Query psy17628
Match_columns 338
No_of_seqs 489 out of 1539
Neff 11.6
Searched_HMMs 46136
Date Fri Aug 16 18:55:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569|consensus 100.0 8.7E-37 1.9E-41 256.9 26.9 300 3-310 162-472 (485)
2 KOG0254|consensus 100.0 2E-27 4.2E-32 209.5 25.8 302 3-310 188-501 (513)
3 TIGR00887 2A0109 phosphate:H+ 100.0 8E-28 1.7E-32 211.9 21.3 271 16-304 203-500 (502)
4 PF00083 Sugar_tr: Sugar (and 100.0 1.8E-32 3.8E-37 239.2 -15.0 295 2-306 147-450 (451)
5 TIGR01299 synapt_SV2 synaptic 100.0 1.4E-26 3.1E-31 207.5 21.5 263 16-299 333-740 (742)
6 PRK10077 xylE D-xylose transpo 99.9 4.2E-25 9.1E-30 194.3 27.5 275 16-308 193-473 (479)
7 KOG0253|consensus 99.9 1.2E-25 2.6E-30 178.1 18.0 279 1-300 208-527 (528)
8 TIGR00879 SP MFS transporter, 99.9 1.1E-23 2.3E-28 185.5 26.9 292 3-300 173-478 (481)
9 TIGR00898 2A0119 cation transp 99.9 2.5E-24 5.4E-29 190.5 19.0 273 3-301 226-503 (505)
10 PRK10642 proline/glycine betai 99.9 3.9E-22 8.5E-27 175.3 18.4 245 16-300 191-437 (490)
11 KOG0252|consensus 99.9 5.4E-23 1.2E-27 167.9 7.8 271 16-307 224-512 (538)
12 COG2271 UhpC Sugar phosphate p 99.9 3.6E-21 7.9E-26 156.3 12.5 245 16-292 184-434 (448)
13 KOG0255|consensus 99.8 5.1E-19 1.1E-23 157.1 22.4 281 4-307 218-507 (521)
14 PRK11663 regulatory protein Uh 99.8 9E-20 2E-24 158.1 13.6 165 120-295 259-427 (434)
15 PRK03893 putative sialic acid 99.8 2.1E-18 4.6E-23 152.5 19.5 151 122-283 293-444 (496)
16 PRK09952 shikimate transporter 99.8 1.5E-18 3.3E-23 150.5 18.0 166 120-295 266-435 (438)
17 PRK11551 putative 3-hydroxyphe 99.8 1.2E-18 2.5E-23 150.3 16.8 138 120-270 236-373 (406)
18 PRK10489 enterobactin exporter 99.8 1.7E-18 3.8E-23 149.6 17.2 169 122-303 241-410 (417)
19 PRK09556 uhpT sugar phosphate 99.8 6.3E-19 1.4E-23 154.3 14.5 159 120-289 274-446 (467)
20 PRK12307 putative sialic acid 99.8 3.7E-18 8E-23 148.1 17.7 168 91-272 220-388 (426)
21 COG2814 AraJ Arabinose efflux 99.8 5.9E-18 1.3E-22 139.3 17.6 231 3-290 151-384 (394)
22 PRK11273 glpT sn-glycerol-3-ph 99.8 4E-18 8.7E-23 148.6 17.2 161 120-291 269-434 (452)
23 TIGR00903 2A0129 major facilit 99.8 4.9E-18 1.1E-22 143.3 16.4 227 4-288 125-361 (368)
24 TIGR00893 2A0114 d-galactonate 99.8 3.9E-18 8.5E-23 146.5 15.0 260 3-289 128-396 (399)
25 TIGR00890 2A0111 Oxalate/Forma 99.8 5.3E-18 1.1E-22 144.7 15.6 151 123-284 224-374 (377)
26 TIGR00712 glpT glycerol-3-phos 99.8 3E-18 6.6E-23 148.8 12.9 251 16-296 184-437 (438)
27 TIGR00891 2A0112 putative sial 99.8 2.4E-17 5.2E-22 142.1 18.0 139 122-272 256-396 (405)
28 TIGR02332 HpaX 4-hydroxyphenyl 99.8 1.4E-17 2.9E-22 143.4 15.7 235 16-279 167-408 (412)
29 PRK10406 alpha-ketoglutarate t 99.8 3.7E-17 7.9E-22 141.8 18.4 218 16-285 197-417 (432)
30 TIGR00889 2A0110 nucleoside tr 99.8 5E-17 1.1E-21 139.9 17.6 192 92-297 201-407 (418)
31 COG2271 UhpC Sugar phosphate p 99.8 2E-18 4.4E-23 140.4 8.4 184 101-297 26-211 (448)
32 PRK09528 lacY galactoside perm 99.8 2.4E-17 5.1E-22 142.6 15.6 147 135-294 258-405 (420)
33 PRK15075 citrate-proton sympor 99.8 3.7E-17 8E-22 141.9 16.6 144 119-271 253-398 (434)
34 TIGR00895 2A0115 benzoate tran 99.8 2.3E-17 5E-22 141.8 15.1 240 4-264 152-397 (398)
35 TIGR00899 2A0120 sugar efflux 99.8 4.3E-17 9.2E-22 139.1 16.5 228 4-288 136-370 (375)
36 PRK15011 sugar efflux transpor 99.8 3.4E-17 7.3E-22 140.3 15.8 159 121-294 233-392 (393)
37 PRK03545 putative arabinose tr 99.7 1.4E-16 2.9E-21 136.6 18.6 218 16-292 162-380 (390)
38 TIGR00892 2A0113 monocarboxyla 99.7 1.4E-17 3.1E-22 145.0 11.7 154 120-286 257-415 (455)
39 TIGR00895 2A0115 benzoate tran 99.7 5.2E-17 1.1E-21 139.7 14.4 165 119-296 32-196 (398)
40 PRK09705 cynX putative cyanate 99.7 1.4E-16 3.1E-21 136.3 16.8 167 119-299 220-388 (393)
41 KOG2533|consensus 99.7 3E-17 6.4E-22 141.1 12.3 227 16-276 205-440 (495)
42 TIGR02332 HpaX 4-hydroxyphenyl 99.7 1.1E-16 2.4E-21 137.7 15.6 182 103-297 7-194 (412)
43 PRK11663 regulatory protein Uh 99.7 5.3E-17 1.2E-21 140.9 12.8 178 105-295 24-201 (434)
44 KOG2532|consensus 99.7 4.7E-17 1E-21 139.5 12.1 237 16-291 194-446 (466)
45 PRK11010 ampG muropeptide tran 99.7 3.9E-16 8.5E-21 137.0 17.0 163 123-295 241-405 (491)
46 TIGR00894 2A0114euk Na(+)-depe 99.7 1.9E-16 4.2E-21 138.8 13.7 240 16-288 197-446 (465)
47 TIGR01299 synapt_SV2 synaptic 99.7 8.9E-16 1.9E-20 138.5 17.3 162 121-296 184-358 (742)
48 PRK03545 putative arabinose tr 99.7 3.9E-16 8.5E-21 133.8 14.2 161 122-295 27-187 (390)
49 PLN00028 nitrate transmembrane 99.7 3E-16 6.5E-21 137.5 13.2 154 122-290 270-431 (476)
50 TIGR00893 2A0114 d-galactonate 99.7 2.6E-16 5.6E-21 135.2 12.2 164 121-297 11-174 (399)
51 TIGR00710 efflux_Bcr_CflA drug 99.7 4E-16 8.6E-21 133.6 12.9 166 119-297 20-185 (385)
52 TIGR00883 2A0106 metabolite-pr 99.7 1.2E-15 2.6E-20 131.0 15.6 147 120-275 235-384 (394)
53 PRK09874 drug efflux system pr 99.7 8.5E-16 1.8E-20 132.7 14.6 157 123-292 238-398 (408)
54 TIGR00881 2A0104 phosphoglycer 99.7 4.1E-16 8.9E-21 133.2 12.2 230 16-274 149-379 (379)
55 PRK05122 major facilitator sup 99.7 4.6E-15 1E-19 127.7 18.6 157 122-294 234-390 (399)
56 TIGR02718 sider_RhtX_FptX side 99.7 2.3E-15 5.1E-20 129.0 16.0 183 91-285 200-384 (390)
57 PRK10213 nepI ribonucleoside t 99.7 1.4E-15 3.1E-20 130.1 14.6 161 122-295 38-198 (394)
58 TIGR00902 2A0127 phenyl propri 99.7 1.9E-15 4E-20 129.1 15.2 175 91-285 197-372 (382)
59 PRK11551 putative 3-hydroxyphe 99.7 4.6E-16 9.9E-21 134.2 11.6 164 120-296 31-194 (406)
60 PRK10091 MFS transport protein 99.7 3.1E-15 6.6E-20 127.8 16.4 155 123-290 218-374 (382)
61 COG2814 AraJ Arabinose efflux 99.7 1.3E-15 2.7E-20 125.7 13.2 161 120-293 29-189 (394)
62 PRK11273 glpT sn-glycerol-3-ph 99.7 8.4E-16 1.8E-20 134.1 12.8 164 123-296 48-212 (452)
63 PRK10054 putative transporter; 99.7 1.6E-15 3.5E-20 129.9 14.1 165 117-295 20-185 (395)
64 PRK10473 multidrug efflux syst 99.7 7.8E-16 1.7E-20 132.1 12.1 180 105-297 4-183 (392)
65 PRK15402 multidrug efflux syst 99.7 6.3E-15 1.4E-19 127.1 17.8 209 16-272 166-375 (406)
66 TIGR00882 2A0105 oligosacchari 99.7 2.4E-15 5.1E-20 129.2 15.0 241 3-290 143-393 (396)
67 PRK14995 methyl viologen resis 99.7 1.4E-15 3.1E-20 134.0 13.8 179 105-296 7-186 (495)
68 TIGR00891 2A0112 putative sial 99.7 2.5E-15 5.5E-20 129.5 15.1 179 104-296 12-192 (405)
69 TIGR00897 2A0118 polyol permea 99.7 1E-14 2.2E-19 125.5 18.5 162 119-290 237-399 (402)
70 TIGR00711 efflux_EmrB drug res 99.7 1.1E-15 2.5E-20 134.9 12.9 174 110-296 8-181 (485)
71 PRK10091 MFS transport protein 99.7 1.7E-15 3.8E-20 129.3 13.1 164 120-296 19-182 (382)
72 TIGR00900 2A0121 H+ Antiporter 99.7 7E-15 1.5E-19 124.9 16.6 133 125-269 232-365 (365)
73 COG2223 NarK Nitrate/nitrite t 99.7 6.9E-15 1.5E-19 120.2 15.5 228 16-291 171-400 (417)
74 PLN00028 nitrate transmembrane 99.6 3.9E-15 8.5E-20 130.5 14.9 165 116-294 48-221 (476)
75 PRK12382 putative transporter; 99.6 1.2E-14 2.5E-19 124.9 17.5 155 122-291 234-388 (392)
76 TIGR00903 2A0129 major facilit 99.6 2.6E-15 5.7E-20 126.8 12.7 164 120-297 7-170 (368)
77 TIGR00881 2A0104 phosphoglycer 99.6 5.7E-16 1.2E-20 132.3 8.7 164 120-296 11-175 (379)
78 KOG1330|consensus 99.6 5.2E-16 1.1E-20 127.8 7.7 166 120-298 49-215 (493)
79 PRK14995 methyl viologen resis 99.6 4.2E-15 9.1E-20 131.1 13.8 138 120-267 275-413 (495)
80 PRK15034 nitrate/nitrite trans 99.6 2.4E-14 5.2E-19 122.2 17.7 189 91-292 244-454 (462)
81 PRK10504 putative transporter; 99.6 5.2E-15 1.1E-19 130.1 14.1 170 113-295 19-188 (471)
82 PRK12307 putative sialic acid 99.6 4.5E-15 9.7E-20 128.9 13.4 157 108-277 22-178 (426)
83 PRK03699 putative transporter; 99.6 4.3E-15 9.3E-20 127.5 13.0 157 120-290 221-378 (394)
84 PRK09874 drug efflux system pr 99.6 1.4E-14 2.9E-19 125.2 16.2 163 119-295 29-196 (408)
85 TIGR00792 gph sugar (Glycoside 99.6 6.5E-15 1.4E-19 128.3 13.9 205 16-271 172-384 (437)
86 PRK15403 multidrug efflux syst 99.6 5E-15 1.1E-19 127.6 13.0 164 121-297 33-196 (413)
87 TIGR00712 glpT glycerol-3-phos 99.6 3.2E-15 6.8E-20 130.0 11.9 164 123-296 46-210 (438)
88 PRK10504 putative transporter; 99.6 1.2E-14 2.7E-19 127.8 15.6 141 120-270 277-418 (471)
89 PRK15402 multidrug efflux syst 99.6 9E-15 2E-19 126.1 14.2 165 120-297 29-193 (406)
90 PRK10213 nepI ribonucleoside t 99.6 4.6E-14 9.9E-19 120.9 18.1 149 123-285 235-384 (394)
91 TIGR00894 2A0114euk Na(+)-depe 99.6 7.2E-15 1.6E-19 128.9 13.3 152 133-295 70-222 (465)
92 PF07690 MFS_1: Major Facilita 99.6 2.3E-15 5E-20 127.2 9.9 163 120-295 12-175 (352)
93 TIGR00710 efflux_Bcr_CflA drug 99.6 2.2E-14 4.7E-19 122.9 15.8 200 16-264 158-358 (385)
94 PRK11902 ampG muropeptide tran 99.6 3.5E-14 7.5E-19 122.2 16.9 222 16-288 160-386 (402)
95 TIGR00886 2A0108 nitrite extru 99.6 1.9E-14 4.1E-19 122.4 15.2 166 117-295 14-191 (366)
96 TIGR00711 efflux_EmrB drug res 99.6 6.5E-15 1.4E-19 130.1 12.7 139 120-267 271-410 (485)
97 PRK15462 dipeptide/tripeptide 99.6 1.4E-14 2.9E-19 125.1 14.2 154 119-284 24-181 (493)
98 PRK11128 putative 3-phenylprop 99.6 3.1E-14 6.7E-19 121.7 15.6 173 91-283 197-370 (382)
99 cd06174 MFS The Major Facilita 99.6 4.2E-14 9.1E-19 119.5 16.0 156 120-288 191-348 (352)
100 PRK11652 emrD multidrug resist 99.6 2.1E-14 4.5E-19 123.3 14.2 165 120-297 24-188 (394)
101 PRK11102 bicyclomycin/multidru 99.6 3.3E-14 7.1E-19 121.5 14.7 208 4-259 126-341 (377)
102 TIGR00900 2A0121 H+ Antiporter 99.6 1.7E-14 3.7E-19 122.6 12.8 161 120-288 15-175 (365)
103 PRK03633 putative MFS family t 99.6 1.3E-13 2.9E-18 117.7 18.3 148 122-285 218-365 (381)
104 PRK11102 bicyclomycin/multidru 99.6 1.1E-14 2.3E-19 124.5 11.2 163 121-296 8-170 (377)
105 TIGR00892 2A0113 monocarboxyla 99.6 1.8E-14 3.9E-19 125.7 12.7 158 121-292 36-194 (455)
106 TIGR00887 2A0109 phosphate:H+ 99.6 5.2E-14 1.1E-18 124.5 15.8 153 137-297 54-229 (502)
107 PRK10473 multidrug efflux syst 99.6 4.8E-14 1E-18 121.1 14.9 132 123-272 222-354 (392)
108 PRK03699 putative transporter; 99.6 5.7E-14 1.2E-18 120.5 15.2 155 120-287 23-178 (394)
109 COG2223 NarK Nitrate/nitrite t 99.6 5E-14 1.1E-18 115.2 13.8 180 104-295 14-196 (417)
110 PRK10077 xylE D-xylose transpo 99.6 5.1E-14 1.1E-18 124.2 15.1 160 135-296 51-218 (479)
111 TIGR00890 2A0111 Oxalate/Forma 99.6 3.5E-15 7.7E-20 127.3 7.5 161 120-294 19-179 (377)
112 PRK11043 putative transporter; 99.6 1.7E-13 3.6E-18 118.1 17.3 137 121-266 220-356 (401)
113 PRK10489 enterobactin exporter 99.6 6.6E-14 1.4E-18 121.2 14.8 167 120-295 33-199 (417)
114 PRK11043 putative transporter; 99.6 6.2E-14 1.3E-18 120.7 14.5 160 121-294 23-182 (401)
115 TIGR01272 gluP glucose/galacto 99.6 7.8E-14 1.7E-18 115.0 14.3 141 120-276 156-299 (310)
116 PRK03893 putative sialic acid 99.6 3.7E-14 8.1E-19 125.6 12.9 156 109-277 25-180 (496)
117 PRK11646 multidrug resistance 99.6 5.9E-14 1.3E-18 120.4 13.6 162 120-295 26-188 (400)
118 PF11700 ATG22: Vacuole efflux 99.6 6.7E-13 1.5E-17 114.9 19.9 183 109-297 286-472 (477)
119 TIGR00897 2A0118 polyol permea 99.6 4.3E-14 9.3E-19 121.6 12.6 166 120-294 29-195 (402)
120 PRK09556 uhpT sugar phosphate 99.6 1.8E-14 3.8E-19 126.4 10.4 166 121-294 46-214 (467)
121 PRK11646 multidrug resistance 99.6 2.2E-13 4.8E-18 117.0 16.5 134 123-269 227-361 (400)
122 PRK15034 nitrate/nitrite trans 99.6 1.9E-13 4.2E-18 116.7 15.8 184 103-295 33-235 (462)
123 PRK10207 dipeptide/tripeptide 99.6 9.7E-14 2.1E-18 121.5 14.3 164 103-279 14-181 (489)
124 PRK11195 lysophospholipid tran 99.5 9.4E-13 2E-17 112.8 19.4 153 123-290 224-378 (393)
125 PRK10642 proline/glycine betai 99.5 2E-13 4.4E-18 120.3 15.6 179 112-296 24-216 (490)
126 TIGR00879 SP MFS transporter, 99.5 2.8E-14 6E-19 125.8 10.1 163 123-296 47-220 (481)
127 TIGR00924 yjdL_sub1_fam amino 99.5 1.3E-13 2.8E-18 120.6 13.9 155 118-285 24-185 (475)
128 PRK10054 putative transporter; 99.5 8.6E-14 1.9E-18 119.3 12.4 138 135-285 240-377 (395)
129 PRK05122 major facilitator sup 99.5 1.3E-13 2.9E-18 118.6 13.5 160 117-281 28-188 (399)
130 TIGR00806 rfc RFC reduced fola 99.5 4.6E-13 9.9E-18 112.8 15.6 175 105-296 29-206 (511)
131 TIGR00901 2A0125 AmpG-related 99.5 1.7E-13 3.6E-18 116.1 12.5 130 120-251 225-355 (356)
132 PRK09705 cynX putative cyanate 99.5 1.4E-13 3E-18 118.0 11.9 148 121-282 26-174 (393)
133 PRK12382 putative transporter; 99.5 2.1E-13 4.5E-18 117.1 12.9 151 120-275 31-182 (392)
134 PF07690 MFS_1: Major Facilita 99.5 3.1E-14 6.8E-19 120.4 7.4 212 4-258 132-352 (352)
135 cd06174 MFS The Major Facilita 99.5 2.4E-13 5.1E-18 114.9 12.7 157 119-288 14-170 (352)
