20_A Catabolite control prot 73.2 28 0.00095 26.4 14.3 153 14-181 76-249 (332)
90 3fdx_A Putative filament prote 73.2 13 0.00045 24.2 6.6 47 133-179 63-114 (143)
91 3miz_A Putative transcriptiona 73.0 8.7 0.0003 28.8 6.2 149 18-181 31-207 (301)
92 3hs3_A Ribose operon repressor 72.9 11 0.00038 27.9 6.7 149 13-180 22-187 (277)
93 2fep_A Catabolite control prot 72.7 26 0.0009 25.9 12.8 153 14-180 29-204 (289)
94 3m1y_A Phosphoserine phosphata 72.6 18 0.00063 25.1 7.6 42 19-60 79-120 (217)
95 3cs3_A Sugar-binding transcrip 72.4 26 0.00088 25.7 9.2 150 14-181 21-187 (277)
96 3mn1_A Probable YRBI family ph 71.7 5.5 0.00019 28.1 4.5 38 141-178 54-91 (189)
97 4gxt_A A conserved functionall 71.6 3.5 0.00012 33.1 3.8 46 16-61 222-273 (385)
98 3tb6_A Arabinose metabolism tr 71.6 28 0.00094 25.6 12.4 158 15-181 29-211 (298)
99 3p96_A Phosphoserine phosphata 71.5 14 0.00049 29.4 7.4 66 19-84 260-338 (415)
100 3sd7_A Putative phosphatase; s 71.5 15 0.00051 26.2 7.0 63 20-83 115-181 (240)
101 3h5o_A Transcriptional regulat 71.1 32 0.0011 26.2 12.6 154 15-181 76-249 (339)
102 3l23_A Sugar phosphate isomera 70.8 7.6 0.00026 29.6 5.5 113 41-154 30-164 (303)
103 3clk_A Transcription regulator 70.6 29 0.001 25.6 10.0 153 15-181 22-195 (290)
104 3n07_A 3-deoxy-D-manno-octulos 70.3 6.1 0.00021 28.3 4.5 36 143-178 62-97 (195)
105 3e58_A Putative beta-phosphogl 70.2 22 0.00076 24.3 7.6 64 19-83 93-160 (214)
106 3gbv_A Putative LACI-family tr 70.0 30 0.001 25.5 12.7 164 14-181 22-210 (304)
107 2q02_A Putative cytoplasmic pr 70.0 12 0.00043 27.4 6.4 134 41-181 20-171 (272)
108 3ij5_A 3-deoxy-D-manno-octulos 69.8 5.8 0.0002 28.8 4.4 38 141-178 84-121 (211)
109 3g85_A Transcriptional regulat 69.6 18 0.00061 26.7 7.3 154 14-181 25-198 (289)
110 3mc1_A Predicted phosphatase, 69.3 17 0.00058 25.5 6.8 65 19-84 90-158 (226)
111 2hsg_A Glucose-resistance amyl 69.3 34 0.0012 25.8 11.2 154 15-181 74-249 (332)
112 3nvb_A Uncharacterized protein 69.1 23 0.00078 28.5 8.0 63 15-83 256-326 (387)
113 3olq_A Universal stress protei 69.0 34 0.0012 25.7 10.8 77 15-91 225-306 (319)
114 3m9l_A Hydrolase, haloacid deh 68.7 14 0.00047 25.7 6.2 63 20-84 75-143 (205)
115 3mmz_A Putative HAD family hyd 68.5 8.4 0.00029 26.7 4.9 37 141-178 47-83 (176)
116 1k1e_A Deoxy-D-mannose-octulos 68.1 7.4 0.00025 27.1 4.5 55 23-83 43-97 (180)
117 3fg9_A Protein of universal st 68.0 14 0.00046 24.7 5.8 46 134-179 77-127 (156)
118 1vp8_A Hypothetical protein AF 67.7 13 0.00044 26.9 5.6 68 18-87 30-103 (201)
119 2iel_A Hypothetical protein TT 67.4 26 0.0009 23.8 7.0 68 19-88 59-133 (138)
120 2l82_A Designed protein OR32; 67.3 17 0.00058 23.7 5.6 55 33-90 3-60 (162)
121 3ib6_A Uncharacterized protein 67.1 16 0.00056 25.3 6.3 67 17-83 36-112 (189)
122 2fvy_A D-galactose-binding per 67.0 36 0.0012 25.2 13.0 163 14-181 15-213 (309)
123 2gm3_A Unknown protein; AT3G01 66.9 18 0.0006 24.7 6.3 44 136-179 87-132 (175)
124 3c3k_A Alanine racemase; struc 66.9 35 0.0012 25.1 12.8 153 14-181 21-194 (285)
125 2dum_A Hypothetical protein PH 66.9 12 0.00041 25.4 5.4 45 135-179 77-125 (170)
126 3n1u_A Hydrolase, HAD superfam 66.8 7 0.00024 27.6 4.2 37 25-61 56-92 (191)
127 3rfu_A Copper efflux ATPase; a 66.6 12 0.00041 32.7 6.3 39 23-61 562-600 (736)
128 2pib_A Phosphorylated carbohyd 66.5 19 0.00066 24.7 6.6 63 20-83 89-155 (216)
129 3mt0_A Uncharacterized protein 66.1 14 0.00049 27.6 6.1 69 20-88 201-274 (290)
130 3cqj_A L-ribulose-5-phosphate 66.0 39 0.0013 25.2 10.1 140 41-181 31-197 (295)
131 3ab8_A Putative uncharacterize 65.8 36 0.0012 24.8 14.1 153 17-177 73-240 (268)
132 3s6j_A Hydrolase, haloacid deh 65.8 19 0.00064 25.3 6.5 64 20-84 96-163 (233)
133 3rot_A ABC sugar transporter, 65.8 38 0.0013 25.1 14.6 155 14-180 16-197 (297)
134 3d8u_A PURR transcriptional re 65.7 36 0.0012 24.7 10.7 154 14-180 16-190 (275)
135 3e8m_A Acylneuraminate cytidyl 65.6 9.2 0.00032 25.8 4.6 38 141-178 39-76 (164)
136 2no4_A (S)-2-haloacid dehaloge 65.5 24 0.00081 25.1 7.0 63 20-83 110-176 (240)
137 1k1e_A Deoxy-D-mannose-octulos 65.4 10 0.00034 26.3 4.8 37 141-177 43-79 (180)
138 3n1u_A Hydrolase, HAD superfam 65.1 9 0.00031 27.0 4.5 36 143-178 56-91 (191)
139 3v7e_A Ribosome-associated pro 64.8 15 0.00052 22.3 5.0 44 44-90 18-61 (82)
140 2wm8_A MDP-1, magnesium-depend 64.3 25 0.00084 24.3 6.7 63 19-83 72-135 (187)
141 2p9j_A Hypothetical protein AQ 63.8 15 0.00053 24.6 5.4 38 140-177 43-80 (162)
142 2r8e_A 3-deoxy-D-manno-octulos 63.7 8.4 0.00029 27.0 4.1 63 23-91 61-126 (188)
143 3um9_A Haloacid dehalogenase, 63.7 33 0.0011 23.9 7.4 64 20-84 101-168 (230)
144 3m9w_A D-xylose-binding peripl 63.7 43 0.0015 24.9 10.8 159 15-181 16-198 (313)
145 2nyv_A Pgpase, PGP, phosphogly 63.5 16 0.00055 25.9 5.7 34 21-54 89-122 (222)
146 3rjz_A N-type ATP pyrophosphat 63.4 25 0.00086 26.2 6.8 63 21-86 53-120 (237)
147 4ex6_A ALNB; modified rossman 63.0 16 0.00055 25.8 5.7 63 20-83 109-175 (237)
148 3u80_A 3-dehydroquinate dehydr 62.7 35 0.0012 23.6 8.1 82 19-101 30-118 (151)
149 4gxt_A A conserved functionall 62.7 11 0.00036 30.3 4.9 46 134-179 222-273 (385)
150 2r8e_A 3-deoxy-D-manno-octulos 62.5 11 0.00037 26.4 4.5 38 141-178 61-98 (188)
151 1zrn_A L-2-haloacid dehalogena 62.1 30 0.001 24.3 7.0 63 20-83 100-166 (232)
152 3lmz_A Putative sugar isomeras 61.4 12 0.00041 27.5 4.8 48 41-88 31-80 (257)
153 3aam_A Endonuclease IV, endoiv 61.3 33 0.0011 25.1 7.3 39 132-170 115-162 (270)
154 3gkn_A Bacterioferritin comigr 61.3 21 0.00071 23.9 5.7 46 15-60 53-98 (163)
155 3gkn_A Bacterioferritin comigr 61.1 23 0.00077 23.7 5.9 40 135-174 55-94 (163)
156 3umb_A Dehalogenase-like hydro 61.1 34 0.0012 23.9 7.1 64 19-83 103-170 (233)
157 3twe_A Alpha4H; unknown functi 60.8 7.1 0.00024 17.9 2.0 16 15-30 5-20 (27)
158 3gyb_A Transcriptional regulat 60.7 46 0.0016 24.2 10.0 149 14-180 18-185 (280)
159 3idf_A USP-like protein; unive 60.4 30 0.001 22.3 6.2 44 134-179 64-109 (138)
160 2rgy_A Transcriptional regulat 60.3 48 0.0017 24.4 13.7 153 14-181 21-199 (290)
161 2hi0_A Putative phosphoglycola 60.2 31 0.0011 24.6 6.9 13 27-39 122-134 (240)
162 2hsz_A Novel predicted phospha 60.1 28 0.00095 25.0 6.6 29 25-53 124-152 (243)
163 1l7m_A Phosphoserine phosphata 59.7 39 0.0013 23.1 7.3 39 20-58 81-119 (211)
164 3kke_A LACI family transcripti 59.6 51 0.0018 24.5 13.4 155 14-181 28-207 (303)
165 2qu7_A Putative transcriptiona 59.5 49 0.0017 24.2 8.4 151 14-181 20-197 (288)
166 4eze_A Haloacid dehalogenase-l 58.5 18 0.0006 28.0 5.4 43 137-179 183-225 (317)
167 1nf2_A Phosphatase; structural 58.3 51 0.0018 24.2 7.9 74 19-94 24-111 (268)
168 3cny_A Inositol catabolism pro 57.5 43 0.0015 24.8 7.4 50 131-180 136-190 (301)
169 3qxb_A Putative xylose isomera 57.4 59 0.002 24.5 10.9 154 28-181 20-214 (316)
170 3i8o_A KH domain-containing pr 57.4 43 0.0015 22.8 7.9 66 12-88 52-130 (142)
171 4exb_A Putative uncharacterize 57.4 60 0.0021 24.6 11.5 123 20-146 136-290 (292)
172 3cnh_A Hydrolase family protei 57.3 37 0.0013 23.2 6.6 36 18-54 89-124 (200)
173 1jmv_A USPA, universal stress 57.2 31 0.0011 22.3 5.9 34 146-179 74-110 (141)
174 4eek_A Beta-phosphoglucomutase 57.2 24 0.00081 25.5 5.8 65 20-84 115-184 (259)
175 2o2x_A Hypothetical protein; s 57.1 23 0.0008 25.1 5.6 37 18-54 59-110 (218)
176 3j08_A COPA, copper-exporting 56.7 16 0.00054 31.4 5.2 42 21-62 463-504 (645)
177 1sur_A PAPS reductase; assimil 56.4 51 0.0018 23.5 9.6 70 18-89 31-104 (215)
178 3ixr_A Bacterioferritin comigr 56.3 22 0.00076 24.5 5.2 45 16-60 70-114 (179)
179 4fe3_A Cytosolic 5'-nucleotida 56.3 16 0.00054 27.6 4.8 36 20-55 146-181 (297)
180 3ixr_A Bacterioferritin comigr 56.1 23 0.00078 24.5 5.3 39 135-173 71-109 (179)
181 1uqr_A 3-dehydroquinate dehydr 56.1 47 0.0016 23.0 9.6 76 23-102 35-113 (154)
182 3tnj_A Universal stress protei 56.0 39 0.0013 22.0 6.9 29 151-179 89-117 (150)
183 3j09_A COPA, copper-exporting 55.7 12 0.00041 32.6 4.4 41 22-62 542-582 (723)
184 1z9b_A Translation initiation 55.7 41 0.0014 22.7 6.1 66 17-89 51-122 (135)
185 3nkl_A UDP-D-quinovosamine 4-d 55.6 35 0.0012 22.3 6.0 47 42-90 54-100 (141)
186 1iv0_A Hypothetical protein; r 55.3 28 0.00095 22.0 5.1 59 32-90 26-93 (98)
187 2ah5_A COG0546: predicted phos 54.2 52 0.0018 22.9 7.5 21 31-51 99-119 (210)
188 1a76_A Flap endonuclease-1 pro 54.1 19 0.00067 27.9 5.0 44 19-63 131-174 (326)
189 3p96_A Phosphoserine phosphata 53.9 23 0.00078 28.2 5.5 43 137-179 260-302 (415)
190 2z08_A Universal stress protei 53.9 41 0.0014 21.6 6.1 29 151-179 79-107 (137)
191 1tp9_A Peroxiredoxin, PRX D (t 53.7 30 0.001 23.3 5.5 37 136-172 57-94 (162)
192 2hoq_A Putative HAD-hydrolase 53.7 53 0.0018 23.2 7.2 65 19-84 98-166 (241)
193 4dgh_A Sulfate permease family 53.6 21 0.00072 23.3 4.5 22 17-38 67-88 (130)
194 4fe3_A Cytosolic 5'-nucleotida 53.4 19 0.00064 27.2 4.8 43 137-179 145-191 (297)
195 3u0h_A Xylose isomerase domain 53.4 63 0.0021 23.6 9.1 51 131-181 117-180 (281)
196 1gqo_A Dehydroquinase; dehydra 53.3 51 0.0017 22.5 9.4 76 23-102 34-112 (143)
197 3tva_A Xylose isomerase domain 53.1 66 0.0023 23.7 11.3 142 40-181 21-185 (290)
198 3kip_A 3-dehydroquinase, type 52.9 56 0.0019 22.9 8.7 71 28-102 55-129 (167)
199 2iks_A DNA-binding transcripti 52.9 65 0.0022 23.6 10.5 154 14-181 33-207 (293)
200 2wfc_A Peroxiredoxin 5, PRDX5; 52.9 30 0.001 23.7 5.5 38 136-173 53-91 (167)
201 2om6_A Probable phosphoserine 52.9 54 0.0019 22.7 7.8 65 19-84 103-174 (235)
202 3kbb_A Phosphorylated carbohyd 52.8 30 0.001 24.0 5.6 36 20-55 89-124 (216)
203 3skx_A Copper-exporting P-type 52.7 27 0.00093 25.4 5.5 42 19-60 148-189 (280)
204 2ioy_A Periplasmic sugar-bindi 52.6 65 0.0022 23.5 12.8 159 14-180 14-192 (283)
205 3jy6_A Transcriptional regulat 52.6 64 0.0022 23.4 10.1 72 13-91 19-94 (276)
206 2lnd_A De novo designed protei 52.2 38 0.0013 20.7 6.4 63 18-83 38-104 (112)
207 3j08_A COPA, copper-exporting 52.2 24 0.00081 30.3 5.6 43 137-179 461-503 (645)
208 1h05_A 3-dehydroquinate dehydr 52.1 54 0.0019 22.5 8.9 76 23-102 36-114 (146)
209 3skx_A Copper-exporting P-type 51.8 32 0.0011 25.0 5.7 41 138-178 149-189 (280)
210 3lmz_A Putative sugar isomeras 51.6 66 0.0023 23.3 8.2 65 17-86 60-130 (257)
211 1k77_A EC1530, hypothetical pr 51.4 66 0.0022 23.2 9.0 50 132-181 120-179 (260)
212 1a76_A Flap endonuclease-1 pro 50.7 23 0.00077 27.6 4.9 42 136-177 130-171 (326)
213 3m1y_A Phosphoserine phosphata 50.7 25 0.00086 24.4 4.9 41 138-178 80-120 (217)
214 3dx5_A Uncharacterized protein 50.4 72 0.0025 23.4 10.2 51 131-181 118-173 (286)
215 3a1c_A Probable copper-exporti 50.2 31 0.0011 25.8 5.5 40 21-60 169-208 (287)
216 3q8k_A Flap endonuclease 1; he 50.0 23 0.0008 27.8 4.9 43 135-177 134-176 (341)
217 3a1c_A Probable copper-exporti 50.0 32 0.0011 25.7 5.6 39 140-178 170-208 (287)
218 1tp9_A Peroxiredoxin, PRX D (t 49.9 34 0.0012 23.0 5.3 38 17-54 56-94 (162)
219 2rjo_A Twin-arginine transloca 49.9 80 0.0027 23.7 12.4 160 14-181 18-207 (332)
220 1ul1_X Flap endonuclease-1; pr 49.7 20 0.00069 28.6 4.5 40 20-59 137-176 (379)
221 2ioj_A Hypothetical protein AF 49.2 54 0.0018 21.7 6.1 53 32-89 53-105 (139)
222 3kd3_A Phosphoserine phosphohy 49.0 32 0.0011 23.6 5.2 35 20-54 87-121 (219)
223 3q8k_A Flap endonuclease 1; he 49.0 23 0.00078 27.9 4.6 45 17-62 134-178 (341)
224 2pq0_A Hypothetical conserved 48.9 72 0.0025 23.0 8.0 68 25-92 30-108 (258)
225 3rfu_A Copper efflux ATPase; a 48.9 16 0.00053 32.0 4.0 40 140-179 561-600 (736)
226 3mng_A Peroxiredoxin-5, mitoch 48.7 36 0.0012 23.6 5.3 37 137-173 66-103 (173)
227 1l6r_A Hypothetical protein TA 48.6 39 0.0013 24.3 5.7 32 25-56 32-63 (227)
228 1t57_A Conserved protein MTH16 48.5 16 0.00054 26.6 3.3 67 18-87 38-110 (206)
229 2i6x_A Hydrolase, haloacid deh 48.4 50 0.0017 22.7 6.1 32 19-51 93-124 (211)
230 4f82_A Thioredoxin reductase; 48.1 51 0.0017 23.2 6.0 37 137-173 70-107 (176)
231 3n8k_A 3-dehydroquinate dehydr 48.1 70 0.0024 22.5 8.2 75 24-102 63-140 (172)
232 1ul1_X Flap endonuclease-1; pr 48.0 23 0.00078 28.3 4.6 41 137-177 136-176 (379)
233 1b43_A Protein (FEN-1); nuclea 47.6 29 0.001 27.1 5.1 44 135-178 129-172 (340)
234 2hcf_A Hydrolase, haloacid deh 47.6 68 0.0023 22.3 7.3 36 20-55 98-134 (234)
235 3drn_A Peroxiredoxin, bacterio 47.5 36 0.0012 22.7 5.1 41 134-174 48-88 (161)
236 2yj3_A Copper-transporting ATP 53.2 3.9 0.00013 30.6 0.0 46 16-61 137-182 (263)
237 1te2_A Putative phosphatase; s 47.4 65 0.0022 22.0 7.2 62 21-83 100-165 (226)
238 2wfc_A Peroxiredoxin 5, PRDX5; 47.4 39 0.0013 23.1 5.3 39 17-55 52-91 (167)
239 3drn_A Peroxiredoxin, bacterio 47.3 35 0.0012 22.8 5.0 44 16-59 48-91 (161)
240 1q77_A Hypothetical protein AQ 47.3 40 0.0014 21.6 5.2 43 136-179 72-117 (138)
241 3bil_A Probable LACI-family tr 46.7 94 0.0032 23.7 15.5 156 14-180 79-250 (348)
242 3uma_A Hypothetical peroxiredo 46.6 37 0.0013 23.8 5.1 38 136-173 78-116 (184)
243 1jye_A Lactose operon represso 46.6 94 0.0032 23.6 14.3 155 14-181 74-248 (349)
244 3j09_A COPA, copper-exporting 46.5 32 0.0011 29.9 5.6 43 138-180 540-582 (723)
245 2gmw_A D,D-heptose 1,7-bisphos 46.5 55 0.0019 23.0 6.2 25 18-42 53-77 (211)
246 3tva_A Xylose isomerase domain 46.2 86 0.0029 23.1 9.0 71 17-87 50-157 (290)
247 3ngf_A AP endonuclease, family 46.2 84 0.0029 22.9 10.5 137 41-181 24-186 (269)
248 2a4v_A Peroxiredoxin DOT5; yea 46.0 44 0.0015 22.2 5.4 39 135-174 55-93 (159)
249 2zg6_A Putative uncharacterize 45.9 41 0.0014 23.6 5.4 65 19-85 99-167 (220)
250 3p6l_A Sugar phosphate isomera 45.9 78 0.0027 22.9 7.1 123 40-180 22-164 (262)
251 3mng_A Peroxiredoxin-5, mitoch 45.8 39 0.0013 23.4 5.1 38 18-55 65-103 (173)
252 3ory_A Flap endonuclease 1; hy 45.8 29 0.001 27.5 4.9 41 137-177 145-185 (363)
253 1b43_A Protein (FEN-1); nuclea 45.7 30 0.001 27.0 4.9 42 18-59 130-171 (340)
254 2wem_A Glutaredoxin-related pr 45.3 38 0.0013 22.0 4.7 44 39-88 7-56 (118)
255 3ory_A Flap endonuclease 1; hy 45.3 28 0.00095 27.7 4.6 43 20-63 146-188 (363)
256 1dbq_A Purine repressor; trans 45.1 86 0.0029 22.8 12.2 156 14-180 20-196 (289)
257 1nnl_A L-3-phosphoserine phosp 45.1 39 0.0013 23.7 5.2 10 75-84 117-126 (225)
258 1exn_A 5'-exonuclease, 5'-nucl 45.1 37 0.0013 26.1 5.2 124 14-148 97-236 (290)
259 2fi1_A Hydrolase, haloacid deh 45.1 67 0.0023 21.5 6.3 18 23-40 90-107 (190)
260 4as2_A Phosphorylcholine phosp 45.0 19 0.00063 28.2 3.5 45 17-61 145-195 (327)
261 2dri_A D-ribose-binding protei 44.9 86 0.0029 22.7 12.8 162 14-181 14-192 (271)
262 3l8h_A Putative haloacid dehal 44.9 59 0.002 21.9 5.9 38 140-177 34-88 (179)
263 2oda_A Hypothetical protein ps 44.7 48 0.0016 23.3 5.5 65 17-83 38-102 (196)
264 3brq_A HTH-type transcriptiona 44.6 88 0.003 22.7 13.5 155 14-181 34-210 (296)
265 1yns_A E-1 enzyme; hydrolase f 44.5 77 0.0026 23.2 6.9 10 40-49 134-143 (261)
266 3dnp_A Stress response protein 44.5 91 0.0031 22.8 9.1 70 25-94 33-115 (290)
267 2izo_A FEN1, flap structure-sp 44.3 32 0.0011 27.0 4.9 42 136-177 127-168 (346)
268 3ewi_A N-acylneuraminate cytid 43.8 19 0.00066 25.0 3.2 51 25-84 46-98 (168)
269 1gtz_A 3-dehydroquinate dehydr 43.5 79 0.0027 21.9 9.1 77 22-102 39-119 (156)
270 2izo_A FEN1, flap structure-sp 43.5 31 0.0011 27.1 4.6 45 18-63 127-171 (346)
271 2a4v_A Peroxiredoxin DOT5; yea 43.3 51 0.0017 21.9 5.3 41 16-57 54-94 (159)
272 1mzw_B U4/U6 snRNP 60KDA prote 43.1 16 0.00054 18.1 1.8 28 141-168 2-29 (31)
273 2yj3_A Copper-transporting ATP 49.1 5.1 0.00017 30.0 0.0 42 137-178 140-181 (263)
274 2pr7_A Haloacid dehalogenase/e 43.1 9.5 0.00033 24.5 1.4 22 140-161 25-46 (137)
275 1h4x_A SPOIIAA, anti-sigma F f 42.9 41 0.0014 21.1 4.5 39 18-58 61-99 (117)
276 3uma_A Hypothetical peroxiredo 42.9 43 0.0015 23.4 5.0 39 17-55 77-116 (184)
277 3igz_B Cofactor-independent ph 42.8 1.2E+02 0.0041 25.7 8.2 76 18-93 108-204 (561)
278 1nnl_A L-3-phosphoserine phosp 42.7 43 0.0015 23.5 5.1 40 138-177 91-132 (225)
279 3mpo_A Predicted hydrolase of 42.3 96 0.0033 22.5 9.8 70 25-94 32-117 (279)
280 1nm3_A Protein HI0572; hybrid, 42.2 62 0.0021 23.3 6.0 38 136-173 55-93 (241)
281 3p6l_A Sugar phosphate isomera 41.9 96 0.0033 22.4 8.5 64 18-86 63-132 (262)
282 2uyg_A 3-dehydroquinate dehydr 41.9 83 0.0028 21.6 9.7 76 23-102 33-112 (149)
283 2wm8_A MDP-1, magnesium-depend 41.8 30 0.001 23.8 4.0 34 143-176 78-112 (187)
284 1rkq_A Hypothetical protein YI 41.7 1E+02 0.0035 22.7 7.4 67 26-92 33-116 (282)
285 2x7x_A Sensor protein; transfe 41.6 1.1E+02 0.0037 22.9 15.3 160 14-181 18-198 (325)
286 1sbo_A Putative anti-sigma fac 41.5 31 0.0011 21.3 3.7 15 22-36 67-81 (110)
287 4hyl_A Stage II sporulation pr 41.5 33 0.0011 21.6 3.9 40 17-58 60-99 (117)
288 3raz_A Thioredoxin-related pro 41.4 37 0.0013 22.2 4.3 44 16-59 42-85 (151)
289 3kd3_A Phosphoserine phosphohy 41.3 42 0.0014 22.9 4.8 40 138-177 87-128 (219)
290 1l6r_A Hypothetical protein TA 41.1 71 0.0024 22.9 6.1 32 143-174 32-63 (227)
291 4f82_A Thioredoxin reductase; 41.0 70 0.0024 22.4 5.8 39 17-55 68-107 (176)
292 3d6j_A Putative haloacid dehal 41.0 84 0.0029 21.4 6.7 33 22-54 96-128 (225)
293 1o98_A 2,3-bisphosphoglycerate 41.0 82 0.0028 26.3 6.9 75 18-92 95-186 (511)
294 3fzq_A Putative hydrolase; YP_ 40.6 77 0.0026 22.9 6.3 70 25-94 32-112 (274)
295 2goy_A Adenosine phosphosulfat 40.4 91 0.0031 23.3 6.7 69 19-89 42-113 (275)
296 3ocu_A Lipoprotein E; hydrolas 39.9 60 0.002 24.5 5.6 75 19-98 105-188 (262)
297 3aal_A Probable endonuclease 4 39.6 86 0.0029 23.4 6.6 12 160-171 162-173 (303)
298 3ujp_A Mn transporter subunit; 39.5 1.3E+02 0.0043 23.1 9.0 71 14-89 166-246 (307)
299 2ka5_A Putative anti-sigma fac 39.4 29 0.00098 22.5 3.4 37 18-56 71-107 (125)
300 1nrw_A Hypothetical protein, h 39.4 1.1E+02 0.0039 22.5 9.5 70 25-94 31-113 (288)
301 1rxw_A Flap structure-specific 39.3 51 0.0018 25.6 5.3 41 137-177 130-170 (336)
302 4dgf_A Sulfate transporter sul 39.2 41 0.0014 22.1 4.2 37 17-55 70-106 (135)
303 3ib6_A Uncharacterized protein 38.7 41 0.0014 23.2 4.3 35 139-173 40-77 (189)
304 2do5_A Splicing factor 3B subu 38.5 8.7 0.0003 21.2 0.5 15 139-153 14-28 (58)
305 3iru_A Phoshonoacetaldehyde hy 38.3 49 0.0017 23.8 4.9 62 21-83 117-183 (277)
306 3brs_A Periplasmic binding pro 38.2 1.1E+02 0.0038 22.1 10.1 160 14-181 20-200 (289)
307 1nm3_A Protein HI0572; hybrid, 38.1 73 0.0025 22.9 5.8 39 17-55 54-93 (241)
308 8abp_A L-arabinose-binding pro 38.0 1.2E+02 0.004 22.2 9.6 73 14-91 15-91 (306)
309 2qlt_A (DL)-glycerol-3-phospha 37.9 64 0.0022 23.6 5.5 29 25-53 124-153 (275)
310 3qe9_Y Exonuclease 1; exonucle 37.8 59 0.002 25.6 5.4 42 136-177 128-169 (352)
311 1n8j_A AHPC, alkyl hydroperoxi 37.6 63 0.0021 22.3 5.2 35 136-170 51-85 (186)
312 1l7m_A Phosphoserine phosphata 37.5 55 0.0019 22.2 4.9 40 139-178 82-121 (211)
313 2o8v_A Phosphoadenosine phosph 37.4 1.2E+02 0.0041 22.3 9.0 69 19-89 33-105 (252)
314 3qe9_Y Exonuclease 1; exonucle 37.2 47 0.0016 26.2 4.8 40 20-59 130-169 (352)
315 4dw8_A Haloacid dehalogenase-l 37.1 1.2E+02 0.004 22.0 9.6 71 25-95 32-119 (279)
316 3nuq_A Protein SSM1, putative 37.1 90 0.0031 22.7 6.3 36 19-54 146-183 (282)
317 2pwj_A Mitochondrial peroxired 37.0 67 0.0023 21.9 5.2 37 136-172 65-102 (171)
318 3qc0_A Sugar isomerase; TIM ba 36.6 86 0.003 22.7 6.1 46 17-62 44-105 (275)
319 3gi1_A LBP, laminin-binding pr 36.6 1.4E+02 0.0046 22.6 8.8 71 14-89 157-235 (286)
320 3zyw_A Glutaredoxin-3; metal b 36.5 61 0.0021 20.5 4.6 38 43-86 7-49 (111)
321 3pct_A Class C acid phosphatas 36.5 1E+02 0.0034 23.2 6.3 75 19-98 105-188 (260)
322 3cis_A Uncharacterized protein 36.4 46 0.0016 24.9 4.6 56 32-89 248-305 (309)
323 3qnm_A Haloacid dehalogenase-l 36.2 1.1E+02 0.0036 21.2 8.2 61 21-83 113-177 (240)
324 1toa_A Tromp-1, protein (perip 36.1 1.4E+02 0.005 22.8 8.4 71 14-89 173-253 (313)
325 1pq4_A Periplasmic binding pro 35.8 86 0.0029 23.7 6.0 43 136-178 224-267 (291)
326 4as2_A Phosphorylcholine phosp 35.5 44 0.0015 26.0 4.4 44 134-177 144-193 (327)
327 1th8_B Anti-sigma F factor ant 35.3 37 0.0013 21.2 3.4 17 20-36 64-80 (116)
328 3cis_A Uncharacterized protein 35.2 1.4E+02 0.0047 22.2 12.2 73 17-91 81-162 (309)
329 3llo_A Prestin; STAS domain, c 35.2 58 0.002 21.4 4.5 36 18-55 83-118 (143)
330 1exn_A 5'-exonuclease, 5'-nucl 35.1 73 0.0025 24.4 5.4 51 131-181 96-153 (290)
331 1rxw_A Flap structure-specific 35.1 61 0.0021 25.2 5.1 44 19-63 130-173 (336)
332 2iel_A Hypothetical protein TT 35.0 1E+02 0.0036 20.8 5.6 45 135-179 57-106 (138)
333 3dv9_A Beta-phosphoglucomutase 34.9 38 0.0013 23.9 3.7 62 20-83 113-180 (247)
334 1yx1_A Hypothetical protein PA 34.9 1.3E+02 0.0044 21.8 7.5 15 20-34 53-67 (264)
335 2c4w_A 3-dehydroquinate dehydr 34.9 1.2E+02 0.0041 21.4 9.2 69 29-101 51-123 (176)
336 3iz5_H 60S ribosomal protein L 34.8 89 0.003 23.5 5.6 54 33-90 125-178 (258)
337 3qxg_A Inorganic pyrophosphata 34.7 44 0.0015 23.7 4.1 62 20-83 114-181 (243)
338 1gud_A ALBP, D-allose-binding 34.5 1.3E+02 0.0046 21.9 13.8 159 14-181 14-203 (288)
339 3zy2_A Putative GDP-fucose pro 34.0 54 0.0019 26.0 4.5 74 43-120 269-345 (362)
340 3ab8_A Putative uncharacterize 33.9 56 0.0019 23.8 4.6 8 31-38 182-189 (268)
341 3lwz_A 3-dehydroquinate dehydr 33.9 1.2E+02 0.004 21.0 9.8 73 26-102 44-119 (153)
342 3dao_A Putative phosphatse; st 33.9 1.4E+02 0.0047 21.9 8.4 66 26-94 50-132 (283)
343 2xhf_A Peroxiredoxin 5; oxidor 33.9 78 0.0027 22.0 5.1 36 137-172 64-100 (171)
344 3ngf_A AP endonuclease, family 33.1 1.4E+02 0.0048 21.7 7.0 70 11-81 124-203 (269)
345 2vk2_A YTFQ, ABC transporter p 33.0 1.5E+02 0.005 21.9 15.0 162 14-181 15-201 (306)
346 3kws_A Putative sugar isomeras 32.7 91 0.0031 22.9 5.7 59 9-67 137-203 (287)
347 2fea_A 2-hydroxy-3-keto-5-meth 32.2 58 0.002 23.2 4.4 44 19-62 81-125 (236)
348 2pib_A Phosphorylated carbohyd 32.1 48 0.0016 22.6 3.8 36 138-173 89-124 (216)
349 3m9l_A Hydrolase, haloacid deh 32.1 43 0.0015 23.0 3.5 37 138-174 75-111 (205)
350 3l12_A Putative glycerophospho 32.0 1.4E+02 0.0047 22.7 6.7 54 21-84 258-311 (313)
351 1n8j_A AHPC, alkyl hydroperoxi 32.0 1.1E+02 0.0038 21.0 5.7 37 16-52 49-85 (186)
352 2nyv_A Pgpase, PGP, phosphogly 32.0 1.2E+02 0.0041 21.1 6.0 35 139-173 89-123 (222)
353 3k1z_A Haloacid dehalogenase-l 32.0 1.1E+02 0.0037 22.0 5.9 61 21-83 112-176 (263)
354 1zun_A Sulfate adenylyltransfe 31.7 1.8E+02 0.0061 22.5 9.3 73 15-89 31-110 (325)
355 1xvi_A MPGP, YEDP, putative ma 31.4 56 0.0019 24.1 4.3 30 26-55 37-66 (275)
356 3ixl_A Amdase, arylmalonate de 31.3 1.5E+02 0.0053 21.6 7.3 48 41-91 104-151 (240)
357 4a17_F RPL7A, 60S ribosomal pr 31.2 32 0.0011 25.9 2.7 52 127-178 118-174 (255)
358 2pwj_A Mitochondrial peroxired 31.2 86 0.0029 21.3 4.9 37 18-54 65-102 (171)
359 1ass_A Thermosome; chaperonin, 31.0 1E+02 0.0035 21.1 5.2 39 137-175 60-98 (159)
360 1qpz_A PURA, protein (purine n 30.6 1.7E+02 0.0058 21.9 13.5 157 14-181 71-248 (340)
361 2go7_A Hydrolase, haloacid deh 30.6 1.2E+02 0.0041 20.1 6.1 28 25-53 95-122 (207)
362 2eja_A URO-D, UPD, uroporphyri 30.2 1.3E+02 0.0046 23.0 6.4 53 8-61 206-260 (338)
363 3nvb_A Uncharacterized protein 30.1 1.1E+02 0.0039 24.4 6.0 36 134-169 257-292 (387)
364 1qq5_A Protein (L-2-haloacid d 29.7 1.5E+02 0.0051 21.0 7.5 60 21-83 99-162 (253)
365 2ct6_A SH3 domain-binding glut 29.7 82 0.0028 19.8 4.3 32 57-88 11-44 (111)
366 1n3y_A Integrin alpha-X; alpha 29.7 1.3E+02 0.0045 20.5 5.8 7 49-55 136-142 (198)
367 2fpr_A Histidine biosynthesis 29.6 91 0.0031 21.2 4.9 23 18-40 45-67 (176)
368 2no4_A (S)-2-haloacid dehaloge 29.3 62 0.0021 22.8 4.1 41 140-180 112-156 (240)
369 3ll5_A Gamma-glutamyl kinase r 29.3 1.4E+02 0.0046 22.0 6.0 68 19-88 28-102 (249)
370 1qyi_A ZR25, hypothetical prot 29.2 46 0.0016 26.5 3.6 39 17-55 217-255 (384)
371 3r8s_O 50S ribosomal protein L 29.2 57 0.0019 21.4 3.4 40 45-85 77-116 (116)
372 1ni5_A Putative cell cycle pro 29.0 2.1E+02 0.0073 22.9 7.6 60 31-90 13-81 (433)
373 3kbb_A Phosphorylated carbohyd 29.0 57 0.002 22.5 3.8 37 138-174 89-125 (216)
374 2qul_A D-tagatose 3-epimerase; 28.9 1.4E+02 0.005 21.7 6.2 58 10-67 125-190 (290)
375 3jyw_G 60S ribosomal protein L 28.9 58 0.002 21.2 3.4 44 45-90 33-76 (113)
376 2xzm_U Ribosomal protein L7AE 28.9 1.3E+02 0.0043 19.9 6.5 42 47-90 34-75 (126)
377 3raz_A Thioredoxin-related pro 28.6 68 0.0023 20.9 3.9 38 136-173 44-81 (151)
378 1vlj_A NADH-dependent butanol 28.5 1.9E+02 0.0066 22.9 7.2 76 19-95 30-115 (407)
379 1xiy_A Peroxiredoxin, pfaop; a 28.5 1E+02 0.0035 21.5 5.0 37 137-173 66-104 (182)
380 2wul_A Glutaredoxin related pr 28.4 1E+02 0.0034 20.1 4.6 44 39-88 7-56 (118)
381 2yvq_A Carbamoyl-phosphate syn 28.3 1.3E+02 0.0046 20.0 7.9 22 18-39 37-58 (143)
382 3nas_A Beta-PGM, beta-phosphog 28.3 88 0.003 21.7 4.7 34 19-54 96-129 (233)
383 3kzx_A HAD-superfamily hydrola 28.0 47 0.0016 23.2 3.2 35 138-172 108-142 (231)
384 2hsz_A Novel predicted phospha 28.0 59 0.002 23.2 3.8 34 140-173 121-154 (243)
385 3qxb_A Putative xylose isomera 27.8 1E+02 0.0035 23.1 5.3 56 12-67 152-218 (316)
386 1k77_A EC1530, hypothetical pr 27.7 1.7E+02 0.0057 20.9 7.2 57 11-67 117-183 (260)
387 3t6o_A Sulfate transporter/ant 27.7 48 0.0016 21.2 2.9 19 19-37 68-87 (121)
388 2qh8_A Uncharacterized protein 27.7 1.4E+02 0.0047 22.1 5.9 74 18-95 156-233 (302)
389 2l5o_A Putative thioredoxin; s 27.5 1.1E+02 0.0039 19.5 5.0 40 16-55 46-87 (153)
390 3dxy_A TRNA (guanine-N(7)-)-me 27.4 77 0.0026 22.7 4.3 42 19-60 70-112 (218)
391 2vup_A Glutathione peroxidase- 27.3 1.5E+02 0.0051 20.2 5.8 40 16-55 66-114 (190)
392 1h1j_S THO1 protein; SAP domai 27.1 82 0.0028 17.3 3.3 30 19-51 9-38 (51)
393 2w4l_A DCMP deaminse, deoxycyt 27.0 1.6E+02 0.0056 20.5 7.5 56 30-88 96-152 (178)
394 1gml_A T-complex protein 1 sub 27.0 1.3E+02 0.0043 21.0 5.2 39 137-175 66-104 (178)
395 1mhs_A Proton pump, plasma mem 27.0 2.2E+02 0.0076 25.6 7.8 34 22-55 542-575 (920)
396 1o2d_A Alcohol dehydrogenase, 26.9 1.9E+02 0.0065 22.6 6.8 77 18-95 27-112 (371)
397 4a17_F RPL7A, 60S ribosomal pr 26.9 2E+02 0.0067 21.7 6.3 54 33-90 122-175 (255)
398 1tz9_A Mannonate dehydratase; 26.9 2.2E+02 0.0075 22.0 9.7 51 131-181 193-256 (367)
399 1rku_A Homoserine kinase; phos 26.8 1.2E+02 0.0043 20.5 5.3 11 41-51 74-84 (206)
400 2gfh_A Haloacid dehalogenase-l 26.8 1.5E+02 0.0051 21.4 5.9 63 19-83 125-191 (260)
401 3out_A Glutamate racemase; str 26.7 1.3E+02 0.0043 22.6 5.4 53 6-58 44-99 (268)
402 2vup_A Glutathione peroxidase- 26.6 1.5E+02 0.0053 20.1 5.8 40 134-173 66-114 (190)
403 2lbw_A H/ACA ribonucleoprotein 26.6 1.3E+02 0.0046 19.4 6.0 43 46-90 29-71 (121)
404 1xvw_A Hypothetical protein RV 26.6 42 0.0014 22.1 2.6 38 136-173 57-94 (160)
405 1yx1_A Hypothetical protein PA 26.6 1.8E+02 0.0062 20.9 10.1 18 137-154 113-130 (264)
406 1pq4_A Periplasmic binding pro 26.5 2.1E+02 0.0071 21.6 7.5 40 20-59 226-266 (291)
407 1zrn_A L-2-haloacid dehalogena 26.4 75 0.0026 22.1 4.1 30 143-172 105-134 (232)
408 2xhf_A Peroxiredoxin 5; oxidor 26.4 1.2E+02 0.004 21.0 4.9 37 18-54 63-100 (171)
409 3r3p_A MobIle intron protein; 26.3 45 0.0015 21.3 2.5 34 66-99 56-89 (105)
410 3lor_A Thiol-disulfide isomera 26.3 87 0.003 20.4 4.2 40 134-173 49-95 (160)
411 3eyt_A Uncharacterized protein 26.2 88 0.003 20.3 4.2 39 135-173 48-93 (158)
412 3lkv_A Uncharacterized conserv 26.2 2E+02 0.0069 21.4 6.9 71 20-92 158-230 (302)
413 2ipq_X Hypothetical protein ST 26.1 28 0.00095 23.6 1.5 72 8-84 7-82 (135)
414 1u6t_A SH3 domain-binding glut 26.1 1E+02 0.0035 20.2 4.3 29 61-89 7-37 (121)
415 3ipz_A Monothiol glutaredoxin- 26.1 84 0.0029 19.7 3.9 39 43-87 9-52 (109)
416 2ale_A SNU13, NHP2/L7AE family 26.1 99 0.0034 20.6 4.3 39 139-177 38-81 (134)
417 2o1e_A YCDH; alpha-beta protei 26.0 1.9E+02 0.0065 22.1 6.5 79 10-92 164-249 (312)
418 2ywi_A Hypothetical conserved 25.9 1.6E+02 0.0053 20.0 5.6 40 134-173 64-111 (196)
419 1jdq_A TM006 protein, hypothet 25.9 1.3E+02 0.0043 18.8 6.2 41 20-60 40-84 (98)
420 3lvj_C Sulfurtransferase TUSA; 25.9 1.1E+02 0.0038 18.2 6.0 42 137-178 23-68 (82)
421 2q02_A Putative cytoplasmic pr 25.9 1.9E+02 0.0063 20.8 8.5 70 18-87 51-138 (272)
422 3oiz_A Antisigma-factor antago 25.8 49 0.0017 20.4 2.6 20 18-37 63-82 (99)
423 3on1_A BH2414 protein; structu 25.8 1.2E+02 0.0042 18.8 5.5 40 46-88 27-66 (101)
424 3uhf_A Glutamate racemase; str 25.8 91 0.0031 23.6 4.5 52 6-57 61-114 (274)
425 1ws6_A Methyltransferase; stru 25.7 75 0.0026 21.0 3.8 46 19-64 75-121 (171)
426 1xvl_A Mn transporter, MNTC pr 25.7 2.3E+02 0.0078 21.8 8.9 70 15-89 181-260 (321)
427 3v7q_A Probable ribosomal prot 25.6 1.3E+02 0.0043 18.8 6.2 42 45-89 27-68 (101)
428 1qyi_A ZR25, hypothetical prot 25.5 68 0.0023 25.6 3.9 39 135-173 217-255 (384)
429 3a2k_A TRNA(Ile)-lysidine synt 25.5 1.5E+02 0.0052 24.0 6.1 59 31-89 18-85 (464)
430 3tqi_A GMP synthase [glutamine 25.5 2.5E+02 0.0085 23.3 7.5 77 14-92 215-295 (527)
431 3ndn_A O-succinylhomoserine su 25.5 1.5E+02 0.0052 23.4 6.1 65 26-91 140-205 (414)
432 3lwa_A Secreted thiol-disulfid 25.4 1.6E+02 0.0053 19.8 6.0 40 134-173 77-124 (183)
433 4a5z_A MITD1, MIT domain-conta 25.4 90 0.0031 21.8 4.0 25 15-39 85-109 (163)
434 3u5r_E Uncharacterized protein 25.4 1.1E+02 0.0037 21.7 4.8 40 135-174 78-125 (218)
435 3epr_A Hydrolase, haloacid deh 25.3 1.1E+02 0.0036 22.2 4.8 31 25-55 31-64 (264)
436 2yxb_A Coenzyme B12-dependent 25.3 1.3E+02 0.0045 20.4 5.0 43 18-60 84-128 (161)
437 1rr7_A Middle operon regulator 25.2 1.3E+02 0.0043 19.9 4.7 50 25-78 41-90 (129)
438 1rku_A Homoserine kinase; phos 25.2 1.3E+02 0.0043 20.5 5.0 38 139-177 75-112 (206)
439 1we0_A Alkyl hydroperoxide red 25.1 1.4E+02 0.0049 20.2 5.3 37 134-170 50-86 (187)
440 3umb_A Dehalogenase-like hydro 25.1 70 0.0024 22.2 3.7 36 138-173 104-139 (233)
441 3erp_A Putative oxidoreductase 25.0 40 0.0014 26.3 2.5 41 20-60 138-189 (353)
442 2prs_A High-affinity zinc upta 24.9 2.2E+02 0.0074 21.3 8.4 71 15-90 153-231 (284)
443 3ar4_A Sarcoplasmic/endoplasmi 24.8 3.6E+02 0.012 24.3 8.9 36 20-55 608-643 (995)
444 1ulz_A Pyruvate carboxylase N- 24.7 2.5E+02 0.0085 22.2 7.3 18 22-39 16-33 (451)
445 4f2d_A L-arabinose isomerase; 24.7 2.6E+02 0.0089 23.1 7.4 58 19-76 434-493 (500)
446 3o3m_B Beta subunit 2-hydroxya 24.6 2.1E+02 0.0072 22.5 6.7 69 19-89 277-350 (385)
447 3bfj_A 1,3-propanediol oxidore 24.5 2.5E+02 0.0087 21.9 7.3 75 19-94 20-105 (387)
448 1t1v_A SH3BGRL3, SH3 domain-bi 24.5 93 0.0032 18.6 3.7 30 58-87 6-37 (93)
449 2hdo_A Phosphoglycolate phosph 24.4 1.4E+02 0.0047 20.3 5.1 30 24-54 92-121 (209)
450 3da8_A Probable 5'-phosphoribo 24.4 2E+02 0.0069 20.8 6.0 71 19-90 25-97 (215)
451 1wr8_A Phosphoglycolate phosph 24.3 1.3E+02 0.0043 21.3 5.0 31 25-55 30-60 (231)
452 3sd7_A Putative phosphatase; s 24.3 60 0.0021 22.8 3.2 36 138-173 115-150 (240)
453 1xbi_A 50S ribosomal protein L 24.3 1.4E+02 0.0049 19.3 4.8 43 45-89 37-79 (120)
454 1vsr_A Protein (VSR endonuclea 24.2 60 0.002 21.9 2.9 28 68-95 74-101 (136)
455 1we0_A Alkyl hydroperoxide red 24.2 1.4E+02 0.0048 20.2 5.1 37 16-52 50-86 (187)
456 3uug_A Multiple sugar-binding 24.2 2.2E+02 0.0074 21.0 10.0 72 15-91 17-93 (330)
457 3tr6_A O-methyltransferase; ce 24.2 1.7E+02 0.0058 20.3 5.7 44 19-62 101-149 (225)
458 1xvi_A MPGP, YEDP, putative ma 24.1 1.1E+02 0.0036 22.6 4.6 29 145-173 38-66 (275)
459 2i33_A Acid phosphatase; HAD s 24.0 1.3E+02 0.0043 22.3 5.0 44 19-62 105-156 (258)
460 4a5z_A MITD1, MIT domain-conta 24.0 94 0.0032 21.7 3.9 27 132-158 84-110 (163)
461 4ex6_A ALNB; modified rossman 24.0 57 0.0019 22.8 3.0 36 138-173 109-144 (237)
462 3dx5_A Uncharacterized protein 24.0 2.1E+02 0.0072 20.8 6.7 57 10-66 115-176 (286)
463 3izc_H 60S ribosomal protein R 24.0 30 0.001 26.1 1.4 52 127-178 125-181 (256)
464 3o1i_D Periplasmic protein TOR 23.8 2.1E+02 0.0072 20.7 6.8 72 14-91 18-96 (304)
465 2w70_A Biotin carboxylase; lig 23.7 2.5E+02 0.0085 22.2 7.1 18 22-39 16-33 (449)
466 3cnh_A Hydrolase family protei 23.6 77 0.0026 21.5 3.6 36 137-173 90-125 (200)
467 1vhx_A Putative holliday junct 23.5 1.4E+02 0.0049 20.1 4.8 21 40-60 42-62 (150)
468 3gi1_A LBP, laminin-binding pr 23.5 1.5E+02 0.0052 22.3 5.4 43 136-178 215-258 (286)
469 3n6q_A YGHZ aldo-keto reductas 23.4 55 0.0019 25.4 3.0 40 21-60 118-168 (346)
470 3kij_A Probable glutathione pe 23.4 1.4E+02 0.0049 20.1 4.9 39 135-173 57-104 (180)
471 1qgn_A Protein (cystathionine 23.3 2E+02 0.007 23.0 6.5 66 26-91 173-239 (445)
472 3u5r_E Uncharacterized protein 23.1 1.2E+02 0.004 21.4 4.6 45 15-59 76-128 (218)
473 2fpr_A Histidine biosynthesis 23.0 1.3E+02 0.0045 20.3 4.7 32 142-173 51-97 (176)
474 2inf_A URO-D, UPD, uroporphyri 22.8 1.3E+02 0.0045 23.3 5.1 47 13-60 226-272 (359)
475 2o2x_A Hypothetical protein; s 22.8 1.5E+02 0.0052 20.6 5.1 35 143-177 66-117 (218)
476 3izc_H 60S ribosomal protein R 22.7 1.7E+02 0.0057 22.0 5.3 54 33-90 129-182 (256)
477 3mfq_A TROA, high-affinity zin 22.7 1.2E+02 0.004 22.9 4.6 50 42-94 201-252 (282)
478 2pw9_A Putative formate dehydr 22.6 1.1E+02 0.0036 23.2 4.3 40 141-180 207-246 (268)
479 1prx_A HORF6; peroxiredoxin, h 22.6 1.6E+02 0.0056 21.0 5.3 35 17-51 51-85 (224)
480 2vo9_A EAD500, L-alanyl-D-glut 22.5 99 0.0034 21.7 3.9 35 16-50 37-72 (179)
481 1zrj_A E1B-55KDA-associated pr 22.4 1.1E+02 0.0036 16.8 3.6 31 19-52 14-44 (50)
482 1vbk_A Hypothetical protein PH 22.3 2.6E+02 0.0089 21.3 8.0 51 9-59 15-76 (307)
483 4ap9_A Phosphoserine phosphata 22.3 37 0.0013 23.0 1.6 36 20-56 84-119 (201)
484 1nf2_A Phosphatase; structural 22.2 1.5E+02 0.0052 21.5 5.2 36 137-174 24-59 (268)
485 1nu0_A Hypothetical protein YQ 22.1 1.8E+02 0.0062 19.4 5.8 49 41-89 41-95 (138)
486 1nfp_A LUXF gene product; flav 22.1 1.9E+02 0.0064 20.5 5.5 26 37-62 170-199 (228)
487 3s6j_A Hydrolase, haloacid deh 22.0 1.4E+02 0.0048 20.4 4.8 36 138-173 96-131 (233)
488 2l69_A Rossmann 2X3 fold prote 21.9 1.6E+02 0.0053 18.5 6.4 63 18-84 13-77 (134)
489 3qgm_A P-nitrophenyl phosphata 21.9 2.2E+02 0.0076 20.3 6.9 31 25-55 34-67 (268)
490 2wf7_A Beta-PGM, beta-phosphog 21.9 1.7E+02 0.0058 19.8 5.2 12 28-39 104-115 (221)
491 3cqj_A L-ribulose-5-phosphate 21.9 2.2E+02 0.0077 20.8 6.1 57 10-66 139-200 (295)
492 3o94_A Nicotinamidase; hydrola 21.8 2.2E+02 0.0077 20.3 7.7 18 22-39 133-150 (211)
493 2gmw_A D,D-heptose 1,7-bisphos 21.7 1.7E+02 0.0058 20.4 5.2 38 140-177 57-111 (211)
494 2zkr_f 60S ribosomal protein L 21.7 55 0.0019 24.8 2.5 49 129-177 131-184 (266)
495 1xzo_A BSSCO, hypothetical pro 21.7 1.8E+02 0.0061 19.1 5.6 41 134-174 52-98 (174)
496 1bvy_F Protein (cytochrome P45 21.6 2.1E+02 0.0073 20.0 9.2 49 105-153 80-139 (191)
497 3tfw_A Putative O-methyltransf 21.6 1.3E+02 0.0045 21.7 4.6 43 20-62 101-145 (248)
498 2c0d_A Thioredoxin peroxidase 21.6 1.3E+02 0.0045 21.5 4.6 36 135-170 76-111 (221)
499 3v2d_S 50S ribosomal protein L 21.6 53 0.0018 21.4 2.1 10 52-61 80-89 (112)
500 4gqc_A Thiol peroxidase, perox 21.6 26 0.00089 23.9 0.7 36 138-173 56-91 (164)
No 1
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=99.92 E-value=3.4e-25 Score=187.16 Aligned_cols=119 Identities=37% Similarity=0.679 Sum_probs=112.9
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 4 ~~~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
|....|++|++||++||.+|+++|+++|++|+|++|++.++|++|+++++|++||+|++|+|++++||+.|+++|++.||
T Consensus 54 g~~~~g~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI 133 (537)
T 3fy4_A 54 GSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGV 133 (537)
T ss_dssp BCSSCBHHHHHHHHHHHHHHHHHHHHTTCCCEEEESCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCceeecccccccccCCCCchhHHHHHHHhhhcc
Q psy17626 84 TVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122 (184)
Q Consensus 84 ~~~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~~ 122 (184)
+++.+++++|++|+++.+++++++|.+||+|++.+.+..
T Consensus 134 ~~~~~~~~~L~~p~~v~~~~~~~~y~vftpf~k~~~~~~ 172 (537)
T 3fy4_A 134 EVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPS 172 (537)
T ss_dssp EEECCCCSSSSCHHHHHHHTSSSCCSSHHHHHHHHCCCT
T ss_pred eEEEecCCEEEchhhcccCCCCCCCCccCHHHHHHHhhc
Confidence 999999999999999987666679999999999987753
No 2
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=99.91 E-value=2.3e-24 Score=182.32 Aligned_cols=121 Identities=50% Similarity=1.024 Sum_probs=113.5
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhc---CCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHh
Q psy17626 4 GTMHIGYNRFRFLLECLADLDRQLKSH---GGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAE 80 (184)
Q Consensus 4 ~~~~~~~~r~~fl~~sL~~L~~~L~~~---g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~ 80 (184)
+.+..|++|++||++||.+|+++|+++ |++|+|++|++.++|++|+++++|++||+|++|++++++||++|+++|++
T Consensus 47 ~~~~~~~~r~~Fl~~sL~~L~~~L~~~~~~G~~L~v~~G~~~~vl~~L~~~~~a~~V~~n~~~~~~~~~RD~~v~~~l~~ 126 (538)
T 3tvs_A 47 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRE 126 (538)
T ss_dssp CSTTCCHHHHHHHHHHHHHHHHHGGGSCSSSSCCEEEESCHHHHHHHHHHHHCEEEECEECCCCGGGHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHHHHh
Confidence 345689999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEecCceeecccccccccCCCCchhHHHHHHHhhhcccc
Q psy17626 81 NNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTM 124 (184)
Q Consensus 81 ~gi~~~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~~~~ 124 (184)
.||+++.+++++|++|++|.+++++.+|.+|++|++.+.++..+
T Consensus 127 ~gi~~~~~~~~~l~~p~~v~~~~~~~~~~~f~~f~~~~~~~~~~ 170 (538)
T 3tvs_A 127 LNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLP 170 (538)
T ss_dssp SSCCCCEECCSSSSCTTHHHHHTTTSCCCSHHHHHHHHTTTTCS
T ss_pred CCceEEEecCCEEEChhhcccCCCCCCCcchHHHHHHHHhhCCC
Confidence 99999999999999999998877767999999999988776544
No 3
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=99.89 E-value=2.1e-22 Score=168.89 Aligned_cols=116 Identities=20% Similarity=0.390 Sum_probs=110.1
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCe
Q psy17626 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 5 ~~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~ 84 (184)
.+..+++|++||++||.+|+++|+++|++|+|++|++.++|++|+++++|++|++|++|++++++||++|+++|++.||+
T Consensus 44 ~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi~ 123 (484)
T 1owl_A 44 SADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIR 123 (484)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHcCCCEEEEeccCChhHHHHHHHHHHHHHHcCcE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCceeecccccccccCCCCchhHHHHHHHhhhc
Q psy17626 85 VKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121 (184)
Q Consensus 85 ~~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~ 121 (184)
++.+++++|++|+++.+++ +++|.+||+|++.+.+.
T Consensus 124 ~~~~~~~~l~~~~~~~~~~-g~~~~vft~f~~~~~~~ 159 (484)
T 1owl_A 124 AVQLWDQLLHSPDQILSGS-GNPYSVYGPFWKNWQAQ 159 (484)
T ss_dssp EEEECCSSSSCTTTCCCTT-SCCCSSHHHHHHHHHHS
T ss_pred EEEecCCEEEchhhhcccC-CCCchhhHHHHHHHHHh
Confidence 9999999999999998865 47999999999998764
No 4
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=99.88 E-value=2.6e-22 Score=168.61 Aligned_cols=115 Identities=17% Similarity=0.295 Sum_probs=109.5
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 4 ~~~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+.+..+++|++||++||.+|+++|+++|++|+|++|++.++|++|+++++|++|++|++|++++++||++|+++|++.||
T Consensus 51 ~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~gi 130 (489)
T 1np7_A 51 GFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGI 130 (489)
T ss_dssp SCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEECCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHhcCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCceeecccccccccCCCCchhHHHHHHHhh
Q psy17626 84 TVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119 (184)
Q Consensus 84 ~~~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~ 119 (184)
+++.+++++|++|+++.+.. +++|.+|++|++.+.
T Consensus 131 ~~~~~~~~~l~~~~~~~~~~-g~~~~vft~F~~~~~ 165 (489)
T 1np7_A 131 EAKGYWGSTLCHPEDLPFSI-QDLPDLFTKFRKDIE 165 (489)
T ss_dssp EEEEECCSSSSCGGGSSSCG-GGCCSSHHHHHHHHH
T ss_pred eEEEecCCeeeCccccccCC-CCCCchHHHHHHHHH
Confidence 99999999999999998854 579999999999987
No 5
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=99.87 E-value=1e-21 Score=166.05 Aligned_cols=116 Identities=19% Similarity=0.251 Sum_probs=110.3
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCC-
Q psy17626 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENN- 82 (184)
Q Consensus 4 ~~~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~g- 82 (184)
|....+++|++||++||.+|+++|+++|++|+|++|++.++|++|+++++|++|++|++|++++++||++|+++|++.|
T Consensus 86 ~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gv 165 (525)
T 2j4d_A 86 NFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGN 165 (525)
T ss_dssp CCBSSCHHHHHHHHHHHHHHHHHHHHTTCCCEEEESCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHHHhcCC
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CeEEEecCceeecccccccccCCCCchhHHHHHHHhhh
Q psy17626 83 -ITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC 120 (184)
Q Consensus 83 -i~~~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~ 120 (184)
|+++.+++++|++|+++++.. +++|.+|++|++.+.+
T Consensus 166 ~i~~~~~~~~~L~~p~~v~~~~-g~~~~vft~F~r~~~~ 203 (525)
T 2j4d_A 166 STKLELIWGSTMYHKDDLPFDV-FDLPDVYTQFRKSVEA 203 (525)
T ss_dssp SCEEEEECCSCSSCGGGSSSCG-GGCCSSHHHHHHHHHH
T ss_pred ceEEEEecCCEEEccccccccC-CCCcccHHHHHHHHHH
Confidence 899999999999999999875 4799999999999887
No 6
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=99.87 E-value=7.9e-22 Score=167.35 Aligned_cols=117 Identities=36% Similarity=0.639 Sum_probs=109.3
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeE
Q psy17626 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 6 ~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
...+++|++||++||.+|+++|+++|++|+|++|++.++|++|+++++|++|++|++|+|+++.||+.|+++|++.||++
T Consensus 77 ~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~~~~~gi~~ 156 (543)
T 2wq7_A 77 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRV 156 (543)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCCCEEEESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHHHHHHHHHcCCEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCceeecccccccccCCCCchhHHHHHHHhhhcc
Q psy17626 86 KEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIG 122 (184)
Q Consensus 86 ~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~~ 122 (184)
+.+++++|++|+++..+..+++|.+|++|++.+.++.
T Consensus 157 ~~~~~~~l~~p~~v~~~~~g~~~~vft~F~~~~~~~~ 193 (543)
T 2wq7_A 157 ETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLK 193 (543)
T ss_dssp EEECCSSSSCHHHHHHHTTTSCCCSHHHHHHHHTTSC
T ss_pred EEecCCEEECccccccccCCCCCccHHHHHHHHHHcc
Confidence 9999999999999655445689999999999987653
No 7
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=99.85 E-value=1.6e-20 Score=158.34 Aligned_cols=113 Identities=19% Similarity=0.284 Sum_probs=105.8
Q ss_pred CChhhHHHHHHHHHHHHHHHHhcCCeEEEEE-CChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQ-GSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 8 ~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~-g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
.+..+.+||++||.+|+++|+++|++|+|++ |++.++|++|+++++|++|++|++|+|++++||.+|+++|++.||+++
T Consensus 55 ~~~~~~~fl~~sL~~L~~~L~~~G~~L~v~~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~~~ 134 (509)
T 1u3d_A 55 PGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134 (509)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEE
T ss_pred cchHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCcEEE
Confidence 4666777999999999999999999999998 699999999999999999999999999999999999999999999999
Q ss_pred EecCceeecccccccccCCCCchhHHHHHHHhhhc
Q psy17626 87 EFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121 (184)
Q Consensus 87 ~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~ 121 (184)
.+++++|++|+++.+++ +++|.+|++|++.+.+.
T Consensus 135 ~~~~~~l~~p~~v~~~~-g~~~~vftpf~r~~~~~ 168 (509)
T 1u3d_A 135 SFNADLLYEPWEVTDEL-GRPFSMFAAFWERCLSM 168 (509)
T ss_dssp EECCSCSSCGGGCCCSS-SCCCSSHHHHHHHHHTC
T ss_pred EECCCEEEcCCcccCCC-CCCchhHHHHHHHHHhc
Confidence 99999999999998875 47999999999998764
No 8
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=99.85 E-value=4.3e-21 Score=160.37 Aligned_cols=113 Identities=15% Similarity=0.166 Sum_probs=106.4
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHhcCCeEEEE----ECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhC
Q psy17626 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAEN 81 (184)
Q Consensus 6 ~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~----~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~ 81 (184)
+..+++|++||++||.+|+++|+++|++|+|+ .|++.++|++|+++++|++|++|++|+|++++||++|+++|++
T Consensus 44 ~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~- 122 (471)
T 1dnp_A 44 HNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN- 122 (471)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSHHHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCTT-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEccCCCCHHHHHHHHHHHcCCCEEEEecccCchHHHHHHHHHHHhcC-
Confidence 46899999999999999999999999999999 9999999999999999999999999999999999999999875
Q ss_pred CCeEEEecCceeecccccccccCCCCchhHHHHHHHhhhc
Q psy17626 82 NITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121 (184)
Q Consensus 82 gi~~~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~ 121 (184)
|+++.+++++|++|+++.+++ +++|.+||+|++.+.+.
T Consensus 123 -i~~~~~~~~~l~~~~~~~~~~-g~~~~vft~f~~~~~~~ 160 (471)
T 1dnp_A 123 -VVCEGFDDSVILPPGAVMTGN-HEMYKVFTPFKNAWLKR 160 (471)
T ss_dssp -SEEEEECCSSSSCTTSSCCTT-SCCCSSHHHHHHHHHHH
T ss_pred -cEEEEecCCEEEchhhcccCC-CCCCcchHHHHHHHHHh
Confidence 999999999999999998875 47999999999988653
No 9
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=99.83 E-value=4.4e-20 Score=152.90 Aligned_cols=105 Identities=20% Similarity=0.365 Sum_probs=101.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 8 ~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
.+++|++||++||.+|+++|+++|++|+|++|++.++|++|++ +|++|++|++|++++++||++|+++|++.||+++.
T Consensus 46 ~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 123 (440)
T 2e0i_A 46 KSEFAVSFMINSLLELDDELRKKGSRLNVFFGEAEKVVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKA 123 (440)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTTCCCEEEESCHHHHHHHHCT--TCSEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHc--CCCEEEEecccChHHHHHHHHHHHHHHHcCceEEE
Confidence 8999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred ecCceeecccccccccCCCCchhHHHHHHHhhhc
Q psy17626 88 FVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121 (184)
Q Consensus 88 ~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~ 121 (184)
+++++|++|+++ +|++||+|++.+.+.
T Consensus 124 ~~~~~l~~~~~~-------~y~vftpf~~~~~~~ 150 (440)
T 2e0i_A 124 YEDYLLTPKSLF-------HHRNFTSFYNEVSKV 150 (440)
T ss_dssp ECCSCSSCGGGC-------CCSSHHHHHHHHTTS
T ss_pred ecCCEEEccccc-------CcccCcHHHHHHHHh
Confidence 999999999988 689999999998764
No 10
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=99.81 E-value=1.2e-19 Score=149.63 Aligned_cols=102 Identities=17% Similarity=0.258 Sum_probs=98.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 9 ~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
+++|++|+++||.+|+++|+++|++|+|++|++.++|++|+++++|++|++|++|++++++||++|+++| ||+++.+
T Consensus 43 ~~~r~~fl~~sL~~l~~~L~~~g~~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l---~i~~~~~ 119 (420)
T 2j07_A 43 TPRRRAWFLENVRALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREAL---PVPLHLL 119 (420)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---SSCEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHcCCCEEEEecccChhHHHHHHHHHHHc---CCeEEEe
Confidence 8899999999999999999999999999999999999999999999999999999999999999999988 9999999
Q ss_pred cCceeecccccccccCCCCchhHHHHHHHhh
Q psy17626 89 VSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119 (184)
Q Consensus 89 ~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~ 119 (184)
++++|++|++ +++|.+||+|++.+.
T Consensus 120 ~~~~l~~~~~------~~~~~~~t~f~k~~~ 144 (420)
T 2j07_A 120 PAPHLLPPDL------PRAYRVYTPFSRLYR 144 (420)
T ss_dssp CCCCSSCTTC------SSCCSSHHHHHTTCC
T ss_pred CCCEEEccCC------CCccccccHHHHHHh
Confidence 9999999997 369999999999876
No 11
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=99.78 E-value=1.3e-18 Score=146.18 Aligned_cols=108 Identities=14% Similarity=0.083 Sum_probs=95.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHH--hCCC
Q psy17626 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCA--ENNI 83 (184)
Q Consensus 6 ~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~--~~gi 83 (184)
+..|++|++||++||.+|+++|+++|++|+|++|+|.++ ++|+++++|++||++.++...+++||++|+++|+ +.||
T Consensus 83 ~~~~~~r~~FL~~sL~dL~~~L~~lG~~L~v~~G~p~~v-~~L~~~~~a~~V~~d~ep~~~~r~rD~~V~~~l~~~~~gi 161 (506)
T 3umv_A 83 LSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAEI-PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGV 161 (506)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCTTHH-HHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTS
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHcCCceEEEecChHHH-HHHHHhcCCCEEEeccChhHHHHHHHHHHHHHHhhccCCe
Confidence 467899999999999999999999999999999999999 9999999999999977766666789999999997 6899
Q ss_pred eEEEecCceeecccccccccCCCCchhHHHHHHH
Q psy17626 84 TVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT 117 (184)
Q Consensus 84 ~~~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~ 117 (184)
+++.+++++|++|+.+.+++ .|.+++.+.+.
T Consensus 162 ~~~~~~~~~l~~p~~v~~~~---~~~~~t~~~~~ 192 (506)
T 3umv_A 162 AVHQVDAHNVVPVWTASAKM---EYSAKTFRGKV 192 (506)
T ss_dssp EEEEECCSCSSCHHHHCSSC---CSSHHHHHHHH
T ss_pred EEEEeCCcEEECcccccCCC---CCCccCHHHHH
Confidence 99999999999999987653 46666655443
No 12
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=99.74 E-value=1.3e-17 Score=139.91 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=95.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 7 ~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
..+++|++||++||.+|+++|+++|++|+|++|++.++|++|+++++|++|++|++|++++++||+++++.+ ||+++
T Consensus 81 ~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~~~~v~~~l---gi~~~ 157 (482)
T 2xry_A 81 EAGIRQYEFMLKGLQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI---SIPFF 157 (482)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---CSCEE
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHc---CCEEE
Confidence 368899999999999999999999999999999999999999999999999999999999999999888665 99999
Q ss_pred EecCceeecccccccccCCCCchhHHHHHH
Q psy17626 87 EFVSHTLWDPEVVIQTNGNVPPLTYKMYLH 116 (184)
Q Consensus 87 ~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~ 116 (184)
.+++++|++|+++.+++ .|.+|+.|.+
T Consensus 158 ~~~~~~l~~~~~~~~~~---~~~v~tf~~~ 184 (482)
T 2xry_A 158 EVDAHNVVPCWEASQKH---EYAAHTFRPK 184 (482)
T ss_dssp EECCSSSSCHHHHCSSC---CSSHHHHHHH
T ss_pred EEeCCEEccccccccCC---CCceecchHH
Confidence 99999999999987653 4899986654
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=99.26 E-value=2.6e-11 Score=101.39 Aligned_cols=104 Identities=9% Similarity=0.047 Sum_probs=92.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhcCCeEEEEE-------CChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHH
Q psy17626 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ-------GSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCA 79 (184)
Q Consensus 7 ~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~-------g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~ 79 (184)
...++|..|++.||++|+++|+++|.+|.++. |++.++|++++++++++.|+++ +|++..+|+.|+++
T Consensus 56 ~~h~~Ki~~l~saMr~fa~~L~~~G~~v~y~~~~~~~~~g~~~~~L~~l~~~~~~~~v~~~---~P~e~r~~~~l~~~-- 130 (522)
T 3zxs_A 56 PHHPQKIALILAAMRKFARRLQERGFRVAYSRLDDPDTGPSIGAELLRRAAETGAREAVAT---RPGDWRLIEALEAM-- 130 (522)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCCEEEECTTCTTCCSSHHHHHHHHHHHHTCCCEEEE---CCSCHHHHHHHHHS--
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeccCccccCCHHHHHHHHHHHcCCCEEEEe---CcchHHHHHHHHHc--
Confidence 45678999999999999999999999999998 9999999999999999999999 68899999988844
Q ss_pred hCCCeEEEecCc-eeeccccccc--ccCCCCchhHHHHHHHhh
Q psy17626 80 ENNITVKEFVSH-TLWDPEVVIQ--TNGNVPPLTYKMYLHTVS 119 (184)
Q Consensus 80 ~~gi~~~~~~~~-~L~~p~~i~~--~~~~~~~~v~~~F~~~~~ 119 (184)
||++..+++. .|.+|+++.+ + ++++|.++ +|++.+.
