RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17626
(184 letters)
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A
{Arabidopsis thaliana}
Length = 537
Score = 135 bits (343), Expect = 4e-38
Identities = 45/117 (38%), Positives = 65/117 (55%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD LK G +L + +G P + + +E +LCFE D
Sbjct: 53 PGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYD 112
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVS 119
+ + D KVK + + + V VSHTL++P +I+ NG PPL+Y+ +L
Sbjct: 113 TDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAG 169
Score = 78.1 bits (193), Expect = 2e-17
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 94 WDPEVVIQTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLF 153
DP + P G+ G NR RFLLE L DLD LK G +L
Sbjct: 39 IDPHYMESDPSAFSP-------------GSSRAGVNRIRFLLESLKDLDSSLKKLGSRLL 85
Query: 154 IVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
+ +G P + + +E +LCFE D + Y
Sbjct: 86 VFKGEPGEVLVRCLQEWKVKRLCFEYDTDPY 116
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET:
TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A*
2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Length = 543
Score = 135 bits (341), Expect = 1e-37
Identities = 42/121 (34%), Positives = 64/121 (52%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE
Sbjct: 73 ILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFET 132
Query: 62 DCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTVSCI 121
D E RD V+K + V+ SHT+++PE+VI N P+TY+ +L V +
Sbjct: 133 DIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQL 192
Query: 122 G 122
Sbjct: 193 K 193
Score = 77.7 bits (192), Expect = 2e-17
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D
Sbjct: 75 DWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDI 134
Query: 182 EAY 184
E Y
Sbjct: 135 EPY 137
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag,
phosphorylation, gene regulation, signaling protein;
HET: TPO FAD; 2.30A {Drosophila melanogaster}
Length = 538
Score = 133 bits (338), Expect = 2e-37
Identities = 61/124 (49%), Positives = 88/124 (70%), Gaps = 3/124 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLC 58
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L ++ ++C
Sbjct: 45 SAGTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRIC 104
Query: 59 FEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHTV 118
EQDCE +W++RD+ ++ C E NI E VSHTLWDP++VI+TNG +PPLTY+M+LHTV
Sbjct: 105 IEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTV 164
Query: 119 SCIG 122
IG
Sbjct: 165 QIIG 168
Score = 72.7 bits (179), Expect = 1e-15
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 114 YLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKREL 170
++ GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L ++
Sbjct: 39 FIFDGESAGTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQV 98
Query: 171 NFTKLCFEQDCEAY 184
++C EQDCE
Sbjct: 99 RLHRICIEQDCEPI 112
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A
{Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Length = 489
Score = 103 bits (259), Expect = 2e-26
Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
G G R FL + + +L L+ G +L + G P + ++ +++N + + ++
Sbjct: 50 QGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHRE 109
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTY 111
++ + K I K + TL PE + + P +
Sbjct: 110 VTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDL-PFSIQDLPDLF 157
Score = 65.7 bits (161), Expect = 4e-13
Identities = 12/63 (19%), Positives = 28/63 (44%)
Query: 122 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 181
G G R FL + + +L L+ G +L + G P + ++ +++N + + ++
Sbjct: 51 GFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREV 110
Query: 182 EAY 184
Sbjct: 111 TQE 113
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein,
flavoprotein, FAD, mitochondrion, plastid, chromophore,
chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana}
PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Length = 525
Score = 100 bits (250), Expect = 4e-25
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 3/112 (2%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G R FL+ECL DL + L G L I G P I L ++ + +
Sbjct: 84 FFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHK 143
Query: 62 DCEALWHKRDKKVKKWCAE--NNITVKEFVSHTLWDPEVVIQTNGNVPPLTY 111
+ + ++ V + N+ ++ T++ + + + P Y
Sbjct: 144 ETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKD-DLPFDVFDLPDVY 194
Score = 67.7 bits (166), Expect = 7e-14
Identities = 19/70 (27%), Positives = 27/70 (38%)
Query: 115 LHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 174
HT G R FL+ECL DL + L G L I G P I L ++