136 TIGR00896 CynX cyanate transpo 99.5 6.1E-13 1.3E-17 112.6 15.1 137 120-270 213-351 (355)
137 PRK10406 alpha-ketoglutarate t 99.5 3E-13 6.5E-18 117.5 13.2 175 115-295 33-221 (432)
138 PRK08633 2-acyl-glycerophospho 99.5 6.5E-13 1.4E-17 129.3 15.7 130 122-264 250-381 (1146)
139 PF03825 Nuc_H_symport: Nucleo 99.5 2.6E-12 5.7E-17 109.1 17.4 188 91-295 199-398 (400)
140 TIGR00898 2A0119 cation transp 99.5 1.3E-13 2.8E-18 122.4 9.5 155 125-296 110-267 (505)
141 TIGR00885 fucP L-fucose:H+ sym 99.5 7.7E-13 1.7E-17 113.7 13.8 159 120-288 19-203 (410)
142 PF01306 LacY_symp: LacY proto 99.5 1.5E-13 3.3E-18 114.7 9.1 188 91-296 212-404 (412)
143 KOG2615|consensus 99.5 1.5E-13 3.3E-18 110.5 8.7 148 137-298 66-219 (451)
144 PRK11195 lysophospholipid tran 99.5 5.8E-13 1.2E-17 114.1 12.8 156 123-296 22-177 (393)
145 KOG2504|consensus 99.5 1.2E-13 2.6E-18 120.2 8.7 182 93-293 292-476 (509)
146 PRK06814 acylglycerophosphoeth 99.5 3.3E-13 7.1E-18 131.0 12.6 146 120-266 241-395 (1140)
147 PRK10429 melibiose:sodium symp 99.5 4.9E-13 1.1E-17 117.3 12.4 142 121-270 248-396 (473)
148 PRK15075 citrate-proton sympor 99.5 8.8E-13 1.9E-17 114.6 13.6 168 105-277 16-197 (434)
149 TIGR00899 2A0120 sugar efflux 99.5 6.3E-13 1.4E-17 113.5 12.4 164 120-296 13-180 (375)
150 PRK09584 tppB putative tripept 99.5 1.4E-12 2.9E-17 114.9 14.7 153 119-283 36-192 (500)
151 PTZ00207 hypothetical protein; 99.5 6.8E-13 1.5E-17 116.6 12.5 166 120-295 43-208 (591)
152 PF05977 MFS_3: Transmembrane 99.5 3.5E-12 7.5E-17 111.7 16.8 153 123-288 237-390 (524)
153 TIGR00880 2_A_01_02 Multidrug 99.5 3E-13 6.4E-18 98.4 8.0 137 145-294 4-140 (141)
154 KOG2532|consensus 99.5 1E-12 2.2E-17 113.0 12.4 151 134-295 68-219 (466)
155 COG2270 Permeases of the major 99.5 3.8E-12 8.3E-17 104.5 14.9 188 89-295 242-431 (438)
156 PRK15403 multidrug efflux syst 99.4 1.4E-11 2.9E-16 106.3 19.2 232 4-284 151-389 (413)
157 PRK09952 shikimate transporter 99.4 2.1E-12 4.6E-17 112.3 14.1 172 105-282 23-210 (438)
158 PRK10133 L-fucose transporter; 99.4 3.4E-12 7.4E-17 110.7 15.2 168 92-280 251-421 (438)
159 PRK09528 lacY galactoside perm 99.4 4.7E-12 1E-16 109.7 15.5 165 120-294 26-193 (420)
160 PRK09848 glucuronide transport 99.4 1.9E-12 4.1E-17 113.1 12.8 164 91-270 220-391 (448)
161 PRK03633 putative MFS family t 99.4 2.3E-12 4.9E-17 110.2 12.9 139 116-267 18-156 (381)
162 TIGR00805 oat sodium-independe 99.4 2.1E-12 4.6E-17 116.3 13.0 187 107-295 36-283 (633)
163 PF06609 TRI12: Fungal trichot 99.4 5.1E-13 1.1E-17 116.7 8.7 154 124-292 64-217 (599)
164 PRK11652 emrD multidrug resist 99.4 6.9E-12 1.5E-16 107.8 15.5 198 16-266 161-359 (394)
165 TIGR00886 2A0108 nitrite extru 99.4 3.1E-12 6.7E-17 108.9 12.0 124 120-253 241-365 (366)
166 KOG3764|consensus 99.4 4.5E-13 9.8E-18 108.5 6.1 151 135-298 102-253 (464)
167 TIGR01301 GPH_sucrose GPH fami 99.4 5.5E-12 1.2E-16 108.7 12.9 190 105-296 6-222 (477)
168 KOG0569|consensus 99.4 2.7E-12 5.8E-17 109.5 10.5 145 142-297 63-209 (485)
169 PF13347 MFS_2: MFS/sugar tran 99.4 3.4E-11 7.3E-16 104.6 17.6 205 16-271 176-388 (428)
170 PRK10133 L-fucose transporter; 99.4 9E-12 1.9E-16 108.1 14.0 135 120-264 42-176 (438)
171 COG2211 MelB Na+/melibiose sym 99.4 3.4E-11 7.3E-16 101.9 16.8 165 91-271 228-400 (467)
172 PRK11902 ampG muropeptide tran 99.4 4.7E-12 1E-16 109.1 11.8 169 115-296 10-185 (402)
173 PRK09669 putative symporter Ya 99.4 1.3E-11 2.9E-16 107.7 14.5 118 143-271 268-392 (444)
174 TIGR00901 2A0125 AmpG-related 99.4 5.5E-12 1.2E-16 106.9 11.4 164 121-296 5-182 (356)
175 KOG0255|consensus 99.4 6.1E-12 1.3E-16 112.0 11.8 147 134-297 113-259 (521)
176 TIGR01301 GPH_sucrose GPH fami 99.4 3.2E-11 6.9E-16 104.0 15.6 185 112-297 266-476 (477)
177 KOG1330|consensus 99.4 6E-12 1.3E-16 104.3 10.5 229 4-268 168-413 (493)
178 COG2807 CynX Cyanate permease 99.3 3.3E-11 7.2E-16 96.9 13.5 178 93-289 202-382 (395)
179 PRK15011 sugar efflux transpor 99.3 1.7E-11 3.7E-16 105.2 12.9 163 120-296 31-198 (393)
180 KOG2504|consensus 99.3 1.1E-11 2.3E-16 108.1 11.7 180 101-293 43-222 (509)
181 TIGR00882 2A0105 oligosacchari 99.3 1.4E-11 3.1E-16 105.9 11.9 168 119-294 17-185 (396)
182 TIGR00896 CynX cyanate transpo 99.3 7.2E-12 1.6E-16 106.1 10.0 146 120-280 16-163 (355)
183 TIGR00885 fucP L-fucose:H+ sym 99.3 5E-11 1.1E-15 102.5 15.1 131 122-268 250-382 (410)
184 PF06609 TRI12: Fungal trichot 99.3 3E-10 6.5E-15 99.7 19.8 135 120-265 326-465 (599)
185 PRK11010 ampG muropeptide tran 99.3 2.6E-11 5.7E-16 106.7 13.3 165 119-296 27-198 (491)
186 TIGR00788 fbt folate/biopterin 99.3 1.2E-11 2.6E-16 108.1 11.0 134 133-269 282-415 (468)
187 PRK11462 putative transporter; 99.3 1E-10 2.2E-15 102.1 16.0 119 141-270 265-390 (460)
188 PRK06814 acylglycerophosphoeth 99.3 6.1E-11 1.3E-15 115.4 14.7 144 141-295 54-197 (1140)
189 PRK08633 2-acyl-glycerophospho 99.3 8.4E-11 1.8E-15 114.7 15.2 117 141-267 49-165 (1146)
190 COG0738 FucP Fucose permease [ 99.3 9.6E-11 2.1E-15 95.7 12.4 174 91-285 228-402 (422)
191 KOG0254|consensus 99.3 3.9E-11 8.4E-16 106.4 10.6 142 141-297 91-234 (513)
192 PF05977 MFS_3: Transmembrane 99.3 7.8E-11 1.7E-15 103.3 12.2 154 124-285 30-183 (524)
193 TIGR00883 2A0106 metabolite-pr 99.2 1.3E-10 2.9E-15 99.8 12.9 140 150-295 46-193 (394)
194 TIGR00902 2A0127 phenyl propri 99.2 1E-10 2.2E-15 100.1 11.8 148 119-280 19-167 (382)
195 KOG2533|consensus 99.2 1.1E-10 2.4E-15 100.9 12.0 153 132-297 74-232 (495)
196 KOG4686|consensus 99.2 1.4E-10 3.1E-15 90.1 10.8 136 120-269 280-416 (459)
197 TIGR00792 gph sugar (Glycoside 99.2 5.7E-11 1.2E-15 103.6 8.9 169 121-296 16-198 (437)
198 PRK11128 putative 3-phenylprop 99.2 2.5E-10 5.4E-15 97.7 12.1 161 120-295 20-181 (382)
199 PF00083 Sugar_tr: Sugar (and 99.2 1.5E-13 3.2E-18 120.3 -8.2 146 141-297 48-196 (451)
200 KOG0252|consensus 99.2 4.2E-10 9.1E-15 93.4 11.0 108 136-249 81-188 (538)
201 COG3104 PTR2 Dipeptide/tripept 99.1 6.9E-11 1.5E-15 99.4 6.3 181 95-290 16-204 (498)
202 KOG2563|consensus 99.1 2.4E-09 5.1E-14 88.9 14.5 188 89-290 256-448 (480)
203 TIGR02718 sider_RhtX_FptX side 99.1 1.2E-09 2.7E-14 93.7 12.3 175 111-294 8-186 (390)
204 PF06813 Nodulin-like: Nodulin 99.1 5E-10 1.1E-14 87.9 8.8 165 119-293 17-182 (250)
205 PRK09669 putative symporter Ya 99.0 4.5E-10 9.7E-15 98.1 6.8 168 121-295 26-207 (444)
206 TIGR00924 yjdL_sub1_fam amino 99.0 6.6E-08 1.4E-12 85.0 17.9 148 141-292 314-468 (475)
207 PRK10429 melibiose:sodium symp 99.0 2.9E-09 6.3E-14 93.7 9.2 138 120-264 22-166 (473)
208 KOG3764|consensus 99.0 1.2E-09 2.5E-14 89.1 5.9 237 1-290 204-452 (464)
209 KOG3762|consensus 99.0 4.9E-09 1.1E-13 88.8 9.5 157 120-289 387-544 (618)
210 PTZ00207 hypothetical protein; 98.9 8.1E-08 1.8E-12 85.1 17.1 176 107-296 356-556 (591)
211 COG0738 FucP Fucose permease [ 98.9 3.9E-08 8.5E-13 80.8 13.3 135 122-266 31-165 (422)
212 PRK11462 putative transporter; 98.9 1.3E-08 2.9E-13 89.0 10.9 169 120-295 25-207 (460)
213 KOG0253|consensus 98.9 2.1E-08 4.5E-13 81.2 9.6 154 128-297 102-255 (528)
214 KOG3626|consensus 98.8 9.2E-08 2E-12 85.2 14.0 90 89-183 382-475 (735)
215 PRK10207 dipeptide/tripeptide 98.8 3.7E-07 8.1E-12 80.4 17.2 118 143-263 313-437 (489)
216 PF13347 MFS_2: MFS/sugar tran 98.8 5.6E-09 1.2E-13 90.8 5.5 167 122-294 19-200 (428)
217 KOG2816|consensus 98.8 2E-07 4.2E-12 80.5 14.2 137 148-300 71-207 (463)
218 PRK09584 tppB putative tripept 98.8 2.5E-07 5.5E-12 81.8 15.4 118 141-262 318-439 (500)
219 PF05631 DUF791: Protein of un 98.8 1.3E-07 2.8E-12 77.1 12.3 156 129-297 59-221 (354)
220 PF01306 LacY_symp: LacY proto 98.8 1.6E-08 3.6E-13 84.9 6.6 160 119-290 22-186 (412)
221 TIGR00788 fbt folate/biopterin 98.8 6.5E-08 1.4E-12 84.8 10.4 168 113-296 35-212 (468)
222 TIGR00889 2A0110 nucleoside tr 98.7 1E-07 2.2E-12 82.5 11.2 68 120-187 18-87 (418)
223 KOG2615|consensus 98.7 4.8E-07 1E-11 73.9 13.4 121 132-265 290-412 (451)
224 KOG2325|consensus 98.7 4.2E-08 9.1E-13 83.7 7.1 160 129-297 59-234 (488)
225 PF03137 OATP: Organic Anion T 98.6 5.6E-09 1.2E-13 92.1 0.0 172 90-267 296-514 (539)
226 COG2807 CynX Cyanate permease 98.6 6.3E-07 1.4E-11 72.8 11.2 153 121-288 29-182 (395)
227 PRK09848 glucuronide transport 98.6 4.6E-07 1E-11 79.4 11.4 125 122-252 26-157 (448)
228 COG2211 MelB Na+/melibiose sym 98.6 4.7E-07 1E-11 77.2 10.0 169 120-295 28-210 (467)
229 PF03092 BT1: BT1 family; Int 98.6 4.3E-08 9.3E-13 84.8 3.6 131 136-269 252-382 (433)
230 TIGR00926 2A1704 Peptide:H+ sy 98.5 1.6E-06 3.5E-11 78.3 13.2 155 130-289 14-179 (654)
231 PF12832 MFS_1_like: MFS_1 lik 98.5 3.5E-07 7.6E-12 57.8 6.5 62 117-178 13-74 (77)
232 TIGR00805 oat sodium-independe 98.5 6.7E-07 1.5E-11 81.2 10.5 91 90-185 321-415 (633)
233 PF03825 Nuc_H_symport: Nucleo 98.5 7.1E-07 1.5E-11 76.3 8.7 64 120-183 18-82 (400)
234 TIGR00806 rfc RFC reduced fola 98.4 3.6E-06 7.9E-11 71.9 10.4 156 90-261 253-409 (511)
235 PF03209 PUCC: PUCC protein; 98.3 2.7E-05 5.9E-10 65.0 14.4 163 89-266 198-362 (403)
236 PF11700 ATG22: Vacuole efflux 98.3 3.1E-05 6.8E-10 67.7 14.3 144 143-297 74-252 (477)
237 PF03092 BT1: BT1 family; Int 98.2 2.1E-05 4.5E-10 68.3 11.5 157 127-294 13-177 (433)
238 PF03209 PUCC: PUCC protein; 98.2 8.7E-06 1.9E-10 67.8 8.4 137 132-270 8-154 (403)
239 PF06963 FPN1: Ferroportin1 (F 98.2 0.00018 3.9E-09 61.7 16.4 130 125-257 279-408 (432)
240 KOG2816|consensus 98.1 1.1E-05 2.4E-10 69.8 8.1 119 134-266 272-391 (463)
241 KOG2563|consensus 98.1 3E-05 6.6E-10 65.1 9.9 124 137-267 77-202 (480)
242 PF03137 OATP: Organic Anion T 98.0 1.3E-06 2.9E-11 77.3 -0.4 145 120-264 19-200 (539)
243 PF05978 UNC-93: Ion channel r 98.0 0.00063 1.4E-08 49.6 13.4 111 137-261 35-145 (156)
244 TIGR00769 AAA ADP/ATP carrier 97.9 0.00053 1.2E-08 59.6 14.0 126 140-265 44-189 (472)
245 PRK15462 dipeptide/tripeptide 97.8 0.0013 2.7E-08 57.9 15.7 120 141-264 310-437 (493)
246 PF01770 Folate_carrier: Reduc 97.8 0.0013 2.9E-08 55.7 14.0 178 103-297 5-186 (412)
247 PF01770 Folate_carrier: Reduc 97.8 0.00019 4.1E-09 60.6 8.9 148 91-256 239-391 (412)
248 KOG3626|consensus 97.7 0.00039 8.3E-09 62.8 10.9 144 122-265 115-297 (735)
249 PF06779 DUF1228: Protein of u 97.7 0.00024 5.3E-09 45.3 6.5 70 120-189 8-77 (85)
250 COG0477 ProP Permeases of the 97.5 0.0016 3.4E-08 53.7 11.0 139 123-272 21-165 (338)
251 KOG2325|consensus 97.5 6.1E-05 1.3E-09 64.8 2.1 58 228-285 411-468 (488)
252 COG3104 PTR2 Dipeptide/tripept 97.4 0.028 6.1E-07 48.6 17.5 148 140-290 325-485 (498)
253 KOG0637|consensus 97.4 0.00012 2.6E-09 61.8 3.2 157 103-261 32-199 (498)
254 PF02487 CLN3: CLN3 protein; 97.3 0.0096 2.1E-07 50.6 12.9 56 205-261 336-391 (402)
255 KOG4686|consensus 97.2 0.00015 3.2E-09 57.4 1.2 130 130-269 70-200 (459)
256 PF03219 TLC: TLC ATP/ADP tran 97.1 0.016 3.5E-07 50.9 12.8 116 151-266 71-205 (491)
257 PF06963 FPN1: Ferroportin1 (F 97.0 0.036 7.8E-07 47.9 13.7 171 122-292 20-200 (432)
258 KOG3810|consensus 97.0 0.023 5E-07 46.7 11.6 153 91-259 226-380 (433)
259 COG2270 Permeases of the major 96.9 0.0068 1.5E-07 51.1 8.8 107 142-258 61-168 (438)
260 PF07672 MFS_Mycoplasma: Mycop 96.9 0.03 6.4E-07 44.2 11.3 20 16-38 40-59 (267)
261 KOG1237|consensus 96.7 0.12 2.7E-06 46.6 15.6 159 129-288 63-241 (571)
262 KOG3098|consensus 96.7 0.032 6.9E-07 48.4 11.1 119 142-262 282-409 (461)
263 TIGR01272 gluP glucose/galacto 96.7 0.0023 5.1E-08 53.1 4.3 79 206-285 12-106 (310)
264 KOG3762|consensus 96.6 0.0017 3.6E-08 56.3 3.1 63 119-181 26-88 (618)
265 KOG3098|consensus 96.5 0.039 8.5E-07 47.9 10.8 111 137-261 48-158 (461)
266 PF00854 PTR2: POT family; In 96.5 0.0064 1.4E-07 52.0 5.8 116 170-289 2-120 (372)
267 PF13000 Acatn: Acetyl-coenzym 96.2 0.065 1.4E-06 46.6 9.9 40 228-267 428-467 (544)
268 KOG1479|consensus 96.1 0.57 1.2E-05 40.0 14.8 29 106-134 20-48 (406)
269 TIGR00939 2a57 Equilibrative N 96.0 0.02 4.3E-07 49.8 6.5 54 205-259 373-426 (437)
270 KOG4332|consensus 96.0 0.0085 1.8E-07 47.4 3.5 55 129-183 62-116 (454)
271 PF01733 Nucleoside_tran: Nucl 95.7 0.0021 4.6E-08 53.3 -0.7 113 144-258 187-301 (309)
272 COG3202 ATP/ADP translocase [E 95.6 0.72 1.6E-05 40.2 13.9 129 138-266 60-209 (509)
273 PRK03612 spermidine synthase; 95.5 0.27 5.8E-06 44.1 11.6 46 240-285 144-190 (521)
274 PF02487 CLN3: CLN3 protein; 95.2 0.15 3.3E-06 43.5 8.7 132 144-294 64-197 (402)
275 PF13000 Acatn: Acetyl-coenzym 95.1 0.18 3.9E-06 43.9 8.8 55 116-175 12-76 (544)
276 KOG3574|consensus 95.0 0.59 1.3E-05 39.5 11.1 41 228-268 392-432 (510)
277 KOG3574|consensus 94.7 0.22 4.7E-06 41.9 7.8 58 114-174 41-103 (510)