T Consensus 131 --gi~v~~~~~~~fL~~~~e~~~~~~-~~k~~~me-~FYR~~R 169 (522)
T 3zxs_A 131 --PLPVRFLPDDRFLCPADEFARWTE-GRKQLRME-WFYREMR 169 (522)
T ss_dssp --SSCEEEECCCCSSSCHHHHHHHHT-TCSSCCHH-HHHHHHH
T ss_pred --CCcEEEeCCCCcccCHHHHHHhhc-CCCCeEee-HHHHHHH
Confidence 9999999986 7999999975 4 45789885 7888765
No 14
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=99.13 E-value=9.3e-12 Score=105.37 Aligned_cols=75 Identities=37% Similarity=0.823 Sum_probs=66.4
Q ss_pred hHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHhC---CCeEEEEeCChhHHHHHHHHHcCcCeEEEcccccCC
Q psy17626 110 TYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSH---GGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184 (184)
Q Consensus 110 v~~~F~~~~~~~~~~~~~~~r~~fl~~~L~~L~~~L~~~---g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~~~~~ 184 (184)
+...|...+..+..+..++++..||.+||.+|+++|+++ |++|+|+.|++.++|++|+++++|++||+|++|+++
T Consensus 35 vl~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~~~~G~~L~v~~G~~~~vl~~L~~~~~a~~V~~n~~~~~~ 112 (538)
T 3tvs_A 35 LIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPI 112 (538)
T ss_dssp CCEEEEECSSSSCSTTCCHHHHHHHHHHHHHHHHHGGGSCSSSSCCEEEESCHHHHHHHHHHHHCEEEECEECCCCGG
T ss_pred EEEEEecChhhhccCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHcCCCEEEEccCCCHH
Confidence 333455555566667789999999999999999999999 999999999999999999999999999999999975
No 15
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=99.10 E-value=6.9e-11 Score=99.94 Aligned_cols=63 Identities=41% Similarity=0.777 Sum_probs=59.4
Q ss_pred cccccCcchhHHHHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcccccCC
Q psy17626 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184 (184)
Q Consensus 122 ~~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~~~~~ 184 (184)
+.+..++++..||.+||.+|+++|+++|++|+|+.|++.++|++|+++++|++||+|++|+|+
T Consensus 54 g~~~~g~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~~p~ 116 (537)
T 3fy4_A 54 GSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPY 116 (537)
T ss_dssp BCSSCBHHHHHHHHHHHHHHHHHHHHTTCCCEEEESCHHHHHHHHHTTSCEEEEEECCCCSHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHcCCCEEEEeccccHH
Confidence 455688999999999999999999999999999999999999999999999999999999874
No 16
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=99.02 E-value=9.1e-11 Score=98.32 Aligned_cols=71 Identities=23% Similarity=0.523 Sum_probs=63.5
Q ss_pred HHHHhhhccccccCcchhHHHHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcccccCC
Q psy17626 114 YLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184 (184)
Q Consensus 114 F~~~~~~~~~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~~~~~ 184 (184)
|...+..++.+..+.++..|+.+||.+|+++|+++|++|+++.|++.++|++|+++++|++||+|++|+|+
T Consensus 35 fi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~p~ 105 (484)
T 1owl_A 35 FCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPY 105 (484)
T ss_dssp EEECHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEESCHHHHHHHHHHHTTCSEEEEECCCSHH
T ss_pred EEEcchhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHcCCCEEEEeccCChh
Confidence 44444455566788999999999999999999999999999999999999999999999999999999874
No 17
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=98.96 E-value=1.7e-10 Score=97.89 Aligned_cols=63 Identities=40% Similarity=0.740 Sum_probs=58.8
Q ss_pred cccccCcchhHHHHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcccccCC
Q psy17626 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184 (184)
Q Consensus 122 ~~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~~~~~ 184 (184)
..+..+.++..|+.+||.+|+++|+++|++|+++.|++.++|.+|+++++|++||+|++|+|+
T Consensus 75 ~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~p~ 137 (543)
T 2wq7_A 75 DWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPY 137 (543)
T ss_dssp GCTTSCHHHHHHHHHHHHHHHHHHHHTTCCCEEEESCHHHHHHHHHHHTTEEEEEEECCCSHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHcCCCEEEEecCcCHH
Confidence 345678889999999999999999999999999999999999999999999999999999873
No 18
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=98.95 E-value=9.9e-11 Score=97.75 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=64.9
Q ss_pred HHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHhCCCeEEEE----eCChhHHHHHHHHHcCcCeEEEcccccCC
Q psy17626 111 YKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QGSPISIFQKLKRELNFTKLCFEQDCEAY 184 (184)
Q Consensus 111 ~~~F~~~~~~~~~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~----~g~~~~~l~~l~~~~~~~~v~~n~~~~~~ 184 (184)
...|...+..++.+..+.++..|+.+||.+|+++|+++|++|+++ .|++.++|.+|+++++|++||+|++|+|+
T Consensus 31 ~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~ 108 (471)
T 1dnp_A 31 LALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVN 108 (471)
T ss_dssp EEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSHHHHHHHHHHHHHHHTCCEEEEECCCSHH
T ss_pred EEEEEECchhhccCCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEccCCCCHHHHHHHHHHHcCCCEEEEecccCch
Confidence 333444555556677899999999999999999999999999999 89999999999999999999999999873
No 19
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=98.94 E-value=2.9e-10 Score=95.38 Aligned_cols=62 Identities=18% Similarity=0.404 Sum_probs=58.6
Q ss_pred ccccCcchhHHHHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcccccCC
Q psy17626 123 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184 (184)
Q Consensus 123 ~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~~~~~ 184 (184)
.+..++++..|+.+||.+|+++|+++|++|+++.|++.++|++|+++++|++||+|++|+|+
T Consensus 52 ~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~ 113 (489)
T 1np7_A 52 FAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQE 113 (489)
T ss_dssp CBSSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHTTEEEEEEECCCSHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEECCHHHHHHHHHHHcCCCEEEEecccCHH
Confidence 45678899999999999999999999999999999999999999999999999999999874
No 20
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=98.88 E-value=2.2e-09 Score=90.75 Aligned_cols=61 Identities=28% Similarity=0.447 Sum_probs=57.9
Q ss_pred cccCcchhHHHHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcccccCC
Q psy17626 124 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184 (184)
Q Consensus 124 ~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~~~~~ 184 (184)
+..+.++..|+.+||.+|+++|+++|++|+++.|++.++|.+|+++++|++||+|++|+|+
T Consensus 88 ~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~ 148 (525)
T 2j4d_A 88 PKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSE 148 (525)
T ss_dssp BSSCHHHHHHHHHHHHHHHHHHHHTTCCCEEEESCHHHHHHHHHHHHTCSEEEEECCCSHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHcCCCEEEEeccCCHH
Confidence 5578889999999999999999999999999999999999999999999999999999874
No 21
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=98.87 E-value=4.6e-10 Score=92.91 Aligned_cols=65 Identities=14% Similarity=0.279 Sum_probs=58.2
Q ss_pred hhhccccc-cCcchhHHHHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcccccCC
Q psy17626 118 VSCIGTMH-IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184 (184)
Q Consensus 118 ~~~~~~~~-~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~~~~~ 184 (184)
+..++.+. .+.++..|+.+||.+|+++|+++|++|+++.|++.++|+++++ +|++||+|++|+|+
T Consensus 37 p~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~--~~~~v~~~~~~~~~ 102 (440)
T 2e0i_A 37 PRQLINNPYKSEFAVSFMINSLLELDDELRKKGSRLNVFFGEAEKVVSRFFN--KVDAIYVNEDYTPF 102 (440)
T ss_dssp HHHHSSCTTCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEESCHHHHHHHHCT--TCSEEEEECCCSHH
T ss_pred hhhhccCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHc--CCCEEEEecccChH
Confidence 33344445 7889999999999999999999999999999999999999998 99999999999873
No 22
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=98.84 E-value=3.9e-09 Score=86.96 Aligned_cols=58 Identities=21% Similarity=0.366 Sum_probs=55.9
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcccccCC
Q psy17626 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184 (184)
Q Consensus 127 ~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~~~~~ 184 (184)
+.++..|+.+||.+|+++|+++|++|+++.|++.++|+++++++++++||+|++|+|+
T Consensus 43 ~~~r~~fl~~sL~~l~~~L~~~g~~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~ 100 (420)
T 2j07_A 43 TPRRRAWFLENVRALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSHTPY 100 (420)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHTTCSEEEEECCCSHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHcCCCEEEEecccChh
Confidence 8888999999999999999999999999999999999999999999999999999873
No 23
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=98.82 E-value=1.7e-09 Score=91.16 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=52.9
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCCeEEEEe-CChhHHHHHHHHHcCcCeEEEcccccCC
Q psy17626 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQ-GSPISIFQKLKRELNFTKLCFEQDCEAY 184 (184)
Q Consensus 127 ~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~-g~~~~~l~~l~~~~~~~~v~~n~~~~~~ 184 (184)
+..+..|+.+||.+|+++|+++|++|+++. |++.++|.+|+++++|++||+|++|+|+
T Consensus 56 ~~~~~~fl~~sL~~L~~~L~~~G~~L~v~~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~ 114 (509)
T 1u3d_A 56 GRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPL 114 (509)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHHHTCCEEEEECCCSHH
T ss_pred chHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHcCCCEEEEecccCHH
Confidence 444556999999999999999999999998 6999999999999999999999999873
No 24
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=98.75 E-value=1.2e-08 Score=85.52 Aligned_cols=58 Identities=19% Similarity=0.340 Sum_probs=55.6
Q ss_pred cCcchhHHHHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcccccC
Q psy17626 126 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEA 183 (184)
Q Consensus 126 ~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~~~~ 183 (184)
.+.++..|+.+||.+|+++|+++|++|+++.|++.++|++|+++++|++||+|++|++
T Consensus 82 ~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~ 139 (482)
T 2xry_A 82 AGIRQYEFMLKGLQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSPLR 139 (482)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHTTCSEEEEECCCSH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHcCCCEEEEecccch
Confidence 4778899999999999999999999999999999999999999999999999999986
No 25
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=98.74 E-value=1.5e-08 Score=85.16 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=52.4
Q ss_pred ccCcchhHHHHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcccc
Q psy17626 125 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181 (184)
Q Consensus 125 ~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~~ 181 (184)
..+.++..||.+||.+|+++|+++|++|+|+.|++.++ ++|+++++|++||+|.++
T Consensus 84 ~~~~~r~~FL~~sL~dL~~~L~~lG~~L~v~~G~p~~v-~~L~~~~~a~~V~~d~ep 139 (506)
T 3umv_A 84 SARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAEI-PALVQRLGASTLVADFSP 139 (506)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCTTHH-HHHHHHTTCSEEEECCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCceEEEecChHHH-HHHHHhcCCCEEEeccCh
Confidence 46788999999999999999999999999999999999 999999999999997654
No 26
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=97.19 E-value=0.00079 Score=56.51 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=50.7
Q ss_pred ccCcchhHHHHHHHHHHHHHHHhCCCeEEEEe-------CChhHHHHHHHHHcCcCeEEEcc
Q psy17626 125 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ-------GSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 125 ~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~-------g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
...+.|..|+..|+..++++|++.|.+|.++. |++.+.|+++++++++++|+++.
T Consensus 56 ~~h~~Ki~~l~saMr~fa~~L~~~G~~v~y~~~~~~~~~g~~~~~L~~l~~~~~~~~v~~~~ 117 (522)
T 3zxs_A 56 PHHPQKIALILAAMRKFARRLQERGFRVAYSRLDDPDTGPSIGAELLRRAAETGAREAVATR 117 (522)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCCEEEECTTCTTCCSSHHHHHHHHHHHHTCCCEEEEC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeccCccccCCHHHHHHHHHHHcCCCEEEEeC
Confidence 34567889999999999999999999999998 88999999999999999999993
No 27
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=93.81 E-value=1.7 Score=33.23 Aligned_cols=162 Identities=9% Similarity=-0.008 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhcCCeE--EEE-ECChHHHHHHHHHHcCcceEEEeecccchhHH--HHHHHHHHHHhCCCeEEEecCce
Q psy17626 18 ECLADLDRQLKSHGGQL--FIV-QGSPISIFQKLKRELNFTKLCFEQDCEALWHK--RDKKVKKWCAENNITVKEFVSHT 92 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L--~v~-~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~--rd~~v~~~l~~~gi~~~~~~~~~ 92 (184)
+.|.++.+.+...|++. .+. .|++.+.|.+.+++.+++-|+.-..-...... .-....+.+...++++..+....
T Consensus 73 ~~l~~~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~ 152 (319)
T 3olq_A 73 AWIKQQARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDKE 152 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESSC
T ss_pred HHHHHHHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCcc
Confidence 44556666666667754 455 79999999999999999999987643221111 12334556677789988776554
Q ss_pred eecccccccccCCCCc---------hhHHHHHHHhhhc--c----------ccccC-------cchhHH----HHHHHHH
Q psy17626 93 LWDPEVVIQTNGNVPP---------LTYKMYLHTVSCI--G----------TMHIG-------YNRFRF----LLECLAD 140 (184)
Q Consensus 93 L~~p~~i~~~~~~~~~---------~v~~~F~~~~~~~--~----------~~~~~-------~~r~~f----l~~~L~~ 140 (184)
.-.+..|.-.-+++.. .....-....... + .+... .....+ ..+..+.
T Consensus 153 ~~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (319)
T 3olq_A 153 WPEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIA 232 (319)
T ss_dssp CCTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHH
Confidence 3334444433233342 1111111111111 1 00000 000112 2233444
Q ss_pred HHHHHHhCCC---eEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 141 LDRQLKSHGG---QLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 141 L~~~L~~~g~---~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
|+.-+++.|+ ...+..|++.+.|.+++++.+++-|+...
T Consensus 233 l~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~ 274 (319)
T 3olq_A 233 MKELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGI 274 (319)
T ss_dssp HHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEec
Confidence 5555566776 47778899999999999999999887653
No 28
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=93.70 E-value=1.7 Score=32.83 Aligned_cols=156 Identities=10% Similarity=0.034 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECCh-H---HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQGSP-I---SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g~~-~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
..|..+-+..+.+.+++.|..+.+...+. . ..+.+.+...+++.|+..-.... + ...+.+.+.|+++..+
T Consensus 24 ~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-----~-~~~~~l~~~~iPvV~i 97 (295)
T 3hcw_A 24 NPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN-----D-PIKQMLIDESMPFIVI 97 (295)
T ss_dssp CHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT-----C-HHHHHHHHTTCCEEEE
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC-----h-HHHHHHHhCCCCEEEE
Confidence 34888889999999999999998875432 2 23445556678999888532111 1 2334456779999887
Q ss_pred cCceeec---ccccccccCCCCchhHHHHHHHhhh---cccccc----CcchhHHHHHHHHHHHHHHHhCCCeEEEEeCC
Q psy17626 89 VSHTLWD---PEVVIQTNGNVPPLTYKMYLHTVSC---IGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLFIVQGS 158 (184)
Q Consensus 89 ~~~~L~~---p~~i~~~~~~~~~~v~~~F~~~~~~---~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~ 158 (184)
+...--. ...|..+ .+..-+...+. .+-.+. ++.......+.+.-..+.|++.|++..+..++
T Consensus 98 ~~~~~~~~~~~~~V~~D-------~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~ 170 (295)
T 3hcw_A 98 GKPTSDIDHQFTHIDND-------NILASENLTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETS 170 (295)
T ss_dssp SCCCSSGGGGSCEEEEC-------HHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CCCCccccCCceEEecC-------cHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHHHHHHHHHHHHcCCCeeEEecc
Confidence 6532111 0111111 11111111111 111111 22222345566778888999999988766542
Q ss_pred -----hhHHHHHHHHHc----CcCeEEEcccc
Q psy17626 159 -----PISIFQKLKREL----NFTKLCFEQDC 181 (184)
Q Consensus 159 -----~~~~l~~l~~~~----~~~~v~~n~~~ 181 (184)
..+.+.++.+.. ..++||+..|.
T Consensus 171 ~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~ 202 (295)
T 3hcw_A 171 NEREVILNYMQNLHTRLKDPNIKQAIISLDAM 202 (295)
T ss_dssp SCHHHHHHHHHHHHHHHTCTTSCEEEEESSHH
T ss_pred CCHHHHHHHHHHHHhhcccCCCCcEEEECChH
Confidence 234566777766 68999987653
No 29
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=93.47 E-value=1.9 Score=32.67 Aligned_cols=159 Identities=13% Similarity=0.132 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHhcCCeEEE---E-ECChHHHHHHHHHHcCcceEEEeecccchhHHH--HHHHHHHHHhCCCeEEEe
Q psy17626 15 FLLECLADLDRQLKSHGGQLFI---V-QGSPISIFQKLKRELNFTKLCFEQDCEALWHKR--DKKVKKWCAENNITVKEF 88 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v---~-~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~r--d~~v~~~l~~~gi~~~~~ 88 (184)
-..+.|.++.+.+.+.|++... . .|++.+.| .+++.+++-|+.-..-....... -....+.+...++++..+
T Consensus 83 ~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv 160 (294)
T 3loq_A 83 KAEEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIF 160 (294)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEe
Confidence 4456677788888888988765 5 89999999 89999999999975422221111 123455667778998877
Q ss_pred cCcee--ecccccccccCCCCchh--HHHHHHHhhhccc-----cccCcchhHHHHHHHHHHHHHHHhCCCe--EEEEeC
Q psy17626 89 VSHTL--WDPEVVIQTNGNVPPLT--YKMYLHTVSCIGT-----MHIGYNRFRFLLECLADLDRQLKSHGGQ--LFIVQG 157 (184)
Q Consensus 89 ~~~~L--~~p~~i~~~~~~~~~~v--~~~F~~~~~~~~~-----~~~~~~r~~fl~~~L~~L~~~L~~~g~~--L~v~~g 157 (184)
....- ..+..|.-.-+++.... ...........+. +-..... -.+.++++.+.|++.|++ ..+..|
T Consensus 161 ~~~~~~~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~---~~~~l~~~~~~l~~~~~~~~~~~~~g 237 (294)
T 3loq_A 161 KHDMVVNSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD---KTADLRVMEEVIGAEGIEVHVHIESG 237 (294)
T ss_dssp CCCTTTTCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC---CHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred cCccccCccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch---HHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 65431 23334433222222211 1111111111111 0001111 345677888888888876 445679
Q ss_pred ChhHHHHHHHHHcCcCeEEEc
Q psy17626 158 SPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 158 ~~~~~l~~l~~~~~~~~v~~n 178 (184)
++.+.|.+++++.+++-|+..
T Consensus 238 ~~~~~I~~~a~~~~~dLlV~G 258 (294)
T 3loq_A 238 TPHKAILAKREEINATTIFMG 258 (294)
T ss_dssp CHHHHHHHHHHHTTCSEEEEE
T ss_pred CHHHHHHHHHHhcCcCEEEEe
Confidence 999999999999999988764
No 30
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=92.58 E-value=2.6 Score=31.85 Aligned_cols=159 Identities=10% Similarity=-0.044 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhcCCeEEE--E-ECChHHHHHHHHHHcCcceEEEeecccchhHH--HHHHHHHHHHhCCCeEEEec-Cce
Q psy17626 19 CLADLDRQLKSHGGQLFI--V-QGSPISIFQKLKRELNFTKLCFEQDCEALWHK--RDKKVKKWCAENNITVKEFV-SHT 92 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v--~-~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~--rd~~v~~~l~~~gi~~~~~~-~~~ 92 (184)
.|.++.+.+...|++... . .|++.+.|.+.+++.+++-|+.-..-...... ......+.+...++++..+. +..
T Consensus 52 ~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~~~~~ 131 (290)
T 3mt0_A 52 ALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTKTARP 131 (290)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEECCCSC
T ss_pred HHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEecCCCC
Confidence 355666677777877543 4 47899999999999999999987643221111 12344566677789988876 333
Q ss_pred eecccccccccCCCCch------hHHHHHHH---hhhccc-----cccCcch-----------hHHHHHHHHHHHHHHHh
Q psy17626 93 LWDPEVVIQTNGNVPPL------TYKMYLHT---VSCIGT-----MHIGYNR-----------FRFLLECLADLDRQLKS 147 (184)
Q Consensus 93 L~~p~~i~~~~~~~~~~------v~~~F~~~---~~~~~~-----~~~~~~r-----------~~fl~~~L~~L~~~L~~ 147 (184)
. ++..|.-.-+++... ........ ....+. +-..... .....+..+.|+.-+++
T Consensus 132 ~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (290)
T 3mt0_A 132 W-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAE 210 (290)
T ss_dssp S-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3 555554433333431 11111111 111110 0001000 01112223334444445
Q ss_pred CCC---eEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 148 HGG---QLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 148 ~g~---~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
.|+ ...+..|++.+.|.+++++.+++-|+..
T Consensus 211 ~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG 244 (290)
T 3mt0_A 211 YGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIG 244 (290)
T ss_dssp HTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEE
T ss_pred cCCCcceEEEeccCHHHHHHHHHHhcCCCEEEEC
Confidence 565 4677889999999999999999998865
No 31
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=90.98 E-value=2.3 Score=28.08 Aligned_cols=65 Identities=11% Similarity=0.067 Sum_probs=43.5
Q ss_pred HHHHHHhcCCe---EEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 23 LDRQLKSHGGQ---LFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 23 L~~~L~~~g~~---L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
|++-+++.|.+ ..+..|++.+.|.+.+++.+++-|++-.. .......-....+.+...++++..+
T Consensus 69 l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~lgs~~~~vl~~~~~pVlvv 136 (141)
T 1jmv_A 69 LLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSKLMSSTRQVMNTIKIDMLVV 136 (141)
T ss_dssp HHHHHHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-CchhhhhcchHHHHHhcCCCCEEEe
Confidence 33333445654 57788999999999999999999999876 3322222333344556667877654
No 32
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=90.41 E-value=1.9 Score=31.05 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEee
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 61 (184)
.....++-+.|++.|.++.|..+.+...+..+++..+++.++.+.
T Consensus 94 ~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~~~~~~~ 138 (232)
T 3fvv_A 94 TVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATD 138 (232)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCCEEEECE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEcc
Confidence 456677788888999999999999999999999999998777653
No 33
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=89.97 E-value=5 Score=30.26 Aligned_cols=156 Identities=8% Similarity=-0.005 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECCh-H---HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQGSP-I---SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g~~-~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
..|..+-+..+.+.++++|..+.+...+. . ..+.+.+...+++.|++.-.... + ...+.+.+.|+++..+
T Consensus 39 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-----~-~~~~~l~~~~iPvV~i 112 (305)
T 3huu_A 39 NPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKD-----D-PIEHLLNEFKVPYLIV 112 (305)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTT-----C-HHHHHHHHTTCCEEEE
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCC-----c-HHHHHHHHcCCCEEEE
Confidence 35788888899999999999998876432 2 23445555678999887532111 1 2334456779999988
Q ss_pred cCceeecccccccccCCCCchhHHHHHHHhhh---cccccc----CcchhHHHHHHHHHHHHHHHhCCCeEE-EEeCChh
Q psy17626 89 VSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC---IGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLF-IVQGSPI 160 (184)
Q Consensus 89 ~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~---~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~-v~~g~~~ 160 (184)
+... +...+..= ....+..-+...+. .+-.+. +........+.+.-..+.|++.|++.. +..++..
T Consensus 113 ~~~~--~~~~~~~V----~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~ 186 (305)
T 3huu_A 113 GKSL--NYENIIHI----DNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVIKSMN 186 (305)
T ss_dssp SCCC--SSTTCCEE----ECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCEEEECSHH
T ss_pred CCCC--cccCCcEE----EeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCcccEEecCcH
Confidence 7654 22111110 01111111111111 111111 222223344667778888998888754 5666543
Q ss_pred ---HHHHHH-HH-HcCcCeEEEccc
Q psy17626 161 ---SIFQKL-KR-ELNFTKLCFEQD 180 (184)
Q Consensus 161 ---~~l~~l-~~-~~~~~~v~~n~~ 180 (184)
+.+.++ .+ ...+++||+..|
T Consensus 187 ~~~~~~~~~~l~~~~~~~ai~~~nd 211 (305)
T 3huu_A 187 DLRDFIKQYCIDASHMPSVIITSDV 211 (305)
T ss_dssp HHHHHC--------CCCSEEEESSH
T ss_pred HHHHHHHHhhhcCCCCCCEEEECCh
Confidence 344455 44 347899998765
No 34
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=89.73 E-value=3.1 Score=27.56 Aligned_cols=73 Identities=7% Similarity=0.033 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhcCC---eEEEEECChHHHHHH-HHHHcCcceEEEeecc-cchhHH-HHHHHHHHHHhCCCeEEE
Q psy17626 15 FLLECLADLDRQLKSHGG---QLFIVQGSPISIFQK-LKRELNFTKLCFEQDC-EALWHK-RDKKVKKWCAENNITVKE 87 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~---~L~v~~g~~~~~l~~-l~~~~~~~~v~~~~~~-~~~~~~-rd~~v~~~l~~~gi~~~~ 87 (184)
-..+.|..+.+.+.+.|+ ...+..|++.+.|.+ .+++.+++-|+.-..- +...+. .-....+.+...++++..
T Consensus 66 ~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlv 144 (146)
T 3s3t_A 66 HAKDAMRQRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIV 144 (146)
T ss_dssp HHHHHHHHHHHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEE
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEE
Confidence 445567777777877777 567889999999999 9999999999997532 221111 112334455666777654
No 35
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=89.64 E-value=1 Score=31.21 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCe---EEEEECChHHHHHHHHHHcCcceEEEeecc-cchhHHH-HHHHHHHHHhCCCeEEEe
Q psy17626 18 ECLADLDRQLKSHGGQ---LFIVQGSPISIFQKLKRELNFTKLCFEQDC-EALWHKR-DKKVKKWCAENNITVKEF 88 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~---L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~~r-d~~v~~~l~~~gi~~~~~ 88 (184)
+.|.++.+.+.+.|++ ..+..|+|.+.|.+.+++.+++-|++-..- ....+-. -....+.+....+++..+
T Consensus 81 ~~l~~~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV 156 (163)
T 1tq8_A 81 EILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIV 156 (163)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEE
Confidence 4566677777777876 567789999999999999999999987542 2221111 122344556667887754
No 36
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=89.63 E-value=1.6 Score=34.88 Aligned_cols=154 Identities=8% Similarity=-0.008 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCce
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHT 92 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~ 92 (184)
..|..+-+..+.+.+++.|..+.+...+......+.+...+++.|+... . +..+.+.+.+.|+++..++...
T Consensus 36 ~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi~~----~----~~~~~~~l~~~~iPvV~i~~~~ 107 (412)
T 4fe7_A 36 KAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADF----D----DKQIEQALADVDVPIVGVGGSY 107 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CCCSEEEEET----T----CHHHHHHHTTCCSCEEEEEECC
T ss_pred chhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEEec----C----ChHHHHHHhhCCCCEEEecCCc
Confidence 3477778888889999999998888765444344555667899998832 1 1234455677899998776432
Q ss_pred ee-----cccccccccCCCCchhHHHHHHHhhh---cccccc----Ccchh--HHHHHHHHHHHHHHHhCCCeEEEEeCC
Q psy17626 93 LW-----DPEVVIQTNGNVPPLTYKMYLHTVSC---IGTMHI----GYNRF--RFLLECLADLDRQLKSHGGQLFIVQGS 158 (184)
Q Consensus 93 L~-----~p~~i~~~~~~~~~~v~~~F~~~~~~---~~~~~~----~~~r~--~fl~~~L~~L~~~L~~~g~~L~v~~g~ 158 (184)
-- ....|..+ .+..-+...+. .+-.+. ++... .+..+.+.-..+.|++.|++..+..+.
T Consensus 108 ~~~~~~~~~~~V~~D-------~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~ 180 (412)
T 4fe7_A 108 HLAESYPPVHYIATD-------NYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGL 180 (412)
T ss_dssp SSGGGSCSSEEEEEC-------HHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCCEEECCS
T ss_pred cccccCCCCCEEEeC-------HHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHHHHHHHHHHcCCCccccccc
Confidence 11 01111111 11111111111 111111 11111 245667778888899999887666532
Q ss_pred ---------hhHHHHHHHHH-cCcCeEEEcccc
Q psy17626 159 ---------PISIFQKLKRE-LNFTKLCFEQDC 181 (184)
Q Consensus 159 ---------~~~~l~~l~~~-~~~~~v~~n~~~ 181 (184)
..+.+.++.+. ..+++||+..|.
T Consensus 181 ~~~~~~~~~~~~~~~~~l~~~~~~~aI~~~nD~ 213 (412)
T 4fe7_A 181 ETAPENWQHAQNRLADWLQTLPPQTGIIAVTDA 213 (412)
T ss_dssp CSSCSSHHHHHHHHHHHHHHSCTTEEEEESSHH
T ss_pred cccccchhhHHHHHHHHHHhCCCCeEEEEEecH
Confidence 23455566655 478999987653
No 37
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=89.16 E-value=4.3 Score=30.34 Aligned_cols=155 Identities=10% Similarity=0.014 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC----hHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGS----PISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~----~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|..+-+..+.+.+++.|..+.+...+ ....+.+++...+++.|++.... ... ...+.+.+.|+++..++
T Consensus 23 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-~~~-----~~~~~l~~~~iPvV~i~ 96 (288)
T 3gv0_A 23 GFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIE-PND-----PRVRFMTERNMPFVTHG 96 (288)
T ss_dssp CHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCC-TTC-----HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCC-CCc-----HHHHHHhhCCCCEEEEC
Confidence 477888889999999999999887532 23456666777899998875321 111 22334566799998876
Q ss_pred Cceeec-ccccccccCCCCchhHHHHHHHhhh---ccccc----cCcchhHHHHHHHHHHHHHHHhCCCeEEEE---eCC
Q psy17626 90 SHTLWD-PEVVIQTNGNVPPLTYKMYLHTVSC---IGTMH----IGYNRFRFLLECLADLDRQLKSHGGQLFIV---QGS 158 (184)
Q Consensus 90 ~~~L~~-p~~i~~~~~~~~~~v~~~F~~~~~~---~~~~~----~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~---~g~ 158 (184)
...--+ ...|..+ .+..-+...+. .+-.+ .+........+.+.-..+.+++.|+++... .++
T Consensus 97 ~~~~~~~~~~V~~D-------~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 169 (288)
T 3gv0_A 97 RSDMGIEHAFHDFD-------NEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIE 169 (288)
T ss_dssp CCCSSCCCEEEEEC-------HHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTT
T ss_pred CcCCCCCCcEEEeC-------cHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheeccc
Confidence 542110 0111111 11111111111 11111 122223345567777888899989875532 222
Q ss_pred --h---hHHHHHHHHHc-CcCeEEEcccc
Q psy17626 159 --P---ISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 159 --~---~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
. .+.+.++.++. .+++||+..|.
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 198 (288)
T 3gv0_A 170 TPLEKIRDFGQRLMQSSDRPDGIVSISGS 198 (288)
T ss_dssp SCHHHHHHHHHHHTTSSSCCSEEEESCHH
T ss_pred cchHHHHHHHHHHHhCCCCCcEEEEcCcH
Confidence 1 24566666654 68999987653
No 38
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=88.91 E-value=1.4 Score=30.06 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCe--EEEEECChHHHHHHHHHHcCcceEEEeecc-cchhHH-HHHHHHHHHHhCCCeEEEec
Q psy17626 17 LECLADLDRQLKSHGGQ--LFIVQGSPISIFQKLKRELNFTKLCFEQDC-EALWHK-RDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~--L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~~-rd~~v~~~l~~~gi~~~~~~ 89 (184)
.+.|..+.+.+...|++ ..+..|++.+.|.+.+++.+++.|+.-..- +...+- .-....+.+....+++..+.
T Consensus 82 ~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv~ 158 (162)
T 1mjh_A 82 KNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVK 158 (162)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEEC
T ss_pred HHHHHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEEe
Confidence 34566677777777876 457789999999999999999999987542 221111 11233445566678877553
No 39
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=88.66 E-value=5.8 Score=29.27 Aligned_cols=153 Identities=10% Similarity=-0.016 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECC--hHH--HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQGS--PIS--IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g~--~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
..|..+-+..+.+.++++|..+.+...+ +.. .+.+.+...+++.|+..- .. +..++..+.+.|+++..+
T Consensus 20 ~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~---~~----~~~~~~~l~~~~iPvV~~ 92 (277)
T 3e61_A 20 NPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA---FN----ENIIENTLTDHHIPFVFI 92 (277)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG---GG----HHHHHHHHHHC-CCEEEG
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec---CC----hHHHHHHHHcCCCCEEEE
Confidence 3477888888999999999999887643 322 234444557899998854 11 222331566789999987
Q ss_pred cCceeecccccccccCCCCchhHHHHHHHhh---hcccccc----CcchhHHHHHHHHHHHHHHHhCCCeEE-EEeCC--
Q psy17626 89 VSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS---CIGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLF-IVQGS-- 158 (184)
Q Consensus 89 ~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~---~~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~-v~~g~-- 158 (184)
+...--.. .+..++ +..-....+ +.+-.+. +..........+.-+.+.+++.|++.. +..++
T Consensus 93 ~~~~~~~~-~V~~D~-------~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~ 164 (277)
T 3e61_A 93 DRINNEHN-GISTNH-------FKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDYKMLEATLLD 164 (277)
T ss_dssp GGCC----------H-------HHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHHHHHHC---CEEEEEGGGGG
T ss_pred eccCCCCC-eEEech-------HHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccceecCCCC
Confidence 65432211 222211 111111111 1121111 222334555677778888998898766 44332
Q ss_pred hhHHHHHHHHHcCcCeEEEccc
Q psy17626 159 PISIFQKLKRELNFTKLCFEQD 180 (184)
Q Consensus 159 ~~~~l~~l~~~~~~~~v~~n~~ 180 (184)
.......+.+...+++||+..|
T Consensus 165 ~~~~~~~l~~~~~~~ai~~~~d 186 (277)
T 3e61_A 165 NDKKFIDLIKELSIDSIICSND 186 (277)
T ss_dssp SHHHHHHHHHHHTCCEEEESSH
T ss_pred HHHHHHHhhcCCCCCEEEECCc
Confidence 2344444655678999998765
No 40
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=88.10 E-value=1.8 Score=28.67 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhcCC-----eEEEEECChHHHHHHHHHHcCcceEEEeecccchhHH--HHHHHHHHHHhCCCeEEE
Q psy17626 15 FLLECLADLDRQLKSHGG-----QLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHK--RDKKVKKWCAENNITVKE 87 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~-----~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~--rd~~v~~~l~~~gi~~~~ 87 (184)
...+.+..+++-+++.|. ...+..|++.+.|.+.+++.+++-|++-.. .....+ .-....+.+...++++..
T Consensus 63 ~~~~~~~~l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~~~~Gs~~~~v~~~~~~pVlv 141 (143)
T 3fdx_A 63 LREGSETQLKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASH-RPDITTYLLGSNAAAVVRHAECSVLV 141 (143)
T ss_dssp HHHHHHHHHHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESS-CTTCCSCSSCHHHHHHHHHCSSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCC-CCCCeeeeeccHHHHHHHhCCCCEEE
Confidence 455667777777777775 467889999999999999999999999875 322111 112334455666777654
No 41
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=87.62 E-value=3.8 Score=27.12 Aligned_cols=73 Identities=10% Similarity=0.107 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHhcCC-----eEEEEECChHHHHHHHHHHcCcceEEEeecc-cchhHH-HHHHHHHHHHhCCCeEE
Q psy17626 14 RFLLECLADLDRQLKSHGG-----QLFIVQGSPISIFQKLKRELNFTKLCFEQDC-EALWHK-RDKKVKKWCAENNITVK 86 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~-----~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~~-rd~~v~~~l~~~gi~~~ 86 (184)
.-..+.|..+.+.+++.|+ ...+..|++.+.|.+.+++.+++-|+.-..- +...+- .-....+.+...++++.
T Consensus 66 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVl 145 (147)
T 3hgm_A 66 DYATEIAVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVL 145 (147)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEE
Confidence 3455667777888887785 4577899999999999999999999987532 111111 11233444555566654
No 42
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}
Probab=87.57 E-value=3.6 Score=31.89 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
...++-+.|++.|.++.++.++.......+.++.|++.++.+.
T Consensus 182 g~~~~l~~L~~~g~~~~ivS~~~~~~~~~~~~~lgl~~~~~~~ 224 (335)
T 3n28_A 182 ELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDYAQSNT 224 (335)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCCeEEeee
Confidence 3445666778889999999999988899999999999887653
No 43
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=87.48 E-value=7.3 Score=29.01 Aligned_cols=154 Identities=11% Similarity=0.018 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHH--HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPIS--IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|..+-+..+.+.+++.|..+.+... ++.. .+.+.+...+++.|++..... .....+.+.+.|+++..++
T Consensus 21 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~~~~~~~~~~~~iPvV~~~ 94 (291)
T 3egc_A 21 VFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG------EHDYLRTELPKTFPIVAVN 94 (291)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS------CCHHHHHSSCTTSCEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC------ChHHHHHhhccCCCEEEEe
Confidence 47778888899999999999988864 3332 233444556899888754322 1123334556799998876
Q ss_pred Cceeec-ccccccccCCCCchhHHHHHHHhhh---cccccc----CcchhHHHHHHHHHHHHHHHhCCCeEE---EEe--
Q psy17626 90 SHTLWD-PEVVIQTNGNVPPLTYKMYLHTVSC---IGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLF---IVQ-- 156 (184)
Q Consensus 90 ~~~L~~-p~~i~~~~~~~~~~v~~~F~~~~~~---~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~---v~~-- 156 (184)
...--+ ...+.. ..+..-+...+. .+-.+. +........+.+.-..+.+++.|+++. +..
T Consensus 95 ~~~~~~~~~~V~~-------D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 167 (291)
T 3egc_A 95 RELRIPGCGAVLS-------ENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGG 167 (291)
T ss_dssp SCCCCTTCEEEEE-------CHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC--
T ss_pred cccCCCCCCEEEE-------CcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCC
Confidence 543210 111111 111111111111 121111 222234455677778888888887642 322
Q ss_pred ---CChhHHHHHHHHH-cCcCeEEEccc
Q psy17626 157 ---GSPISIFQKLKRE-LNFTKLCFEQD 180 (184)
Q Consensus 157 ---g~~~~~l~~l~~~-~~~~~v~~n~~ 180 (184)
.+..+.+.++.++ ..+++||+..|
T Consensus 168 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d 195 (291)
T 3egc_A 168 VRADNGRDGAIKVLTGADRPTALLTSSH 195 (291)
T ss_dssp ----CCHHHHHHHHTC-CCCSEEEESSH
T ss_pred CChhHHHHHHHHHHhCCCCCcEEEECCc
Confidence 2334566777654 47899998765
No 44
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=87.19 E-value=7.5 Score=28.86 Aligned_cols=154 Identities=15% Similarity=0.112 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECCh-H---HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGSP-I---SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~~-~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|..+-+..+.+.++++|..+.+...+. . ..+.+.+...+++.|++...... + ...+.+.+.|+++..++
T Consensus 26 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-----~-~~~~~l~~~~iPvV~~~ 99 (292)
T 3k4h_A 26 PFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN-----D-RIIQYLHEQNFPFVLIG 99 (292)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-----C-HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-----h-HHHHHHHHCCCCEEEEC
Confidence 4778888889999999999998876532 2 23444555678999887532111 1 23445567799998876
Q ss_pred Cceeec--ccccccccCCCCchhHHHHHHHhhhc---cccc----cCcchhHHHHHHHHHHHHHHHhCCCeE---EEEeC
Q psy17626 90 SHTLWD--PEVVIQTNGNVPPLTYKMYLHTVSCI---GTMH----IGYNRFRFLLECLADLDRQLKSHGGQL---FIVQG 157 (184)
Q Consensus 90 ~~~L~~--p~~i~~~~~~~~~~v~~~F~~~~~~~---~~~~----~~~~r~~fl~~~L~~L~~~L~~~g~~L---~v~~g 157 (184)
...--. ...|.. ..+..-+...+.+ +..+ .+........+.+.-..+.|++.|+++ .+..+
T Consensus 100 ~~~~~~~~~~~V~~-------D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~ 172 (292)
T 3k4h_A 100 KPYDRKDEITYVDN-------DNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHF 172 (292)
T ss_dssp CCSSCTTTSCEEEC-------CHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEEC
T ss_pred CCCCCCCCCCEEEE-------CcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEec
Confidence 542111 111111 1111111121111 1111 122223344566778888899888763 23333
Q ss_pred C-----hhHHHHHHHHHc-CcCeEEEccc
Q psy17626 158 S-----PISIFQKLKREL-NFTKLCFEQD 180 (184)
Q Consensus 158 ~-----~~~~l~~l~~~~-~~~~v~~n~~ 180 (184)
+ ..+.+.++.++. .+++||+..|
T Consensus 173 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 201 (292)
T 3k4h_A 173 DFSRESGQQAVEELMGLQQPPTAIMATDD 201 (292)
T ss_dssp CSSHHHHHHHHHHHHTSSSCCSEEEESSH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcEEEEcCh
Confidence 2 234566676665 7899998765
No 45
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=86.80 E-value=9.1 Score=29.45 Aligned_cols=73 Identities=12% Similarity=0.057 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChH---HHHHHHHHH-cCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPI---SIFQKLKRE-LNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~-~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
.|..+-+..+++.++++|..+.+... ++. +.+..+.+. .+++.|++.-+.. ....+.+.+.+.||++..
T Consensus 17 ~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~-----~~~~~~~~~~~~giPvV~ 91 (350)
T 3h75_A 17 TFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQY-----VAPQILRLSQGSGIKLFI 91 (350)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSS-----HHHHHHHHHTTSCCEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchh-----hHHHHHHHHHhCCCcEEE
Confidence 47777888888889999999988864 333 346667766 7899998864211 122334455678999998
Q ss_pred ecCc
Q psy17626 88 FVSH 91 (184)
Q Consensus 88 ~~~~ 91 (184)
++..
T Consensus 92 ~~~~ 95 (350)
T 3h75_A 92 VNSP 95 (350)
T ss_dssp EESC
T ss_pred EcCC
Confidence 7654
No 46
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=86.16 E-value=1.5 Score=29.95 Aligned_cols=74 Identities=9% Similarity=-0.084 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEE----EECChHHHHHHHHHHcCcceEEEeecc-cchhHH-HHHHHHHHHHhCCCeEEE
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFI----VQGSPISIFQKLKRELNFTKLCFEQDC-EALWHK-RDKKVKKWCAENNITVKE 87 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v----~~g~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~~-rd~~v~~~l~~~gi~~~~ 87 (184)
.-..+.|.++.+.+++.|.+..+ ..|+|.+.|.+.+++.+++-|+.-..- +...+- .-....+.+....+++..
T Consensus 74 ~~~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLv 153 (155)
T 3dlo_A 74 IEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVIC 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEE
Confidence 34556677788888888887653 349999999999999999999986432 111111 122334455566676654
No 47
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=86.10 E-value=8.6 Score=28.49 Aligned_cols=158 Identities=11% Similarity=0.031 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChH---HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPI---SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.|..+-+..+.+.++++|..+.+... ++. +.+..+ ...+++.|+..-.. ....+ ...+.+.+.||++..+
T Consensus 18 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~---~~~~~-~~~~~~~~~~iPvV~~ 92 (291)
T 3l49_A 18 DWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTL-IAQKPDAIIEQLGN---LDVLN-PWLQKINDAGIPLFTV 92 (291)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHH-HHHCCSEEEEESSC---HHHHH-HHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHH-HHcCCCEEEEeCCC---hhhhH-HHHHHHHHCCCcEEEe
Confidence 47778888999999999999988854 332 233333 34689998875321 11222 2334456679999888
Q ss_pred cCceeecccccccccCCCCch-hHHHHHHHhhh-ccccc----cCcchhHHHHHHHHHHHHHHHhC-CCeEE----EEeC
Q psy17626 89 VSHTLWDPEVVIQTNGNVPPL-TYKMYLHTVSC-IGTMH----IGYNRFRFLLECLADLDRQLKSH-GGQLF----IVQG 157 (184)
Q Consensus 89 ~~~~L~~p~~i~~~~~~~~~~-v~~~F~~~~~~-~~~~~----~~~~r~~fl~~~L~~L~~~L~~~-g~~L~----v~~g 157 (184)
+... ++.+..= +.+.+. .+..-...... .+..+ .+........+.+.-..+.+++. |+++. +..+
T Consensus 93 ~~~~---~~~~~~V-~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~ 168 (291)
T 3l49_A 93 DTAT---PHAINNT-TSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVI 168 (291)
T ss_dssp SCCC---TTCSEEE-EECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCS
T ss_pred cCCC---CCcCceE-ecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCC
Confidence 6542 1111110 000111 11111111111 11111 12222334455677788888887 45421 1122
Q ss_pred -----ChhHHHHHHHHHc----CcCeEEEccc
Q psy17626 158 -----SPISIFQKLKREL----NFTKLCFEQD 180 (184)
Q Consensus 158 -----~~~~~l~~l~~~~----~~~~v~~n~~ 180 (184)
...+.+.++.+++ +++.||+..|
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d 200 (291)
T 3l49_A 169 PNTIQSAYSNVTDMLTKYPNEGDVGAIWACWD 200 (291)
T ss_dssp SSHHHHHHHHHHHHHHHCCSTTSCCEEEESSH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCCcCEEEECCC
Confidence 1234677777776 5999998765
No 48
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=85.54 E-value=8.8 Score=28.09 Aligned_cols=159 Identities=11% Similarity=-0.011 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEE----CChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQ----GSPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~----g~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
.|..+-+..+.+.++++|..+.+.. +++.. .+..+.+..+++.|+....-. ...+ ...+.+.+.|+++.
T Consensus 13 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~---~~~~-~~~~~~~~~~ipvV 88 (276)
T 3ksm_A 13 AYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSA---EDLT-PSVAQYRARNIPVL 88 (276)
T ss_dssp THHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSST---TTTH-HHHHHHHHTTCCEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCH---HHHH-HHHHHHHHCCCcEE
Confidence 3777778888899999999998875 34432 455555543399998864211 1112 22334567799999
Q ss_pred EecCceeecc--cccccccCCCCch-hHHHHHHHhhhc---cccc----cCcchhHHHHHHHHHHHHHHHhC-CCeEEE-
Q psy17626 87 EFVSHTLWDP--EVVIQTNGNVPPL-TYKMYLHTVSCI---GTMH----IGYNRFRFLLECLADLDRQLKSH-GGQLFI- 154 (184)
Q Consensus 87 ~~~~~~L~~p--~~i~~~~~~~~~~-v~~~F~~~~~~~---~~~~----~~~~r~~fl~~~L~~L~~~L~~~-g~~L~v- 154 (184)
.++...--+. ..+..+ .+. .+..-......+ +..+ .+..........+.-..+.+++. |+++..
T Consensus 89 ~~~~~~~~~~~~~~V~~d----~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~ 164 (276)
T 3ksm_A 89 VVDSDLAGDAHQGLVATD----NYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAA 164 (276)
T ss_dssp EESSCCSSSCSSEEEECC----HHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEEC
T ss_pred EEecCCCCCCcceEEccC----HHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 8865431110 011111 111 111111111111 1111 12222344556777788888888 776542
Q ss_pred EeC--C---hhHHHHHHHHHc-CcCeEEEccc
Q psy17626 155 VQG--S---PISIFQKLKREL-NFTKLCFEQD 180 (184)
Q Consensus 155 ~~g--~---~~~~l~~l~~~~-~~~~v~~n~~ 180 (184)
..+ + ..+.+.++.+++ .++.||+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 196 (276)
T 3ksm_A 165 PYAGDDRGAARSEMLRLLKETPTIDGLFTPNE 196 (276)
T ss_dssp CBCCSSHHHHHHHHHHHHHHCSCCCEEECCSH
T ss_pred ecCCCcHHHHHHHHHHHHHhCCCceEEEECCc
Confidence 222 1 234566777776 7899998755
No 49
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=85.39 E-value=2.7 Score=29.04 Aligned_cols=72 Identities=10% Similarity=-0.000 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCeE--EEEECChHHHHHHHHHHcCcceEEEeeccc-chhHHH-HHHHHHHHHhCCCeEEEec
Q psy17626 18 ECLADLDRQLKSHGGQL--FIVQGSPISIFQKLKRELNFTKLCFEQDCE-ALWHKR-DKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L--~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~-~~~~~r-d~~v~~~l~~~gi~~~~~~ 89 (184)
+.|..+.+.+...|++. .+..|++.+.|.+.+++.+++.|++-..-. ...+-. -....+.+....+++..+.
T Consensus 87 ~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~pVlvv~ 162 (175)
T 2gm3_A 87 HLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIK 162 (175)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCCEEEEc
Confidence 45666666677778764 577899999999999999999999875422 111111 1233455666778887543
No 50
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=84.92 E-value=4 Score=27.46 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhcCC---eEEEEE-CChHHHHHHH-HHHcCcceEEEeecccc-hhHHHHHHHHHHHHhCCCeEEE
Q psy17626 15 FLLECLADLDRQLKSHGG---QLFIVQ-GSPISIFQKL-KRELNFTKLCFEQDCEA-LWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~---~L~v~~-g~~~~~l~~l-~~~~~~~~v~~~~~~~~-~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
-..+.|..+.+.+.+.|+ ...+.. |++.+.|.+. +++.+++-|+.-..-.. ..+-.-....+.+....+++..
T Consensus 76 ~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~~~~Gs~~~~vl~~a~~PVlv 154 (156)
T 3fg9_A 76 HVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHSKIAGAIGPRLARKAPISVIV 154 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTSSSCSCHHHHHHHHCSSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccceeecchHHHHHHhCCCCEEE
Confidence 345667777777777787 356778 9999999998 99999999998754221 1111112234455566677654
No 51
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=84.34 E-value=2.1 Score=29.42 Aligned_cols=74 Identities=16% Similarity=0.097 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhcCCe--E--EEEECChHHHHHHHHHHcCcceEEEeecc-cchhHH-HHHHHHHHHHhCCCeEEEec
Q psy17626 16 LLECLADLDRQLKSHGGQ--L--FIVQGSPISIFQKLKRELNFTKLCFEQDC-EALWHK-RDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~--L--~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~~-rd~~v~~~l~~~gi~~~~~~ 89 (184)
..+.|..+.+.+...|++ . .+..|++.+.|.+.+++.+++.|+.-..- ....+. .-....+.+...++++..+.
T Consensus 76 ~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~ 155 (170)
T 2dum_A 76 ASRKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIK 155 (170)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEc
Confidence 344566666666666764 4 67789999999999999999999987542 211111 11234455666788887654
No 52
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=83.65 E-value=4.9 Score=30.22 Aligned_cols=135 Identities=10% Similarity=0.055 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHcCcceEEEeecc-cchhHHHHHHHHHHHHhCCCeEEEecCceeecccccccccCCCCc-------hhHH
Q psy17626 41 PISIFQKLKRELNFTKLCFEQDC-EALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPP-------LTYK 112 (184)
Q Consensus 41 ~~~~l~~l~~~~~~~~v~~~~~~-~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~~~~~~-------~v~~ 112 (184)
+.+...+.+++.|++.|=..... .......-+.+++.+++.|+++....+ ++..+... . .-+ ..+.
T Consensus 18 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~----~~~~~~l~-~-~d~~~r~~~~~~~~ 91 (294)
T 3vni_A 18 DYKYYIEKVAKLGFDILEIAASPLPFYSDIQINELKACAHGNGITLTVGHG----PSAEQNLS-S-PDPDIRKNAKAFYT 91 (294)
T ss_dssp CHHHHHHHHHHHTCSEEEEESTTGGGCCHHHHHHHHHHHHHTTCEEEEEEC----CCGGGCTT-C-SCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEecCcccCCcCHHHHHHHHHHHHHcCCeEEEeec----CCCCcCCC-C-CCHHHHHHHHHHHH
Confidence 45555666677788877554321 111233345778888888888776221 11111110 0 011 1122
Q ss_pred HHHHHhhhcccccc--------C------c---chhHHHHHHHHHHHHHHHhCCCeEEEEeC--------ChhHHHHHHH
Q psy17626 113 MYLHTVSCIGTMHI--------G------Y---NRFRFLLECLADLDRQLKSHGGQLFIVQG--------SPISIFQKLK 167 (184)
Q Consensus 113 ~F~~~~~~~~~~~~--------~------~---~r~~fl~~~L~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~ 167 (184)
........++.+.. + . ..+..+.++|..+....++.|+.|.+-.- ...+.+.+++
T Consensus 92 ~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~~~~~~~~~~~~l~ 171 (294)
T 3vni_A 92 DLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVDFCLEVLNRFENYLINTAQEGVDFV 171 (294)
T ss_dssp HHHHHHHHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCTTTCSSCCSHHHHHHHH
T ss_pred HHHHHHHHhCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCcccCcccCCHHHHHHHH
Confidence 22333333332111 0 1 12355678888888888899998887632 2355677888
Q ss_pred HHcCcCeEEEcccc
Q psy17626 168 RELNFTKLCFEQDC 181 (184)
Q Consensus 168 ~~~~~~~v~~n~~~ 181 (184)
++.+-..|-..-|.
T Consensus 172 ~~v~~~~vg~~~D~ 185 (294)
T 3vni_A 172 KQVDHNNVKVMLDT 185 (294)
T ss_dssp HHHCCTTEEEEEEH
T ss_pred HHcCCCCEEEEEEh
Confidence 88877666665554
No 53
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=83.15 E-value=1.7 Score=31.72 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=41.8
Q ss_pred HHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 23 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 23 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+=+.|++.|+++.|..|++...+..+++..+++.++... .+ .-..++.++++.|+
T Consensus 84 ~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~~--k~----K~~~l~~~~~~lg~ 138 (211)
T 3ij5_A 84 GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQ--SD----KLVAYHELLATLQC 138 (211)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEECSC--SS----HHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhccc--CC----hHHHHHHHHHHcCc
Confidence 446677889999999999999999999999999887654 11 12355666666565
No 54
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=82.73 E-value=1.9 Score=30.95 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=40.1
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+.|++.|+++.|+.|++...+..++++.+++.++... ...-..++.++++.|+
T Consensus 62 ~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~~------k~k~~~~~~~~~~~~~ 114 (195)
T 3n07_A 62 KALMNAGIEIAIITGRRSQIVENRMKALGISLIYQGQ------DDKVQAYYDICQKLAI 114 (195)
T ss_dssp HHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEECSC------SSHHHHHHHHHHHHCC
T ss_pred HHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeCC------CCcHHHHHHHHHHhCC
Confidence 4567789999999999999999999999999887654 1122355566666565
No 55
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=82.57 E-value=14 Score=28.21 Aligned_cols=148 Identities=11% Similarity=0.114 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGSPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
.|..+-+..+.+.+++.|..+.+...+..+ .+.+.+...+++.|+.... .+.+.+.|+++..++.
T Consensus 77 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~------------~~~~~~~~iPvV~~~~ 144 (333)
T 3jvd_A 77 EYYSESLQTIQQDLKAAGYQMLVAEANSVQAQDVVMESLISIQAAGIIHVPV------------VGSIAPEGIPMVQLTR 144 (333)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHHHHTCSEEEECCC------------TTCCC-CCSCEEEECC
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHHHhCCCCEEEEcch------------HHHHhhCCCCEEEECc
Confidence 477788888888999999998887644222 2333344568888887643 1223456899887765
Q ss_pred ceeec-ccccccccCCCCchhHHHHHHHhhhc---cccc----cCcchhHHHHHHHHHHHHHHHhCCCeEEEEe-CC---
Q psy17626 91 HTLWD-PEVVIQTNGNVPPLTYKMYLHTVSCI---GTMH----IGYNRFRFLLECLADLDRQLKSHGGQLFIVQ-GS--- 158 (184)
Q Consensus 91 ~~L~~-p~~i~~~~~~~~~~v~~~F~~~~~~~---~~~~----~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~-g~--- 158 (184)
..--+ ...+. ...+..-+...+.+ +-.+ .++.......+.++-..+.|++.|++ .+.. ++
T Consensus 145 ~~~~~~~~~V~-------~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~-~~~~~~~~~~ 216 (333)
T 3jvd_A 145 GELGPGFPRVL-------CDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAE-VTFHFGHYSV 216 (333)
T ss_dssp ----CCSCEEE-------ECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE-EEEEECCSSH
T ss_pred cCCCCCCCEEE-------EChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC-EEEecCCCCH
Confidence 32110 11111 11122222222222 1111 12222334556778888899999998 4444 32
Q ss_pred --hhHHHHHHHHHcCcCeEEEcccc
Q psy17626 159 --PISIFQKLKRELNFTKLCFEQDC 181 (184)
Q Consensus 159 --~~~~l~~l~~~~~~~~v~~n~~~ 181 (184)
..+.+.++.++..+++||+..|.
T Consensus 217 ~~~~~~~~~ll~~~~~~ai~~~nd~ 241 (333)
T 3jvd_A 217 ESGEEMAQVVFNNGLPDALIVASPR 241 (333)
T ss_dssp HHHHHHHHHHHHTCCCSEEEECCHH
T ss_pred HHHHHHHHHHhcCCCCcEEEECCHH
Confidence 23456777777779999987663
No 56
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=82.48 E-value=2.5 Score=29.60 Aligned_cols=54 Identities=20% Similarity=0.418 Sum_probs=39.2
Q ss_pred HHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 23 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 23 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+=+.|++.|+++.|+.|++...+..+++..+++ ++... . ..-..++.++++.|+
T Consensus 47 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgi~-~~~~~--~----~k~~~l~~~~~~~~~ 100 (176)
T 3mmz_A 47 GIAALRKSGLTMLILSTEQNPVVAARARKLKIP-VLHGI--D----RKDLALKQWCEEQGI 100 (176)
T ss_dssp HHHHHHHTTCEEEEEESSCCHHHHHHHHHHTCC-EEESC--S----CHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCeEEEEECcChHHHHHHHHHcCCe-eEeCC--C----ChHHHHHHHHHHcCC
Confidence 445677889999999999999999999999999 54432 1 122355556666564
No 57
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=82.34 E-value=15 Score=28.18 Aligned_cols=154 Identities=11% Similarity=0.001 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC--ChHHH--HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQG--SPISI--FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~~--l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
|..+-+..+.+.++++|..+.+... ++... +.+.+...+++.|++..... .. ...+.+.+.|+++..+++
T Consensus 82 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~-~~-----~~~~~l~~~~iPvV~i~~ 155 (344)
T 3kjx_A 82 VFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEH-SE-----AARAMLDAAGIPVVEIMD 155 (344)
T ss_dssp SHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC-CH-----HHHHHHHHCSSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCC-CH-----HHHHHHHhCCCCEEEEeC
Confidence 6677788899999999999988754 33322 22233346889888753211 11 234456678999988753
Q ss_pred ceeeccc-ccccccCCCCchhHHHHHHHhhh---cccccc----Ccc-hhHHHHHHHHHHHHHHHhCCCeE---EEEeCC
Q psy17626 91 HTLWDPE-VVIQTNGNVPPLTYKMYLHTVSC---IGTMHI----GYN-RFRFLLECLADLDRQLKSHGGQL---FIVQGS 158 (184)
Q Consensus 91 ~~L~~p~-~i~~~~~~~~~~v~~~F~~~~~~---~~~~~~----~~~-r~~fl~~~L~~L~~~L~~~g~~L---~v~~g~ 158 (184)
..--+.. .+..+ .+..-+...+. .+-.+. ++. ......+.+.-..+.|++.|+++ .+..++
T Consensus 156 ~~~~~~~~~V~~D-------~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 228 (344)
T 3kjx_A 156 SDGKPVDAMVGIS-------HRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGG 228 (344)
T ss_dssp CSSCCSSEEEEEC-------HHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSC
T ss_pred CCCCCCCCEEEEC-------cHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCC
Confidence 2111110 12111 11111111111 111111 111 11344566777888999988764 333332
Q ss_pred -----hhHHHHHHHHHc-CcCeEEEcccc
Q psy17626 159 -----PISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 159 -----~~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
..+.+.++.++. .+++||+..|.
T Consensus 229 ~~~~~~~~~~~~ll~~~~~~~ai~~~nd~ 257 (344)
T 3kjx_A 229 SALAKGREMTQAMLERSPDLDFLYYSNDM 257 (344)
T ss_dssp CCHHHHHHHHHHHHHHSTTCCEEEESSHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEECCHH
Confidence 234667777766 89999987653
No 58
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=82.05 E-value=2 Score=30.48 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=41.8
Q ss_pred HHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 23 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 23 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+=+.|++.|+++.|..|++...+..+++..+++.++... ..+ -+.+..++++.|+
T Consensus 54 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~~-----~~K-~~~~~~~~~~~g~ 108 (189)
T 3mn1_A 54 GIKMLIASGVTTAIISGRKTAIVERRAKSLGIEHLFQGR-----EDK-LVVLDKLLAELQL 108 (189)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCSEEECSC-----SCH-HHHHHHHHHHHTC
T ss_pred HHHHHHHCCCEEEEEECcChHHHHHHHHHcCCHHHhcCc-----CCh-HHHHHHHHHHcCC
Confidence 445677889999999999999999999999999887654 111 1466666666665
No 59
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=82.01 E-value=7.1 Score=25.88 Aligned_cols=71 Identities=10% Similarity=0.007 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCC---eEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHH-HHHHHHHHHhCCCeEEEe
Q psy17626 18 ECLADLDRQLKSHGG---QLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR-DKKVKKWCAENNITVKEF 88 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~---~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~r-d~~v~~~l~~~gi~~~~~ 88 (184)
+....|++-.++.|. ...+..|++.+.|.+.+++.+++-|+.-..-....... -....+.+....+++..+
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 71 VEKQKLSQIGNTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAV 145 (150)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC--------CCCHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHHHHHcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcCeEecchHHHHHHhCCCCEEEE
Confidence 333334333344454 47888999999999999999999999875321111111 122345566667887654
No 60
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=81.97 E-value=4.7 Score=26.39 Aligned_cols=45 Identities=11% Similarity=0.236 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhcCCe--EEEEECChHHHHHHHHHHcCcceEEEeec
Q psy17626 16 LLECLADLDRQLKSHGGQ--LFIVQGSPISIFQKLKRELNFTKLCFEQD 62 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~--L~v~~g~~~~~l~~l~~~~~~~~v~~~~~ 62 (184)
..+.|..+.+.+.+.|++ ..+..|++.+.|.+.++ +++-|+.-..
T Consensus 64 ~~~~l~~~~~~~~~~g~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~ 110 (138)
T 3idf_A 64 AKLLTQKFSTFFTEKGINPFVVIKEGEPVEMVLEEAK--DYNLLIIGSS 110 (138)
T ss_dssp HHHHHHHHHHHHHTTTCCCEEEEEESCHHHHHHHHHT--TCSEEEEECC
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEecCChHHHHHHHHh--cCCEEEEeCC
Confidence 345667777777777766 67789999999999999 9999988753
No 61
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=81.89 E-value=14 Score=27.47 Aligned_cols=152 Identities=13% Similarity=-0.051 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC--Ch---HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQG--SP---ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g--~~---~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
|..+-+..+.+.+++.|..+.+... ++ .+.+.. +...+++.|+...... .. ..+ +.+.+.|+++..++
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~-l~~~~vdgiIi~~~~~-~~----~~~-~~l~~~~iPvV~~~ 94 (287)
T 3bbl_A 22 ILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDL-IRSGNVDGFVLSSINY-ND----PRV-QFLLKQKFPFVAFG 94 (287)
T ss_dssp THHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHH-HHTTCCSEEEECSCCT-TC----HHH-HHHHHTTCCEEEES
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHH-HHcCCCCEEEEeecCC-Cc----HHH-HHHHhcCCCEEEEC
Confidence 6777788888899999999887642 22 233444 4456899888753211 11 223 33456799998876
Q ss_pred Cceee-cccccccccCCCCchhHHHHHHHhh---hcccccc----CcchhHHHHHHHHHHHHHHHhCCCeEE---EEeCC
Q psy17626 90 SHTLW-DPEVVIQTNGNVPPLTYKMYLHTVS---CIGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLF---IVQGS 158 (184)
Q Consensus 90 ~~~L~-~p~~i~~~~~~~~~~v~~~F~~~~~---~~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~---v~~g~ 158 (184)
...-- ....+..+ .+..-+...+ +.+-.+. +........+.+.-..+.|++.|+++. +..++
T Consensus 95 ~~~~~~~~~~V~~D-------~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~ 167 (287)
T 3bbl_A 95 RSNPDWDFAWVDID-------GTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGE 167 (287)
T ss_dssp CCSTTCCCCEEEEC-------HHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECC
T ss_pred CcCCCCCCCEEEec-------cHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCC
Confidence 53210 00111111 1111111111 1121111 122223445667778888888887542 34432
Q ss_pred --h---hHHHHHHHH-Hc--CcCeEEEccc
Q psy17626 159 --P---ISIFQKLKR-EL--NFTKLCFEQD 180 (184)
Q Consensus 159 --~---~~~l~~l~~-~~--~~~~v~~n~~ 180 (184)
. .+.+.++.+ +. .+++||+..|
T Consensus 168 ~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d 197 (287)
T 3bbl_A 168 GTFEVGRAMTLHLLDLSPERRPTAIMTLND 197 (287)
T ss_dssp SSHHHHHHHHHHHHTSCTTTSCSEEEESSH
T ss_pred CCHHHHHHHHHHHHhhCCCCCCcEEEECCc
Confidence 2 245667776 54 6899998765
No 62
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=81.69 E-value=4.8 Score=28.80 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
.....++-+.|++.|+++.|+.+.+...+..+++.+|++.++.+.
T Consensus 94 ~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~~~~~~~ 138 (232)
T 3fvv_A 94 TVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATD 138 (232)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCCEEEECE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEcc
Confidence 345556667788889999999999999999999999999887653
No 63
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=81.02 E-value=14 Score=26.97 Aligned_cols=156 Identities=15% Similarity=0.102 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC--hHH--HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGS--PIS--IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~--~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|..+-+..+.+.++++|..+.+...+ +.. .+.+.+...+++.|+....... . + ...+.+.+.|+++..++
T Consensus 15 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~---~-~~~~~~~~~~iPvV~~~ 89 (272)
T 3o74_A 15 PSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPP-E---D-DSYRELQDKGLPVIAID 89 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCS-S---C-CHHHHHHHTTCCEEEES
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCccc-c---H-HHHHHHHHcCCCEEEEc
Confidence 477778888999999999999888643 322 2333344568998888643211 1 1 12234566799998876
Q ss_pred CceeecccccccccCCCCchhHHHHHHHhhhc---ccccc----CcchhHHHHHHHHHHHHHHHhCCCeEEEEe-C--Ch
Q psy17626 90 SHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI---GTMHI----GYNRFRFLLECLADLDRQLKSHGGQLFIVQ-G--SP 159 (184)
Q Consensus 90 ~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~---~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~-g--~~ 159 (184)
...- ...+..= ....+..-+...+.+ +..+. +........+.+.-..+.+++.|++..... + +.
T Consensus 90 ~~~~--~~~~~~V----~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~ 163 (272)
T 3o74_A 90 RRLD--PAHFCSV----ISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGYTGEVRRYQGEAFSR 163 (272)
T ss_dssp SCCC--TTTCEEE----EECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEEEEESSSSH
T ss_pred cCCC--ccccCEE----EEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChheeecCCCCH
Confidence 5321 1111000 011111111121111 21111 222233456677888889999998765443 2 22
Q ss_pred ---hHHHHHHHHHcC--cCeEEEccc
Q psy17626 160 ---ISIFQKLKRELN--FTKLCFEQD 180 (184)
Q Consensus 160 ---~~~l~~l~~~~~--~~~v~~n~~ 180 (184)
.+.+.++.+++. +++||+..+
T Consensus 164 ~~~~~~~~~~l~~~~~~~~ai~~~~d 189 (272)
T 3o74_A 164 ECGQRLMQQLIDDLGGLPDALVTTSY 189 (272)
T ss_dssp HHHHHHHHHHHHHHTSCCSEEEESSH
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEeCc
Confidence 346777777775 999998765
No 64
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=80.26 E-value=11 Score=25.41 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCe
Q psy17626 22 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~ 84 (184)
++=+.|++.|.++.|+.|.+...+..+++..++...+-.. ......+...+++.|+.
T Consensus 43 ~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~------kp~~~~~~~~~~~~~~~ 99 (162)
T 2p9j_A 43 IGIKLLQKMGITLAVISGRDSAPLITRLKELGVEEIYTGS------YKKLEIYEKIKEKYSLK 99 (162)
T ss_dssp HHHHHHHTTTCEEEEEESCCCHHHHHHHHHTTCCEEEECC--------CHHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCHhhccCC------CCCHHHHHHHHHHcCCC
Confidence 4445567789999999999999999999999998655331 12233555666666653
No 65
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=80.11 E-value=16 Score=27.28 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCCe--EEEEECChHHHHHHHHHHcCcceEEEeecc-cchhHH-HHHHHHHHHHhCCCeEEEec
Q psy17626 18 ECLADLDRQLKSHGGQ--LFIVQGSPISIFQKLKRELNFTKLCFEQDC-EALWHK-RDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~--L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~~-rd~~v~~~l~~~gi~~~~~~ 89 (184)
+.+.++.+.|++.|++ ..+..|++.+.|.+.+++.+++-|++-..- +...+- .-...++.+....+++..+.
