RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17626
         (184 letters)



>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts),
           dimerisation domain {Cow (Bos taurus), mitochondrial
           [TaxId: 9913]}
          Length = 109

 Score = 28.7 bits (64), Expect = 0.18
 Identities = 3/19 (15%), Positives = 10/19 (52%)

Query: 71  DKKVKKWCAENNITVKEFV 89
              + ++   + ++V +FV
Sbjct: 84  SITLGQYVQPHGVSVVDFV 102


>d1n4ka1 a.118.22.1 (A:436-602) IP3 receptor type 1 binding core,
          domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 167

 Score = 26.7 bits (59), Expect = 1.5
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 8  IGYNRFRFLLECLADL----DRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60
          I  N  R + + L DL         S    L +V   P    QKL RE N  K  F+
Sbjct: 30 ITQNERRSVTKLLEDLVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFK 86



 Score = 26.7 bits (59), Expect = 1.5
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 126 IGYNRFRFLLECLADL----DRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 178
           I  N  R + + L DL         S    L +V   P    QKL RE N  K  F+
Sbjct: 30  ITQNERRSVTKLLEDLVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFK 86


>d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453
           {Bifidobacterium longum [TaxId: 216816]}
          Length = 118

 Score = 25.9 bits (56), Expect = 1.9
 Identities = 8/77 (10%), Positives = 16/77 (20%), Gaps = 3/77 (3%)

Query: 50  RELNFTKLCFEQDCE-ALWHKRDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPP 108
             L    +    D          +              + V   +     ++  N N  P
Sbjct: 21  TILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMLEVGKSADLLVLNAN--P 78

Query: 109 LTYKMYLHTVSCIGTMH 125
           L     L   + +    
Sbjct: 79  LDDLRALEHPALVIAAG 95


>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts),
           dimerisation domain {Escherichia coli [TaxId: 562]}
          Length = 143

 Score = 25.3 bits (55), Expect = 3.4
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 71  DKKVKKWCAENNITVKEFV 89
            K V +   E+N  V  F+
Sbjct: 99  SKTVGQLLKEHNAEVTGFI 117


>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 280

 Score = 25.3 bits (54), Expect = 4.6
 Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 13  FRFLLECLADLDRQLKSH------GGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEAL 66
              +L  + D+   LK          ++ I+  S  S + KL ++   ++   +  C   
Sbjct: 129 MIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKY-GSRFPQDDLC--- 184

Query: 67  WHKRDKKVKKWCAENNITVKEFVSHTLWD 95
            +     + +      +  + +   +  D
Sbjct: 185 QYITSDDLTQMLDNLGLKYECYDLLSTMD 213


>d2hwja1 d.268.1.3 (A:4-204) Hypothetical protein Atu1540
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 201

 Score = 25.1 bits (55), Expect = 4.8
 Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 9/52 (17%)

Query: 115 LH-TVSCIGTMHIGYNRFRFLLECLADLDRQLKSH--------GGQLFIVQG 157
           L  T   +G   +   R  +      D D  L +H          + +++  
Sbjct: 14  LRPTQIAVGFREVELKRKEWRETRKKDGDDFLGNHIVPVVAGPKDRAYLIDH 65


>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis
           protein SpsA {Bacillus subtilis [TaxId: 1423]}
          Length = 255

 Score = 25.1 bits (53), Expect = 5.3
 Identities = 22/167 (13%), Positives = 51/167 (30%), Gaps = 5/167 (2%)

Query: 10  YNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEALWHK 69
           YN+  ++ + ++ +  Q  S      +   S       ++  LN  ++ F Q   +   +
Sbjct: 10  YNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKE 69

Query: 70  RDKKVKKWCAENNITVKEFVSHTLWDPEVVIQTNGNVPPLTYKMYLHT-----VSCIGTM 124
           R +K +     N         +  +  +  I     +  +  ++  H       S   T 
Sbjct: 70  RTEKTRYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTY 129

Query: 125 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN 171
           H+  NR                +             S+ +K+K +  
Sbjct: 130 HLNENRDIVKETVRPAAQVTWNAPCAIDHCSVMHRYSVLEKVKEKFG 176


>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 98

 Score = 24.2 bits (52), Expect = 6.3
 Identities = 7/64 (10%), Positives = 20/64 (31%), Gaps = 1/64 (1%)

Query: 39  GSPISIF-QKLKRELNFTKLCFEQDCEALWHKRDKKVKKWCAENNITVKEFVSHTLWDPE 97
                 F ++ +  L    +  E     L +K +   KK        ++      +++  
Sbjct: 24  SMRFCPFAERTRLVLKAKGIRHEVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESA 83

Query: 98  VVIQ 101
           +  +
Sbjct: 84  ITCE 87


>d1duga1 a.45.1.1 (A:81-220) Class alpha GST {Schistosoma
          japonicum [TaxId: 6182]}
          Length = 140

 Score = 24.2 bits (52), Expect = 7.7
 Identities = 4/24 (16%), Positives = 11/24 (45%)

Query: 54 FTKLCFEQDCEALWHKRDKKVKKW 77
           +++ + +D E L      K+ + 
Sbjct: 25 VSRIAYSKDFETLKVDFLSKLPEM 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.142    0.455 

Gapped
Lambda     K      H
   0.267   0.0483    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 722,052
Number of extensions: 33609
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 14
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.6 bits)