278 KOG1479|consensus 94.6 0.2 4.4E-06 42.5 7.7 49 204-253 343-391 (406)
279 TIGR00939 2a57 Equilibrative N 93.2 1.7 3.8E-05 38.1 11.1 27 149-175 55-81 (437)
280 KOG0637|consensus 92.8 0.12 2.6E-06 44.4 3.4 35 143-177 336-370 (498)
281 TIGR00769 AAA ADP/ATP carrier 91.7 9 0.0002 34.0 13.7 39 143-181 307-345 (472)
282 KOG4332|consensus 90.6 1.4 3E-05 35.5 6.8 100 142-247 285-386 (454)
283 PF05631 DUF791: Protein of un 88.3 6.3 0.00014 33.2 9.4 69 91-165 236-304 (354)
284 PRK10697 DNA-binding transcrip 87.0 0.98 2.1E-05 31.0 3.4 31 16-46 36-68 (118)
285 KOG2601|consensus 86.4 12 0.00026 31.9 9.9 47 137-183 61-107 (503)
286 KOG2881|consensus 85.8 3.9 8.5E-05 32.3 6.4 33 150-182 251-283 (294)
287 PF11947 DUF3464: Protein of u 83.5 3.6 7.8E-05 29.8 5.1 90 161-256 56-145 (153)
288 COG5336 Uncharacterized protei 83.2 6 0.00013 26.5 5.5 34 150-183 53-87 (116)
289 PF03219 TLC: TLC ATP/ADP tran 83.2 34 0.00074 30.7 15.0 42 142-183 322-363 (491)
290 PRK09609 hypothetical protein; 82.6 26 0.00056 28.9 13.5 33 16-51 78-111 (312)
291 COG3202 ATP/ADP translocase [E 82.1 32 0.00069 30.6 11.0 43 145-187 327-370 (509)
292 TIGR02978 phageshock_pspC phag 81.3 2 4.4E-05 29.8 3.1 31 16-46 31-63 (121)
293 PF04024 PspC: PspC domain; I 80.9 2.7 5.9E-05 25.1 3.1 30 16-45 31-60 (61)
294 COG5336 Uncharacterized protei 80.7 3.8 8.2E-05 27.4 3.9 36 235-270 36-71 (116)
295 KOG3880|consensus 79.2 3.1 6.8E-05 34.2 3.9 56 206-261 343-398 (409)
296 PF02990 EMP70: Endomembrane p 76.9 59 0.0013 29.6 11.8 68 92-165 251-319 (521)
297 KOG3880|consensus 75.3 2.3 5.1E-05 34.9 2.2 133 142-294 65-201 (409)
298 PF03547 Mem_trans: Membrane t 73.9 14 0.0003 31.8 6.9 20 148-167 4-23 (385)
299 PF10183 ESSS: ESSS subunit of 72.4 7.3 0.00016 26.3 3.8 27 16-45 59-85 (105)
300 COG2119 Predicted membrane pro 69.2 29 0.00062 26.1 6.4 36 147-182 142-177 (190)
301 TIGR00926 2A1704 Peptide:H+ sy 68.9 1E+02 0.0023 29.0 11.8 14 16-32 160-173 (654)
302 TIGR00880 2_A_01_02 Multidrug 68.3 36 0.00079 23.4 7.6 37 142-178 90-126 (141)
303 KOG4830|consensus 66.2 6.3 0.00014 31.6 2.7 50 122-171 35-93 (412)
304 PF02694 UPF0060: Uncharacteri 65.1 27 0.00059 23.5 5.1 48 139-186 54-101 (107)
305 PRK02237 hypothetical protein; 62.2 31 0.00067 23.3 4.9 48 139-186 56-103 (109)
306 PRK10263 DNA translocase FtsK; 57.6 57 0.0012 33.1 7.8 21 147-167 60-80 (1355)
307 KOG1278|consensus 57.0 65 0.0014 29.1 7.3 38 129-166 348-386 (628)
308 COG1422 Predicted membrane pro 56.8 88 0.0019 24.0 11.0 25 16-43 46-70 (201)
309 PF06123 CreD: Inner membrane 56.0 78 0.0017 27.9 7.7 41 148-188 300-340 (430)
310 PF06570 DUF1129: Protein of u 55.6 96 0.0021 24.1 15.3 9 155-163 123-131 (206)
311 TIGR02230 ATPase_gene1 F0F1-AT 53.6 66 0.0014 21.6 6.8 31 153-183 57-87 (100)
312 KOG3810|consensus 50.1 63 0.0014 27.6 6.0 126 157-296 60-186 (433)
313 PRK11715 inner membrane protei 50.0 1E+02 0.0022 27.2 7.5 41 148-188 306-346 (436)
314 PF06027 DUF914: Eukaryotic pr 49.6 1.6E+02 0.0035 24.9 10.4 12 101-112 131-142 (334)
315 PF05297 Herpes_LMP1: Herpesvi 48.5 5.9 0.00013 31.7 0.0 13 285-297 178-190 (381)
316 KOG0055|consensus 47.3 3E+02 0.0065 28.1 10.7 15 16-33 808-822 (1228)
317 PF07857 DUF1632: CEO family ( 47.2 43 0.00094 26.9 4.6 25 237-261 75-99 (254)
318 cd02432 Nodulin-21_like_1 Nodu 45.4 1.5E+02 0.0032 23.3 13.9 36 148-183 170-205 (218)
319 cd02434 Nodulin-21_like_3 Nodu 39.1 1.9E+02 0.0042 22.8 13.8 32 152-183 180-211 (225)
320 PF06645 SPC12: Microsomal sig 38.9 11 0.00023 23.7 0.1 20 4-23 19-41 (76)
321 COG3086 RseC Positive regulato 38.5 1.5E+02 0.0033 21.4 6.1 40 135-174 68-107 (150)
322 PF01405 PsbT: Photosystem II 38.3 53 0.0011 16.1 2.6 13 34-46 16-28 (29)
323 PF01914 MarC: MarC family int 38.0 1.8E+02 0.0039 22.5 6.7 50 232-281 29-79 (203)
324 PF10183 ESSS: ESSS subunit of 37.2 26 0.00057 23.7 1.8 36 263-298 52-87 (105)
325 PF12273 RCR: Chitin synthesis 35.9 25 0.00053 24.9 1.6 10 272-281 2-11 (130)
326 PF12832 MFS_1_like: MFS_1 lik 35.7 1.1E+02 0.0023 19.2 4.3 36 240-275 34-69 (77)
327 PF01733 Nucleoside_tran: Nucl 34.4 13 0.00029 30.9 0.0 10 228-238 20-29 (309)
328 PF01988 VIT1: VIT family; In 33.7 2.3E+02 0.005 22.1 14.9 56 122-183 146-201 (213)
329 PRK11875 psbT photosystem II r 33.4 68 0.0015 15.9 2.5 12 35-46 17-28 (31)
330 PF04281 Tom22: Mitochondrial 32.9 47 0.001 23.7 2.5 24 230-253 60-83 (137)
331 COG2981 CysZ Uncharacterized p 31.8 1.8E+02 0.0038 23.2 5.5 20 147-166 88-107 (250)
332 CHL00031 psbT photosystem II p 31.2 80 0.0017 16.0 2.4 12 35-46 17-28 (33)
333 COG3462 Predicted membrane pro 30.9 1.4E+02 0.0031 20.2 4.2 10 55-64 88-97 (117)
334 PF13493 DUF4118: Domain of un 30.6 92 0.002 20.7 3.7 25 145-169 81-105 (105)
335 COG1268 BioY Uncharacterized c 30.1 1.9E+02 0.0042 22.0 5.5 23 146-168 89-111 (184)
336 KOG4255|consensus 29.4 3.6E+02 0.0078 23.0 10.6 20 170-189 80-99 (439)
337 PF04226 Transgly_assoc: Trans 28.8 1E+02 0.0022 17.3 3.0 11 252-262 6-16 (48)
338 KOG4112|consensus 28.7 92 0.002 20.4 3.0 15 256-270 37-51 (101)
339 TIGR00986 3a0801s05tom22 mitoc 28.1 95 0.0021 22.3 3.3 23 230-252 58-80 (145)
340 PRK00888 ftsB cell division pr 28.0 1E+02 0.0022 20.9 3.4 22 47-68 29-50 (105)
341 PF14851 FAM176: FAM176 family 27.9 57 0.0012 23.9 2.3 14 276-289 27-40 (153)
342 PF05297 Herpes_LMP1: Herpesvi 27.2 21 0.00045 28.8 0.0 13 165-177 71-83 (381)
343 TIGR01667 YCCS_YHJK integral m 26.0 3.8E+02 0.0083 25.7 7.8 31 157-187 41-75 (701)
344 KOG3097|consensus 26.0 2E+02 0.0044 24.5 5.3 44 137-180 308-351 (390)
345 PF08285 DPM3: Dolichol-phosph 25.9 1.8E+02 0.0039 19.1 4.1 8 16-23 38-45 (91)
346 PF11085 YqhR: Conserved membr 25.1 3E+02 0.0065 20.7 7.6 36 148-183 77-113 (173)
347 KOG3097|consensus 24.8 4.5E+02 0.0097 22.6 11.6 35 148-182 67-101 (390)
348 PRK10263 DNA translocase FtsK; 23.7 7.7E+02 0.017 25.8 9.4 29 17-48 24-52 (1355)
349 KOG2881|consensus 23.1 1.8E+02 0.0038 23.6 4.3 9 300-308 163-171 (294)
350 TIGR03733 lanti_perm_MutG lant 23.0 4E+02 0.0086 21.3 10.1 31 148-178 138-168 (248)
351 PF12670 DUF3792: Protein of u 22.8 2.6E+02 0.0057 19.2 12.2 37 143-179 38-74 (116)
352 TIGR03732 lanti_perm_MutE lant 22.6 4E+02 0.0087 21.2 6.7 25 153-177 137-161 (241)
353 KOG1237|consensus 22.6 3E+02 0.0066 25.5 6.4 40 229-268 482-521 (571)
354 PRK09174 F0F1 ATP synthase sub 22.4 2.8E+02 0.006 21.6 5.3 15 28-42 62-76 (204)
355 COG2274 SunT ABC-type bacterio 22.4 6.8E+02 0.015 24.1 8.6 24 143-166 161-184 (709)
356 PRK10527 hypothetical protein; 22.2 1.5E+02 0.0034 20.8 3.5 27 17-46 3-31 (125)
357 PRK04949 putative sulfate tran 21.7 4.4E+02 0.0095 21.3 7.7 20 147-166 90-109 (251)
358 COG4262 Predicted spermidine s 21.5 5.4E+02 0.012 22.4 10.1 30 135-164 39-68 (508)
359 PF01788 PsbJ: PsbJ; InterPro 21.4 1.5E+02 0.0032 15.8 3.8 19 163-181 2-20 (40)
360 PF11511 RhodobacterPufX: Intr 21.0 1.8E+02 0.0039 17.8 3.0 9 289-297 49-57 (67)
361 COG1742 Uncharacterized conser 20.1 1.3E+02 0.0029 20.2 2.6 44 139-182 55-98 (109)
No 1
>KOG0569|consensus
Probab=100.00 E-value=8.7e-37 Score=256.87 Aligned_cols=300 Identities=29% Similarity=0.418 Sum_probs=252.2
Q ss_pred eechhhhhhhcch--------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhh-cCChHHHHHHHHHHhCCCcchHH
Q psy17628 3 VSGILYTYVIGSL--------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLS-KKRRKDAEKSLLILRGPNYDIHG 73 (338)
Q Consensus 3 ~~G~~~~~~i~~~--------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~-~~~~~~a~~~l~~~~~~~~~~~~ 73 (338)
++|.+++..++.- |++.+.+. .++.++.++...++||||||+.. +++.++|++.++++++.+++.++
T Consensus 162 ~~g~ll~~~~~l~~ilGt~~~W~~l~~~~----~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~ 237 (485)
T KOG0569|consen 162 VIGILLGQVLGLPSLLGTEDLWPYLLAFP----LIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAE 237 (485)
T ss_pred HHHHHHHHHHccHHhcCCCcchHHHHHHH----HHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhH
Confidence 4566666555443 99999999 55566588889999999999988 89999999999999998654443
Q ss_pred HHHHHHHHHH--HhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHH
Q psy17628 74 ELDELQKELD--IQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFI 151 (338)
Q Consensus 74 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 151 (338)
..+..++.++ .+++++.+++++++++..|+...+.+.+....++.+.+....|...++.+.|++..++.+.+...++.
T Consensus 238 ~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v 317 (485)
T KOG0569|consen 238 IEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIV 317 (485)
T ss_pred HHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3332222222 22236678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeee
Q psy17628 152 QVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMG 231 (338)
Q Consensus 152 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
..+.++++.++.||+|||++++.+..++.+..+++.......+.. .....+..+...+++...++.+.+|++|-+.+
T Consensus 318 ~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~---~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~a 394 (485)
T KOG0569|consen 318 NLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF---GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGA 394 (485)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHH
Confidence 999999999999999999999999999999888877664443322 02233455677788888999999999999999
Q ss_pred ccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCCCCCCHHHHHHHhccc
Q psy17628 232 ELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGV 310 (338)
Q Consensus 232 e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (338)
|++|++.|..++++.....++..++....++.+.+..|. ..|+.+.+.+.+..+..+.++||||+|+..|+.++.++.
T Consensus 395 ELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 395 ELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 999999999999999999999999999999999998887 678888888999999999999999999999888777655
No 2
>KOG0254|consensus
Probab=99.96 E-value=2e-27 Score=209.49 Aligned_cols=302 Identities=29% Similarity=0.473 Sum_probs=232.3
Q ss_pred eechhhhhhhcch-------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhC-CCcchHHH
Q psy17628 3 VSGILYTYVIGSL-------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRG-PNYDIHGE 74 (338)
Q Consensus 3 ~~G~~~~~~i~~~-------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~-~~~~~~~~ 74 (338)
++|.++++.++.. ||..+.+. .+.+++ ..+..+++||||+|+.++++.+++++.++++++ .+.+.+.+
T Consensus 188 ~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~---~i~~~~-~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~ 263 (513)
T KOG0254|consen 188 TIGILLGYCINYGTSKVYAGWRIPLGLA---LIPAVI-LALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVE 263 (513)
T ss_pred HHHHHHHHHHhhhhccCCccHHHHHHHH---HHHHHH-HHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHH
Confidence 3455555555433 99999888 555555 444588999999999999999999999999998 34455555
Q ss_pred HHHHHHHHH-Hh-h-hhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHH
Q psy17628 75 LDELQKELD-IQ-A-QKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFI 151 (338)
Q Consensus 75 ~~~~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 151 (338)
.++.+.... +. . ..+..+.++++ +..+++..+...+..+.++.+++...+|.+.+++..|.+... .....+.++.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v 341 (513)
T KOG0254|consen 264 LELLKIKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVV 341 (513)
T ss_pred HHHHHHHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHH
Confidence 555442111 11 1 11123555555 557888999999999999999999999999999999876544 6677788888
Q ss_pred HHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeee
Q psy17628 152 QVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMG 231 (338)
Q Consensus 152 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
.+++..++.++.||+|||++++.+...+.++.++++........+........+..+...+++...++.++++++|.+.+
T Consensus 342 ~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~s 421 (513)
T KOG0254|consen 342 NFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVS 421 (513)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhh
Confidence 89999999999999999999999999999999988877555433200122345667777778888889999999999999
Q ss_pred ccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHH-HHHhhccCCCCCCHHHHHHHhccc
Q psy17628 232 ELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTF-FVYFVVPETKNKSLQQIQDELSGV 310 (338)
Q Consensus 232 e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 310 (338)
|.+|.+.|+++.++....+++.+.+.........+..+....|..++.++.+... ..+++.|||+++..++.++...+.