T Consensus 214 ~~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~ 289 (294)
T 3loq_A 214 ADLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCK 289 (294)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEEC
Confidence 4566777778777875 566789999999999999999988886432 221111 12233455666778776543
No 66
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=79.53 E-value=17 Score=27.09 Aligned_cols=156 Identities=11% Similarity=0.029 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEECC---hHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 12 RFRFLLECLADLDRQLKSHGGQLFIVQGS---PISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 12 r~~fl~~sL~~L~~~L~~~g~~L~v~~g~---~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
...|..+-+..+.+.++++|..+.+...+ ....+.+++...+++.|+........ ...+.+.+.|+++..+
T Consensus 21 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~------~~~~~l~~~~iPvV~~ 94 (294)
T 3qk7_A 21 NNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED------FRLQYLQKQNFPFLAL 94 (294)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC------HHHHHHHHTTCCEEEE
T ss_pred cChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh------HHHHHHHhCCCCEEEE
Confidence 34588888899999999999999887643 23456677777889998886432211 2234456779999987
Q ss_pred cCceeec-ccccccccCCCCchhHHHHHHHhhh---cccccc----CcchhHHHHHHHHHHHHHHHhCCCeEE---EEeC
Q psy17626 89 VSHTLWD-PEVVIQTNGNVPPLTYKMYLHTVSC---IGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLF---IVQG 157 (184)
Q Consensus 89 ~~~~L~~-p~~i~~~~~~~~~~v~~~F~~~~~~---~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~---v~~g 157 (184)
+...--+ ...|.. ..+..-+...+. .+-.+. ++.......+.+.-..+.|++.|+++. +..+
T Consensus 95 ~~~~~~~~~~~V~~-------D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 167 (294)
T 3qk7_A 95 GRSHLPKPYAWFDF-------DNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKA 167 (294)
T ss_dssp SCCCCSSCCEEEEE-------CHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEE
T ss_pred CCCCCCCCCCEEEc-------ChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecC
Confidence 6541110 011111 111111111111 111111 222233445667888888999887632 3332
Q ss_pred C-----hhHHHHHHHHH-cCcCeEEEccc
Q psy17626 158 S-----PISIFQKLKRE-LNFTKLCFEQD 180 (184)
Q Consensus 158 ~-----~~~~l~~l~~~-~~~~~v~~n~~ 180 (184)
+ ..+.+.++.++ ..+++||+..|
T Consensus 168 ~~~~~~~~~~~~~~l~~~~~~~ai~~~nd 196 (294)
T 3qk7_A 168 DPTRPGGYLAASRLLALEVPPTAIITDCN 196 (294)
T ss_dssp CSSHHHHHHHHHHHHHSSSCCSEEEESSH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcEEEECCH
Confidence 2 23466677765 47999998765
No 67
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=78.92 E-value=6.6 Score=26.87 Aligned_cols=109 Identities=10% Similarity=0.075 Sum_probs=59.4
Q ss_pred CcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCceeecccccccccCCCCchhHHHHHHHhhhccccccCcchhH
Q psy17626 53 NFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFR 132 (184)
Q Consensus 53 ~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~~~~~~~~~r~~ 132 (184)
....|.+--|..+....--+...+..+ .|.+++.++.+.+ ++..... +...+ ...+.. ....
T Consensus 16 ~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~-~~~~~~~--~~~~~---------~~~~~~-----~~~~ 77 (163)
T 1tq8_A 16 AYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLP-QHEDARA--ADILK---------DESYKV-----TGTA 77 (163)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC-------------------------------------CC
T ss_pred cCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeec-cCccccc--ccccc---------cHHHHH-----HHHH
Confidence 356777777766665444444445555 6777776632222 2211100 00000 000100 0011
Q ss_pred HHHHHHHHHHHHHHhCCCe---EEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 133 FLLECLADLDRQLKSHGGQ---LFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 133 fl~~~L~~L~~~L~~~g~~---L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
-..+.|+++.+.+.+.|++ ..+..|++.+.|.+++++.+++-|+...
T Consensus 78 ~~~~~l~~~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~ 127 (163)
T 1tq8_A 78 PIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGN 127 (163)
T ss_dssp THHHHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECC
Confidence 1345566777777777876 4566799999999999999999998754
No 68
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=78.82 E-value=19 Score=27.37 Aligned_cols=156 Identities=17% Similarity=0.129 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHHH--HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPISI--FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~~--l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|..+-+..+.+.++++|..+.+... ++... +.+.+...+++.|+..-.... +..+.+.+++.|+++..++
T Consensus 76 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-----~~~~~~~~~~~~iPvV~~~ 150 (338)
T 3dbi_A 76 IYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-----VDEIDDIIDAHSQPIMVLN 150 (338)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSC-----HHHHHHHHHHCSSCEEEES
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-----hHHHHHHHHcCCCCEEEEc
Confidence 47788888999999999999988864 33322 333444568999888642211 1345566677899988776
Q ss_pred Cceeecc-cccccccCCCCchhHHHHHHHhh---hccccc----cCcchhHHHHHHHHHHHHHHHhCCCeEE---EEeCC
Q psy17626 90 SHTLWDP-EVVIQTNGNVPPLTYKMYLHTVS---CIGTMH----IGYNRFRFLLECLADLDRQLKSHGGQLF---IVQGS 158 (184)
Q Consensus 90 ~~~L~~p-~~i~~~~~~~~~~v~~~F~~~~~---~~~~~~----~~~~r~~fl~~~L~~L~~~L~~~g~~L~---v~~g~ 158 (184)
...--+. ..+.. ..+..-+...+ +.+-.+ .++.......+.+.-..+.|++.|+++. +..++
T Consensus 151 ~~~~~~~~~~V~~-------D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 223 (338)
T 3dbi_A 151 RRLRKNSSHSVWC-------DHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGK 223 (338)
T ss_dssp SCCSSSGGGEECB-------CHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCC
T ss_pred CCCCCCCCCEEEE-------ChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCC
Confidence 4321110 11111 11111111111 112111 1222233445667778888998887642 44432
Q ss_pred h-----hHHHHHHHHH-cCcCeEEEcccc
Q psy17626 159 P-----ISIFQKLKRE-LNFTKLCFEQDC 181 (184)
Q Consensus 159 ~-----~~~l~~l~~~-~~~~~v~~n~~~ 181 (184)
. .+.+.++.+. ..+++||+..|.
T Consensus 224 ~~~~~~~~~~~~ll~~~~~~~ai~~~nd~ 252 (338)
T 3dbi_A 224 WTPASGAEGVEMLLERGAKFSALVASNDD 252 (338)
T ss_dssp SSHHHHHHHHHHHHHTTCCCSEEEESSHH
T ss_pred CCHHHHHHHHHHHHcCCCCCeEEEECChH
Confidence 2 2456666654 479999987653
No 69
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=77.67 E-value=4.7 Score=26.08 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcC----cceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN----FTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~----~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+...+.++-+.|++.|.++.+..+.+...+..+.+..+ ++.++...+... .+--.......+++.|+
T Consensus 19 ~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~-~Kp~~~~~~~~~~~~~~ 89 (137)
T 2pr7_A 19 DQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNGVVDKVLLSGELGV-EKPEEAAFQAAADAIDL 89 (137)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHTTSSSEEEEHHHHSC-CTTSHHHHHHHHHHTTC
T ss_pred cCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChHhhccEEEEeccCCC-CCCCHHHHHHHHHHcCC
Confidence 45666777778888999999999876665555555543 345665543221 11111234445565564
No 70
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=77.20 E-value=8.2 Score=26.01 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCCe--EEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 135 LECLADLDRQLKSHGGQ--LFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~--L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
.+.|+.+.+.+...|++ ..+..|++.+.|.+.+++.+++-|+...
T Consensus 82 ~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~ 128 (162)
T 1mjh_A 82 KNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGS 128 (162)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEES
T ss_pred HHHHHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcC
Confidence 44566777777777876 4456799999999999999999988753
No 71
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=76.38 E-value=3.9 Score=27.82 Aligned_cols=63 Identities=16% Similarity=0.119 Sum_probs=43.0
Q ss_pred HHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCe---EEEecCce
Q psy17626 24 DRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNIT---VKEFVSHT 92 (184)
Q Consensus 24 ~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~---~~~~~~~~ 92 (184)
-+.|++.|.++.|+.|.+......+++..++..++... .| .-..++..+++.|+. +..+.|+.
T Consensus 40 l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~~~--kp----k~~~~~~~~~~~~~~~~~~~~vGD~~ 105 (164)
T 3e8m_A 40 IFWAHNKGIPVGILTGEKTEIVRRRAEKLKVDYLFQGV--VD----KLSAAEELCNELGINLEQVAYIGDDL 105 (164)
T ss_dssp HHHHHHTTCCEEEECSSCCHHHHHHHHHTTCSEEECSC--SC----HHHHHHHHHHHHTCCGGGEEEECCSG
T ss_pred HHHHHHCCCEEEEEeCCChHHHHHHHHHcCCCEeeccc--CC----hHHHHHHHHHHcCCCHHHEEEECCCH
Confidence 35567789999999999999999999999999877653 11 222444555555652 44444433
No 72
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=76.15 E-value=22 Score=26.48 Aligned_cols=157 Identities=8% Similarity=0.009 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEE---CChHHH---HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQ---GSPISI---FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~---g~~~~~---l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
.|..+-+..+.+.++++|..+.+.. +++... +..+ ...+++.|+..-.... ..+..+ +.+.+.||++..
T Consensus 17 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l-~~~~vdgiIi~~~~~~---~~~~~~-~~~~~~~iPvV~ 91 (305)
T 3g1w_A 17 DYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQA-IAKNPAGIAISAIDPV---ELTDTI-NKAVDAGIPIVL 91 (305)
T ss_dssp THHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHH-HHHCCSEEEECCSSTT---TTHHHH-HHHHHTTCCEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHH-HHhCCCEEEEcCCCHH---HHHHHH-HHHHHCCCcEEE
Confidence 3777778888899999999998842 344433 3333 3468998887532111 112223 334567999988
Q ss_pred ecCceeec--ccccccccCCCCch-hHHHHHHHhhhc-ccccc----CcchhHHHHHHHHHHHHHHHhCCCeEEE---Ee
Q psy17626 88 FVSHTLWD--PEVVIQTNGNVPPL-TYKMYLHTVSCI-GTMHI----GYNRFRFLLECLADLDRQLKSHGGQLFI---VQ 156 (184)
Q Consensus 88 ~~~~~L~~--p~~i~~~~~~~~~~-v~~~F~~~~~~~-~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~v---~~ 156 (184)
++...--. ...+..+ .+. .+..-......+ +..+. ++ ......+.++-+.+.|++.|.++.+ ..
T Consensus 92 ~~~~~~~~~~~~~V~~d----~~~~g~~~~~~l~~~~~g~~~i~~i~~~-~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~ 166 (305)
T 3g1w_A 92 FDSGAPDSHAHSFLGTN----NYNAGMNAAYKMAELLDGEGEVAVITLP-NQLNHQERTTGFKETLEAEFPAIEVIAVED 166 (305)
T ss_dssp ESSCCTTSCCSCEEECC----HHHHHHHHHHHHHHHTTTCEEEEEEECT-TCHHHHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred ECCCCCCCceeEEECcC----HHHHHHHHHHHHHHHhCCCcEEEEEeCC-CcccHHHHHHHHHHHHHhhCCCCEEEEEec
Confidence 76542110 0111111 111 111111111111 11110 12 1234556677788888888776543 23
Q ss_pred CC-----hhHHHHHHHHHc-CcCeEEEccc
Q psy17626 157 GS-----PISIFQKLKREL-NFTKLCFEQD 180 (184)
Q Consensus 157 g~-----~~~~l~~l~~~~-~~~~v~~n~~ 180 (184)
++ ..+.+.++.+++ +++.||+..|
T Consensus 167 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 196 (305)
T 3g1w_A 167 GRGDSLHSRRVAHQLLEDYPNLAGIFATEA 196 (305)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTEEEEEESSH
T ss_pred CCCCHHHHHHHHHHHHHhCCCceEEEECCC
Confidence 32 234566677665 7899998765
No 73
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=76.02 E-value=5.1 Score=30.05 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeC--------ChhHHHHHHHHHcCcCeEEEcccc
Q psy17626 132 RFLLECLADLDRQLKSHGGQLFIVQG--------SPISIFQKLKRELNFTKLCFEQDC 181 (184)
Q Consensus 132 ~fl~~~L~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~~~~~~v~~n~~~ 181 (184)
..+.++|..+....++.|+.|.+-.- ...+.+.+++++.+-..|-..-|.
T Consensus 142 ~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~~~~ll~~v~~~~vg~~~D~ 199 (287)
T 3kws_A 142 DFLCEQFNEMGTFAAQHGTSVIFEPLNRKECFYLRQVADAASLCRDINNPGVRCMGDF 199 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEECCCCTTTCSSCCCHHHHHHHHHHHCCTTEEEEEEH
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCcccCcccCCHHHHHHHHHHcCCCCeeEEeeh
Confidence 45677888888888888998877521 235567778888877767666554
No 74
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=75.96 E-value=7.6 Score=28.97 Aligned_cols=50 Identities=6% Similarity=-0.073 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeC--------ChhHHHHHHHHHcCcCeEEEcccc
Q psy17626 132 RFLLECLADLDRQLKSHGGQLFIVQG--------SPISIFQKLKRELNFTKLCFEQDC 181 (184)
Q Consensus 132 ~fl~~~L~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~~~~~~v~~n~~~ 181 (184)
..+.++|..+.+..++.|+.|.+-.- ...+.+.+++++.+...+-..-|.
T Consensus 129 ~~~~~~l~~l~~~a~~~gv~l~lEn~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~D~ 186 (290)
T 2qul_A 129 DRAIESVRRVIKVAEDYGIIYALEVVNRFEQWLCNDAKEAIAFADAVDSPACKVQLDT 186 (290)
T ss_dssp HHHHHHHHTTHHHHHHHTCEEEEECCCTTTCSSCCSHHHHHHHHHHHCCTTEEEEEEH
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCccccccccCCHHHHHHHHHHcCCCCEEEEEEc
Confidence 45667777777777777888776531 234556677777776666555443
No 75
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=75.93 E-value=6.8 Score=25.60 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=36.7
Q ss_pred eEEEEECChHHHHHHHHHHcCcceEEEeecc-cchhHH-HHHHHHHHHHhCCCeEEE
Q psy17626 33 QLFIVQGSPISIFQKLKRELNFTKLCFEQDC-EALWHK-RDKKVKKWCAENNITVKE 87 (184)
Q Consensus 33 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~~-rd~~v~~~l~~~gi~~~~ 87 (184)
...+..|++.+.|.+.+++.+++.|+.-..- ....+. .-....+.+...++++..
T Consensus 79 ~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlv 135 (137)
T 2z08_A 79 DALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLL 135 (137)
T ss_dssp GEEEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEE
T ss_pred EEEEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEE
Confidence 5678899999999999999999999997542 211111 112334445556676654
No 76
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=75.92 E-value=21 Score=26.30 Aligned_cols=162 Identities=10% Similarity=0.089 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC--hH---HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGS--PI---SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~--~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.|..+-+..+.+.+++.|..+.+...+ +. +.+..+ ...+++.|+..-... .. .. ...+.+.+.||++..+
T Consensus 21 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~~~~~-~~--~~-~~~~~~~~~~iPvV~~ 95 (293)
T 3l6u_A 21 EFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEF-VHLKVDAIFITTLDD-VY--IG-SAIEEAKKAGIPVFAI 95 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHH-HHTTCSEEEEECSCT-TT--TH-HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEecCCh-HH--HH-HHHHHHHHcCCCEEEe
Confidence 477788888999999999999888643 33 233333 346889888853221 11 11 2233455679999988
Q ss_pred cCceeecc--cccccccCCCCchhHHHHHHHh---h-----hccccccCcchhHHHHHHHHHHHHHHHhC-CCeEEE-Ee
Q psy17626 89 VSHTLWDP--EVVIQTNGNVPPLTYKMYLHTV---S-----CIGTMHIGYNRFRFLLECLADLDRQLKSH-GGQLFI-VQ 156 (184)
Q Consensus 89 ~~~~L~~p--~~i~~~~~~~~~~v~~~F~~~~---~-----~~~~~~~~~~r~~fl~~~L~~L~~~L~~~-g~~L~v-~~ 156 (184)
+...--.+ ..+..++...-+..-..+.... . +.... .+..........+.-+.+.+++. |+++.. ..
T Consensus 96 ~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i-~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~ 174 (293)
T 3l6u_A 96 DRMIRSDAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEI-TGTANVYTTNERHRGFLKGIENEPTLSIVDSVS 174 (293)
T ss_dssp SSCCCCTTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEE-ECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEE
T ss_pred cCCCCCCcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEE-ECCCCCchHHHHHHHHHHHHHhCCCcEEeeecc
Confidence 65432111 1121111000111111122211 1 11111 12222344556777888889888 887653 22
Q ss_pred CC--h---hHHHHHHHHHc-CcCeEEEcccc
Q psy17626 157 GS--P---ISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 157 g~--~---~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
++ . .+.+.++.+++ .++.||+..|.
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 205 (293)
T 3l6u_A 175 GNYDPVTSERVMRQVIDSGIPFDAVYCHNDD 205 (293)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCCSEEEESSHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCEEEECCch
Confidence 22 2 23566666664 78999987653
No 77
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=75.87 E-value=19 Score=25.83 Aligned_cols=56 Identities=7% Similarity=-0.034 Sum_probs=33.8
Q ss_pred CCeEEEEECChHHHHHHHHHH----cCcceEEE-eecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 31 GGQLFIVQGSPISIFQKLKRE----LNFTKLCF-EQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 31 g~~L~v~~g~~~~~l~~l~~~----~~~~~v~~-~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
|..|+|-.-.-..+...+++. -+|+.|++ ..+|......- ..-.+.|++.||++..
T Consensus 84 g~TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~d~~~~~p~~-~~g~~~L~~aGI~V~~ 144 (190)
T 2nyt_A 84 NVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEI-QAALKKLKEAGCKLRI 144 (190)
T ss_pred CeEEEEEcChHHHHHHHHHHhhhhcCCccEEEEEeecCCcCChHH-HHHHHHHHHCCCEEEE
Confidence 778887554433444444443 38998888 56664211111 2445667889999884
No 78
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}
Probab=75.56 E-value=14 Score=28.46 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEee
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 61 (184)
...++-+.|++.|.++.|+.|.+...+..+++..+++.++.+.
T Consensus 183 g~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l~~lgl~~~f~~~ 225 (317)
T 4eze_A 183 GLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDYAFSNT 225 (317)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEEC
T ss_pred CHHHHHHHHHhCCCEEEEEeCccHHHHHHHHHHcCCCeEEEEE
Confidence 4556777888899999999999999999999999999877654
No 79
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=75.24 E-value=9.3 Score=27.10 Aligned_cols=63 Identities=16% Similarity=0.052 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc----ceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+.++-+.|++.|.++.++.+.+...+..+.+..++ +.++...+... .+-.-+.+...+++.|+
T Consensus 108 ~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~-~Kp~~~~~~~~~~~lgi 174 (231)
T 3kzx_A 108 AIELLDTLKENNITMAIVSNKNGERLRSEIHHKNLTHYFDSIIGSGDTGT-IKPSPEPVLAALTNINI 174 (231)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEETSSSC-CTTSSHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHCCchhheeeEEcccccCC-CCCChHHHHHHHHHcCC
Confidence 44566777788889988888877777777777764 55555554432 11111244555555565
No 80
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=75.05 E-value=26 Score=26.92 Aligned_cols=155 Identities=12% Similarity=0.041 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHH--HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPIS--IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|+.+-+..+.+.+++.|..+.+... ++.. .+.+.+...+++.|++.-.... + ...+.+.+.|+++..++
T Consensus 83 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-----~-~~~~~l~~~~iPvV~i~ 156 (355)
T 3e3m_A 83 LHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHT-----E-QTIRLLQRASIPIVEIW 156 (355)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCC-----H-HHHHHHHHCCSCEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-----H-HHHHHHHhCCCCEEEEC
Confidence 47778888999999999999988764 3332 2333334568898887532211 1 23345667899999875
Q ss_pred Cceeeccc-ccccccCCCCchhHHHHHHHhhh---cccccc----Ccchh-HHHHHHHHHHHHHHHhCCCeEE---EE-e
Q psy17626 90 SHTLWDPE-VVIQTNGNVPPLTYKMYLHTVSC---IGTMHI----GYNRF-RFLLECLADLDRQLKSHGGQLF---IV-Q 156 (184)
Q Consensus 90 ~~~L~~p~-~i~~~~~~~~~~v~~~F~~~~~~---~~~~~~----~~~r~-~fl~~~L~~L~~~L~~~g~~L~---v~-~ 156 (184)
+..--+.. .+..+ .+..-+...+. .+-.+. +.... ....+.+.-..+.|++.|++.. +. .
T Consensus 157 ~~~~~~~~~~V~~D-------~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 229 (355)
T 3e3m_A 157 EKPAHPIGHTVGFS-------NERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGA 229 (355)
T ss_dssp SCCSSCSSEEEECC-------HHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESC
T ss_pred CccCCCCCCEEEeC-------hHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEec
Confidence 43211111 12111 11111111111 111111 11111 1144567778888888887643 22 2
Q ss_pred CC-----hhHHHHHHHHHc-CcCeEEEcccc
Q psy17626 157 GS-----PISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 157 g~-----~~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
++ ..+.+.++.++. .+++||+..|.
T Consensus 230 ~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~ 260 (355)
T 3e3m_A 230 PPLSIEDGVAAAELILQEYPDTDCIFCVSDM 260 (355)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCCEEEESSHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCCcEEEECChH
Confidence 22 234666776664 79999987653
No 81
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=74.87 E-value=7.8 Score=25.51 Aligned_cols=46 Identities=9% Similarity=0.144 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhCCC---eEEEEeCChhHHHHH-HHHHcCcCeEEEcc
Q psy17626 134 LLECLADLDRQLKSHGG---QLFIVQGSPISIFQK-LKRELNFTKLCFEQ 179 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~---~L~v~~g~~~~~l~~-l~~~~~~~~v~~n~ 179 (184)
..+.|+.+.+.+.+.|+ ...+..|++.+.+.+ .+++.+++-|+...
T Consensus 67 ~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~ 116 (146)
T 3s3t_A 67 AKDAMRQRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGA 116 (146)
T ss_dssp HHHHHHHHHHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEES
T ss_pred HHHHHHHHHHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECC
Confidence 44567777788887777 466778999999999 99999999998753
No 82
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=74.82 E-value=10 Score=26.63 Aligned_cols=44 Identities=7% Similarity=0.074 Sum_probs=39.6
Q ss_pred EECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHh
Q psy17626 37 VQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAE 80 (184)
Q Consensus 37 ~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~ 80 (184)
+.|+..+.++..+...++.+.+.|.|.+...+..|.....++.-
T Consensus 88 ilGdi~~tL~~~~~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsp 131 (174)
T 3iht_A 88 ILGDIRETLPATLERFGATASLVHADLGGHNREKNDRFARLISP 131 (174)
T ss_dssp EESCHHHHHHHHHHHHCSCEEEEEECCCCSCHHHHHHHHHHHHH
T ss_pred ecccHHHHHHHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhH
Confidence 36999999999999999999999999999999999888888864
No 83
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=74.51 E-value=6.5 Score=25.71 Aligned_cols=62 Identities=10% Similarity=-0.023 Sum_probs=40.8
Q ss_pred HHHHHHHHHH--HhcC-CeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 18 ECLADLDRQL--KSHG-GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 18 ~sL~~L~~~L--~~~g-~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
+.|.++ +.+ ...| ....+..|++.+.|.+.+++.+++-|++-.. +. ....+.+...++++..
T Consensus 72 ~~l~~~-~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-g~------sv~~~vl~~a~~PVlv 136 (138)
T 1q77_A 72 RRLREV-WEKLTGSTEIPGVEYRIGPLSEEVKKFVEGKGYELVVWACY-PS------AYLCKVIDGLNLASLI 136 (138)
T ss_dssp HHHHHH-HHHHHSCCCCCCEEEECSCHHHHHHHHHTTSCCSEEEECSC-CG------GGTHHHHHHSSSEEEE
T ss_pred HHHHHH-HHHhhccCCcceEEEEcCCHHHHHHHHHHhcCCCEEEEeCC-CC------chHHHHHHhCCCceEe
Confidence 344455 442 3334 5567889999999999999999999998753 11 2233445556677654
No 84
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=74.13 E-value=24 Score=26.12 Aligned_cols=152 Identities=12% Similarity=-0.015 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC----hHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGS----PISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~----~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|..+-+..+.+.++++|..+.+...+ ..+.+..+ ...+++.|+..-.... . ..+ +.+.+ |+++..++
T Consensus 24 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~-~----~~~-~~~~~-~iPvV~i~ 95 (289)
T 3k9c_A 24 PFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQAL-MRERCEAAILLGTRFD-T----DEL-GALAD-RVPALVVA 95 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHH-TTTTEEEEEEETCCCC-H----HHH-HHHHT-TSCEEEES
T ss_pred chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHH-HhCCCCEEEEECCCCC-H----HHH-HHHHc-CCCEEEEc
Confidence 477888889999999999998887532 23344444 4468888887642221 1 223 33455 99998876
Q ss_pred Cceeec-ccccccccCCCCchhHHHHHHHhhh---cccccc----CcchhHHHHHHHHHHHHHHHhCCCeE--EEEeCCh
Q psy17626 90 SHTLWD-PEVVIQTNGNVPPLTYKMYLHTVSC---IGTMHI----GYNRFRFLLECLADLDRQLKSHGGQL--FIVQGSP 159 (184)
Q Consensus 90 ~~~L~~-p~~i~~~~~~~~~~v~~~F~~~~~~---~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L--~v~~g~~ 159 (184)
...--+ ...|.. ..+..-+...+. .+-.+. ++... ...+.++-..+.|++.|.++ .+..++.
T Consensus 96 ~~~~~~~~~~V~~-------D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~-~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 167 (289)
T 3k9c_A 96 RASGLPGVGAVRG-------DDVAGITLAVDHLTELGHRNIAHIDGADAP-GGADRRAGFLAAMDRHGLSASATVVTGGT 167 (289)
T ss_dssp SCCSSTTSEEEEE-------CHHHHHHHHHHHHHHTTCCSEEEECCTTST-THHHHHHHHHHHHHHTTCGGGEEEECCCS
T ss_pred CCCCCCCCCEEEe-------ChHHHHHHHHHHHHHCCCCcEEEEeCCCCc-cHHHHHHHHHHHHHHCCCCCCccEEECCC
Confidence 542100 011111 111111111111 111111 11122 45567777888899989873 3444322
Q ss_pred -----hHHHHHHHHHc-CcCeEEEcccc
Q psy17626 160 -----ISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 160 -----~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
.+.+.++.++. .+++||+..|.
T Consensus 168 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 195 (289)
T 3k9c_A 168 TETEGAEGMHTLLEMPTPPTAVVAFNDR 195 (289)
T ss_dssp SHHHHHHHHHHHHTSSSCCSEEEESSHH
T ss_pred CHHHHHHHHHHHHcCCCCCCEEEECChH
Confidence 23556666544 78999987653
No 85
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}
Probab=74.09 E-value=17 Score=27.93 Aligned_cols=73 Identities=12% Similarity=0.053 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeec-------------ccchhHHHHHHHHHHHHhCCCe-
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD-------------CEALWHKRDKKVKKWCAENNIT- 84 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~-------------~~~~~~~rd~~v~~~l~~~gi~- 84 (184)
...++-+.|++.|.++.|+.|........+.+..+++.++.+.- .....+.--+.+...+++.|+.
T Consensus 182 g~~~~l~~L~~~g~~~~ivS~~~~~~~~~~~~~lgl~~~~~~~l~~~d~~~tg~~~~~~~~~kpk~~~~~~~~~~lgi~~ 261 (335)
T 3n28_A 182 ELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDYAQSNTLEIVSGKLTGQVLGEVVSAQTKADILLTLAQQYDVEI 261 (335)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEEEEEEETTEEEEEEESCCCCHHHHHHHHHHHHHHHTCCG
T ss_pred CHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCCeEEeeeeEeeCCeeeeeecccccChhhhHHHHHHHHHHcCCCh
Confidence 34556678888999999999999999999999999998776531 1111233335666677776763
Q ss_pred --EEEecCc
Q psy17626 85 --VKEFVSH 91 (184)
Q Consensus 85 --~~~~~~~ 91 (184)
+..+.|.
T Consensus 262 ~~~v~vGDs 270 (335)
T 3n28_A 262 HNTVAVGDG 270 (335)
T ss_dssp GGEEEEECS
T ss_pred hhEEEEeCC
Confidence 4444443
No 86
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=74.01 E-value=8 Score=26.51 Aligned_cols=26 Identities=8% Similarity=-0.050 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChH
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPI 42 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~ 42 (184)
...+.++=+.|++.|.++.|..+.+.
T Consensus 29 ~~g~~~~l~~L~~~g~~~~i~Tn~~~ 54 (179)
T 3l8h_A 29 LPGSLQAIARLTQADWTVVLATNQSG 54 (179)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEEECTT
T ss_pred CcCHHHHHHHHHHCCCEEEEEECCCc
Confidence 34455566677788999999988764
No 87
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=73.74 E-value=12 Score=24.47 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhCCCe-----EEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 133 FLLECLADLDRQLKSHGGQ-----LFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 133 fl~~~L~~L~~~L~~~g~~-----L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
-..+.|+.+.+.+++.|++ ..+..|++.+.+.+.+++.+++-|+...
T Consensus 67 ~~~~~l~~~~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~ 118 (147)
T 3hgm_A 67 YATEIAVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGA 118 (147)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHHHHHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeC
Confidence 3456677778888877854 4567799999999999999999998754
No 88
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=73.35 E-value=7.8 Score=26.24 Aligned_cols=46 Identities=11% Similarity=0.016 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEE----EeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 134 LLECLADLDRQLKSHGGQLFI----VQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v----~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
..+.|+++.+.+++.|++..+ ..|++.+.|.+.+++.+++-|+...
T Consensus 76 ~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~ 125 (155)
T 3dlo_A 76 AKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGI 125 (155)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECC
Confidence 445677777888888887553 3499999999999999999998753
No 89
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=73.24 E-value=28 Score=26.42 Aligned_cols=153 Identities=8% Similarity=-0.003 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.|..+-+..+.+.+++.|..+.+... ++.. .+..+ ...+++.|+....... +..+. .+.+.|+++..+
T Consensus 76 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~~~~~~-----~~~~~-~l~~~~iPvV~~ 148 (332)
T 2o20_A 76 TYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETF-LSKQVDGIVYMGSSLD-----EKIRT-SLKNSRTPVVLV 148 (332)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHH-HHTTCSEEEECSSCCC-----HHHHH-HHHHHCCCEEEE
T ss_pred cHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHH-HhCCCCEEEEeCCCCC-----HHHHH-HHHhCCCCEEEE
Confidence 47778888899999999999888753 3322 23333 3568998887542111 11233 334568998887
Q ss_pred cCceee-cccccccccCCCCchhHHHHHHHhh---hcccccc----CcchhHHHHHHHHHHHHHHHhCCCeEE---EEeC
Q psy17626 89 VSHTLW-DPEVVIQTNGNVPPLTYKMYLHTVS---CIGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLF---IVQG 157 (184)
Q Consensus 89 ~~~~L~-~p~~i~~~~~~~~~~v~~~F~~~~~---~~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~---v~~g 157 (184)
+...-- ....+.. ..+..-+.... +.+-.+. ++.......+.+.-..+.|++.|+++. +..+
T Consensus 149 ~~~~~~~~~~~V~~-------D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 221 (332)
T 2o20_A 149 GTIDGDKEIPSVNI-------DYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEG 221 (332)
T ss_dssp SCCCTTSCSCEEEC-------CHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECS
T ss_pred ccccCCCCCCEEEe-------ChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeC
Confidence 643110 0011111 11111111111 1121111 222223345567778888888887643 4444
Q ss_pred C--h---hHHHHHHHHHcCcCeEEEcccc
Q psy17626 158 S--P---ISIFQKLKRELNFTKLCFEQDC 181 (184)
Q Consensus 158 ~--~---~~~l~~l~~~~~~~~v~~n~~~ 181 (184)
+ . .+.+.++.+. ..++||+..|.
T Consensus 222 ~~~~~~~~~~~~~ll~~-~~~ai~~~~d~ 249 (332)
T 2o20_A 222 NYSYEQGKALAERLLER-GATSAVVSHDT 249 (332)
T ss_dssp CCSHHHHHHHHHHHHHT-TCCEEEESCHH
T ss_pred CCCHHHHHHHHHHHhcc-CCCEEEECChH
Confidence 3 2 2456677766 89999987653
No 90
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=73.22 E-value=13 Score=24.20 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhCCC-----eEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 133 FLLECLADLDRQLKSHGG-----QLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 133 fl~~~L~~L~~~L~~~g~-----~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
...+.++.+++-+++.|. ...+..|++.+.+.+.+++.+++-|+...
T Consensus 63 ~~~~~~~~l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~ 114 (143)
T 3fdx_A 63 LREGSETQLKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIAS 114 (143)
T ss_dssp HHHHHHHHHHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEES
T ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeC
Confidence 344566667777777775 45677899999999999999999998764
No 91
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=72.99 E-value=8.7 Score=28.78 Aligned_cols=149 Identities=11% Similarity=0.028 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhcCCeEEEEEC--ChH--HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCcee
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQG--SPI--SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTL 93 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g--~~~--~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L 93 (184)
+-+..+.+.++++|..+.+... ++. ..+.+.+...+++.|++.-..... ..+.+.+.|+++..++...
T Consensus 31 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-------~~~~~~~~~iPvV~~~~~~- 102 (301)
T 3miz_A 31 DIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRI-------VDPESGDVSIPTVMINCRP- 102 (301)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE-------CCCCCTTCCCCEEEEEEEC-
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCccH-------HHHHHHhCCCCEEEECCCC-
Confidence 6677788889999999988764 332 223344455688888875432211 1223456789988775432
Q ss_pred ecc---cccccccCCCCchhHHHHHHHhhhc---ccccc----CcchhHHHHHHHHHHHHHHHhCCCeE---EEEeC---
Q psy17626 94 WDP---EVVIQTNGNVPPLTYKMYLHTVSCI---GTMHI----GYNRFRFLLECLADLDRQLKSHGGQL---FIVQG--- 157 (184)
Q Consensus 94 ~~p---~~i~~~~~~~~~~v~~~F~~~~~~~---~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L---~v~~g--- 157 (184)
-++ ..|.. ..+..-+...+.+ +-.+. +........+.+.-..+.|++.|+++ .+..+
T Consensus 103 ~~~~~~~~V~~-------D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~ 175 (301)
T 3miz_A 103 QTRELLPSIEP-------DDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDG 175 (301)
T ss_dssp SSTTSSCEEEE-------CHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEES
T ss_pred CCCCCCCEEee-------ChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCC
Confidence 111 11111 1111111122111 11111 22222345566777888888888753 34444
Q ss_pred C-----hh--HHHHHHHHHc-CcCeEEEcccc
Q psy17626 158 S-----PI--SIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 158 ~-----~~--~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
+ .. +.+.++.+.. .+++||+..|.
T Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 207 (301)
T 3miz_A 176 PVGAENNYVFAAATEMLKQDDRPTAIMSGNDE 207 (301)
T ss_dssp STTSCEECHHHHHHHHHTSTTCCSEEEESSHH
T ss_pred CcCccccHHHHHHHHHHcCCCCCcEEEECCHH
Confidence 2 12 6777777655 79999987653
No 92
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=72.87 E-value=11 Score=27.88 Aligned_cols=149 Identities=9% Similarity=-0.026 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCe-EEEEEC--ChHH--HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 13 FRFLLECLADLDRQLKSHGGQ-LFIVQG--SPIS--IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~-L~v~~g--~~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
..|..+-+..+.+.++++|.. +.+... ++.. .+.+.+...+++.|+... + .+. .+.+.|+++..
T Consensus 22 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~---~-------~~~-~~~~~~iPvV~ 90 (277)
T 3hs3_A 22 NRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA---F-------TIP-PNFHLNTPLVM 90 (277)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---C-------CCC-TTCCCSSCEEE
T ss_pred ChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---h-------HHH-HHHhCCCCEEE
Confidence 357888888999999999999 877753 3332 233445557899888765 1 111 23567999988
Q ss_pred ecCc-eeeccc-ccccccCCCCchhHHHHHHHhhhcc--ccc----cCcchhHHHHHHHHHHHHHHHhCCCeEEE--EeC
Q psy17626 88 FVSH-TLWDPE-VVIQTNGNVPPLTYKMYLHTVSCIG--TMH----IGYNRFRFLLECLADLDRQLKSHGGQLFI--VQG 157 (184)
Q Consensus 88 ~~~~-~L~~p~-~i~~~~~~~~~~v~~~F~~~~~~~~--~~~----~~~~r~~fl~~~L~~L~~~L~~~g~~L~v--~~g 157 (184)
++.. .- ++. .+.. ..+..-+...+.+- -.+ .+........+.+.-..+.|++.|+++.. ..+
T Consensus 91 ~~~~~~~-~~~~~V~~-------D~~~~g~~a~~~L~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~ 162 (277)
T 3hs3_A 91 YDSANIN-DDIVRIVS-------NNTKGGKESIKLLSKKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLEETPE 162 (277)
T ss_dssp ESCCCCC-SSSEEEEE-------CHHHHHHHHHHTSCTTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred EcccccC-CCCEEEEE-------ChHHHHHHHHHHHHhCCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCCCccC
Confidence 7654 21 111 1211 11222222222222 111 12222234556677788889999987653 344
Q ss_pred Ch-hHHHHHHHHH-cCcCeEEEccc
Q psy17626 158 SP-ISIFQKLKRE-LNFTKLCFEQD 180 (184)
Q Consensus 158 ~~-~~~l~~l~~~-~~~~~v~~n~~ 180 (184)
+. .+.+.++.++ ..+++||+..|
T Consensus 163 ~~~~~~~~~~l~~~~~~~ai~~~~d 187 (277)
T 3hs3_A 163 NNPYISAQSALNKSNQFDAIITVND 187 (277)
T ss_dssp SCHHHHHHHHHHTGGGCSEEECSSH
T ss_pred CchHHHHHHHHcCCCCCCEEEECCH
Confidence 33 4566777665 57999998765
No 93
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=72.74 E-value=26 Score=25.91 Aligned_cols=153 Identities=12% Similarity=0.041 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.|..+-+..+.+.+++.|..+.+... ++.. .+..+ ...+++.|+..-.... +..++ .+.+.|+++..+
T Consensus 29 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~-----~~~~~-~l~~~~iPvV~~ 101 (289)
T 2fep_A 29 IFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTM-LGKQVDGIVFMGGNIT-----DEHVA-EFKRSPVPIVLA 101 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHH-HHTTCSEEEECCSCCC-----HHHHH-HHHHSSSCEEEE
T ss_pred chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHH-HhCCCCEEEEecCCCC-----HHHHH-HHHhcCCCEEEE
Confidence 47778888899999999999888754 3322 23333 4568998887542111 22333 345679999887
Q ss_pred cCceee-cccccccccCCCCchhHHHHHHHhhh---cccccc----Ccc-hhHHHHHHHHHHHHHHHhCCCeEE---EEe
Q psy17626 89 VSHTLW-DPEVVIQTNGNVPPLTYKMYLHTVSC---IGTMHI----GYN-RFRFLLECLADLDRQLKSHGGQLF---IVQ 156 (184)
Q Consensus 89 ~~~~L~-~p~~i~~~~~~~~~~v~~~F~~~~~~---~~~~~~----~~~-r~~fl~~~L~~L~~~L~~~g~~L~---v~~ 156 (184)
+...-- ....+.. ..+..-+...+. .+-.+. ++. ......+.+.-..+.|++.|+++. +..
T Consensus 102 ~~~~~~~~~~~V~~-------D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~ 174 (289)
T 2fep_A 102 ASVEEQEETPSVAI-------DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAE 174 (289)
T ss_dssp SCCCTTCCSCEEEC-------CHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEE
T ss_pred ccccCCCCCCEEEE-------CcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEee
Confidence 653210 0011111 111111111111 121111 222 223334556677788888887542 344
Q ss_pred CC--h---hHHHHHHHHHc-CcCeEEEccc
Q psy17626 157 GS--P---ISIFQKLKREL-NFTKLCFEQD 180 (184)
Q Consensus 157 g~--~---~~~l~~l~~~~-~~~~v~~n~~ 180 (184)
++ . .+.+.++.++. .+++||+..|
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 204 (289)
T 2fep_A 175 GDYTYDSGLEALQHLMSLDKKPTAILSATD 204 (289)
T ss_dssp CCSCHHHHHHHHHHHTTSSSCCSEEEESSH
T ss_pred CCCCHHHHHHHHHHHHcCCCCCCEEEECCH
Confidence 32 2 24555666553 6899998755
No 94
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=72.57 E-value=18 Score=25.12 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEe
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 60 (184)
.+.++-+.|++.|.++.++.+.+...+..+.+..++...+.+
T Consensus 79 ~~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~ 120 (217)
T 3m1y_A 79 GALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSN 120 (217)
T ss_dssp THHHHHHHHHTTTEEEEEEEEEEHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHcCcchhccc
Confidence 345666778888999999999888888888888888765543
No 95
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=72.45 E-value=26 Score=25.69 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECChH-HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCce
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGSPI-SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHT 92 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~~~-~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~ 92 (184)
.|..+-+..+.+.++++|..+.+...+.. +...+ .+++.|+....-.. +..++ .+.+.|+++..++...
T Consensus 21 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~----~~vdgiI~~~~~~~-----~~~~~-~l~~~~iPvV~~~~~~ 90 (277)
T 3cs3_A 21 SFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPE----KMVDGAIILDWTFP-----TKEIE-KFAERGHSIVVLDRTT 90 (277)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCT----TTCSEEEEECTTSC-----HHHHH-HHHHTTCEEEESSSCC
T ss_pred hhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhh----ccccEEEEecCCCC-----HHHHH-HHHhcCCCEEEEecCC
Confidence 36777788889999999999888764321 11111 17888877542111 12333 3456799998876432
Q ss_pred eecc--cccccccCCCCchhHHHHHHHhh---hcccccc----CcchhHHHHHHHHHHHHHHHhCCCeEEEEeCC--h--
Q psy17626 93 LWDP--EVVIQTNGNVPPLTYKMYLHTVS---CIGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLFIVQGS--P-- 159 (184)
Q Consensus 93 L~~p--~~i~~~~~~~~~~v~~~F~~~~~---~~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~--~-- 159 (184)
-++ ..+..+ .+..-+...+ +.+-.+. +........+.+.-..+.|++.|+++.+..++ .
T Consensus 91 -~~~~~~~V~~D-------~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~ 162 (277)
T 3cs3_A 91 -EHRNIRQVLLD-------NRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYEIIQGDFTEPS 162 (277)
T ss_dssp -CSTTEEEEEEC-------HHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEEEEECCSSHHH
T ss_pred -CCCCCCEEEeC-------cHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHHHHHHHcCCCeeEEeCCCChhH
Confidence 111 111111 1111111111 1121111 12222334456777888888889877655443 2
Q ss_pred -hHHHHHHHHH--cCcCeEEEcccc
Q psy17626 160 -ISIFQKLKRE--LNFTKLCFEQDC 181 (184)
Q Consensus 160 -~~~l~~l~~~--~~~~~v~~n~~~ 181 (184)
.+.+.++.++ ..+++||+..|.
T Consensus 163 ~~~~~~~~l~~~~~~~~ai~~~~d~ 187 (277)
T 3cs3_A 163 GYAAAKKILSQPQTEPVDVFAFNDE 187 (277)
T ss_dssp HHHHHHHHTTSCCCSSEEEEESSHH
T ss_pred HHHHHHHHHhcCCCCCcEEEEcChH
Confidence 2345566665 378999987653
No 96
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=71.70 E-value=5.5 Score=28.08 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=32.5
Q ss_pred HHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 141 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 141 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
+-+.|++.|+++.++.|++...+..+++..|++.+|..
T Consensus 54 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~ 91 (189)
T 3mn1_A 54 GIKMLIASGVTTAIISGRKTAIVERRAKSLGIEHLFQG 91 (189)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCSEEECS
T ss_pred HHHHHHHCCCEEEEEECcChHHHHHHHHHcCCHHHhcC
Confidence 44567778999999999999989999999999988754
No 97
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=71.57 E-value=3.5 Score=33.11 Aligned_cols=46 Identities=28% Similarity=0.334 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc------ceEEEee
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF------TKLCFEQ 61 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~------~~v~~~~ 61 (184)
+.....+|-+.|++.|++.+|+.|...+.+..++++.++ ++|+.++
T Consensus 222 ~~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia~~lg~~y~ip~~~Vig~~ 273 (385)
T 4gxt_A 222 TLDEMVDLYRSLEENGIDCYIVSASFIDIVRAFATDTNNNYKMKEEKVLGLR 273 (385)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHCTTSSCCCCGGGEEEEC
T ss_pred eCHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCcccCCCcceEEEeE
Confidence 356678999999999999999999999999999998654 5677654
No 98
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=71.56 E-value=28 Score=25.64 Aligned_cols=158 Identities=10% Similarity=-0.015 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC--ChHHH--HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQG--SPISI--FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~~--l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
|..+-+..+.+.+++.|..+.+... ++... +.+.+...+++.|++.-.-........ .+.+.+.+.|+++..++.
T Consensus 29 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~-~~~~~~~~~~iPvV~~~~ 107 (298)
T 3tb6_A 29 IFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNI-GYYLNLEKNGIPFAMINA 107 (298)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTH-HHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcH-HHHHHHHhcCCCEEEEec
Confidence 6777788889999999999988864 33322 223333578999888642211111112 233445667999998765
Q ss_pred ceee-cccccccccCCCCchhHHHHHHHhhh---cccccc----CcchhHHHHHHHHHHHHHHHhCCCeEE---EEeCC-
Q psy17626 91 HTLW-DPEVVIQTNGNVPPLTYKMYLHTVSC---IGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLF---IVQGS- 158 (184)
Q Consensus 91 ~~L~-~p~~i~~~~~~~~~~v~~~F~~~~~~---~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~---v~~g~- 158 (184)
..-- +...+..+ .+..-+..... .+-.+. ++.. ....+.+.-..+.|++.|++.. +...+
T Consensus 108 ~~~~~~~~~V~~d-------~~~~~~~a~~~L~~~G~~~i~~i~~~~~-~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~ 179 (298)
T 3tb6_A 108 SYAELAAPSFTLD-------DVKGGMMAAEHLLSLGHTHMMGIFKADD-TQGVKRMNGFIQAHRERELFPSPDMIVTFTT 179 (298)
T ss_dssp CCTTCSSCEEEEC-------HHHHHHHHHHHHHHTTCCSEEEEEESSS-HHHHHHHHHHHHHHHHTTCCCCGGGEEEECH
T ss_pred CcCCCCCCEEEeC-------cHHHHHHHHHHHHHCCCCcEEEEcCCCC-ccHHHHHHHHHHHHHHcCCCCCcceEEEecc
Confidence 3210 00112111 11111111111 111111 1122 3445667778888988887632 22211
Q ss_pred ------hhHHHHHHHHHcC---cCeEEEcccc
Q psy17626 159 ------PISIFQKLKRELN---FTKLCFEQDC 181 (184)
Q Consensus 159 ------~~~~l~~l~~~~~---~~~v~~n~~~ 181 (184)
..+.+.++.+++. ++.||+..|.
T Consensus 180 ~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~ 211 (298)
T 3tb6_A 180 EEKESKLLEKVKATLEKNSKHMPTAILCYNDE 211 (298)
T ss_dssp HHHTTHHHHHHHHHHHHTTTSCCSEEECSSHH
T ss_pred cchhhhHHHHHHHHHhcCCCCCCeEEEEeCcH
Confidence 1456777877764 8999986553
No 99
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=71.51 E-value=14 Score=29.44 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeec-----------cc--chhHHHHHHHHHHHHhCCCe
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD-----------CE--ALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~-----------~~--~~~~~rd~~v~~~l~~~gi~ 84 (184)
...++-+.|++.|.++.|+.|.+...+..+++..+++.++.+.- .+ ......-+.++.++++.|+.
T Consensus 260 g~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~~~~lgl~~~~~~~l~~~dg~~tg~~~~~v~~~kpk~~~~~~~~~~~gi~ 338 (415)
T 3p96_A 260 GARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAANELEIVDGTLTGRVVGPIIDRAGKATALREFAQRAGVP 338 (415)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCSEEEEECEEEETTEEEEEECSSCCCHHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCccceeeeeEEEeCCEEEeeEccCCCCCcchHHHHHHHHHHcCcC
Confidence 45677788889999999999999999999999999998877631 00 11233335666677777763
No 100
>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}
Probab=71.48 E-value=15 Score=26.18 Aligned_cols=63 Identities=10% Similarity=0.129 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc----ceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+.++-+.|++.|.++.++.+.+...+..+.+..++ +.++...+.. .....-..+..++++.|+
T Consensus 115 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~-~~kp~~~~~~~~~~~~g~ 181 (240)
T 3sd7_A 115 MKEILEMLYKNGKILLVATSKPTVFAETILRYFDIDRYFKYIAGSNLDG-TRVNKNEVIQYVLDLCNV 181 (240)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEECTTS-CCCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHcCcHhhEEEEEeccccC-CCCCCHHHHHHHHHHcCC
Confidence 34555667777888888887777777777777664 3455444332 222222345555555565
No 101
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=71.14 E-value=32 Score=26.18 Aligned_cols=154 Identities=12% Similarity=0.051 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC--ChHH--HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQG--SPIS--IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
|+.+-+..+.+.++++|..+.+... ++.. .+.+.+...+++.|+..-.... . ...+.+.+.|+++..+++
T Consensus 76 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~-~-----~~~~~l~~~~iPvV~~~~ 149 (339)
T 3h5o_A 76 VFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA-E-----PFERILSQHALPVVYMMD 149 (339)
T ss_dssp TTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC-T-----THHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC-H-----HHHHHHhcCCCCEEEEee
Confidence 6677788888999999999988764 3322 2233334568898887542211 1 233445677999988754
Q ss_pred ceeecccccccccCCCCchhHHHHHHHhhh---cccccc---CcchhHHHHHHHHHHHHHHHhCCC---eE-EEEeCC--
Q psy17626 91 HTLWDPEVVIQTNGNVPPLTYKMYLHTVSC---IGTMHI---GYNRFRFLLECLADLDRQLKSHGG---QL-FIVQGS-- 158 (184)
Q Consensus 91 ~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~---~~~~~~---~~~r~~fl~~~L~~L~~~L~~~g~---~L-~v~~g~-- 158 (184)
..--+...+..+ .+..-+..... .+-.+. +........+.+.-..+.|++.|+ .. .+..++
T Consensus 150 ~~~~~~~~V~~D-------~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~ 222 (339)
T 3h5o_A 150 LADDGRCCVGFS-------QEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSS 222 (339)
T ss_dssp CCSSSCCEEECC-------HHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCC
T ss_pred cCCCCCeEEEEC-------HHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCC
Confidence 211111112111 11111111111 111111 111112345667778888998887 22 233332
Q ss_pred ---hhHHHHHHHHHc-CcCeEEEcccc
Q psy17626 159 ---PISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 159 ---~~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
..+.+.++.++. .+++||+..|.
T Consensus 223 ~~~~~~~~~~ll~~~~~~~ai~~~nD~ 249 (339)
T 3h5o_A 223 MQMGADMLDRALAERPDCDALFCCNDD 249 (339)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEESSHH
T ss_pred HHHHHHHHHHHHcCCCCCcEEEECChH
Confidence 235667777765 78999987653
No 102
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=70.78 E-value=7.6 Score=29.61 Aligned_cols=113 Identities=9% Similarity=0.035 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHcCcceEEEee-ccc-chhHHHHHHHHHHHHhCCCeEEEecCcee----ecccc-----cccccCCCCch
Q psy17626 41 PISIFQKLKRELNFTKLCFEQ-DCE-ALWHKRDKKVKKWCAENNITVKEFVSHTL----WDPEV-----VIQTNGNVPPL 109 (184)
Q Consensus 41 ~~~~l~~l~~~~~~~~v~~~~-~~~-~~~~~rd~~v~~~l~~~gi~~~~~~~~~L----~~p~~-----i~~~~~~~~~~ 109 (184)
+.+...+.+++.|.+.|=+.- +-. ++.. .-+.+++.+++.|+++...+...+ -+|.. +........-.
T Consensus 30 ~~~~~l~~~a~~G~~~VEl~~~~~~~~~~~-~~~~~~~~l~~~GL~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 108 (303)
T 3l23_A 30 DVAANLRKVKDMGYSKLELAGYGKGAIGGV-PMMDFKKMAEDAGLKIISSHVNPVDTSISDPFKAMIFKYSKEVTPKIME 108 (303)
T ss_dssp CHHHHHHHHHHTTCCEEEECCEETTEETTE-EHHHHHHHHHHTTCEEEEEECCCBCTTCSSTTTTBCCSCCTTTHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEeccccCcccCCC-CHHHHHHHHHHcCCeEEEEecccccccccCcccccccccchhhHHHHHH
Confidence 455555666777887774432 100 1111 235778888889998876643321 11110 00000000011
Q ss_pred hHHHHHHHhhhcccc-----cc----CcchhHHHHHHHHHHHHHHHhCCCe--EEE
Q psy17626 110 TYKMYLHTVSCIGTM-----HI----GYNRFRFLLECLADLDRQLKSHGGQ--LFI 154 (184)
Q Consensus 110 v~~~F~~~~~~~~~~-----~~----~~~r~~fl~~~L~~L~~~L~~~g~~--L~v 154 (184)
.+.........++.+ .. ....+..+.++|..+.+..++.|+. |.+
T Consensus 109 ~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~~l~~ 164 (303)
T 3l23_A 109 YWKATAADHAKLGCKYLIQPMMPTITTHDEAKLVCDIFNQASDVIKAEGIATGFGY 164 (303)
T ss_dssp HHHHHHHHHHHTTCSEEEECSCCCCCSHHHHHHHHHHHHHHHHHHHHTTCTTCEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcceEEE
Confidence 122223333333321 11 1123456788899999999999999 776
No 103
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=70.61 E-value=29 Score=25.57 Aligned_cols=153 Identities=13% Similarity=0.078 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEE-E--CChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIV-Q--GSPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~-~--g~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
|..+-+..+.+.+++.|..+.+. . +++.. .+..+. ..+++.|+..-... . +..+ +.+.+.|+++..+
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~-~----~~~~-~~l~~~~iPvV~~ 94 (290)
T 3clk_A 22 FAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAI-ERPVMGILLLSIAL-T----DDNL-QLLQSSDVPYCFL 94 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHH-SSCCSEEEEESCC---------CH-HHHHCC--CEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHH-hcCCCEEEEecccC-C----HHHH-HHHHhCCCCEEEE
Confidence 67778888899999999998887 4 23322 344443 46888888753211 1 1122 3456679998887
Q ss_pred cCceeecccccccccCCCCchhHHHHHHHhh---hcccccc----CcchhHHHHHHHHHHHHHHHhCCCeEE---EEeCC
Q psy17626 89 VSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS---CIGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLF---IVQGS 158 (184)
Q Consensus 89 ~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~---~~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~---v~~g~ 158 (184)
+...--+...+..+ .+..-+.... +.+-.+. +........+.+.-+.+.+++.|+++. +..++
T Consensus 95 ~~~~~~~~~~V~~D-------~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 167 (290)
T 3clk_A 95 SMGFDDDRPFISSD-------DEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGD 167 (290)
T ss_dssp SCC--CCSCEEECC-------HHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCC
T ss_pred cCCCCCCCCEEEeC-------hHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEcCC
Confidence 65321001112111 1111111111 1111111 111222344667777888888887642 44443
Q ss_pred --hh---HHHHHHHHHcCcCeEEEcccc
Q psy17626 159 --PI---SIFQKLKRELNFTKLCFEQDC 181 (184)
Q Consensus 159 --~~---~~l~~l~~~~~~~~v~~n~~~ 181 (184)
.. +.+.++.+..++++||+..|.
T Consensus 168 ~~~~~~~~~~~~~l~~~~~~ai~~~~d~ 195 (290)
T 3clk_A 168 YSYTSGEQAMKAFGKNTDLTGIIAASDM 195 (290)
T ss_dssp SSHHHHHHHHHHHCTTCCCSEEEESSHH
T ss_pred CChhhHHHHHHHHhccCCCcEEEECCcH
Confidence 22 344555443468999987553
No 104
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=70.33 E-value=6.1 Score=28.26 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=30.9
Q ss_pred HHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 143 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 143 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
+.|++.|+++.|+.+++......++++.|++.+|.+
T Consensus 62 ~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~ 97 (195)
T 3n07_A 62 KALMNAGIEIAIITGRRSQIVENRMKALGISLIYQG 97 (195)
T ss_dssp HHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEECS
T ss_pred HHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeC
Confidence 456677999999999999989999999999988754
No 105
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=70.16 E-value=22 Score=24.29 Aligned_cols=64 Identities=9% Similarity=0.000 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc----ceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
.+.++-+.|++.|.++.++.+.+...+..+.+..++ +.++...+... .+---..++..+++.|+
T Consensus 93 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~-~kp~~~~~~~~~~~~~~ 160 (214)
T 3e58_A 93 DVLKVLNEVKSQGLEIGLASSSVKADIFRALEENRLQGFFDIVLSGEEFKE-SKPNPEIYLTALKQLNV 160 (214)
T ss_dssp THHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEEGGGCSS-CTTSSHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHcCcHhheeeEeecccccC-CCCChHHHHHHHHHcCC
Confidence 355666778888999999998888888888888765 44555544322 11111244455555555
No 106
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=69.97 E-value=30 Score=25.48 Aligned_cols=164 Identities=9% Similarity=-0.083 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHhc-CCeEEEEE-----CChHHHH--HHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeE
Q psy17626 14 RFLLECLADLDRQLKSH-GGQLFIVQ-----GSPISIF--QKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~-g~~L~v~~-----g~~~~~l--~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
.|..+-+..+.+.++++ |-.+.+.. +++.... .+.+...+++.|+..-.... ..+..+ +.+.+.||++
T Consensus 22 ~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~---~~~~~~-~~~~~~~iPv 97 (304)
T 3gbv_A 22 EYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQ---YTKGFT-DALNELGIPY 97 (304)
T ss_dssp SHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGG---GTHHHH-HHHHHHTCCE
T ss_pred hHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChH---HHHHHH-HHHHHCCCeE
Confidence 37777788888888888 77776643 2454332 22334578998888642211 112223 3345569999
Q ss_pred EEecCceeec--ccccccccCCCCchhHHHHHHHh---hhccccc---cCcchhHHHHHHHHHHHHHHHhCCCeEEEE--
Q psy17626 86 KEFVSHTLWD--PEVVIQTNGNVPPLTYKMYLHTV---SCIGTMH---IGYNRFRFLLECLADLDRQLKSHGGQLFIV-- 155 (184)
Q Consensus 86 ~~~~~~~L~~--p~~i~~~~~~~~~~v~~~F~~~~---~~~~~~~---~~~~r~~fl~~~L~~L~~~L~~~g~~L~v~-- 155 (184)
..++...--. ...|..++...-+..-..+...- .+...-. .+........+.+.-..+.|++.|.++.+.
T Consensus 98 V~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~ 177 (304)
T 3gbv_A 98 IYIDSQIKDAPPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILEL 177 (304)
T ss_dssp EEESSCCTTSCCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred EEEeCCCCCCCceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 8876532110 11111110000011111111110 0010000 022223445566777888888888654332
Q ss_pred -e-----CChhHHHHHHHHHc-CcCeEEEcccc
Q psy17626 156 -Q-----GSPISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 156 -~-----g~~~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
. ....+.+.++.+++ .++.||+..+.
T Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 210 (304)
T 3gbv_A 178 NLHADLNIEDSRMLDDFFREHPDVKHGITFNSK 210 (304)
T ss_dssp EEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC
T ss_pred eecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc
Confidence 2 23456777888776 79999998764
No 107
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=69.95 E-value=12 Score=27.44 Aligned_cols=134 Identities=14% Similarity=0.116 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHcCcceEEEeeccc---chhHHHHHHHHHHHHhCCCeEEEecCceeecccccccccCCCCchhHHHHHHH
Q psy17626 41 PISIFQKLKRELNFTKLCFEQDCE---ALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT 117 (184)
Q Consensus 41 ~~~~l~~l~~~~~~~~v~~~~~~~---~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~ 117 (184)
+.+...+.+++.|++.|=...+.. +.....-+.+++.+++.|+++..++.. ++... . + ...-..+......
T Consensus 20 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~--~~~~~-~--~-~~~~~~~~~~i~~ 93 (272)
T 2q02_A 20 SIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAV--YPFNQ-L--T-EEVVKKTEGLLRD 93 (272)
T ss_dssp CHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEEE--TTTTS-C--C-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEEechhh--hccCC-c--H-HHHHHHHHHHHHH
Confidence 445555666677877775543221 101223456777888888887665432 11110 0 0 0001112222223
Q ss_pred hhhcccccc-------CcchhHHH-HHHHHHHHHHHHhCCCeEEEEeC-------ChhHHHHHHHHHcCcCeEEEcccc
Q psy17626 118 VSCIGTMHI-------GYNRFRFL-LECLADLDRQLKSHGGQLFIVQG-------SPISIFQKLKRELNFTKLCFEQDC 181 (184)
Q Consensus 118 ~~~~~~~~~-------~~~r~~fl-~~~L~~L~~~L~~~g~~L~v~~g-------~~~~~l~~l~~~~~~~~v~~n~~~ 181 (184)
...++.+.. +...+..+ .++|..+....++.|+.+.+-.- ...+.+.+++++.+ ..+-.+-|.
T Consensus 94 a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~~E~~~~~~~~~~~~~~~~~l~~~v~-~~~g~~~D~ 171 (272)
T 2q02_A 94 AQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQGLVEPLGFRVSSLRSAVWAQQLIREAG-SPFKVLLDT 171 (272)
T ss_dssp HHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHHTTTCEEEECCCCSTTCSCCCHHHHHHHHHHHT-CCCEEEEEH
T ss_pred HHHhCCCEEEEccCCCchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccCHHHHHHHHHHhC-cCeEEEEEc
Confidence 333333211 11334566 88899998888888998776431 23455667888877 666655554
No 108
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=69.84 E-value=5.8 Score=28.78 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=33.0
Q ss_pred HHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 141 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 141 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
+-+.|++.|+++.|+.+++......++++.|++.+|.+
T Consensus 84 ~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~ 121 (211)
T 3ij5_A 84 GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQG 121 (211)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEECS
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhcc
Confidence 55677788999999999999999999999999998764
No 109
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=69.55 E-value=18 Score=26.70 Aligned_cols=154 Identities=12% Similarity=0.027 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEE--CChH--HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQ--GSPI--SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~--g~~~--~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|..+-+..+.+.+++.|..+.+.. +++. ..+.+.+...+++.|++.... .. +..+.+. .+.|+++..++
T Consensus 25 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-~~----~~~~~~~-~~~~iPvV~~~ 98 (289)
T 3g85_A 25 NIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANIS-NY----DLEYLNK-ASLTLPIILFN 98 (289)
T ss_dssp GGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCC-HH----HHHHHHH-CCCSSCEEEES
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCC-cc----cHHHHHh-ccCCCCEEEEC
Confidence 4777788888999999999887653 2222 223344455688988886421 11 1223322 35789998887
Q ss_pred CceeecccccccccCCCCchhHHHHHHHhhh---cccccc----CcchhHHHHHHHHHHHHHHHhCCCeEE---EEeCC-
Q psy17626 90 SHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC---IGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLF---IVQGS- 158 (184)
Q Consensus 90 ~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~---~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~---v~~g~- 158 (184)
... -+...|..+ .+..-+...+. .+-.+. +........+.+.-..+.+++.|+++. +..++
T Consensus 99 ~~~-~~~~~V~~D-------~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~ 170 (289)
T 3g85_A 99 RLS-NKYSSVNVD-------NYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAEN 170 (289)
T ss_dssp CCC-SSSEEEEEC-------HHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCS
T ss_pred CCC-CCCCEEEeC-------HHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCC
Confidence 531 011111111 11111111111 121111 222233445667778888998888642 33432
Q ss_pred ----hhHHHHHHHHHc-CcCeEEEcccc
Q psy17626 159 ----PISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 159 ----~~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
..+.+.++.++. .+++||+..|.
T Consensus 171 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 198 (289)
T 3g85_A 171 SIHGGVDAAKKLMKLKNTPKALFCNSDS 198 (289)
T ss_dssp SHHHHHHHHHHHTTSSSCCSEEEESSHH
T ss_pred CHHHHHHHHHHHHcCCCCCcEEEEcCCH
Confidence 234566666654 68999987653
No 110
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=69.35 E-value=17 Score=25.45 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc----ceEEEeecccchhHHHHHHHHHHHHhCCCe
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDCEALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~ 84 (184)
.+.++-+.|++.|.++.+..+.+...+..+.+..++ +.++...+.. .....-..+...+++.|+.
T Consensus 90 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~-~~kp~~~~~~~~~~~lgi~ 158 (226)
T 3mc1_A 90 GIEALLSSLKDYGFHLVVATSKPTVFSKQILEHFKLAFYFDAIVGSSLDG-KLSTKEDVIRYAMESLNIK 158 (226)
T ss_dssp THHHHHHHHHHHTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEECTTS-SSCSHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCHhheeeeeccCCCC-CCCCCHHHHHHHHHHhCcC
Confidence 345566677778999999988887878888887764 4455554443 2222334566666666763
No 111
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=69.29 E-value=34 Score=25.85 Aligned_cols=154 Identities=16% Similarity=0.053 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECC-hHHHHHHH---HHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQGS-PISIFQKL---KRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g~-~~~~l~~l---~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
|..+-+..+.+.+++.|..+.+...+ ..+.-.++ +...+++.|+....... +..+ +.+.+.|+++..++.
T Consensus 74 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-----~~~~-~~l~~~~iPvV~~~~ 147 (332)
T 2hsg_A 74 FYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVT-----EEHV-EELKKSPVPVVLAAS 147 (332)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSSCC-----HHHH-HHHTTSSSCEEEESC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCC-----HHHH-HHHHhCCCCEEEEcc
Confidence 67777888888899999998887543 22222222 23457888877532111 1223 334567999888765
Q ss_pred ceeec-ccccccccCCCCchhHHHHHHHhh---hcccccc----Ccc-hhHHHHHHHHHHHHHHHhCCCeEE---EEeCC
Q psy17626 91 HTLWD-PEVVIQTNGNVPPLTYKMYLHTVS---CIGTMHI----GYN-RFRFLLECLADLDRQLKSHGGQLF---IVQGS 158 (184)
Q Consensus 91 ~~L~~-p~~i~~~~~~~~~~v~~~F~~~~~---~~~~~~~----~~~-r~~fl~~~L~~L~~~L~~~g~~L~---v~~g~ 158 (184)
..--+ ...+.. ..+..-+...+ +.+-.+. ++. ......+.+.-..+.|++.|+++. +..++
T Consensus 148 ~~~~~~~~~V~~-------D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 220 (332)
T 2hsg_A 148 IESTNQIPSVTI-------DYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGD 220 (332)
T ss_dssp CCSCTTSCEEEE-------CHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECC
T ss_pred ccCCCCCCEEEE-------ChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCC
Confidence 32100 011111 11111111111 1121111 222 223334556777888888887542 44443
Q ss_pred --h---hHHHHHHHHHc-CcCeEEEcccc
Q psy17626 159 --P---ISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 159 --~---~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
. .+.+.++.+.. .+++||+..|.
T Consensus 221 ~~~~~~~~~~~~ll~~~~~~~ai~~~nd~ 249 (332)
T 2hsg_A 221 YTYDSGIEAVEKLLEEDEKPTAIFVGTDE 249 (332)
T ss_dssp SSHHHHHHHHHHHHHSSSCCSEEEESSHH
T ss_pred CCHHHHHHHHHHHHcCCCCCeEEEECChH
Confidence 2 24566676655 69999987653
No 112
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=69.14 E-value=23 Score=28.47 Aligned_cols=63 Identities=8% Similarity=0.050 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHH--------cCcceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE--------LNFTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~--------~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
-++..+.++=+.|++.|+++-|..+++.+.+...+++ .++..++.+. +-.-+.+.+.+++.|+
T Consensus 256 ~~ypgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~~l~~~~~~~l~l~~~~~v~~~~------KPKp~~l~~al~~Lgl 326 (387)
T 3nvb_A 256 KAFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFERNPEMVLKLDDIAVFVANW------ENKADNIRTIQRTLNI 326 (387)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEESCHHHHHHHHHHCTTCSSCGGGCSEEEEES------SCHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhhccccccCccCccEEEeCC------CCcHHHHHHHHHHhCc
Confidence 4577888888999999999999999999988888876 3454544322 2223456777777776
No 113
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=69.03 E-value=34 Score=25.70 Aligned_cols=77 Identities=9% Similarity=0.045 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHhcCC---eEEEEECChHHHHHHHHHHcCcceEEEeec-ccchhHHH-HHHHHHHHHhCCCeEEEec
Q psy17626 15 FLLECLADLDRQLKSHGG---QLFIVQGSPISIFQKLKRELNFTKLCFEQD-CEALWHKR-DKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~---~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~-~~~~~~~r-d~~v~~~l~~~gi~~~~~~ 89 (184)
...+....|++-+++.|. ...+..|++.+.|.+.+++.+++-|++-.. -....+-. -....+.+....+++..+.
T Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~ 304 (319)
T 3olq_A 225 LRGQHLIAMKELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIK 304 (319)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEEC
Confidence 334444555555566675 478889999999999999999999988752 22222222 2334455666788887654
Q ss_pred Cc
Q psy17626 90 SH 91 (184)
Q Consensus 90 ~~ 91 (184)
..
T Consensus 305 ~~ 306 (319)
T 3olq_A 305 PD 306 (319)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 114
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=68.72 E-value=14 Score=25.72 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc------eEEEeecccchhHHHHHHHHHHHHhCCCe
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT------KLCFEQDCEALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~------~v~~~~~~~~~~~~rd~~v~~~l~~~gi~ 84 (184)
+.++-+.|++.|.++.++.+.+...+..+.+..++. .|+.. +. ...+-.-..++..+++.|+.
T Consensus 75 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~i~~~-~~-~~~kp~~~~~~~~~~~~g~~ 143 (205)
T 3m9l_A 75 AVELVRELAGRGYRLGILTRNARELAHVTLEAIGLADCFAEADVLGR-DE-APPKPHPGGLLKLAEAWDVS 143 (205)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGGGSCGGGEECT-TT-SCCTTSSHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCeEEEEeCCchHHHHHHHHHcCchhhcCcceEEeC-CC-CCCCCCHHHHHHHHHHcCCC
Confidence 456667788889999999998888888888888763 33332 22 11222223566677777763
No 115
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=68.53 E-value=8.4 Score=26.75 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=30.5
Q ss_pred HHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 141 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 141 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
+-+.|++.|+++.|+.+++...+..+++..+++ ++..
T Consensus 47 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgi~-~~~~ 83 (176)
T 3mmz_A 47 GIAALRKSGLTMLILSTEQNPVVAARARKLKIP-VLHG 83 (176)
T ss_dssp HHHHHHHTTCEEEEEESSCCHHHHHHHHHHTCC-EEES
T ss_pred HHHHHHHCCCeEEEEECcChHHHHHHHHHcCCe-eEeC
Confidence 455677789999999999998899999999998 5543
No 116
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=68.05 E-value=7.4 Score=27.05 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=38.8
Q ss_pred HHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 23 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 23 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+=+.|++.|+++.+..|.+...+..+++..+++.++... ......++..+++.|+
T Consensus 43 ~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~------k~k~~~~~~~~~~~~~ 97 (180)
T 1k1e_A 43 GIKMLMDADIQVAVLSGRDSPILRRRIADLGIKLFFLGK------LEKETACFDLMKQAGV 97 (180)
T ss_dssp HHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCCEEEESC------SCHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCeEEEEeCCCcHHHHHHHHHcCCceeecCC------CCcHHHHHHHHHHcCC
Confidence 444566789999999999999999999999999866332 1112345555555564
No 117
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=68.03 E-value=14 Score=24.70 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhCCC---eEEEEe-CChhHHHHHH-HHHcCcCeEEEcc
Q psy17626 134 LLECLADLDRQLKSHGG---QLFIVQ-GSPISIFQKL-KRELNFTKLCFEQ 179 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~---~L~v~~-g~~~~~l~~l-~~~~~~~~v~~n~ 179 (184)
..+.|+.+.+.+.+.|+ ...+.. |++.+.+.+. +++.+++-|+...