Sbjct: 79 FHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGART 138
Query: 175 LCFEQDCEAY 184
+ ++ +
Sbjct: 139 VFAHKETCSE 148
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin
enzyme, photoreactivating enzyme; HET: FAD; 1.80A
{Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB:
1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Length = 484
Score = 79.5 bits (197), Expect = 5e-18
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
+ R +L CL +L ++ + G +L ++QG P + +L ++L + + QD E
Sbjct: 46 DMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPY 105
Query: 67 WHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
RD +V I + L P+ + + P Y +Y
Sbjct: 106 GRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQI-LSGSGNP---YSVY 149
Score = 49.5 bits (119), Expect = 1e-07
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 101 QTNGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPI 160
+ + L + + + + R +L CL +L ++ + G +L ++QG P
Sbjct: 26 AQSAQLIGL----FCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQ 81
Query: 161 SIFQKLKRELNFTKLCFEQDCEAY 184
+ +L ++L + + QD E Y
Sbjct: 82 HLIPQLAQQLQAEAVYWNQDIEPY 105
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein;
HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP:
a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Length = 509
Score = 73.0 bits (180), Expect = 1e-15
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGS-PISIFQKLKRELNFTKLCFEQDCEALWHKRDKK 73
+L LA LD L+S G L + + ++ + + +++ F + L RD +
Sbjct: 62 WLKNSLAQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHR 121
Query: 74 VKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
K I V+ F + L++P V P + M+
Sbjct: 122 AKDVLTAQGIAVRSFNADLLYEPWEV-TDELGRP---FSMF 158
Score = 42.6 bits (101), Expect = 3e-05
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 103 NGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGS-PIS 161
G V L ++ G H G +L LA LD L+S G L + + ++
Sbjct: 36 AGPVIAL----FVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVA 91
Query: 162 IFQKLKRELNFTKLCFEQDCEAY 184
+ + +++ F +
Sbjct: 92 SLLDVVKSTGASQIFFNHLYDPL 114
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD,
DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Length = 440
Score = 71.0 bits (175), Expect = 4e-15
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHKR 70
F++ L +LD +L+ G +L + G + + +++ + +D R
Sbjct: 49 FAVSFMINSLLELDDELRKKGSRLNVFFGEAEKVVSRFFNKVD--AIYVNEDYTPFSISR 106
Query: 71 DKKVKKWCAENNITVKEFVSHTLWDPEVV 99
D+K++K C EN I K + + L +
Sbjct: 107 DEKIRKVCEENGIEFKAYEDYLLTPKSLF 135
Score = 46.4 bits (111), Expect = 1e-06
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 129 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 171
F++ L +LD +L+ G +L + G + + +++
Sbjct: 49 FAVSFMINSLLELDDELRKKGSRLNVFFGEAEKVVSRFFNKVD 91
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein,
nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A
{Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB:
1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Length = 420
Score = 66.3 bits (163), Expect = 2e-13
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 12/112 (10%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P + R + LE + L ++ GG L++++G P + R L +
Sbjct: 37 PNNLKTTPRRRAWFLENVRALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTS 96
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
RD +V++ H L P ++ + Y++Y
Sbjct: 97 HTPYGRYRDGRVREALP--------VPLHLLPAPHLL-PPDLPRA---YRVY 136
Score = 48.6 bits (117), Expect = 2e-07
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 127 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAY 184
R + LE + L ++ GG L++++G P + R L + Y
Sbjct: 43 TPRRRAWFLENVRALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSHTPY 100
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD;
1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Length = 482
Score = 66.2 bits (162), Expect = 3e-13
Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN----FTKLC 58
+ G ++ F+L+ L +L+ L F ++G P + ++ N T
Sbjct: 77 DEFLEAGIRQYEFMLKGLQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFS 136
Query: 59 FEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99
+ +++ ++K + +I E +H +
Sbjct: 137 PLRI-------KNQWIEKVISGISIPFFEVDAHNVVPCWEA 170
Score = 45.4 bits (108), Expect = 3e-06
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 125 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 171
G ++ F+L+ L +L+ L F ++G P + ++ N
Sbjct: 81 EAGIRQYEFMLKGLQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYN 127
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy
transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA
FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1
c.28.1.1
Length = 471
Score = 63.3 bits (155), Expect = 2e-12
Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 10/112 (8%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQG----SPISIFQKLKRELNFTKLCFEQD 62
++ + + L L L G L + + + I +++ E + T L +
Sbjct: 45 NMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQ 104
Query: 63 CEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMY 114
E RD +V++ N+ + F + P V T + YK++
Sbjct: 105 YEVNERARDVEVERAL--RNVVCEGFDDSVILPPGAV-MTGNHEM---YKVF 150
Score = 41.8 bits (99), Expect = 6e-05
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 114 YLHTVSCIGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQG----SPISIFQKLKRE 169
Y+ T T ++ + + L L L G L + + + I +++ E
Sbjct: 34 YIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAE 93
Query: 170 LNFTKLCFEQDCEAY 184
+ T L + E
Sbjct: 94 NSVTHLFYNYQYEVN 108
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine
dimers, UV damaged DNA, DNA repai flavoprotein; HET:
FAD; 1.71A {Oryza sativa japonica group}
Length = 506
Score = 59.0 bits (143), Expect = 9e-11
Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 3/95 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
+ FLL L L + F+ G P I L + L + L +
Sbjct: 84 SARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAEI-PALVQRLGASTLVADFSPLRP 142
Query: 67 WHKRDKKVKKWCAEN--NITVKEFVSHTLWDPEVV 99
+ V + V + +H +
Sbjct: 143 VREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTA 177
Score = 40.5 bits (95), Expect = 1e-04
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 125 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 171
+ FLL L L + F+ G P I L + L
Sbjct: 84 SARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAEI-PALVQRLG 129
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.017
Identities = 29/178 (16%), Positives = 53/178 (29%), Gaps = 56/178 (31%)
Query: 4 GTMHIGYNR--FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
G Y F + + D + VQ P SI K +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCK---------DVQDMPKSILSK-------------E 49
Query: 62 DCEALWHKRDKKVKK----W--CAENNITVKEFVSHT-------LWDPEVVIQTNGNVPP 108
+ + + +D W ++ V++FV L P I+T P
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP---IKTEQRQPS 106
Query: 109 LTYKMYLHTVSCIGTMH------IGYNRFRFLLECLADLDR---QLKSHGGQLFIVQG 157
+ +MY + ++ YN R L+ L + +L+ ++ G
Sbjct: 107 MMTRMY---IEQRDRLYNDNQVFAKYNVSR--LQPYLKLRQALLELRPAKN--VLIDG 157
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.028
Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 46 QKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVV 99
+ +++E + ++D E ++ ++V+K N I K F D +++
Sbjct: 106 KVMEQEW---REKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQP--DADII 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.51
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 12/53 (22%)
Query: 142 DRQLKSHGGQ--LFIVQGSPISI---F-----QKLKRELNFTKLCFEQDCEAY 184
D K G L IV +P+++ F +++ RE N++ + FE +
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI-RE-NYSAMIFETIVDGK 1700
Score = 28.1 bits (62), Expect = 2.2
Identities = 15/113 (13%), Positives = 36/113 (31%), Gaps = 39/113 (34%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF--TKLCFEQD 62
T+H G + + + E + + + G +K+ +E+N T F +
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDGK----------LKTEKIFKEINEHSTSYTFRSE 1722
Query: 63 CEALWHKRDKKVKKWCAENNITVKEF-------VSHTLWDPEVVIQTNGNVPP 108
L + T +F + ++ +++ G +P
Sbjct: 1723 KGLL---------------SAT--QFTQPALTLMEKAAFE---DLKSKGLIPA 1755
Score = 27.3 bits (60), Expect = 4.3
Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 33/113 (29%)
Query: 87 EFVSHTLWDPEVVIQT--NGNVPPLTYKMYLHTVSCIGTMHIGYNRFRFLLECLADLDRQ 144
E +T P ++ + N P + M +S + ++ +
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVP-SP-M----LSISNLT-------QEQVQDYVNKTNS 358
Query: 145 LKSHGGQL----------FIVQGSPISI------FQKLKRE--LNFTKLCFEQ 179
G Q+ +V G P S+ +K K L+ +++ F +
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT;
protein-protein complex, translation; HET: MSE; 2.20A
{Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Length = 291
Score = 26.6 bits (59), Expect = 4.7
Identities = 3/19 (15%), Positives = 10/19 (52%)
Query: 71 DKKVKKWCAENNITVKEFV 89
+ ++ + ++V +FV
Sbjct: 251 SITLGQYVQPHGVSVVDFV 269
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.455
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,823,904
Number of extensions: 155340
Number of successful extensions: 512
Number of sequences better than 10.0: 1
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 34
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.7 bits)