T Consensus 422 Eifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~ 501 (513)
T KOG0254|consen 422 EIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG 501 (513)
T ss_pred ccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence 9999999999999999999999888877776666655444567777777777776 677889999999999888766544
No 3
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.96 E-value=8e-28 Score=211.91 Aligned_cols=271 Identities=20% Similarity=0.213 Sum_probs=170.3
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChH-HHHHHHHHHhCCCcc-hHHHHHHHHHHHHHhhhhhhHHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRK-DAEKSLLILRGPNYD-IHGELDELQKELDIQAQKKKSLV 93 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~-~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
||++|.+. .++.++.++.++++||||||+..+++.+ ++.+.+++..+.+.+ ..++.++.++ +++..+.+++
T Consensus 203 WR~~~~~~----~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 275 (502)
T TIGR00887 203 WRILIGFG----AVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKAST---AVEVPKASWS 275 (502)
T ss_pred HHHHHHHH----HHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhc---cccchhhhHH
Confidence 99999877 4555557777889999999999887764 466666666543221 1111111111 1111223577
Q ss_pred HHHhCcc---chHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcch------------hhHHHHHHHHHHHHH
Q psy17628 94 EIYSNKA---TVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNY------------GQNIVGFIQVIMTFF 158 (338)
Q Consensus 94 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~ 158 (338)
++++++. .++..+......+. ....++....+.|.++++.|++..+.+. ...+..++.+++.++
T Consensus 276 ~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 354 (502)
T TIGR00887 276 DFFTHFFKWRHGKHLLGTAGSWFL-LDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWV 354 (502)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776431 22222222222222 2223445666789998888876553321 233344566778899
Q ss_pred HHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchh
Q psy17628 159 SSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV 238 (338)
Q Consensus 159 ~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 238 (338)
.++++||+|||++++.+..+.+++..+++...... . .. .......+.....+.+..+..+.+.+|.+|++.
T Consensus 355 ~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~--~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~ 425 (502)
T TIGR00887 355 TVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL--S------TH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY 425 (502)
T ss_pred HHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc--c------hh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhH
Confidence 99999999999999888877777766555432110 0 01 111222222223344556666678899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------ccceeehhhhHHHHHHHHHHHhhccCCCCCCHHHHH
Q psy17628 239 KGLALGVICILGSLIEFVVVKTFDDVERAF----------GTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQ 304 (338)
Q Consensus 239 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (338)
|+++.|+.+.++++++++++.+.+.+.+.. ++...+++++++++++.+. ++++|||++++.+|.+
T Consensus 426 R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~ 500 (502)
T TIGR00887 426 RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELS 500 (502)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhh
Confidence 999999999999999999999999888743 2334566777766666544 4567999998876643
No 4
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.95 E-value=1.8e-32 Score=239.15 Aligned_cols=295 Identities=32% Similarity=0.527 Sum_probs=214.3
Q ss_pred ceechhhhhhhcch---------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchH
Q psy17628 2 VVSGILYTYVIGSL---------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIH 72 (338)
Q Consensus 2 ~~~G~~~~~~i~~~---------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~ 72 (338)
+.+|.+++..++.. ||+.+.+. .+++++ .++..+++||||||+..+++.+|+++.++++++++.+.+
T Consensus 147 ~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~---~~~~l~-~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~ 222 (451)
T PF00083_consen 147 WALGILLASLIGYIVSYYSDNWGWRILLIFG---AIPSLL-VLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDE 222 (451)
T ss_pred ccccccccccccccccccccccccccccccc---cccccc-ccccccccccccceecccccccccccccccccccccccc
Confidence 45666666665442 99999999 555544 666778899999999999999999999999766533222
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHH
Q psy17628 73 GELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQ 152 (338)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 152 (338)
+ .++..++.++.++.+.+++++++++..+++.+..+.+.......+.+....|.+.+.++.|.+.. ........+..
T Consensus 223 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~ 299 (451)
T PF00083_consen 223 E-IEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVN 299 (451)
T ss_pred c-ccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccc
Confidence 2 22222222222222256778888766667777777777777777777788888888888876655 34445556777
Q ss_pred HHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeec
Q psy17628 153 VIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGE 232 (338)
Q Consensus 153 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 232 (338)
.++.+++.++.||+|||++++.+..+++++.+.++......... ........+....+....++.++.+..+.+.+|
T Consensus 300 ~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~E 376 (451)
T PF00083_consen 300 FLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSS---SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAE 376 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc---ccccccccceeeeeccccccccccccccccccc
Confidence 78888888999999999999999888888777665111111000 001123334444455556666788888889999
Q ss_pred cCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q psy17628 233 LFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDE 306 (338)
Q Consensus 233 ~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (338)
.+|++.|+++.++....+++++.+.+.+.+.+.+..+....+.++++++++..++.++++|||++++++|.+++
T Consensus 377 lfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 377 LFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 99999999999999999999999999888888777764567778888888888888889999999999988764
No 5
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.95 E-value=1.4e-26 Score=207.54 Aligned_cols=263 Identities=16% Similarity=0.212 Sum_probs=177.6
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcch----HHHH--HHHHHHHHH-----
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDI----HGEL--DELQKELDI----- 84 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~----~~~~--~~~~~~~~~----- 84 (338)
||++|++. +++.++.++.++++||||+|+..+++.+++.+.++++++.+... .... ...+.....
T Consensus 333 WR~l~~i~----~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (742)
T TIGR01299 333 WRVFVIVC----AFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIE 408 (742)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhc
Confidence 99999888 45556577778889999999999999999999999998765321 1100 000000000
Q ss_pred ---hhh----------------hhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-----------
Q psy17628 85 ---QAQ----------------KKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT----------- 134 (338)
Q Consensus 85 ---~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 134 (338)
+.. ...+++++++.+ ++++++++..+++...+ +++.+..|+|.++++.
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~-~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~~~~~~~~~~~~~~~ 486 (742)
T TIGR01299 409 IESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPE-VREITIKLMGVWFTLSF-GYYGLSVWFPDMIKHLQADDYAALTKN 486 (742)
T ss_pred ccccccchhhcchhhhhhhhhhHHHHHHHHcCcc-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 000 001455666554 77777777777665554 5888999999875431
Q ss_pred -------------------------------cC-----C---------------CC------------------------
Q psy17628 135 -------------------------------NS-----K---------------II------------------------ 139 (338)
Q Consensus 135 -------------------------------g~-----~---------------~~------------------------ 139 (338)
|+ + ..
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 566 (742)
T TIGR01299 487 FPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKF 566 (742)
T ss_pred ccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhh
Confidence 00 0 00
Q ss_pred -----------------------------CcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHH
Q psy17628 140 -----------------------------SPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYF 190 (338)
Q Consensus 140 -----------------------------~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 190 (338)
.......+.+++.+++.+++|+++||+|||++++.+.++.+++.+++++..
T Consensus 567 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~ 646 (742)
T TIGR01299 567 IDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN 646 (742)
T ss_pred hhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 012224566788899999999999999999999999888888877665531
Q ss_pred HHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628 191 YLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT 270 (338)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (338)
.....++..++++++.+..+ +..+++++|++|++.|++++|+.+..+.+|++++|.+.+.+.+. +.
T Consensus 647 ------------s~~~ll~~~~l~g~~~~~~~-~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~ 712 (742)
T TIGR01299 647 ------------SESAMIALLCLFGGLSIAAW-NALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TK 712 (742)
T ss_pred ------------cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh
Confidence 11222333334444434333 34448899999999999999999999999999999999887764 34
Q ss_pred ceeehhhhHHHHHHHHHHHhhccCCCCCC
Q psy17628 271 GVAFGTFAVYCIIGTFFVYFVVPETKNKS 299 (338)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (338)
..++++.+++.++++++.+ ++|||+++.
T Consensus 713 ~~pf~i~a~~lll~~ll~~-~LPET~~~~ 740 (742)
T TIGR01299 713 AAPILFASAALACGGLLAL-KLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence 4566666666666555444 479998764
No 6
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.95 E-value=4.2e-25 Score=194.34 Aligned_cols=275 Identities=27% Similarity=0.466 Sum_probs=184.1
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
||++|++. +++.++ .++..+++||+|+|+..+++.+++++..++..+.+. .+...++.++...++.. ..+..
T Consensus 193 Wr~~f~~~---~~~~~~-~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~ 264 (479)
T PRK10077 193 WRYMFASE---AIPALL-FLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL-ATQALQEIKHSLDHGRK---TGGKL 264 (479)
T ss_pred hHHHHHHH---HHHHHH-HHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh-HHHHHHHHHHHHHHhhh---hhhhh
Confidence 99999998 666555 455577899999999888888887777776654322 11111111111110000 00111
Q ss_pred HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHH
Q psy17628 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLIS 175 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 175 (338)
+.. .............+....+++...++.|.+.++.|.+...........++..+++.++.++++||+|||++++.+
T Consensus 265 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~ 342 (479)
T PRK10077 265 LMF--GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIG 342 (479)
T ss_pred cch--hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHh
Confidence 110 111122222333444455566677888999888888877777777788889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHH
Q psy17628 176 DICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEF 255 (338)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~ 255 (338)
.++.+++.+.+....... ...........++..+.+..+.+..+.+++|.+|++.|++++|+.+..++++..
T Consensus 343 ~~~~~v~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~ 414 (479)
T PRK10077 343 ALGMAIGMFSLGTAFYTQ--------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANY 414 (479)
T ss_pred HHHHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHH
Confidence 988888777665432111 111222333444444454455566668999999999999999999999999998
Q ss_pred HHHHHHHHHH------HhcccceeehhhhHHHHHHHHHHHhhccCCCCCCHHHHHHHhc
Q psy17628 256 VVVKTFDDVE------RAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELS 308 (338)
Q Consensus 256 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (338)
+++.+.+.+. +..++...+++.+++++++.++.+++.||+++++.+|.++..+
T Consensus 415 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 473 (479)
T PRK10077 415 FVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWE 473 (479)
T ss_pred HHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHh
Confidence 8877776443 4677777788888777777777777789999988877665543
No 7
>KOG0253|consensus
Probab=99.94 E-value=1.2e-25 Score=178.10 Aligned_cols=279 Identities=14% Similarity=0.145 Sum_probs=189.9
Q ss_pred Cceechhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcc----
Q psy17628 1 MVVSGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYD---- 70 (338)
Q Consensus 1 ~~~~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~---- 70 (338)
+|++|.+....+.+. |||..... + .++.++....+++||||||...++++++|.+.++++.+.|..
T Consensus 208 ~waig~v~ea~law~vm~~~gwr~~l~~~---~-~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlpl 283 (528)
T KOG0253|consen 208 FWAIGQVFEALLAWGVMSNFGWRYLLFTS---S-TPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPL 283 (528)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH---H-hHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCc
Confidence 477888888887776 99999988 4 777767888899999999999999999999999998765431
Q ss_pred ------hHHHHHHH----HHHH-HHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhcc----
Q psy17628 71 ------IHGELDEL----QKEL-DIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATN---- 135 (338)
Q Consensus 71 ------~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---- 135 (338)
...+.++. .+.+ +..++......+++. |+.++..+.....++...+. ++........+++...
T Consensus 284 gvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~ 361 (528)
T KOG0253|consen 284 GVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPL 361 (528)
T ss_pred ceeeeehhhhhhhhhhchhhhhhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCcccc
Confidence 11111111 1111 111223345566665 44777777777766665554 3333333333332211
Q ss_pred ----------------CCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 136 ----------------SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 136 ----------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
.+...-..-..+..+..+.|.++.+++.||+|||+.+....++++++.+++...
T Consensus 362 ~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c---------- 431 (528)
T KOG0253|consen 362 YNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC---------- 431 (528)
T ss_pred chhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh----------
Confidence 011111223456778889999999999999999999999998888887766543
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV 279 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (338)
.......+..+..-.+.+.++... |+|..|++|+..|+++.|.+...+.+|+++.|.+. +........+..+++.
T Consensus 432 --~~rn~~tvllf~arafisg~fqva-YvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~ 506 (528)
T KOG0253|consen 432 --KTRNAYTVLLFTARAFISGAFQVA-YVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGA 506 (528)
T ss_pred --cCcchhHHHHHHHHHHHhchheEE-EEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHH
Confidence 112223334444445555555544 59999999999999999999999999999999877 4443444567778888
Q ss_pred HHHHHHHHHHhhccCCCCCCH
Q psy17628 280 YCIIGTFFVYFVVPETKNKSL 300 (338)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~ 300 (338)
+++++.+...++--||+++..
T Consensus 507 ~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 507 LFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred HHHHHHHHheeeeeccCCCCC
Confidence 888888777665568888753
No 8
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.93 E-value=1.1e-23 Score=185.53 Aligned_cols=292 Identities=29% Similarity=0.449 Sum_probs=194.7
Q ss_pred eechhhhhhhc---ch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHH
Q psy17628 3 VSGILYTYVIG---SL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHG 73 (338)
Q Consensus 3 ~~G~~~~~~i~---~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~ 73 (338)
.+|.++++.++ .. ||+.|++. ++..+ ..++..+++||+|+++..+++.+++++..++....+.....
T Consensus 173 ~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~---~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (481)
T TIGR00879 173 TFGILVAYGFGSGKVSLNNTLGWRIPLGLQ---LIPAG-LLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKE 248 (481)
T ss_pred HHHHHHHHHHHHHhhcCCCCccHHHHHHHH---HHHHH-HHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHH
Confidence 45667777766 22 99999998 54444 45666778899999888777777766665555443322211
Q ss_pred HHHHH---HHHHH-HhhhhhhHHHHHHhCcc-chHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHH
Q psy17628 74 ELDEL---QKELD-IQAQKKKSLVEIYSNKA-TVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIV 148 (338)
Q Consensus 74 ~~~~~---~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (338)
..+.. +.... +.+..+..+.+.++..+ ..++.++...+..+...........+.|.+.++.|++..+.+......
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 328 (481)
T TIGR00879 249 LLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIV 328 (481)
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 11111 00000 00011112333433221 233444444444544444455677888988888898888888888889
Q ss_pred HHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhccccccccee
Q psy17628 149 GFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGV 228 (338)
Q Consensus 149 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (338)
.++.+++.++.|+++||+|||+.+..+..+.+++.+++.......... .........+....++..+.+.+..+..+.
T Consensus 329 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (481)
T TIGR00879 329 GAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTG--SSKSSGNVAIVFILLFIAFFAMGWGPVPWV 406 (481)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCC--cccchhHHHHHHHHHHHHHHHccccCeehh
Confidence 999999999999999999999999988777777766655322111110 000012233333444445555556666667
Q ss_pred eeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCCCCCCH
Q psy17628 229 MMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSL 300 (338)
Q Consensus 229 ~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (338)
++.|.+|++.|++++++.+...++++++++.+.+.+.+..+|+..|++.++++++++++.+++.||+++++.
T Consensus 407 ~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 407 IVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred hhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 789999999999999999999999999999999999998999999999888888888777777788776554
No 9
>TIGR00898 2A0119 cation transport protein.
Probab=99.93 E-value=2.5e-24 Score=190.55 Aligned_cols=273 Identities=18% Similarity=0.203 Sum_probs=173.5
Q ss_pred eechhhhhhhcch---hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchH-HHHHHH
Q psy17628 3 VSGILYTYVIGSL---YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIH-GELDEL 78 (338)
Q Consensus 3 ~~G~~~~~~i~~~---Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~-~~~~~~ 78 (338)
.+|.++++.++.. ||+.|++. +++.++ ..+..+++||||+|+..+++.+++++.+++..+.+.... .+....
T Consensus 226 ~~g~~~~~~~~~~~~~wr~~~~~~---~i~~~~-~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 301 (505)
T TIGR00898 226 SLGLVLLPLVAYFIPDWRWLQLAV---SLPTFL-FFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSL 301 (505)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH---HHHHHH-HHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhh
Confidence 4566666666655 99999999 666555 445557899999999999999999988887765433211 111111
Q ss_pred H-HHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHH
Q psy17628 79 Q-KELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTF 157 (338)
Q Consensus 79 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
+ ++...+++++.+++++++++..++..+......+.... .++. .+....+.+.+ ........++..+++.+
T Consensus 302 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~---~~~~~~~~~~~~i~~~~ 373 (505)
T TIGR00898 302 SLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF-SYYG----LVLDLGNLGGN---IYLDLFISGLVELPAKL 373 (505)
T ss_pred hhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH-HHHH----HhccccccCCC---hHHHHHHHHHHHHHHHH
Confidence 1 11111112234678888887655554443333322111 1111 22222233322 33445566788889999
Q ss_pred HHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCch
Q psy17628 158 FSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD 237 (338)
Q Consensus 158 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 237 (338)
+.++++||+|||+.+.++.++.+++.+++.... ....+.......+..++.+..+ +..+.+.+|.+|++
T Consensus 374 ~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~ 442 (505)
T TIGR00898 374 ITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP----------VDLYFLRTALAVLGKFGITSAF-QMVYLYTAELYPTV 442 (505)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC----------CCchHHHHHHHHHHHHHHHHHH-HHHHHHhcccccHH
Confidence 999999999999999998888777766554430 0111222333333333333333 33347889999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCCCCCCHH
Q psy17628 238 VKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQ 301 (338)
Q Consensus 238 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (338)
.|++++|+.+..+.+|+.++|.+.+ + +..++..++.+++++.+++.++. +++|||++++++
T Consensus 443 ~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~ 503 (505)
T TIGR00898 443 VRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLP 503 (505)
T ss_pred HHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCC
Confidence 9999999999999999999999888 3 44455567777777776666554 458999887654
No 10
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.89 E-value=3.9e-22 Score=175.28 Aligned_cols=245 Identities=15% Similarity=0.153 Sum_probs=146.9
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
||++|++. +++.++ .++.+..+||||+|...+++.++..+ + . ..+.++.+++++
T Consensus 191 WR~~f~i~---~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~~~-------~-------------~--~~~~~~~~~~~~ 244 (490)
T PRK10642 191 WRIPFFIA---LPLGII-GLYLRHALEETPAFQQHVDKLEQGDR-------E-------------G--LQDGPKVSFKEI 244 (490)
T ss_pred HHHHHHHH---HHHHHH-HHHHHHcCCCChhHHHHHHhhhhhcc-------c-------------c--ccccccCCHHHH
Confidence 99999998 554443 55667789999987543221111000 0 0 000112345566
Q ss_pred HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 174 (338)
+++ .++.........++ ....++....|.|.++++ .|++..+.........++..++.++.|+++||+|||+.+..