T Consensus 77 ~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~ 127 (156)
T 3fg9_A 77 VEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGA 127 (156)
T ss_dssp HHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEET
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECC
Confidence 44567777777777787 346677 9999999998 9999999998754
No 118
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=67.66 E-value=13 Score=26.93 Aligned_cols=68 Identities=10% Similarity=0.019 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEE---CChHHHHHHHHHHcCcceEEEeeccc---chhHHHHHHHHHHHHhCCCeEEE
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQ---GSPISIFQKLKRELNFTKLCFEQDCE---ALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~---g~~~~~l~~l~~~~~~~~v~~~~~~~---~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
.+|.-..+..+++|++=+|+- |+....+.+.+ -++.-|.....++ |.....+..+++.|++.|+++..
T Consensus 30 ~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 103 (201)
T 1vp8_A 30 ETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVR 103 (201)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 456666777778899866663 55554444433 3455565555543 55677788999999999998765
No 119
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=67.37 E-value=26 Score=23.77 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCCeEE---EEECChHHHHHHHHHHcC--cceEEEeecccc--hhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 19 CLADLDRQLKSHGGQLF---IVQGSPISIFQKLKRELN--FTKLCFEQDCEA--LWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~---v~~g~~~~~l~~l~~~~~--~~~v~~~~~~~~--~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.|..--..|+..|+.-. +..++|...|...+.+.+ ++.|+..-..-. ....|| +....++.|+++...
T Consensus 59 ~l~~sl~aL~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~vs~~fh~D--wasrAr~~gvPVlhl 133 (138)
T 2iel_A 59 EAAAAKRALEAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLD--VHTQAERFGLPVIHV 133 (138)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCTTTCHHHHTT--HHHHGGGGSSCEEEE
T ss_pred HHHHHHHHHHHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCchHHHHHhcc--HHHHHHhcCCCEEEE
Confidence 34444444567788765 888999999999999999 998888754322 233333 222223368887543
No 120
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=67.30 E-value=17 Score=23.73 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=33.0
Q ss_pred eEEEEECChHHHHHHHHHH---cCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 33 QLFIVQGSPISIFQKLKRE---LNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 33 ~L~v~~g~~~~~l~~l~~~---~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
.+.|...+.+++|..++++ .++..|..-.+ -.+.+|.+++.+ +++.|+.+.++.+
T Consensus 3 qifvvfssdpeilkeivreikrqgvrvvllysd--qdekrrrerlee-fekqgvdvrtved 60 (162)
T 2l82_A 3 QIFVVFSSDPEILKEIVREIKRQGVRVVLLYSD--QDEKRRRERLEE-FEKQGVDVRTVED 60 (162)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCEEEEEECC--SCHHHHHHHHHH-HHTTTCEEEECCS
T ss_pred eEEEEecCCHHHHHHHHHHHHhCCeEEEEEecC--chHHHHHHHHHH-HHHcCCceeeecc
Confidence 3444444445777777765 45555544332 246666666665 4788999987654
No 121
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=67.10 E-value=16 Score=25.34 Aligned_cols=67 Identities=6% Similarity=-0.000 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChH---HHHHHHHHHcCc----ceEEEeeccc---chhHHHHHHHHHHHHhCCC
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPI---SIFQKLKRELNF----TKLCFEQDCE---ALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~---~~l~~l~~~~~~----~~v~~~~~~~---~~~~~rd~~v~~~l~~~gi 83 (184)
...+.++=+.|++.|.++.|+.+.+. +.+..+.+..++ +.|+...+.. ...+-.-..+...+++.|+
T Consensus 36 ~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~ 112 (189)
T 3ib6_A 36 RKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNALQI 112 (189)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGEEEEEECCTTSSTTCCCTTSHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhheEEEEEccccccccCCCCcCHHHHHHHHHHcCC
Confidence 34556666778888999999998775 788888888886 4566655431 1112222344555555565
No 122
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=67.02 E-value=36 Score=25.19 Aligned_cols=163 Identities=9% Similarity=0.017 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHhcCC-eEEEEEC--ChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 14 RFLLECLADLDRQLKSHGG-QLFIVQG--SPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~-~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
.|..+-+..+.+.++++|. .+.+... ++.. .+..+. ..+++.|+..... +. ..+..+ +.+.+.|+++..
T Consensus 15 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiii~~~~-~~--~~~~~~-~~~~~~~iPvV~ 89 (309)
T 2fvy_A 15 NFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLL-AKGVKALAINLVD-PA--AAGTVI-EKARGQNVPVVF 89 (309)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSS-GG--GHHHHH-HHHHTTTCCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHH-HcCCCEEEEeCCC-cc--hhHHHH-HHHHHCCCcEEE
Confidence 4777888899999999997 8887754 3432 233343 4688988875321 11 112223 345667999988
Q ss_pred ecCceeec-------ccccccccCCCCchhHHHHHHHhhh--------ccccc----cCcchhHHHHHHHHHHHHHHHhC
Q psy17626 88 FVSHTLWD-------PEVVIQTNGNVPPLTYKMYLHTVSC--------IGTMH----IGYNRFRFLLECLADLDRQLKSH 148 (184)
Q Consensus 88 ~~~~~L~~-------p~~i~~~~~~~~~~v~~~F~~~~~~--------~~~~~----~~~~r~~fl~~~L~~L~~~L~~~ 148 (184)
++...--. ...+..++...-+..-......... .+..+ .++.......+.+.-+.+.|++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~ 169 (309)
T 2fvy_A 90 FNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDK 169 (309)
T ss_dssp ESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHT
T ss_pred ecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHHHHHHHHHHHHHhc
Confidence 76531100 0011111100001111111111100 11111 12222334556777788889998
Q ss_pred CCeEE---EEeCC--h---hHHHHHHHHHc---CcCeEEEcccc
Q psy17626 149 GGQLF---IVQGS--P---ISIFQKLKREL---NFTKLCFEQDC 181 (184)
Q Consensus 149 g~~L~---v~~g~--~---~~~l~~l~~~~---~~~~v~~n~~~ 181 (184)
|+++. +..++ . .+.+.++.+++ .++.||+..+.
T Consensus 170 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~ 213 (309)
T 2fvy_A 170 GIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 213 (309)
T ss_dssp TCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEESSHH
T ss_pred CCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEECCch
Confidence 98653 33432 2 24566777765 68999987553
No 123
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=66.93 E-value=18 Score=24.69 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhCCCeE--EEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 136 ECLADLDRQLKSHGGQL--FIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L--~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
+.|+.+.+.+.+.|++. .+..|++.+.|.+++++.+++-|+...
T Consensus 87 ~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~ 132 (175)
T 2gm3_A 87 HLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGS 132 (175)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeC
Confidence 44566666666667764 456799999999999999999988753
No 124
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=66.93 E-value=35 Score=25.08 Aligned_cols=153 Identities=8% Similarity=-0.023 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHH--HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPIS--IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|..+-+..+.+.+++.|..+.+... ++.. .+.+.+...+++.|+..... .. +..+. .+. .|+++..++
T Consensus 21 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~-~~----~~~~~-~l~-~~iPvV~~~ 93 (285)
T 3c3k_A 21 PFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDAL-SE----LPELQ-NII-GAFPWVQCA 93 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCG-GG----HHHHH-HHH-TTSSEEEES
T ss_pred chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC-CC----hHHHH-HHh-cCCCEEEEc
Confidence 47778888889999999999888754 3322 12223335688988875321 11 12233 345 799998876
Q ss_pred Cceeecc--cccccccCCCCchhHHHHHHHhh---hcccccc----CcchhHHHHHHHHHHHHHHHhCCCeEEEEeCC--
Q psy17626 90 SHTLWDP--EVVIQTNGNVPPLTYKMYLHTVS---CIGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLFIVQGS-- 158 (184)
Q Consensus 90 ~~~L~~p--~~i~~~~~~~~~~v~~~F~~~~~---~~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~-- 158 (184)
... -++ ..+.. ..+..-+...+ +.+-.+. +........+.+.-..+.|++.|+++.+..++
T Consensus 94 ~~~-~~~~~~~V~~-------D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~ 165 (285)
T 3c3k_A 94 EYD-PLSTVSSVSI-------DDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYSRISYAEN 165 (285)
T ss_dssp SCC-TTSSSCEEEC-------CHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCCEEEECSS
T ss_pred ccc-CCCCCCEEEE-------ChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCceEeecCCC
Confidence 432 111 11111 11111111111 1121111 22222344556677778888888765443322
Q ss_pred ---hhHHHHH--HHHHc-CcCeEEEcccc
Q psy17626 159 ---PISIFQK--LKREL-NFTKLCFEQDC 181 (184)
Q Consensus 159 ---~~~~l~~--l~~~~-~~~~v~~n~~~ 181 (184)
..+.+.+ +.++. .+++||+..|.
T Consensus 166 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 194 (285)
T 3c3k_A 166 LDYMAGKLATFSLLKSAVKPDAIFAISDV 194 (285)
T ss_dssp SSHHHHHHHHHHHHSSSSCCSEEEESSHH
T ss_pred hHHHHHHHHHHHHHcCCCCCeEEEECCHH
Confidence 2345666 66654 68999987653
No 125
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=66.87 E-value=12 Score=25.38 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhCCCe--E--EEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 135 LECLADLDRQLKSHGGQ--L--FIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~--L--~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
.+.|+.+.+.+...|++ . .+..|++.+.|.+++++.+++-|+...
T Consensus 77 ~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~ 125 (170)
T 2dum_A 77 SRKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPS 125 (170)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEES
T ss_pred HHHHHHHHHHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECC
Confidence 34566666666666764 3 566799999999999999999998754
No 126
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=66.80 E-value=7 Score=27.63 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=32.0
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEee
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 61 (184)
+.|++.|+++.|+.|++...+..+++..+++.++...
T Consensus 56 ~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~~ 92 (191)
T 3n1u_A 56 KLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKGQ 92 (191)
T ss_dssp HHHHHTTCEEEEECSCCSHHHHHHHHHHTCCEEECSC
T ss_pred HHHHHCCCeEEEEeCcChHHHHHHHHHcCCccceeCC
Confidence 4567789999999999999999999999999876654
No 127
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=66.62 E-value=12 Score=32.73 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=33.7
Q ss_pred HHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEee
Q psy17626 23 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (184)
Q Consensus 23 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 61 (184)
.-++|++.|+++.++.|+.......++++.+++.++.+-
T Consensus 562 aI~~L~~~Gi~v~mlTGd~~~~a~~ia~~lgi~~v~a~~ 600 (736)
T 3rfu_A 562 TILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEI 600 (736)
T ss_dssp HHHHHHHHTCEEEEECSSCHHHHHHHHHHHTCCCEECSC
T ss_pred HHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCEEEEec
Confidence 345567779999999999999999999999999988754
No 128
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A*
Probab=66.52 E-value=19 Score=24.68 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc----eEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT----KLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~----~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+.++-+.|++.|.++.++.+.+...+..+.+..++. .++...+... .+..-..++..+++.|+
T Consensus 89 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~-~kp~~~~~~~~~~~~~~ 155 (216)
T 2pib_A 89 VREALEFVKSKRIKLALATSTPQREALERLRRLDLEKYFDVMVFGDQVKN-GKPDPEIYLLVLERLNV 155 (216)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGGGCSEEECGGGSSS-CTTSTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCCEEEEeCCcHHhHHHHHHhcChHHhcCEEeecccCCC-CCcCcHHHHHHHHHcCC
Confidence 445667788889999999988888888888877654 4554443321 11122345555565565
No 129
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=66.11 E-value=14 Score=27.57 Aligned_cols=69 Identities=12% Similarity=0.001 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCC---eEEEEECChHHHHHHHHHHcCcceEEEeecc-cchhHH-HHHHHHHHHHhCCCeEEEe
Q psy17626 20 LADLDRQLKSHGG---QLFIVQGSPISIFQKLKRELNFTKLCFEQDC-EALWHK-RDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 20 L~~L~~~L~~~g~---~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~~-rd~~v~~~l~~~gi~~~~~ 88 (184)
...|++-+++.|+ ...+..|++.+.|.+.+++.+++-|++-..- +...+- .-....+.+....+++..+
T Consensus 201 ~~~l~~~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv 274 (290)
T 3mt0_A 201 REACRTFQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVLVL 274 (290)
T ss_dssp HHHHHHHHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEEEE
T ss_pred HHHHHHHHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEEEE
Confidence 3344444445565 4788999999999999999999999886431 111111 1223444556667887654
No 130
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=65.97 E-value=39 Score=25.17 Aligned_cols=140 Identities=11% Similarity=-0.036 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHcCcceEEEeecccc-------hhHHHHHHHHHHHHhCCCeEEEecCceeecccccccccCC---CCchh
Q psy17626 41 PISIFQKLKRELNFTKLCFEQDCEA-------LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGN---VPPLT 110 (184)
Q Consensus 41 ~~~~l~~l~~~~~~~~v~~~~~~~~-------~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~~~---~~~~v 110 (184)
+.+...+.+++.|++.|=..-.... .....-+.+++.+++.|+++..+..... .+-.+...+.. ..-..
T Consensus 31 ~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~l~~~d~~~r~~~~~~ 109 (295)
T 3cqj_A 31 CWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPSMCLSAH-RRFPLGSEDDAVRAQGLEI 109 (295)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEEEGGG-GTSCTTCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEecCcc-cCCCCCCCCHHHHHHHHHH
Confidence 4455556667778887765433211 0122335678888888888776531110 00001000000 00112
Q ss_pred HHHHHHHhhhcccccc---------C---cchhHHHHHHHHHHHHHHHhCCCeEEEEe-----CChhHHHHHHHHHcCcC
Q psy17626 111 YKMYLHTVSCIGTMHI---------G---YNRFRFLLECLADLDRQLKSHGGQLFIVQ-----GSPISIFQKLKRELNFT 173 (184)
Q Consensus 111 ~~~F~~~~~~~~~~~~---------~---~~r~~fl~~~L~~L~~~L~~~g~~L~v~~-----g~~~~~l~~l~~~~~~~ 173 (184)
+.........++.+.. + ...+..+.++|..+.+..++.|+.|.+-. ....+.+.+++++.+..
T Consensus 110 ~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~~~~~~~~~l~~~v~~~ 189 (295)
T 3cqj_A 110 MRKAIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVTLAMEIMDYPLMNSISKALGYAHYLNNP 189 (295)
T ss_dssp HHHHHHHHHHHTCCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEEEECCSSGGGCSHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcCcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEeeCCCcccCCHHHHHHHHHhcCCC
Confidence 2222333333332110 0 11235567788888888888899887754 12345677888888766
Q ss_pred eEEEcccc
Q psy17626 174 KLCFEQDC 181 (184)
Q Consensus 174 ~v~~n~~~ 181 (184)
.|-..-|.
T Consensus 190 ~vg~~~D~ 197 (295)
T 3cqj_A 190 WFQLYPDI 197 (295)
T ss_dssp TEEEECBH
T ss_pred CeEEEecc
Confidence 66665554
No 131
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=65.84 E-value=36 Score=24.82 Aligned_cols=153 Identities=10% Similarity=0.053 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhcCCe--EEEEECChHHHHHHHHHHcCcceEEEeecccc--hhHH-HHHHHHHHHHhCCCeEEEecCc
Q psy17626 17 LECLADLDRQLKSHGGQ--LFIVQGSPISIFQKLKRELNFTKLCFEQDCEA--LWHK-RDKKVKKWCAENNITVKEFVSH 91 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~--L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~--~~~~-rd~~v~~~l~~~gi~~~~~~~~ 91 (184)
.+.|..+.+.++..|++ ..+..|++.+.|.+. +.+++-|++-..-.. ..+. .-....+.+...++++..+...
T Consensus 73 ~~~l~~~~~~~~~~g~~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~~~ 150 (268)
T 3ab8_A 73 EAVLERVRQSALAAGVAVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPGE 150 (268)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEECSS
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEECCC
Confidence 44566666777777865 456789999999998 889999998754221 1111 1223445566778998877643
Q ss_pred eeecccccccccCCCCchhHHHHHH---Hhhhccc-----cccCcchhHHHHHHHHHHHHHHHhCCCeE--EEEeCChhH
Q psy17626 92 TLWDPEVVIQTNGNVPPLTYKMYLH---TVSCIGT-----MHIGYNRFRFLLECLADLDRQLKSHGGQL--FIVQGSPIS 161 (184)
Q Consensus 92 ~L~~p~~i~~~~~~~~~~v~~~F~~---~~~~~~~-----~~~~~~r~~fl~~~L~~L~~~L~~~g~~L--~v~~g~~~~ 161 (184)
.- ++..|.-.-+++... ...... .....+. +-..+ ..-..+.++++...|.+.|++. .+..|++.+
T Consensus 151 ~~-~~~~ilv~~d~s~~~-~~al~~a~~la~~~~a~l~ll~v~~~--~~~~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~ 226 (268)
T 3ab8_A 151 PV-ELEGALLGYDASESA-VRALHALAPLARALGLGVRVVSVHED--PARAEAWALEAEAYLRDHGVEASALVLGGDAAD 226 (268)
T ss_dssp CC-CCCEEEEECCSCHHH-HHHHHHHHHHHHHHTCCEEEEEECSS--HHHHHHHHHHHHHHHHHTTCCEEEEEECSCHHH
T ss_pred CC-CCCEEEEEECCCHHH-HHHHHHHHHhhhcCCCEEEEEEEcCc--HHHHHHHHHHHHHHHHHcCCceEEEEeCCChHH
Confidence 22 333443322222221 111111 1111111 11111 1223456778888888888764 345799999
Q ss_pred HHHHHHHHcCcCeEEE
Q psy17626 162 IFQKLKRELNFTKLCF 177 (184)
Q Consensus 162 ~l~~l~~~~~~~~v~~ 177 (184)
.|.+++++. +-|+.
T Consensus 227 ~i~~~a~~~--dliV~ 240 (268)
T 3ab8_A 227 HLLRLQGPG--DLLAL 240 (268)
T ss_dssp HHHHHCCTT--EEEEE
T ss_pred HHHHHHHhC--CEEEE
Confidence 999988876 55543
No 132
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}
Probab=65.82 E-value=19 Score=25.25 Aligned_cols=64 Identities=9% Similarity=0.009 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc----eEEEeecccchhHHHHHHHHHHHHhCCCe
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT----KLCFEQDCEALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~----~v~~~~~~~~~~~~rd~~v~~~l~~~gi~ 84 (184)
+.++-+.|++.|.++.++.+.+...+..+.+..++. .++...+... .+---..++..+++.|+.
T Consensus 96 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~-~kp~~~~~~~~~~~l~~~ 163 (233)
T 3s6j_A 96 AVELLETLDKENLKWCIATSGGIDTATINLKALKLDINKINIVTRDDVSY-GKPDPDLFLAAAKKIGAP 163 (233)
T ss_dssp HHHHHHHHHHTTCCEEEECSSCHHHHHHHHHTTTCCTTSSCEECGGGSSC-CTTSTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCeEEEEeCCchhhHHHHHHhcchhhhhheeeccccCCC-CCCChHHHHHHHHHhCCC
Confidence 455667777888999998888877777877776654 4444444321 222223566666777763
No 133
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=65.81 E-value=38 Score=25.07 Aligned_cols=155 Identities=7% Similarity=-0.090 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC----ChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG----SPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g----~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
.|..+-+..+.+.++++|..+.+... ++.. .+..+. ..+++.|+..-.... ..+..+ +.+.+.||++.
T Consensus 16 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiii~~~~~~---~~~~~~-~~~~~~giPvV 90 (297)
T 3rot_A 16 PYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESAL-ATYPSGIATTIPSDT---AFSKSL-QRANKLNIPVI 90 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHH-HTCCSEEEECCCCSS---TTHHHH-HHHHHHTCCEE
T ss_pred chHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHH-HcCCCEEEEeCCCHH---HHHHHH-HHHHHCCCCEE
Confidence 47777788888889999999988863 4433 233333 357898887532111 112223 33455699998
Q ss_pred EecCceeec-----ccccccccCCCCchhHHHHHHHhh---hcc--ccc----cCcchhHHHHHHHHHHHHHHHhCCCeE
Q psy17626 87 EFVSHTLWD-----PEVVIQTNGNVPPLTYKMYLHTVS---CIG--TMH----IGYNRFRFLLECLADLDRQLKSHGGQL 152 (184)
Q Consensus 87 ~~~~~~L~~-----p~~i~~~~~~~~~~v~~~F~~~~~---~~~--~~~----~~~~r~~fl~~~L~~L~~~L~~~g~~L 152 (184)
.++...--. ...+.. ..+..-+...+ +.+ ..+ .+........+.++-..+.|++.|+++
T Consensus 91 ~~~~~~~~~~~~~~~~~V~~-------D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~ 163 (297)
T 3rot_A 91 AVDTRPKDKTKNPYLVFLGS-------DNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFF 163 (297)
T ss_dssp EESCCCSCTTTSCCSCEEEC-------CHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEE
T ss_pred EEcCCCccccccCcceEEcc-------ChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeE
Confidence 876532110 011111 11111111111 112 111 122233445567788888899989887
Q ss_pred EEEeC--Ch---hHHHHHHHHHc-CcCeEEEccc
Q psy17626 153 FIVQG--SP---ISIFQKLKREL-NFTKLCFEQD 180 (184)
Q Consensus 153 ~v~~g--~~---~~~l~~l~~~~-~~~~v~~n~~ 180 (184)
....+ .. ...+.++.+++ .++.||+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 197 (297)
T 3rot_A 164 EELDVGTDPNQVQSRVKSYFKIHPETNIIFCLTS 197 (297)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHCTTCCEEEESSH
T ss_pred EEeecCCChHHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 66542 21 23455666655 6899998665
No 134
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=65.68 E-value=36 Score=24.71 Aligned_cols=154 Identities=10% Similarity=0.052 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.|..+-+..+.+.+++.|..+.+... ++.. .+..+ ...+++.|+....-. . +..+ +.+.+.|+++..+
T Consensus 16 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgii~~~~~~-~----~~~~-~~l~~~~iPvV~~ 88 (275)
T 3d8u_A 16 KACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTF-LESRPAGVVLFGSEH-S----QRTH-QLLEASNTPVLEI 88 (275)
T ss_dssp HHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHH-HTSCCCCEEEESSCC-C----HHHH-HHHHHHTCCEEEE
T ss_pred ccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHH-HhcCCCEEEEeCCCC-C----HHHH-HHHHhCCCCEEEE
Confidence 47778888899999999999877653 3332 23333 346788877753211 1 1223 3344568998887
Q ss_pred cCceeecccccccccCCCCchhHHHHHHHhhh---cccccc----CcchhHHHHHHHHHHHHHHHhCCCeE---EEEeCC
Q psy17626 89 VSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC---IGTMHI----GYNRFRFLLECLADLDRQLKSHGGQL---FIVQGS 158 (184)
Q Consensus 89 ~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~---~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L---~v~~g~ 158 (184)
+... +...+..= ....+..-....+. .+-.+. +........+.+.-..+.+++.|+++ .+..++
T Consensus 89 ~~~~--~~~~~~~V----~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 162 (275)
T 3d8u_A 89 AELS--SKASYLNI----GVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEA 162 (275)
T ss_dssp SSSC--SSSSSEEE----CBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSC
T ss_pred eecc--CCCCCCEE----EEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCC
Confidence 6432 11111000 01111111111111 111111 22222344566777888888888753 232232
Q ss_pred --hh---HHHHHHHHHc-CcCeEEEccc
Q psy17626 159 --PI---SIFQKLKREL-NFTKLCFEQD 180 (184)
Q Consensus 159 --~~---~~l~~l~~~~-~~~~v~~n~~ 180 (184)
.. +.+.++.++. .+++||+..|
T Consensus 163 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d 190 (275)
T 3d8u_A 163 PSSQLGAEGLAKLLLRDSSLNALVCSHE 190 (275)
T ss_dssp CCHHHHHHHHHHHHTTCTTCCEEEESSH
T ss_pred CChhHHHHHHHHHHhCCCCCCEEEEcCc
Confidence 22 3456666654 6899998765
No 135
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=65.63 E-value=9.2 Score=25.83 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=30.8
Q ss_pred HHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 141 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 141 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
+-+.|++.|+++.++.|.+......+++++++..++..
T Consensus 39 ~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~~ 76 (164)
T 3e8m_A 39 GIFWAHNKGIPVGILTGEKTEIVRRRAEKLKVDYLFQG 76 (164)
T ss_dssp HHHHHHHTTCCEEEECSSCCHHHHHHHHHTTCSEEECS
T ss_pred HHHHHHHCCCEEEEEeCCChHHHHHHHHHcCCCEeecc
Confidence 34556677999999999988888888999999887754
No 136
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Probab=65.47 E-value=24 Score=25.11 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc----ceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+.++-+.|++.|.++.+..+.+...+..+.+..++ +.++...+... .+..-..+...+++.|+
T Consensus 110 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~-~Kp~~~~~~~~~~~~~~ 176 (240)
T 2no4_A 110 AAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSADDLKI-YKPDPRIYQFACDRLGV 176 (240)
T ss_dssp HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEEGGGTTC-CTTSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHhcCcHHHcCEEEEccccCC-CCCCHHHHHHHHHHcCC
Confidence 44555667778899988888887777777777765 45555544321 11122344455555565
No 137
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=65.40 E-value=10 Score=26.33 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=29.4
Q ss_pred HHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEE
Q psy17626 141 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 141 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 177 (184)
+=+.|++.|+++.++.|.+...+..++++.+++.+|.
T Consensus 43 ~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~ 79 (180)
T 1k1e_A 43 GIKMLMDADIQVAVLSGRDSPILRRRIADLGIKLFFL 79 (180)
T ss_dssp HHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHCCCeEEEEeCCCcHHHHHHHHHcCCceeec
Confidence 3345566799999999988888888889999988763
No 138
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=65.11 E-value=9 Score=27.04 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=30.0
Q ss_pred HHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 143 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 143 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
+.|++.|+++.++.+.+...+..+++..|++.+|..
T Consensus 56 ~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~ 91 (191)
T 3n1u_A 56 KLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKG 91 (191)
T ss_dssp HHHHHTTCEEEEECSCCSHHHHHHHHHHTCCEEECS
T ss_pred HHHHHCCCeEEEEeCcChHHHHHHHHHcCCccceeC
Confidence 456677999999999988888889999999887754
No 139
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=64.79 E-value=15 Score=22.30 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=30.7
Q ss_pred HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 44 IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 44 ~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
...+.++.-.+.-|+...|.+| ..-..+...|+..||++..+.+
T Consensus 18 ~v~kai~~gkaklViiA~D~~~---~~~~~i~~lc~~~~Ip~~~v~s 61 (82)
T 3v7e_A 18 QTVKALKRGSVKEVVVAKDADP---ILTSSVVSLAEDQGISVSMVES 61 (82)
T ss_dssp HHHHHHTTTCEEEEEEETTSCH---HHHHHHHHHHHHHTCCEEEESC
T ss_pred HHHHHHHcCCeeEEEEeCCCCH---HHHHHHHHHHHHcCCCEEEECC
Confidence 3445556667888888888877 3445677777888888887654
No 140
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=64.30 E-value=25 Score=24.30 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCeEEEEECCh-HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSP-ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~-~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
.+.++=+.|++.|+++.|..|.+ ...+..+++..++...+-...... ..+ -..+...+++.|+
T Consensus 72 g~~e~L~~L~~~G~~v~ivT~~~~~~~~~~~l~~~gl~~~f~~~~~~~-~~k-~~~~~~~~~~~~~ 135 (187)
T 2wm8_A 72 EVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREIYP-GSK-ITHFERLQQKTGI 135 (187)
T ss_dssp THHHHHHHHHHHTCCEEEEECCSCHHHHHHHHHHTTCTTTEEEEEESS-SCH-HHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHCCceEEEEeCCCChHHHHHHHHHcCcHhhcceeEEEe-Cch-HHHHHHHHHHcCC
Confidence 34455556677799999999998 688888888888875443321111 111 1245556666665
No 141
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=63.80 E-value=15 Score=24.60 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEE
Q psy17626 140 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 140 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 177 (184)
++=+.|++.|+++.++.+.+...+..+++..++..+|.
T Consensus 43 ~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~ 80 (162)
T 2p9j_A 43 IGIKLLQKMGITLAVISGRDSAPLITRLKELGVEEIYT 80 (162)
T ss_dssp HHHHHHHTTTCEEEEEESCCCHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCHhhcc
Confidence 33445566788888888888887888888888876653
No 142
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=63.73 E-value=8.4 Score=27.01 Aligned_cols=63 Identities=14% Similarity=0.015 Sum_probs=42.7
Q ss_pred HHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCe---EEEecCc
Q psy17626 23 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNIT---VKEFVSH 91 (184)
Q Consensus 23 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~---~~~~~~~ 91 (184)
+=+.|++.|.++.|+.|++...+..+++..+++.++.... |. -..++..+++.|+. +..+.|.
T Consensus 61 ~l~~L~~~g~~v~ivT~~~~~~~~~~l~~lgl~~~~~~~k--pk----~~~~~~~~~~~g~~~~~~~~iGD~ 126 (188)
T 2r8e_A 61 GIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQS--NK----LIAFSDLLEKLAIAPENVAYVGDD 126 (188)
T ss_dssp HHHHHHTTTCEEEEECSSCCHHHHHHHHHHTCCEEECSCS--CS----HHHHHHHHHHHTCCGGGEEEEESS
T ss_pred HHHHHHHCCCeEEEEeCCChHHHHHHHHHcCCceeecCCC--CC----HHHHHHHHHHcCCCHHHEEEECCC
Confidence 3455677899999999999999999999999997765431 11 23445555555642 4444443
No 143
>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}
Probab=63.71 E-value=33 Score=23.92 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc----ceEEEeecccchhHHHHHHHHHHHHhCCCe
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDCEALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~ 84 (184)
+.++-+.|++.|.++.+..+.+...+..+.+..++ +.++...+... .+.--..+...++..|+.
T Consensus 101 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~-~kp~~~~~~~~~~~~~~~ 168 (230)
T 3um9_A 101 VPQALQQLRAAGLKTAILSNGSRHSIRQVVGNSGLTNSFDHLISVDEVRL-FKPHQKVYELAMDTLHLG 168 (230)
T ss_dssp HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHTCGGGCSEEEEGGGTTC-CTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHHCCChhhcceeEehhhccc-CCCChHHHHHHHHHhCCC
Confidence 44566777888999999998888888888777664 45666554332 121223455566666653
No 144
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=63.69 E-value=43 Score=24.94 Aligned_cols=159 Identities=9% Similarity=-0.092 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC--ChHHH--HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQG--SPISI--FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~~--l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
|..+-+..+.+.++++|..+.+... ++... +.+.+...+++.|+....-. . ... ...+.+.+.||++..++.
T Consensus 16 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-~--~~~-~~~~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 16 RWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNG-Q--VLS-NVVKEAKQEGIKVLAYDR 91 (313)
T ss_dssp TTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSST-T--SCH-HHHHHHHTTTCEEEEESS
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh-h--hhH-HHHHHHHHCCCeEEEECC
Confidence 5666777888889999999988764 33322 22333346889888764221 1 111 223345677999998865
Q ss_pred ceeeccc--ccccccCCCCch-hHHHHHHHhhhcccccc----CcchhHHHHHHHHHHHHHHHhC----CCeEEEE--eC
Q psy17626 91 HTLWDPE--VVIQTNGNVPPL-TYKMYLHTVSCIGTMHI----GYNRFRFLLECLADLDRQLKSH----GGQLFIV--QG 157 (184)
Q Consensus 91 ~~L~~p~--~i~~~~~~~~~~-v~~~F~~~~~~~~~~~~----~~~r~~fl~~~L~~L~~~L~~~----g~~L~v~--~g 157 (184)
..--..- .+..+ .+. .+..-.......+..+. +........+.+.-..+.|++. |+.+.-. .+
T Consensus 92 ~~~~~~~~~~V~~D----~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~ 167 (313)
T 3m9w_A 92 MINDADIDFYISFD----NEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVD 167 (313)
T ss_dssp CCTTSCCSEEEEEC----HHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEECG
T ss_pred cCCCCCceEEEecC----HHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEEEeeccCC
Confidence 4211110 11111 111 11111111111221111 2222233445566666777766 4443211 22
Q ss_pred --C---hhHHHHHHHHHc--CcCeEEEcccc
Q psy17626 158 --S---PISIFQKLKREL--NFTKLCFEQDC 181 (184)
Q Consensus 158 --~---~~~~l~~l~~~~--~~~~v~~n~~~ 181 (184)
+ ..+.+.++.+++ .+++||+..+.
T Consensus 168 ~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~ 198 (313)
T 3m9w_A 168 GWLPENALKIMENALTANNNKIDAVVASNDA 198 (313)
T ss_dssp GGCHHHHHHHHHHHHHHTTTCCCEEEESSHH
T ss_pred CcCHHHHHHHHHHHHHhCCCCeeEEEECCCc
Confidence 1 234677787775 89999987653
No 145
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A
Probab=63.50 E-value=16 Score=25.92 Aligned_cols=34 Identities=26% Similarity=0.214 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc
Q psy17626 21 ADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 54 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 54 (184)
.++-+.|++.|.++.|+.+.+...+..+++..++
T Consensus 89 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl 122 (222)
T 2nyv_A 89 PYTLEALKSKGFKLAVVSNKLEELSKKILDILNL 122 (222)
T ss_dssp HHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 3344455556667766666666656666666553
No 146
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=63.41 E-value=25 Score=26.16 Aligned_cols=63 Identities=17% Similarity=0.100 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCeEEEEE--CC---hHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 21 ADLDRQLKSHGGQLFIVQ--GS---PISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~--g~---~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
...+..-+.+|+|++++. |+ -.+.+.++.++.+++.|++-.-...+.+.|- .+.|.+.|++..
T Consensus 53 e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi~s~yqr~r~---e~vc~~~gl~~~ 120 (237)
T 3rjz_A 53 NLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGALASKYQRKRI---EKVAKELGLEVY 120 (237)
T ss_dssp SHHHHHHHHHTCCEEEEEC------CHHHHHHHHTTSCCSEEECC---CCSHHHHH---HHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCcchHHHHHHH---HHHHHHcCCEEE
Confidence 344455566799999875 32 3456777777789999988765555555554 555677788755
No 147
>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A
Probab=63.00 E-value=16 Score=25.84 Aligned_cols=63 Identities=10% Similarity=-0.004 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc----ceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+.++-+.|++.|.++.++.+.+...+..+.+..++ +.++...+.. ...---..++.++++.|+
T Consensus 109 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~-~~kp~~~~~~~~~~~lg~ 175 (237)
T 4ex6_A 109 VLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGLDTRLTVIAGDDSVE-RGKPHPDMALHVARGLGI 175 (237)
T ss_dssp HHHHHHHHHHTTEEEEEECSSCHHHHHHHHHHHTGGGTCSEEECTTTSS-SCTTSSHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcEEEEcCCChHHHHHHHHHcCchhheeeEEeCCCCC-CCCCCHHHHHHHHHHcCC
Confidence 44666778888999999998888888888887765 4455544332 122222355556666666
No 148
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=62.68 E-value=35 Score=23.56 Aligned_cols=82 Identities=9% Similarity=0.001 Sum_probs=49.2
Q ss_pred HHHHHHHHHH----hcCCeEEEEECChHHHHHHHHHHc--CcceEEEeec-ccchhHHHHHHHHHHHHhCCCeEEEecCc
Q psy17626 19 CLADLDRQLK----SHGGQLFIVQGSPISIFQKLKREL--NFTKLCFEQD-CEALWHKRDKKVKKWCAENNITVKEFVSH 91 (184)
Q Consensus 19 sL~~L~~~L~----~~g~~L~v~~g~~~~~l~~l~~~~--~~~~v~~~~~-~~~~~~~rd~~v~~~l~~~gi~~~~~~~~ 91 (184)
+|.++.+.|+ ++|..+.+++.+.+..|-+...+. +++.|+.|.. |+.+.....+.++. +...++++.+++-.
T Consensus 30 Tl~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~-l~~~~~P~VEVHiS 108 (151)
T 3u80_A 30 DLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALADAAHM-VIDENLPLMEVHIS 108 (151)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCHHHHHHHHH-HHHTTCCEEEEESS
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHH-HhhcCCCEEEEEcC
Confidence 4444444443 468999999988877666665542 4678888854 45555544434332 33457999999888
Q ss_pred eeeccccccc
Q psy17626 92 TLWDPEVVIQ 101 (184)
Q Consensus 92 ~L~~p~~i~~ 101 (184)
.++..+.++.
T Consensus 109 Ni~aRE~FRh 118 (151)
T 3u80_A 109 NPSARDEFRK 118 (151)
T ss_dssp CCC-------
T ss_pred Ccccccchhh
Confidence 8887777655
No 149
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=62.66 E-value=11 Score=30.26 Aligned_cols=46 Identities=28% Similarity=0.334 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCc------CeEEEcc
Q psy17626 134 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF------TKLCFEQ 179 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~------~~v~~n~ 179 (184)
+.....+|-+.|++.|+...|++|+....+..++++.|+ ++|+.|+
T Consensus 222 ~~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia~~lg~~y~ip~~~Vig~~ 273 (385)
T 4gxt_A 222 TLDEMVDLYRSLEENGIDCYIVSASFIDIVRAFATDTNNNYKMKEEKVLGLR 273 (385)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHCTTSSCCCCGGGEEEEC
T ss_pred eCHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCcccCCCcceEEEeE
Confidence 457788999999999999999999999999999998754 5677653
No 150
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=62.53 E-value=11 Score=26.43 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=28.0
Q ss_pred HHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 141 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 141 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
+-+.|++.|+++.++.|.+...+..+++..+++.+|..
T Consensus 61 ~l~~L~~~g~~v~ivT~~~~~~~~~~l~~lgl~~~~~~ 98 (188)
T 2r8e_A 61 GIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQG 98 (188)
T ss_dssp HHHHHHTTTCEEEEECSSCCHHHHHHHHHHTCCEEECS
T ss_pred HHHHHHHCCCeEEEEeCCChHHHHHHHHHcCCceeecC
Confidence 33456667888888888877777888888888876643
No 151
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Probab=62.14 E-value=30 Score=24.27 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc----ceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+.++-+.|++.|.++.+..+.+...+..+.+..++ +.++...+... .+..-..+...+++.|+
T Consensus 100 ~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~-~Kp~~~~~~~~~~~~~~ 166 (232)
T 1zrn_A 100 VPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDGFDHLLSVDPVQV-YKPDNRVYELAEQALGL 166 (232)
T ss_dssp HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEESGGGTC-CTTSHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhcChHhhhheEEEecccCC-CCCCHHHHHHHHHHcCC
Confidence 34455566677888888877776666666766664 34554443321 11112234444555454
No 152
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=61.41 E-value=12 Score=27.51 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHcCcceEEEeecccch--hHHHHHHHHHHHHhCCCeEEEe
Q psy17626 41 PISIFQKLKRELNFTKLCFEQDCEAL--WHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 41 ~~~~l~~l~~~~~~~~v~~~~~~~~~--~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
+.+...+.+++.|++.|=.....-+. ....-+.+++.+++.|+++..+
T Consensus 31 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 80 (257)
T 3lmz_A 31 DLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAV 80 (257)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 33444444555555555333221011 1122235555666666665544
No 153
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=61.32 E-value=33 Score=25.14 Aligned_cols=39 Identities=10% Similarity=-0.043 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHH-hCCCeEEEEeC--------ChhHHHHHHHHHc
Q psy17626 132 RFLLECLADLDRQLK-SHGGQLFIVQG--------SPISIFQKLKREL 170 (184)
Q Consensus 132 ~fl~~~L~~L~~~L~-~~g~~L~v~~g--------~~~~~l~~l~~~~ 170 (184)
..+.++|..+.+..+ +.|+.|.+-.- ...+.+.+++++.
T Consensus 115 ~~~~~~l~~l~~~a~~~~gv~l~lEn~~~~~~~~~~~~~~~~~l~~~v 162 (270)
T 3aam_A 115 ERVKEGALKALRLAGVRSRPVLLVENTAGGGEKVGARFEELAWLVADT 162 (270)
T ss_dssp HHHHHHHHHHHHHHTCCSSSEEEEECCCCCTTBSCCSHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhcccCCCEEEEecCCCCCCccCCCHHHHHHHHHhC
Confidence 445556666655554 56666655421 1344455555554
No 154
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=61.31 E-value=21 Score=23.89 Aligned_cols=46 Identities=9% Similarity=0.027 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEe
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 60 (184)
--+..|.++.+++++.|..++.+.-+..+.+.+++++++++-.+..
T Consensus 53 ~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~ 98 (163)
T 3gkn_A 53 TEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVS 98 (163)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEE
Confidence 4567889999999999999999988888999999999887755443
No 155
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=61.08 E-value=23 Score=23.71 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 174 (184)
...|.++.+++.+.|..++.+.-|..+.+.+++++++++-
T Consensus 55 ~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~ 94 (163)
T 3gkn_A 55 GLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAF 94 (163)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCc
Confidence 4567888888888899988888888888999999887653
No 156
>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}
Probab=61.05 E-value=34 Score=23.93 Aligned_cols=64 Identities=9% Similarity=0.011 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc----ceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
.+.++-+.|++.|.++.+..+.+...+..+.+..++ +.++...+... .+---..+...+++.|+
T Consensus 103 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~-~kp~~~~~~~~~~~~~~ 170 (233)
T 3umb_A 103 ENVPVLRQLREMGLPLGILSNGNPQMLEIAVKSAGMSGLFDHVLSVDAVRL-YKTAPAAYALAPRAFGV 170 (233)
T ss_dssp THHHHHHHHHTTTCCEEEEESSCHHHHHHHHHTTTCTTTCSEEEEGGGTTC-CTTSHHHHTHHHHHHTS
T ss_pred CHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHHCCcHhhcCEEEEecccCC-CCcCHHHHHHHHHHhCC
Confidence 345566778888999999998888888888887764 45555544332 11112244555565565
No 157
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=60.79 E-value=7.1 Score=17.94 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhc
Q psy17626 15 FLLECLADLDRQLKSH 30 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~ 30 (184)
=++.-|.+|++.|+++
T Consensus 5 elykeledlqerlrkl 20 (27)
T 3twe_A 5 ELYKELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3667788888888764
No 158
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=60.69 E-value=46 Score=24.24 Aligned_cols=149 Identities=13% Similarity=0.095 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC-h--HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGS-P--ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~-~--~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
.|..+-+..+.+.++++|..+.+...+ + ...+.+.+...+++.|++..+ .. +..+.. .|+++..++.
T Consensus 18 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~--~~----~~~~~~----~~iPvV~~~~ 87 (280)
T 3gyb_A 18 PWFIDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPDGIIIAQD--IP----DFTVPD----SLPPFVIAGT 87 (280)
T ss_dssp GGGHHHHHHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHHTTCCSEEEEESC--C----------------CCCEEEESC
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHhCCCCEEEecCC--CC----hhhHhh----cCCCEEEECC
Confidence 366777888899999999999988654 1 112333345568999883222 11 122322 6899988765
Q ss_pred ce-eec-ccccccccCCCCchhHHHHHHHhhh---cccccc---CcchhHHHHHHHHHHHHHHHhCCCeEEE--EeC--C
Q psy17626 91 HT-LWD-PEVVIQTNGNVPPLTYKMYLHTVSC---IGTMHI---GYNRFRFLLECLADLDRQLKSHGGQLFI--VQG--S 158 (184)
Q Consensus 91 ~~-L~~-p~~i~~~~~~~~~~v~~~F~~~~~~---~~~~~~---~~~r~~fl~~~L~~L~~~L~~~g~~L~v--~~g--~ 158 (184)
.. --+ ...+.. ..+..-+...+. .+-.+. +..... ..+.+.-+.+.+++.|.+... ..+ +
T Consensus 88 ~~~~~~~~~~V~~-------D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~-~~~R~~gf~~~l~~~~~~~~~~~~~~~~~ 159 (280)
T 3gyb_A 88 RITQASTHDSVAN-------DDFRGAEIATKHLIDLGHTHIAHLRVGSGA-GLRRFESFEATMRAHGLEPLSNDYLGPAV 159 (280)
T ss_dssp CCSSSCSTTEEEE-------CHHHHHHHHHHHHHHTTCCSEEEECCSSHH-HHHHHHHHHHHHHHTTCCCEECCCCSCCC
T ss_pred CCCCCCCCCEEEe-------chHHHHHHHHHHHHHCCCCeEEEEeCCCch-HHHHHHHHHHHHHHcCcCCCcccccCCCC
Confidence 43 100 111111 111111111111 121111 111112 566777788889998887652 222 1
Q ss_pred ---hhHHHHHHHHHc-CcCeEEEccc
Q psy17626 159 ---PISIFQKLKREL-NFTKLCFEQD 180 (184)
Q Consensus 159 ---~~~~l~~l~~~~-~~~~v~~n~~ 180 (184)
..+.+.++.++. .+++||+..+
T Consensus 160 ~~~~~~~~~~~l~~~~~~~ai~~~~d 185 (280)
T 3gyb_A 160 EHAGYTETLALLKEHPEVTAIFSSND 185 (280)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEESSH
T ss_pred HHHHHHHHHHHHhCCCCCCEEEECCh
Confidence 234566777665 6899998765
No 159
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=60.36 E-value=30 Score=22.28 Aligned_cols=44 Identities=11% Similarity=0.237 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhCCCe--EEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 134 LLECLADLDRQLKSHGGQ--LFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~--L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
..+.|+.+.+.+.+.|++ ..+..|++.+.+.+.++ +++-|+...
T Consensus 64 ~~~~l~~~~~~~~~~g~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~ 109 (138)
T 3idf_A 64 AKLLTQKFSTFFTEKGINPFVVIKEGEPVEMVLEEAK--DYNLLIIGS 109 (138)
T ss_dssp HHHHHHHHHHHHHTTTCCCEEEEEESCHHHHHHHHHT--TCSEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEecCChHHHHHHHHh--cCCEEEEeC
Confidence 445677777778777765 56678999999999988 898888653
No 160
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=60.26 E-value=48 Score=24.38 Aligned_cols=153 Identities=12% Similarity=0.029 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChH---H---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeE
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPI---S---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
.|..+-+..+.+.+++.|..+.+... ++. + .+..+ ...+++.|+....... +..+. .+.+.|+++
T Consensus 21 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~-----~~~~~-~l~~~~iPv 93 (290)
T 2rgy_A 21 SYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFL-IGRDCDGVVVISHDLH-----DEDLD-ELHRMHPKM 93 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHH-HHTTCSEEEECCSSSC-----HHHHH-HHHHHCSSE
T ss_pred chHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHH-HhcCccEEEEecCCCC-----HHHHH-HHhhcCCCE
Confidence 47778888899999999999888743 222 2 33333 4568998887532211 12232 344568999
Q ss_pred EEecCceeecc--cccccccCCCCchhHHHHHHHhh---hcccccc----CcchhHHHHHHHHHHHHHHHhCCCeE---E
Q psy17626 86 KEFVSHTLWDP--EVVIQTNGNVPPLTYKMYLHTVS---CIGTMHI----GYNRFRFLLECLADLDRQLKSHGGQL---F 153 (184)
Q Consensus 86 ~~~~~~~L~~p--~~i~~~~~~~~~~v~~~F~~~~~---~~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L---~ 153 (184)
..++... -++ ..+.. ..+..-+...+ +.+-.+. +........+.+.-..+.|++.|+++ .
T Consensus 94 V~~~~~~-~~~~~~~V~~-------D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~ 165 (290)
T 2rgy_A 94 VFLNRAF-DALPDASFCP-------DHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVP 165 (290)
T ss_dssp EEESSCC-TTSGGGEECC-------CHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSC
T ss_pred EEEcccc-CCCCCCEEEe-------CcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCccc
Confidence 8876431 111 11111 11111111111 1121111 22222334566777888888888753 2
Q ss_pred EEeCC--h---hHHHHHHHHHc-CcCeEEEcccc
Q psy17626 154 IVQGS--P---ISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 154 v~~g~--~---~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
+..++ . .+.+.++.++. .+++||+..|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 199 (290)
T 2rgy_A 166 LIESDFSPEGGYAATCQLLESKAPFTGLFCANDT 199 (290)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCCSEEEESSHH
T ss_pred EEecCCChhHHHHHHHHHHhCCCCCcEEEECCcH
Confidence 34432 2 24566676654 79999987653
No 161
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}
Probab=60.15 E-value=31 Score=24.61 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=5.2
Q ss_pred HHhcCCeEEEEEC
Q psy17626 27 LKSHGGQLFIVQG 39 (184)
Q Consensus 27 L~~~g~~L~v~~g 39 (184)
|++.|.++.|..+
T Consensus 122 l~~~g~~~~i~t~ 134 (240)
T 2hi0_A 122 LRQKGVKLAVVSN 134 (240)
T ss_dssp HHHTTCEEEEEEE
T ss_pred HHHCCCEEEEEeC
Confidence 3333444444433
No 162
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6
Probab=60.13 E-value=28 Score=25.04 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=14.2
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcC
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELN 53 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~ 53 (184)
+.|++.|.++.|+.+.+...+..+++..+
T Consensus 124 ~~l~~~g~~~~i~t~~~~~~~~~~l~~~g 152 (243)
T 2hsz_A 124 EALKAQGYILAVVTNKPTKHVQPILTAFG 152 (243)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHHHTT
T ss_pred HHHHHCCCEEEEEECCcHHHHHHHHHHcC
Confidence 33444455555555554444444444444
No 163
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Probab=59.74 E-value=39 Score=23.08 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEE
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 58 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~ 58 (184)
..++-+.|++.|+++.+..|.+...+..+.+..+++.++
T Consensus 81 ~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~~~~~~~ 119 (211)
T 1l7m_A 81 AEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAF 119 (211)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCeEE
Confidence 334444555566666666666555555555555555443
No 164
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=59.56 E-value=51 Score=24.45 Aligned_cols=155 Identities=12% Similarity=0.023 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC--hH--HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGS--PI--SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~--~~--~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|..+-+..+.+.++++|..+.+...+ +. ..+.+.+...+++.|+..-...... +.+. .+.+ |+++..++
T Consensus 28 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~-~l~~-~iPvV~i~ 101 (303)
T 3kke_A 28 AVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDD----DMLA-AVLE-GVPAVTIN 101 (303)
T ss_dssp TTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCH----HHHH-HHHT-TSCEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcH----HHHH-HHhC-CCCEEEEC
Confidence 377778888899999999999887643 22 2344445567899988864322111 1333 3455 99998876
Q ss_pred CceeecccccccccCCCCchhHHHHHHHhhh---cccccc----CcchhHHHHHHHHHHHHHHHhCCCeEE---EEeCC-
Q psy17626 90 SHTLWDPEVVIQTNGNVPPLTYKMYLHTVSC---IGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLF---IVQGS- 158 (184)
Q Consensus 90 ~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~---~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~---v~~g~- 158 (184)
...--....|..+ .+..-+...+. .+-.+. +........+.+.-..+.|++.|+++. +..++
T Consensus 102 ~~~~~~~~~V~~D-------~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~ 174 (303)
T 3kke_A 102 SRVPGRVGSVILD-------DQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGW 174 (303)
T ss_dssp CCCTTCCCEEEEC-------HHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCS
T ss_pred CcCCCCCCEEEEC-------cHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCC
Confidence 5321011112111 11111111111 121111 222234455677778888999898653 44432
Q ss_pred -h---hHHHHHH-----HHH-cCcCeEEEcccc
Q psy17626 159 -P---ISIFQKL-----KRE-LNFTKLCFEQDC 181 (184)
Q Consensus 159 -~---~~~l~~l-----~~~-~~~~~v~~n~~~ 181 (184)
. .+.+.++ .++ ..+++||+..|.
T Consensus 175 ~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~nd~ 207 (303)
T 3kke_A 175 EADAGSAALNTLYRGANLGKPDGPTAVVVASVN 207 (303)
T ss_dssp SHHHHHHHHHHHHHHHCTTSTTSCSEEEESSHH
T ss_pred ChHHHHHHHHHhcchhhhcCCCCCcEEEECCHH
Confidence 2 2345566 443 368999987653
No 165
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=59.47 E-value=49 Score=24.22 Aligned_cols=151 Identities=6% Similarity=0.059 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.|..+-+..+.+.+++.|..+.+... ++.. .+..+. ..+++.|+..-..... ..++.. .|+++..+
T Consensus 20 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~-----~~~~~l---~~iPvV~~ 90 (288)
T 2qu7_A 20 PFFTEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFV-SQNVSAIILVPVKSKF-----QMKREW---LKIPIMTL 90 (288)
T ss_dssp HHHHHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHH-HTTEEEEEECCSSSCC-----CCCGGG---GGSCEEEE
T ss_pred chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH-HcCccEEEEecCCCCh-----HHHHHh---cCCCEEEE
Confidence 47778888899999999999888754 3322 344444 4678888875322111 112222 48998877
Q ss_pred cCceeec-ccccccccCCCCchhHHHHHHHhhh---cccccc----CcchhHHHHHHHHHHHHHHHhCCCeEE---EE--
Q psy17626 89 VSHTLWD-PEVVIQTNGNVPPLTYKMYLHTVSC---IGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLF---IV-- 155 (184)
Q Consensus 89 ~~~~L~~-p~~i~~~~~~~~~~v~~~F~~~~~~---~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~---v~-- 155 (184)
+...--+ ...+.. ..+..-+...+. .+-.+. +........+.+.-+.+.|++.|+++. +.
T Consensus 91 ~~~~~~~~~~~V~~-------d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~ 163 (288)
T 2qu7_A 91 DRELESTSLPSITV-------DNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYS 163 (288)
T ss_dssp SCCCSSCCCCEEEE-------CHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEEC
T ss_pred ecccCCCCCCEEEE-------CcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEec
Confidence 6432100 011111 111111111111 121111 122223445667778888888887642 44
Q ss_pred eCCh---------hHHHHHHHHHcCcCeEEEcccc
Q psy17626 156 QGSP---------ISIFQKLKRELNFTKLCFEQDC 181 (184)
Q Consensus 156 ~g~~---------~~~l~~l~~~~~~~~v~~n~~~ 181 (184)
.++. .+.+.++.+. ++++||+..+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~l~~-~~~ai~~~~d~ 197 (288)
T 2qu7_A 164 DQQLGTNAQIYSGYEATKTLLSK-GIKGIVATNHL 197 (288)
T ss_dssp CSSCSHHHHHHHHHHHHHHHHHT-TCCEEEECSHH
T ss_pred cCCccccCCHHHHHHHHHHHHhc-CCCEEEECCcH
Confidence 4432 2345666666 89999987653
No 166
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}
Probab=58.47 E-value=18 Score=27.96 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
...++-+.|++.|.++.++.+.+...+..+++..|++.+|.+.
T Consensus 183 g~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l~~lgl~~~f~~~ 225 (317)
T 4eze_A 183 GLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDYAFSNT 225 (317)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEEC
T ss_pred CHHHHHHHHHhCCCEEEEEeCccHHHHHHHHHHcCCCeEEEEE
Confidence 4455666788889999999999999999999999999988754
No 167
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10
Probab=58.31 E-value=51 Score=24.16 Aligned_cols=74 Identities=8% Similarity=0.170 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcce----------EEE-eecc--c-chhHHHHHHHHHHHHhCCCe
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK----------LCF-EQDC--E-ALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~----------v~~-~~~~--~-~~~~~rd~~v~~~l~~~gi~ 84 (184)
....|++ ++.|+.+.+..|.+...+..+.+..+.+. |+. +... . +-....-+.+.+.+++.++.
T Consensus 24 ~~~al~~--~~~Gi~v~iaTGR~~~~~~~~~~~l~~~~~~~I~~NGa~i~~~~~~~i~~~~l~~~~~~~i~~~~~~~~~~ 101 (268)
T 1nf2_A 24 DRRNIEK--LSRKCYVVFASGRMLVSTLNVEKKYFKRTFPTIAYNGAIVYLPEEGVILNEKIPPEVAKDIIEYIKPLNVH 101 (268)
T ss_dssp HHHHHHH--HTTTSEEEEECSSCHHHHHHHHHHHSSSCCCEEEGGGTEEEETTTEEEEECCBCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHH--HhCCCEEEEECCCChHHHHHHHHHhCCCCCeEEEeCCeEEECCCCCEEEecCCCHHHHHHHHHHHHhCCCE
Confidence 3445555 56799999999999998889988888764 332 1111 0 11223334556666666777
Q ss_pred EEEecCceee
Q psy17626 85 VKEFVSHTLW 94 (184)
Q Consensus 85 ~~~~~~~~L~ 94 (184)
+..+.+...+
T Consensus 102 ~~~~~~~~~~ 111 (268)
T 1nf2_A 102 WQAYIDDVLY 111 (268)
T ss_dssp EEEECSSCEE
T ss_pred EEEEECCEEE
Confidence 7666554443
No 168
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=57.48 E-value=43 Score=24.83 Aligned_cols=50 Identities=8% Similarity=-0.049 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCeEEEEe-----CChhHHHHHHHHHcCcCeEEEccc
Q psy17626 131 FRFLLECLADLDRQLKSHGGQLFIVQ-----GSPISIFQKLKRELNFTKLCFEQD 180 (184)
Q Consensus 131 ~~fl~~~L~~L~~~L~~~g~~L~v~~-----g~~~~~l~~l~~~~~~~~v~~n~~ 180 (184)
+..+.++|..+....++.|+.|.+-. ....+.+.+++++.+-..|-+.-|
T Consensus 136 ~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~l~~~~~~~~vg~~~D 190 (301)
T 3cny_A 136 WDEVCKGLNHYGEIAAKYGLKVAYHHHMGTGIQTKEETDRLMANTDPKLVGLLYD 190 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECCTTSSSCSHHHHHHHHHTSCTTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEecCCCcccCCHHHHHHHHHhCCccceeEEec
Confidence 45567777888777778888777643 133456777777776554544444
No 169
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=57.44 E-value=59 Score=24.50 Aligned_cols=154 Identities=12% Similarity=0.115 Sum_probs=79.4
Q ss_pred HhcCCeEEEEEC---ChHHHHHHHHHHcCcceEEEeecc-cch-----hHHHHHHHHHHHHhCCCeEEEecCce-eeccc
Q psy17626 28 KSHGGQLFIVQG---SPISIFQKLKRELNFTKLCFEQDC-EAL-----WHKRDKKVKKWCAENNITVKEFVSHT-LWDPE 97 (184)
Q Consensus 28 ~~~g~~L~v~~g---~~~~~l~~l~~~~~~~~v~~~~~~-~~~-----~~~rd~~v~~~l~~~gi~~~~~~~~~-L~~p~ 97 (184)
.++|+.+..... .+.+.+.+.+++.|.+.|=+.-.. .+. ....-+.+++.+++.|+++....... -+...
T Consensus 20 ~~lgi~~~~~~~~~~~~~~~~~~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~i~~~~~~~~~~~~~ 99 (316)
T 3qxb_A 20 MKLGVNLCFAVKRWLEPDRLAGLVRDDLGLEYVQYTYDLTDPWWPDIERDRRAIAYAKAFRKAGLTIESTFGGLASYTYN 99 (316)
T ss_dssp CCEEEEGGGGTTTSCSHHHHHHHHHHTSCCCEEEEETTTSCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTSC
T ss_pred ccceecchHHHhccCCHHHHHHHHHHHcCCCEEEeeccccCccccccchhhHHHHHHHHHHHcCCeEEEeeccccccccc
Confidence 344444443332 356667778888899888554332 111 11133577888899999887643210 00000
Q ss_pred ccccccCC---CCchhHHHHHHHhhhcccccc----Cc-------------chhHHHHHHHHHHHHHHHhCCCe-EEEEe
Q psy17626 98 VVIQTNGN---VPPLTYKMYLHTVSCIGTMHI----GY-------------NRFRFLLECLADLDRQLKSHGGQ-LFIVQ 156 (184)
Q Consensus 98 ~i~~~~~~---~~~~v~~~F~~~~~~~~~~~~----~~-------------~r~~fl~~~L~~L~~~L~~~g~~-L~v~~ 156 (184)
.+...+.. ..-..+.........++.+.. +. ..+..+.++|..+....++.|+. |.+-.
T Consensus 100 ~l~~~d~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~l~lE~ 179 (316)
T 3qxb_A 100 HFLAPTLELQSLGYQHLKRAIDMTAAMEVPATGMPFGSYSAADALNPARREEIYAIARDMWIELAAYAKRQGLSMLYVEP 179 (316)
T ss_dssp BTTCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCBBCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCcCccccCCcccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 11000000 000112223333344443221 10 11245677888888888888999 77643
Q ss_pred -------CChhHHHHHHHHHc---CcCeEEEcccc
Q psy17626 157 -------GSPISIFQKLKREL---NFTKLCFEQDC 181 (184)
Q Consensus 157 -------g~~~~~l~~l~~~~---~~~~v~~n~~~ 181 (184)
+...+.+.++++.. +-..|-..-|.
T Consensus 180 ~~~~~~~~~t~~~~~~l~~~v~~~~~~~vg~~lD~ 214 (316)
T 3qxb_A 180 VPLATEFPSSAADAARLMADLDGRTEIPVRLLVDW 214 (316)
T ss_dssp CSCTTBSSCSHHHHHHHHHHHTTTSSSCEEEEEEH
T ss_pred cCCccccCCCHHHHHHHHHHHhccCCCCEEEEEEc
Confidence 23455566777777 66667665554
No 170
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=57.43 E-value=43 Score=22.84 Aligned_cols=66 Identities=17% Similarity=0.034 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEE-------------CChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHH
Q psy17626 12 RFRFLLECLADLDRQLKSHGGQLFIVQ-------------GSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWC 78 (184)
Q Consensus 12 r~~fl~~sL~~L~~~L~~~g~~L~v~~-------------g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l 78 (184)
+-+.=++-|..|++.-.+.++++.+.. |+....|.+++++.++. |++| |+ .+.+.+
T Consensus 52 ~GrrGLe~L~~L~~~~~~~~i~vei~~~r~~~~~i~~~~~~~vD~~l~~lA~~~~a~-lvTn-D~---------~l~kvA 120 (142)
T 3i8o_A 52 IGYKGIEELRKLIEKASEHNIKVEYYGERPTREEIFLAKSGEIDAMIRKVAKETNSI-LLTS-DW---------IQYNLA 120 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEESCCCCHHHHHSCCSSSHHHHHHHHHHHTTCE-EEES-CH---------HHHHHH
T ss_pred hhHHHHHHHHHHHHHhhccCceEEEecccCchhhhccccCCcHHHHHHHHHHHhCCE-EEcC-CH---------HHHHHH
Confidence 333445556666654455688888763 45566799999998863 3343 43 456666
Q ss_pred HhCCCeEEEe
Q psy17626 79 AENNITVKEF 88 (184)
Q Consensus 79 ~~~gi~~~~~ 88 (184)
+..||++...
T Consensus 121 ~~~GI~V~~l 130 (142)
T 3i8o_A 121 KAQGIEAYFL 130 (142)
T ss_dssp HHTTCCEEEC
T ss_pred HHcCCEEEEe
Confidence 7789998753
No 171
>4exb_A Putative uncharacterized protein; aldo-keto reductase, NADP+ binding, oxidoreducta; 2.75A {Pseudomonas aeruginosa} PDB: 4exa_A
Probab=57.39 E-value=60 Score=24.59 Aligned_cols=123 Identities=15% Similarity=0.082 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCC---eEEEEECC-----------hHHHHHHHHHHcCcceEEEee------------------cccchh
Q psy17626 20 LADLDRQLKSHGG---QLFIVQGS-----------PISIFQKLKRELNFTKLCFEQ------------------DCEALW 67 (184)
Q Consensus 20 L~~L~~~L~~~g~---~L~v~~g~-----------~~~~l~~l~~~~~~~~v~~~~------------------~~~~~~ 67 (184)
..+++++|+++|. .|+.++.. ..+.+.++.++-.|.+|-++. +|.+..
T Consensus 136 ~~~~e~SL~rLg~dyiDl~llH~p~~d~~~~~~~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~Q~~~~~~~ 215 (292)
T 4exb_A 136 RRSVERSLKRLETDRIELVLVHSDGNDLDILENSEVYPTLAALKREGLIGAYGLSGKTVEGGLRALREGDCAMVTYNLNE 215 (292)
T ss_dssp HHHHHHHHHHTTSSCEEEEEEECCSCHHHHHHHSSHHHHHHHHHHTTSEEEEEEECSSHHHHHHHHHHSSEEEEECSSSC
T ss_pred HHHHHHHHHHhCCCceeEEEEecCCCCccccchHHHHHHHHHHHHCCCceEEEeCCCCHHHHHHHHHhhcEEeecccccc
Confidence 4567778888874 57777643 344566677666666665543 222222
Q ss_pred HHHHHHHHHHHHhCCCeEEEecCceeecccccccccCCCCchhHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHH
Q psy17626 68 HKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLK 146 (184)
Q Consensus 68 ~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~~~~~~~~~~~r~~fl~~~L~~L~~~L~ 146 (184)
+.. ..+...|++.||.+..+.- +..+.+..+.+.++..+--.|.........+-.+..++.-+.+.+..++..|.
T Consensus 216 ~~~-~~l~~~~~~~gi~v~a~sp---L~~G~L~~~~g~t~aqvaL~w~l~~~~v~~vI~g~~~~~~l~en~~a~~~~Ls 290 (292)
T 4exb_A 216 RAE-RPVIEYAAAHAKGILVKKA---LASGHACLGAGQDPVRASFELVFDQPGVAAAIVGTINPLHLAHNVAMAAQALK 290 (292)
T ss_dssp CTT-HHHHHHHHHTTCEEEEECC---SCC--------CCHHHHHHHHHHHSTTCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_pred CCH-HHHHHHHHHCCcEEEEecc---ccCCccCCCCCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHHhhccCC
Confidence 222 3566777777777765531 11111111111112222222222111112334455666667777777666653
No 172
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}
Probab=57.32 E-value=37 Score=23.20 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 54 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 54 (184)
..+.++=+.|++.| ++.+..+.+...+..+++..++
T Consensus 89 ~~~~~~l~~l~~~g-~~~i~s~~~~~~~~~~l~~~~~ 124 (200)
T 3cnh_A 89 PEVLALARDLGQRY-RMYSLNNEGRDLNEYRIRTFGL 124 (200)
T ss_dssp HHHHHHHHHHTTTS-EEEEEECCCHHHHHHHHHHHTG
T ss_pred ccHHHHHHHHHHcC-CEEEEeCCcHHHHHHHHHhCCH
Confidence 45566667777788 8888888877777777777665
No 173
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=57.23 E-value=31 Score=22.25 Aligned_cols=34 Identities=9% Similarity=0.001 Sum_probs=27.0
Q ss_pred HhCCCe---EEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 146 KSHGGQ---LFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 146 ~~~g~~---L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
++.|++ ..+..|++.+.+.+.+++.+++-|+...
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~ 110 (141)
T 1jmv_A 74 ESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGH 110 (141)
T ss_dssp HHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeC
Confidence 344654 4566799999999999999999998754
No 174
>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A
Probab=57.19 E-value=24 Score=25.46 Aligned_cols=65 Identities=14% Similarity=-0.026 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc----e-EEEeecccchhHHHHHHHHHHHHhCCCe
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT----K-LCFEQDCEALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~----~-v~~~~~~~~~~~~rd~~v~~~l~~~gi~ 84 (184)
+.++-+.|++.|.++.|+.+.+...+..+.+..++. . ++...+.....+---..++..++..|+.
T Consensus 115 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~i~~~~~~~~~~Kp~~~~~~~~~~~lgi~ 184 (259)
T 4eek_A 115 AAETLRALRAAGVPFAIGSNSERGRLHLKLRVAGLTELAGEHIYDPSWVGGRGKPHPDLYTFAAQQLGIL 184 (259)
T ss_dssp HHHHHHHHHHHTCCEEEECSSCHHHHHHHHHHTTCHHHHCSCEECGGGGTTCCTTSSHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHhcChHhhccceEEeHhhcCcCCCCChHHHHHHHHHcCCC
Confidence 445666677779999999888888888888877754 4 5554443302222223556667777763
No 175
>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19
Probab=57.09 E-value=23 Score=25.13 Aligned_cols=37 Identities=14% Similarity=0.033 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChH---------------HHHHHHHHHcCc
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPI---------------SIFQKLKRELNF 54 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~---------------~~l~~l~~~~~~ 54 (184)
....++=+.|++.|.++.|+.+++. ..+..+++..++
T Consensus 59 ~g~~e~L~~L~~~G~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 110 (218)
T 2o2x_A 59 PQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGV 110 (218)
T ss_dssp GGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHCCCEEEEEcCcCCCCcccccHHHHHHHHHHHHHHHHHcCC
Confidence 3344455566777999999999887 567777777764
No 176
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=56.72 E-value=16 Score=31.38 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeec
Q psy17626 21 ADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~ 62 (184)
.+.-+.|++.|+++.++.|++......++++.+++.++.+-.
T Consensus 463 ~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~~~~~ 504 (645)
T 3j08_A 463 KPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVL 504 (645)
T ss_dssp HHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECSCC
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEeCC
Confidence 344566778899999999999999999999999999887653
No 177
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=56.40 E-value=51 Score=23.48 Aligned_cols=70 Identities=6% Similarity=0.084 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCeEEEE-EC-ChHHHHHHHHHHc--CcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 18 ECLADLDRQLKSHGGQLFIV-QG-SPISIFQKLKREL--NFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~-~g-~~~~~l~~l~~~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.++.-++..+++.|.++.|- .| --..++..++.+. ++..|+.+..+.+. ...+.+++.+++.||+++.+.
T Consensus 31 ~~~~~l~~~~~~~~~~v~Va~SGGkDS~vLL~ll~~~~~~v~~v~vd~g~~~~--e~~~~v~~~~~~~gi~~~v~~ 104 (215)
T 1sur_A 31 DAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFP--ETYRFIDELTDKLKLNLKVYR 104 (215)
T ss_dssp CHHHHHHHHHHHCCSEEEEECCCCTTHHHHHHHHHHHSTTCEEEEEECSCBCH--HHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCeEEEeeCCCCCH--HHHHHHHHHHHHhCCcEEEEe
Confidence 34556667777777666554 44 3445677777664 56677777766532 334577788888999988654
No 178
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=56.32 E-value=22 Score=24.53 Aligned_cols=45 Identities=11% Similarity=-0.034 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEe
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 60 (184)
-+..|.++.+++++.|..++.+..+..+.+.+++++++++-.+..
T Consensus 70 el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~ 114 (179)
T 3ixr_A 70 EGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVS 114 (179)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEE
Confidence 356788899999988999888888888899999999887644443
No 179
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=56.29 E-value=16 Score=27.59 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
..++-+.|++.|++++++.|+....+..++++.++.