T Consensus 245 ~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 321 (490)
T PRK10642 245 ATK--HWRSLLTCIGLVIA-TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVIL 321 (490)
T ss_pred HHH--hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 653 22333333222222 223456677889998865 48877777777777788889999999999999999998887
Q ss_pred HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHH
Q psy17628 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE 254 (338)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 254 (338)
+.+...+..+.+.... . .......+....+.+++.+...+... .+.+|.+|++.|++++|+.+..+.+++
T Consensus 322 ~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~g~~~~~~~g~~~-~~~~~~~p~~~Rg~~~g~~~~~~~~~g 391 (490)
T PRK10642 322 GSVALFVLAIPAFILI--N-------SNVIGLIFAGLLMLAVILNCFTGVMA-STLPAMFPTHIRYSALAAAFNISVLVA 391 (490)
T ss_pred HHHHHHHHHHHHHHHH--h-------CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCccchHHHHHHHHHHHHHH
Confidence 7654443332211110 0 00112222233333333333333333 577899999999999998877788888
Q ss_pred HHHHHHHHHHHHhcc-cceeehhhhHHHHHHHHHHHhhccCCCCCCH
Q psy17628 255 FVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYFVVPETKNKSL 300 (338)
Q Consensus 255 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (338)
.++|.+.+.+.+..+ |+.++++..+.++++.+ ..+++||++++..
T Consensus 392 ~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~-~~~~~pes~~~~~ 437 (490)
T PRK10642 392 GLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI-TGVTMKETANRPL 437 (490)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HHHHhccccCCCC
Confidence 899999998877654 44455544444444444 3445799866533
No 11
>KOG0252|consensus
Probab=99.88 E-value=5.4e-23 Score=167.86 Aligned_cols=271 Identities=18% Similarity=0.164 Sum_probs=177.6
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcC-ChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhh---hH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKK-RRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKK---KS 91 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 91 (338)
||..|.+. .++.+..+..+..+|||+||-.... +.+.+. ++..++... +.++.++.....+.++ ..
T Consensus 224 WRl~~glg----~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~~~---~~~~~~~~~~~~~~~~~~~~~ 293 (538)
T KOG0252|consen 224 WRIIFGLG----AVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVLSV---DIEAESTAESDVPPPSNSFGL 293 (538)
T ss_pred HHHHHHHH----HHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hcccccccc---ccchhhccccCCCCcccccch
Confidence 99999999 6666657888889999999863322 222222 111111111 1111111001111111 12
Q ss_pred HHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcch---------hhHHHHHHHHHHHHHHHHh
Q psy17628 92 LVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNY---------GQNIVGFIQVIMTFFSSLL 162 (338)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~g~l 162 (338)
+...+..+ +-++++.....++. .-...+....+...+++..|+.+.+... -..+..++.++|..+...+
T Consensus 294 F~~~f~~~-hg~~Llgt~~~WFl-lDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~ 371 (538)
T KOG0252|consen 294 FSRLFLRW-HGKHLLGTAGTWFL-LDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYF 371 (538)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHh-hhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEE
Confidence 33333332 33444444444444 3344667778888888888876655443 1112233334466677788
Q ss_pred hhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhH
Q psy17628 163 VDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLA 242 (338)
Q Consensus 163 ~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 242 (338)
+|++|||++.+.+++++.+..+.++..+.... ......++..+..++...+.......+.+|.||++.|+++
T Consensus 372 id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~--------~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~ 443 (538)
T KOG0252|consen 372 IDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE--------NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTC 443 (538)
T ss_pred eehhhhHHHHHhhHHHHHHHHHHHcCCccccc--------ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhh
Confidence 99999999999999999988877776533111 2234455556666677788888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hcccceeehhhhHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q psy17628 243 LGVICILGSLIEFVVVKTFDDVER-----AFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDEL 307 (338)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (338)
.|+....+.+|+.++...+.++.+ ..+.+..+++++.+.++..++.++ +|||+++++++.+.+.
T Consensus 444 hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l-~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 444 HGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL-IPETKGKSLEEISNEE 512 (538)
T ss_pred hhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE-eecccccCHHHhcChh
Confidence 999999999999999999999888 667778888888888877755544 7899999998874433
No 12
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.86 E-value=3.6e-21 Score=156.28 Aligned_cols=245 Identities=16% Similarity=0.170 Sum_probs=157.0
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHh--hhhhhHHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQ--AQKKKSLV 93 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 93 (338)
||..|++. ++++++++++.++.++|+|+-. +-. .+++.+++..+.. +++++.+ ...+.-.+
T Consensus 184 w~~~f~~p---giiaiival~~~~~~rd~Pqs~---GLP-----~ie~~~~d~~e~~------~~~~~~~~ls~~~i~~~ 246 (448)
T COG2271 184 WRAAFYFP---GIIAIIVALILLFLLRDRPQSE---GLP-----PIEEYRGDPLEIY------EEEKENEGLTAWQIFVK 246 (448)
T ss_pred hhHHHHHH---HHHHHHHHHHHHHHhCCCcccc---CCC-----CHHHhhcCchhhh------hhhccCCCccHHHHHHH
Confidence 99999999 9999999999999999999521 110 0000111100000 0000000 01111233
Q ss_pred HHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc--CCch
Q psy17628 94 EIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA--GRRP 170 (338)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~ 170 (338)
-+++|| .++...+........-+.+..|.|.|+.+. |+|..++++..+.+-.+.++|++++|+++||+ |||.
T Consensus 247 YVL~Nk-----~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~ 321 (448)
T COG2271 247 YVLKNK-----LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG 321 (448)
T ss_pred HHHcCh-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc
Confidence 455665 344444444444444778999999999887 99999999999999999999999999999995 6776
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHH
Q psy17628 171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG 250 (338)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 250 (338)
...+...+....+++... ... +.+.+...+++...++... +...+......|..|.+.-|++.|+...++
T Consensus 322 p~~~i~~~~i~~~~~~~w---~~~------~~~~~l~~~~l~~iGf~Iy-GPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~ 391 (448)
T COG2271 322 PMALIFMLLITASLVLYW---LAP------NGSYLLDAILLFIIGFLIY-GPQMLIGLAAAEFVPKKAAGTATGFVGLFA 391 (448)
T ss_pred hHHHHHHHHHHHHHHHHH---cCC------CccHHHHHHHHHHHHHHHh-hHHHHHHHHHhccccHhhccchhchhhhHH
Confidence 654443333222222111 110 1122333333333333322 222333357799999999999999999999
Q ss_pred HH-HHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhc
Q psy17628 251 SL-IEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVV 292 (338)
Q Consensus 251 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (338)
.+ |...+....+.+.|.+||...|.++.+.++++.++.....
T Consensus 392 Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 392 YLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred HHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99 7888888889888989999999888777777766655544
No 13
>KOG0255|consensus
Probab=99.84 E-value=5.1e-19 Score=157.08 Aligned_cols=281 Identities=19% Similarity=0.194 Sum_probs=180.0
Q ss_pred echhhhhhhcch---hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCC---cchHHHHHH
Q psy17628 4 SGILYTYVIGSL---YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPN---YDIHGELDE 77 (338)
Q Consensus 4 ~G~~~~~~i~~~---Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~---~~~~~~~~~ 77 (338)
.|.+.....+.+ ||+.+++. .+.+++ .++.+++.||||||+..+++.+++.+.++++.+.| .......+.
T Consensus 218 ~~~~~~~~~a~~~~~Wr~~~~~~---~~~~~~-~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~ 293 (521)
T KOG0255|consen 218 GGLMLPAGAAYITRDWRWLFWII---SIPSGL-FLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRL 293 (521)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH---HHHHHH-HHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHH
Confidence 344444444444 99999999 555555 44557777899999999999999999999987643 222222211
Q ss_pred H---HHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHH
Q psy17628 78 L---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVI 154 (338)
Q Consensus 78 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 154 (338)
. ++......+++..+.++++.+..++..+...+.++.... ..+-.+......| .+........+.....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~-----~y~gl~~~~~~lg---~~~~~~~~~~~~~~~p 365 (521)
T KOG0255|consen 294 ELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSL-----VYYGLSLNVSGLG---GNIYLNFTLSGLVELP 365 (521)
T ss_pred HHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhH-----HHHhhhhhhhhcC---chHHHHHHHHHHHHhh
Confidence 1 111111122335678888887666666665555532211 1111112222222 2334455555667778
Q ss_pred HHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccC
Q psy17628 155 MTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF 234 (338)
Q Consensus 155 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 234 (338)
+....+...|++|||.....+..+..++++..++..... ..+...+...+..++.+.++... +.+.+|++
T Consensus 366 ~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~ 435 (521)
T KOG0255|consen 366 AYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDL---------GGWLHWILPLLGKFFIGSAFNLI-FLYSAELI 435 (521)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccc---------hhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhc
Confidence 888889999999999999999999999888877752211 10133344444444555555555 48999999
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q psy17628 235 TPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDEL 307 (338)
Q Consensus 235 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (338)
|+..|..+.+.......+++.++|.+...... ......+.+++.+..+.+.+...++|||+++.+.+..++.
T Consensus 436 pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~ 507 (521)
T KOG0255|consen 436 PTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDA 507 (521)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHH
Confidence 99999999999999999999888877643333 2322333334666677776776789999998876554443
No 14
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.83 E-value=9e-20 Score=158.09 Aligned_cols=165 Identities=13% Similarity=0.091 Sum_probs=107.6
Q ss_pred hHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc--CCchHH-HHHhHHHHHHHHHHHHHHHHhhc
Q psy17628 120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA--GRRPLL-LISDICMAICIGALGYYFYLLKL 195 (338)
Q Consensus 120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~-~~~~~~~~~~~~~~~~~~~~~~~ 195 (338)
......+.|.++.+ .|++..+.+...+...++..++.++.|+++||+ ++|+.. ........+....+... . .
T Consensus 259 ~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~--~-~- 334 (434)
T PRK11663 259 RAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM--P-F- 334 (434)
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc--c-c-
Confidence 44566788888854 599998989999999999999999999999998 333332 22211111111111111 0 0
Q ss_pred ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeh
Q psy17628 196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFG 275 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (338)
.............+++ ..+..........|.+|++.|++++|+.+..+.++..++|.+.+.+.+..||...+.
T Consensus 335 ------~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~ 407 (434)
T PRK11663 335 ------ASYVMQAACFFTIGFF-VFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFV 407 (434)
T ss_pred ------ccHHHHHHHHHHHHHH-HhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHH
Confidence 0111111112222211 111111222456899999999999999999999999999999999999999988888
Q ss_pred hhhHHHHHHHHHHHhhccCC
Q psy17628 276 TFAVYCIIGTFFVYFVVPET 295 (338)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~ 295 (338)
..+++.++.++..+...++.
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~ 427 (434)
T PRK11663 408 VISIAAGISALLLLPFLNAQ 427 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 88877777766555544443
No 15
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.81 E-value=2.1e-18 Score=152.54 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=106.3
Q ss_pred HHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628 122 VVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (338)
Q Consensus 122 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
....+.|.+++ +.|++..+.+...+...++.+++.++.|+++||+|||+.+..+..+..+..+..... .
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~------- 362 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI---G------- 362 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc---c-------
Confidence 35567888885 669999999999999999999999999999999999999887765555443322221 0
Q ss_pred hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHH
Q psy17628 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY 280 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (338)
....+.......+.+ +.+.+..+....++.|.+|++.|++++|+.+....+++.++|.+.+.+.+..|++..+...+.+
T Consensus 363 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 363 GANVWVLGLLLFFQQ-MLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS 441 (496)
T ss_pred ccHHHHHHHHHHHHH-HHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 001111111112111 1222223333367889999999999999999999999999999999999988887666554444
Q ss_pred HHH
Q psy17628 281 CII 283 (338)
Q Consensus 281 ~~~ 283 (338)
..+
T Consensus 442 ~~~ 444 (496)
T PRK03893 442 LTF 444 (496)
T ss_pred HHH
Confidence 333
No 16
>PRK09952 shikimate transporter; Provisional
Probab=99.81 E-value=1.5e-18 Score=150.51 Aligned_cols=166 Identities=12% Similarity=0.027 Sum_probs=102.8
Q ss_pred hHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
.+....|.|.+.++ .|++...........++..+++.++.|+++||+|||+.+..+.++..++.+.+.... ...
T Consensus 266 ~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~--- 340 (438)
T PRK09952 266 MYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMAL--EAQ--- 340 (438)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--HcC---
Confidence 45566677777654 477665444455566777788889999999999999998877665544433222211 000
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhcc--cceeeh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGS-LIEFVVVKTFDDVERAFG--TGVAFG 275 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~ 275 (338)
+.....+....+.+++.+..... .+++++|.+|++.|+++.++.+..+. +++.++|.+.+.+.+..+ |...+.
T Consensus 341 ---~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~ 416 (438)
T PRK09952 341 ---SIFWIVFFSIMLANIAHDMVVCV-QQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAI 416 (438)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 01112222222323333333333 34788999999999999999777655 788899999999888553 444555
Q ss_pred hhhHHHHHHHHHHHhhccCC
Q psy17628 276 TFAVYCIIGTFFVYFVVPET 295 (338)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~ 295 (338)
..+++.+++.+. .+.++|+
T Consensus 417 ~~~~~~~i~~v~-~~~~~~~ 435 (438)
T PRK09952 417 YLLAGCLISAMT-ALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHH-HHHcccc
Confidence 555555554443 3445654
No 17
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.81 E-value=1.2e-18 Score=150.29 Aligned_cols=138 Identities=10% Similarity=0.028 Sum_probs=102.5
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
.+....+.|.++++.|++..+.+.......++.+++.++.|+++||+|||+.+..+.....++.+.+...
T Consensus 236 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---------- 305 (406)
T PRK11551 236 LYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA---------- 305 (406)
T ss_pred HHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 4456678899998889999999999999999999999999999999999998887655555544433221
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT 270 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (338)
...+...+...+.+.+... ..+..+++..|.+|++.|++++|+.+....++..++|.+.+.+.+..+.
T Consensus 306 --~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~ 373 (406)
T PRK11551 306 --PSFAGMLLAGFAAGLFVVG-GQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRS 373 (406)
T ss_pred --CcHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCc
Confidence 0112222223333333322 2333447889999999999999999999999999999999998886554
No 18
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.81 E-value=1.7e-18 Score=149.59 Aligned_cols=169 Identities=11% Similarity=0.065 Sum_probs=124.7
Q ss_pred HHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628 122 VVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (338)
Q Consensus 122 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
....+.|.+.++ .|.+..+.++......++.+++.++.+++.||.++++.+..+..+.+++.+.+...
T Consensus 241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~----------- 309 (417)
T PRK10489 241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM----------- 309 (417)
T ss_pred hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-----------
Confidence 455677888888 68888888999999999999999999999999887777777766666655444322
Q ss_pred hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHH
Q psy17628 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY 280 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (338)
.+.+...+...+.+.+.+.. .+...+++.|..|++.||+++|+.+....++..+++.+.+.+.+..|.+..+...+.+
T Consensus 310 -~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~ 387 (417)
T PRK10489 310 -PMWILAVLCLALFGYLSAIS-SLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFG 387 (417)
T ss_pred -chHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHH
Confidence 11122233333344333322 2333367889999999999999999999999999999999999998987778777777
Q ss_pred HHHHHHHHHhhccCCCCCCHHHH
Q psy17628 281 CIIGTFFVYFVVPETKNKSLQQI 303 (338)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~ 303 (338)
..+..++.....+++++++.+|.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~ 410 (417)
T PRK10489 388 LLIIGVLLLLVLGELRRFRQTPP 410 (417)
T ss_pred HHHHHHHHHHhcccccccccccc
Confidence 77777677776788777655443
No 19
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.81 E-value=6.3e-19 Score=154.29 Aligned_cols=159 Identities=13% Similarity=-0.004 Sum_probs=108.2
Q ss_pred hHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
......|.|.++++ .|++..+.+.......++.+++.+++|+++||+|||+.+........++...+... .
T Consensus 274 ~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~---~----- 345 (467)
T PRK09556 274 RIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ---H----- 345 (467)
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH---h-----
Confidence 45577889988865 59999888889888999999999999999999999987765544333322211111 0
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHH-----------
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSL-IEFVVVKTFDDVER----------- 266 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------- 266 (338)
..+.....+...+.+.+.. +..........|.+|++.||++.|+.+..+++ ++.++|.+.|.+.+
T Consensus 346 --~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~ 422 (467)
T PRK09556 346 --ATSEYMYLASLFALGFLVF-GPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGY 422 (467)
T ss_pred --cCcHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccc
Confidence 0111222233333332221 11111124556999999999999999999997 66899999999999
Q ss_pred -hcccceeehhhhHHHHHHHHHHH
Q psy17628 267 -AFGTGVAFGTFAVYCIIGTFFVY 289 (338)
Q Consensus 267 -~~~~~~~~~~~~~~~~~~~~~~~ 289 (338)
..+|+..|.+..++.+++.+..+
T Consensus 423 ~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 423 TLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred cccChHHHHHHHHHHHHHHHHHHH
Confidence 56787778777666666654444
No 20
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.80 E-value=3.7e-18 Score=148.11 Aligned_cols=168 Identities=16% Similarity=0.134 Sum_probs=110.7
Q ss_pred HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCch
Q psy17628 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP 170 (338)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 170 (338)
++++.++++..+. ........+ ......+....+.|.++++.|++..+.+...+...++.+++.++.|+++||+|||+
T Consensus 220 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~ 297 (426)
T PRK12307 220 SMKGLFNRAQFPL-TLCVFIVLF-SIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK 297 (426)
T ss_pred HHHHHHhhchHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 4566777663332 222222222 12222334566788888888888888888888899999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhh-cccccccceeeeeccCCchhhhhHHHHHHHH
Q psy17628 171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVF-SVGFGPIPGVMMGELFTPDVKGLALGVICIL 249 (338)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 249 (338)
.+..+.++..+..+..... . ..... .+...+++.+. ..+..+....++.|.+|++.|++++|+.+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~---~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 365 (426)
T PRK12307 298 TFSIGLLMSFLFIFPLFRI---P--------QDNYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNL 365 (426)
T ss_pred HHHHHHHHHHHHHHHHHHH---c--------cccHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHH
Confidence 9888776655544333221 0 01111 11122222211 1222233336778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccce
Q psy17628 250 GSLIEFVVVKTFDDVERAFGTGV 272 (338)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~ 272 (338)
+.+++.++|.+.+.+.+..|...
T Consensus 366 ~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 366 AATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred HhHHHHHHHHHHHHHHHcccHHH
Confidence 99999999999999988877543
No 21
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.80 E-value=5.9e-18 Score=139.31 Aligned_cols=231 Identities=18% Similarity=0.216 Sum_probs=159.7
Q ss_pred eechhhhhhhcch--hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHH
Q psy17628 3 VSGILYTYVIGSL--YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQK 80 (338)
Q Consensus 3 ~~G~~~~~~i~~~--Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 80 (338)
.+|..++..++.+ ||+.|+.. +.++++..+..+..+| |+-. ++
T Consensus 151 v~GvPLGt~ig~~~GWR~~F~~i---a~l~ll~~~~~~~~lP--~~~~--~~---------------------------- 195 (394)
T COG2814 151 VLGVPLGTFLGQLFGWRATFLAI---AVLALLALLLLWKLLP--PSEI--SG---------------------------- 195 (394)
T ss_pred HHhccHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHhCC--CccC--CC----------------------------
Confidence 3566777777777 99999999 9999998888899999 2100 00
Q ss_pred HHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHH
Q psy17628 81 ELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFS 159 (338)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 159 (338)
+.+.+..+..+.+++|+.+... ......+.+.+...+|...++++. |++....++....++++.++|+.++
T Consensus 196 ---~~~~~~~~~~~~l~~p~v~~~l-----~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~g 267 (394)
T COG2814 196 ---SLPGPLRTLLRLLRRPGVLLGL-----LATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLG 267 (394)
T ss_pred ---CCCcchhHHHHHhcCchHHHHH-----HHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 0001112345667777433332 223333445667777777777766 9999999999999999999999999
Q ss_pred HHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhh
Q psy17628 160 SLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK 239 (338)
Q Consensus 160 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 239 (338)
|+++|| +.|+.+.....+.++..+.+.+. ..+.+.......+.++.......... ...++ .-++.+
T Consensus 268 Grl~dr-~~~~~l~~~~~l~a~~~l~l~~~-----------~~~~~~~~~~~~~wg~a~~~~~~~~~-~~~a~-~~p~~~ 333 (394)
T COG2814 268 GRLADR-GPRRALIAALLLLALALLALTFT-----------GASPALALALLFLWGFAFSPALQGLQ-TRLAR-LAPDAA 333 (394)
T ss_pred hhhccc-cchhHHHHHHHHHHHHHHHHHHh-----------cchHHHHHHHHHHHHHHhhhhhhHHH-HHhcc-cCCCch
Confidence 999999 88888888877777777665554 11222333333332222222222222 34455 335778
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHh
Q psy17628 240 GLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYF 290 (338)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (338)
..+.+++....++|..++..+.+...++.|+....++.+.+.+++.++...
T Consensus 334 ~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 334 DLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888888777777777665554
No 22
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.79 E-value=4e-18 Score=148.63 Aligned_cols=161 Identities=15% Similarity=0.097 Sum_probs=104.2
Q ss_pred hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc--CCchHHHH-HhHHHHHHHHHHHHHHHHhhc
Q psy17628 120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA--GRRPLLLI-SDICMAICIGALGYYFYLLKL 195 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~-~~~~~~~~~~~~~~~~~~~~~ 195 (338)
.+....|.|.++++. |++..+.+....+..++.+++.++.|+++||+ +||....+ ...+..++.+.+... ..
T Consensus 269 ~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~---~~- 344 (452)
T PRK11273 269 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN---PA- 344 (452)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh---cc-
Confidence 445677899999874 88888888888888899999999999999999 45543222 222222222111110 00
Q ss_pred ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHhcccceee
Q psy17628 196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFV-VVKTFDDVERAFGTGVAF 274 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 274 (338)
.......+.....+.... +.......+..|.+|++.||+++|+.+..+.+++.+ +|.+.+.+.+..|++..|
T Consensus 345 ------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f 417 (452)
T PRK11273 345 ------GNPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF 417 (452)
T ss_pred ------cChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHH
Confidence 011112222222222211 111112245679999999999999999998888765 688999999999998888
Q ss_pred hhhhHHHHHHHHHHHhh
Q psy17628 275 GTFAVYCIIGTFFVYFV 291 (338)
Q Consensus 275 ~~~~~~~~~~~~~~~~~ 291 (338)
.+.+++++++++....+
T Consensus 418 ~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 418 MVMIGGSILAVILLIVV 434 (452)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 87777777766555543
No 23
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.79 E-value=4.9e-18 Score=143.28 Aligned_cols=227 Identities=14% Similarity=0.159 Sum_probs=134.2
Q ss_pred echhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHH
Q psy17628 4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE 77 (338)
Q Consensus 4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 77 (338)
+|.++++.++.. ||+.|++. ++++++..++.++++||+|++.. +. .+. +
T Consensus 125 lG~~l~~~~~~~l~~~~gWr~~f~~~---~~l~~~~~~~~~~~lp~~p~~~~---~~--------------~~~----~- 179 (368)
T TIGR00903 125 LGIIFALAAGLKIYTAGGLQLLIIPI---AAVAAAGIILVLAALPALPFQAA---EG--------------FGF----K- 179 (368)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHH---HHHHHHHHHHHHHHcCCCCCCCC---CC--------------cch----H-
Confidence 455555555444 99999998 78888877788888999986421 00 000 0
Q ss_pred HHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHH
Q psy17628 78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTF 157 (338)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
+ ...+++++++++..+ ...+..+.....++.+..|.|.++++.|++.. .+....+..+ .+.+
T Consensus 180 --~-------~~~~~~~ll~~~~~~-----~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~---~g~~ 241 (368)
T TIGR00903 180 --D-------AVKEFGALAGRKDLW-----IIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAIL---AGLI 241 (368)
T ss_pred --H-------HHHHHHHHHcChhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHH---HHHH
Confidence 0 011356778776432 22222333333466778899999988887654 4444444444 4444
Q ss_pred HHHHhhhhcCCc---hHHHH-HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeecc
Q psy17628 158 FSSLLVDKAGRR---PLLLI-SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL 233 (338)
Q Consensus 158 ~~g~l~d~~grr---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 233 (338)
..++++||..|| +.... .....++........ ......+....+.+++..... +..+++.+|.
T Consensus 242 g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~ 308 (368)
T TIGR00903 242 GVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE------------LNRLALFAFIGIAGLLMLPAY-AIIMDWIGKF 308 (368)
T ss_pred HHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc------------cccHHHHHHHHHHHHhhhhhH-HHHHHHHHHh
Confidence 457888887654 33222 222222222222111 011222223333333333222 3344788999
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHH
Q psy17628 234 FTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFV 288 (338)
Q Consensus 234 ~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (338)
+|++.|++++|+.+..+++++..+|.+.+.+.. +....|.++++..+++++..
T Consensus 309 ~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 309 CDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred cchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887763 54456777776666666554
No 24
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.78 E-value=3.9e-18 Score=146.50 Aligned_cols=260 Identities=17% Similarity=0.147 Sum_probs=149.5
Q ss_pred eechhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHH
Q psy17628 3 VSGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELD 76 (338)
Q Consensus 3 ~~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 76 (338)
.+|.++++.++.. ||+.|++. +++.++..++.+++.||+|+.... .+.++.....++...+
T Consensus 128 ~~g~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------- 194 (399)
T TIGR00893 128 GLGGIIGGPLVGWILIHFSWQWAFIIE---GVLGIIWGVLWLKFIPDPPQKAKW-LTEEEKYIVVGGLLAE--------- 194 (399)
T ss_pred hHHHHHHHHHHHHHHHhCCchHHHHHH---HHHHHHHHHHhhheecCCCCcccc-CCHHHHhhcchhhccc---------
Confidence 4556666655543 99999999 777777666667777887641100 0111100000000000
Q ss_pred HHHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHH
Q psy17628 77 ELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIM 155 (338)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 155 (338)
.+..++++..+.+.++.++++..+ ...+..+...........+.|.++++ .|.+..+.+.......++.+++
T Consensus 195 --~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (399)
T TIGR00893 195 --QQGKGPSTPKKYQIKELLKDRRVW-----GLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIG 267 (399)
T ss_pred --cccccccCCCccchHHHhcCHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHH
Confidence 000011112233456666665322 22222222233355667778887765 4888888899999999999999
Q ss_pred HHHHHHhhhhcCCchHHHH-HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccC
Q psy17628 156 TFFSSLLVDKAGRRPLLLI-SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF 234 (338)
Q Consensus 156 ~~~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 234 (338)
.++.|+++||++||+.... ......++.+........... .............+.+ +.+..+..++++.|.+
T Consensus 268 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 340 (399)
T TIGR00893 268 MILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY------VNIPYAALALVALGFF-GLGAGAIGWALISDNA 340 (399)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc------chhHHHHHHHHHHHHh-chhhhhHHHHHHHhhc
Confidence 9999999999999962111 111111111111111111000 0111122222222222 2224555568899999
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cceeehhhhHHHHHHHHHHH
Q psy17628 235 TPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVY 289 (338)
Q Consensus 235 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 289 (338)
|++.|++++|+.+....++..++|.+.+.+.+..| +...+.+.+++.+++.+..+
T Consensus 341 ~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 341 PGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888 77777766666666554443
No 25
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.78 E-value=5.3e-18 Score=144.71 Aligned_cols=151 Identities=14% Similarity=0.078 Sum_probs=110.6
Q ss_pred HHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhh
Q psy17628 123 VIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG 202 (338)
Q Consensus 123 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (338)
...+.+.+.++.|.+..+.+.......++.+++.++.|+++||+|||+.+..+..+..++.+.+.... ..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----------~~ 293 (377)
T TIGR00890 224 LIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP----------ML 293 (377)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc----------cc
Confidence 34455666677787777788888899999999999999999999999998888777777665544320 00
Q ss_pred hchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHH
Q psy17628 203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCI 282 (338)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (338)
..........+.+.+.+....... .++.|.+|+++|+++.|+.+....++..++|.+.+.+.+..||+..+.+.+++.+
T Consensus 294 ~~~~~~~~~~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~ 372 (377)
T TIGR00890 294 NDVLFLATVALVFFTWGGTISLFP-SLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFAL 372 (377)
T ss_pred hhHHHHHHHHHHHHHhccchhccH-HHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 111222223333334433333333 6788999999999999999999999999999999999999998877777666555
Q ss_pred HH
Q psy17628 283 IG 284 (338)
Q Consensus 283 ~~ 284 (338)
++
T Consensus 373 ~~ 374 (377)
T TIGR00890 373 TS 374 (377)
T ss_pred Hh
Confidence 44
No 26
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.77 E-value=3e-18 Score=148.85 Aligned_cols=251 Identities=14% Similarity=0.089 Sum_probs=143.0
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhH-HHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKS-LVE 94 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 94 (338)
||+.|++. +++.++..++.++++||+|+....+ +.++. +++..+...+ +.+.+.+.+.. .+.
T Consensus 184 w~~~f~~~---~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~------~~~~~~~~~~~~~~~ 246 (438)
T TIGR00712 184 WHAALYFP---AICAIIVALFAFAMMRDTPQSCGLP-PIEEY-------RNDYPDDYNE------KAEQELTAKEIFMQY 246 (438)
T ss_pred hHHHHHHH---HHHHHHHHHHHHHhccCCHHhcCCC-Cchhc-------cccccccccc------ccccccchHHHHHHH
Confidence 99999999 7777776677777889988632110 00000 0000000000 00000001111 123
Q ss_pred HHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHH
Q psy17628 95 IYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLL 173 (338)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 173 (338)
.++++..+...+ ..+......+....|.|.++++. |++..+.++...+..+..+++.+++|+++||+++++...
T Consensus 247 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~ 321 (438)
T TIGR00712 247 VLPNKLLWYIAI-----ANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGA 321 (438)
T ss_pred HccCchHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccH
Confidence 455553222211 11112222456677889998875 889888899999999999999999999999996543222
Q ss_pred HHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHH
Q psy17628 174 ISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLI 253 (338)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~ 253 (338)
.+.....+..+..... ..... .+.+.........+.+.. +..........|.+|++.|++++|+.+..+.++
T Consensus 322 ~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 393 (438)
T TIGR00712 322 TGVFFMTLVTIAVIVY-WMNPA------GNPLVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG 393 (438)
T ss_pred HHHHHHHHHHHHHHHH-HhcCC------CchHHHHHHHHHHHHHHc-cHHHHHHHHHHHhcChhheeeehhhhchHHHhh
Confidence 3322222211111111 11000 011111122222222211 111111135678999999999999999888887
Q ss_pred H-HHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628 254 E-FVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 254 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
+ .++|.+.+.+.+..|+...+.+..++.+++.+..++++||.|
T Consensus 394 g~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 394 GSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5 578999999999999888888877777777777777777754
No 27
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.77 E-value=2.4e-17 Score=142.11 Aligned_cols=139 Identities=16% Similarity=0.043 Sum_probs=98.9
Q ss_pred HHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628 122 VVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (338)
Q Consensus 122 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
....+.|.++.+ .|++..+.+.......++.+++.++.|+++||+|||+.+..+.....+........ .
T Consensus 256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~------ 325 (405)
T TIGR00891 256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI----G------ 325 (405)
T ss_pred hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh----C------
Confidence 444566766654 58888889999999999999999999999999999998887765543322221111 0
Q ss_pred hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cce
Q psy17628 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGV 272 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 272 (338)
...+...+...+.+.+........ ..++.|.+|++.|++++|+.+....++..++|.+.+.+.+..| +..
T Consensus 326 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~ 396 (405)
T TIGR00891 326 -ANVAVLGLGLFFQQMLVQGIWGIL-PKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGT 396 (405)
T ss_pred -CchHHHHHHHHHHHHHHccchhhH-HHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 111222222233333333333333 3688999999999999999999999999999999999999888 543
No 28
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.77 E-value=1.4e-17 Score=143.41 Aligned_cols=235 Identities=14% Similarity=0.095 Sum_probs=134.4
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchh---HHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPV---YLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSL 92 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~---~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
||+.|++. +++.++..++.++++||+|+ |+.+ ++.+...++...++.+.++..+.. .+.....+..+
T Consensus 167 wr~~f~~~---~~~~l~~~~~~~~~~~~~p~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 236 (412)
T TIGR02332 167 WQWLFLLE---GFPSVILGVMTWFWLDDSPDKAKWLDE----EDKKALKEMIDNDQLTLEQPEGAF---AHAAMPQRSML 236 (412)
T ss_pred hhHHHHHH---HHHHHHHHHHHhhccCCCcccCCCCCH----HHHHHHHHHHHhcccccccccccc---ccccccHHHHH
Confidence 99999999 78877777777888999984 2221 111111111111110000000000 00000111223
Q ss_pred HHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc--cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCch
Q psy17628 93 VEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT--NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP 170 (338)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 170 (338)
++++ ++. ++...+..+.....++.+..|.|.++++. |++..+.+.......++.+++.++.|+++||++||+
T Consensus 237 ~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~ 310 (412)
T TIGR02332 237 REIF-TPA-----IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK 310 (412)
T ss_pred HHhc-ChH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH
Confidence 3333 221 22223333333344667888999999885 567777888899999999999999999999999877
Q ss_pred HHH-HHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHH
Q psy17628 171 LLL-ISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL 249 (338)
Q Consensus 171 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 249 (338)
... .......++. .+... . . .....+....+...+.... .+..+....|.+|++.|++++|+.+..
T Consensus 311 ~~~~~~~~~~~~~~-~~~~~----~------~-~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~a~g~~~~~ 377 (412)
T TIGR02332 311 HHTALPYLFAAAGW-LLASA----T------D-HNLIQLLGIIMASMGSFSA-MAIFWTTPDQSISLQARAIAIAVINAT 377 (412)
T ss_pred HHHHHHHHHHHHHH-HHHHh----c------C-CHHHHHHHHHHHHHHhhhh-hhHHHhhcccccchHHHHHHHHHHHHh
Confidence 533 3332332222 11111 0 0 1111111122222222111 222334557889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcc-cceeehhhhH
Q psy17628 250 GSLIEFVVVKTFDDVERAFG-TGVAFGTFAV 279 (338)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 279 (338)
++++++++|.+.+.+.+..| |...+++.++
T Consensus 378 ~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~ 408 (412)
T TIGR02332 378 GNIGSALSPFLIGILKDATGSFNSGLWFVAA 408 (412)
T ss_pred hhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence 99999999999999988875 6655554443
No 29
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.77 E-value=3.7e-17 Score=141.84 Aligned_cols=218 Identities=15% Similarity=0.140 Sum_probs=123.3
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
||++|++. +++.++ .+..+..+||+|++.. ++ .+++.+++++
T Consensus 197 Wr~~F~i~---~~~~ll-~~~~~~~~~e~~~~~~--------~~--------------------------~~~~~~~~~l 238 (432)
T PRK10406 197 WRIPFALG---AVLAVV-ALWLRRQLDETSQQET--------RA--------------------------LKEAGSLKGL 238 (432)
T ss_pred hHHHHHHH---HHHHHH-HHHHHhcCCCCchHHH--------hh--------------------------hcccccHHHH
Confidence 99999998 565554 5556667888875310 00 0011245666
Q ss_pred HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 174 (338)
+++++. ... .....+.....++....|.|.++++ .|++..+.+....+..++..++.++.|+++||+|||+.+..