T Consensus 146 ~~e~i~~l~~~gi~v~ivSgg~~~~i~~i~~~~g~~ 181 (297)
T 4fe3_A 146 YENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVY 181 (297)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCeEEEEeCCcHHHHHHHHHHcCCC
Confidence 345556667777777777777777777777776654
No 180
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=56.11 E-value=23 Score=24.48 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
...|.++.+++.+.|..++.+..|..+.+.+++++++++
T Consensus 71 l~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~ 109 (179)
T 3ixr_A 71 GLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFT 109 (179)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCc
Confidence 346777788888888888888888888889999888765
No 181
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=56.09 E-value=47 Score=22.97 Aligned_cols=76 Identities=11% Similarity=0.013 Sum_probs=52.8
Q ss_pred HHHHHHhcCCeEEEEECChHHHHHHHHHHc--CcceEEEeec-ccchhHHHHHHHHHHHHhCCCeEEEecCceeeccccc
Q psy17626 23 LDRQLKSHGGQLFIVQGSPISIFQKLKREL--NFTKLCFEQD-CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99 (184)
Q Consensus 23 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~v~~~~~-~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i 99 (184)
|++.-.++|..+.+++.+.+..|-+.+.+. +.+.|+.|.. |+.+... ++.++...++++.+++-..++..+.+
T Consensus 35 l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvA----lrDAl~~v~~P~VEVHiSNi~aRE~F 110 (154)
T 1uqr_A 35 LQQSAQAQGYELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSVA----IRDALLAVSIPFIEVHLSNVHAREPF 110 (154)
T ss_dssp HHHHHHHTTCEEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCHH----HHHHHHHHTCCEEEEESSCGGGSCGG
T ss_pred HHHHHHHCCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccchHH----HHHHHHhCCCCEEEEEecCccccccc
Confidence 333445669999999999987777766654 5778888853 3334333 34444455799999998888888877
Q ss_pred ccc
Q psy17626 100 IQT 102 (184)
Q Consensus 100 ~~~ 102 (184)
+..
T Consensus 111 Rh~ 113 (154)
T 1uqr_A 111 RHH 113 (154)
T ss_dssp GSC
T ss_pred ccc
Confidence 653
No 182
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=55.97 E-value=39 Score=22.01 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=25.1
Q ss_pred eEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 151 QLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 151 ~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
...+..|++.+.|.+.+++.+++-|+...
T Consensus 89 ~~~~~~g~~~~~I~~~a~~~~~dliV~G~ 117 (150)
T 3tnj_A 89 HRWLVWGEPREEIIRIAEQENVDLIVVGS 117 (150)
T ss_dssp GEEEEESCHHHHHHHHHHHTTCSEEEEEE
T ss_pred eEEEecCCHHHHHHHHHHHcCCCEEEEec
Confidence 46778899999999999999999998753
No 183
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=55.67 E-value=12 Score=32.58 Aligned_cols=41 Identities=22% Similarity=0.219 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeec
Q psy17626 22 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~ 62 (184)
+.-+.|++.|+++.++.|+.......++++.+++.++.+-.
T Consensus 542 ~~i~~l~~~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~~~~~ 582 (723)
T 3j09_A 542 PAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVL 582 (723)
T ss_dssp HHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECSCC
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCcEEEccCC
Confidence 44456778899999999999999999999999999887653
No 184
>1z9b_A Translation initiation factor IF-2; protein synthesis translation intiation IF2 FMet-tRNA structure; NMR {Geobacillus stearothermophilus}
Probab=55.66 E-value=41 Score=22.74 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcC---CeEEEEE---CChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 17 LECLADLDRQLKSHG---GQLFIVQ---GSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g---~~L~v~~---g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.-||..|...|.+++ ..+-|++ |...+-=-.++...++.-+-||-...+. +++..++.||++..+.
T Consensus 51 ~GSlEAl~~~L~~l~~~ev~i~Ii~~gVG~ItesDV~lA~as~aiIigFNV~~~~~-------a~~~A~~~gV~I~~~~ 122 (135)
T 1z9b_A 51 QGSVEALVAALQKIDVEGVRVKIIHAAVGAITESDISLATASNAIVIGFNVRPDAN-------AKRAAESEKVDIRLHR 122 (135)
T ss_dssp HHHHHHHHHHHTTCCCSSCEEEEEEEEESCBCHHHHHHHHHHTCEEEESSCCBCTT-------HHHHHHTTTCCCEECT
T ss_pred cchHHHHHHHHHhcCCCceEEEEEeecCCCCCHHHHHHHHHcCCEEEEeeCCCCHH-------HHHHHHHcCCeEEEeC
Confidence 458899999999876 4676665 5554433345555566666666554443 3344467788877653
No 185
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=55.64 E-value=35 Score=22.25 Aligned_cols=47 Identities=9% Similarity=0.082 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 42 ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 42 ~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
.+.+.+++++++++.|+..-... ...+-+.+...|.+.|+++....+
T Consensus 54 ~~~l~~~~~~~~id~viia~~~~--~~~~~~~i~~~l~~~gv~v~~vP~ 100 (141)
T 3nkl_A 54 PKYLERLIKKHCISTVLLAVPSA--SQVQKKVIIESLAKLHVEVLTIPN 100 (141)
T ss_dssp GGGHHHHHHHHTCCEEEECCTTS--CHHHHHHHHHHHHTTTCEEEECCC
T ss_pred HHHHHHHHHHCCCCEEEEeCCCC--CHHHHHHHHHHHHHcCCeEEECCC
Confidence 35688999999999998865322 223344677778889999887654
No 186
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=55.33 E-value=28 Score=22.01 Aligned_cols=59 Identities=8% Similarity=-0.015 Sum_probs=34.6
Q ss_pred CeEEEEEC----ChHHHHHHHHHHcCcceEEEeec-----ccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 32 GQLFIVQG----SPISIFQKLKRELNFTKLCFEQD-----CEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 32 ~~L~v~~g----~~~~~l~~l~~~~~~~~v~~~~~-----~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
.+|.++.. ...+.|.+++++++++.|+.--. ......++-+...+.|++.++++..++-
T Consensus 26 ~pl~ti~~~~~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~DE 93 (98)
T 1iv0_A 26 SGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELWDE 93 (98)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEECC
T ss_pred eeeEEEEccCcHHHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 45666632 23467999999999999988622 1212222223344444433888887654
No 187
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6
Probab=54.20 E-value=52 Score=22.86 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=8.3
Q ss_pred CCeEEEEECChHHHHHHHHHH
Q psy17626 31 GGQLFIVQGSPISIFQKLKRE 51 (184)
Q Consensus 31 g~~L~v~~g~~~~~l~~l~~~ 51 (184)
|.++.|..+.+...+...++.
T Consensus 99 ~~~l~i~T~~~~~~~~~~l~~ 119 (210)
T 2ah5_A 99 SYPLYITTTKDTSTAQDMAKN 119 (210)
T ss_dssp TSCEEEEEEEEHHHHHHHHHH
T ss_pred CCeEEEEeCCCHHHHHHHHHh
Confidence 444444443333333333333
No 188
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=54.07 E-value=19 Score=27.93 Aligned_cols=44 Identities=9% Similarity=-0.004 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecc
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~ 63 (184)
.+..+++-|+.+|++.++.-|++.+++..|++.-.+..| .+.|.
T Consensus 131 ~~~~~~~lL~~~gi~~i~apgEAD~~ia~La~~g~~~~I-~S~D~ 174 (326)
T 1a76_A 131 MVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAV-VSQDY 174 (326)
T ss_dssp HHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEE-ECSSS
T ss_pred HHHHHHHHHHHcCCCeEECCccHHHHHHHHHHCCCEEEE-ecCCc
Confidence 456677778889999999999999999999987444445 44443
No 189
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=53.89 E-value=23 Score=28.20 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
...++-+.|++.|.++.++.|........+++.+|++.+|.|.
T Consensus 260 g~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~~~~lgl~~~~~~~ 302 (415)
T 3p96_A 260 GARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAANE 302 (415)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCSEEEEEC
T ss_pred cHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCccceeeee
Confidence 3455667888899999999999999999999999999988763
No 190
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=53.89 E-value=41 Score=21.60 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=25.2
Q ss_pred eEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 151 QLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 151 ~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
...+..|++.+.+.+++++.+++-|+...
T Consensus 79 ~~~~~~g~~~~~I~~~a~~~~~dliV~G~ 107 (137)
T 2z08_A 79 DALLLEGVPAEAILQAARAEKADLIVMGT 107 (137)
T ss_dssp GEEEEESSHHHHHHHHHHHTTCSEEEEES
T ss_pred EEEEEecCHHHHHHHHHHHcCCCEEEECC
Confidence 56677899999999999999999998754
No 191
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=53.74 E-value=30 Score=23.33 Aligned_cols=37 Identities=11% Similarity=0.131 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCCe-EEEEeCChhHHHHHHHHHcCc
Q psy17626 136 ECLADLDRQLKSHGGQ-LFIVQGSPISIFQKLKRELNF 172 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~ 172 (184)
..|.++.+++++.|.. ++.+.-+..+.+.++++++++
T Consensus 57 ~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~ 94 (162)
T 1tp9_A 57 PGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPE 94 (162)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCC
Confidence 4577778888888998 888887777888899999988
No 192
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}
Probab=53.68 E-value=53 Score=23.22 Aligned_cols=65 Identities=15% Similarity=-0.010 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc----eEEEeecccchhHHHHHHHHHHHHhCCCe
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT----KLCFEQDCEALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~----~v~~~~~~~~~~~~rd~~v~~~l~~~gi~ 84 (184)
.+.++-+.|++.|.++.|+.+.+...+....+..++. .++...+... .+---..+...+++.|+.
T Consensus 98 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~-~Kp~~~~~~~~~~~~g~~ 166 (241)
T 2hoq_A 98 GARKVLIRLKELGYELGIITDGNPVKQWEKILRLELDDFFEHVIISDFEGV-KKPHPKIFKKALKAFNVK 166 (241)
T ss_dssp THHHHHHHHHHHTCEEEEEECSCHHHHHHHHHHTTCGGGCSEEEEGGGGTC-CTTCHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHCCCEEEEEECCCchhHHHHHHHcCcHhhccEEEEeCCCCC-CCCCHHHHHHHHHHcCCC
Confidence 4455666777889999999888777777777777754 4555444321 111123455566666653
No 193
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=53.61 E-value=21 Score=23.29 Aligned_cols=22 Identities=14% Similarity=0.366 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEE
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQ 38 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~ 38 (184)
...|..+.+.+++.|+.|.+..
T Consensus 67 l~~L~~~~~~~~~~g~~l~l~~ 88 (130)
T 4dgh_A 67 IQTLEEMIQSFHKRGIKVLISG 88 (130)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEc
Confidence 3566777777777787777663
No 194
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=53.44 E-value=19 Score=27.16 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC----eEEEcc
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT----KLCFEQ 179 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~----~v~~n~ 179 (184)
...++-+.|.+.|+++.++.|+-...+..++++.|+. .++.|.
T Consensus 145 g~~e~i~~l~~~gi~v~ivSgg~~~~i~~i~~~~g~~~~~~~i~~n~ 191 (297)
T 4fe3_A 145 GYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHSNVKVVSNF 191 (297)
T ss_dssp THHHHHHHHHHTTCCEEEEEEEEHHHHHHHHHHTTCCCTTEEEEEEC
T ss_pred cHHHHHHHHHHcCCeEEEEeCCcHHHHHHHHHHcCCCcccceEEeee
Confidence 3456677888899999999999999999999999876 366664
No 195
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=53.39 E-value=63 Score=23.56 Aligned_cols=51 Identities=8% Similarity=0.029 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCeEEEEeC-------------ChhHHHHHHHHHcCcCeEEEcccc
Q psy17626 131 FRFLLECLADLDRQLKSHGGQLFIVQG-------------SPISIFQKLKRELNFTKLCFEQDC 181 (184)
Q Consensus 131 ~~fl~~~L~~L~~~L~~~g~~L~v~~g-------------~~~~~l~~l~~~~~~~~v~~n~~~ 181 (184)
+..+.++|..+....++.|+.|.+-.- ...+.+.+++++.+-..|-..-|.
T Consensus 117 ~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~vg~~~D~ 180 (281)
T 3u0h_A 117 ISQLARRIRQVAVELLPLGMRVGLEYVGPHHLRHRRYPFVQSLADLKTFWEAIGAPNVGALVDS 180 (281)
T ss_dssp HHHHHHHHHHHHHHHGGGTCEEEEECCCCGGGCCSSEECCCSHHHHHHHHHHHCCTTEEEEEEH
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeccccccccccccccCCHHHHHHHHHHcCCCCeeEEeeh
Confidence 345678888888888899999887532 234566788888877777666554
No 196
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=53.29 E-value=51 Score=22.51 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=53.2
Q ss_pred HHHHHHhcCCeEEEEECChHHHHHHHHHHc--CcceEEEeec-ccchhHHHHHHHHHHHHhCCCeEEEecCceeeccccc
Q psy17626 23 LDRQLKSHGGQLFIVQGSPISIFQKLKREL--NFTKLCFEQD-CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99 (184)
Q Consensus 23 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~v~~~~~-~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i 99 (184)
|++.-.++|..+.+++.+.+..|-+...+. +.+.|+.|.. |+.+.. .++.++..-++++.+++-..++..+.+
T Consensus 34 l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE~F 109 (143)
T 1gqo_A 34 LFQFAEALHIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSY----AIRDAVSSISLPVVEVHLSNLYAREEF 109 (143)
T ss_dssp HHHHHHHHTCEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCH----HHHHHHHTSCSCEEEEESSCGGGSCGG
T ss_pred HHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccH----HHHHHHHhCCCCEEEEEecCccccccc
Confidence 333344569999999998887766666553 5778999853 344443 344555667899999998888888877
Q ss_pred ccc
Q psy17626 100 IQT 102 (184)
Q Consensus 100 ~~~ 102 (184)
+..
T Consensus 110 Rh~ 112 (143)
T 1gqo_A 110 RHQ 112 (143)
T ss_dssp GGC
T ss_pred ccc
Confidence 553
No 197
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=53.14 E-value=66 Score=23.73 Aligned_cols=142 Identities=13% Similarity=0.139 Sum_probs=78.5
Q ss_pred ChHHHHHHHHHHcCcceEEEeeccc-chhHHHHHHHHHHHHhCCCeEEEecCc----eeeccc----ccccccCC---CC
Q psy17626 40 SPISIFQKLKRELNFTKLCFEQDCE-ALWHKRDKKVKKWCAENNITVKEFVSH----TLWDPE----VVIQTNGN---VP 107 (184)
Q Consensus 40 ~~~~~l~~l~~~~~~~~v~~~~~~~-~~~~~rd~~v~~~l~~~gi~~~~~~~~----~L~~p~----~i~~~~~~---~~ 107 (184)
.+.+...+.+++.|++.|=..-... +.....-+.+++.+++.|+++.....+ .+.++. .+...+.. ..
T Consensus 21 ~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~ 100 (290)
T 3tva_A 21 AGLGVHLEVAQDLKVPTVQVHAPHPHTRTREHAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASR 100 (290)
T ss_dssp SSSSBCHHHHHHTTCSEEEEECCCGGGCSHHHHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCCcCCHHHHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHH
Confidence 3444455667778888875553221 122334467888899999998776432 111110 00000000 01
Q ss_pred chhHHHHHHHhhhcccccc----C------cchhHHHHHHHHHHHHHHHhCCCeEEEEe-CChhHHHHHHHHHcCcCeEE
Q psy17626 108 PLTYKMYLHTVSCIGTMHI----G------YNRFRFLLECLADLDRQLKSHGGQLFIVQ-GSPISIFQKLKRELNFTKLC 176 (184)
Q Consensus 108 ~~v~~~F~~~~~~~~~~~~----~------~~r~~fl~~~L~~L~~~L~~~g~~L~v~~-g~~~~~l~~l~~~~~~~~v~ 176 (184)
-..+.........++.+.. + ...+..+.++|..+....++.|+.+.+-. ....+.+.+++++.+-..|-
T Consensus 101 ~~~~~~~i~~a~~lG~~~v~~~~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~l~~~~~~~~~g 180 (290)
T 3tva_A 101 VAEMKEISDFASWVGCPAIGLHIGFVPESSSPDYSELVRVTQDLLTHAANHGQAVHLETGQESADHLLEFIEDVNRPNLG 180 (290)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCCCCCCTTSHHHHHHHHHHHHHHHHHHTTTCEEEEECCSSCHHHHHHHHHHHCCTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCcccchHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHhcCCCCEE
Confidence 1223333333344433211 1 12345677888889888889999888754 33456677888888766666
Q ss_pred Ecccc
Q psy17626 177 FEQDC 181 (184)
Q Consensus 177 ~n~~~ 181 (184)
..-|.
T Consensus 181 ~~~D~ 185 (290)
T 3tva_A 181 INFDP 185 (290)
T ss_dssp EEECH
T ss_pred EEecc
Confidence 55553
No 198
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=52.92 E-value=56 Score=22.89 Aligned_cols=71 Identities=8% Similarity=0.045 Sum_probs=50.6
Q ss_pred HhcCCeEEEEECChHHHHHHHHHH---cCcceEEEeec-ccchhHHHHHHHHHHHHhCCCeEEEecCceeecccccccc
Q psy17626 28 KSHGGQLFIVQGSPISIFQKLKRE---LNFTKLCFEQD-CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQT 102 (184)
Q Consensus 28 ~~~g~~L~v~~g~~~~~l~~l~~~---~~~~~v~~~~~-~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~ 102 (184)
.++|..+.+++.|.+..|-+.+.+ -+++.|+.|.. |+.+.. .++.++...++++.+++-..++..+.++..
T Consensus 55 ~~~g~~v~~~QSN~EGeLId~Ih~A~~~~~dgIIINpgAyTHtSv----AlrDAL~~v~~P~VEVHiSNihaRE~FRh~ 129 (167)
T 3kip_A 55 KNNDSEVLVFQSNTEGFIIDRIHEAKRQGVGFVVINAGAYTHTSV----GIRDALLGTAIPFIEVHITNVHQREPFRHQ 129 (167)
T ss_dssp TCSSCEEEEEECSCHHHHHHHHHHHHHTTCCEEEEECGGGGGTCH----HHHHHHHHTTCCEEEEESSCGGGSCGGGGC
T ss_pred ccCCcEEEEEecCCHHHHHHHHHHhhhcCccEEEEccccceeccH----HHHHHHHhcCCCEEEEEcCCccccccchhc
Confidence 456899999998888776666554 35888999954 344444 334445566899999998888888877653
No 199
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=52.91 E-value=65 Score=23.63 Aligned_cols=154 Identities=10% Similarity=0.029 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.|..+-+..+.+.++++|..+.+... ++.. .+..+ ...+++.|+....... . . .+.+.+.+.|+++..+
T Consensus 33 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgii~~~~~~~-~---~-~~~~~~~~~~iPvV~~ 106 (293)
T 2iks_A 33 TSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHL-LQRQVDAIIVSTSLPP-E---H-PFYQRWANDPFPIVAL 106 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHH-HHTTCSEEEECCSSCT-T---C-HHHHTTTTSSSCEEEE
T ss_pred cHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHH-HHcCCCEEEEeCCCCC-c---H-HHHHHHHhCCCCEEEE
Confidence 47778888899999999999988754 3332 23333 3468898887542211 1 1 1223345679998887
Q ss_pred cCceeecc--cccccccCCCCchhHHHHHHHhhh---cccccc----CcchhHHHHHHHHHHHHHHHhCCCeEE-EEeCC
Q psy17626 89 VSHTLWDP--EVVIQTNGNVPPLTYKMYLHTVSC---IGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLF-IVQGS 158 (184)
Q Consensus 89 ~~~~L~~p--~~i~~~~~~~~~~v~~~F~~~~~~---~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~-v~~g~ 158 (184)
+...- ++ ..+.. ..+..-....+. .+-.+. +........+.+.-..+.|++.|.... +..++
T Consensus 107 ~~~~~-~~~~~~V~~-------d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~ 178 (293)
T 2iks_A 107 DRALD-REHFTSVVG-------ADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANS 178 (293)
T ss_dssp ESCCC-TTTCEEEEE-------CHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCEEEEEESS
T ss_pred CCccC-cCCCCEEEe-------cCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHHHHHHcCCCccEEEcCC
Confidence 64311 11 11111 111111111111 121111 122223445667778888988887433 33433
Q ss_pred --hh---HHHHHHHHHc-CcCeEEEcccc
Q psy17626 159 --PI---SIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 159 --~~---~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
.. +.+.++.++. .+++||+..|.
T Consensus 179 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 207 (293)
T 2iks_A 179 YEREAAAQLFEKWLETHPMPQALFTTSFA 207 (293)
T ss_dssp SCHHHHHHHHHHHTTTSCCCSEEEESSHH
T ss_pred CChhhHHHHHHHHHhcCCCCCEEEECChH
Confidence 22 3455666554 68999987653
No 200
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=52.90 E-value=30 Score=23.67 Aligned_cols=38 Identities=3% Similarity=-0.008 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHHHHcCcC
Q psy17626 136 ECLADLDRQLKSHGG-QLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
..|.++.+++++.|. .++.+.-+..+.+.+++++++++
T Consensus 53 p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~ 91 (167)
T 2wfc_A 53 PGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGAD 91 (167)
T ss_dssp HHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCC
Confidence 346667777888899 88888877777888999999886
No 201
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}
Probab=52.86 E-value=54 Score=22.70 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCeEEEEECCh---HHHHHHHHHHcCc----ceEEEeecccchhHHHHHHHHHHHHhCCCe
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSP---ISIFQKLKRELNF----TKLCFEQDCEALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~---~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~ 84 (184)
.+.++-+.|++.|.++.+..+.. ...+....+..++ +.++...+.... +.--..+...+++.|+.
T Consensus 103 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~-kp~~~~~~~~~~~lgi~ 174 (235)
T 2om6_A 103 GTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLMEFIDKTFFADEVLSY-KPRKEMFEKVLNSFEVK 174 (235)
T ss_dssp THHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCGGGCSEEEEHHHHTCC-TTCHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHCCCEEEEEcCCcccchhHHHHHHHhCCcHHHhhhheeccccCCC-CCCHHHHHHHHHHcCCC
Confidence 34455566777788888888777 6666666666654 345544333211 11123455666666763
No 202
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=52.84 E-value=30 Score=24.05 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
+.++-+.|++.|.++.+..+.+........+..++.
T Consensus 89 ~~~~l~~L~~~g~~~~i~tn~~~~~~~~~l~~~~l~ 124 (216)
T 3kbb_A 89 VREALEFVKSKRIKLALATSTPQREALERLRRLDLE 124 (216)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHcCCCcccccCCcHHHHHHHHHhcCCC
Confidence 345556677778888777777766666666666543
No 203
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*
Probab=52.66 E-value=27 Score=25.38 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEe
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 60 (184)
...++-+.|++.|+++.|..|++......+++..++...+..
T Consensus 148 ~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~f~~ 189 (280)
T 3skx_A 148 ESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDDYFAE 189 (280)
T ss_dssp THHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECS
T ss_pred hHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCChhHhHh
Confidence 345556677788999999999999999999999999876643
No 204
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=52.65 E-value=65 Score=23.54 Aligned_cols=159 Identities=9% Similarity=0.032 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.|..+-+..+.+.+++.|..+.+... ++.. .+..+. ..+++.|..... ... .....++ .+.+.|+++..+
T Consensus 14 ~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~-~~~--~~~~~~~-~~~~~~iPvV~~ 88 (283)
T 2ioy_A 14 PFFVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLI-QQKVDVLLINPV-DSD--AVVTAIK-EANSKNIPVITI 88 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS-STT--TTHHHHH-HHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHH-HcCCCEEEEeCC-chh--hhHHHHH-HHHHCCCeEEEe
Confidence 47777888888899999999888753 3432 344444 568998887532 111 1112233 345679999887
Q ss_pred cCceeec--ccccccccCCCCchhHHHHHHHhhhcc-ccc----cCcchhHHHHHHHHHHHHHHHhC-CCeEEE-EeCC-
Q psy17626 89 VSHTLWD--PEVVIQTNGNVPPLTYKMYLHTVSCIG-TMH----IGYNRFRFLLECLADLDRQLKSH-GGQLFI-VQGS- 158 (184)
Q Consensus 89 ~~~~L~~--p~~i~~~~~~~~~~v~~~F~~~~~~~~-~~~----~~~~r~~fl~~~L~~L~~~L~~~-g~~L~v-~~g~- 158 (184)
+...--. ...+..++ .-..+..-......++ ..+ .++.......+.+.-..+.|++. |+++.. ..++
T Consensus 89 ~~~~~~~~~~~~V~~D~---~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~ 165 (283)
T 2ioy_A 89 DRSANGGDVVCHIASDN---VKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVAKQAADF 165 (283)
T ss_dssp SSCCSSSCCSEEEEECH---HHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTT
T ss_pred cCCCCCcceeEEEecCh---HHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEeeccCCC
Confidence 6431000 01121111 0001111111111112 111 12222233456677788888887 776532 3332
Q ss_pred -h---hHHHHHHHHHc-CcCeEEEccc
Q psy17626 159 -P---ISIFQKLKREL-NFTKLCFEQD 180 (184)
Q Consensus 159 -~---~~~l~~l~~~~-~~~~v~~n~~ 180 (184)
. .+.+.++.+.. .+++||+..|
T Consensus 166 ~~~~~~~~~~~ll~~~~~~~ai~~~nD 192 (283)
T 2ioy_A 166 DRSKGLSVMENILQAQPKIDAVFAQND 192 (283)
T ss_dssp CHHHHHHHHHHHHHHCSCCCEEEESSH
T ss_pred CHHHHHHHHHHHHHhCCCccEEEECCc
Confidence 2 23556666655 6899998765
No 205
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=52.62 E-value=64 Score=23.44 Aligned_cols=72 Identities=11% Similarity=0.048 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECC--hHH--HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQGS--PIS--IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g~--~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
..|..+-+..+.+.++++|..+.+...+ +.. .+.+.+...+++.|++..... + ...+.+.+.|+++..+
T Consensus 19 ~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~-~~~~~l~~~~iPvV~i 91 (276)
T 3jy6_A 19 DYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN------P-QTVQEILHQQMPVVSV 91 (276)
T ss_dssp SHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC------H-HHHHHHHTTSSCEEEE
T ss_pred chHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc------H-HHHHHHHHCCCCEEEE
Confidence 3477888888999999999999888643 322 233344456899888864322 2 3334556789999887
Q ss_pred cCc
Q psy17626 89 VSH 91 (184)
Q Consensus 89 ~~~ 91 (184)
+..
T Consensus 92 ~~~ 94 (276)
T 3jy6_A 92 DRE 94 (276)
T ss_dssp SCC
T ss_pred ecc
Confidence 643
No 206
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=52.25 E-value=38 Score=20.73 Aligned_cols=63 Identities=13% Similarity=0.233 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEE-CChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQ-GSPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~-g~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+-+++.-++.+.-|-||.|+. |-... .+..-+++.+++-=+. +..+|.+. -++++++++..|-
T Consensus 38 qdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvl-kstdpeel--tqrvreflktags 104 (112)
T 2lnd_A 38 QDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVL-KSTDPEEL--TQRVREFLKTAGS 104 (112)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEE-ECCCHHHH--HHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhh-ccCCHHHH--HHHHHHHHHhccc
Confidence 557788888888899998875 43333 3444445555542222 23344433 3467888876663
No 207
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=52.22 E-value=24 Score=30.30 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
...+.-+.|++.|+.+.++.||.......++++.|++.+|.+.
T Consensus 461 ~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~~~~ 503 (645)
T 3j08_A 461 SAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEV 503 (645)
T ss_dssp THHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEeC
Confidence 3344455677789999999999999999999999999998764
No 208
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=52.13 E-value=54 Score=22.46 Aligned_cols=76 Identities=11% Similarity=0.086 Sum_probs=52.9
Q ss_pred HHHHHHhcCCeEEEEECChHHHHHHHHHHc--CcceEEEeec-ccchhHHHHHHHHHHHHhCCCeEEEecCceeeccccc
Q psy17626 23 LDRQLKSHGGQLFIVQGSPISIFQKLKREL--NFTKLCFEQD-CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99 (184)
Q Consensus 23 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~v~~~~~-~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i 99 (184)
|++.-.++|..+.+++.+.+..|-+...+. +.+.|+.|.. |+.+.. .++.++...++++.+++-..++..+.+
T Consensus 36 l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE~F 111 (146)
T 1h05_A 36 IEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSV----ALRDACAELSAPLIEVHISNVHAREEF 111 (146)
T ss_dssp HHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCH----HHHHHHHTCCSCEEEEESSCGGGSCGG
T ss_pred HHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccH----HHHHHHHhCCCCEEEEEecCccccccc
Confidence 333445669999999988877666655443 4778888853 344443 345556677899999998888888877
Q ss_pred ccc
Q psy17626 100 IQT 102 (184)
Q Consensus 100 ~~~ 102 (184)
+..
T Consensus 112 Rh~ 114 (146)
T 1h05_A 112 RRH 114 (146)
T ss_dssp GGC
T ss_pred ccc
Confidence 653
No 209
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*
Probab=51.84 E-value=32 Score=25.02 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 138 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 138 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
..++-+.|++.|+++.++.|++......+++..++...|..
T Consensus 149 ~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~f~~ 189 (280)
T 3skx_A 149 SREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDDYFAE 189 (280)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECS
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCChhHhHh
Confidence 34444566777999999999999989999999999887754
No 210
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=51.62 E-value=66 Score=23.32 Aligned_cols=65 Identities=11% Similarity=0.003 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEC---Ch---HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQG---SP---ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g---~~---~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
-+.+.++++.+++.|+.+..... .. .+...+++++.++..|..+.. .+.-+.+.+.+++.||.+.
T Consensus 60 ~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~p~-----~~~l~~l~~~a~~~gv~l~ 130 (257)
T 3lmz_A 60 DEQIRAFHDKCAAHKVTGYAVGPIYMKSEEEIDRAFDYAKRVGVKLIVGVPN-----YELLPYVDKKVKEYDFHYA 130 (257)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEEECSHHHHHHHHHHHHHHTCSEEEEEEC-----GGGHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHcCCeEEEEeccccCCHHHHHHHHHHHHHhCCCEEEecCC-----HHHHHHHHHHHHHcCCEEE
Confidence 35678899999999998776543 22 334556778899999998642 2233456667777898754
No 211
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=51.41 E-value=66 Score=23.21 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeC----------ChhHHHHHHHHHcCcCeEEEcccc
Q psy17626 132 RFLLECLADLDRQLKSHGGQLFIVQG----------SPISIFQKLKRELNFTKLCFEQDC 181 (184)
Q Consensus 132 ~fl~~~L~~L~~~L~~~g~~L~v~~g----------~~~~~l~~l~~~~~~~~v~~n~~~ 181 (184)
..+.++|..+.+..++.|+.+.+-.- ...+.+.+++++.+...+-.+-|.
T Consensus 120 ~~~~~~l~~l~~~a~~~gv~l~~E~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~D~ 179 (260)
T 1k77_A 120 AVFIDNIRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQALAIVEEVARDNVFIQLDT 179 (260)
T ss_dssp HHHHHHHHHHHHHHGGGTCEEEECCCCTTTSTTBSCCSHHHHHHHHHHHCCTTEEEEEEH
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCccCCCcCccCCHHHHHHHHHHhCCCCEEEEeeH
Confidence 45677888888888888998877432 234567788888877666665554
No 212
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=50.66 E-value=23 Score=27.56 Aligned_cols=42 Identities=5% Similarity=-0.073 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEE
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 177 (184)
..+..+.+-|+.+|++.++..|++.+++..|+++-.+..|++
T Consensus 130 ~~~~~~~~lL~~~gi~~i~apgEAD~~ia~La~~g~~~~I~S 171 (326)
T 1a76_A 130 KMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVS 171 (326)
T ss_dssp HHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEEC
T ss_pred HHHHHHHHHHHHcCCCeEECCccHHHHHHHHHHCCCEEEEec
Confidence 356677778888899999999999999999988744555544
No 213
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=50.66 E-value=25 Score=24.36 Aligned_cols=41 Identities=12% Similarity=0.052 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 138 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 138 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
+.++-+.|++.|.++.++.+.+...+..+.+..++..+|.+
T Consensus 80 ~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~ 120 (217)
T 3m1y_A 80 ALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSN 120 (217)
T ss_dssp HHHHHHHHHTTTEEEEEEEEEEHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHcCcchhccc
Confidence 44455667788999999999888888889999999887654
No 214
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=50.45 E-value=72 Score=23.41 Aligned_cols=51 Identities=10% Similarity=0.086 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCeEEEEeC-----ChhHHHHHHHHHcCcCeEEEcccc
Q psy17626 131 FRFLLECLADLDRQLKSHGGQLFIVQG-----SPISIFQKLKRELNFTKLCFEQDC 181 (184)
Q Consensus 131 ~~fl~~~L~~L~~~L~~~g~~L~v~~g-----~~~~~l~~l~~~~~~~~v~~n~~~ 181 (184)
+..+.++|..+....++.|+.|.+-.- ...+.+.+++++.+-..|-..-|.
T Consensus 118 ~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~l~~~~~~~~vg~~~D~ 173 (286)
T 3dx5_A 118 RQEYVNRIRMICELFAQHNMYVLLETHPNTLTDTLPSTLELLGEVDHPNLKINLDF 173 (286)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECCTTSTTSSHHHHHHHHHHHCCTTEEEEEEH
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEecCCCcCcCCHHHHHHHHHhcCCCCeEEEecc
Confidence 356678888888888888998877541 234557778888776666555543
No 215
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=50.24 E-value=31 Score=25.79 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEe
Q psy17626 21 ADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 60 (184)
.++=+.|++.|+++.|..|++...+..+++..+++.+|..
T Consensus 169 ~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~ 208 (287)
T 3a1c_A 169 KPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAE 208 (287)
T ss_dssp HHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECS
T ss_pred HHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCceeeee
Confidence 3555667788999999999988888888888888877654
No 216
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=50.01 E-value=23 Score=27.80 Aligned_cols=43 Identities=7% Similarity=-0.084 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEE
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 177 (184)
.+.+..+.+-|+.+|++.++..|++.+++..|++.-.+..|.+
T Consensus 134 ~~q~~~~~~lL~~~gip~i~ap~EADd~ia~La~~g~v~~i~s 176 (341)
T 3q8k_A 134 KQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAAT 176 (341)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEECCccHHHHHHHHHhcCCeEEEEc
Confidence 5567788888999999999999999999999988755554443
No 217
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=49.96 E-value=32 Score=25.67 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 140 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 140 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
++=+.|++.|+++.++.+++...+..+++..|+..+|..
T Consensus 170 ~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~ 208 (287)
T 3a1c_A 170 PAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAE 208 (287)
T ss_dssp HHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECS
T ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCceeeee
Confidence 344456778999999999999888889999999888754
No 218
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=49.91 E-value=34 Score=23.03 Aligned_cols=38 Identities=11% Similarity=0.143 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCe-EEEEECChHHHHHHHHHHcCc
Q psy17626 17 LECLADLDRQLKSHGGQ-LFIVQGSPISIFQKLKRELNF 54 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~ 54 (184)
...|.++.+++++.|.. ++.+.-+..+.+.++++++++
T Consensus 56 ~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~ 94 (162)
T 1tp9_A 56 VPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPE 94 (162)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCC
Confidence 45678888888888999 888888878888999999887
No 219
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=49.86 E-value=80 Score=23.73 Aligned_cols=160 Identities=15% Similarity=0.020 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChH---HHHHHHHHHcC--cceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPI---SIFQKLKRELN--FTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~--~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
.|..+-+..+.+.+++.|..+.+... ++. +.+..+.+ .+ ++.|+..-. .. ......+ +.+.+.||++.
T Consensus 18 ~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~-~~~~vdgiIi~~~-~~--~~~~~~~-~~~~~~~iPvV 92 (332)
T 2rjo_A 18 PYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQ-KTGGNLVLNVDPN-DS--ADARVIV-EACSKAGAYVT 92 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHH-HTTTCEEEEECCS-SH--HHHHHHH-HHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHH-CCCCCCEEEEeCC-CH--HHHHHHH-HHHHHCCCeEE
Confidence 47778888899999999999988754 333 23444444 46 898887532 11 1111223 33445689998
Q ss_pred EecCceee-c------c--cccccccCCCCchhHHHHHHHhhh-ccccc----cCcchhHHHHHHHHHHHHHHHhC-CCe
Q psy17626 87 EFVSHTLW-D------P--EVVIQTNGNVPPLTYKMYLHTVSC-IGTMH----IGYNRFRFLLECLADLDRQLKSH-GGQ 151 (184)
Q Consensus 87 ~~~~~~L~-~------p--~~i~~~~~~~~~~v~~~F~~~~~~-~~~~~----~~~~r~~fl~~~L~~L~~~L~~~-g~~ 151 (184)
.++...-- . + ..+..++. ..-..-..+. ... .+-.+ .+........+.+.-+.+.|++. |++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~V~~D~~-~~g~~a~~~L--~~~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~ 169 (332)
T 2rjo_A 93 TIWNKPKDLHPWDYNPNYVAHLSYDGV-AYGEETATQL--FKSMGGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQ 169 (332)
T ss_dssp EESCCCTTCCGGGGTTTEEEEEECCHH-HHHHHHHHHH--HHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEE
T ss_pred EECCCCCcccchhcccceeEEEccChH-HHHHHHHHHH--HHHcCCCCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcE
Confidence 87653210 0 0 01111100 0000011111 111 11111 12222334556777788889988 877
Q ss_pred EEE-EeCC--h---hHHHHHHHHH-c-CcCeEEEcccc
Q psy17626 152 LFI-VQGS--P---ISIFQKLKRE-L-NFTKLCFEQDC 181 (184)
Q Consensus 152 L~v-~~g~--~---~~~l~~l~~~-~-~~~~v~~n~~~ 181 (184)
+.- ..++ . .+.+.++.+. . .+++||+..|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~aI~~~nd~ 207 (332)
T 2rjo_A 170 LLDFQVADWNSQKAFPIMQAWMTRFNSKIKGVWAANDD 207 (332)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHGGGEEEEEESSHH
T ss_pred EEeeccCCCCHHHHHHHHHHHHHhcCCCeeEEEECCCc
Confidence 542 3332 2 3456677665 3 78999987653
No 220
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=49.74 E-value=20 Score=28.57 Aligned_cols=40 Identities=8% Similarity=-0.076 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEE
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 59 (184)
+..+++-|+.+|++.++.-|++.+++..|++...+..|+.
T Consensus 137 ~~~~~~lL~~~Gi~~i~apgEADd~iA~La~~g~~~~iiS 176 (379)
T 1ul1_X 137 NDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAAT 176 (379)
T ss_dssp HHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEEC
T ss_pred HHHHHHHHHHcCCCeecCCCcHHHHHHHHHhcCCeEEEEe
Confidence 4677888888999999999999999999999866654444
No 221
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=49.18 E-value=54 Score=21.68 Aligned_cols=53 Identities=13% Similarity=0.062 Sum_probs=36.7
Q ss_pred CeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 32 GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 32 ~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
..+.|.-|+-.+++...++-.++..|.......|... +.+.+++.||++....
T Consensus 53 ~~l~I~~G~r~~~~l~a~~~~~~~~iIlt~g~~~~~~-----i~~~A~~~~ipvl~t~ 105 (139)
T 2ioj_A 53 NAALVTGGDRSDLLLTALEMPNVRCLILTGNLEPVQL-----VLTKAEERGVPVILTG 105 (139)
T ss_dssp SEEEEEETTCHHHHHHHTTCTTEEEEEEETTCCCCHH-----HHHHHHHHTCCEEECS
T ss_pred CEEEEEcCCHHHHHHHHHhCCCCcEEEEcCCCCCCHH-----HHHHHHHCCCeEEEEC
Confidence 3677777999888776655357889999988776543 3344556688877543
No 222
>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}
Probab=49.04 E-value=32 Score=23.59 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 54 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 54 (184)
..++-+.|++.|.++.|..+.+...+..+++..++
T Consensus 87 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~ 121 (219)
T 3kd3_A 87 IKELVQDLKNKGFEIWIFSGGLSESIQPFADYLNI 121 (219)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHcCC
Confidence 33444455555666666666555555555555554
No 223
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=49.01 E-value=23 Score=27.88 Aligned_cols=45 Identities=9% Similarity=-0.017 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeec
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~ 62 (184)
.+-+..+++-|+.+|++.++.-|++.+++..|++.-.+..|+ +.|
T Consensus 134 ~~q~~~~~~lL~~~gip~i~ap~EADd~ia~La~~g~v~~i~-s~D 178 (341)
T 3q8k_A 134 KQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAA-TED 178 (341)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEE-CSC
T ss_pred HHHHHHHHHHHHHcCCCEEECCccHHHHHHHHHhcCCeEEEE-cCC
Confidence 445677888899999999999999999999999975444343 444
No 224
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=48.91 E-value=72 Score=22.97 Aligned_cols=68 Identities=15% Similarity=0.258 Sum_probs=41.1
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEE-eecc----------cchhHHHHHHHHHHHHhCCCeEEEecCce
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF-EQDC----------EALWHKRDKKVKKWCAENNITVKEFVSHT 92 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~-~~~~----------~~~~~~rd~~v~~~l~~~gi~~~~~~~~~ 92 (184)
++|++.|+.+.+..|.+...+..+.++.+.+.+++ |-.+ .+.....-..+.+.+++.|+.+..+.+..
T Consensus 30 ~~l~~~G~~~~~aTGR~~~~~~~~~~~l~~~~~i~~nGa~i~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 108 (258)
T 2pq0_A 30 RRLKQSGVYVAIATGRAPFMFEHVRKQLGIDSFVSFNGQYVVFEGNVLYKQPLRREKVRALTEEAHKNGHPLVFMDAEK 108 (258)
T ss_dssp HHHHHTTCEEEEECSSCGGGSHHHHHHHTCCCEEEGGGTEEEETTEEEEECCCCHHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred HHHHHCCCEEEEECCCChHHHHHHHHhcCCCEEEECCCCEEEECCEEEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCc
Confidence 34566799999999998877777777776554322 1000 01112333455666777888876664443
No 225
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=48.87 E-value=16 Score=32.05 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=33.6
Q ss_pred HHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 140 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 140 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
+.-+.|++.|+.+.++.||.......++++.|++.++.+.
T Consensus 561 ~aI~~L~~~Gi~v~mlTGd~~~~a~~ia~~lgi~~v~a~~ 600 (736)
T 3rfu_A 561 ETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEI 600 (736)
T ss_dssp HHHHHHHHHTCEEEEECSSCHHHHHHHHHHHTCCCEECSC
T ss_pred HHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCEEEEec
Confidence 3344566679999999999999999999999999998764
No 226
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=48.73 E-value=36 Score=23.60 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCeEE-EEeCChhHHHHHHHHHcCcC
Q psy17626 137 CLADLDRQLKSHGGQLF-IVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~-v~~g~~~~~l~~l~~~~~~~ 173 (184)
.+.++.++++++|..++ ++..+......+++++++++
T Consensus 66 ~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~ 103 (173)
T 3mng_A 66 GFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAE 103 (173)
T ss_dssp HHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCC
Confidence 46667778888899988 48878888889999999875
No 227
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=48.59 E-value=39 Score=24.32 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=27.0
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcCcce
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 56 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 56 (184)
++|++.|+.+.+..|.+...+..+++..+++.
T Consensus 32 ~~l~~~g~~~~i~TGr~~~~~~~~~~~l~~~~ 63 (227)
T 1l6r_A 32 RSAEKKGLTVSLLSGNVIPVVYALKIFLGING 63 (227)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHHHHTCCS
T ss_pred HHHHHCCCEEEEECCCCcHHHHHHHHHhCCCC
Confidence 34566799999999999999999999888764
No 228
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=48.54 E-value=16 Score=26.58 Aligned_cols=67 Identities=10% Similarity=0.124 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcCCeEEEEE---CChHHHHHHHHHHcCcceEEEeeccc---chhHHHHHHHHHHHHhCCCeEEE
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQ---GSPISIFQKLKRELNFTKLCFEQDCE---ALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~---g~~~~~l~~l~~~~~~~~v~~~~~~~---~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
.+|.-..+..+++|++=+|+- |+....+.+.++ + .-|.....++ |.....++.+++.|++.|+++..
T Consensus 38 ~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~~--~-~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 110 (206)
T 1t57_A 38 RVLELVGERADQLGIRNFVVASVSGETALRLSEMVE--G-NIVSVTHHAGFREKGQLELEDEARDALLERGVNVYA 110 (206)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTCC--S-EEEEECCCTTSSSTTCCSSCHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHcc--C-CEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 456666677777888866664 444433333221 2 4444444443 55667778888899999987664
No 229
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}
Probab=48.35 E-value=50 Score=22.68 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHH
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE 51 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~ 51 (184)
.+.++-+.|++ |.++.++.+.+...+..+.+.
T Consensus 93 ~~~~~l~~l~~-g~~~~i~t~~~~~~~~~~~~~ 124 (211)
T 2i6x_A 93 EKFDYIDSLRP-DYRLFLLSNTNPYVLDLAMSP 124 (211)
T ss_dssp HHHHHHHHHTT-TSEEEEEECCCHHHHHHHTST
T ss_pred HHHHHHHHHHc-CCeEEEEeCCCHHHHHHHHhh
Confidence 34444445555 666666666665555555554
No 230
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=48.06 E-value=51 Score=23.19 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCC-eEEEEeCChhHHHHHHHHHcCcC
Q psy17626 137 CLADLDRQLKSHGG-QLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 137 ~L~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
.+.++..+++++|. .++.+.-+......++++++++.
T Consensus 70 ~f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~l~ 107 (176)
T 4f82_A 70 GYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTA 107 (176)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 45566677888899 88888888888899999998876
No 231
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=48.05 E-value=70 Score=22.53 Aligned_cols=75 Identities=11% Similarity=0.075 Sum_probs=51.9
Q ss_pred HHHHHhcCCeEEEEECChHHHHHHHHHHc--CcceEEEeec-ccchhHHHHHHHHHHHHhCCCeEEEecCceeecccccc
Q psy17626 24 DRQLKSHGGQLFIVQGSPISIFQKLKREL--NFTKLCFEQD-CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVI 100 (184)
Q Consensus 24 ~~~L~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~v~~~~~-~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~ 100 (184)
++.-.++|..+.+++-+.+..|-+.+.+. +++.|+.|.. |+.... .++.++...++++.+++-..++..+.++
T Consensus 63 ~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHtSv----AlrDAL~~v~~P~VEVHiSNihaRE~FR 138 (172)
T 3n8k_A 63 EREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSV----ALRDACAELSAPLIEVHISNVHAREEFR 138 (172)
T ss_dssp HHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCH----HHHHHHTTCCSCEEEEESSCTTSSCGGG
T ss_pred HHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhH----HHHHHHHhCCCCEEEEEcCCchhccccc
Confidence 33334579999999988877666665542 4778888853 344443 3444556678999999988888887776
Q ss_pred cc
Q psy17626 101 QT 102 (184)
Q Consensus 101 ~~ 102 (184)
..
T Consensus 139 hh 140 (172)
T 3n8k_A 139 RH 140 (172)
T ss_dssp GC
T ss_pred cc
Confidence 53
No 232
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=47.97 E-value=23 Score=28.26 Aligned_cols=41 Identities=7% Similarity=-0.085 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEE
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 177 (184)
.+..+.+-|+.+|++.++..|++.+++..|++.-.+..|++
T Consensus 136 ~~~~~~~lL~~~Gi~~i~apgEADd~iA~La~~g~~~~iiS 176 (379)
T 1ul1_X 136 HNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAAT 176 (379)
T ss_dssp CHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEEC
T ss_pred HHHHHHHHHHHcCCCeecCCCcHHHHHHHHHhcCCeEEEEe
Confidence 35667777888899999999999999999998876666654
No 233
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=47.57 E-value=29 Score=27.10 Aligned_cols=44 Identities=7% Similarity=-0.060 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
...+..+.+-|+.+|++.++..+++.+++..|+++-.+..|+++
T Consensus 129 ~~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~~g~~~~i~S~ 172 (340)
T 1b43_A 129 EMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQ 172 (340)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECS
T ss_pred HHHHHHHHHHHHHcCCcEEEcChhHHHHHHHHHHcCCEEEEEcc
Confidence 35567788888889999999999999999999887666666544
No 234
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6
Probab=47.55 E-value=68 Score=22.25 Aligned_cols=36 Identities=14% Similarity=0.011 Sum_probs=21.1
Q ss_pred HHHHHHHHHhc-CCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 20 LADLDRQLKSH-GGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 20 L~~L~~~L~~~-g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
+.++-+.|++. |.++.|..+.+........+..++.
T Consensus 98 ~~~~l~~l~~~~g~~~~i~t~~~~~~~~~~l~~~~l~ 134 (234)
T 2hcf_A 98 VRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGID 134 (234)
T ss_dssp HHHHHHHHHTCTTEEEEEECSSCHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHhCCCceEEEEcCCcHHHHHHHHHHCCch
Confidence 34444556666 6666666666655555556655544
No 235
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=47.54 E-value=36 Score=22.73 Aligned_cols=41 Identities=15% Similarity=0.077 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe
Q psy17626 134 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 174 (184)
....|.++.+++.+.|..++.+.-|..+.+.+++++++++-
T Consensus 48 ~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~ 88 (161)
T 3drn_A 48 EASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPF 88 (161)
T ss_dssp HHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCc
Confidence 34567788888888888888787777888888888887763
No 236
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=53.17 E-value=3.9 Score=30.59 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEee
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 61 (184)
+.....++=+.|++.|+++.++.|++......+++..+++.+|..-
T Consensus 137 ~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~f~~~ 182 (263)
T 2yj3_A 137 PRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEYYSNL 182 (263)
Confidence 3444556667788889999999999999999999999998776543
No 237
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Probab=47.40 E-value=65 Score=22.04 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc----eEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 21 ADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT----KLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~----~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
.++-+.|++.|.++.++.+.+...+..+.+..++. .++...+... .+.--..++..++..|+
T Consensus 100 ~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~kp~~~~~~~~~~~~~i 165 (226)
T 1te2_A 100 REAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPY-SKPHPQVYLDCAAKLGV 165 (226)
T ss_dssp HHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEECTTSSC-CTTSTHHHHHHHHHHTS
T ss_pred HHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhcCcHhhCcEEEeccccCC-CCCChHHHHHHHHHcCC
Confidence 34445566778888888877766666666665543 4444433221 11112244455555555
No 238
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=47.37 E-value=39 Score=23.10 Aligned_cols=39 Identities=5% Similarity=0.026 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCC-eEEEEECChHHHHHHHHHHcCcc
Q psy17626 17 LECLADLDRQLKSHGG-QLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
...|.++.+++++.|. .++.+.-+..+.+.+++++.+++
T Consensus 52 ~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~ 91 (167)
T 2wfc_A 52 LPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGAD 91 (167)
T ss_dssp HHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCC
Confidence 4456667777777788 77777766667777888877765
No 239
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=47.34 E-value=35 Score=22.78 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEE
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 59 (184)
....|.++.+++.+.|..++.+.-+..+.+.+++++++++--+.
T Consensus 48 ~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~ 91 (161)
T 3drn_A 48 EASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILV 91 (161)
T ss_dssp HHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEE
Confidence 56778889999988888888888788889999999988874443
No 240
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=47.34 E-value=40 Score=21.62 Aligned_cols=43 Identities=9% Similarity=0.034 Sum_probs=31.0
Q ss_pred HHHHHHHHHH--HhCC-CeEEEEeCChhHHHHHHHHHcCcCeEEEcc
Q psy17626 136 ECLADLDRQL--KSHG-GQLFIVQGSPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 136 ~~L~~L~~~L--~~~g-~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
+.|+++ +.+ ...| ....+..|++.+.|.+.+++.+++-|+...
T Consensus 72 ~~l~~~-~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~ 117 (138)
T 1q77_A 72 RRLREV-WEKLTGSTEIPGVEYRIGPLSEEVKKFVEGKGYELVVWAC 117 (138)
T ss_dssp HHHHHH-HHHHHSCCCCCCEEEECSCHHHHHHHHHTTSCCSEEEECS
T ss_pred HHHHHH-HHHhhccCCcceEEEEcCCHHHHHHHHHHhcCCCEEEEeC
Confidence 345555 442 3334 456677899999999999999999988753
No 241
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=46.73 E-value=94 Score=23.65 Aligned_cols=156 Identities=9% Similarity=-0.020 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHH--HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPIS--IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|..+-+..+.+.+++.|..+.+... ++.. .+.+.+...+++.|+..-... . +..+ +.+.+.|+++..++
T Consensus 79 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~-~----~~~~-~~l~~~~iPvV~i~ 152 (348)
T 3bil_A 79 HYFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNEE-C----ANQL-EDLQKQGMPVVLVD 152 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCGG-G----HHHH-HHHHHC-CCEEEES
T ss_pred cHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC-C----hHHH-HHHHhCCCCEEEEc
Confidence 47778888889999999999888753 3322 223333456888888753211 1 2223 34556799998876
Q ss_pred Cceee--cccccccccCCCCchhHHHHHHHhhhcccccc----CcchhHHHHHHHHHHHHHHHhCCCeE-EEEeCC--h-
Q psy17626 90 SHTLW--DPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHI----GYNRFRFLLECLADLDRQLKSHGGQL-FIVQGS--P- 159 (184)
Q Consensus 90 ~~~L~--~p~~i~~~~~~~~~~v~~~F~~~~~~~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L-~v~~g~--~- 159 (184)
...-- ....+..++ .-..+..-.... +.+-.+. ++.......+.+.-..+.|++.|+.. .+..++ .
T Consensus 153 ~~~~~~~~~~~V~~D~---~~~~~~a~~~L~-~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~v~~~~~~~~ 228 (348)
T 3bil_A 153 RELPGDSTIPTATSNP---QPGIAAAVELLA-HNNALPIGYLSGPMDTSTGRERLEDFKAACANSKIGEQLVFLGGYEQS 228 (348)
T ss_dssp SCCSCC-CCCEEEEEC---HHHHHHHHHHHH-HTTCCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCEEECCCSSHH
T ss_pred ccCCCCCCCCEEEeCh---HHHHHHHHHHHH-HCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCcCccEEEcCCCCHH
Confidence 53210 011122211 001111111111 1121111 22222344566777788888888632 233433 1
Q ss_pred --hHHHHHHHHHcCcCeEEEccc
Q psy17626 160 --ISIFQKLKRELNFTKLCFEQD 180 (184)
Q Consensus 160 --~~~l~~l~~~~~~~~v~~n~~ 180 (184)
.+.+.++.+...+ +||+..|
T Consensus 229 ~~~~~~~~ll~~~~~-ai~~~nD 250 (348)
T 3bil_A 229 VGFEGATKLLDQGAK-TLFAGDS 250 (348)
T ss_dssp HHHHHHHHHHHTTCS-EEEESSH
T ss_pred HHHHHHHHHHcCCCC-EEEEcCh
Confidence 2456677766557 8888655
No 242
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=46.57 E-value=37 Score=23.78 Aligned_cols=38 Identities=5% Similarity=0.029 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCe-EEEEeCChhHHHHHHHHHcCcC
Q psy17626 136 ECLADLDRQLKSHGGQ-LFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
..|.++.+++++.|.. ++.+..+......+++++++++
T Consensus 78 p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~ 116 (184)
T 3uma_A 78 PGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGM 116 (184)
T ss_dssp HHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCC
Confidence 3566777788888998 8888877777889999999886
No 243
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=46.55 E-value=94 Score=23.62 Aligned_cols=155 Identities=12% Similarity=-0.011 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC---hHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGS---PIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~---~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
.|..+-+..+.+.+++.|..+.+...+ +.. .+..+. ..+++.|+........ ..+...+...|+++..
T Consensus 74 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~-~~~vdGiIi~~~~~~~-----~~~~~~~~~~~iPvV~ 147 (349)
T 1jye_A 74 HAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLL-AQRVSGLIINYPLDDQ-----DAIAVEAACTNVPALF 147 (349)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHH-TTTCSCEEEESCCCHH-----HHHHHHHHTTTSCEEE
T ss_pred ccHHHHHHHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHH-HCCCCEEEEecCCCCh-----hHHHHHHhhCCCCEEE
Confidence 467777888899999999998887532 222 244443 4678888875322211 1122334457899988
Q ss_pred ecCceeecccccccccCCCCchhHHHHHHHhh---hcccccc----CcchhHHHHHHHHHHHHHHHhCCCeE-EEEeCC-
Q psy17626 88 FVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS---CIGTMHI----GYNRFRFLLECLADLDRQLKSHGGQL-FIVQGS- 158 (184)
Q Consensus 88 ~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~---~~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L-~v~~g~- 158 (184)
++...-.+...+..+ .+..-+...+ +.+-.+. ++.......+.+.-..+.|++.|++. .+..++
T Consensus 148 i~~~~~~~~~~V~~d-------~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~ 220 (349)
T 1jye_A 148 LDVSDQTPINSIIFS-------HEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDW 220 (349)
T ss_dssp SSSCTTSSSCEEEEC-------HHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEEECCS
T ss_pred EcccCCCCCCEEEEc-------hHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccccccCCC
Confidence 764210011112111 1111111111 1121111 22222234456677778888888753 233443
Q ss_pred -h---hHHHHHHHHHc-CcCeEEEcccc
Q psy17626 159 -P---ISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 159 -~---~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
. .+.+.++.+.. ..++||+..|.
T Consensus 221 ~~~~~~~~~~~ll~~~~~~~ai~~~nD~ 248 (349)
T 1jye_A 221 SAMSGFQQTMQMLNEGIVPTAMLVANDQ 248 (349)
T ss_dssp SHHHHHHHHHHHHHTTCCCSEEEESSHH
T ss_pred ChHHHHHHHHHHHhCCCCCCEEEECChH
Confidence 2 23455666554 68999987653
No 244
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=46.52 E-value=32 Score=29.91 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEccc
Q psy17626 138 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180 (184)
Q Consensus 138 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~ 180 (184)
..+.-+.|++.|+.+.++.||.......++++.|++.+|.+..
T Consensus 540 ~~~~i~~l~~~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~~~~~ 582 (723)
T 3j09_A 540 AKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVL 582 (723)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECSCC
T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCcEEEccCC
Confidence 3444456777899999999999999999999999999987643
No 245
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=46.46 E-value=55 Score=23.03 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChH
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPI 42 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~ 42 (184)
....++=+.|++.|.++.|+.+.+.
T Consensus 53 pg~~e~L~~L~~~G~~~~ivTn~~~ 77 (211)
T 2gmw_A 53 DGVIDAMRELKKMGFALVVVTNQSG 77 (211)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEECTH
T ss_pred cCHHHHHHHHHHCCCeEEEEECcCC
Confidence 3445555667778999998888773
No 246
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=46.24 E-value=86 Score=23.07 Aligned_cols=71 Identities=8% Similarity=0.048 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEC--------C------------h---------HHHHHHHHHHcCcceEEEeecccch-
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQG--------S------------P---------ISIFQKLKRELNFTKLCFEQDCEAL- 66 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g--------~------------~---------~~~l~~l~~~~~~~~v~~~~~~~~~- 66 (184)
-+.+.++++.|++.|+.+..... + + .....+++++.++..|.++-.+.|.
T Consensus 50 ~~~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~ 129 (290)
T 3tva_A 50 REHAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGCPAIGLHIGFVPES 129 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCT
T ss_pred HHHHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCccc
Confidence 35688899999999999877742 1 1 1234556778899999886544332
Q ss_pred -hHHH------HHHHHHHHHhCCCeEEE
Q psy17626 67 -WHKR------DKKVKKWCAENNITVKE 87 (184)
Q Consensus 67 -~~~r------d~~v~~~l~~~gi~~~~ 87 (184)
+..+ -..+.+.+++.||.+-.
T Consensus 130 ~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 157 (290)
T 3tva_A 130 SSPDYSELVRVTQDLLTHAANHGQAVHL 157 (290)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 1111 12333444567887543
No 247
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=46.24 E-value=84 Score=22.94 Aligned_cols=137 Identities=14% Similarity=0.043 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCce--eecccccccccCCC---CchhHHHHH
Q psy17626 41 PISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHT--LWDPEVVIQTNGNV---PPLTYKMYL 115 (184)
Q Consensus 41 ~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~--L~~p~~i~~~~~~~---~~~v~~~F~ 115 (184)
+.+...+.+++.|++.|=... ++.. .-+.+++.+++.|+++..++... +.........+... .-..+....
T Consensus 24 ~~~~~l~~~~~~G~~~vEl~~---~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i 99 (269)
T 3ngf_A 24 PFLERFRLAAEAGFGGVEFLF---PYDF-DADVIARELKQHNLTQVLFNMPPGDWAAGERGMAAISGREQEFRDNVDIAL 99 (269)
T ss_dssp CHHHHHHHHHHTTCSEEECSC---CTTS-CHHHHHHHHHHTTCEEEEEECCCSCTTTTCCBCTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEecC---CccC-CHHHHHHHHHHcCCcEEEEecCCCccccCCCCcCCCccHHHHHHHHHHHHH
Confidence 445556666677777774443 2222 23577888888888877654311 10000000000000 001122222
Q ss_pred HHhhhccccc----cC----c---chhHHHHHHHHHHHHHHHhCCCeEEEEe----------CChhHHHHHHHHHcCcCe
Q psy17626 116 HTVSCIGTMH----IG----Y---NRFRFLLECLADLDRQLKSHGGQLFIVQ----------GSPISIFQKLKRELNFTK 174 (184)
Q Consensus 116 ~~~~~~~~~~----~~----~---~r~~fl~~~L~~L~~~L~~~g~~L~v~~----------g~~~~~l~~l~~~~~~~~ 174 (184)
.....++.+. .+ . ..+..+.++|..+.+..++.|+.|.+-. ....+.+.+++++.+...
T Consensus 100 ~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~l~~~v~~~~ 179 (269)
T 3ngf_A 100 HYALALDCRTLHAMSGITEGLDRKACEETFIENFRYAADKLAPHGITVLVEPLNTRNMPGYFIVHQLEAVGLVKRVNRPN 179 (269)
T ss_dssp HHHHHTTCCEEECCBCBCTTSCHHHHHHHHHHHHHHHHHHHGGGTCEEEECCCCTTTSTTBSCCCHHHHHHHHHHHCCTT
T ss_pred HHHHHcCCCEEEEccCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCcccCccchhcCHHHHHHHHHHhCCCC
Confidence 3333333221 11 0 1245677888888888888999888752 123456778888887777
Q ss_pred EEEcccc
Q psy17626 175 LCFEQDC 181 (184)
Q Consensus 175 v~~n~~~ 181 (184)
|-..-|.
T Consensus 180 vg~~~D~ 186 (269)
T 3ngf_A 180 VAVQLDL 186 (269)
T ss_dssp EEEEEEH
T ss_pred CCeEEEh
Confidence 7666554
No 248
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=46.04 E-value=44 Score=22.17 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 174 (184)
...|.++.+++.+.| .++.+.-+..+.+.+++++++++-
T Consensus 55 ~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~ 93 (159)
T 2a4v_A 55 ASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPY 93 (159)
T ss_dssp HHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCc
Confidence 456777777888778 777777777778888988888763
No 249
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}
Probab=45.93 E-value=41 Score=23.57 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc----ceEEEeecccchhHHHHHHHHHHHHhCCCeE
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
.+.++=+.|++.|.++.++.+.+.. +...++..++ +.|+...+... .+---+.....+++.|+.-
T Consensus 99 ~~~~~l~~l~~~g~~~~i~Tn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~-~Kp~~~~~~~~~~~~~~~~ 167 (220)
T 2zg6_A 99 DTLEFLEGLKSNGYKLALVSNASPR-VKTLLEKFDLKKYFDALALSYEIKA-VKPNPKIFGFALAKVGYPA 167 (220)
T ss_dssp THHHHHHHHHTTTCEEEECCSCHHH-HHHHHHHHTCGGGCSEEC------------CCHHHHHHHHHCSSE
T ss_pred CHHHHHHHHHHCCCEEEEEeCCcHH-HHHHHHhcCcHhHeeEEEeccccCC-CCCCHHHHHHHHHHcCCCe
Confidence 3455666788889999999887664 6677777774 45555544321 1111123445566667754
No 250
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=45.90 E-value=78 Score=22.92 Aligned_cols=123 Identities=11% Similarity=0.004 Sum_probs=56.7
Q ss_pred ChHHHHHHHHHHcCcceEEEeeccc----------c--hhHHHHHHHHHHHHhCCCeEEEecCceeecccccccccCCCC
Q psy17626 40 SPISIFQKLKRELNFTKLCFEQDCE----------A--LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVP 107 (184)
Q Consensus 40 ~~~~~l~~l~~~~~~~~v~~~~~~~----------~--~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~~~~~ 107 (184)
.+.+...+.+++.|++.|=...... + .....-+.+++.+++.|+++....... + ..
T Consensus 22 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~--~----------~~ 89 (262)
T 3p6l_A 22 FPLTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYV--A----------EK 89 (262)
T ss_dssp SCHHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEEC--C----------SS
T ss_pred CCHHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccC--C----------cc
Confidence 3445555556667777664432100 0 112233567777777888766543211 0 01
Q ss_pred chhHHHHHHHhhhcccccc--CcchhHHHHHHHHHHHHHHHhCCCeEEEEe--C----ChhHHHHHHHHHcCcCeEEEcc
Q psy17626 108 PLTYKMYLHTVSCIGTMHI--GYNRFRFLLECLADLDRQLKSHGGQLFIVQ--G----SPISIFQKLKRELNFTKLCFEQ 179 (184)
Q Consensus 108 ~~v~~~F~~~~~~~~~~~~--~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~--g----~~~~~l~~l~~~~~~~~v~~n~ 179 (184)
...+.........++.+.. .+.. +.+..+....++.|+.+.+-. + ...+.+.++++. +...|-+.-
T Consensus 90 ~~~~~~~i~~A~~lGa~~v~~~~~~-----~~~~~l~~~a~~~gv~l~~En~~~~~~~~~~~~~~~ll~~-~~~~~g~~~ 163 (262)
T 3p6l_A 90 SSDWEKMFKFAKAMDLEFITCEPAL-----SDWDLVEKLSKQYNIKISVHNHPQPSDYWKPENLLKAISG-RSQSLGSCS 163 (262)
T ss_dssp TTHHHHHHHHHHHTTCSEEEECCCG-----GGHHHHHHHHHHHTCEEEEECCSSSSSSSSHHHHHHHHTT-SCTTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCH-----HHHHHHHHHHHHhCCEEEEEeCCCccccCCHHHHHHHHHh-CCCceEEEe
Confidence 2223334444445544321 1111 223455555566677766543 1 123445556654 444454444
Q ss_pred c
Q psy17626 180 D 180 (184)
Q Consensus 180 ~ 180 (184)
|
T Consensus 164 D 164 (262)
T 3p6l_A 164 D 164 (262)
T ss_dssp E
T ss_pred c
Confidence 3
No 251
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=45.84 E-value=39 Score=23.40 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCeEE-EEECChHHHHHHHHHHcCcc
Q psy17626 18 ECLADLDRQLKSHGGQLF-IVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~-v~~g~~~~~l~~l~~~~~~~ 55 (184)
..+.++.+++++.|..++ ++..+..+...+++++.+.+
T Consensus 65 p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~ 103 (173)
T 3mng_A 65 PGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAE 103 (173)
T ss_dssp HHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCC
Confidence 356666777777787777 47777777777777777765
No 252
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=45.77 E-value=29 Score=27.51 Aligned_cols=41 Identities=7% Similarity=-0.071 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEE
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 177 (184)
.+..+.+-|+.+|++.++..|++.+.+..|+++--+..|++
T Consensus 145 ~~~~i~~lL~~~GIp~i~apgEADaqiA~La~~g~~~~I~S 185 (363)
T 3ory_A 145 MVRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYASAS 185 (363)
T ss_dssp HHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSCSEEEC
T ss_pred HHHHHHHHHHHCCCCEEEeCccHHHHHHHHHHCCCeEEEEC
Confidence 46778888888999999999999999998886544555544
No 253
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=45.66 E-value=30 Score=27.04 Aligned_cols=42 Identities=7% Similarity=-0.054 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEE
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 59 (184)
+-+..+++-|+.+|++.++.-+++.+++..|++.-.++.|+.
T Consensus 130 ~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~~g~~~~i~S 171 (340)
T 1b43_A 130 MLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASAS 171 (340)
T ss_dssp HHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEEC
T ss_pred HHHHHHHHHHHHcCCcEEEcChhHHHHHHHHHHcCCEEEEEc
Confidence 456678888899999999999999999999998755555544
No 254
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=45.34 E-value=38 Score=21.96 Aligned_cols=44 Identities=9% Similarity=0.133 Sum_probs=29.3
Q ss_pred CChHHHHHHHHHHcCcceEEEeec-----ccchhHHHHHHHHHHHHhCCCe-EEEe
Q psy17626 39 GSPISIFQKLKRELNFTKLCFEQD-----CEALWHKRDKKVKKWCAENNIT-VKEF 88 (184)
Q Consensus 39 g~~~~~l~~l~~~~~~~~v~~~~~-----~~~~~~~rd~~v~~~l~~~gi~-~~~~ 88 (184)
|.+.+.+.++++...+ |++.+. ++|+.. ++++.|++.||+ +..+
T Consensus 7 ~~~~~~v~~~i~~~~V--vvfsk~t~~~p~Cp~C~----~ak~lL~~~gv~~~~~v 56 (118)
T 2wem_A 7 GGSAEQLDALVKKDKV--VVFLKGTPEQPQCGFSN----AVVQILRLHGVRDYAAY 56 (118)
T ss_dssp --CHHHHHHHHHHSSE--EEEESBCSSSBSSHHHH----HHHHHHHHTTCCCCEEE
T ss_pred ccHHHHHHHHhccCCE--EEEEecCCCCCccHHHH----HHHHHHHHcCCCCCEEE
Confidence 4566788888888765 566665 677654 456677788885 6554
No 255
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=45.33 E-value=28 Score=27.67 Aligned_cols=43 Identities=12% Similarity=-0.006 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecc
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~ 63 (184)
+..+++-|+.+|++.++.-|++.+.+..|++.--+..| ++.|.
T Consensus 146 ~~~i~~lL~~~GIp~i~apgEADaqiA~La~~g~~~~I-~S~D~ 188 (363)
T 3ory_A 146 VRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYAS-ASQDY 188 (363)
T ss_dssp HHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSCSEE-ECSSS
T ss_pred HHHHHHHHHHCCCCEEEeCccHHHHHHHHHHCCCeEEE-ECCCc
Confidence 67788888999999999999999999999875334444 43443
No 256
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=45.12 E-value=86 Score=22.77 Aligned_cols=156 Identities=15% Similarity=0.073 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHh-CCCeEEE
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAE-NNITVKE 87 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~-~gi~~~~ 87 (184)
.|..+-+..+.+.++++|..+.+... ++.. .+..+. ..+++.|+..-.-... .+.+.+.+ .|+++..