T Consensus 239 ~~~~~~---~~~-~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~ 314 (432)
T PRK10406 239 WRNRRA---FIM-VLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLC 314 (432)
T ss_pred HhhHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 665421 111 1111221122355677788888765 58887777777888788888889999999999999998776
Q ss_pred HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHH-
Q psy17628 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLI- 253 (338)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~- 253 (338)
+..+.++....+... .... ......+....+.....+... ...+.+.+|.+|++.|++++|+.+..+++.
T Consensus 315 ~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~ 385 (432)
T PRK10406 315 FGSLAALFTVPILSA--LQNV------SSPYAAFGLVMCALLIVSFYT-SISGILKAEMFPAQVRALGVGLSYAVANALF 385 (432)
T ss_pred HHHHHHHHHHHHHHH--HHcC------CcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCccchhhhHHHHHHHHHH
Confidence 655433332211111 0000 011111111111111222112 223367899999999999999999887753
Q ss_pred HHHHHHHHHHHHHhccccee-ehhhhHHHHHHH
Q psy17628 254 EFVVVKTFDDVERAFGTGVA-FGTFAVYCIIGT 285 (338)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 285 (338)
+...|.+.+ +.+..|++.. ++..+++.++..
T Consensus 386 g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~ 417 (432)
T PRK10406 386 GGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAF 417 (432)
T ss_pred HhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHH
Confidence 445666666 4465664443 333333444443
No 30
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.76 E-value=5e-17 Score=139.94 Aligned_cols=192 Identities=12% Similarity=0.080 Sum_probs=128.8
Q ss_pred HHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCC--------CCcchhhHHHHHHHHHHHHHHHHhh
Q psy17628 92 LVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKI--------ISPNYGQNIVGFIQVIMTFFSSLLV 163 (338)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~ 163 (338)
.++.+|++..+...+..++.... ......+.+.+.++.|.++ ...+...++..+..+++.++.|+++
T Consensus 201 ~~~~~k~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~ 275 (418)
T TIGR00889 201 AFILFKNKRMAIFFFFSMLLGAP-----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFL 275 (418)
T ss_pred HHHHhcCCCeeeHHHHHHHHHhH-----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777544333322222121 2234456677777766543 4557888888889999999999999
Q ss_pred hhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHH
Q psy17628 164 DKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLAL 243 (338)
Q Consensus 164 d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 243 (338)
||+|||+++..+.++.+++..++... . .. ....+..++...+.+.+.+....... .++.|.+|++.|++++
T Consensus 276 dr~g~r~~l~~~~~~~~v~~~l~~~~---~-~~----~~~~~~l~l~~~l~g~~~~~~~~~~~-~~i~~~~p~~~~g~~~ 346 (418)
T TIGR00889 276 KRFGIKKVMLLSLVAWALRFGFFAYG---D-PE----YFGYALLFLSMIVYGCAFDFFNISGS-VFVEKEVPVHIRASAQ 346 (418)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHc---C-cc----hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCHHHHHHHH
Confidence 99999999999988777765544431 0 00 00112223334444444443333333 6789999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhc------ccceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628 244 GVIC-ILGSLIEFVVVKTFDDVERAF------GTGVAFGTFAVYCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 244 ~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
|+.+ ....++..++|.+.|.+.+.. ||+..|.+.+++.+++.++.+++++|+++
T Consensus 347 g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 347 GLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 9997 567889999999999998874 47777888888888888788888887644
No 31
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.76 E-value=2e-18 Score=140.45 Aligned_cols=184 Identities=10% Similarity=0.020 Sum_probs=157.8
Q ss_pred chHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHH
Q psy17628 101 TVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA 180 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 180 (338)
++.++++...+........-..+..-.|.+.++.|+|..|.+.+.+...+...++.++.|.++||.+.|..+..++++.+
T Consensus 26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsa 105 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSA 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHH
Confidence 45556666666665544444567778899999989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q psy17628 181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKT 260 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 260 (338)
+..+++++. .....+.++..+-+.+.+.++.+.. ..+...+|+++||+..++-+...++|+.+.+.+
T Consensus 106 i~nil~Gfs------------~s~~~~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~ 172 (448)
T COG2271 106 IVNILFGFS------------PSLFLFAVLWVLNGWFQGMGWPPCA-RTITHWFSRKERGTWWSIWNTSHNIGGALAPLV 172 (448)
T ss_pred HHHHHHhhh------------hHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHcCccccCceEEEehhhhhcccchHHHH
Confidence 999999886 2345556667777788888888887 789999999999999999999999999999999
Q ss_pred H--HHHHHhcccceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628 261 F--DDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 261 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
. +.+..+.+|+..|++-++++++.+++.++.++++++
T Consensus 173 ~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 173 ALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9 888888899999999999999999888888877643
No 32
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.76 E-value=2.4e-17 Score=142.64 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=104.9
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHH
Q psy17628 135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIY 214 (338)
Q Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (338)
+.+..+.+...++..++..++.++.|+++||+|||+.+..+..+.++..++..+. .+.+..+....+.
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~------------~~~~~~~~~~~l~ 325 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA------------TGPLEVSILKLLH 325 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc------------ccHHHHHHHHHHH
Confidence 4455566777888888889999999999999999999888877777766555432 1122333333333
Q ss_pred HHhhcccccccceeeeeccCCchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhcc
Q psy17628 215 IIVFSVGFGPIPGVMMGELFTPDVKGLALGV-ICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP 293 (338)
Q Consensus 215 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (338)
+...+...... ..++.|.+|++.|++..+. .+....++..+++.+.+.+.+..||+..|...+++.++..++.++..+
T Consensus 326 g~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 326 AFEVPFLLVGV-FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHHHH-HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333222222 2577888999999988765 567788999999999999999999988888888777766655555444
Q ss_pred C
Q psy17628 294 E 294 (338)
Q Consensus 294 ~ 294 (338)
+
T Consensus 405 ~ 405 (420)
T PRK09528 405 G 405 (420)
T ss_pred C
Confidence 3
No 33
>PRK15075 citrate-proton symporter; Provisional
Probab=99.76 E-value=3.7e-17 Score=141.91 Aligned_cols=144 Identities=12% Similarity=0.053 Sum_probs=95.9
Q ss_pred chHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy17628 119 GINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDE 197 (338)
Q Consensus 119 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (338)
.++....|.|.++++ .|++..+.++...+..++.+++.++.|+++||+|||+.+..+..+..+........ .... .
T Consensus 253 ~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~-~- 329 (434)
T PRK15075 253 SFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSW-LVAA-P- 329 (434)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-HHcC-C-
Confidence 356678889999887 59888888888888889999999999999999999998877654433222111110 0000 0
Q ss_pred chhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhcccc
Q psy17628 198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSL-IEFVVVKTFDDVERAFGTG 271 (338)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 271 (338)
..........+.+.+.+.. .+..+.+..|.+|++.|+++.++.+..+.. ++.++|.+.+.+.+..|++
T Consensus 330 -----~~~~~~~~~~~~~~~~g~~-~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 330 -----SFARMLAVELWLSFLYGSY-NGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred -----chHHHHHHHHHHHHHHHHH-HhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 1111111122222233222 222235789999999999999997666655 5788999999999988864
No 34
>TIGR00895 2A0115 benzoate transport.
Probab=99.75 E-value=2.3e-17 Score=141.83 Aligned_cols=240 Identities=17% Similarity=0.208 Sum_probs=141.0
Q ss_pred echhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHH
Q psy17628 4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE 77 (338)
Q Consensus 4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 77 (338)
+|..+++.++.. ||+.|++. +++..+..++.+.++||+|++..++ +.++..+..++........+.+ +
T Consensus 152 ~g~~~~~~~~~~l~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~ 225 (398)
T TIGR00895 152 IGAAVGGFLAGWLIPVFGWRSLFYVG---GIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--A 225 (398)
T ss_pred HHHHHHHHHHHHHhhcccceeehhhh---hhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--c
Confidence 444555554433 99999998 7777776777778899998876554 3333333333322111110000 0
Q ss_pred HHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHH
Q psy17628 78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTF 157 (338)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
..+...+++..+...+..++++ ..+......... ............+.|.+.++.|.+..+.+.......++.+++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (398)
T TIGR00895 226 LPEQKATQGTKRSVFKALFQGK-TARITVLLWLLY-FMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSI 303 (398)
T ss_pred ccccccccchhhHHHHHHhcch-hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0000000011111222233332 222222222222 22233355667788888888898988889999999999999999
Q ss_pred HHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCch
Q psy17628 158 FSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD 237 (338)
Q Consensus 158 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 237 (338)
+.|+++||+|||+.... ..+..+...++... . .+.........+.+.+.+...... .+++.|.+|++
T Consensus 304 ~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~ 370 (398)
T TIGR00895 304 IFGWLADRLGPRVTALL-LLLGAVFAVLVGST--L---------FSPTLLLLLGAIAGFFVNGGQSGL-YALMALFYPTA 370 (398)
T ss_pred HHHHHHhhcchHHHHHH-HHHHHHHHHHHHHH--h---------hCHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCHH
Confidence 99999999999944433 33333332222221 0 012233334444555544444333 47899999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 238 VKGLALGVICILGSLIEFVVVKTFDDV 264 (338)
Q Consensus 238 ~r~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (338)
.|++++|+.+....++..++|.+.|.+
T Consensus 371 ~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 371 IRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 999999999999999999999888764
No 35
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.75 E-value=4.3e-17 Score=139.13 Aligned_cols=228 Identities=11% Similarity=0.053 Sum_probs=139.7
Q ss_pred echhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHH
Q psy17628 4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE 77 (338)
Q Consensus 4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 77 (338)
+|..+++.++.. ||+.|++. +.+.++..++.++++||+|++...+ + .
T Consensus 136 ~g~~ig~~~~~~l~~~~~~~~~f~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~----------~---------- 188 (375)
T TIGR00899 136 LAWVIGPPLAFWLALGFGFTVMFLTA---ALAFVLCGVLVWLFLPSYPRGAPGA----L----------T---------- 188 (375)
T ss_pred HHHHHhhhHHHHHHHhcccHHHHHHH---HHHHHHHHHHHHHhCCCcccCcccc----c----------C----------
Confidence 455555555443 99999999 7776666666677789977421000 0 0
Q ss_pred HHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHH
Q psy17628 78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMT 156 (338)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~ 156 (338)
+.+.++.++++..+. ......+... .......+.|.+++ +.|.+..+.+...........++.
T Consensus 189 -----------~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 252 (375)
T TIGR00899 189 -----------RLEVRGLLASRDTRL-LFVACTLMWG----CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFM 252 (375)
T ss_pred -----------cchhhhhhcCcchHH-HHHHHHHHHH----HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 001122344442222 2221111111 12233445566654 458888888877777777778888
Q ss_pred HHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCc
Q psy17628 157 FFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP 236 (338)
Q Consensus 157 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 236 (338)
++.|++.||+|||+.+..+.....+........ .+.+.......+.+.+.+... +....+..|..|+
T Consensus 253 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~~ 319 (375)
T TIGR00899 253 LLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD------------NSLWALLMLQLLNAIFIGILA-GIGMLYFQDLMPG 319 (375)
T ss_pred HhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcc
Confidence 999999999999998877665544433322221 112222333333333333332 2333577888886
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHH
Q psy17628 237 DVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFV 288 (338)
Q Consensus 237 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (338)
+ +++++++.+...+++..++|.+.+.+.+..|++..+.+.+++.+++.++.
T Consensus 320 ~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 320 R-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 4 67999999999999999999999999998898888877777666665443
No 36
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.75 E-value=3.4e-17 Score=140.32 Aligned_cols=159 Identities=9% Similarity=0.041 Sum_probs=105.1
Q ss_pred HHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 121 NVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 121 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
.....+.|.++++ .|++..+.+.......++.+++.++.|+++||+|||+.+..+.....+........
T Consensus 233 ~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---------- 302 (393)
T PRK15011 233 SLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA---------- 302 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH----------
Confidence 3445567777754 58888888888777778888899999999999999998776654444332222111
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV 279 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (338)
...+..+....+.+...+....... .+..|.+|+ .|++++++.+...++|..+++.+.+.+.+..||+..+.+.++
T Consensus 303 --~~~~~~l~~~~l~~~~~g~~~~~~~-~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~ 378 (393)
T PRK15011 303 --HSPAILLGLQLLNAIYIGILGGIGM-LYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALV 378 (393)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 0112222222222222222222222 456888886 499999999888999999999999999998898877776666
Q ss_pred HHHHHHHHHHhhccC
Q psy17628 280 YCIIGTFFVYFVVPE 294 (338)
Q Consensus 280 ~~~~~~~~~~~~~~~ 294 (338)
+.+++.++. +..||
T Consensus 379 ~~~~~~~~~-~~~~~ 392 (393)
T PRK15011 379 MIIATLFCL-LRIKD 392 (393)
T ss_pred HHHHHHHHH-HhhcC
Confidence 665555443 34554
No 37
>PRK03545 putative arabinose transporter; Provisional
Probab=99.75 E-value=1.4e-16 Score=136.60 Aligned_cols=218 Identities=13% Similarity=0.047 Sum_probs=136.8
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
||+.|++. +++.++..++.+..+||.|+ + +. + ...+.++.
T Consensus 162 w~~~f~~~---~~~~~l~~~~~~~~~~~~~~----~-~~-~-------------------------------~~~~~~~~ 201 (390)
T PRK03545 162 WRTTFLAI---GGGALITLLLLIKLLPLLPS----E-HS-G-------------------------------SLKSLPLL 201 (390)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHhCCCCCC----C-Cc-c-------------------------------hHHHHHHH
Confidence 99999999 77777655566666777542 0 00 0 00123456
Q ss_pred HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 174 (338)
++++..+......... .. .......+.+.+.++ .|.+..+.+.......++.+++.++.|+++||++||... .
T Consensus 202 ~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~ 275 (390)
T PRK03545 202 FRRPALVSLYLLTVVV-VT----AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-I 275 (390)
T ss_pred HhCcHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-H
Confidence 6666333222221111 11 122334556666665 588888889999999999999999999999999988654 4
Q ss_pred HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHH
Q psy17628 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE 254 (338)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 254 (338)
+..+..++....... ..+.+..+....+.+.+... ..+.....+.|..| +.|++++|+.+....+|.
T Consensus 276 ~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~ 342 (390)
T PRK03545 276 AIALLLVCLLLLLPA-----------ANSEWHLSVLSIFWGIAIMC-IGLAMQVKVLKLAP-DATDVAMALFSGIFNIGI 342 (390)
T ss_pred HHHHHHHHHHHHHHH-----------hchHHHHHHHHHHHHHHHhc-chHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHH
Confidence 433333333222111 01122233333334433322 22222245667766 578999999999999999
Q ss_pred HHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhc
Q psy17628 255 FVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVV 292 (338)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (338)
.+++.+.|.+.+..|++..+...+++.+++.++.+...
T Consensus 343 ~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 343 GAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999888888877777776665544
No 38
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.74 E-value=1.4e-17 Score=144.97 Aligned_cols=154 Identities=11% Similarity=0.011 Sum_probs=105.7
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc--CCchHHHHHh--HHHHHHHHHHHHHHHHhhc
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA--GRRPLLLISD--ICMAICIGALGYYFYLLKL 195 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~--~~~~~~~~~~~~~~~~~~~ 195 (338)
......+.|.+.++.|++..+.+...++.+++.+++.++.|+++||. ++|+....+. +..+++.++....
T Consensus 257 ~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~------ 330 (455)
T TIGR00892 257 FFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA------ 330 (455)
T ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 34556677888888899999999999999999999999999999974 3343333322 2222222222111
Q ss_pred ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cceee
Q psy17628 196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAF 274 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 274 (338)
.+.+..++...+.+.+.+..... ..+++.|.+|++.+++++|+.+....++..++|.+.+.+.+..+ |+..+
T Consensus 331 ------~~~~~~~i~~~~~G~~~g~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f 403 (455)
T TIGR00892 331 ------GDYTGLVIYCIFFGLSFGSVGAL-LFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIF 403 (455)
T ss_pred ------chHHHHHHHHHHHHHHhchHHHH-HHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHH
Confidence 11223334444555544433333 33778899999999999999999999999999999999988774 77777
Q ss_pred hhhhHHHHHHHH
Q psy17628 275 GTFAVYCIIGTF 286 (338)
Q Consensus 275 ~~~~~~~~~~~~ 286 (338)
++.+++.+++.+
T Consensus 404 ~~~~~~~li~~~ 415 (455)
T TIGR00892 404 YASGSIVVSAGL 415 (455)
T ss_pred HHhhHHHHHHHH
Confidence 776666555543
No 39
>TIGR00895 2A0115 benzoate transport.
Probab=99.74 E-value=5.2e-17 Score=139.68 Aligned_cols=165 Identities=12% Similarity=-0.006 Sum_probs=129.3
Q ss_pred chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
.......+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+++...
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--------- 102 (398)
T TIGR00895 32 DLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA--------- 102 (398)
T ss_pred HHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc---------
Confidence 34456677888888889999999999999999999999999999999999999999888777776665543
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA 278 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
.+.+..++...+.+.+.+.... ...+++.|.+|++.|++++++......++..+++.+.+.+.+..+|+..+++.+
T Consensus 103 ---~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~ 178 (398)
T TIGR00895 103 ---TNVTQLLILRFLAGLGLGGLMP-NLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGG 178 (398)
T ss_pred ---cchHHHHHHHHHHhcccccchh-hHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhh
Confidence 1223334444455544444433 334789999999999999999999999999999999999989899998888876
Q ss_pred HHHHHHHHHHHhhccCCC
Q psy17628 279 VYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~ 296 (338)
++..+..++.+.++||+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 179 IAPLLLLLLLMRFLPESI 196 (398)
T ss_pred hHHHHHHHHHHHhCCCCC
Confidence 666666666666677764
No 40
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.73 E-value=1.4e-16 Score=136.32 Aligned_cols=167 Identities=10% Similarity=0.030 Sum_probs=118.8
Q ss_pred chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
++.....+.|.++++.|.+..+.+.......++.+++.++.+++.||++||+.+..+..+..++...+... .