T Consensus 20 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~~~------~~~~~l~~~~~iPvV~ 92 (289)
T 1dbq_A 20 AYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMA-QKRVDGLLVMCSEYPE------PLLAMLEEYRHIPMVV 92 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEEECSCCCH------HHHHHHHHTTTSCEEE
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHH-hCCCCEEEEEeccCCH------HHHHHHHhccCCCEEE
Confidence 47777888888889999999888753 3332 244443 5688988875322111 12233444 6999888
Q ss_pred ecCceeecc--cccccccCCCCchhHHHHHHHhhhcccccc----CcchhHHHHHHHHHHHHHHHhCCCeEE---EEeCC
Q psy17626 88 FVSHTLWDP--EVVIQTNGNVPPLTYKMYLHTVSCIGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLF---IVQGS 158 (184)
Q Consensus 88 ~~~~~L~~p--~~i~~~~~~~~~~v~~~F~~~~~~~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~---v~~g~ 158 (184)
++...--.. ..+..++...-.. -..+.. +.+..+. +........+.+..+.+.+++.|+++. +..++
T Consensus 93 ~~~~~~~~~~~~~V~~d~~~~~~~-~~~~L~---~~G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~ 168 (289)
T 1dbq_A 93 MDWGEAKADFTDAVIDNAFEGGYM-AGRYLI---ERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGD 168 (289)
T ss_dssp EECSSCCSSSCEEEEECHHHHHHH-HHHHHH---HTTCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCC
T ss_pred EccCCCccCcCCEEEeCcHHHHHH-HHHHHH---HCCCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCC
Confidence 764321000 1121111000001 111111 1111111 111112233456667777888887542 23332
Q ss_pred --h---hHHHHHHHHH-cCcCeEEEccc
Q psy17626 159 --P---ISIFQKLKRE-LNFTKLCFEQD 180 (184)
Q Consensus 159 --~---~~~l~~l~~~-~~~~~v~~n~~ 180 (184)
. .+.+.++.+. .++++||+..|
T Consensus 169 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d 196 (289)
T 1dbq_A 169 FEPESGYRAMQQILSQPHRPTAVFCGGD 196 (289)
T ss_dssp SSHHHHHHHHHHHHTSSSCCSEEEESCH
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEECCc
Confidence 2 2345566654 47899998765
No 257
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A
Probab=45.12 E-value=39 Score=23.67 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=4.5
Q ss_pred HHHHHhCCCe
Q psy17626 75 KKWCAENNIT 84 (184)
Q Consensus 75 ~~~l~~~gi~ 84 (184)
+..++..|+.
T Consensus 117 ~~~l~~~gl~ 126 (225)
T 1nnl_A 117 EHVASKLNIP 126 (225)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCC
Confidence 3344445553
No 258
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=45.09 E-value=37 Score=26.09 Aligned_cols=124 Identities=12% Similarity=0.074 Sum_probs=70.7
Q ss_pred HHHHHH-HHHHHHHHHh--cCCeEEEEEC-ChHHHHHHHHHHc---CcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 14 RFLLEC-LADLDRQLKS--HGGQLFIVQG-SPISIFQKLKREL---NFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 14 ~fl~~s-L~~L~~~L~~--~g~~L~v~~g-~~~~~l~~l~~~~---~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
.-|.+. +..+++-|+. +|++.+...| ++.+++..|++.. +...++++.|.+-. + +-..+|.+.
T Consensus 97 e~L~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~G~~v~IvS~DkDl~---------Q-lv~~~v~v~ 166 (290)
T 1exn_A 97 KALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWD---------T-LLTDKVSRF 166 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEECSCGGGG---------G-GCCSSEEEE
T ss_pred hhHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHHCCCcEEEEeCCCChh---------h-cCCCCEEEE
Confidence 345556 7778888888 9999999999 9999999999874 55566666665421 1 111234433
Q ss_pred EecCceeecccccccccCCCCc-hhHHHHHHHhh-----hccccccCcchh-HHHH--HHHHHHHHHHHhC
Q psy17626 87 EFVSHTLWDPEVVIQTNGNVPP-LTYKMYLHTVS-----CIGTMHIGYNRF-RFLL--ECLADLDRQLKSH 148 (184)
Q Consensus 87 ~~~~~~L~~p~~i~~~~~~~~~-~v~~~F~~~~~-----~~~~~~~~~~r~-~fl~--~~L~~L~~~L~~~ 148 (184)
.......+++..+..+-| -.| .-+..|....- -.+.|..|+... .++. .+|+++-+.+.+.
T Consensus 167 ~~~~~~~~~~~~v~ek~G-v~p~~q~iD~~~L~GD~sDniPGVpGIG~KTA~kLL~~~gsle~i~~~~~~~ 236 (290)
T 1exn_A 167 SFTTRREYHLRDMYEHHN-VDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLP 236 (290)
T ss_dssp ETTTTEEECGGGHHHHHS-SSSHHHHHHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCSHHHHHHHCSCS
T ss_pred ECCCCEEEcHHHHHHHcC-CCHHHHHHHHHHhcCCCcCCCCCCCcCCHhHHHHHHHHcCCHHHHHHHHHHh
Confidence 322334566666655433 234 34443433322 113345555444 3443 3566666665544
No 259
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3
Probab=45.06 E-value=67 Score=21.48 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=8.1
Q ss_pred HHHHHHhcCCeEEEEECC
Q psy17626 23 LDRQLKSHGGQLFIVQGS 40 (184)
Q Consensus 23 L~~~L~~~g~~L~v~~g~ 40 (184)
+-+.|++.|.++.+..+.
T Consensus 90 ~l~~l~~~g~~~~i~t~~ 107 (190)
T 2fi1_A 90 LLEDISNQGGRHFLVSHR 107 (190)
T ss_dssp HHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHCCCcEEEEECC
Confidence 333444445555554443
No 260
>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*
Probab=44.99 E-value=19 Score=28.16 Aligned_cols=45 Identities=9% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHH----cCc--ceEEEee
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE----LNF--TKLCFEQ 61 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~----~~~--~~v~~~~ 61 (184)
+.-..+|-+.|++.|+..+|+.|.+.+++.-+++. ++| ++|+-.+
T Consensus 145 ~~~~~~l~~~l~~~G~~v~ivSas~~~~v~~~a~~~~~~ygIp~e~ViG~~ 195 (327)
T 4as2_A 145 FSGQRELYNKLMENGIEVYVISAAHEELVRMVAADPRYGYNAKPENVIGVT 195 (327)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHTCGGGSCCCCGGGEEEEC
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhhcccccCCCHHHeEeee
Confidence 34567899999999999999999999999999987 555 5676653
No 261
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=44.90 E-value=86 Score=22.68 Aligned_cols=162 Identities=12% Similarity=0.099 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHHH---HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPISI---FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~~---l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.|..+-+..+.+.++++|..+.+... ++... +..+ ...+++.|..... ... .....+ +.+.+.|+++..+
T Consensus 14 ~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l-~~~~vdgiIi~~~-~~~--~~~~~~-~~~~~~~iPvV~i 88 (271)
T 2dri_A 14 PFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDL-TVRGTKILLINPT-DSD--AVGNAV-KMANQANIPVITL 88 (271)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHH-TTTTEEEEEECCS-STT--TTHHHH-HHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHH-HHcCCCEEEEeCC-ChH--HHHHHH-HHHHHCCCcEEEe
Confidence 47778888899999999999888753 33322 3333 3467888887532 111 111223 3345679999887
Q ss_pred cCceeecc--cccccccCCCCchhHHHHHHHh---hhccccccCcchhHHHHHHHHHHHHHHHhCCCeEEE-EeCC--h-
Q psy17626 89 VSHTLWDP--EVVIQTNGNVPPLTYKMYLHTV---SCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFI-VQGS--P- 159 (184)
Q Consensus 89 ~~~~L~~p--~~i~~~~~~~~~~v~~~F~~~~---~~~~~~~~~~~r~~fl~~~L~~L~~~L~~~g~~L~v-~~g~--~- 159 (184)
+...--.. ..+..++...-+..-....... .+...- .++.......+.+.-..+.|++.|+++.. ..++ .
T Consensus 89 ~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i-~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~ 167 (271)
T 2dri_A 89 DRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIEL-QGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRI 167 (271)
T ss_dssp SSCCSSSCCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEE-ECCTTCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCHH
T ss_pred cCCCCCCceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEE-ECCCCCccHhHHHHHHHHHHhcCCCEEEEecCCCCCHH
Confidence 65321100 1122211000011111111110 011110 12222233456677777888888887543 3332 2
Q ss_pred --hHHHHHHHHHc-CcCeEEEcccc
Q psy17626 160 --ISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 160 --~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
.+.+.++.+.. .+++||+..|.
T Consensus 168 ~~~~~~~~ll~~~~~~~ai~~~nD~ 192 (271)
T 2dri_A 168 KGLNVMQNLLTAHPDVQAVFAQNDE 192 (271)
T ss_dssp HHHHHHHHHHHHCTTCCEEEESSHH
T ss_pred HHHHHHHHHHHhCCCccEEEECCCc
Confidence 23566666655 68999987663
No 262
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=44.86 E-value=59 Score=21.88 Aligned_cols=38 Identities=3% Similarity=0.054 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCeEEEEeCChh---------------HHHHHHHHHcC--cCeEEE
Q psy17626 140 DLDRQLKSHGGQLFIVQGSPI---------------SIFQKLKRELN--FTKLCF 177 (184)
Q Consensus 140 ~L~~~L~~~g~~L~v~~g~~~---------------~~l~~l~~~~~--~~~v~~ 177 (184)
++=+.|++.|.++.++.+.+. ..+..+++..+ ++.+|.
T Consensus 34 ~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 88 (179)
T 3l8h_A 34 QAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGGVVDAIFM 88 (179)
T ss_dssp HHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCCCceeEEEE
Confidence 344556777999999987764 55677778888 888885
No 263
>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}
Probab=44.72 E-value=48 Score=23.26 Aligned_cols=65 Identities=9% Similarity=-0.073 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+..+.++=+.|++.|+++.|..|.+......+.. .-.+.|+...+... .+---+-+...+++.|+
T Consensus 38 ~pg~~e~L~~L~~~g~~~~i~T~~~~~~~~~~~~-~~~d~v~~~~~~~~-~KP~p~~~~~a~~~l~~ 102 (196)
T 2oda_A 38 TPGAQNALKALRDQGMPCAWIDELPEALSTPLAA-PVNDWMIAAPRPTA-GWPQPDACWMALMALNV 102 (196)
T ss_dssp CTTHHHHHHHHHHHTCCEEEECCSCHHHHHHHHT-TTTTTCEECCCCSS-CTTSTHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHHHCCCEEEEEcCChHHHHHHhcC-ccCCEEEECCcCCC-CCCChHHHHHHHHHcCC
Confidence 3555666667777899999999988877766665 44567777665431 11111244455566665
No 264
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=44.62 E-value=88 Score=22.73 Aligned_cols=155 Identities=19% Similarity=0.173 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChH---HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHh-CCCeEEE
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPI---SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAE-NNITVKE 87 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~-~gi~~~~ 87 (184)
.|..+-+..+.+.+++.|..+.+... ++. +.+..+. ..+++.|+..-.... +..+ +.+.+ .|+++..
T Consensus 34 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~~-----~~~~-~~l~~~~~iPvV~ 106 (296)
T 3brq_A 34 IYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLL-DLRCDAIMIYPRFLS-----VDEI-DDIIDAHSQPIMV 106 (296)
T ss_dssp -CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHH-HTTCSEEEEECSSSC-----HHHH-HHHHHTCSSCEEE
T ss_pred chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH-hcCCCEEEEecCCCC-----hHHH-HHHHhcCCCCEEE
Confidence 46677788888889999999988753 333 2344444 468888887532111 1223 33456 7999988
Q ss_pred ecCceeecccccccccCCCCchhHHHHHHHhh---hcccccc----CcchhHHHHHHHHHHHHHHHhCCCeEE---EEeC
Q psy17626 88 FVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS---CIGTMHI----GYNRFRFLLECLADLDRQLKSHGGQLF---IVQG 157 (184)
Q Consensus 88 ~~~~~L~~p~~i~~~~~~~~~~v~~~F~~~~~---~~~~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~---v~~g 157 (184)
++... +...+..= .+..+..-....+ +.+..+. +.....+..+.+.-..+.+++.|+++. +..+
T Consensus 107 ~~~~~--~~~~~~~V----~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~ 180 (296)
T 3brq_A 107 LNRRL--RKNSSHSV----WCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANG 180 (296)
T ss_dssp ESCCC--SSSGGGEE----CCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECC
T ss_pred Ecccc--CCCCCCEE----EEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeC
Confidence 76432 11111000 0111111111111 1121111 122223445667778888888887642 3433
Q ss_pred C--h---hHHHHHHHHH-cCcCeEEEcccc
Q psy17626 158 S--P---ISIFQKLKRE-LNFTKLCFEQDC 181 (184)
Q Consensus 158 ~--~---~~~l~~l~~~-~~~~~v~~n~~~ 181 (184)
+ . .+.+.++.+. .+++.||+..+.
T Consensus 181 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 210 (296)
T 3brq_A 181 KWTPASGAEGVEMLLERGAKFSALVASNDD 210 (296)
T ss_dssp CSSHHHHHHHHHHHHTC--CCSEEEESSHH
T ss_pred CCChhHHHHHHHHHHhCCCCCCEEEECChH
Confidence 2 2 2345566554 478999987653
No 265
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A
Probab=44.48 E-value=77 Score=23.19 Aligned_cols=10 Identities=10% Similarity=0.275 Sum_probs=4.5
Q ss_pred ChHHHHHHHH
Q psy17626 40 SPISIFQKLK 49 (184)
Q Consensus 40 ~~~~~l~~l~ 49 (184)
...+.|..|.
T Consensus 134 g~~~~L~~L~ 143 (261)
T 1yns_A 134 DVVPAVRKWR 143 (261)
T ss_dssp THHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3444454443
No 266
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=44.46 E-value=91 Score=22.82 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=44.9
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcCcc-eEEEeecc------------cchhHHHHHHHHHHHHhCCCeEEEecCc
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFT-KLCFEQDC------------EALWHKRDKKVKKWCAENNITVKEFVSH 91 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~-~v~~~~~~------------~~~~~~rd~~v~~~l~~~gi~~~~~~~~ 91 (184)
++|.+.|+.+.+..|.+...+..+.+..+.+ .+++.... .+.....-..+.+.+++.|+.+..+.+.
T Consensus 33 ~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (290)
T 3dnp_A 33 EYVKKKGIYVTLVTNRHFRSAQKIAKSLKLDAKLITHSGAYIAEKIDAPFFEKRISDDHTFNIVQVLESYQCNIRLLHEK 112 (290)
T ss_dssp HHHHHTTCEEEEBCSSCHHHHHHHHHHTTCCSCEEEGGGTEEESSTTSCSEECCCCHHHHHHHHHHHHTSSCEEEEECSS
T ss_pred HHHHHCCCEEEEECCCChHHHHHHHHHcCCCCeEEEcCCeEEEcCCCCEEEecCCCHHHHHHHHHHHHHcCceEEEEECC
Confidence 3446679999999999998888999888776 22221110 0112233345666777889888777665
Q ss_pred eee
Q psy17626 92 TLW 94 (184)
Q Consensus 92 ~L~ 94 (184)
..+
T Consensus 113 ~~~ 115 (290)
T 3dnp_A 113 YSI 115 (290)
T ss_dssp CEE
T ss_pred cEE
Confidence 444
No 267
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=44.31 E-value=32 Score=26.96 Aligned_cols=42 Identities=7% Similarity=-0.101 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEE
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 177 (184)
..+..+.+-|+.+|++.++..|++.+++..|+++--+..|++
T Consensus 127 ~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~g~~~~I~S 168 (346)
T 2izo_A 127 IMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAAS 168 (346)
T ss_dssp HHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEEC
T ss_pred HHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhCCCeEEEEC
Confidence 456777888888999999999999999999987534455543
No 268
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=43.78 E-value=19 Score=24.96 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=35.2
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHH--HcCcceEEEeecccchhHHHHHHHHHHHHhCCCe
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKR--ELNFTKLCFEQDCEALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~--~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~ 84 (184)
+.|++.|+++.|..|+ .....+++ ..+++ ++... . ..-..++.++++.|+.
T Consensus 46 ~~Lk~~Gi~~~I~Tg~--~~~~~~l~~l~lgi~-~~~g~----~--~K~~~l~~~~~~~gi~ 98 (168)
T 3ewi_A 46 SLLKKSGIEVRLISER--ACSKQTLSALKLDCK-TEVSV----S--DKLATVDEWRKEMGLC 98 (168)
T ss_dssp HHHHHTTCEEEEECSS--CCCHHHHHTTCCCCC-EECSC----S--CHHHHHHHHHHHTTCC
T ss_pred HHHHHCCCEEEEEeCc--HHHHHHHHHhCCCcE-EEECC----C--ChHHHHHHHHHHcCcC
Confidence 5667789999999999 56667777 67887 44321 1 1234677778887774
No 269
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=43.52 E-value=79 Score=21.89 Aligned_cols=77 Identities=12% Similarity=0.046 Sum_probs=52.6
Q ss_pred HHHHHHHhcCCeEEEEECChHHHHHHHHHHc--CcceEEEeec-ccchhHHHHHHHHHHHHhCC-CeEEEecCceeeccc
Q psy17626 22 DLDRQLKSHGGQLFIVQGSPISIFQKLKREL--NFTKLCFEQD-CEALWHKRDKKVKKWCAENN-ITVKEFVSHTLWDPE 97 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~v~~~~~-~~~~~~~rd~~v~~~l~~~g-i~~~~~~~~~L~~p~ 97 (184)
.|++.-.++|..+.+++.+.+..|-+.+.+. +.+.|+.|.. |+.+.. .++.++...+ +++.+++-..++..+
T Consensus 39 ~l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSv----AlrDAl~~v~~~P~VEVHiSNi~aRE 114 (156)
T 1gtz_A 39 LCVKAAAAHGGTVDFRQSNHEGELVDWIHEARLNHCGIVINPAAYSHTSV----AILDALNTCDGLPVVEVHISNIHQRE 114 (156)
T ss_dssp HHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHCSEEEEECTTHHHHCH----HHHHHHHTSTTCCEEEEESSCGGGSC
T ss_pred HHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccH----HHHHHHHhcCCCCEEEEEecCccccc
Confidence 3344445679999999988887666655443 4778999853 333333 4455556667 999999988888887
Q ss_pred ccccc
Q psy17626 98 VVIQT 102 (184)
Q Consensus 98 ~i~~~ 102 (184)
.++..
T Consensus 115 ~FRh~ 119 (156)
T 1gtz_A 115 PFRHH 119 (156)
T ss_dssp GGGSC
T ss_pred ccccc
Confidence 76553
No 270
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=43.47 E-value=31 Score=27.06 Aligned_cols=45 Identities=11% Similarity=-0.042 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecc
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~ 63 (184)
+.+..+++-|+.+|++.++.-|++.+++..|++.--+..| .+.|.
T Consensus 127 ~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~g~~~~I-~S~D~ 171 (346)
T 2izo_A 127 IMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAA-ASQDY 171 (346)
T ss_dssp HHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEE-ECSSS
T ss_pred HHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhCCCeEEE-ECCCC
Confidence 4567788888999999999999999999999986334444 44443
No 271
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=43.29 E-value=51 Score=21.85 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceE
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL 57 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v 57 (184)
....|.++.+++++.| .++.+.-+..+.+.+++++++++--
T Consensus 54 ~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~ 94 (159)
T 2a4v_A 54 QASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYH 94 (159)
T ss_dssp HHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSE
T ss_pred HHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCce
Confidence 4556667777777667 6666666666667777777766533
No 272
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=43.10 E-value=16 Score=18.07 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=21.2
Q ss_pred HHHHHHhCCCeEEEEeCChhHHHHHHHH
Q psy17626 141 LDRQLKSHGGQLFIVQGSPISIFQKLKR 168 (184)
Q Consensus 141 L~~~L~~~g~~L~v~~g~~~~~l~~l~~ 168 (184)
+...|+++|-|..++-.++.+...+|.+
T Consensus 2 V~~~LR~lgePi~lFGE~~~~Rr~RLr~ 29 (31)
T 1mzw_B 2 VKASLRALGEPITLFGEGPAERRERLRN 29 (31)
T ss_dssp HHHHHHHTTCCSEETTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCeeecCCChHHHHHHHHH
Confidence 4678999999999876667777766643
No 273
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=49.11 E-value=5.1 Score=29.98 Aligned_cols=42 Identities=26% Similarity=0.393 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
...++-+.|++.|+++.++.|++......++++.|++.+|.+
T Consensus 140 g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~f~~ 181 (263)
T 2yj3_A 140 NLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEYYSN 181 (263)
Confidence 344445567778999999999999988899999999887754
No 274
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=43.08 E-value=9.5 Score=24.48 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=11.6
Q ss_pred HHHHHHHhCCCeEEEEeCChhH
Q psy17626 140 DLDRQLKSHGGQLFIVQGSPIS 161 (184)
Q Consensus 140 ~L~~~L~~~g~~L~v~~g~~~~ 161 (184)
++-+.|++.|+++.++.+.+..
T Consensus 25 ~~l~~L~~~G~~~~i~S~~~~~ 46 (137)
T 2pr7_A 25 NLLAAAKKNGVGTVILSNDPGG 46 (137)
T ss_dssp HHHHHHHHTTCEEEEEECSCCG
T ss_pred HHHHHHHHCCCEEEEEeCCCHH
Confidence 3334455556666666554433
No 275
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=42.89 E-value=41 Score=21.13 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEE
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 58 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~ 58 (184)
..|..+.+.+++.|.++.+.. +.+.+.++.+..+.+.++
T Consensus 61 ~~L~~~~~~~~~~g~~l~l~~--~~~~v~~~l~~~gl~~~~ 99 (117)
T 1h4x_A 61 GLVLGRMRELEAVAGRTILLN--PSPTMRKVFQFSGLGPWM 99 (117)
T ss_dssp HHHHHHHHHHHTTTCEEEEES--CCHHHHHHHHHTTCGGGE
T ss_pred HHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHhCCceEE
Confidence 345555555566666665542 223445555555555544
No 276
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=42.88 E-value=43 Score=23.43 Aligned_cols=39 Identities=8% Similarity=0.062 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCe-EEEEECChHHHHHHHHHHcCcc
Q psy17626 17 LECLADLDRQLKSHGGQ-LFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
...|.++.+++++.|.. ++.+..+..+...+++++++++
T Consensus 77 ~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~ 116 (184)
T 3uma_A 77 LPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGM 116 (184)
T ss_dssp HHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCC
Confidence 45677788888888988 8888878778888899888876
No 277
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* 3nvl_A
Probab=42.82 E-value=1.2e+02 Score=25.66 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEE----C------ChHHHHHHHHHHcCcceEEEe-----ecccch-hHHHHHHHH---HHH
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQ----G------SPISIFQKLKRELNFTKLCFE-----QDCEAL-WHKRDKKVK---KWC 78 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~----g------~~~~~l~~l~~~~~~~~v~~~-----~~~~~~-~~~rd~~v~---~~l 78 (184)
+.|.++-+..++.|..|+++= | +-...|.+++++.++..||.| +|..|. ...--+.++ +.+
T Consensus 108 ~~l~~~~~~~~~~~~~lHl~GL~SdGGVHSh~~Hl~~l~~~a~~~g~~~v~vH~f~DGRD~~p~S~~~~~~~l~~~~~~~ 187 (561)
T 3igz_B 108 EGYRYLHGAFSKEGSTLHLIGLLSDGGVHSRDNQIYSIIEHAVKDGAKRIRVHALYDGRDVPDGSSFRFTDELEAVLAKV 187 (561)
T ss_dssp HHHHHHHHHHTSTTCCEEEEEECSSCCSSCCHHHHHHHHHHHHHTTCCEEEEEEEECSSSSCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEeccCCCccchHHHHHHHHHHHHHcCCCeEEEEEEccCCCCCcchHHHHHHHHHHHHHHH
Confidence 456667777777889999871 2 344567778888999989886 566665 233334554 347
Q ss_pred HhCCC--eEEEecCcee
Q psy17626 79 AENNI--TVKEFVSHTL 93 (184)
Q Consensus 79 ~~~gi--~~~~~~~~~L 93 (184)
++.|+ ++-+..+++.
T Consensus 188 ~~~g~~g~iasv~GRyy 204 (561)
T 3igz_B 188 RQNGCDAAIASGGGRMF 204 (561)
T ss_dssp HTTTCEEEEEEEEETTT
T ss_pred HhcCCCceEEEEeccch
Confidence 77888 7777777766
No 278
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A
Probab=42.72 E-value=43 Score=23.46 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe--EEE
Q psy17626 138 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK--LCF 177 (184)
Q Consensus 138 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~--v~~ 177 (184)
+.++=+.|++.|+++.|+.+.+...+..+.+..|+.. +|.
T Consensus 91 ~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~f~ 132 (225)
T 1nnl_A 91 IRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFA 132 (225)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHcCCCcccEEe
Confidence 4445556667799999999988888888899999873 554
No 279
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=42.33 E-value=96 Score=22.52 Aligned_cols=70 Identities=10% Similarity=0.178 Sum_probs=45.1
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcCcce----EEEeecc------------cchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTK----LCFEQDC------------EALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~----v~~~~~~------------~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
++|.+.|+.+.+..|.+...+..+.+..+... +++.... .+.....-..+.+.+++.++.+..+
T Consensus 32 ~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~i~~nGai~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 111 (279)
T 3mpo_A 32 QAAKAQGIKVVLCTGRPLTGVQPYLDAMDIDGDDQYAITFNGSVAQTISGKVLTNHSLTYEDYIDLEAWARKVRAHFQIE 111 (279)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHHHTTCCSSSCEEEEGGGTEEEETTSCEEEECCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCCCEEEEcCcEEEECCCCCEEEecCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 44667799999999999998899998877642 2211110 0112233455667778888888776
Q ss_pred cCceee
Q psy17626 89 VSHTLW 94 (184)
Q Consensus 89 ~~~~L~ 94 (184)
.+...+
T Consensus 112 ~~~~~~ 117 (279)
T 3mpo_A 112 TPDYIY 117 (279)
T ss_dssp CSSCEE
T ss_pred ECCEEE
Confidence 655444
No 280
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=42.25 E-value=62 Score=23.32 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHHHHcCcC
Q psy17626 136 ECLADLDRQLKSHGG-QLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
..|.++.+++++.|. .++.+..+..+...+++++++.+
T Consensus 55 ~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 93 (241)
T 1nm3_A 55 PRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSE 93 (241)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCC
Confidence 457778888888899 88888877778888999998875
No 281
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=41.94 E-value=96 Score=22.41 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCeEEEEEC------ChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQG------SPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g------~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
+.+.++++.|++.|+.+..... +..+...+++++.++..|.++... ..-+.+.+.+++.||.+.
T Consensus 63 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~~~-----~~~~~l~~~a~~~gv~l~ 132 (262)
T 3p6l_A 63 QTQKEIKELAASKGIKIVGTGVYVAEKSSDWEKMFKFAKAMDLEFITCEPAL-----SDWDLVEKLSKQYNIKIS 132 (262)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECCSSTTHHHHHHHHHHHTTCSEEEECCCG-----GGHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEeccCCccHHHHHHHHHHHHHcCCCEEEecCCH-----HHHHHHHHHHHHhCCEEE
Confidence 4578899999999999876642 234556778888999999997421 122466777778898754
No 282
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=41.87 E-value=83 Score=21.62 Aligned_cols=76 Identities=9% Similarity=-0.020 Sum_probs=53.9
Q ss_pred HHHHHHhcCCeEEEEECChHHHHHHHHHHc--C-cceEEEeec-ccchhHHHHHHHHHHHHhCCCeEEEecCceeecccc
Q psy17626 23 LDRQLKSHGGQLFIVQGSPISIFQKLKREL--N-FTKLCFEQD-CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEV 98 (184)
Q Consensus 23 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~--~-~~~v~~~~~-~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~ 98 (184)
|++.-.++|..+.+++.+.+..|-+...+. + .+.|+.|.. |+.+.. .++.++...++++..++-..++..+.
T Consensus 33 l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE~ 108 (149)
T 2uyg_A 33 CEAWGAELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSY----ALLDAIRAQPLPVVEVHLTNLHAREE 108 (149)
T ss_dssp HHHHHHHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCH----HHHHHHHTSCSCEEEEESSCGGGSCG
T ss_pred HHHHHHHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccH----HHHHHHHhCCCCEEEEEecCcccccc
Confidence 333345569999999999987777766654 2 678999853 444444 34555666789999999888888877
Q ss_pred cccc
Q psy17626 99 VIQT 102 (184)
Q Consensus 99 i~~~ 102 (184)
++..
T Consensus 109 FRh~ 112 (149)
T 2uyg_A 109 FRRH 112 (149)
T ss_dssp GGGC
T ss_pred cccc
Confidence 7553
No 283
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=41.82 E-value=30 Score=23.81 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=24.2
Q ss_pred HHHHhCCCeEEEEeCCh-hHHHHHHHHHcCcCeEE
Q psy17626 143 RQLKSHGGQLFIVQGSP-ISIFQKLKRELNFTKLC 176 (184)
Q Consensus 143 ~~L~~~g~~L~v~~g~~-~~~l~~l~~~~~~~~v~ 176 (184)
+.|++.|+++.++.+.+ ...+..+.+..++...|
T Consensus 78 ~~L~~~G~~v~ivT~~~~~~~~~~~l~~~gl~~~f 112 (187)
T 2wm8_A 78 KRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYF 112 (187)
T ss_dssp HHHHHHTCCEEEEECCSCHHHHHHHHHHTTCTTTE
T ss_pred HHHHHCCceEEEEeCCCChHHHHHHHHHcCcHhhc
Confidence 34455588888888877 57777777788876544
No 284
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=41.73 E-value=1e+02 Score=22.69 Aligned_cols=67 Identities=15% Similarity=0.229 Sum_probs=40.8
Q ss_pred HHHhcCCeEEEEECChHHHHHHHHHHcCcce-----EEEeecc------------cchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 26 QLKSHGGQLFIVQGSPISIFQKLKRELNFTK-----LCFEQDC------------EALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 26 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~-----v~~~~~~------------~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
+|++.|+.+.+..|.+...+..++++.+.+. |..|-.+ .+-....-..+.+.+++.++.+..+
T Consensus 33 ~l~~~Gi~vviaTGR~~~~~~~~~~~l~l~~~~~~~I~~NGa~i~~~~~~~~i~~~~l~~~~~~~i~~~~~~~~~~~~~~ 112 (282)
T 1rkq_A 33 AARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREVGSHFHAL 112 (282)
T ss_dssp HHHHTTCEEEEECSSCGGGTHHHHHHTTCCSTTCEEEEGGGTEEEETTTCCEEEECCBCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCCCCeEEEeCCeEEEECCCCeEEEEecCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3456799999999999888888888877652 2222111 0111223345556666668877666
Q ss_pred cCce
Q psy17626 89 VSHT 92 (184)
Q Consensus 89 ~~~~ 92 (184)
.+..
T Consensus 113 ~~~~ 116 (282)
T 1rkq_A 113 DRTT 116 (282)
T ss_dssp CSSC
T ss_pred ECCE
Confidence 4443
No 285
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=41.56 E-value=1.1e+02 Score=22.90 Aligned_cols=160 Identities=11% Similarity=-0.001 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHhc-CCeEEEEEC--ChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 14 RFLLECLADLDRQLKSH-GGQLFIVQG--SPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~-g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
.|..+-+..+.+.+++. |..+.+... ++.. .+..+. ..+++.|+..-.. ....+..+ +.+.+.|+++..
T Consensus 18 ~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~---~~~~~~~~-~~~~~~~iPvV~ 92 (325)
T 2x7x_A 18 SWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFM-DEGVDLLIISANE---AAPMTPIV-EEAYQKGIPVIL 92 (325)
T ss_dssp HHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSS---HHHHHHHH-HHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCC---HHHHHHHH-HHHHHCCCeEEE
Confidence 46667778888899998 999988753 3432 344444 4689988876321 11112233 344567999988
Q ss_pred ecCceeec--ccccccccCCCCchhHHHHHHHhhhc-cccc----cCcchhHHHHHHHHHHHHHHHhC-CCeEE-EEeCC
Q psy17626 88 FVSHTLWD--PEVVIQTNGNVPPLTYKMYLHTVSCI-GTMH----IGYNRFRFLLECLADLDRQLKSH-GGQLF-IVQGS 158 (184)
Q Consensus 88 ~~~~~L~~--p~~i~~~~~~~~~~v~~~F~~~~~~~-~~~~----~~~~r~~fl~~~L~~L~~~L~~~-g~~L~-v~~g~ 158 (184)
++...--+ ...+..++ ....+..-......+ +-.+ .+........+.+.-+.+.+++. |+++. +..++
T Consensus 93 ~~~~~~~~~~~~~V~~D~---~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~~~~~~~ 169 (325)
T 2x7x_A 93 VDRKILSDKYTAYIGADN---YEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGFMAAISKFPDIKLIDKADAA 169 (325)
T ss_dssp ESSCCSSSCSSEEEEECH---HHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEEEEEEEECT
T ss_pred eCCCCCCcceeEEEecCH---HHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEeeecCC
Confidence 76532110 01121111 001111111111111 1111 12222234456677788889888 77653 33333
Q ss_pred --h---hHHHHHHHHHc-CcCeEEEcccc
Q psy17626 159 --P---ISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 159 --~---~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
. .+.+.++.++. .+++||+..|.
T Consensus 170 ~~~~~~~~~~~~ll~~~~~~~aI~~~nd~ 198 (325)
T 2x7x_A 170 WERGPAEIEMDSMLRRHPKIDAVYAHNDR 198 (325)
T ss_dssp TSHHHHHHHHHHHHHHCSCCCEEEESSTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 2 24566776665 68999987653
No 286
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=41.52 E-value=31 Score=21.28 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=6.0
Q ss_pred HHHHHHHhcCCeEEE
Q psy17626 22 DLDRQLKSHGGQLFI 36 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v 36 (184)
.+.+.+++.|+++.+
T Consensus 67 ~~~~~~~~~g~~l~l 81 (110)
T 1sbo_A 67 VILKDAKINGKEFIL 81 (110)
T ss_dssp HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCEEEE
Confidence 333333444444433
No 287
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=41.45 E-value=33 Score=21.65 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEE
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 58 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~ 58 (184)
+..|..+.+.+++.|+++.+.. +...+.++.+..+.+.++
T Consensus 60 l~~L~~~~~~~~~~g~~l~l~~--~~~~v~~~l~~~gl~~~~ 99 (117)
T 4hyl_A 60 LRVLLSLYRHTSNQQGALVLVG--VSEEIRDTMEITGFWNFF 99 (117)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEC--CCHHHHHHHHHHTCGGGC
T ss_pred HHHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHhCcccee
Confidence 3456677777778888887763 334455666666666554
No 288
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=41.36 E-value=37 Score=22.24 Aligned_cols=44 Identities=2% Similarity=-0.015 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEE
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 59 (184)
....|.++.++++..|+.++.+.-+..+.+.+++++++++--.+
T Consensus 42 ~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~ 85 (151)
T 3raz_A 42 EMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIW 85 (151)
T ss_dssp HHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEE
T ss_pred HHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceE
Confidence 34556677766666667777666666777788888877664443
No 289
>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}
Probab=41.31 E-value=42 Score=22.93 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC--eEEE
Q psy17626 138 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT--KLCF 177 (184)
Q Consensus 138 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~--~v~~ 177 (184)
..++-+.|++.|.++.++.+.+...+..+++..++. .+|.
T Consensus 87 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~ 128 (219)
T 3kd3_A 87 IKELVQDLKNKGFEIWIFSGGLSESIQPFADYLNIPRENIFA 128 (219)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCCGGGEEE
T ss_pred HHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHcCCCcccEEE
Confidence 445556677889999999998888888899999984 3543
No 290
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=41.09 E-value=71 Score=22.88 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=26.7
Q ss_pred HHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe
Q psy17626 143 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174 (184)
Q Consensus 143 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 174 (184)
++|++.|+.+.+..|.+...+..++++.+++.
T Consensus 32 ~~l~~~g~~~~i~TGr~~~~~~~~~~~l~~~~ 63 (227)
T 1l6r_A 32 RSAEKKGLTVSLLSGNVIPVVYALKIFLGING 63 (227)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHHHHTCCS
T ss_pred HHHHHCCCEEEEECCCCcHHHHHHHHHhCCCC
Confidence 34566799999999999988889998888864
No 291
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=41.03 E-value=70 Score=22.43 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCC-eEEEEECChHHHHHHHHHHcCcc
Q psy17626 17 LECLADLDRQLKSHGG-QLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
...+.++.++++++|. .++.+.-+......+++++.++.
T Consensus 68 l~~f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~l~ 107 (176)
T 4f82_A 68 VPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTA 107 (176)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 3456777788888899 88888888888899999988876
No 292
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=40.97 E-value=84 Score=21.43 Aligned_cols=33 Identities=15% Similarity=-0.024 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc
Q psy17626 22 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 54 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 54 (184)
++-+.|++.|.++.++.+.....+..+.+..++
T Consensus 96 ~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~ 128 (225)
T 3d6j_A 96 PTLTHLKKQGIRIGIISTKYRFRILSFLRNHMP 128 (225)
T ss_dssp HHHHHHHHHTCEEEEECSSCHHHHHHHHHTSSC
T ss_pred HHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCc
Confidence 334445555677766666665556666655554
No 293
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3 PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Probab=40.97 E-value=82 Score=26.29 Aligned_cols=75 Identities=13% Similarity=0.211 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCCeEEEEE----C------ChHHHHHHHHHHcCcceEEEe-----ecccch-hHHHHHHHHHHHHhC
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQ----G------SPISIFQKLKRELNFTKLCFE-----QDCEAL-WHKRDKKVKKWCAEN 81 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~----g------~~~~~l~~l~~~~~~~~v~~~-----~~~~~~-~~~rd~~v~~~l~~~ 81 (184)
+.|.++-+..++.|..|+++= | +-...|.+++++.++..||.| +|..|. ...--+.+.+.+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~H~~gl~sdggvhsh~~hl~~l~~~a~~~g~~~v~~H~~~dGrD~~p~s~~~~~~~~~~~~~~~ 174 (511)
T 1o98_A 95 ETFLAAMNHVKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEY 174 (511)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECSSCCSSCCHHHHHHHHHHHHHTTCCCEEEEEEECSSSSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEeccCCCCccHHHHHHHHHHHHHHCCCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHh
Confidence 345666666677788888861 2 345667788888888878766 445554 334445667777665
Q ss_pred CC-eEEEecCce
Q psy17626 82 NI-TVKEFVSHT 92 (184)
Q Consensus 82 gi-~~~~~~~~~ 92 (184)
|+ ++-+..+++
T Consensus 175 ~~~~ias~~GR~ 186 (511)
T 1o98_A 175 GVGEIATLSGRY 186 (511)
T ss_dssp TCCEEEEEEEHH
T ss_pred CCEEEEEEeccc
Confidence 64 455555443
No 294
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=40.57 E-value=77 Score=22.86 Aligned_cols=70 Identities=10% Similarity=0.068 Sum_probs=43.2
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecc-----------cchhHHHHHHHHHHHHhCCCeEEEecCcee
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC-----------EALWHKRDKKVKKWCAENNITVKEFVSHTL 93 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-----------~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L 93 (184)
++|.+.|+.+.+..|.+...+..+.+..+.+.++..... .+.....-..+.+.+++.++.+..+....+
T Consensus 32 ~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~ 111 (274)
T 3fzq_A 32 RLCQKNHCSVVICTGRSMGTIQDDVLSLGVDGYIAGGGNYIQYHGELLYNQSFNQRLIKEVVCLLKKREVAFSIESQEKV 111 (274)
T ss_dssp HHHHHTTCEEEEECSSCTTTSCHHHHTTCCSEEEETTTTEEEETTEEEEECCCCHHHHHHHHHHHHHHTCEEEEECSSCE
T ss_pred HHHHHCCCEEEEEeCCChHHHHHHHHHcCCCEEEecCccEEEECCEEEEEcCCCHHHHHHHHHHHHHCCceEEEEeCCce
Confidence 345667999999999988877888877776643321100 011123334566667777888766655544
Q ss_pred e
Q psy17626 94 W 94 (184)
Q Consensus 94 ~ 94 (184)
+
T Consensus 112 ~ 112 (274)
T 3fzq_A 112 F 112 (274)
T ss_dssp E
T ss_pred E
Confidence 4
No 295
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=40.40 E-value=91 Score=23.34 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCeEEEEE-CChHHHHHHHHHHc--CcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 19 CLADLDRQLKSHGGQLFIVQ-GSPISIFQKLKREL--NFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~-g~~~~~l~~l~~~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
++.-|+..++..|.++.|-. |--..+|..|+.+. ++..|+.+..+.+.+ ..+.+++.+++.|++++.+.
T Consensus 42 a~~~l~~a~~~~g~~i~Va~SGkDS~vLL~Ll~~~~~~i~vv~iDtg~~~~e--t~~~v~~~~~~~gi~l~v~~ 113 (275)
T 2goy_A 42 PQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPE--TYRFIDQVREHYGIAIDVLS 113 (275)
T ss_dssp HHHHHHHHHHHHSTTEEEECCSSTTHHHHHHHHHHCTTCCEEEECCSCCCHH--HHHHHHHHHHHHTCCCEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEeecHHHHHHHHHHHHhCCCceEEEEeCCCCCHH--HHHHHHHHHHHHCCeEEEEe
Confidence 34455555666555544432 76667888888775 566777776665332 33456666677788877543
No 296
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=39.90 E-value=60 Score=24.48 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCeEEEEECChH----HHHHHHHHHcCcc-----eEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPI----SIFQKLKRELNFT-----KLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~----~~l~~l~~~~~~~-----~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
...+|-+.|+++|+++.|+.|.+. +.....++..++. +|++..+ .++-. ..++.+.+.|..+..+-
T Consensus 105 G~~ell~~L~~~G~ki~ivTgR~~~~~r~~T~~~L~~lGi~~~~~~~Lilr~~-~~~K~----~~r~~l~~~Gy~iv~~v 179 (262)
T 3ocu_A 105 GAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTIDDMKRLGFNGVEESAFYLKKD-KSAKA----ARFAEIEKQGYEIVLYV 179 (262)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEETTTTHHHHHHHHHHHTCSCCSGGGEEEESS-CSCCH----HHHHHHHHTTEEEEEEE
T ss_pred cHHHHHHHHHHCCCeEEEEeCCCccchHHHHHHHHHHcCcCcccccceeccCC-CCChH----HHHHHHHhcCCCEEEEE
Confidence 456677888999999999988754 4667777788886 5776543 22211 23333444566666665
Q ss_pred Cceeecccc
Q psy17626 90 SHTLWDPEV 98 (184)
Q Consensus 90 ~~~L~~p~~ 98 (184)
+..+.|...
T Consensus 180 GD~~~Dl~~ 188 (262)
T 3ocu_A 180 GDNLDDFGN 188 (262)
T ss_dssp ESSGGGGCS
T ss_pred CCChHHhcc
Confidence 555555543
No 297
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=39.60 E-value=86 Score=23.39 Aligned_cols=12 Identities=0% Similarity=-0.017 Sum_probs=5.6
Q ss_pred hHHHHHHHHHcC
Q psy17626 160 ISIFQKLKRELN 171 (184)
Q Consensus 160 ~~~l~~l~~~~~ 171 (184)
.+.+.++++..+
T Consensus 162 ~~~~~~li~~v~ 173 (303)
T 3aal_A 162 FEELAYIIDGVA 173 (303)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhcC
Confidence 334444555544
No 298
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=39.52 E-value=1.3e+02 Score=23.10 Aligned_cols=71 Identities=21% Similarity=0.205 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHhc-------CCeEEEEECChHHHHHHHHHHcCcceEEEe---ecccchhHHHHHHHHHHHHhCCC
Q psy17626 14 RFLLECLADLDRQLKSH-------GGQLFIVQGSPISIFQKLKRELNFTKLCFE---QDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~-------g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~---~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
.=+.+.|.+|++++++. +..+++.+. .+.-|++.+|.+.++.. .+-+| .-++-..+.+.+++.+|
T Consensus 166 ~~~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H~----af~Yfa~~yGl~~~~~~~i~~~~eP-s~~~l~~l~~~ik~~~v 240 (307)
T 3ujp_A 166 AVYSEQLKAIDRQLGADLEQVPANQRFLVSCEG----AFSYLARDYGMEEIYMWPINAEQQF-TPKQVQTVIEEVKTNNV 240 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCGGGCEEEEEES----TTHHHHHHTTCEEEEEESSCCSSCC-CHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCEEEEECc----hHHHHHHHCCCcEEEeeccCCCCCC-CHHHHHHHHHHHHhcCC
Confidence 34566677777776542 233444433 57789999999977553 22333 33444577788888999
Q ss_pred eEEEec
Q psy17626 84 TVKEFV 89 (184)
Q Consensus 84 ~~~~~~ 89 (184)
++..++
T Consensus 241 ~~If~e 246 (307)
T 3ujp_A 241 PTIFCE 246 (307)
T ss_dssp SEEEEE
T ss_pred cEEEEe
Confidence 887654
No 299
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=39.42 E-value=29 Score=22.53 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcce
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 56 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 56 (184)
..|..+.+.+++.|++|.+.. +...+.++.+..+.+.
T Consensus 71 ~~L~~~~~~~~~~g~~l~l~~--~~~~v~~~l~~~gl~~ 107 (125)
T 2ka5_A 71 GVIVNILKSISSSGGFFALVS--PNEKVERVLSLTNLDR 107 (125)
T ss_dssp HHHHHHHHHHHHHTCEEEEEC--CCHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHHcCCCc
Confidence 344455555555566665552 2233444445444443
No 300
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10
Probab=39.37 E-value=1.1e+02 Score=22.47 Aligned_cols=70 Identities=14% Similarity=0.248 Sum_probs=43.7
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcCcce-EEEeec---cc---------chhHHHHHHHHHHHHhCCCeEEEecCc
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTK-LCFEQD---CE---------ALWHKRDKKVKKWCAENNITVKEFVSH 91 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~-v~~~~~---~~---------~~~~~rd~~v~~~l~~~gi~~~~~~~~ 91 (184)
+.|++.|+.+.+..|.+...+..+++..+.+. +.+... +. +.....-..+.+.+++.|+.+..+.+.
T Consensus 31 ~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 110 (288)
T 1nrw_A 31 RQAQRDGIEVVVSTGRAHFDVMSIFEPLGIKTWVISANGAVIHDPEGRLYHHETIDKKRAYDILSWLESENYYYEVFTGS 110 (288)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHGGGTCCCEEEEGGGTEEECTTCCEEEECCCCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCcEEEcCCeEEEcCCCcEEEEeeCCHHHHHHHHHHHHHCCcEEEEEeCC
Confidence 34566799999999999988888888877653 211110 00 111223345566777889887776554
Q ss_pred eee
Q psy17626 92 TLW 94 (184)
Q Consensus 92 ~L~ 94 (184)
..+
T Consensus 111 ~~~ 113 (288)
T 1nrw_A 111 AIY 113 (288)
T ss_dssp CEE
T ss_pred EEE
Confidence 443
No 301
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=39.30 E-value=51 Score=25.61 Aligned_cols=41 Identities=5% Similarity=-0.136 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEE
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 177 (184)
.+..+.+-|+.+|++.+...|++++.+..++++-.+..|++
T Consensus 130 ~~~~~~~lL~~~gi~~i~apgeAEA~lA~la~~g~~~~I~S 170 (336)
T 1rxw_A 130 IVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGS 170 (336)
T ss_dssp HHHHHHHHHHHTTCCEEECSSCHHHHHHHHHHTTSSSEEEC
T ss_pred HHHHHHHHHHhCCCCEEEcCchHHHHHHHHHHcCCeeEEEc
Confidence 57778888999999999999998888988885433455543
No 302
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=39.21 E-value=41 Score=22.06 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
...|..+.+.+++.|+.|.+..-++ .+.++.+..+..
T Consensus 70 l~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~ 106 (135)
T 4dgf_A 70 MHALWEFQESCEKRGTILLLSGVSD--RLYGALNRFGFI 106 (135)
T ss_dssp HHHHHHHHHHHHHHTCEEEEESCCH--HHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHcCCh
Confidence 4567788888888899988874332 333444444443
No 303
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=38.74 E-value=41 Score=23.20 Aligned_cols=35 Identities=9% Similarity=0.197 Sum_probs=24.2
Q ss_pred HHHHHHHHhCCCeEEEEeCChh---HHHHHHHHHcCcC
Q psy17626 139 ADLDRQLKSHGGQLFIVQGSPI---SIFQKLKRELNFT 173 (184)
Q Consensus 139 ~~L~~~L~~~g~~L~v~~g~~~---~~l~~l~~~~~~~ 173 (184)
.++=+.|++.|+++.++.+.+. ..+..+.+..|+.
T Consensus 40 ~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~ 77 (189)
T 3ib6_A 40 KETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGII 77 (189)
T ss_dssp HHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCch
Confidence 3344456667888888886654 6677777888764
No 304
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.48 E-value=8.7 Score=21.25 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=11.9
Q ss_pred HHHHHHHHhCCCeEE
Q psy17626 139 ADLDRQLKSHGGQLF 153 (184)
Q Consensus 139 ~~L~~~L~~~g~~L~ 153 (184)
.+|+.+|+++|.|+.
T Consensus 14 ~ELQaKLaE~GAPi~ 28 (58)
T 2do5_A 14 QELQAKLAEIGAPIQ 28 (58)
T ss_dssp HHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHhCCccc
Confidence 468888999888864
No 305
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0
Probab=38.34 E-value=49 Score=23.77 Aligned_cols=62 Identities=11% Similarity=-0.032 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCeEEEEECChHHHHHHHHHHcC-----cceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 21 ADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN-----FTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~-----~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
.++-+.|++.|.++.++.+.+...+..+.+..+ ++.++...+.. ...---..+...++..|+
T Consensus 117 ~~~l~~l~~~g~~~~i~tn~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~kp~~~~~~~~~~~lgi 183 (277)
T 3iru_A 117 KEVFDKLIAQGIKVGGNTGYGPGMMAPALIAAKEQGYTPASTVFATDVV-RGRPFPDMALKVALELEV 183 (277)
T ss_dssp HHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHTTCCCSEEECGGGSS-SCTTSSHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCeEEEEeCCchHHHHHHHHhcCcccCCCceEecHHhcC-CCCCCHHHHHHHHHHcCC
Confidence 345566777788888888777666666555433 34444443322 112112344555555555
No 306
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=38.22 E-value=1.1e+02 Score=22.11 Aligned_cols=160 Identities=9% Similarity=-0.054 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC----ChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG----SPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g----~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
.|..+-+..+++.++++|..+.+... ++.. .+..+. ..+++.|+...... .. ....++ .+.+.|+++.
T Consensus 20 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~-~~--~~~~~~-~~~~~~iPvV 94 (289)
T 3brs_A 20 DFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAI-KRKPDVILLAAADY-EK--TYDAAK-EIKDAGIKLI 94 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHH-HTCCSEEEECCSCT-TT--THHHHT-TTGGGTCEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH-HhCCCEEEEeCCCh-HH--hHHHHH-HHHHCCCcEE
Confidence 47777888888899999999888643 4432 344444 46889888754221 11 111222 3345689998
Q ss_pred EecCceeec--ccccccccCCCCchhHHHHHHHhhhcc-cccc----CcchhHHHHHHHHHHHHHHHhCCCeEE-EEeCC
Q psy17626 87 EFVSHTLWD--PEVVIQTNGNVPPLTYKMYLHTVSCIG-TMHI----GYNRFRFLLECLADLDRQLKSHGGQLF-IVQGS 158 (184)
Q Consensus 87 ~~~~~~L~~--p~~i~~~~~~~~~~v~~~F~~~~~~~~-~~~~----~~~r~~fl~~~L~~L~~~L~~~g~~L~-v~~g~ 158 (184)
.++...--+ ...+..++ .-..+..-......++ ..+. +........+.+.-..+.+++.|..+. +..++
T Consensus 95 ~~~~~~~~~~~~~~V~~D~---~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~ 171 (289)
T 3brs_A 95 VIDSGMKQDIADITVATDN---IQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAIYYCD 171 (289)
T ss_dssp EESSCCSSCCCSEEEECCH---HHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEEEEECT
T ss_pred EECCCCCCCcceEEEeeCh---HHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEeeecCC
Confidence 876532110 01111111 0001111111111122 1111 222223445667778888888886532 23332
Q ss_pred --h---hHHHHHHHHHc-CcCeEEEcccc
Q psy17626 159 --P---ISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 159 --~---~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
. .+.+.++.++. .++.||+..|.
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~ 200 (289)
T 3brs_A 172 SNYDKAYDGTVELLTKYPDISVMVGLNQY 200 (289)
T ss_dssp TCHHHHHHHHHHHHHHCTTEEEEEESSHH
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEECCCc
Confidence 2 23556666654 58999987653
No 307
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=38.06 E-value=73 Score=22.91 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCC-eEEEEECChHHHHHHHHHHcCcc
Q psy17626 17 LECLADLDRQLKSHGG-QLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
+..|.++.+++++.|. .++.+..+..+...+++++++..
T Consensus 54 ~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 93 (241)
T 1nm3_A 54 LPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSE 93 (241)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCC
Confidence 4568888888998999 88888888888899999998875
No 308
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=37.96 E-value=1.2e+02 Score=22.24 Aligned_cols=73 Identities=7% Similarity=-0.055 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC-ChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG-SPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g-~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|..+-+..+.+.++++|..+.+... ++.. .+..+.. .+++.|+....-. . ... ...+.+.+.||++..++
T Consensus 15 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~-~--~~~-~~~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 15 PWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAA-SGAKGFVICTPDP-K--LGS-AIVAKARGYDMKVIAVD 89 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHH-TTCCEEEEECSCG-G--GHH-HHHHHHHHTTCEEEEES
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCc-h--hhH-HHHHHHHHCCCcEEEeC
Confidence 47778888899999999999887765 3332 2444443 5789888764211 1 112 22334566799999887
Q ss_pred Cc
Q psy17626 90 SH 91 (184)
Q Consensus 90 ~~ 91 (184)
..
T Consensus 90 ~~ 91 (306)
T 8abp_A 90 DQ 91 (306)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 309
>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}
Probab=37.86 E-value=64 Score=23.56 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=13.6
Q ss_pred HHHHhc-CCeEEEEECChHHHHHHHHHHcC
Q psy17626 25 RQLKSH-GGQLFIVQGSPISIFQKLKRELN 53 (184)
Q Consensus 25 ~~L~~~-g~~L~v~~g~~~~~l~~l~~~~~ 53 (184)
+.|++. |.++.+..+.....+..+.+..+
T Consensus 124 ~~l~~~~g~~l~i~T~~~~~~~~~~l~~~~ 153 (275)
T 2qlt_A 124 NALNALPKEKWAVATSGTRDMAKKWFDILK 153 (275)
T ss_dssp HHHHTSCGGGEEEECSSCHHHHHHHHHHHT
T ss_pred HHHHhccCCeEEEEeCCCHHHHHHHHHHcC
Confidence 344444 55555555544444444444433
No 310
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=37.80 E-value=59 Score=25.61 Aligned_cols=42 Identities=7% Similarity=0.017 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEE
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 177 (184)
+-...+.+-|+.+|++.++...++.+.+..|+++-.+..|++
T Consensus 128 ~~~~~i~~~L~~~gIp~i~ap~EADaqiA~La~~g~~~~I~S 169 (352)
T 3qe9_Y 128 AMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIIT 169 (352)
T ss_dssp HHHHHHHHHHHHTTCEEEECSSCHHHHHHHHHHTTSCSEEEC
T ss_pred HHHHHHHHHHHHcCCcEEECCcchHHHHHHHHHCCCeEEEEe
Confidence 445667777888999999988899999999988655555554
No 311
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=37.63 E-value=63 Score=22.31 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHc
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 170 (184)
..|.++.+++.+.|..++.+.-+..+.+.++++++
T Consensus 51 ~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~ 85 (186)
T 1n8j_A 51 GDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSS 85 (186)
T ss_dssp HHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc
Confidence 45777777888788888877777777788888887
No 312
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Probab=37.47 E-value=55 Score=22.24 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEc
Q psy17626 139 ADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 139 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n 178 (184)
.++-+.|.+.|+++.+..|.+......+.+..+++.++.+
T Consensus 82 ~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~~~~~~~~~ 121 (211)
T 1l7m_A 82 EETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFAN 121 (211)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCeEEEe
Confidence 3444456667999999988877766777788888876644
No 313
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=37.37 E-value=1.2e+02 Score=22.25 Aligned_cols=69 Identities=6% Similarity=0.072 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCeEEEE-EC-ChHHHHHHHHHHc--CcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 19 CLADLDRQLKSHGGQLFIV-QG-SPISIFQKLKREL--NFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~-~g-~~~~~l~~l~~~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
++.-|+..++..|.++.|- .| --..++..++.+. ++..|+.+..+.+. +..+.+++.+++.||+++.+.
T Consensus 33 ~~~~l~~a~~~~~~~v~va~SGG~DS~vLL~ll~~~~~~v~vv~idtg~~~~--et~~~~~~~~~~~gi~~~v~~ 105 (252)
T 2o8v_A 33 AEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFP--ETYRFIDELTDKLKLNLKVYR 105 (252)
T ss_dssp HHHHHHHHHTTSCSCEEEECCCSTTHHHHHHHHHHHSTTCEEEECCCSCBCH--HHHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCH--HHHHHHHHHHHHhCCceEEEc
Confidence 3445666666667565554 44 3445677777765 56667776655433 334567777788899988654
No 314
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=37.20 E-value=47 Score=26.18 Aligned_cols=40 Identities=8% Similarity=0.025 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEE
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 59 (184)
...+.+-|+.+|++.++.-+++.+.+..|++.-.++.|+.
T Consensus 130 ~~~i~~~L~~~gIp~i~ap~EADaqiA~La~~g~~~~I~S 169 (352)
T 3qe9_Y 130 AHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIIT 169 (352)
T ss_dssp HHHHHHHHHHTTCEEEECSSCHHHHHHHHHHTTSCSEEEC
T ss_pred HHHHHHHHHHcCCcEEECCcchHHHHHHHHHCCCeEEEEe
Confidence 4567777888899988887888888988888644455543
No 315
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=37.15 E-value=1.2e+02 Score=22.02 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=45.7
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcCcc----eEEEeecc-------------cchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFT----KLCFEQDC-------------EALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~----~v~~~~~~-------------~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
++|.+.|+.+.+..|.+...+..+.+..+.+ -++..... .+.....-..+.+.+++.++.+..
T Consensus 32 ~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~i~~nGa~i~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~ 111 (279)
T 4dw8_A 32 IRIQEQGIRLVLASGRPTYGIVPLANELRMNEFGGFILSYNGGEIINWESKEMMYENVLPNEVVPVLYECARTNHLSILT 111 (279)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHHHTTGGGTTCEEEEGGGTEEEETTTCCEEEECCCCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHHHCCCEEEEEcCCChHHHHHHHHHhCCCCCCCEEEEeCCeEEEECCCCeEEEEecCCHHHHHHHHHHHHHcCCEEEE
Confidence 3456679999999999999899998888762 22221100 011223345666777888998877
Q ss_pred ecCceeec
Q psy17626 88 FVSHTLWD 95 (184)
Q Consensus 88 ~~~~~L~~ 95 (184)
+.+..++-
T Consensus 112 ~~~~~~~~ 119 (279)
T 4dw8_A 112 YDGAEIVT 119 (279)
T ss_dssp EETTEEEE
T ss_pred EECCEEEE
Confidence 76665554
No 316
>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*
Probab=37.08 E-value=90 Score=22.67 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCC--eEEEEECChHHHHHHHHHHcCc
Q psy17626 19 CLADLDRQLKSHGG--QLFIVQGSPISIFQKLKRELNF 54 (184)
Q Consensus 19 sL~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~~~~ 54 (184)
.+.++-+.|++.|. ++.|+.+.....+..+.+..++
T Consensus 146 ~~~~~L~~L~~~g~~~~l~i~Tn~~~~~~~~~l~~~gl 183 (282)
T 3nuq_A 146 PLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGI 183 (282)
T ss_dssp HHHHHHHHHHHSSSCSEEEEECSSCHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHhCCCCceEEEEECCChHHHHHHHHhCCc
Confidence 44455556666676 7777666665555555555544
No 317
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=37.02 E-value=67 Score=21.90 Aligned_cols=37 Identities=8% Similarity=-0.002 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCCe-EEEEeCChhHHHHHHHHHcCc
Q psy17626 136 ECLADLDRQLKSHGGQ-LFIVQGSPISIFQKLKRELNF 172 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~ 172 (184)
..|.++.+++++.|.. ++.+.-+......++++++++
T Consensus 65 p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~ 102 (171)
T 2pwj_A 65 PPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQA 102 (171)
T ss_dssp HHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCC
Confidence 3566777788888998 888876666778889999886
No 318
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=36.63 E-value=86 Score=22.68 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEC-------Ch---------HHHHHHHHHHcCcceEEEeec
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQG-------SP---------ISIFQKLKRELNFTKLCFEQD 62 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g-------~~---------~~~l~~l~~~~~~~~v~~~~~ 62 (184)
-..+.++++.|++.|+.+..... ++ .....+++++.++..|.++-.
T Consensus 44 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~g 105 (275)
T 3qc0_A 44 AIGLGEAGRIVRANGLKLTGLCRGGFFPAPDASGREKAIDDNRRAVDEAAELGADCLVLVAG 105 (275)
T ss_dssp HHCHHHHHHHHHHHTCEESCEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTTCSCEEEECB
T ss_pred ccCHHHHHHHHHHcCCceEEeecCCCcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeC
Confidence 45678899999999988754431 22 123455667789998888754
No 319
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=36.60 E-value=1.4e+02 Score=22.57 Aligned_cols=71 Identities=11% Similarity=0.181 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhc-----CCeEEEEECChHHHHHHHHHHcCcceEEEee---cccchhHHHHHHHHHHHHhCCCeE
Q psy17626 14 RFLLECLADLDRQLKSH-----GGQLFIVQGSPISIFQKLKRELNFTKLCFEQ---DCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~-----g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~---~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
.=+...|.+|++++++. +..+++.+ ..+.-|++.+|++.+.... +-+| .-++-..+.+.+++.+|++
T Consensus 157 ~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~ep-s~~~l~~l~~~ik~~~v~~ 231 (286)
T 3gi1_A 157 KAFKKEAEQLTEEYTQKFKKVRSKTFVTQH----TAFSYLAKRFGLKQLGISGISPEQEP-SPRQLKEIQDFVKEYNVKT 231 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCCEEEEEE----SCCHHHHHHTTCEEEEEECSCC---C-CHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEEC----CchHHHHHHCCCeEeeccccCCCCCC-CHHHHHHHHHHHHHcCCCE
Confidence 33556677777666543 44455543 2566888888888765432 1122 2344456777778888887
Q ss_pred EEec
Q psy17626 86 KEFV 89 (184)
Q Consensus 86 ~~~~ 89 (184)
..++
T Consensus 232 if~e 235 (286)
T 3gi1_A 232 IFAE 235 (286)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7544
No 320
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=36.54 E-value=61 Score=20.54 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCcceEEEee-----cccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 43 SIFQKLKRELNFTKLCFEQ-----DCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 43 ~~l~~l~~~~~~~~v~~~~-----~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
+.+.++++...+ |.+.+ ..+|+.. +++++|++.||++.
T Consensus 7 ~~v~~~i~~~~V--vlf~kg~~~~~~Cp~C~----~ak~~L~~~gi~y~ 49 (111)
T 3zyw_A 7 LRLKKLTHAAPC--MLFMKGTPQEPRCGFSK----QMVEILHKHNIQFS 49 (111)
T ss_dssp HHHHHHHTSSSE--EEEESBCSSSBSSHHHH----HHHHHHHHTTCCCE
T ss_pred HHHHHHHhcCCE--EEEEecCCCCCcchhHH----HHHHHHHHcCCCeE
Confidence 344455554433 44444 4444433 23445555566544
No 321
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=36.47 E-value=1e+02 Score=23.19 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCeEEEEECChH----HHHHHHHHHcCcce-----EEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPI----SIFQKLKRELNFTK-----LCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~----~~l~~l~~~~~~~~-----v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
...++-+.|++.|+++.|+.|.+. +.....+++.++.. |++-.+ .++- ...++.+.+.|..+..+-
T Consensus 105 g~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~~~L~~lGi~~~~~~~Lilr~~-~~~K----~~~r~~L~~~gy~iv~~i 179 (260)
T 3pct_A 105 GAVEFSNYVNANGGTMFFVSNRRDDVEKAGTVDDMKRLGFTGVNDKTLLLKKD-KSNK----SVRFKQVEDMGYDIVLFV 179 (260)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHHHHHTCCCCSTTTEEEESS-CSSS----HHHHHHHHTTTCEEEEEE
T ss_pred cHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCcCccccceeEecCC-CCCh----HHHHHHHHhcCCCEEEEE
Confidence 455677888999999999988764 46777777888874 666543 2221 223333444466666665
Q ss_pred Cceeecccc
Q psy17626 90 SHTLWDPEV 98 (184)
Q Consensus 90 ~~~L~~p~~ 98 (184)
+..+.|...
T Consensus 180 GD~~~Dl~~ 188 (260)
T 3pct_A 180 GDNLNDFGD 188 (260)
T ss_dssp ESSGGGGCG
T ss_pred CCChHHcCc
Confidence 555555443
No 322
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=36.44 E-value=46 Score=24.95 Aligned_cols=56 Identities=5% Similarity=-0.119 Sum_probs=35.5
Q ss_pred CeEEEEECChHHHHHHHHHHcCcceEEEeecc-cchhHH-HHHHHHHHHHhCCCeEEEec
Q psy17626 32 GQLFIVQGSPISIFQKLKRELNFTKLCFEQDC-EALWHK-RDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 32 ~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~~-rd~~v~~~l~~~gi~~~~~~ 89 (184)
....+..|++.+.|.+.++ +++-|++-..- +...+- .-...++.+....+++..+.
T Consensus 248 ~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~~pVlvv~ 305 (309)
T 3cis_A 248 ITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVAR 305 (309)
T ss_dssp EEEEEESSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHCSSCEEEEC
T ss_pred EEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcCCCCEEEeC
Confidence 4566788999999999998 89988886431 111111 11233445566677776543
No 323
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=36.22 E-value=1.1e+02 Score=21.20 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc----ceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 21 ADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
.++-+.|+ .|.++.++.+.+...+..+.+..++ +.++...+... .+.--..++..++..|+
T Consensus 113 ~~~l~~l~-~g~~~~i~sn~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~-~kp~~~~~~~~~~~lgi 177 (240)
T 3qnm_A 113 KEVLEYLA-PQYNLYILSNGFRELQSRKMRSAGVDRYFKKIILSEDLGV-LKPRPEIFHFALSATQS 177 (240)
T ss_dssp HHHHHHHT-TTSEEEEEECSCHHHHHHHHHHHTCGGGCSEEEEGGGTTC-CTTSHHHHHHHHHHTTC
T ss_pred HHHHHHHH-cCCeEEEEeCCchHHHHHHHHHcChHhhceeEEEeccCCC-CCCCHHHHHHHHHHcCC
Confidence 44555666 6889999988877777777776654 45555544332 22223456667777776
No 324
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=36.13 E-value=1.4e+02 Score=22.78 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhc-------CCeEEEEECChHHHHHHHHHHcCcceEEEee---cccchhHHHHHHHHHHHHhCCC
Q psy17626 14 RFLLECLADLDRQLKSH-------GGQLFIVQGSPISIFQKLKRELNFTKLCFEQ---DCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~-------g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~---~~~~~~~~rd~~v~~~l~~~gi 83 (184)
.=+.+.|.+|++++++. +..+++.+. .+.-|++.+|.+.+.... +-+| .-++-..+.+.+++.+|
T Consensus 173 ~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~----af~Yfa~~yGl~~~~~~~~~~~~ep-s~~~l~~l~~~ik~~~v 247 (313)
T 1toa_A 173 QAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHD----AFGYFSRAYGFEVKGLQGVSTASEA-SAHDMQELAAFIAQRKL 247 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCGGGCEEEEEES----CCHHHHHHHTCEEEEEECSSCSSCC-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccCCEEEEECC----cHHHHHHHCCCeEEEeeccCCCCCC-CHHHHHHHHHHHHHcCC
Confidence 33555677776655432 344555433 466888899998766532 2233 33444567777788888
Q ss_pred eEEEec
Q psy17626 84 TVKEFV 89 (184)
Q Consensus 84 ~~~~~~ 89 (184)
++..++
T Consensus 248 ~~If~e 253 (313)
T 1toa_A 248 PAIFIE 253 (313)
T ss_dssp SEEEEE
T ss_pred CEEEEe
Confidence 877544
No 325
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=35.80 E-value=86 Score=23.74 Aligned_cols=43 Identities=9% Similarity=0.014 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEe-CChhHHHHHHHHHcCcCeEEEc
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQ-GSPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~-g~~~~~l~~l~~~~~~~~v~~n 178 (184)
+.|.+|.+.+++.|++.++.+ .-+......++++.|+..++.+
T Consensus 224 ~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~ld 267 (291)
T 1pq4_A 224 QELKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAGVELLD 267 (291)
T ss_dssp HHHHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEEc
Confidence 678888889999999987776 3445667778889998887754
No 326
>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*
Probab=35.54 E-value=44 Score=25.96 Aligned_cols=44 Identities=9% Similarity=0.220 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHH----cCc--CeEEE
Q psy17626 134 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE----LNF--TKLCF 177 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~----~~~--~~v~~ 177 (184)
+.....+|-+.|++.|+...|+++.+..++.-+++. ||| ++|+-
T Consensus 144 ~~~~~~~l~~~l~~~G~~v~ivSas~~~~v~~~a~~~~~~ygIp~e~ViG 193 (327)
T 4as2_A 144 VFSGQRELYNKLMENGIEVYVISAAHEELVRMVAADPRYGYNAKPENVIG 193 (327)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHTCGGGSCCCCGGGEEE
T ss_pred cCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhhcccccCCCHHHeEe
Confidence 345567888999999999999999999999999886 666 45553
No 327
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=35.33 E-value=37 Score=21.18 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=7.1
Q ss_pred HHHHHHHHHhcCCeEEE
Q psy17626 20 LADLDRQLKSHGGQLFI 36 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v 36 (184)
|..+.+.+++.|+.+.+
T Consensus 64 L~~~~~~~~~~g~~l~l 80 (116)
T 1th8_B 64 ILGRYKQIKNVGGQMVV 80 (116)
T ss_dssp HHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhCCeEEE
Confidence 33344444444444433
No 328
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=35.18 E-value=1.4e+02 Score=22.22 Aligned_cols=73 Identities=5% Similarity=-0.047 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhc-----CCe--EEEEECChHHHHHHHHHHcCcceEEEeeccc-chhHH-HHHHHHHHHHhCCCeEEE
Q psy17626 17 LECLADLDRQLKSH-----GGQ--LFIVQGSPISIFQKLKRELNFTKLCFEQDCE-ALWHK-RDKKVKKWCAENNITVKE 87 (184)
Q Consensus 17 ~~sL~~L~~~L~~~-----g~~--L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~-~~~~~-rd~~v~~~l~~~gi~~~~ 87 (184)
.+.|.++.+.+++. |++ ..+..|++.+.|.+.++ +++-|++-..-. ...+. .-....+.+...++++..
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlv 158 (309)
T 3cis_A 81 RHLIDDALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVI 158 (309)
T ss_dssp HHHHHHHHHHHHHHCSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHHhcccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEE
Confidence 34456666666654 655 45678999999999987 789888875421 11111 122344556677899887
Q ss_pred ecCc
Q psy17626 88 FVSH 91 (184)
Q Consensus 88 ~~~~ 91 (184)
+...
T Consensus 159 v~~~ 162 (309)
T 3cis_A 159 IHDE 162 (309)
T ss_dssp ECTT
T ss_pred EcCC
Confidence 7654
No 329
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=35.16 E-value=58 Score=21.40 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
..|..+.+.+++.|+.|.+..-+ ..+.++.+..++.
T Consensus 83 ~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~gl~ 118 (143)
T 3llo_A 83 KTLAGIVKEYGDVGIYVYLAGCS--AQVVNDLTSNRFF 118 (143)
T ss_dssp HHHHHHHHHHHTTTCEEEEESCC--HHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHhCCCe
Confidence 45566666666666666665222 2233444444444
No 330
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=35.13 E-value=73 Score=24.42 Aligned_cols=51 Identities=12% Similarity=0.030 Sum_probs=38.1
Q ss_pred hHHHHHH-HHHHHHHHHh--CCCeEEEEeC-ChhHHHHHHHHHc---CcCeEEEcccc
Q psy17626 131 FRFLLEC-LADLDRQLKS--HGGQLFIVQG-SPISIFQKLKREL---NFTKLCFEQDC 181 (184)
Q Consensus 131 ~~fl~~~-L~~L~~~L~~--~g~~L~v~~g-~~~~~l~~l~~~~---~~~~v~~n~~~ 181 (184)
+.-+... +..+.+-|+. .|++.+...| ++.+++..|+++. |...+....|.
T Consensus 96 ~e~L~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~G~~v~IvS~Dk 153 (290)
T 1exn_A 96 EKALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDG 153 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEECSCG
T ss_pred chhHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3445566 7788888998 9999998888 9999999888764 55555555444
No 331
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=35.12 E-value=61 Score=25.17 Aligned_cols=44 Identities=9% Similarity=-0.076 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecc
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~ 63 (184)
.+..+++-|+.+|++.++.-|+++..+..+++.--+..| .+.|.
T Consensus 130 ~~~~~~~lL~~~gi~~i~apgeAEA~lA~la~~g~~~~I-~S~D~ 173 (336)
T 1rxw_A 130 IVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYT-GSQDY 173 (336)
T ss_dssp HHHHHHHHHHHTTCCEEECSSCHHHHHHHHHHTTSSSEE-ECSSS
T ss_pred HHHHHHHHHHhCCCCEEEcCchHHHHHHHHHHcCCeeEE-EcCCC
Confidence 466788888999999999999988889888854334444 44443
No 332
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=35.04 E-value=1e+02 Score=20.81 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhCCCeEE---EEeCChhHHHHHHHHHcC--cCeEEEcc
Q psy17626 135 LECLADLDRQLKSHGGQLF---IVQGSPISIFQKLKRELN--FTKLCFEQ 179 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~---v~~g~~~~~l~~l~~~~~--~~~v~~n~ 179 (184)
.+.|..--..|++.|++-. +..++|...|.....+++ ++.|+.-.
T Consensus 57 ~~~l~~sl~aL~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T 106 (138)
T 2iel_A 57 EEEAAAAKRALEAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLST 106 (138)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEE
T ss_pred HHHHHHHHHHHHHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEc
Confidence 3445555556677788755 778999999999999999 99887653
No 333
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}
Probab=34.92 E-value=38 Score=23.87 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc------ceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF------TKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~------~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+.++-+.|++.|.++.++.+.+...+....+. ++ +.++...+... .+---..+...+++.|+
T Consensus 113 ~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~-~l~~~f~~~~~~~~~~~~~-~kp~~~~~~~~~~~lg~ 180 (247)
T 3dv9_A 113 ALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNH-NFPGIFQANLMVTAFDVKY-GKPNPEPYLMALKKGGF 180 (247)
T ss_dssp HHHHHHHHHHTTCEEEEECSCC---CHHHHHH-HSTTTCCGGGEECGGGCSS-CTTSSHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCcEEEEcCCchHHHHHHHHh-hHHHhcCCCeEEecccCCC-CCCCCHHHHHHHHHcCC
Confidence 44555667777888888887665554444444 43 33444443321 11112344555555565
No 334
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=34.91 E-value=1.3e+02 Score=21.81 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=7.1
Q ss_pred HHHHHHHHHhcCCeE
Q psy17626 20 LADLDRQLKSHGGQL 34 (184)
Q Consensus 20 L~~L~~~L~~~g~~L 34 (184)
+.++++.|++.|+.+
T Consensus 53 ~~~~~~~l~~~gl~i 67 (264)
T 1yx1_A 53 TEALTAAIQLQGLEC 67 (264)
T ss_dssp HHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCEE
Confidence 344444555555443
No 335
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=34.91 E-value=1.2e+02 Score=21.43 Aligned_cols=69 Identities=9% Similarity=-0.072 Sum_probs=49.5
Q ss_pred hcCCeEEEEECChHHHHHHHHHHc--C-cceEEEeec-ccchhHHHHHHHHHHHHhCCCeEEEecCceeeccccccc
Q psy17626 29 SHGGQLFIVQGSPISIFQKLKREL--N-FTKLCFEQD-CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQ 101 (184)
Q Consensus 29 ~~g~~L~v~~g~~~~~l~~l~~~~--~-~~~v~~~~~-~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~ 101 (184)
++|..+.++..+.+..|-+.+.+. + .+.|+.|.. |+.+.. .++.++...++++..++-..++..+.++.
T Consensus 51 ~~g~~l~~~QSN~EGeLId~Ih~a~~~~~dgIIINpgAyTHtSv----AlrDAl~~v~~P~VEVHiSNi~aRE~FRh 123 (176)
T 2c4w_A 51 NLDVELEFFQTNFEGEIIDKIQESVGSEYEGIIINPGAFSHTSI----AIADAIMLAGKPVIEVHLTNIQAREEFRK 123 (176)
T ss_dssp TCCEEEEEEECSCHHHHHHHHHHHHSSSCCEEEEECGGGGGTCH----HHHHHHHTSSSCEEEEESSCGGGSCGGGT
T ss_pred cCCCEEEEEeeCcHHHHHHHHHHhccCCeeEEEECcchhccchH----HHHHHHHhCCCCEEEEEecCccccccccc
Confidence 568899999998887666665543 3 778999853 444444 34555566789999999888888777654
No 336
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=34.77 E-value=89 Score=23.52 Aligned_cols=54 Identities=7% Similarity=0.090 Sum_probs=39.5
Q ss_pred eEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 33 QLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 33 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
+..+..| ...+..+++.-.+.-|+..+|.+|.+... .+-.+|++.||++..+.+
T Consensus 125 p~~lk~G--vneVTklVE~kKAqLVVIA~DVdPiElV~--fLPaLC~k~gVPY~iVk~ 178 (258)
T 3iz5_H 125 PIVVKYG--LNHVTYLIEQSKAQLVVIAHDVDPIELVV--WLPALCRKMEVPYCIVKG 178 (258)
T ss_dssp CCCEEES--HHHHHHHHHTTCEEEEEEESCCSSTHHHH--HHHHHHTTTTCCEEEESC
T ss_pred Cceeecc--cHHHHHHHHcCcceEEEEeCCCChHHHHh--HHHHHHHhcCCCeEEECC
Confidence 4555555 45566788888888888888888875544 467778888998877665
No 337
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A
Probab=34.66 E-value=44 Score=23.68 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc------ceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF------TKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~------~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
+.++-+.|++.|.++.++.+.+...+....+. ++ +.++...+.. ..+---..+...+++.|+
T Consensus 114 ~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~-~l~~~f~~d~i~~~~~~~-~~kp~~~~~~~~~~~lg~ 181 (243)
T 3qxg_A 114 AWELLQKVKSEGLTPMVVTGSGQLSLLERLEH-NFPGMFHKELMVTAFDVK-YGKPNPEPYLMALKKGGL 181 (243)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCHHHHTTHHH-HSTTTCCGGGEECTTTCS-SCTTSSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHH-hHHHhcCcceEEeHHhCC-CCCCChHHHHHHHHHcCC
Confidence 34455566777788877776665444444443 33 3344433332 111112345555666665
No 338
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=34.46 E-value=1.3e+02 Score=21.87 Aligned_cols=159 Identities=13% Similarity=0.093 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEE--C--ChHHH---HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQ--G--SPISI---FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~--g--~~~~~---l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
.|..+-+..+.+.++++|..+.+.. . ++... +..+. ..+++.|....... . ..+..+. .+.+.|+++.
T Consensus 14 ~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiIi~~~~~-~--~~~~~~~-~~~~~~iPvV 88 (288)
T 1gud_A 14 PFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLS-NKNYKGIAFAPLSS-V--NLVMPVA-RAWKKGIYLV 88 (288)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHH-TSSEEEEEECCSSS-S--TTHHHHH-HHHHTTCEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCh-H--HHHHHHH-HHHHCCCeEE
Confidence 4777888888999999999988875 3 34332 33333 46788888753211 1 1112233 3445799998
Q ss_pred EecCceeecc----------cccccccCCCCchhHHHHHHHhhhcc-cc-c----cCcchhHHHHHHHHHHHHHHHhC-C
Q psy17626 87 EFVSHTLWDP----------EVVIQTNGNVPPLTYKMYLHTVSCIG-TM-H----IGYNRFRFLLECLADLDRQLKSH-G 149 (184)
Q Consensus 87 ~~~~~~L~~p----------~~i~~~~~~~~~~v~~~F~~~~~~~~-~~-~----~~~~r~~fl~~~L~~L~~~L~~~-g 149 (184)
.++... -++ ..+..++...-+.. +.+. ...++ .+ + .++.......+.+.-..+.|++. |
T Consensus 89 ~~~~~~-~~~~~~~~~~~~~~~V~~D~~~~g~~a-~~~L--~~~~G~~~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g 164 (288)
T 1gud_A 89 NLDEKI-DMDNLKKAGGNVEAFVTTDNVAVGAKG-ASFI--IDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQ 164 (288)
T ss_dssp EESSCC-CHHHHHHTTCCCSEEEECCHHHHHHHH-HHHH--HHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTT
T ss_pred EECCCC-CcccccccCCceeEEECCChHHHHHHH-HHHH--HHHhCCCCCEEEEEeCCCCCchHhHHHHHHHHHHHhCCC
Confidence 886532 111 11222110001111 1111 11112 11 1 12222233456677788888877 7
Q ss_pred CeEE-EEeCC--h---hHHHHHHHHHc-CcCeEEEcccc
Q psy17626 150 GQLF-IVQGS--P---ISIFQKLKREL-NFTKLCFEQDC 181 (184)
Q Consensus 150 ~~L~-v~~g~--~---~~~l~~l~~~~-~~~~v~~n~~~ 181 (184)
+++. +..++ . .+.+.++.+.. .+++||+..|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~ 203 (288)
T 1gud_A 165 IKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDT 203 (288)
T ss_dssp EEEEEEEECTTCHHHHHHHHHHHHHHCTTCCEEEESSHH
T ss_pred cEEEEeecCCccHHHHHHHHHHHHHhCCCceEEEECCCc
Confidence 7543 33333 2 23556676665 68999987663
No 339
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=33.98 E-value=54 Score=26.01 Aligned_cols=74 Identities=4% Similarity=-0.061 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCc-eeeccccccccc--CCCCchhHHHHHHHhh
Q psy17626 43 SIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSH-TLWDPEVVIQTN--GNVPPLTYKMYLHTVS 119 (184)
Q Consensus 43 ~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~-~L~~p~~i~~~~--~~~~~~v~~~F~~~~~ 119 (184)
+.|.+++++.+++.||...|-.. ..+.+++.+...+++++.++-. ..+|-.-....+ -|....+||.|.+...
T Consensus 269 rqIk~~vk~~~lksVFIATDa~~----~~~ELk~~L~~~~v~vv~~~pe~a~ID~~I~~~A~~FIGN~~SSFSa~I~rER 344 (362)
T 3zy2_A 269 EQIVEKVGSIGAKSVFVASDKDH----MIDEINEALKPYEIEAHRQEPDDMYTSLAIMGRADLFVGNCVSTFSHIVKRER 344 (362)
T ss_dssp HHHHHHHHHHTCSEEEEEESSCC----CHHHHHHHHGGGTCCEECCSSCCHHHHHHHHHHSSEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEEEecCCHH----HHHHHHHHhhccCceEEEeCCchhHHHHHHHHhCCEeecCccccccHHHHHHH
Confidence 55777788889999999988654 2346777787677887765421 111111111111 1245677888776554
Q ss_pred h
Q psy17626 120 C 120 (184)
Q Consensus 120 ~ 120 (184)
.
T Consensus 345 d 345 (362)
T 3zy2_A 345 D 345 (362)
T ss_dssp H
T ss_pred H
Confidence 4
No 340
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=33.92 E-value=56 Score=23.76 Aligned_cols=8 Identities=25% Similarity=0.272 Sum_probs=3.8
Q ss_pred CCeEEEEE
Q psy17626 31 GGQLFIVQ 38 (184)
Q Consensus 31 g~~L~v~~ 38 (184)
|.+|++++
T Consensus 182 ~a~l~ll~ 189 (268)
T 3ab8_A 182 GLGVRVVS 189 (268)
T ss_dssp TCCEEEEE
T ss_pred CCEEEEEE
Confidence 44454443
No 341
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=33.89 E-value=1.2e+02 Score=20.99 Aligned_cols=73 Identities=10% Similarity=-0.048 Sum_probs=50.9
Q ss_pred HHHhcCCeEEEEECChHHHHHHHHHHc--CcceEEEeec-ccchhHHHHHHHHHHHHhCCCeEEEecCceeecccccccc
Q psy17626 26 QLKSHGGQLFIVQGSPISIFQKLKREL--NFTKLCFEQD-CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQT 102 (184)
Q Consensus 26 ~L~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~v~~~~~-~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~ 102 (184)
.-.++|..+.+++.+.+..|-+.+.+. +++.|+.|.. |+.+.....+.+ ...++++.+++-..++..+.++..
T Consensus 44 ~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl----~~~~~P~VEVHiSNi~aRE~FRh~ 119 (153)
T 3lwz_A 44 QAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSVALRDAL----LGVQIPFIEIHLSNVHAREPFRHH 119 (153)
T ss_dssp HHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHH----HHHTCCEEEEESSCGGGSCGGGGC
T ss_pred HHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccceechHHHHHHH----HhcCCCEEEEEcCCccccchhhhc
Confidence 334579999999998887766666553 5788999854 444544433333 444799999998888888777653
No 342
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=33.87 E-value=1.4e+02 Score=21.89 Aligned_cols=66 Identities=11% Similarity=-0.016 Sum_probs=40.8
Q ss_pred HHHhcCCeEEEEECChHHHHHHHHHHcCcce---------------EEEeecccchhHHHHHHHHHHHHhC--CCeEEEe
Q psy17626 26 QLKSHGGQLFIVQGSPISIFQKLKRELNFTK---------------LCFEQDCEALWHKRDKKVKKWCAEN--NITVKEF 88 (184)
Q Consensus 26 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~---------------v~~~~~~~~~~~~rd~~v~~~l~~~--gi~~~~~ 88 (184)
+|++.|+.+.+..|.+...+..+.+..+... +.+.... ....-..+.+.+++. ++.+..+
T Consensus 50 ~l~~~G~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~i~~~~l---~~~~~~~i~~~~~~~~~~~~~~~~ 126 (283)
T 3dao_A 50 RLIDKGIIFVVCSGRQFSSEFKLFAPIKHKLLYITDGGTVVRTPKEILKTYPM---DEDIWKGMCRMVRDELPACDYFAA 126 (283)
T ss_dssp HHHHTTCEEEEECSSCHHHHHHHTGGGGGGCEEEETTTTEEECSSCEEEECCC---CHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHCCCEEEEEcCCCHHHHHHHHHHcCCCcEEEECCCcEEEECCEEEEEecC---CHHHHHHHHHHHHHhcCCceEEEE
Confidence 4456799999999999998888888766541 1111111 122234455555555 8877766
Q ss_pred cCceee
Q psy17626 89 VSHTLW 94 (184)
Q Consensus 89 ~~~~L~ 94 (184)
.....+
T Consensus 127 ~~~~~~ 132 (283)
T 3dao_A 127 TPDFCF 132 (283)
T ss_dssp CSSCEE
T ss_pred eCCeEE
Confidence 555444
No 343
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}
Probab=33.85 E-value=78 Score=21.98 Aligned_cols=36 Identities=8% Similarity=0.069 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCe-EEEEeCChhHHHHHHHHHcCc
Q psy17626 137 CLADLDRQLKSHGGQ-LFIVQGSPISIFQKLKRELNF 172 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~ 172 (184)
++.+...+++++|.. ++.++-|......++++++++
T Consensus 64 ~f~~~~~ef~~~gv~~VigIS~D~~~~~~~w~~~~~~ 100 (171)
T 2xhf_A 64 EYLSLYDKFKEEGYHTIACIAVNDPFVMAAWGKTVDP 100 (171)
T ss_dssp HHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCC
Confidence 555666677888996 777888888889999998887
No 344
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=33.10 E-value=1.4e+02 Score=21.68 Aligned_cols=70 Identities=11% Similarity=0.054 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCeEEEEE-------C---ChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHh
Q psy17626 11 NRFRFLLECLADLDRQLKSHGGQLFIVQ-------G---SPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAE 80 (184)
Q Consensus 11 ~r~~fl~~sL~~L~~~L~~~g~~L~v~~-------g---~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~ 80 (184)
..+..+.++|..+.+..++.|+.|.+-. | +..+.+.+++++.+-..|-+.-|.......- ....+.++.
T Consensus 124 ~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~l~~~v~~~~vg~~~D~~h~~~~g-~d~~~~l~~ 202 (269)
T 3ngf_A 124 ACEETFIENFRYAADKLAPHGITVLVEPLNTRNMPGYFIVHQLEAVGLVKRVNRPNVAVQLDLYHAQIMD-GDLTRLIEK 202 (269)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCEEEECCCCTTTSTTBSCCCHHHHHHHHHHHCCTTEEEEEEHHHHHHHT-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEeeCCcccCccchhcCHHHHHHHHHHhCCCCCCeEEEhhhHHhhC-CCHHHHHHH
Confidence 3567889999999999999999988762 1 3456788899988877888888876543322 123444444
Q ss_pred C
Q psy17626 81 N 81 (184)
Q Consensus 81 ~ 81 (184)
.
T Consensus 203 ~ 203 (269)
T 3ngf_A 203 M 203 (269)
T ss_dssp T
T ss_pred h
Confidence 3
No 345
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=32.99 E-value=1.5e+02 Score=21.86 Aligned_cols=162 Identities=10% Similarity=0.037 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.|..+-+..+++.+++.|..+.+... ++.. .+..+. ..+++.|+..-.... . .+..+ +.+.+.|+++..+
T Consensus 15 ~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~-~--~~~~~-~~~~~~~iPvV~~ 89 (306)
T 2vk2_A 15 GWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFV-AQGVDAIFIAPVVAT-G--WEPVL-KEAKDAEIPVFLL 89 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHH-HHTCSEEEECCSSSS-S--CHHHH-HHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChh-h--HHHHH-HHHHHCCCCEEEe
Confidence 36666777788889999999988764 3432 344443 467898887532211 1 11122 3345679999887
Q ss_pred cCceeec-----ccccccccCCCCchhHHHHHHHh----hhccccccCcchhHHHHHHHHHHHHHHHhCCC-eEE-EEeC
Q psy17626 89 VSHTLWD-----PEVVIQTNGNVPPLTYKMYLHTV----SCIGTMHIGYNRFRFLLECLADLDRQLKSHGG-QLF-IVQG 157 (184)
Q Consensus 89 ~~~~L~~-----p~~i~~~~~~~~~~v~~~F~~~~----~~~~~~~~~~~r~~fl~~~L~~L~~~L~~~g~-~L~-v~~g 157 (184)
+...--. ...+..++...-+..-......- .+...- .++.......+.+.-..+.|++.|. ... +..+
T Consensus 90 ~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i-~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~ 168 (306)
T 2vk2_A 90 DRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVEL-QGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSG 168 (306)
T ss_dssp SSCCCCSCGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEE-ECSTTCHHHHHHHHHHHHHTTTCTTEEEEEEEEC
T ss_pred cCCCCCCCccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEE-EcCCCChhHHHHHHHHHHHHhhCCCeEEEEeccC
Confidence 6532110 01111111000011111111110 000000 1222223445667778888888886 322 2334
Q ss_pred C--h---hHHHHHHHHHc----CcCeEEEcccc
Q psy17626 158 S--P---ISIFQKLKREL----NFTKLCFEQDC 181 (184)
Q Consensus 158 ~--~---~~~l~~l~~~~----~~~~v~~n~~~ 181 (184)
+ . .+.+.++.+.. .+++||+..|.
T Consensus 169 ~~~~~~~~~~~~~ll~~~~~~~~~~ai~~~nd~ 201 (306)
T 2vk2_A 169 DFTRSKGKEVMESFIKAENNGKNICMVYAHNDD 201 (306)
T ss_dssp TTCHHHHHHHHHHHHHHTTTTTTCCEEEESSHH
T ss_pred CCcHHHHHHHHHHHHHhCCCCCCeeEEEECCch
Confidence 3 1 34567777764 68999987653
No 346
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=32.66 E-value=91 Score=22.93 Aligned_cols=59 Identities=15% Similarity=0.123 Sum_probs=46.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCCeEEEEEC--------ChHHHHHHHHHHcCcceEEEeecccchh
Q psy17626 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQG--------SPISIFQKLKRELNFTKLCFEQDCEALW 67 (184)
Q Consensus 9 ~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~~~~~~v~~~~~~~~~~ 67 (184)
....+..+.++|..+.+..++.|+.|.+-.- +..+.+.+++++.+-..|.+.-|.....
T Consensus 137 ~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~~~~ll~~v~~~~vg~~~D~~h~~ 203 (287)
T 3kws_A 137 TMETRDFLCEQFNEMGTFAAQHGTSVIFEPLNRKECFYLRQVADAASLCRDINNPGVRCMGDFWHMT 203 (287)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTTCSSCCCHHHHHHHHHHHCCTTEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCcccCcccCCHHHHHHHHHHcCCCCeeEEeehHHHH
Confidence 3455678899999999999999999888622 3467788999998888888888876554
No 347
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20
Probab=32.24 E-value=58 Score=23.18 Aligned_cols=44 Identities=7% Similarity=0.157 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHc-CcceEEEeec
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKLCFEQD 62 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~-~~~~v~~~~~ 62 (184)
.+.++=+.|++.|.++.|+.+.+...+..+++.. +.+.|+.+.+
T Consensus 81 g~~~~l~~L~~~g~~~~ivS~~~~~~~~~~l~~l~~~~~v~~~~~ 125 (236)
T 2fea_A 81 GFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVEKDRIYCNHA 125 (236)
T ss_dssp THHHHHHHHHHHTCCEEEEEEEEHHHHHHHHTTTSCGGGEEEEEE
T ss_pred cHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHhcCCCCCeEEeeee
Confidence 3455666677778899888888777777776632 3366777654
No 348
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A*
Probab=32.12 E-value=48 Score=22.55 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 138 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 138 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
+.++-+.|++.|.++.++.+.+...+..+.+..++.
T Consensus 89 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~ 124 (216)
T 2pib_A 89 VREALEFVKSKRIKLALATSTPQREALERLRRLDLE 124 (216)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHCCCCEEEEeCCcHHhHHHHHHhcChH
Confidence 344455677779999999988888788888887754
No 349
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=32.08 E-value=43 Score=23.03 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe
Q psy17626 138 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174 (184)
Q Consensus 138 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 174 (184)
+.++-+.|++.|+++.++.+.....+..+.+..++..
T Consensus 75 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~ 111 (205)
T 3m9l_A 75 AVELVRELAGRGYRLGILTRNARELAHVTLEAIGLAD 111 (205)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHhcCCeEEEEeCCchHHHHHHHHHcCchh
Confidence 4445556677789999988887777777888877743
No 350
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=32.04 E-value=1.4e+02 Score=22.71 Aligned_cols=54 Identities=4% Similarity=0.060 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCe
Q psy17626 21 ADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~ 84 (184)
.++-+.+.+.|.++++-.-+..+.+.++. +.+++.|+++. | ..+++.+++.|+.
T Consensus 258 ~~~v~~~~~~Gl~V~~WTVn~~~~~~~l~-~~GVDgIiTD~---P------~~~~~~l~~~g~~ 311 (313)
T 3l12_A 258 PELVAEAHDLGLIVLTWTVNEPEDIRRMA-TTGVDGIVTDY---P------GRTQRILIDMGLS 311 (313)
T ss_dssp HHHHHHHHHTTCEEEEBCCCSHHHHHHHH-HHTCSEEEESC---H------HHHHHHHHHTTCB
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HcCCCEEEeCC---H------HHHHHHHHhcCcC
Confidence 35666777889988887777777777766 47899999875 2 2455566677764
No 351
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=32.02 E-value=1.1e+02 Score=20.96 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHc
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 52 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 52 (184)
-+..|.++.+++++.|..++.+.-+..+.+.++++++
T Consensus 49 e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~ 85 (186)
T 1n8j_A 49 ELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSS 85 (186)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc
Confidence 4567888888888888888888888778888888887
No 352
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A
Probab=32.00 E-value=1.2e+02 Score=21.09 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 139 ADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 139 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
.++-+.|++.|.++.++.+.+...+..+.+..++.
T Consensus 89 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~ 123 (222)
T 2nyv_A 89 PYTLEALKSKGFKLAVVSNKLEELSKKILDILNLS 123 (222)
T ss_dssp HHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCH
Confidence 33444566679999999888877777788887754
No 353
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}
Probab=31.99 E-value=1.1e+02 Score=22.04 Aligned_cols=61 Identities=8% Similarity=0.046 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc----ceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 21 ADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
.++-+.|++.|.++.|+.+.+.. +..+.+..++ +.++...+... .+-.-..+...+++.|+
T Consensus 112 ~~~l~~l~~~g~~~~i~tn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~-~Kp~~~~~~~~~~~~g~ 176 (263)
T 3k1z_A 112 EDTLRECRTRGLRLAVISNFDRR-LEGILGGLGLREHFDFVLTSEAAGW-PKPDPRIFQEALRLAHM 176 (263)
T ss_dssp HHHHHHHHHTTCEEEEEESCCTT-HHHHHHHTTCGGGCSCEEEHHHHSS-CTTSHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCcEEEEeCCcHH-HHHHHHhCCcHHhhhEEEeecccCC-CCCCHHHHHHHHHHcCC
Confidence 45556677778888888775543 4666666655 45555544321 11112234445555565
No 354
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=31.65 E-value=1.8e+02 Score=22.45 Aligned_cols=73 Identities=7% Similarity=0.089 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECCh-HHHHHHHHHHc------CcceEEEeecccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQGSP-ISIFQKLKREL------NFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g~~-~~~l~~l~~~~------~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
...+++.-|++.+++.+..++.+.|.. ..++..|+.+. ++..|+.+..+.+. +..+.+.+.+++.|++++.
T Consensus 31 le~~a~~ilr~~~~~~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~--et~~~v~~~~~~~gi~l~v 108 (325)
T 1zun_A 31 LEAESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQ--EMYRFRDQMVEEMGLDLIT 108 (325)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCH--HHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCH--HHHHHHHHHHHHcCCCEEE
Confidence 345688888888887664455556644 34677777664 56778887666532 3445677778888999887
Q ss_pred ec
Q psy17626 88 FV 89 (184)
Q Consensus 88 ~~ 89 (184)
+.
T Consensus 109 ~~ 110 (325)
T 1zun_A 109 HI 110 (325)
T ss_dssp EC
T ss_pred Ee
Confidence 65
No 355
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10
Probab=31.39 E-value=56 Score=24.14 Aligned_cols=30 Identities=10% Similarity=0.223 Sum_probs=25.1
Q ss_pred HHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 26 QLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 26 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
+|++.|+.+.+..|.+...+..+++..+++
T Consensus 37 ~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 66 (275)
T 1xvi_A 37 RLREANVPVILCSSKTSAEMLYLQKTLGLQ 66 (275)
T ss_dssp HHHHTTCCEEEECSSCHHHHHHHHHHTTCT
T ss_pred HHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 345579999999999999999999888764
No 356
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=31.25 E-value=1.5e+02 Score=21.61 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCc
Q psy17626 41 PISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSH 91 (184)
Q Consensus 41 ~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~ 91 (184)
+.+.+...++..++..|-.= +||.....+.+++.+++.|+++....+.
T Consensus 104 ~~~A~~~al~~~g~~rvgll---tpy~~~~~~~~~~~l~~~Giev~~~~~~ 151 (240)
T 3ixl_A 104 MSTAVLNGLRALGVRRVALA---TAYIDDVNERLAAFLAEESLVPTGCRSL 151 (240)
T ss_dssp HHHHHHHHHHHTTCSEEEEE---ESSCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHhCCCEEEEE---eCChHHHHHHHHHHHHHCCCEEeccccC
Confidence 34445555566677777664 3566666677888889999988765443
No 357
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=31.22 E-value=32 Score=25.91 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=38.9
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCCeEEEEeCCh--hH---HHHHHHHHcCcCeEEEc
Q psy17626 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP--IS---IFQKLKRELNFTKLCFE 178 (184)
Q Consensus 127 ~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~--~~---~l~~l~~~~~~~~v~~n 178 (184)
+..++..+...+......++..-..|.|+.+|. .+ .|+.+|++++|.-++..
T Consensus 118 ~~k~p~~lk~GvneVtKaIekgKAqLVVIA~DvdPielv~~LPaLCee~~VPY~~V~ 174 (255)
T 4a17_F 118 ETKKPIVLKYGLNHITTLIENKQAKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFVK 174 (255)
T ss_dssp CCCCCCCEEECHHHHHHHHHTSCCSEEEEESCCSSTHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCCCceeecchHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHcCCCEEEEC
Confidence 344556666778888888888778899887654 33 56899999999988764
No 358
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=31.18 E-value=86 Score=21.32 Aligned_cols=37 Identities=8% Similarity=-0.002 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCe-EEEEECChHHHHHHHHHHcCc
Q psy17626 18 ECLADLDRQLKSHGGQ-LFIVQGSPISIFQKLKRELNF 54 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~ 54 (184)
..|.++.+++++.|.. ++.+.-+..+...++++++++
T Consensus 65 p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~ 102 (171)
T 2pwj_A 65 PPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQA 102 (171)
T ss_dssp HHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCC
Confidence 3455566666666666 666655555566666666664
No 359
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=30.96 E-value=1e+02 Score=21.09 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeE
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL 175 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v 175 (184)
-+.+.-+++.+.|..+.+..+...+....++.+.||..+
T Consensus 60 ~l~~~v~kI~~~g~nVVl~~k~I~d~a~~~l~k~gI~~v 98 (159)
T 1ass_A 60 TFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAV 98 (159)
T ss_dssp HHHHHHHHHHHTTCSEEEESSCBCHHHHHHHHHTTCEEE
T ss_pred HHHHHhhhhhhCCCeEEEECCccCHHHHHHHHHCCCEEE
Confidence 345556677788999998888888877888888888766
No 360
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=30.64 E-value=1.7e+02 Score=21.94 Aligned_cols=157 Identities=14% Similarity=0.064 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChHHH---HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHh-CCCeEEE
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG--SPISI---FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAE-NNITVKE 87 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~~---l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~-~gi~~~~ 87 (184)
.|..+-+..+.+.+++.|..+.+... ++... +..+ ...+++.|+..-..... .+.+.+.+ .|+++..
T Consensus 71 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~~~~~~~------~~~~~l~~~~~iPvV~ 143 (340)
T 1qpz_A 71 AYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMM-AQKRVDGLLVMCSEYPE------PLLAMLEEYRHIPMVV 143 (340)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHH-HHTTCSEEEECCSCCCH------HHHHHHHTTTTSCEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHH-HcCCCCEEEEeCCCCCh------HHHHHHHhhCCCCEEE
Confidence 47777888889999999999888653 33322 3333 35689988875322111 12233333 6899887
Q ss_pred ecCceeec--ccccccccCCCCchhHHHHHHHhhhccccc----cCcchhHHHHHHHHHHHHHHHhCCCeEE---EEeCC
Q psy17626 88 FVSHTLWD--PEVVIQTNGNVPPLTYKMYLHTVSCIGTMH----IGYNRFRFLLECLADLDRQLKSHGGQLF---IVQGS 158 (184)
Q Consensus 88 ~~~~~L~~--p~~i~~~~~~~~~~v~~~F~~~~~~~~~~~----~~~~r~~fl~~~L~~L~~~L~~~g~~L~---v~~g~ 158 (184)
++...--. ...+..++...-+.... +.. +.+-.+ .++.......+.+.-..+.|++.|+++. +..++
T Consensus 144 ~~~~~~~~~~~~~V~~D~~~~~~~a~~-~L~---~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 219 (340)
T 1qpz_A 144 MDWGEAKADFTDAVIDNAFEGGYMAGR-YLI---ERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGD 219 (340)
T ss_dssp EEESSCCCSSSEEEECCHHHHHHHHHH-HHH---HHTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCC
T ss_pred EecccCCCCCCCEEEECHHHHHHHHHH-HHH---HCCCCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeCC
Confidence 75432100 11222211000011111 111 112111 1222223345667777888888887542 33332
Q ss_pred --h---hHHHHHHHHH-cCcCeEEEcccc
Q psy17626 159 --P---ISIFQKLKRE-LNFTKLCFEQDC 181 (184)
Q Consensus 159 --~---~~~l~~l~~~-~~~~~v~~n~~~ 181 (184)
. .+.+.++.+. ..+++||+..|.
T Consensus 220 ~~~~~~~~~~~~ll~~~~~~~ai~~~nd~ 248 (340)
T 1qpz_A 220 FEPESGYRAMQQILSQPHRPTAVFCGGDI 248 (340)
T ss_dssp SSHHHHHHHHHHHHTSSSCCSEEEESSHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcEEEECCHH
Confidence 2 2355666665 478999987653
No 361
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6
Probab=30.56 E-value=1.2e+02 Score=20.14 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=12.2
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcC
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELN 53 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~ 53 (184)
+.|++.|.++.+..+.....+. ..+..+
T Consensus 95 ~~l~~~g~~~~i~s~~~~~~~~-~~~~~~ 122 (207)
T 2go7_A 95 AWADESGIQQFIYTHKGNNAFT-ILKDLG 122 (207)
T ss_dssp HHHHHTTCEEEEECSSCTHHHH-HHHHHT
T ss_pred HHHHHCCCeEEEEeCCchHHHH-HHHHcC
Confidence 3344445555555444433333 333333
No 362
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=30.20 E-value=1.3e+02 Score=22.97 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=37.4
Q ss_pred CChhh-HHHHHHHHHHHHHHHHhc-CCeEEEEECChHHHHHHHHHHcCcceEEEee
Q psy17626 8 IGYNR-FRFLLECLADLDRQLKSH-GGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (184)
Q Consensus 8 ~~~~r-~~fl~~sL~~L~~~L~~~-g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 61 (184)
.++.- .+|....+..+-+.+++. |.+++...+.....++. ..+.+++.+-++.
T Consensus 206 lsp~~f~ef~~p~~k~i~~~i~~~~g~~~i~~~~g~~~~l~~-l~~~g~d~~~~d~ 260 (338)
T 2eja_A 206 LSLEDYGEYVYPYVNYLISELKDFSDTPVIYFFRGSSSFIDL-AVDYRADALSVDW 260 (338)
T ss_dssp SCHHHHHHHTHHHHHHHHHHHHHHCCCCEEEEESSHHHHHHH-HTTSCCSEEECCT
T ss_pred CCHHHHHHHhHHHHHHHHHHHhhcCCCCEEEEcCCcHHHHHH-HHHcCCCEEEeCC
Confidence 34443 358888888888888887 88877776666556666 4557888776643
No 363
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=30.15 E-value=1.1e+02 Score=24.36 Aligned_cols=36 Identities=8% Similarity=0.054 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHH
Q psy17626 134 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE 169 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~ 169 (184)
++..+.++=+.|++.|+.+.|..+.+...+...+++
T Consensus 257 ~ypgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~~l~~ 292 (387)
T 3nvb_A 257 AFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFER 292 (387)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhh
Confidence 456677777788888999999998888777777766
No 364
>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A
Probab=29.71 E-value=1.5e+02 Score=20.99 Aligned_cols=60 Identities=8% Similarity=-0.017 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc----ceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 21 ADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 21 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
.++-+.|+ |.++.|..+.+...+..+.+..++ +.++...+... .+..-..+...+++.|+
T Consensus 99 ~~~l~~l~--g~~~~i~t~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~-~Kp~~~~~~~~~~~~~~ 162 (253)
T 1qq5_A 99 AQCLAELA--PLKRAILSNGAPDMLQALVANAGLTDSFDAVISVDAKRV-FKPHPDSYALVEEVLGV 162 (253)
T ss_dssp HHHHHHHT--TSEEEEEESSCHHHHHHHHHHTTCGGGCSEEEEGGGGTC-CTTSHHHHHHHHHHHCC
T ss_pred HHHHHHHc--CCCEEEEeCcCHHHHHHHHHHCCchhhccEEEEccccCC-CCCCHHHHHHHHHHcCC
Confidence 34444555 889999988888888888887764 44555444321 11222345555665565
No 365
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.66 E-value=82 Score=19.83 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=19.1
Q ss_pred EEEeecccchhH--HHHHHHHHHHHhCCCeEEEe
Q psy17626 57 LCFEQDCEALWH--KRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 57 v~~~~~~~~~~~--~rd~~v~~~l~~~gi~~~~~ 88 (184)
+++....+|+.. ++.++++++|++.||++..+
T Consensus 11 ~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~v 44 (111)
T 2ct6_A 11 RVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEV 44 (111)
T ss_dssp EEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEE
Confidence 444556666644 33446677777777766543
No 366
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=29.65 E-value=1.3e+02 Score=20.49 Aligned_cols=7 Identities=0% Similarity=-0.050 Sum_probs=3.1
Q ss_pred HHHcCcc
Q psy17626 49 KRELNFT 55 (184)
Q Consensus 49 ~~~~~~~ 55 (184)
+++.++.
T Consensus 136 ~~~~gi~ 142 (198)
T 1n3y_A 136 ADAAGII 142 (198)
T ss_dssp HHHTTCE
T ss_pred HHHCCCE
Confidence 3444543
No 367
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=29.57 E-value=91 Score=21.20 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEECC
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGS 40 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~ 40 (184)
..+.++=+.|++.|.++.|+.+.
T Consensus 45 pg~~e~L~~L~~~G~~l~i~Tn~ 67 (176)
T 2fpr_A 45 PGVIPQLLKLQKAGYKLVMITNQ 67 (176)
T ss_dssp TTHHHHHHHHHHTTEEEEEEEEC
T ss_pred ccHHHHHHHHHHCCCEEEEEECC
Confidence 33444444555556666666554
No 368
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Probab=29.29 E-value=62 Score=22.81 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=28.5
Q ss_pred HHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCc----CeEEEccc
Q psy17626 140 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQD 180 (184)
Q Consensus 140 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~n~~ 180 (184)
++-+.|.+.|.++.++.+.+...+..+.+.+|+ +.+++..+
T Consensus 112 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~ 156 (240)
T 2no4_A 112 ETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSADD 156 (240)
T ss_dssp HHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEEGGG
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHhcCcHHHcCEEEEccc
Confidence 334456677999999988887777777787775 34554433
No 369
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=29.28 E-value=1.4e+02 Score=22.00 Aligned_cols=68 Identities=13% Similarity=0.008 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCeEE-EEECChHHHHHHHHHHcCcceEEEeecccchhH------HHHHHHHHHHHhCCCeEEEe
Q psy17626 19 CLADLDRQLKSHGGQLF-IVQGSPISIFQKLKRELNFTKLCFEQDCEALWH------KRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~-v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~------~rd~~v~~~l~~~gi~~~~~ 88 (184)
.+.++.+.++. |.++. +++|- -.....++++.+++.-+.+.+...-.. .....+.+.+.+.|++....
T Consensus 28 ~l~~l~~~i~~-G~~vv~lVhGG-G~~~~~~~~~~gi~~~~~~~d~~gl~~t~~~~~~ln~~~v~~l~~~G~~a~~l 102 (249)
T 3ll5_A 28 AIRSIVKVLSG-IEDLVCVVHGG-GSFGHIKAMEFGLPGPKNPRSSIGYSIVHRDMENLDLMVIDAMIEMGMRPISV 102 (249)
T ss_dssp HHHHHHHHHHT-CTTEEEEEECC-GGGTHHHHHHHTCSEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHhc-CCceEEEEECc-cHHHHHHHHHhCCCcCCCccccccHHHHHHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 45566666666 99998 88876 222556777788877664322111111 11223335566777766554
No 370
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13
Probab=29.22 E-value=46 Score=26.53 Aligned_cols=39 Identities=23% Similarity=0.186 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
...+.++=+.|++.|+++.|..+.+...+....+..++.
T Consensus 217 ~pGv~elL~~Lk~~Gi~laIvTn~~~~~~~~~L~~lgL~ 255 (384)
T 1qyi_A 217 VDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLL 255 (384)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCG
T ss_pred CcCHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcCCh
Confidence 445555556666667777777766666666556655554
No 371
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=29.20 E-value=57 Score=21.36 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=26.3
Q ss_pred HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeE
Q psy17626 45 FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITV 85 (184)
Q Consensus 45 l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~ 85 (184)
|.+=+.+-+|+.|++++.--.| -.|-..+.+.+.+.|+.|
T Consensus 77 lA~Ral~~GI~~vvfDrgg~~y-hGrV~Ala~~are~Gl~f 116 (116)
T 3r8s_O 77 VAERALEKGIKDVSFDRSGFQY-HGRVQALADAAREAGLQF 116 (116)
T ss_dssp HHHHHHTTTCCCCEEECTTSCS-SSHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHCCCCEEEEecCCCcc-cHHHHHHHHHHHHhCCCC
Confidence 3444556689999988753333 356667777777778753
No 372
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=29.02 E-value=2.1e+02 Score=22.92 Aligned_cols=60 Identities=7% Similarity=0.056 Sum_probs=33.7
Q ss_pred CCeEEE-EECChH-HHHHHHHHH-----c--CcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 31 GGQLFI-VQGSPI-SIFQKLKRE-----L--NFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 31 g~~L~v-~~g~~~-~~l~~l~~~-----~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
|.++.| +.|.+. .++..++.+ . .+..|++|....+......+.+++.|++.||+++...-
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~~ 81 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERV 81 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEEe
Confidence 555444 456443 344444443 3 34556666554443444456777888888888776543
No 373
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=29.00 E-value=57 Score=22.54 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe
Q psy17626 138 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174 (184)
Q Consensus 138 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 174 (184)
+.++-+.|.+.|+++.++.+.+........+..++..
T Consensus 89 ~~~~l~~L~~~g~~~~i~tn~~~~~~~~~l~~~~l~~ 125 (216)
T 3kbb_A 89 VREALEFVKSKRIKLALATSTPQREALERLRRLDLEK 125 (216)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHcCCCcccccCCcHHHHHHHHHhcCCCc
Confidence 4455667778899999999888877777777777653
No 374
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=28.94 E-value=1.4e+02 Score=21.65 Aligned_cols=58 Identities=5% Similarity=-0.119 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCeEEEEEC--------ChHHHHHHHHHHcCcceEEEeecccchh
Q psy17626 10 YNRFRFLLECLADLDRQLKSHGGQLFIVQG--------SPISIFQKLKRELNFTKLCFEQDCEALW 67 (184)
Q Consensus 10 ~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~~~~~~v~~~~~~~~~~ 67 (184)
...+..+.++|..+.+..++.|+.|.+-.- +..+.+.+++++.+-..|-+.-|.....
T Consensus 125 ~~~~~~~~~~l~~l~~~a~~~gv~l~lEn~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~D~~h~~ 190 (290)
T 2qul_A 125 RPYVDRAIESVRRVIKVAEDYGIIYALEVVNRFEQWLCNDAKEAIAFADAVDSPACKVQLDTFHMN 190 (290)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHTCEEEEECCCTTTCSSCCSHHHHHHHHHHHCCTTEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEEeCccccccccCCHHHHHHHHHHcCCCCEEEEEEchhhh
Confidence 455678999999999999999999888632 2457788899988877788888876553
No 375
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=28.93 E-value=58 Score=21.16 Aligned_cols=44 Identities=7% Similarity=0.031 Sum_probs=25.2
Q ss_pred HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 45 FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 45 l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
..+.++.-.+.-|+...|.+|.+.. ..+...|++.||++..+.+
T Consensus 33 v~kaI~~gka~LVvIA~D~~p~~i~--~~l~~lC~~~~VP~~~v~s 76 (113)
T 3jyw_G 33 VVALIENKKAKLVLIANDVDPIELV--VFLPALCKKMGVPYAIVKG 76 (113)
T ss_dssp HHHTTTTTCCSEEEECSCCSSHHHH--TTHHHHHHHTTCCCEECSC
T ss_pred HHHHHHcCCceEEEEeCCCCHHHHH--HHHHHHHHHcCCCEEEECC
Confidence 3344555667777777776664322 2345566667777665443
No 376
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=28.88 E-value=1.3e+02 Score=19.85 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=29.3
Q ss_pred HHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 47 KLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 47 ~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
+.++.-++.-|+...|.+|.... ..+...|...||++..+.+
T Consensus 34 Kai~~gka~LViiA~D~~p~~~~--~~i~~lc~~~~Ip~~~v~s 75 (126)
T 2xzm_U 34 RTIEAKQALFVCVAEDCDQGNYV--KLVKALCAKNEIKYVSVPK 75 (126)
T ss_dssp HHHHHTCCSEEEEESSCCSTTHH--HHHHHHHHHTTCCEEEESC
T ss_pred HHHHcCCceEEEEeCCCChHHHH--HHHHHHHHHhCCCEEEECC
Confidence 44466778888888887764333 3567778888888887654
No 377
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=28.56 E-value=68 Score=20.86 Aligned_cols=38 Identities=3% Similarity=-0.001 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
..|.++.+++...|+.++.+.-+..+.+.+++++++++
T Consensus 44 ~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~ 81 (151)
T 3raz_A 44 PAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVS 81 (151)
T ss_dssp HHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCC
Confidence 34566666665556666666666666777777777654
No 378
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=28.48 E-value=1.9e+02 Score=22.88 Aligned_cols=76 Identities=8% Similarity=0.140 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcC-CeEEEEEC-Ch------HHHHHHHHHHcCcceEEEee-cccchhHHHHHHHHHHHHhCCCe-EEEe
Q psy17626 19 CLADLDRQLKSHG-GQLFIVQG-SP------ISIFQKLKRELNFTKLCFEQ-DCEALWHKRDKKVKKWCAENNIT-VKEF 88 (184)
Q Consensus 19 sL~~L~~~L~~~g-~~L~v~~g-~~------~~~l~~l~~~~~~~~v~~~~-~~~~~~~~rd~~v~~~l~~~gi~-~~~~ 88 (184)
++.+|.+.++++| .+..|+.| .. .+.+.+.+++.+++.+.+.. +..|..... .++.+.+.+.|+. +..+
T Consensus 30 ~l~~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v-~~~~~~~~~~~~D~IIav 108 (407)
T 1vlj_A 30 TIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKV-HEAVEVAKKEKVEAVLGV 108 (407)
T ss_dssp CGGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHH-HHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHH-HHHHHHHHhcCCCEEEEe
Confidence 4556666777777 67777776 43 23344444555666555543 222333333 3444555666665 3445
Q ss_pred cCceeec
Q psy17626 89 VSHTLWD 95 (184)
Q Consensus 89 ~~~~L~~ 95 (184)
.+....|
T Consensus 109 GGGsviD 115 (407)
T 1vlj_A 109 GGGSVVD 115 (407)
T ss_dssp ESHHHHH
T ss_pred CChhHHH
Confidence 5544433
No 379
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10
Probab=28.47 E-value=1e+02 Score=21.54 Aligned_cols=37 Identities=5% Similarity=0.183 Sum_probs=28.6
Q ss_pred HHHHHHHHH-HhCCCe-EEEEeCChhHHHHHHHHHcCcC
Q psy17626 137 CLADLDRQL-KSHGGQ-LFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 137 ~L~~L~~~L-~~~g~~-L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
.+.+...++ +++|.. ++.++-+......++++++++.
T Consensus 66 ~f~~~~~~f~~~~g~~~V~gvS~D~~~~~~~~~~~~~~~ 104 (182)
T 1xiy_A 66 GYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIK 104 (182)
T ss_dssp HHHHTHHHHHTTSCCSEEEEEESSCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCC
Confidence 344555667 788986 7778888888899999998874
No 380
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=28.40 E-value=1e+02 Score=20.08 Aligned_cols=44 Identities=9% Similarity=0.135 Sum_probs=27.6
Q ss_pred CChHHHHHHHHHHcCcceEEEeec-----ccchhHHHHHHHHHHHHhCCC-eEEEe
Q psy17626 39 GSPISIFQKLKRELNFTKLCFEQD-----CEALWHKRDKKVKKWCAENNI-TVKEF 88 (184)
Q Consensus 39 g~~~~~l~~l~~~~~~~~v~~~~~-----~~~~~~~rd~~v~~~l~~~gi-~~~~~ 88 (184)
|...+.+.+++++.++ |+|.+. |+|+.. ++++.|.+.|+ ++..+
T Consensus 7 ~~~~e~i~~~i~~~~V--vvF~Kgt~~~P~C~fc~----~ak~lL~~~gv~~~~~~ 56 (118)
T 2wul_A 7 GGSAEQLDALVKKDKV--VVFLKGTPEQPQCGFSN----AVVQILRLHGVRDYAAY 56 (118)
T ss_dssp --CHHHHHHHHHHSSE--EEEESBCSSSBSSHHHH----HHHHHHHHTTCCSCEEE
T ss_pred cchHHHHHHHHhcCCE--EEEEcCCCCCCCCHHHH----HHHHHHHHhCCcCeEee
Confidence 3456778899988776 666553 566654 34566777787 35543
No 381
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=28.35 E-value=1.3e+02 Score=20.00 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEEC
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQG 39 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g 39 (184)
..+.++.+.|.++|-.|+--.|
T Consensus 37 ~~l~~~a~~l~~lGf~i~AT~G 58 (143)
T 2yvq_A 37 PRFLGVAEQLHNEGFKLFATEA 58 (143)
T ss_dssp HHHHHHHHHHHTTTCEEEEEHH
T ss_pred HHHHHHHHHHHHCCCEEEECch
Confidence 3466677777778877664433
No 382
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}
Probab=28.31 E-value=88 Score=21.69 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 54 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 54 (184)
.+.++-+.|++.|.++.|..+.+. +..+++..++
T Consensus 96 ~~~~~l~~l~~~g~~~~i~t~~~~--~~~~l~~~gl 129 (233)
T 3nas_A 96 GIGRLLCQLKNENIKIGLASSSRN--APKILRRLAI 129 (233)
T ss_dssp THHHHHHHHHHTTCEEEECCSCTT--HHHHHHHTTC
T ss_pred CHHHHHHHHHHCCCcEEEEcCchh--HHHHHHHcCc
Confidence 455666777788888888877543 5555666654
No 383
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=28.04 E-value=47 Score=23.20 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCc
Q psy17626 138 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 172 (184)
Q Consensus 138 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 172 (184)
+.++-+.|++.|.++.++.+.....+..+.+..++
T Consensus 108 ~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl 142 (231)
T 3kzx_A 108 AIELLDTLKENNITMAIVSNKNGERLRSEIHHKNL 142 (231)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHCCc
Confidence 34455666777899998888777777777777775
No 384
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6
Probab=27.99 E-value=59 Score=23.22 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=25.7
Q ss_pred HHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 140 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 140 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
++-+.|++.|+++.++.+.+...+..+++..++.
T Consensus 121 ~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~gl~ 154 (243)
T 2hsz_A 121 ETLEALKAQGYILAVVTNKPTKHVQPILTAFGID 154 (243)
T ss_dssp HHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG
T ss_pred HHHHHHHHCCCEEEEEECCcHHHHHHHHHHcCch
Confidence 3334567779999999988887778888888754
No 385
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=27.84 E-value=1e+02 Score=23.11 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCCe-EEEEE-------CChHHHHHHHHHHc---CcceEEEeecccchh
Q psy17626 12 RFRFLLECLADLDRQLKSHGGQ-LFIVQ-------GSPISIFQKLKREL---NFTKLCFEQDCEALW 67 (184)
Q Consensus 12 r~~fl~~sL~~L~~~L~~~g~~-L~v~~-------g~~~~~l~~l~~~~---~~~~v~~~~~~~~~~ 67 (184)
.+..+.++|..+.+..++.|+. |.+-. ++..+.+.++++.. +-..|-+.-|.....
T Consensus 152 ~~~~~~~~l~~l~~~a~~~Gv~~l~lE~~~~~~~~~~t~~~~~~l~~~v~~~~~~~vg~~lD~~H~~ 218 (316)
T 3qxb_A 152 IYAIARDMWIELAAYAKRQGLSMLYVEPVPLATEFPSSAADAARLMADLDGRTEIPVRLLVDWGHAL 218 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEECCCSCTTBSSCSHHHHHHHHHHHTTTSSSCEEEEEEHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEecCCccccCCCHHHHHHHHHHHhccCCCCEEEEEEccchh
Confidence 3567899999999999999999 87643 34567777888887 667788888876543
No 386
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=27.68 E-value=1.7e+02 Score=20.90 Aligned_cols=57 Identities=9% Similarity=0.064 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCeEEEEEC----------ChHHHHHHHHHHcCcceEEEeecccchh
Q psy17626 11 NRFRFLLECLADLDRQLKSHGGQLFIVQG----------SPISIFQKLKRELNFTKLCFEQDCEALW 67 (184)
Q Consensus 11 ~r~~fl~~sL~~L~~~L~~~g~~L~v~~g----------~~~~~l~~l~~~~~~~~v~~~~~~~~~~ 67 (184)
..+..+.++|..+.+..++.|+.|.+-.- +..+.+.+++++.+-..|-+.-|.....
T Consensus 117 ~~~~~~~~~l~~l~~~a~~~gv~l~~E~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~D~~h~~ 183 (260)
T 1k77_A 117 RYRAVFIDNIRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQALAIVEEVARDNVFIQLDTFHAQ 183 (260)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCEEEECCCCTTTSTTBSCCSHHHHHHHHHHHCCTTEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEEeCCccCCCcCccCCHHHHHHHHHHhCCCCEEEEeeHHHHH
Confidence 44567889999999998899999877432 3456788888888877788888876554
No 387
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=27.66 E-value=48 Score=21.16 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=9.1
Q ss_pred HHHHHHHHHHh-cCCeEEEE
Q psy17626 19 CLADLDRQLKS-HGGQLFIV 37 (184)
Q Consensus 19 sL~~L~~~L~~-~g~~L~v~ 37 (184)
.|..+.+.+++ .|++|.+.
T Consensus 68 ~L~~~~~~~~~~~g~~l~l~ 87 (121)
T 3t6o_A 68 LLVRGWKRIKEDQQGVFALC 87 (121)
T ss_dssp HHHHHHHHHTTSTTCEEEEE
T ss_pred HHHHHHHHHHHhcCCEEEEE
Confidence 34444444454 55555444
No 388
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=27.66 E-value=1.4e+02 Score=22.09 Aligned_cols=74 Identities=11% Similarity=-0.058 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEEC----ChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCcee
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQG----SPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTL 93 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g----~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~L 93 (184)
.-+..+++.|++.|+++....- +..+.+.+|.. +.++||+..|...... -+.+.+...+.+|++..|++..+
T Consensus 156 ~r~~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~~--~~dai~~~~D~~a~g~--~~~l~~~~~~~~i~vig~d~~~~ 231 (302)
T 2qh8_A 156 SLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAE--KSDVIYALIDNTVASA--IEGMIVAANQAKTPVFGAATSYV 231 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHGG--GCSEEEECSCHHHHTT--HHHHHHHHHHTTCCEEESSHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHHHhc--cCCEEEECCcHhHHHH--HHHHHHHHHHcCCCEEECCHHHH
Confidence 3456677788888988754432 22344555543 6899999876543221 12344443447898888876554
Q ss_pred ec
Q psy17626 94 WD 95 (184)
Q Consensus 94 ~~ 95 (184)
-.
T Consensus 232 ~~ 233 (302)
T 2qh8_A 232 ER 233 (302)
T ss_dssp HT
T ss_pred hC
Confidence 43
No 389
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=27.53 E-value=1.1e+02 Score=19.55 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEE--CChHHHHHHHHHHcCcc
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQ--GSPISIFQKLKRELNFT 55 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~--g~~~~~l~~l~~~~~~~ 55 (184)
....|.++.+++...|..++.+. .++.+.+.+++++++++
T Consensus 46 ~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~ 87 (153)
T 2l5o_A 46 EMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLP 87 (153)
T ss_dssp HHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCC
Confidence 45567777777776666666555 56667777888877776
No 390
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=27.37 E-value=77 Score=22.65 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCC-eEEEEECChHHHHHHHHHHcCcceEEEe
Q psy17626 19 CLADLDRQLKSHGG-QLFIVQGSPISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 19 sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 60 (184)
.+....+..++.|. .+.++.|+..+.++.......++.|+++
T Consensus 70 ~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 70 GVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp HHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 44555556666665 5889999999888876666678889887
No 391
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=27.29 E-value=1.5e+02 Score=20.20 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECC--------hHHHHHHHH-HHcCcc
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGS--------PISIFQKLK-RELNFT 55 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~--------~~~~l~~l~-~~~~~~ 55 (184)
....|.++.+++.+.|..++.+.-+ ..+.+.+++ ++++++
T Consensus 66 ~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 114 (190)
T 2vup_A 66 GYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAE 114 (190)
T ss_dssp HHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCC
Confidence 3455666666666666666655432 345566666 555554
No 392
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=27.12 E-value=82 Score=17.30 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHH
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE 51 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~ 51 (184)
.+.+|++.|+++|.+. .|.-.+.+.+|.+.
T Consensus 9 tV~eLK~~Lk~RGL~~---~G~KadLieRL~~~ 38 (51)
T 1h1j_S 9 TVVQLKDLLTKRNLSV---GGLKNELVQRLIKD 38 (51)
T ss_dssp CHHHHHHHHHHTTCCC---CSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCC---CCcHHHHHHHHHHH
Confidence 3678999999999763 68877777777654
No 393
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=27.04 E-value=1.6e+02 Score=20.55 Aligned_cols=56 Identities=9% Similarity=0.160 Sum_probs=33.5
Q ss_pred cCCeEEEEECChHHHHHHHHHHcCcceEEEeec-ccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 30 HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD-CEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 30 ~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~-~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.|..|++-.-.-......++ ..+|..|++-.+ |... ..... -.+.|++.||++..+
T Consensus 96 ~g~tlYvTlePC~~Ca~aIi-~agI~rVVy~~~~~~d~-~~~~~-~~~~L~~aGI~V~~~ 152 (178)
T 2w4l_A 96 KGCSMYVALFPCNECAKLII-QAGIKEVIFMSDKYHDS-DEATA-ARLLFNMAGVTFRKF 152 (178)
T ss_dssp TTCEEEEEECCCHHHHHHHH-HTTCCEEEEEECTTTTS-HHHHH-HHHHHHHHTCEEEEC
T ss_pred cccEEEEeCCcHHHHHHHHH-HHCCCEEEEEeccCCCC-cchHH-HHHHHHHCCCEEEEc
Confidence 37778874433334444444 459999998764 4211 11111 256788889999874
No 394
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=27.01 E-value=1.3e+02 Score=21.01 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeE
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL 175 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v 175 (184)
-+.+.-+++.+.|..+.+..+...+...+++.+.||..|
T Consensus 66 ~l~~~v~kI~~~g~nVVl~~k~I~d~a~~~l~k~gI~~v 104 (178)
T 1gml_A 66 YIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAI 104 (178)
T ss_dssp HHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhhcCCcEEEECCcccHHHHHHHHHCCCEEE
Confidence 355566677788999888888887877788888888766
No 395
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=27.00 E-value=2.2e+02 Score=25.56 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 22 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
+.-+.|++.|++..++.||....-..++++.++.
T Consensus 542 ~aI~~l~~aGI~v~MiTGD~~~TA~aIA~~lGI~ 575 (920)
T 1mhs_A 542 KTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLG 575 (920)
T ss_dssp HHHHHHHHHTCEEEEEESSCHHHHHHHHHHHTSS
T ss_pred HHHHHHhhcCceEEEEcCCCHHHHHHHHHHcCCC
Confidence 3345566779999999999999999999999986
No 396
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=26.95 E-value=1.9e+02 Score=22.58 Aligned_cols=77 Identities=14% Similarity=0.200 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEECC-h------HHHHHHHHHHcCcceEEEee-cccchhHHHHHHHHHHHHhCCCe-EEEe
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQGS-P------ISIFQKLKRELNFTKLCFEQ-DCEALWHKRDKKVKKWCAENNIT-VKEF 88 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g~-~------~~~l~~l~~~~~~~~v~~~~-~~~~~~~~rd~~v~~~l~~~gi~-~~~~ 88 (184)
.++.+|.+.++++|.+..|+.|+ . .+.+.+..++.+++.+.+.. +..|....-+ ++.+.+.+.++. +..+
T Consensus 27 g~~~~l~~~l~~~g~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~-~~~~~~~~~~~d~IIav 105 (371)
T 1o2d_A 27 KILEKRGNIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVM-KAVERYRNDSFDFVVGL 105 (371)
T ss_dssp THHHHHGGGGGGTCSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHH-HHHHHHTTSCCSEEEEE
T ss_pred CHHHHHHHHHHHcCCEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHH-HHHHHHHhcCCCEEEEe
Confidence 35667777777778777777665 3 23444445556666554542 2223333333 444444444554 3445
Q ss_pred cCceeec
Q psy17626 89 VSHTLWD 95 (184)
Q Consensus 89 ~~~~L~~ 95 (184)
.+....|
T Consensus 106 GGGsv~D 112 (371)
T 1o2d_A 106 GGGSPMD 112 (371)
T ss_dssp ESHHHHH
T ss_pred CChHHHH
Confidence 5544433
No 397
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=26.93 E-value=2e+02 Score=21.65 Aligned_cols=54 Identities=9% Similarity=0.172 Sum_probs=37.0
Q ss_pred eEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 33 QLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 33 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
+..+..| ...+..+++.-.+.-|+...|.+|.+... .+-..|++.||++..+.+
T Consensus 122 p~~lk~G--vneVtKaIekgKAqLVVIA~DvdPielv~--~LPaLCee~~VPY~~V~s 175 (255)
T 4a17_F 122 PIVLKYG--LNHITTLIENKQAKLVVIAHDVDPIELVI--FLPQLCRKNDVPFAFVKG 175 (255)
T ss_dssp CCCEEEC--HHHHHHHHHTSCCSEEEEESCCSSTHHHH--HHHHHHHHTTCCEEEESC
T ss_pred Cceeecc--hHHHHHHHHcCCceEEEEeCCCChHHHHH--HHHHHHHHcCCCEEEECC
Confidence 3555555 33455667777888888888887765443 466777888888877664
No 398
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=26.89 E-value=2.2e+02 Score=21.98 Aligned_cols=51 Identities=6% Similarity=-0.089 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCeEEEEeC-------------ChhHHHHHHHHHcCcCeEEEcccc
Q psy17626 131 FRFLLECLADLDRQLKSHGGQLFIVQG-------------SPISIFQKLKRELNFTKLCFEQDC 181 (184)
Q Consensus 131 ~~fl~~~L~~L~~~L~~~g~~L~v~~g-------------~~~~~l~~l~~~~~~~~v~~n~~~ 181 (184)
+..+.+.|..+....++.|+.|.+-.- +..+.+.+++++.+-..|-++-|.
T Consensus 193 ~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~~~g~~~~~~t~~~~~~l~~~v~~~~vgl~~D~ 256 (367)
T 1tz9_A 193 VENLRYFLERVIPVCEEENIKMGIHPDDPPWEIFGLPRITKNLADLKRILSLVDSPANGITFCT 256 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEECCCSSSSCBTTBCCCTTSHHHHHHHHHHTCSTTEECCEET
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEECCCcccccCCCcccCCHHHHHHHHHhcCCCCEEEEEec
Confidence 456778888888888899998877432 234567788888887777666554
No 399
>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A
Probab=26.80 E-value=1.2e+02 Score=20.54 Aligned_cols=11 Identities=9% Similarity=0.293 Sum_probs=4.9
Q ss_pred hHHHHHHHHHH
Q psy17626 41 PISIFQKLKRE 51 (184)
Q Consensus 41 ~~~~l~~l~~~ 51 (184)
..+.|..|.+.
T Consensus 74 ~~~~l~~l~~~ 84 (206)
T 1rku_A 74 AVEFVDWLRER 84 (206)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 34444444443
No 400
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Probab=26.79 E-value=1.5e+02 Score=21.42 Aligned_cols=63 Identities=5% Similarity=0.034 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCc----ceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----TKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
.+.++=+.|++ |.++.|+.+.+.......++..++ +.|+...+... .+---+-+...+++.|+
T Consensus 125 g~~~~L~~L~~-~~~l~i~Tn~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~-~KP~p~~~~~~~~~~~~ 191 (260)
T 2gfh_A 125 DVKAMLTELRK-EVRLLLLTNGDRQTQREKIEACACQSYFDAIVIGGEQKE-EKPAPSIFYHCCDLLGV 191 (260)
T ss_dssp HHHHHHHHHHT-TSEEEEEECSCHHHHHHHHHHHTCGGGCSEEEEGGGSSS-CTTCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHc-CCcEEEEECcChHHHHHHHHhcCHHhhhheEEecCCCCC-CCCCHHHHHHHHHHcCC
Confidence 34444555655 577888877776666666666664 34555444321 11111234444555454
No 401
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=26.69 E-value=1.3e+02 Score=22.62 Aligned_cols=53 Identities=11% Similarity=0.055 Sum_probs=42.0
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHH--HHHHHHHHc-CcceEE
Q psy17626 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPIS--IFQKLKREL-NFTKLC 58 (184)
Q Consensus 6 ~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~-~~~~v~ 58 (184)
.+.|.+.+..+.+-+.+.-+.|.+.|..++|+-.|... .+..+.+.+ ++--|-
T Consensus 44 ~PYG~~~~~~i~~~~~~~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 44 IPYGTKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 45677888888888888899999999999999888765 567777777 555443
No 402
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=26.65 E-value=1.5e+02 Score=20.14 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCC--------hhHHHHHHH-HHcCcC
Q psy17626 134 LLECLADLDRQLKSHGGQLFIVQGS--------PISIFQKLK-RELNFT 173 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~~g~--------~~~~l~~l~-~~~~~~ 173 (184)
....|.++.+++.+.|+.++.+.-+ ..+.+.+++ ++++++
T Consensus 66 ~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 114 (190)
T 2vup_A 66 GYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAE 114 (190)
T ss_dssp HHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCC
Confidence 3566788888888888888877643 566788888 777654
No 403
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=26.62 E-value=1.3e+02 Score=19.43 Aligned_cols=43 Identities=12% Similarity=0.001 Sum_probs=26.4
Q ss_pred HHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 46 QKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 46 ~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
.+.++.-.+.-|+...|.+|.+.. ..+...|++.||++..+.+
T Consensus 29 ~kai~~gkakLViiA~D~~~~~~~--~~l~~lc~~~~VP~~~v~s 71 (121)
T 2lbw_A 29 VKALRKGEKGLVVIAGDIWPADVI--SHIPVLCEDHSVPYIFIPS 71 (121)
T ss_dssp HHHHHHSCCCEEEECTTCSCTTHH--HHHHHHHHHTCCCEEECCC
T ss_pred HHHHHcCCceEEEEeCCCCHHHHH--HHHHHHHHhcCCcEEEECC
Confidence 344455677777777777764322 2455666777777766543
No 404
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=26.62 E-value=42 Score=22.13 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
..|.++.+++.+.|+.++.+.-+..+.+.+++++++++
T Consensus 57 ~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 94 (160)
T 1xvw_A 57 DQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFT 94 (160)
T ss_dssp HHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCC
Confidence 34555555555556666666666666677777776654
No 405
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=26.57 E-value=1.8e+02 Score=20.95 Aligned_cols=18 Identities=50% Similarity=0.678 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhCCCeEEE
Q psy17626 137 CLADLDRQLKSHGGQLFI 154 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v 154 (184)
+|..+.+.+++.|+.+.+
T Consensus 113 ~l~~l~~~a~~~Gv~l~l 130 (264)
T 1yx1_A 113 DLAALGRRLARHGLQLLV 130 (264)
T ss_dssp CHHHHHHHHTTSSCEEEE
T ss_pred HHHHHHHHHHhcCCEEEE
Confidence 444455555555555544
No 406
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=26.51 E-value=2.1e+02 Score=21.56 Aligned_cols=40 Identities=10% Similarity=0.003 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCeEEEEEC-ChHHHHHHHHHHcCcceEEE
Q psy17626 20 LADLDRQLKSHGGQLFIVQG-SPISIFQKLKRELNFTKLCF 59 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~~~~~~v~~ 59 (184)
|.+|.+.+++.|++.++..- .+......++++.++..++.
T Consensus 226 l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l 266 (291)
T 1pq4_A 226 LKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAGVELL 266 (291)
T ss_dssp HHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEE
Confidence 34444444444444444332 12233344444444444443
No 407
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Probab=26.42 E-value=75 Score=22.10 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=21.2
Q ss_pred HHHHhCCCeEEEEeCChhHHHHHHHHHcCc
Q psy17626 143 RQLKSHGGQLFIVQGSPISIFQKLKRELNF 172 (184)
Q Consensus 143 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 172 (184)
+.|++.|.++.++.+.+...+..+.+..++
T Consensus 105 ~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l 134 (232)
T 1zrn_A 105 RELKRRGLKLAILSNGSPQSIDAVVSHAGL 134 (232)
T ss_dssp HHHHHTTCEEEEEESSCHHHHHHHHHHTTC
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHHhcCh
Confidence 445666888888887777666667777665
No 408
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}
Probab=26.37 E-value=1.2e+02 Score=21.04 Aligned_cols=37 Identities=8% Similarity=0.063 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCe-EEEEECChHHHHHHHHHHcCc
Q psy17626 18 ECLADLDRQLKSHGGQ-LFIVQGSPISIFQKLKRELNF 54 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~ 54 (184)
.++.+...+++++|.. ++.+.-+......+++++.++
T Consensus 63 ~~f~~~~~ef~~~gv~~VigIS~D~~~~~~~w~~~~~~ 100 (171)
T 2xhf_A 63 PEYLSLYDKFKEEGYHTIACIAVNDPFVMAAWGKTVDP 100 (171)
T ss_dssp HHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCC
Confidence 3566677778888996 888888999999999998887
No 409
>3r3p_A MobIle intron protein; homing endonuclease, hydrolase; 2.20A {Bacillus phage 0305phi8-36}
Probab=26.32 E-value=45 Score=21.30 Aligned_cols=34 Identities=18% Similarity=0.048 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHhCCCeEEEecCceeeccccc
Q psy17626 66 LWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99 (184)
Q Consensus 66 ~~~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i 99 (184)
...++|....+.|++.|..+..|+.+-+-+++.+
T Consensus 56 ~~~~rD~~r~~~L~~~Gw~Vlr~~~~~v~~~~~v 89 (105)
T 3r3p_A 56 KNVNKDKRKLSELHSKGYRVLTIEDDELNDIDKV 89 (105)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEGGGGGGHHHH
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeHHHhCCHHHH
Confidence 4578898889999999999999887766444433
No 410
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=26.27 E-value=87 Score=20.35 Aligned_cols=40 Identities=8% Similarity=0.037 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEe-------CChhHHHHHHHHHcCcC
Q psy17626 134 LLECLADLDRQLKSHGGQLFIVQ-------GSPISIFQKLKRELNFT 173 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~~-------g~~~~~l~~l~~~~~~~ 173 (184)
+...|.++.+++...|+.++.+. .+..+.+.+++++++++
T Consensus 49 ~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (160)
T 3lor_A 49 GVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIK 95 (160)
T ss_dssp HHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCC
Confidence 34567777777776677766665 25677788888888765
No 411
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=26.22 E-value=88 Score=20.33 Aligned_cols=39 Identities=3% Similarity=0.019 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEe-------CChhHHHHHHHHHcCcC
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQ-------GSPISIFQKLKRELNFT 173 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~-------g~~~~~l~~l~~~~~~~ 173 (184)
...|.++.+++...|..++.+. .+..+.+.+++++++++
T Consensus 48 ~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (158)
T 3eyt_A 48 IPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIK 93 (158)
T ss_dssp HHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCC
Confidence 3556677777765666666665 45677788888888765
No 412
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=26.18 E-value=2e+02 Score=21.36 Aligned_cols=71 Identities=10% Similarity=-0.059 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHH--cCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecCce
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRE--LNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHT 92 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~--~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~ 92 (184)
...+++.+.+.|+.+..........+....+. -+++.||...|... ....+.+.....+.++++...++..
T Consensus 158 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d~~~--~~~~~~i~~~~~~~~iPv~~~~~~~ 230 (302)
T 3lkv_A 158 MELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNTV--ASAIEGMIVAANQAKTPVFGAATSY 230 (302)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECSCHHH--HHTHHHHHHHHHHTTCCEEESSHHH
T ss_pred HHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeCCcch--hhHHHHHHHHHhhcCCceeeccccc
Confidence 34556667777888877654333333333322 25777887665432 2334456666677888888766543
No 413
>2ipq_X Hypothetical protein STY4665; structural genomics, unknown function, PSI, protein structur initiative; 2.20A {Salmonella typhi} SCOP: a.4.5.74
Probab=26.15 E-value=28 Score=23.57 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=47.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHhcCCeEEEEECC----hHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCC
Q psy17626 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGS----PISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNI 83 (184)
Q Consensus 8 ~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~----~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi 83 (184)
.|..=+.||.++|.+=+-..++.+..++++.|- .+.++.+++++++...- . .....+..+.|++.+++.|+
T Consensus 7 ~Ge~Fl~WLk~gi~~~~L~iN~~~A~VH~V~g~vfLvsP~IF~~Y~~e~~~~~~---~--~~~~~~~~~~vQk~FEkL~l 81 (135)
T 2ipq_X 7 LGDLFWSWLRDGLREGDIPVNTADACVHLTCGFVFISVPGVFFLFLKSHSRSCS---S--GLKESGRKEQVQAAFEKMRK 81 (135)
T ss_dssp HHHHHHHHHHHHHHTTCSCBSSTTCSEEEETTEEEEETTHHHHHHHHHC----------------CHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHhhhhcCceeecCCCCeEEEECCEEEEEChHHHHHHHHHcCcccc---c--cccchhHHHHHHHHHHHhcc
Confidence 456667899999987766777778899999874 56899999999865322 1 11222334578888887665
Q ss_pred e
Q psy17626 84 T 84 (184)
Q Consensus 84 ~ 84 (184)
.
T Consensus 82 H 82 (135)
T 2ipq_X 82 H 82 (135)
T ss_dssp S
T ss_pred c
Confidence 4
No 414
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=26.14 E-value=1e+02 Score=20.21 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=18.4
Q ss_pred ecccchh--HHHHHHHHHHHHhCCCeEEEec
Q psy17626 61 QDCEALW--HKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 61 ~~~~~~~--~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
...+|+. +++..+++.+|+++||++..++
T Consensus 7 t~~c~~c~~kk~c~~aK~lL~~kgV~feEid 37 (121)
T 1u6t_A 7 ASSSGSTAIKKKQQDVLGFLEANKIGFEEKD 37 (121)
T ss_dssp CTTCSCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCCccchHHHHHHHHHHHHCCCceEEEE
Confidence 4455553 4555677777888888776543
No 415
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=26.08 E-value=84 Score=19.66 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCcceEEEeec-----ccchhHHHHHHHHHHHHhCCCeEEE
Q psy17626 43 SIFQKLKRELNFTKLCFEQD-----CEALWHKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 43 ~~l~~l~~~~~~~~v~~~~~-----~~~~~~~rd~~v~~~l~~~gi~~~~ 87 (184)
+.+.++++...+ +++... .+|+.. +++++|++.||++..
T Consensus 9 ~~v~~~i~~~~V--vvy~k~t~~~p~Cp~C~----~ak~~L~~~gi~~~~ 52 (109)
T 3ipz_A 9 DTLEKLVNSEKV--VLFMKGTRDFPMCGFSN----TVVQILKNLNVPFED 52 (109)
T ss_dssp HHHHHHHTSSSE--EEEESBCSSSBSSHHHH----HHHHHHHHTTCCCEE
T ss_pred HHHHHHHccCCE--EEEEecCCCCCCChhHH----HHHHHHHHcCCCcEE
Confidence 345555555444 344443 455543 345566667776554
No 416
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=26.06 E-value=99 Score=20.63 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCeEEEEeCChh-----HHHHHHHHHcCcCeEEE
Q psy17626 139 ADLDRQLKSHGGQLFIVQGSPI-----SIFQKLKRELNFTKLCF 177 (184)
Q Consensus 139 ~~L~~~L~~~g~~L~v~~g~~~-----~~l~~l~~~~~~~~v~~ 177 (184)
.+..+.++.....|.|+.+|+. .-|+.+|++++|.-+++
T Consensus 38 ~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v 81 (134)
T 2ale_A 38 NEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFV 81 (134)
T ss_dssp HHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEE
T ss_pred hHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3344455554567887765443 35888999999987765
No 417
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=26.01 E-value=1.9e+02 Score=22.07 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHh-----cCCeEEEEECChHHHHHHHHHHcCcceEEEeec--ccchhHHHHHHHHHHHHhCC
Q psy17626 10 YNRFRFLLECLADLDRQLKS-----HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD--CEALWHKRDKKVKKWCAENN 82 (184)
Q Consensus 10 ~~r~~fl~~sL~~L~~~L~~-----~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~--~~~~~~~rd~~v~~~l~~~g 82 (184)
..+..=+.+.|.+|++++++ .+..+++.+. .+..|++.+|++.+..... -....-++-..+.+.+++.+
T Consensus 164 ~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~----af~Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~ 239 (312)
T 2o1e_A 164 EKNSKEYIAKLQDLDKLYRTTAKKAEKKEFITQHT----AFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHN 239 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSCCEEEESSC----TTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEECC----chHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcC
Q ss_pred CeEEEecCce
Q psy17626 83 ITVKEFVSHT 92 (184)
Q Consensus 83 i~~~~~~~~~ 92 (184)
|++..++...
T Consensus 240 v~~If~e~~~ 249 (312)
T 2o1e_A 240 VKVIYFEEIA 249 (312)
T ss_dssp CCEEECSSCC
T ss_pred CCEEEEeCCC
No 418
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=25.95 E-value=1.6e+02 Score=19.97 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeC--------ChhHHHHHHHHHcCcC
Q psy17626 134 LLECLADLDRQLKSHGGQLFIVQG--------SPISIFQKLKRELNFT 173 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~~~~~ 173 (184)
....|.++.+++.+.|..++.+.- +..+.+.+++++++++
T Consensus 64 ~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~ 111 (196)
T 2ywi_A 64 VQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYP 111 (196)
T ss_dssp HHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCC
Confidence 345577788888877888777764 4566777777777654
No 419
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=25.93 E-value=1.3e+02 Score=18.85 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=27.9
Q ss_pred HHHHHHHHHhc--CCeEEEEECChH--HHHHHHHHHcCcceEEEe
Q psy17626 20 LADLDRQLKSH--GGQLFIVQGSPI--SIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 20 L~~L~~~L~~~--g~~L~v~~g~~~--~~l~~l~~~~~~~~v~~~ 60 (184)
+...++.|+++ |..|.|+..++. +-|+++|++.|-.-+...
T Consensus 40 vl~tkkaL~~l~~Ge~L~Vl~dd~~a~~dI~~~~~~~G~~v~~~e 84 (98)
T 1jdq_A 40 DVETKRALQNMKPGEILEVWIDYPMSKERIPETVKKLGHEVLEIE 84 (98)
T ss_dssp HHHHHHHHHTCCTTCEEEEEESSCTHHHHHHHHHHHSSCCEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 34556666665 556888876554 778899988887665554
No 420
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=25.91 E-value=1.1e+02 Score=18.22 Aligned_cols=42 Identities=12% Similarity=0.194 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhC--CCeEEEEeCChh--HHHHHHHHHcCcCeEEEc
Q psy17626 137 CLADLDRQLKSH--GGQLFIVQGSPI--SIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 137 ~L~~L~~~L~~~--g~~L~v~~g~~~--~~l~~l~~~~~~~~v~~n 178 (184)
.+-.+.+.|+++ |..|.|+..++. .-++++|++.|-+-+...
T Consensus 23 Pvl~~kkal~~l~~G~~l~V~~dd~~a~~di~~~~~~~G~~~~~~~ 68 (82)
T 3lvj_C 23 PVMMVRKTVRNMQPGETLLIIADDPATTRDIPGFCTFMEHELVAKE 68 (82)
T ss_dssp HHHHHHHHHHTSCTTCEEEEEECCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 355566667665 667888876554 469999999988766553
No 421
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=25.89 E-value=1.9e+02 Score=20.80 Aligned_cols=70 Identities=7% Similarity=-0.026 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEEC--C----------hHHHHHHHHHHcCcceEEEeecccch---h---HHHHHHHHHHHH
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQG--S----------PISIFQKLKRELNFTKLCFEQDCEAL---W---HKRDKKVKKWCA 79 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g--~----------~~~~l~~l~~~~~~~~v~~~~~~~~~---~---~~rd~~v~~~l~ 79 (184)
..+.++++.+++.|+.+..++. . -.....+++++.++..|.++-..... . .+.-..+.+.++
T Consensus 51 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~ 130 (272)
T 2q02_A 51 LNYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFA 130 (272)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCeEEechhhhccCCcHHHHHHHHHHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999866553 1 12235556778899999875432211 1 222244455566
Q ss_pred hCCCeEEE
Q psy17626 80 ENNITVKE 87 (184)
Q Consensus 80 ~~gi~~~~ 87 (184)
+.||.+-.
T Consensus 131 ~~gv~l~~ 138 (272)
T 2q02_A 131 RYDIQGLV 138 (272)
T ss_dssp TTTCEEEE
T ss_pred HcCCEEEE
Confidence 78887643
No 422
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=25.81 E-value=49 Score=20.44 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhcCCeEEEE
Q psy17626 18 ECLADLDRQLKSHGGQLFIV 37 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~ 37 (184)
..|..+.+.+++.|+.|.+.
T Consensus 63 ~~L~~~~~~~~~~g~~l~l~ 82 (99)
T 3oiz_A 63 QALDMAVLKFRREGAEVRIV 82 (99)
T ss_dssp HHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEE
Confidence 44556666666666666655
No 423
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=25.80 E-value=1.2e+02 Score=18.77 Aligned_cols=40 Identities=23% Similarity=0.197 Sum_probs=27.6
Q ss_pred HHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEe
Q psy17626 46 QKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEF 88 (184)
Q Consensus 46 ~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 88 (184)
.+.++.-.+.-|+...|..+... ..+...|+..+|++..+
T Consensus 27 ~kai~~gka~lViiA~D~~~~~~---~~i~~~c~~~~ip~~~~ 66 (101)
T 3on1_A 27 VKAVQNGQVTLVILSSDAGIHTK---KKLLDKCGSYQIPVKVV 66 (101)
T ss_dssp HHHHHTTCCSEEEEETTSCHHHH---HHHHHHHHHHTCCEEEE
T ss_pred HHHHHcCCCcEEEEeCCCCHHHH---HHHHHHHHHcCCCEEEe
Confidence 34455667888888888877532 35667777778887754
No 424
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=25.78 E-value=91 Score=23.56 Aligned_cols=52 Identities=10% Similarity=0.150 Sum_probs=40.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChHH--HHHHHHHHcCcceE
Q psy17626 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPIS--IFQKLKRELNFTKL 57 (184)
Q Consensus 6 ~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~~~~~v 57 (184)
-+.|.+.+..+.+-+.+.-+.|.+.|..++|+-.|... .+..+.+.+++--|
T Consensus 61 ~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvi 114 (274)
T 3uhf_A 61 VPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVY 114 (274)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEE
Confidence 35678888888888888889999999999999888766 36777776655433
No 425
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=25.67 E-value=75 Score=20.95 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHH-cCcceEEEeeccc
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE-LNFTKLCFEQDCE 64 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~-~~~~~v~~~~~~~ 64 (184)
.+...++.++..|.+..+..++..+.++.+... ..++.|+++..+.
T Consensus 75 ~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~ 121 (171)
T 1ws6_A 75 AVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA 121 (171)
T ss_dssp HHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred HHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc
Confidence 344445555555657888899998877665442 2578899886554
No 426
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=25.65 E-value=2.3e+02 Score=21.76 Aligned_cols=70 Identities=20% Similarity=0.192 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhc-------CCeEEEEECChHHHHHHHHHHcCcceEEEee---cccchhHHHHHHHHHHHHhCCCe
Q psy17626 15 FLLECLADLDRQLKSH-------GGQLFIVQGSPISIFQKLKRELNFTKLCFEQ---DCEALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~-------g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~---~~~~~~~~rd~~v~~~l~~~gi~ 84 (184)
=+.+.|.+|++++++. +-.+++.+ +.+..|++.+|.+.+.... +-+|. -++-..+.+.+++.+|+
T Consensus 181 ~~~~~L~~Ld~~~~~~l~~~~~~~r~~v~~H----~af~Yfa~~yGL~~~~~~~~~~~~eps-~~~l~~l~~~ik~~~v~ 255 (321)
T 1xvl_A 181 VYSEQLKAIDRQLGADLEQVPANQRFLVSCE----GAFSYLARDYGMEEIYMWPINAEQQFT-PKQVQTVIEEVKTNNVP 255 (321)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCGGGCEEEEEE----STTHHHHHHTTCEEEEEESSSSSCSCC-HHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHHHHhhCcccCCEEEEEC----chHHHHHHHCCCeEEEeeccCCCCCCC-HHHHHHHHHHHHHcCCc
Confidence 3556677777765532 33455543 3467888999998776531 22333 33345777777888888
Q ss_pred EEEec
Q psy17626 85 VKEFV 89 (184)
Q Consensus 85 ~~~~~ 89 (184)
+..++
T Consensus 256 ~If~e 260 (321)
T 1xvl_A 256 TIFCE 260 (321)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77554
No 427
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=25.64 E-value=1.3e+02 Score=18.79 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=29.2
Q ss_pred HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 45 FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 45 l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
..+.++.-.+.-|+...|..+... ..+...|+..+|++..+.
T Consensus 27 v~kai~~gka~lViiA~D~~~~~~---~~i~~~c~~~~vp~~~~~ 68 (101)
T 3v7q_A 27 VIKEIRNARAKLVLLTEDASSNTA---KKVTDKCNYYKVPYKKVE 68 (101)
T ss_dssp HHHHHHTTCCSEEEEETTSCHHHH---HHHHHHHHHTTCCEEEES
T ss_pred hHHHHhcCceeEEEEeccccccch---hhhcccccccCCCeeeec
Confidence 344556677888888888877632 245667788889887653
No 428
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13
Probab=25.55 E-value=68 Score=25.56 Aligned_cols=39 Identities=23% Similarity=0.186 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
...+.++=+.|++.|+++.|+.+.+...+....+.+|+.
T Consensus 217 ~pGv~elL~~Lk~~Gi~laIvTn~~~~~~~~~L~~lgL~ 255 (384)
T 1qyi_A 217 VDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLL 255 (384)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCG
T ss_pred CcCHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcCCh
Confidence 455666777788889999999998887777777888865
No 429
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=25.52 E-value=1.5e+02 Score=24.05 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=36.6
Q ss_pred CCeEEE-EECChH-HHHHHHHHH------cCcceEEEeeccc-chhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 31 GGQLFI-VQGSPI-SIFQKLKRE------LNFTKLCFEQDCE-ALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 31 g~~L~v-~~g~~~-~~l~~l~~~------~~~~~v~~~~~~~-~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
|.++.| +.|.+. .++..++.+ +.+..|++|.... +......+.+++.|++.||+++...
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v~~ 85 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETAQ 85 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEEEE
Confidence 445444 466554 355555554 3566677776554 3334445678889999999987654
No 430
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=25.50 E-value=2.5e+02 Score=23.26 Aligned_cols=77 Identities=6% Similarity=0.085 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECChH-HHHHHHHHHc---CcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQGSPI-SIFQKLKREL---NFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g~~~-~~l~~l~~~~---~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.|+.+.+..+++.+.. +.-+.-+.|-.. .++..++.+. ++..|+++..... ..+.++.++..+++.||+++..+
T Consensus 215 ~~~~~~i~~i~~~v~~-~kvlvalSGGvDSsvla~ll~~~~G~~v~av~vd~g~~~-~~e~~~~~~~~a~~lgi~~~vv~ 292 (527)
T 3tqi_A 215 HIIEDSIRDIQEKVGK-EQVIVGLSGGVDSAVTATLVHKAIGDQLVCVLVDTGLLR-LNEVDEVLNVFQKHLGAKVICVD 292 (527)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEECTTTHHHHHHHHHHHHHHGGGEEEEEECCSCSC-TTHHHHHHHHHTTSSCCEEEEEC
T ss_pred HHHHHHHHHHHHhcCC-CeEEEEEecCcCHHHHHHHHHHHhCCeEEEEEeccCCCC-hhHHHHHHHHHHHHcCCcEEEEe
Confidence 4667777777777754 333555567553 3555555543 5667777654432 22333333447778899988776
Q ss_pred Cce
Q psy17626 90 SHT 92 (184)
Q Consensus 90 ~~~ 92 (184)
-..
T Consensus 293 ~~~ 295 (527)
T 3tqi_A 293 AKD 295 (527)
T ss_dssp CHH
T ss_pred ChH
Confidence 543
No 431
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=25.47 E-value=1.5e+02 Score=23.39 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=38.9
Q ss_pred HHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHH-HHHHHHHHHhCCCeEEEecCc
Q psy17626 26 QLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR-DKKVKKWCAENNITVKEFVSH 91 (184)
Q Consensus 26 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~r-d~~v~~~l~~~gi~~~~~~~~ 91 (184)
-+...|.....+..+..+.|.+.++. +...|+.+.-..|..... -+.+.+++++.|+.+..-+.+
T Consensus 140 ~~~~~g~~~~~v~~~d~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~ 205 (414)
T 3ndn_A 140 ILPRWGVQTVFVDGDDLSQWERALSV-PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVF 205 (414)
T ss_dssp HHHHTTCEEEEECTTCHHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHHHcCcEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCC
Confidence 34557888777765555556655543 456677654433432222 357788888888877765443
No 432
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=25.40 E-value=1.6e+02 Score=19.77 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhCCC------eEEEEeCC--hhHHHHHHHHHcCcC
Q psy17626 134 LLECLADLDRQLKSHGG------QLFIVQGS--PISIFQKLKRELNFT 173 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~------~L~v~~g~--~~~~l~~l~~~~~~~ 173 (184)
....|.++.+++.+.|. .++.+.-+ ..+.+.+++++++++
T Consensus 77 ~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~ 124 (183)
T 3lwa_A 77 ESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLD 124 (183)
T ss_dssp HHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 34568888889998888 77777644 377889999888764
No 433
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=25.37 E-value=90 Score=21.78 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQG 39 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g 39 (184)
-..+.|.+++++|.+.|+.|.+-..
T Consensus 85 ~Q~~~L~~ik~sL~~~gI~l~~~fs 109 (163)
T 4a5z_A 85 QQSRGLQEIEESLRSHGVLLEVQYS 109 (163)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3456777777777777777776653
No 434
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=25.37 E-value=1.1e+02 Score=21.65 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeC--------ChhHHHHHHHHHcCcCe
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQG--------SPISIFQKLKRELNFTK 174 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~~~~~~ 174 (184)
...|.+|.+++.+.|..++.+.- +..+.+.+++++++++-
T Consensus 78 ~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~ 125 (218)
T 3u5r_E 78 REALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGF 125 (218)
T ss_dssp HHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCc
Confidence 45688888888888877776664 56777888888877643
No 435
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=25.35 E-value=1.1e+02 Score=22.22 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=23.3
Q ss_pred HHHHhcCCeEEEEE---CChHHHHHHHHHHcCcc
Q psy17626 25 RQLKSHGGQLFIVQ---GSPISIFQKLKRELNFT 55 (184)
Q Consensus 25 ~~L~~~g~~L~v~~---g~~~~~l~~l~~~~~~~ 55 (184)
+.|++.|+++.+.. |.+...+...+++.++.
T Consensus 31 ~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~ 64 (264)
T 3epr_A 31 ERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVE 64 (264)
T ss_dssp HHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCC
T ss_pred HHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 34556699999999 77777777777777764
No 436
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=25.28 E-value=1.3e+02 Score=20.45 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCC--eEEEEECChHHHHHHHHHHcCcceEEEe
Q psy17626 18 ECLADLDRQLKSHGG--QLFIVQGSPISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 60 (184)
..+.++-+.|++.|. ..+++=|.+...-...+++.+++.+|..
T Consensus 84 ~~~~~~i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~~~ 128 (161)
T 2yxb_A 84 HLMKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIFLP 128 (161)
T ss_dssp HHHHHHHHHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEECT
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEEECC
Confidence 445566666666653 2233446555544455678888877753
No 437
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=25.21 E-value=1.3e+02 Score=19.93 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=35.9
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHH
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWC 78 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l 78 (184)
..|.+.|++- ....+.+..|++.++-..||.-.........|+..+.+.+
T Consensus 41 ~~L~~~Gi~~----~~~ie~~~~L~~~~gG~~iYIPk~~~~~~~~Rn~~I~~~f 90 (129)
T 1rr7_A 41 GELSRLGVDP----AHSLEIVVAICKHLGGGQVYIPRGQALDSLIRDLRIWNDF 90 (129)
T ss_dssp HHHHHTSSCT----TSHHHHHHHHHHHHCSSCCCCCCSHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCH----HHHHHHHHHHHHHHCCeeEEeeCCchHHHHHHHHHHHHHh
Confidence 3677778654 4556888889999999999988765544557777776544
No 438
>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A
Probab=25.21 E-value=1.3e+02 Score=20.51 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEE
Q psy17626 139 ADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 177 (184)
Q Consensus 139 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 177 (184)
.++-+.|.+. .++.++.+.+...+..+++..|+...|.
T Consensus 75 ~~~l~~l~~~-~~~~i~s~~~~~~~~~~l~~~gl~~~f~ 112 (206)
T 1rku_A 75 VEFVDWLRER-FQVVILSDTFYEFSQPLMRQLGFPTLLC 112 (206)
T ss_dssp HHHHHHHHTT-SEEEEEEEEEHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHhc-CcEEEEECChHHHHHHHHHHcCCcceec
Confidence 3444556666 8899998888888888888888887663
No 439
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=25.14 E-value=1.4e+02 Score=20.17 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHc
Q psy17626 134 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 170 (184)
....|.++.+++.+.|..++.+.-++.+.+.++++++
T Consensus 50 ~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~ 86 (187)
T 1we0_A 50 ELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENS 86 (187)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHh
Confidence 3456777788888778888888777777777777766
No 440
>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}
Probab=25.10 E-value=70 Score=22.19 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 138 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 138 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
+.++-+.|++.|.++.++.+.+...+..+.+..++.
T Consensus 104 ~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~ 139 (233)
T 3umb_A 104 NVPVLRQLREMGLPLGILSNGNPQMLEIAVKSAGMS 139 (233)
T ss_dssp HHHHHHHHHTTTCCEEEEESSCHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHHCCcH
Confidence 344455677779999999888877777777777753
No 441
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=25.04 E-value=40 Score=26.30 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCC---eEEEEEC--------ChHHHHHHHHHHcCcceEEEe
Q psy17626 20 LADLDRQLKSHGG---QLFIVQG--------SPISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 20 L~~L~~~L~~~g~---~L~v~~g--------~~~~~l~~l~~~~~~~~v~~~ 60 (184)
..+++++|+.+|. .|+.++. +..+.+.+|.++-.|.+|-++
T Consensus 138 ~~~~e~SL~rLg~dyiDl~~lH~p~~~~~~~e~~~aL~~l~~~Gkir~iGvS 189 (353)
T 3erp_A 138 IASLDQSLKRMGLEYVDIFYHHRPDPETPLKETMKALDHLVRHGKALYVGIS 189 (353)
T ss_dssp HHHHHHHHHHHTCSCEEEEEECSCCTTSCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHHhCCCeEeEEEecCCCCCCCHHHHHHHHHHHHHCCCccEEEec
Confidence 3456677777774 5777763 123456666666666666555
No 442
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=24.94 E-value=2.2e+02 Score=21.27 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhc-----CCeEEEEECChHHHHHHHHHHcCcceEEEee---cccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 15 FLLECLADLDRQLKSH-----GGQLFIVQGSPISIFQKLKRELNFTKLCFEQ---DCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~-----g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~---~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
=+.+.|.+|++++++. +..+++.+. .+.-|++.+|.+.+.... +-+| .-++-..+.+.+++.+|++.
T Consensus 153 ~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~----af~Yf~~~yGl~~~~~~~~~~~~ep-s~~~l~~l~~~ik~~~v~~i 227 (284)
T 2prs_A 153 DFEAQLASTETQVGNELAPLKGKGYFVFHD----AYGYFEKQFGLTPLGHFTVNPEIQP-GAQRLHEIRTQLVEQKATCV 227 (284)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTTCCEEEEES----CCHHHHHHHTCCCCEEEESSTTSCC-CHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCeEEEECc----cHHHHHHHCCCeEeEeeccCCCCCC-CHHHHHHHHHHHHHcCCCEE
Confidence 3455666666655432 344555433 467889999998776532 2233 33444577778888999887
Q ss_pred EecC
Q psy17626 87 EFVS 90 (184)
Q Consensus 87 ~~~~ 90 (184)
.++.
T Consensus 228 f~e~ 231 (284)
T 2prs_A 228 FAEP 231 (284)
T ss_dssp EECT
T ss_pred EEeC
Confidence 6553
No 443
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=24.76 E-value=3.6e+02 Score=24.25 Aligned_cols=36 Identities=8% Similarity=0.136 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
..+.-+.|++.|++..++.|+.......++++.++.
T Consensus 608 ~~~~I~~l~~~Gi~v~miTGD~~~ta~~ia~~lgi~ 643 (995)
T 3ar4_A 608 VMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 643 (995)
T ss_dssp HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHcCCEEEEECCCCHHHHHHHHHHcCcC
Confidence 344556677889999999999999999999999985
No 444
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=24.72 E-value=2.5e+02 Score=22.23 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=12.7
Q ss_pred HHHHHHHhcCCeEEEEEC
Q psy17626 22 DLDRQLKSHGGQLFIVQG 39 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v~~g 39 (184)
.+-+.++++|...+++..
T Consensus 16 ~~~~a~~~~G~~vv~v~~ 33 (451)
T 1ulz_A 16 RIIRACKELGIPTVAIYN 33 (451)
T ss_dssp HHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHcCCeEEEEec
Confidence 455666777998887754
No 445
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=24.71 E-value=2.6e+02 Score=23.12 Aligned_cols=58 Identities=9% Similarity=0.080 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCC--eEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHH
Q psy17626 19 CLADLDRQLKSHGG--QLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKK 76 (184)
Q Consensus 19 sL~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~ 76 (184)
.+..+-+.+-..|. +..+..|+..+.|.++++-.++..+..+++.+....+++-+..+
T Consensus 434 ~~~~~~~~wi~~G~~HH~~~~~g~~~~~L~~~a~~lgie~~~i~~~~~~~~~~~~~~~~~ 493 (500)
T 4f2d_A 434 DLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNE 493 (500)
T ss_dssp CHHHHHHHHHHTTCCSEEEEESSCCHHHHHHHHHHTTCEEEEESTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCeEEEECCCCHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHH
Confidence 45555555544443 57788899999999999999999999999888776666655443
No 446
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=24.64 E-value=2.1e+02 Score=22.54 Aligned_cols=69 Identities=16% Similarity=0.026 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhc-CCeEEEEEC---ChHHHHHHHHHHcCcceEEEeecc-cchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 19 CLADLDRQLKSH-GGQLFIVQG---SPISIFQKLKRELNFTKLCFEQDC-EALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 19 sL~~L~~~L~~~-g~~L~v~~g---~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
.+.+|.+.+-.. +-+. ..| +-.+.+.+++++++++.|+...-- +...---...+++.+++.||++..++
T Consensus 277 pl~~lA~~yl~~~~c~~--~~~p~~~R~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~giP~l~ie 350 (385)
T 3o3m_B 277 ALERLARQWSNIEGCSL--AYDPKKKRGSLIVDEVKKKDIDGVIFCMMKFCDPEEYDYPLVRKDIEDSGIPTLYVE 350 (385)
T ss_dssp HHHHHHHHHHHCCSCTT--SCCTTCTHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHHhcCCCCcc--ccCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCccHhhHHHHHHHHHHCCCCEEEEE
Confidence 355666666442 1111 112 456778889999999988776443 22222223466777788899987665
No 447
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=24.55 E-value=2.5e+02 Score=21.92 Aligned_cols=75 Identities=8% Similarity=0.053 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcC-CeEEEEECC--------hHHHHHHHHHHcCcceEEEeecccch-hHHHHHHHHHHHHhCCCe-EEE
Q psy17626 19 CLADLDRQLKSHG-GQLFIVQGS--------PISIFQKLKRELNFTKLCFEQDCEAL-WHKRDKKVKKWCAENNIT-VKE 87 (184)
Q Consensus 19 sL~~L~~~L~~~g-~~L~v~~g~--------~~~~l~~l~~~~~~~~v~~~~~~~~~-~~~rd~~v~~~l~~~gi~-~~~ 87 (184)
++.+|.+.++++| .+..|+.+. ..+.+.+.+++.+++.+.+. +.+++ ....-.++.+.+.+.|+. +..
T Consensus 20 ~~~~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~-~~~~~p~~~~v~~~~~~~~~~~~d~IIa 98 (387)
T 3bfj_A 20 AISVVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFD-GVEPNPKDTNVRDGLAVFRREQCDIIVT 98 (387)
T ss_dssp GGGGHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEEC-CCCSSCBHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEEC-CccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4455666666666 566666543 23444455555666654443 22222 222223444555566665 333
Q ss_pred ecCceee
Q psy17626 88 FVSHTLW 94 (184)
Q Consensus 88 ~~~~~L~ 94 (184)
+.+....
T Consensus 99 vGGGsv~ 105 (387)
T 3bfj_A 99 VGGGSPH 105 (387)
T ss_dssp EESHHHH
T ss_pred eCCcchh
Confidence 4454433
No 448
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=24.48 E-value=93 Score=18.61 Aligned_cols=30 Identities=7% Similarity=0.129 Sum_probs=17.1
Q ss_pred EEeecccchh--HHHHHHHHHHHHhCCCeEEE
Q psy17626 58 CFEQDCEALW--HKRDKKVKKWCAENNITVKE 87 (184)
Q Consensus 58 ~~~~~~~~~~--~~rd~~v~~~l~~~gi~~~~ 87 (184)
++....+|+. +.+..+++++|++.||++..
T Consensus 6 ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~ 37 (93)
T 1t1v_A 6 VYSTSVTGSREIKSQQSEVTRILDGKRIQYQL 37 (93)
T ss_dssp EEECSSCSCHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred EEEcCCCCCchhhHHHHHHHHHHHHCCCceEE
Confidence 3445556654 33335666677777776554
No 449
>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6
Probab=24.45 E-value=1.4e+02 Score=20.27 Aligned_cols=30 Identities=27% Similarity=0.140 Sum_probs=16.2
Q ss_pred HHHHHhcCCeEEEEECChHHHHHHHHHHcCc
Q psy17626 24 DRQLKSHGGQLFIVQGSPISIFQKLKRELNF 54 (184)
Q Consensus 24 ~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 54 (184)
-+.|++. .++.|+.+.+...+..+.+..++
T Consensus 92 l~~l~~~-~~~~i~s~~~~~~~~~~l~~~~l 121 (209)
T 2hdo_A 92 FEQLPSE-LRLGIVTSQRRNELESGMRSYPF 121 (209)
T ss_dssp HHHSCTT-SEEEEECSSCHHHHHHHHTTSGG
T ss_pred HHHHHhc-CcEEEEeCCCHHHHHHHHHHcCh
Confidence 3344444 56666666555555555555544
No 450
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=24.45 E-value=2e+02 Score=20.77 Aligned_cols=71 Identities=10% Similarity=-0.036 Sum_probs=38.4
Q ss_pred HHHHHHHHHHh-cCCeEEEEECChHHHHHHHHHHcCcceEEEee-cccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 19 CLADLDRQLKS-HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ-DCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 19 sL~~L~~~L~~-~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~-~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
+|++|-+.+.+ ++..+..+-.++..-..+.++++++.....+. ++. .....|+.+.+.+++.++.+...-+
T Consensus 25 nl~all~~~~~~~~~eI~~Vis~~~a~~~~~A~~~gIp~~~~~~~~~~-~r~~~d~~~~~~l~~~~~Dlivlag 97 (215)
T 3da8_A 25 LLRSLLDAAVGDYPARVVAVGVDRECRAAEIAAEASVPVFTVRLADHP-SRDAWDVAITAATAAHEPDLVVSAG 97 (215)
T ss_dssp HHHHHHHHSSTTCSEEEEEEEESSCCHHHHHHHHTTCCEEECCGGGSS-SHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHHHhccCCCeEEEEEeCCchHHHHHHHHcCCCEEEeCccccc-chhhhhHHHHHHHHhhCCCEEEEcC
Confidence 34444443322 23344333333333456788899998777642 121 1223366778888887777655544
No 451
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=24.32 E-value=1.3e+02 Score=21.34 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=25.1
Q ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHcCcc
Q psy17626 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 55 (184)
++|++.|+++.+..|.+...+..+.+..+.+
T Consensus 30 ~~l~~~G~~v~i~TGR~~~~~~~~~~~l~~~ 60 (231)
T 1wr8_A 30 RRAESLGIPIMLVTGNTVQFAEAASILIGTS 60 (231)
T ss_dssp HHHHHTTCCEEEECSSCHHHHHHHHHHHTCC
T ss_pred HHHHHCCCEEEEEcCCChhHHHHHHHHcCCC
Confidence 3455679999999999988888888877765
No 452
>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}
Probab=24.29 E-value=60 Score=22.81 Aligned_cols=36 Identities=14% Similarity=0.318 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 138 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 138 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
+.++-+.|++.|.++.++.+.....+..+.+..++.
T Consensus 115 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~ 150 (240)
T 3sd7_A 115 MKEILEMLYKNGKILLVATSKPTVFAETILRYFDID 150 (240)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHcCcH
Confidence 334455677779999999887777777788887764
No 453
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=24.27 E-value=1.4e+02 Score=19.26 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=28.5
Q ss_pred HHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 45 FQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 45 l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
..+.++.-.+.-|+...|.+|.+.. ..+...|++.||++..+.
T Consensus 37 v~kai~~gka~lViiA~D~~p~~~~--~~l~~lc~~~~VP~~~v~ 79 (120)
T 1xbi_A 37 VTKAVERGIAKLVIIAEDVKPEEVV--AHLPYLCEEKGIPYAYVA 79 (120)
T ss_dssp HHHHHHHTCCSEEEEESCCSSGGGT--TTHHHHHHHHTCCEEEES
T ss_pred HHHHHHcCCceEEEEcCCCChHHHH--HHHHHHHHhcCCCEEEeC
Confidence 3445556678888888888876532 245666777788876543
No 454
>1vsr_A Protein (VSR endonuclease); DNA repair, mismatch recognition, hydrolase; 1.80A {Escherichia coli} SCOP: c.52.1.15 PDB: 1odg_A*
Probab=24.23 E-value=60 Score=21.90 Aligned_cols=28 Identities=18% Similarity=0.037 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEecCceeec
Q psy17626 68 HKRDKKVKKWCAENNITVKEFVSHTLWD 95 (184)
Q Consensus 68 ~~rd~~v~~~l~~~gi~~~~~~~~~L~~ 95 (184)
.+||....+.|++.|..|..|+.+-+..
T Consensus 74 ~~rD~~~~~~L~~~Gw~VlrfWe~ev~~ 101 (136)
T 1vsr_A 74 VERDRRDISRLQELGWRVLIVWECALRG 101 (136)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEHHHHSS
T ss_pred HHHHHHHHHHHHHCCCEEEEEehHHhhh
Confidence 5789999999999999999998876654
No 455
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=24.20 E-value=1.4e+02 Score=20.22 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHc
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 52 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 52 (184)
....|.++.+++.+.|..++.+.-++.+.+.++++++
T Consensus 50 ~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~ 86 (187)
T 1we0_A 50 ELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENS 86 (187)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHh
Confidence 4567888888888888898888888888888888876
No 456
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=24.19 E-value=2.2e+02 Score=21.02 Aligned_cols=72 Identities=11% Similarity=0.006 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC--ChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQG--SPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV 89 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 89 (184)
|..+-+..+.+.++++|..+.+... ++.. .+..+.. .+++.|+..-.- ....+.. .+.+.+.||++..++
T Consensus 17 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~-~~vdgiIi~~~~---~~~~~~~-~~~~~~~giPvV~~~ 91 (330)
T 3uug_A 17 RWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVT-KGVKVLVIASID---GTTLSDV-LKQAGEQGIKVIAYD 91 (330)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-HTCSEEEECCSS---GGGGHHH-HHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHH-cCCCEEEEEcCC---chhHHHH-HHHHHHCCCCEEEEC
Confidence 7777888899999999999888763 4433 3444443 579988876421 1112222 334567799999886
Q ss_pred Cc
Q psy17626 90 SH 91 (184)
Q Consensus 90 ~~ 91 (184)
..
T Consensus 92 ~~ 93 (330)
T 3uug_A 92 RL 93 (330)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 457
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=24.17 E-value=1.7e+02 Score=20.33 Aligned_cols=44 Identities=9% Similarity=0.104 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCC--eEEEEECChHHHHHHHHHH---cCcceEEEeec
Q psy17626 19 CLADLDRQLKSHGG--QLFIVQGSPISIFQKLKRE---LNFTKLCFEQD 62 (184)
Q Consensus 19 sL~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~---~~~~~v~~~~~ 62 (184)
.+...++.+++.|. ++.+..|+..+.++.+... ..++.|+.+..
T Consensus 101 ~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~ 149 (225)
T 3tr6_A 101 STALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD 149 (225)
T ss_dssp HHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC
T ss_pred HHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC
Confidence 34455566666665 3889999998888877643 46788887653
No 458
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10
Probab=24.12 E-value=1.1e+02 Score=22.58 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=23.5
Q ss_pred HHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 145 LKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 145 L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
|++.|+.+.+..|.+...+..+.++.+.+
T Consensus 38 l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 66 (275)
T 1xvi_A 38 LREANVPVILCSSKTSAEMLYLQKTLGLQ 66 (275)
T ss_dssp HHHTTCCEEEECSSCHHHHHHHHHHTTCT
T ss_pred HHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 44569999999998888888888888775
No 459
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=24.04 E-value=1.3e+02 Score=22.28 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCeEEEEECCh---HHHHHHHHHHcCcc-----eEEEeec
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSP---ISIFQKLKRELNFT-----KLCFEQD 62 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~---~~~l~~l~~~~~~~-----~v~~~~~ 62 (184)
...++=+.|++.|+++.|..|.+ ...+...++..++. .++...+
T Consensus 105 g~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~~~~L~~~Gl~~v~~~~vi~~~~ 156 (258)
T 2i33_A 105 GSIDFLKYTESKGVDIYYISNRKTNQLDATIKNLERVGAPQATKEHILLQDP 156 (258)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEGGGHHHHHHHHHHHTCSSCSTTTEEEECT
T ss_pred cHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHHHHcCCCcCCCceEEECCC
Confidence 44556667888899999999887 45555666666665 4555443
No 460
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=24.02 E-value=94 Score=21.68 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeCC
Q psy17626 132 RFLLECLADLDRQLKSHGGQLFIVQGS 158 (184)
Q Consensus 132 ~fl~~~L~~L~~~L~~~g~~L~v~~g~ 158 (184)
.--.+.|++|+++|++.|+.|.+...+
T Consensus 84 ~~Q~~~L~~ik~sL~~~gI~l~~~fs~ 110 (163)
T 4a5z_A 84 VQQSRGLQEIEESLRSHGVLLEVQYSS 110 (163)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 345678999999999999999987643
No 461
>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A
Probab=24.01 E-value=57 Score=22.82 Aligned_cols=36 Identities=8% Similarity=0.029 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 138 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 138 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
+.++-+.|++.|+++.++.+.....+..+.+..++.
T Consensus 109 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~ 144 (237)
T 4ex6_A 109 VLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGLD 144 (237)
T ss_dssp HHHHHHHHHHTTEEEEEECSSCHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHhCCCcEEEEcCCChHHHHHHHHHcCch
Confidence 344555677779999999888877777777777753
No 462
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=23.97 E-value=2.1e+02 Score=20.76 Aligned_cols=57 Identities=9% Similarity=0.069 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCeEEEEEC-----ChHHHHHHHHHHcCcceEEEeecccch
Q psy17626 10 YNRFRFLLECLADLDRQLKSHGGQLFIVQG-----SPISIFQKLKRELNFTKLCFEQDCEAL 66 (184)
Q Consensus 10 ~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g-----~~~~~l~~l~~~~~~~~v~~~~~~~~~ 66 (184)
...+..+.++|..+.+..++.|+.|.+-.- +..+.+.+++++.+-..|-+.-|....
T Consensus 115 ~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~l~~~~~~~~vg~~~D~~h~ 176 (286)
T 3dx5_A 115 QQERQEYVNRIRMICELFAQHNMYVLLETHPNTLTDTLPSTLELLGEVDHPNLKINLDFLHI 176 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSTTSSHHHHHHHHHHHCCTTEEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEecCCCcCcCCHHHHHHHHHhcCCCCeEEEeccccH
Confidence 345678889999999988899998877642 345667888888877778777777654
No 463
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=23.95 E-value=30 Score=26.09 Aligned_cols=52 Identities=6% Similarity=0.045 Sum_probs=38.0
Q ss_pred CcchhHHHHHHHHHHHHHHHhCCCeEEEEeCChh-----HHHHHHHHHcCcCeEEEc
Q psy17626 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPI-----SIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 127 ~~~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~-----~~l~~l~~~~~~~~v~~n 178 (184)
+..++.++...+......++.-...|.|+..|+. ..|+.+|++++|.-+|..
T Consensus 125 ~~k~p~~lk~G~keV~KaIekgKAkLVVIA~DadP~eivk~LpaLC~k~gVPy~~V~ 181 (256)
T 3izc_H 125 ASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVK 181 (256)
T ss_dssp SCCCSCCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTHHHHHHHHHTCCEEEES
T ss_pred CCCCChhhhccHHHHHHHHHhCcceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEEC
Confidence 3445666666777777788776788988876552 246899999999987754
No 464
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=23.79 E-value=2.1e+02 Score=20.71 Aligned_cols=72 Identities=10% Similarity=0.076 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC----ChHH---HHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEE
Q psy17626 14 RFLLECLADLDRQLKSHGGQLFIVQG----SPIS---IFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVK 86 (184)
Q Consensus 14 ~fl~~sL~~L~~~L~~~g~~L~v~~g----~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~ 86 (184)
.|..+-+..+.+.++++|..+.+... ++.. .+..+. ..+++.|++..... . .....++ .+. .||++.
T Consensus 18 ~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiii~~~~~-~--~~~~~~~-~~~-~~iPvV 91 (304)
T 3o1i_D 18 SYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCT-QWGANAIILGTVDP-H--AYEHNLK-SWV-GNTPVF 91 (304)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHH-HHTCSEEEECCSST-T--SSTTTHH-HHT-TTSCEE
T ss_pred cHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCh-h--HHHHHHH-HHc-CCCCEE
Confidence 47777888888899999999988864 3322 233333 46899888763221 1 0111233 334 799999
Q ss_pred EecCc
Q psy17626 87 EFVSH 91 (184)
Q Consensus 87 ~~~~~ 91 (184)
.++..
T Consensus 92 ~~~~~ 96 (304)
T 3o1i_D 92 ATVNQ 96 (304)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 88543
No 465
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=23.70 E-value=2.5e+02 Score=22.24 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=12.7
Q ss_pred HHHHHHHhcCCeEEEEEC
Q psy17626 22 DLDRQLKSHGGQLFIVQG 39 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v~~g 39 (184)
.+-+.++++|...+++..
T Consensus 16 ~~~~a~~~~G~~vv~v~~ 33 (449)
T 2w70_A 16 RILRACKELGIKTVAVHS 33 (449)
T ss_dssp HHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHcCCeEEEEec
Confidence 455666778998887754
No 466
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}
Probab=23.62 E-value=77 Score=21.47 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
.+.++-+.|++.| ++.++.+.+...+..+.+.+++.
T Consensus 90 ~~~~~l~~l~~~g-~~~i~s~~~~~~~~~~l~~~~~~ 125 (200)
T 3cnh_A 90 EVLALARDLGQRY-RMYSLNNEGRDLNEYRIRTFGLG 125 (200)
T ss_dssp HHHHHHHHHTTTS-EEEEEECCCHHHHHHHHHHHTGG
T ss_pred cHHHHHHHHHHcC-CEEEEeCCcHHHHHHHHHhCCHH
Confidence 3444455567778 88888887777777777777753
No 467
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=23.48 E-value=1.4e+02 Score=20.14 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=18.5
Q ss_pred ChHHHHHHHHHHcCcceEEEe
Q psy17626 40 SPISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 40 ~~~~~l~~l~~~~~~~~v~~~ 60 (184)
...+.|.+++++++++.|+.-
T Consensus 42 ~~~~~l~~li~~~~~~~ivVG 62 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLG 62 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEe
Confidence 356889999999999999987
No 468
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=23.46 E-value=1.5e+02 Score=22.30 Aligned_cols=43 Identities=7% Similarity=0.061 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeC-ChhHHHHHHHHHcCcCeEEEc
Q psy17626 136 ECLADLDRQLKSHGGQLFIVQG-SPISIFQKLKRELNFTKLCFE 178 (184)
Q Consensus 136 ~~L~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~~~~~~v~~n 178 (184)
+.|.+|.+.+++.|++.++.+- -+......++++.|+.-+..+
T Consensus 215 ~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~l~ 258 (286)
T 3gi1_A 215 RQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKTLS 258 (286)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCTHHHHHHHHTTTCEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCeEEEec
Confidence 5788888888888988877763 345666778888888776543
No 469
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=23.37 E-value=55 Score=25.37 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCC---eEEEEECC--------hHHHHHHHHHHcCcceEEEe
Q psy17626 21 ADLDRQLKSHGG---QLFIVQGS--------PISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 21 ~~L~~~L~~~g~---~L~v~~g~--------~~~~l~~l~~~~~~~~v~~~ 60 (184)
.+++++|+.+|. .|+.++.. ..+.+.+|.++-.|.+|-++
T Consensus 118 ~~~e~SL~rL~~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~Gkir~iGvS 168 (346)
T 3n6q_A 118 ASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGIS 168 (346)
T ss_dssp HHHHHHHHHHTCSCEEEEEECSCCTTSCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHhCCCcEeEEEEeCCCCCCCHHHHHHHHHHHHHcCCeeEEEeC
Confidence 455666666664 57777631 23445555555444444443
No 470
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=23.36 E-value=1.4e+02 Score=20.07 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEe--------CChhHHHHHHHHH-cCcC
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQ--------GSPISIFQKLKRE-LNFT 173 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~--------g~~~~~l~~l~~~-~~~~ 173 (184)
...|.+|.+++.+.|..++.+. .+..+.+.+++++ ++++
T Consensus 57 ~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~ 104 (180)
T 3kij_A 57 YLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVT 104 (180)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCC
Confidence 3467888888888787777665 2356778889988 7765
No 471
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=23.29 E-value=2e+02 Score=23.03 Aligned_cols=66 Identities=12% Similarity=0.059 Sum_probs=39.9
Q ss_pred HHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHH-HHHHHHHHHhCCCeEEEecCc
Q psy17626 26 QLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR-DKKVKKWCAENNITVKEFVSH 91 (184)
Q Consensus 26 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~r-d~~v~~~l~~~gi~~~~~~~~ 91 (184)
.++..|..+..+..+..+.|.+.++...+..|+.+.-..|...-. -+.+.+.+++.|+.++.-..+
T Consensus 173 ~~~~~G~~v~~v~~~d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~ 239 (445)
T 1qgn_A 173 ILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTF 239 (445)
T ss_dssp TGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHHHcCCEEEEeCCCCHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 455678888777665566677666653225666654333332222 257788888888877665444
No 472
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=23.09 E-value=1.2e+02 Score=21.45 Aligned_cols=45 Identities=9% Similarity=0.163 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC--------ChHHHHHHHHHHcCcceEEE
Q psy17626 15 FLLECLADLDRQLKSHGGQLFIVQG--------SPISIFQKLKRELNFTKLCF 59 (184)
Q Consensus 15 fl~~sL~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~~~~~~v~~ 59 (184)
-....|.+|.+++...|..++.+.- +..+.+.+++++++++-.+.
T Consensus 76 ~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l 128 (218)
T 3u5r_E 76 LIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYL 128 (218)
T ss_dssp TTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEE
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEE
Confidence 3456788888888888887777765 56788888888888765444
No 473
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=23.02 E-value=1.3e+02 Score=20.34 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=23.9
Q ss_pred HHHHHhCCCeEEEEeCC---------------hhHHHHHHHHHcCcC
Q psy17626 142 DRQLKSHGGQLFIVQGS---------------PISIFQKLKRELNFT 173 (184)
Q Consensus 142 ~~~L~~~g~~L~v~~g~---------------~~~~l~~l~~~~~~~ 173 (184)
=+.|++.|.++.|+.+. +...+..+++..++.
T Consensus 51 L~~L~~~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 97 (176)
T 2fpr_A 51 LLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQ 97 (176)
T ss_dssp HHHHHHTTEEEEEEEECTTTTBTTBCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCEEEEEECCccccccccchHhhhhhHHHHHHHHHHcCCC
Confidence 34456679999999876 566777788888875
No 474
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=22.78 E-value=1.3e+02 Score=23.33 Aligned_cols=47 Identities=6% Similarity=0.126 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcceEEEe
Q psy17626 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60 (184)
Q Consensus 13 ~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 60 (184)
.+|....+..+-+.+++.|.+.+...+.....++.++ +.+++.+.+.
T Consensus 226 ~ef~~p~~~~i~~~i~~~g~~~i~~~~G~~~~l~~l~-~~g~d~~~~d 272 (359)
T 2inf_A 226 RTYIKPVMNRIFSELAKENVPLIMFGVGASHLAGDWH-DLPLDVVGLD 272 (359)
T ss_dssp HHHTHHHHHHHHHHHGGGCSCEEEECTTCGGGHHHHH-TSSCSEEECC
T ss_pred HHHhHHHHHHHHHHHHHcCCcEEEEcCCcHHHHHHHH-HhCCCEEEeC
Confidence 3588888888888888888876665443355666655 5889977664
No 475
>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19
Probab=22.78 E-value=1.5e+02 Score=20.63 Aligned_cols=35 Identities=14% Similarity=0.069 Sum_probs=26.0
Q ss_pred HHHHhCCCeEEEEeCChh---------------HHHHHHHHHcCc--CeEEE
Q psy17626 143 RQLKSHGGQLFIVQGSPI---------------SIFQKLKRELNF--TKLCF 177 (184)
Q Consensus 143 ~~L~~~g~~L~v~~g~~~---------------~~l~~l~~~~~~--~~v~~ 177 (184)
+.|++.|+++.++.+.+. ..+..++++.|+ +.++.
T Consensus 66 ~~L~~~G~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 117 (218)
T 2o2x_A 66 ATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGVFVDMVLA 117 (218)
T ss_dssp HHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred HHHHHCCCEEEEEcCcCCCCcccccHHHHHHHHHHHHHHHHHcCCceeeEEE
Confidence 345566999999998887 677888888885 45553
No 476
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=22.70 E-value=1.7e+02 Score=22.04 Aligned_cols=54 Identities=7% Similarity=0.019 Sum_probs=34.6
Q ss_pred eEEEEECChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEecC
Q psy17626 33 QLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVS 90 (184)
Q Consensus 33 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~ 90 (184)
+..+..|. ....+.++.-.+.-|+...|.+|.+...- +...|++.||++..+.+
T Consensus 129 p~~lk~G~--keV~KaIekgKAkLVVIA~DadP~eivk~--LpaLC~k~gVPy~~V~s 182 (256)
T 3izc_H 129 PYAVKYGL--NHVVALIENKKAKLVLIANDVDPIELVVF--LPALCKKMGVPYAIVKG 182 (256)
T ss_dssp SCCEEESH--HHHHHHHHHTCCSEEEEESCCSSGGGTTH--HHHHHHHHTCCEEEESC
T ss_pred ChhhhccH--HHHHHHHHhCcceEEEEeCCCChHHHHHH--HHHHHHhcCCCEEEECC
Confidence 35555563 33445556677888888888877654443 56677777888766554
No 477
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=22.66 E-value=1.2e+02 Score=22.87 Aligned_cols=50 Identities=16% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCeEEEec--Cceee
Q psy17626 42 ISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFV--SHTLW 94 (184)
Q Consensus 42 ~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~--~~~L~ 94 (184)
...|.+++++.++..||++. ....+.-+.+.+..++.|+++.... +..|+
T Consensus 201 l~~l~~~ik~~~v~~if~e~---~~~~~~~~~l~~~a~~~g~~v~~l~~~~~~l~ 252 (282)
T 3mfq_A 201 MIETVNLIIDHNIKAIFTES---TTNPERMKKLQEAVKAKGGQVEVVTGEGKELF 252 (282)
T ss_dssp HHHHHHHHHHHTCCEEECBT---TSCTHHHHHHHHHHHTTSCCCEEETTTTCCBC
T ss_pred HHHHHHHHHHcCCCEEEEeC---CCChHHHHHHHHHHHhcCCceEEeccCCcccc
No 478
>2pw9_A Putative formate dehydrogenase accessory protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Desulfotalea psychrophila LSV54} SCOP: c.97.1.5
Probab=22.61 E-value=1.1e+02 Score=23.19 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=31.1
Q ss_pred HHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCeEEEccc
Q psy17626 141 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 180 (184)
Q Consensus 141 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~n~~ 180 (184)
+-++-...|+|+++..+.|.+.=-+++++.|+|-|-+-++
T Consensus 207 mV~Kaa~aGIpvlvS~SApTslAV~lA~~~giTLiGf~R~ 246 (268)
T 2pw9_A 207 MVLKCARIGIPIIMSRTSPSSLGLALAKRSGATLVAYSRP 246 (268)
T ss_dssp HHHHHHHHTCCEEEESSCBCHHHHHHHHHHTCEEEEEEET
T ss_pred HHHHHHHcCCCEEEEcccccHHHHHHHHHcCCEEEEEecC
Confidence 4445556699999988888887778999999998876553
No 479
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=22.58 E-value=1.6e+02 Score=21.02 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChHHHHHHHHHH
Q psy17626 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE 51 (184)
Q Consensus 17 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~ 51 (184)
+..|.++.++++++|..++-+.-++.+...+++++
T Consensus 51 l~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~ 85 (224)
T 1prx_A 51 LGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKD 85 (224)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 45566777777777777766666666555555554
No 480
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=22.47 E-value=99 Score=21.72 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEC-ChHHHHHHHHH
Q psy17626 16 LLECLADLDRQLKSHGGQLFIVQG-SPISIFQKLKR 50 (184)
Q Consensus 16 l~~sL~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~ 50 (184)
..++|..+.+..++.|+.|.|..| .+.+.=.+|.+
T Consensus 37 aa~al~~m~~~a~~~Gi~l~i~sgyRs~~~Q~~Ly~ 72 (179)
T 2vo9_A 37 TSDKTRNVIKKMAKEGIYLCVAQGYRSTAEQNALYA 72 (179)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEECCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEECCHHHHHHHHH
Confidence 568889999999999999999998 55555556654
No 481
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=22.37 E-value=1.1e+02 Score=16.77 Aligned_cols=31 Identities=19% Similarity=0.362 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCeEEEEECChHHHHHHHHHHc
Q psy17626 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 52 (184)
Q Consensus 19 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 52 (184)
.+.+|++.|+++|.+. .|.-.+.+.+|.+..
T Consensus 14 kV~eLK~eLk~RgL~~---~G~Ka~Li~RL~~~~ 44 (50)
T 1zrj_A 14 KVNELREELQRRGLDT---RGLKAELAERLQAAL 44 (50)
T ss_dssp CHHHHHHHHHHTTCCC---CSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCC---CCcHHHHHHHHHHHH
Confidence 4679999999999763 677777777776543
No 482
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=22.34 E-value=2.6e+02 Score=21.26 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=35.7
Q ss_pred Chh-hHHHHHHHHHHHHHHHHhcC----------CeEEEEECChHHHHHHHHHHcCcceEEE
Q psy17626 9 GYN-RFRFLLECLADLDRQLKSHG----------GQLFIVQGSPISIFQKLKRELNFTKLCF 59 (184)
Q Consensus 9 ~~~-r~~fl~~sL~~L~~~L~~~g----------~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 59 (184)
|.. |.+|.-.-..+++..|+.-+ .+++|...++.+++..|.+-.+|..+.-
T Consensus 15 ~~~vr~~Fe~~L~~nI~~~L~~~~~~~~~v~~~~gri~V~~~~~~~~~~~L~~vfGI~~~s~ 76 (307)
T 1vbk_A 15 SRQTRSWFEKILMNNIREALVTEEVPYKEIFSRHGRIIVKTNSPKEAANVLVRVFGIVSISP 76 (307)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHTTCCCSEEEEETTEEEEECSCHHHHHHHHTTSTTEEEEEE
T ss_pred CCCcHHHHHHHHHHHHHHHhcccCccceeEEEECCEEEEEcCCHHHHHHHHhhcCCeEEEEE
Confidence 455 88898888899999997632 3345543356677888888778865543
No 483
>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A
Probab=22.29 E-value=37 Score=22.96 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCCeEEEEECChHHHHHHHHHHcCcce
Q psy17626 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 56 (184)
Q Consensus 20 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 56 (184)
+.++-+.|++.|.++.|+.+.+...+..+ +..++..
T Consensus 84 ~~~~l~~l~~~g~~~~i~t~~~~~~~~~~-~~~~~~~ 119 (201)
T 4ap9_A 84 ARELVETLREKGFKVVLISGSFEEVLEPF-KELGDEF 119 (201)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEETTTSGGG-TTTSSEE
T ss_pred HHHHHHHHHHCCCeEEEEeCCcHHHHHHH-HHcCchh
Confidence 44445555666666666665554444444 4444443
No 484
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10
Probab=22.23 E-value=1.5e+02 Score=21.50 Aligned_cols=36 Identities=6% Similarity=0.048 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcCe
Q psy17626 137 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174 (184)
Q Consensus 137 ~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 174 (184)
..+.|++ .+.|+.+.+..|.+...+..+.++.+.+.
T Consensus 24 ~~~al~~--~~~Gi~v~iaTGR~~~~~~~~~~~l~~~~ 59 (268)
T 1nf2_A 24 DRRNIEK--LSRKCYVVFASGRMLVSTLNVEKKYFKRT 59 (268)
T ss_dssp HHHHHHH--HTTTSEEEEECSSCHHHHHHHHHHHSSSC
T ss_pred HHHHHHH--HhCCCEEEEECCCChHHHHHHHHHhCCCC
Confidence 3445555 56688888888888777777877777753
No 485
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=22.12 E-value=1.8e+02 Score=19.37 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHcCcceEEEeecc-----cchhHHHHHHHHHHHH-hCCCeEEEec
Q psy17626 41 PISIFQKLKRELNFTKLCFEQDC-----EALWHKRDKKVKKWCA-ENNITVKEFV 89 (184)
Q Consensus 41 ~~~~l~~l~~~~~~~~v~~~~~~-----~~~~~~rd~~v~~~l~-~~gi~~~~~~ 89 (184)
..+.|.+++++++++.|+.--.. .....++-+...+.|+ ..++++..++
T Consensus 41 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~D 95 (138)
T 1nu0_A 41 DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHD 95 (138)
T ss_dssp CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 36889999999999999987322 2212222223333333 2477777554
No 486
>1nfp_A LUXF gene product; flavin mononucleotide, myristate, flavoprotein; HET: FMN MYR; 1.60A {Photobacterium leiognathi} SCOP: c.1.16.2
Probab=22.11 E-value=1.9e+02 Score=20.53 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=16.1
Q ss_pred EECChHHHHH-HHH---HHcCcceEEEeec
Q psy17626 37 VQGSPISIFQ-KLK---RELNFTKLCFEQD 62 (184)
Q Consensus 37 ~~g~~~~~l~-~l~---~~~~~~~v~~~~~ 62 (184)
+.|+|.++.. +|. +..+++.+.+...
T Consensus 170 ~vGtpe~v~~~~l~~~~~~~G~de~~~~~~ 199 (228)
T 1nfp_A 170 AAGNFDTCLHHVAEMAQGLNNKVDFLFCFE 199 (228)
T ss_dssp EEECHHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred CCcCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 3577776666 543 3467777776543
No 487
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}
Probab=22.04 E-value=1.4e+02 Score=20.42 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 138 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 138 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
+.++-+.|++.|.++.++.+.....+..+.+..++.
T Consensus 96 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~ 131 (233)
T 3s6j_A 96 AVELLETLDKENLKWCIATSGGIDTATINLKALKLD 131 (233)
T ss_dssp HHHHHHHHHHTTCCEEEECSSCHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHCCCeEEEEeCCchhhHHHHHHhcchh
Confidence 344555667779999999888777777777777664
No 488
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=21.92 E-value=1.6e+02 Score=18.53 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEEC--ChHHHHHHHHHHcCcceEEEeecccchhHHHHHHHHHHHHhCCCe
Q psy17626 18 ECLADLDRQLKSHGGQLFIVQG--SPISIFQKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNIT 84 (184)
Q Consensus 18 ~sL~~L~~~L~~~g~~L~v~~g--~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~ 84 (184)
++|+.++.-.++.|-.....+. +--+.+.+|+++++++-|+.--| ..++.+....+.+..|..
T Consensus 13 etlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvd----dkewaekairfvkslgaq 77 (134)
T 2l69_A 13 ETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVD----DKEWAEKAIRFVKSLGAQ 77 (134)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECS----SHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEc----cHHHHHHHHHHHHhcCCe
Confidence 5778888888888877765543 22356889999999998776543 334433334444444543
No 489
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=21.90 E-value=2.2e+02 Score=20.29 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=22.5
Q ss_pred HHHHhcCCeEEEEEC---ChHHHHHHHHHHcCcc
Q psy17626 25 RQLKSHGGQLFIVQG---SPISIFQKLKRELNFT 55 (184)
Q Consensus 25 ~~L~~~g~~L~v~~g---~~~~~l~~l~~~~~~~ 55 (184)
+.|++.|+++.+..| .+...+....+..+++
T Consensus 34 ~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~ 67 (268)
T 3qgm_A 34 KKLKELGKKIIFVSNNSTRSRRILLERLRSFGLE 67 (268)
T ss_dssp HHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCC
T ss_pred HHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCC
Confidence 445667999999999 5666666666777664
No 490
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Probab=21.90 E-value=1.7e+02 Score=19.79 Aligned_cols=12 Identities=8% Similarity=0.171 Sum_probs=5.0
Q ss_pred HhcCCeEEEEEC
Q psy17626 28 KSHGGQLFIVQG 39 (184)
Q Consensus 28 ~~~g~~L~v~~g 39 (184)
++.|.++.+..+
T Consensus 104 ~~~g~~~~i~t~ 115 (221)
T 2wf7_A 104 RSNKIKIALASA 115 (221)
T ss_dssp HHTTCEEEECCC
T ss_pred HHCCCeEEEEcC
Confidence 333444444433
No 491
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=21.86 E-value=2.2e+02 Score=20.78 Aligned_cols=57 Identities=16% Similarity=-0.034 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCeEEEEE-----CChHHHHHHHHHHcCcceEEEeecccch
Q psy17626 10 YNRFRFLLECLADLDRQLKSHGGQLFIVQ-----GSPISIFQKLKRELNFTKLCFEQDCEAL 66 (184)
Q Consensus 10 ~~r~~fl~~sL~~L~~~L~~~g~~L~v~~-----g~~~~~l~~l~~~~~~~~v~~~~~~~~~ 66 (184)
...+..+.++|..+.+..++.|+.|.+-. .+..+.+.+++++.+-..|-+.-|....
T Consensus 139 ~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~~~~~~~~~l~~~v~~~~vg~~~D~~h~ 200 (295)
T 3cqj_A 139 NETRRRFRDGLKESVEMASRAQVTLAMEIMDYPLMNSISKALGYAHYLNNPWFQLYPDIGNL 200 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEEEEECCSSGGGCSHHHHHHHHHHHCCTTEEEECBHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEeeCCCcccCCHHHHHHHHHhcCCCCeEEEeccchH
Confidence 45567888999999999999999987763 2345778888888877778887776543
No 492
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A
Probab=21.82 E-value=2.2e+02 Score=20.31 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=9.2
Q ss_pred HHHHHHHhcCCeEEEEEC
Q psy17626 22 DLDRQLKSHGGQLFIVQG 39 (184)
Q Consensus 22 ~L~~~L~~~g~~L~v~~g 39 (184)
+|.+.|+++|+.=+++.|
T Consensus 133 ~L~~~L~~~gi~~lvi~G 150 (211)
T 3o94_A 133 DLDIRLRERRVSTVILTG 150 (211)
T ss_dssp SHHHHHHHTTCCEEEEEE
T ss_pred hHHHHHHhCCCCeEEEEe
Confidence 345555555555444444
No 493
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=21.74 E-value=1.7e+02 Score=20.37 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCeEEEEeCCh---------------hHHHHHHHHHcCcC--eEEE
Q psy17626 140 DLDRQLKSHGGQLFIVQGSP---------------ISIFQKLKRELNFT--KLCF 177 (184)
Q Consensus 140 ~L~~~L~~~g~~L~v~~g~~---------------~~~l~~l~~~~~~~--~v~~ 177 (184)
++=+.|++.|+++.++.+.+ ...+..++++.++. .++.
T Consensus 57 e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~f~~~~~ 111 (211)
T 2gmw_A 57 DAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYY 111 (211)
T ss_dssp HHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred HHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcCCceEEEEE
Confidence 33445667799999999877 46677778888764 5443
No 494
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.70 E-value=55 Score=24.84 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=36.8
Q ss_pred chhHHHHHHHHHHHHHHHhCCCeEEEEeCChh-----HHHHHHHHHcCcCeEEE
Q psy17626 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPI-----SIFQKLKRELNFTKLCF 177 (184)
Q Consensus 129 ~r~~fl~~~L~~L~~~L~~~g~~L~v~~g~~~-----~~l~~l~~~~~~~~v~~ 177 (184)
.++..+...+.+....|+.-...|.|+.+|+. ..|+.+|++++|.-+++
T Consensus 131 k~~~~L~~G~keV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi~v 184 (266)
T 2zkr_f 131 KRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCII 184 (266)
T ss_dssp SSCCCCCBSHHHHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHHTCCEEEE
T ss_pred CCCCeeeeChHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 45556666777777778776778898876653 25789999999997776
No 495
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=21.69 E-value=1.8e+02 Score=19.10 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhCC--CeEEEEeCC----hhHHHHHHHHHcCcCe
Q psy17626 134 LLECLADLDRQLKSHG--GQLFIVQGS----PISIFQKLKRELNFTK 174 (184)
Q Consensus 134 l~~~L~~L~~~L~~~g--~~L~v~~g~----~~~~l~~l~~~~~~~~ 174 (184)
....|.++.+++.+.| ..++.+.-+ ..+.+.+++++++++-
T Consensus 52 ~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~ 98 (174)
T 1xzo_A 52 MTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSF 98 (174)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCG
T ss_pred HHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCC
Confidence 3456777888888877 666666643 5677888999888763
No 496
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=21.62 E-value=2.1e+02 Score=19.97 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=31.7
Q ss_pred CCCchhHHHHHHHhhhccccc----------cCcchh-HHHHHHHHHHHHHHHhCCCeEE
Q psy17626 105 NVPPLTYKMYLHTVSCIGTMH----------IGYNRF-RFLLECLADLDRQLKSHGGQLF 153 (184)
Q Consensus 105 ~~~~~v~~~F~~~~~~~~~~~----------~~~~r~-~fl~~~L~~L~~~L~~~g~~L~ 153 (184)
|.+|.....|+........+. .|...+ ++.......+.+.|+++|...+
T Consensus 80 G~~p~~~~~fl~~L~~~~~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v 139 (191)
T 1bvy_F 80 GHPPDNAKQFVDWLDQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENI 139 (191)
T ss_dssp TBCCTTTHHHHHHHHTCCSSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCC
T ss_pred CCcCHHHHHHHHHHHhccchhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEe
Confidence 357777777877654432111 233344 4667788999999999997643
No 497
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=21.61 E-value=1.3e+02 Score=21.72 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCC--eEEEEECChHHHHHHHHHHcCcceEEEeec
Q psy17626 20 LADLDRQLKSHGG--QLFIVQGSPISIFQKLKRELNFTKLCFEQD 62 (184)
Q Consensus 20 L~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~ 62 (184)
+...++.+++.|. ++.++.|+..+.++.+-....++.|+.+..
T Consensus 101 ~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~ 145 (248)
T 3tfw_A 101 AQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDAD 145 (248)
T ss_dssp HHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSC
T ss_pred HHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCc
Confidence 4445555666665 488999999887776633336888988654
No 498
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=21.59 E-value=1.3e+02 Score=21.50 Aligned_cols=36 Identities=6% Similarity=-0.008 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHc
Q psy17626 135 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL 170 (184)
Q Consensus 135 ~~~L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 170 (184)
...|.++.+++.+.|..++.+.-|..+.+.++++++
T Consensus 76 ~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~ 111 (221)
T 2c0d_A 76 IIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMP 111 (221)
T ss_dssp HHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHh
Confidence 356778888888888888888877777788888877
No 499
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=21.59 E-value=53 Score=21.42 Aligned_cols=10 Identities=20% Similarity=0.683 Sum_probs=4.6
Q ss_pred cCcceEEEee
Q psy17626 52 LNFTKLCFEQ 61 (184)
Q Consensus 52 ~~~~~v~~~~ 61 (184)
-+|+.|++++
T Consensus 80 ~GI~~vvfDr 89 (112)
T 3v2d_S 80 LGIKQVAFDR 89 (112)
T ss_dssp TTCCBCEEEC
T ss_pred CCCCEEEEec
Confidence 3444444443
No 500
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=21.56 E-value=26 Score=23.89 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCChhHHHHHHHHHcCcC
Q psy17626 138 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 173 (184)
Q Consensus 138 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 173 (184)
|.++.+++++.|..++.+..+..+.+.+++++++++
T Consensus 56 l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~ 91 (164)
T 4gqc_A 56 FRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLA 91 (164)
T ss_dssp SCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCC
T ss_pred hhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcc
Done!