T Consensus 220 ~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~---~----- 291 (393)
T PRK09705 220 GYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL---P----- 291 (393)
T ss_pred HHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc---c-----
Confidence 35567788899888889999999999999999999999999999999999999888876666655433321 0
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cceeehh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGT 276 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 276 (338)
. ..... ...+.+.+.+..... ......+.. |++.|++.+|+.+..+.+++.++|.+.+++.+..| +...+.+
T Consensus 292 --~-~~~~~--~~~l~g~g~g~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~ 365 (393)
T PRK09705 292 --L-QLPVL--WAMVCGLGLGGAFPL-CLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAF 365 (393)
T ss_pred --c-hHHHH--HHHHHHHhccchHHH-HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 0 01111 122233333333222 223445555 46789999999999999999999999999999887 4445666
Q ss_pred hhHHHHHHHHHHHhhccCCCCCC
Q psy17628 277 FAVYCIIGTFFVYFVVPETKNKS 299 (338)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~ 299 (338)
.++++++..+..+.+.||++.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 366 HALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHHHHHhccccccch
Confidence 66666666666666678876553
No 41
>KOG2533|consensus
Probab=99.73 E-value=3e-17 Score=141.07 Aligned_cols=227 Identities=14% Similarity=0.040 Sum_probs=128.9
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchh--HHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPV--YLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLV 93 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~--~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
|||.|++. |++.++.+++.++++|+.|. |+.++++.+-. .++.+..+.+ ...++.+...++
T Consensus 205 W~~~FiI~---G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~---~~~~~~~~~~-----------~~~~~~~~~~~~ 267 (495)
T KOG2533|consen 205 WRWLFIIE---GVITLVLGIVVFFFLPDNPSKAWFLTDEEKELV---VERLRESPSG-----------GIENKFKWKGFK 267 (495)
T ss_pred ceeehhHH---HHHHHHHHheEEEEecCChhhccccchHHHHHH---HHHHHhccCC-----------CcccccCHHHHH
Confidence 99999999 99999999999999999996 33222211111 1111111100 001113456788
Q ss_pred HHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh----cCC
Q psy17628 94 EIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGR 168 (338)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr 168 (338)
+.+++|..| .+.++.++.....+.+.+|+|.++++ .|++..+++.+.+...++.+++.+++|+++|| ..+
T Consensus 268 ~a~~dp~vw-----~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~ 342 (495)
T KOG2533|consen 268 EALKDPGVW-----PFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFAR 342 (495)
T ss_pred HHHhchhHH-----HHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHH
Confidence 888888433 23333333333467789999999998 47899999999999999999999999999999 455
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhh-hhHHHHHH
Q psy17628 169 RPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK-GLALGVIC 247 (338)
Q Consensus 169 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r-~~~~~~~~ 247 (338)
|........+..+........ .. ...... ...+.+........++.....++....+.| -+..+...
T Consensus 343 ~~~~~~~~~~~~~~g~~~l~~--~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i 410 (495)
T KOG2533|consen 343 RLLFIVFLCLYAIIGAISLLA--AA---------VLPGAY-GAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAII 410 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hc---------cchHHh-HHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhh
Confidence 555544444443333221111 00 011111 111111111111222333455555544444 44444555
Q ss_pred HHHHHHHHHHHHHHHHHH-Hhcccceeehh
Q psy17628 248 ILGSLIEFVVVKTFDDVE-RAFGTGVAFGT 276 (338)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 276 (338)
...+.++.+.+.+..... ..++|...+..
T Consensus 411 ~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~ 440 (495)
T KOG2533|consen 411 DGTGSAGAISGQLFRSLDAPRYGWGAVFYM 440 (495)
T ss_pred cchhHHHHhhhhhcccccCcchhhhhHHHH
Confidence 555666666666554332 33566666633
No 42
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.73 E-value=1.1e-16 Score=137.75 Aligned_cols=182 Identities=12% Similarity=-0.044 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHH
Q psy17628 103 KATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAIC 182 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 182 (338)
++.+....+.+..............|.+.+++|.+..+.++..+...++..+++++.|+++||+|||+++..+.++..++
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 86 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA 86 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 33444444455555555566777778788888999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy17628 183 IGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFD 262 (338)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 262 (338)
.++.++. ++.+..++...+.+.+.+... +....++.|.+|+++|++++++.+....+|..+++.+.+
T Consensus 87 ~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 87 STATMFA------------TGPESLYLLRILVGIAEAGFL-PGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSG 153 (412)
T ss_pred HHHHHHh------------cCHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776654 122344445555555555443 333367899999999999999999999999999998888
Q ss_pred HHHH------hcccceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628 263 DVER------AFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 263 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
.+.+ ..||++.|.+.++..++..++.++++||+++
T Consensus 154 ~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 154 YILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 7764 3689999988877777766667777888764
No 43
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.72 E-value=5.3e-17 Score=140.85 Aligned_cols=178 Identities=9% Similarity=0.054 Sum_probs=134.1
Q ss_pred HHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHH
Q psy17628 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG 184 (338)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 184 (338)
.+...++..+..+........+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++.++.++.+++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~ 103 (434)
T PRK11663 24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINI 103 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHH
Confidence 33333333333333344567788999999999999999999999999999999999999999999999999888888877
Q ss_pred HHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 185 ALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDV 264 (338)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (338)
+.... .+.+...+...+.+.+.+....... .++.|.+|+++|++++++.+....++..+++.+.+.+
T Consensus 104 ~~~~~------------~~~~~l~~~~~l~g~~~g~~~~~~~-~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l 170 (434)
T PRK11663 104 LFGFS------------SSLWAFALLWVLNAFFQGWGWPVCA-KLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAI 170 (434)
T ss_pred HHHHH------------hHHHHHHHHHHHHHHHHHccchHHH-HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66553 1122333333444444554444444 7889999999999999999999999999999999999
Q ss_pred HHhcccceeehhhhHHHHHHHHHHHhhccCC
Q psy17628 265 ERAFGTGVAFGTFAVYCIIGTFFVYFVVPET 295 (338)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (338)
.+..||++.+.+.+++.++..++..+.++|+
T Consensus 171 ~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 171 ALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999998887776665554555556654
No 44
>KOG2532|consensus
Probab=99.72 E-value=4.7e-17 Score=139.49 Aligned_cols=237 Identities=16% Similarity=0.192 Sum_probs=158.4
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhh---hhhhHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQA---QKKKSL 92 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 92 (338)
|+++|++. |++++++.++.+++..|+|.- +.. ..++|.+.+++.+.+++ +.+.|+
T Consensus 194 W~sifY~~---g~~g~i~~~~w~~~~~d~P~~---h~~----------------is~~El~~I~~~k~~~~~~~~~~vP~ 251 (466)
T KOG2532|consen 194 WPSIFYVF---GIVGLIWFILWFLFYSDSPSK---HPN----------------ISEKELKYIEKGKSEAHVKKKPPVPY 251 (466)
T ss_pred CchHHHHH---HHHHHHHHHHHHHHhcCCccc---CCC----------------CCHHHHHHHHhcccccccCCCCCCCH
Confidence 99999999 999999888888888999952 211 12222233332222211 146799
Q ss_pred HHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCc--
Q psy17628 93 VEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR-- 169 (338)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr-- 169 (338)
+++++++ .++...+..+....+.+.+..|.|.|+++. |++..+.++..+++.+...+..+++|.++||.-+|
T Consensus 252 ~~i~ts~-----~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~l 326 (466)
T KOG2532|consen 252 KAILTSP-----PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRIL 326 (466)
T ss_pred HHHHcCH-----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999987 355555556666667889999999999987 99999999999999999999999999999998663
Q ss_pred -------hHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhH
Q psy17628 170 -------PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLA 242 (338)
Q Consensus 170 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 242 (338)
..-.++....+++++.+++. . ....+..++++.+.....+....... .-..|. .++.-+..
T Consensus 327 s~t~~rkifn~i~~~~~ai~l~~l~~~---~-------~~~~~~a~~~l~~~~~~~g~~~~Gf~-~~~~~~-apq~a~~l 394 (466)
T KOG2532|consen 327 SETTVRKIFNTIAFGGPAVFLLVLAFT---S-------DEHRLLAVILLTIAIGLSGFNISGFY-KNHQDI-APQHAGFV 394 (466)
T ss_pred chHhHHHHHHhHHHHHHHHHHHeeeec---C-------CCcchHHHHHHHHHHHHcccchhhhH-hhhhhc-cchHHHHH
Confidence 11223333334444333332 0 11222333333332222222222211 222333 45678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hcccceeehhhhHHHHHHHHHHHhh
Q psy17628 243 LGVICILGSLIEFVVVKTFDDVER---AFGTGVAFGTFAVYCIIGTFFVYFV 291 (338)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (338)
+|+.+..+.+.++++|.+.+.+.. ...|+..|++.+++.+++.++..++
T Consensus 395 ~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 395 MGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 999999999999999999998873 3468888988888887777554443
No 45
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.71 E-value=3.9e-16 Score=136.98 Aligned_cols=163 Identities=9% Similarity=0.017 Sum_probs=107.9
Q ss_pred HHHhhHHHH-HhccCCCCCcchhhH-HHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628 123 VIFYLKRIL-IATNSKIISPNYGQN-IVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (338)
Q Consensus 123 ~~~~~~~~~-~~~g~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
...+.+.++ ++.|++..+.+.... ...++.+++.+++|+++||+|+|+.+.++..+.++..+.+...... . .
T Consensus 241 ~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-~-~---- 314 (491)
T PRK11010 241 AMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT-D-K---- 314 (491)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-c-c----
Confidence 344455554 457999999888874 5567899999999999999999988776655555444332221110 0 0
Q ss_pred hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHH
Q psy17628 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY 280 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (338)
+.+.......+.....+.+.... +++..+..+++.+++.+++.+....++..+++.+.|.+.+..||...|.+.+++
T Consensus 315 --~~~~l~~~~~l~~~~~g~~~~~~-~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~ 391 (491)
T PRK11010 315 --NLYSMGAAVFFENLCGGMGTAAF-VALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAA 391 (491)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 11111222222222222223333 367788889999999999999999999998999999999999988777777777
Q ss_pred HHHHHHHHHhhccCC
Q psy17628 281 CIIGTFFVYFVVPET 295 (338)
Q Consensus 281 ~~~~~~~~~~~~~~~ 295 (338)
++++.++... .+++
T Consensus 392 ~l~~l~~~~~-~~~~ 405 (491)
T PRK11010 392 AVPGLLLLLV-CRQT 405 (491)
T ss_pred HHHHHHHHHH-HHhc
Confidence 7666555544 4443
No 46
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.70 E-value=1.9e-16 Score=138.83 Aligned_cols=240 Identities=12% Similarity=0.022 Sum_probs=135.2
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
||+.|++. ++++++..++.+.+.+|+|+... ...++.++..++. .++.+++.+.+.+++++
T Consensus 197 w~~~f~i~---~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~i~~~--------------~~~~~~~~~~~~~~~~~ 257 (465)
T TIGR00894 197 WPMIFYVF---GIVGCAWSLLWFVFPADDPSIHP--CISKFEKKYINSS--------------LQGQKGSTRQSLPIKAI 257 (465)
T ss_pred CCeehhhh---hHHHHHHHHHHHHHhcCCcccCC--CCCHHHHHHHHhh--------------cccccCCCCCCCCHHHH
Confidence 99999999 88887766667777788885211 1111111110000 00000011123357777
Q ss_pred HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHH-
Q psy17628 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLL- 173 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~- 173 (338)
++++.. +...+..+....+.+.+..|+|.++++. |++..+.++...+..++..++.+++|+++||+++|+...
T Consensus 258 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~ 332 (465)
T TIGR00894 258 PKSLPV-----WAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSL 332 (465)
T ss_pred hcCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 776532 2223333333334667778999988764 889999999999999999999999999999986543211
Q ss_pred --HHhHHHHHHHH---HHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHH
Q psy17628 174 --ISDICMAICIG---ALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICI 248 (338)
Q Consensus 174 --~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 248 (338)
.......++.. ...+..... .......++...+.+.+.+.. .+..+....|..|. .+|+++++.+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~-~~g~~~g~~~~ 403 (465)
T TIGR00894 333 TAARKIFNGIGGLGPGIFAYALPYL-------SAAFYLTIIILTLANAVSSGP-LAGVLINSLDLAPR-FLGFIKGITGL 403 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-------CCchHHHHHHHHHHHHHhhhh-hhhhhhchhhcChh-HHHHHHHHHHH
Confidence 00111111111 111110000 011122222333333332222 22232445566665 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc---ccceeehhhhHHHHHHHHHH
Q psy17628 249 LGSLIEFVVVKTFDDVERAF---GTGVAFGTFAVYCIIGTFFV 288 (338)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 288 (338)
.+.+++.++|.+.+.+.+.. +|...|.+.+++.+++.++.
T Consensus 404 ~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 446 (465)
T TIGR00894 404 PGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY 446 (465)
T ss_pred HHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence 99999999999999877643 25556666665555555433
No 47
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.70 E-value=8.9e-16 Score=138.55 Aligned_cols=162 Identities=16% Similarity=0.026 Sum_probs=121.0
Q ss_pred HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (338)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
..+....|.+..+.|.+..+.+++.+...++.+++.+++|+++||+|||+.++++.++.+++.++..+.
T Consensus 184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa----------- 252 (742)
T TIGR01299 184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV----------- 252 (742)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 345667788888889999899999999999999999999999999999999999988888777666543
Q ss_pred hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc------------
Q psy17628 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF------------ 268 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 268 (338)
...+.+++..++.+++.+... +...++++|.+|++.|+..+++...+..+|..+++.+...+...+
T Consensus 253 -~s~~~llv~R~l~G~g~g~~~-p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~ 330 (742)
T TIGR01299 253 -QGYGFFLFCRLLSGFGIGGAI-PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQF 330 (742)
T ss_pred -hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccccccc
Confidence 122344555556666555444 444589999999999999999999998898888887766655444
Q ss_pred -ccceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628 269 -GTGVAFGTFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 269 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
+|++.+++.++. .+..++..+++||++
T Consensus 331 ~gWR~l~~i~~lp-~ll~ll~~~~lPESP 358 (742)
T TIGR01299 331 HSWRVFVIVCAFP-CVFAIGALTFMPESP 358 (742)
T ss_pred ccHHHHHHHHHHH-HHHHHHHHHHcCCCH
Confidence 355555444443 344445566789974
No 48
>PRK03545 putative arabinose transporter; Provisional
Probab=99.70 E-value=3.9e-16 Score=133.76 Aligned_cols=161 Identities=13% Similarity=0.027 Sum_probs=126.6
Q ss_pred HHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (338)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (338)
......|.+.++.|.+..+.++..+...++..++.++.|.++||+|||+++..+..+.+++.+.+.+.
T Consensus 27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------ 94 (390)
T PRK03545 27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------------ 94 (390)
T ss_pred HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh------------
Confidence 34445788888999999999999999999999999999999999999999999988888887766654
Q ss_pred hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHH
Q psy17628 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC 281 (338)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (338)
++.+..++...+.+.+.+.. .+...+++.|.+|+++|++++|+......++..++|.+.+.+.+..||++.|++.++++
T Consensus 95 ~~~~~l~~~r~~~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~ 173 (390)
T PRK03545 95 WNFTVLLISRIGIAFAHAIF-WSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGA 173 (390)
T ss_pred ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHH
Confidence 12233344444444443322 23333688999999999999999999999999999999998888899999998888877
Q ss_pred HHHHHHHHhhccCC
Q psy17628 282 IIGTFFVYFVVPET 295 (338)
Q Consensus 282 ~~~~~~~~~~~~~~ 295 (338)
++..+..+...||.
T Consensus 174 ~l~~~~~~~~~~~~ 187 (390)
T PRK03545 174 LITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHhCCCC
Confidence 77765655556654
No 49
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.69 E-value=3e-16 Score=137.47 Aligned_cols=154 Identities=14% Similarity=0.085 Sum_probs=92.6
Q ss_pred HHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCch-------HHHHHhHHHHHHHHHHHHHHHHh
Q psy17628 122 VVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP-------LLLISDICMAICIGALGYYFYLL 193 (338)
Q Consensus 122 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-------~~~~~~~~~~~~~~~~~~~~~~~ 193 (338)
....+.|.++.+ .|++..+.+....+..++.+++.+++|+++||++||+ .......+.++..+++...
T Consensus 270 ~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~---- 345 (476)
T PLN00028 270 TMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA---- 345 (476)
T ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc----
Confidence 455667777655 4999888999999999999999999999999998762 1112212111211111110
Q ss_pred hcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccee
Q psy17628 194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVA 273 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (338)
.+....+....+++.+.....+. .+++..+..| +.||++.|+.+..+.+++.+++.+.+ ..+..+|...
T Consensus 346 --------~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~ 414 (476)
T PLN00028 346 --------NSLGAAIVVMILFSIFVQAACGA-TFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETG 414 (476)
T ss_pred --------chHHHHHHHHHHHHHHHHHhhhh-hcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhH
Confidence 01112222233333333222222 3356666654 68999999998888888888877654 1122346677
Q ss_pred ehhhhHHHHHHHHHHHh
Q psy17628 274 FGTFAVYCIIGTFFVYF 290 (338)
Q Consensus 274 ~~~~~~~~~~~~~~~~~ 290 (338)
|.+.+++.+++.++.++
T Consensus 415 f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 415 ISLMGVMIIACTLPVAF 431 (476)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777666666554443
No 50
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.69 E-value=2.6e-16 Score=135.23 Aligned_cols=164 Identities=14% Similarity=0.064 Sum_probs=130.5
Q ss_pred HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (338)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
.......|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++..++...
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----------- 79 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA----------- 79 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----------
Confidence 455566777788889999999999999999999999999999999999999999988888777766554
Q ss_pred hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHH
Q psy17628 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY 280 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (338)
.+.+..++...+.+.+.+....... .++.|.+|+++|++++++......++..+++.+.+.+.+..+|++.+.+.+++
T Consensus 80 -~~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (399)
T TIGR00893 80 -GAYVSLYILRVLLGAAEAPFFPGII-LIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVL 157 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHhhhhHHH-HHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 1223444555555555554443333 78999999999999999999999999999999999888989999988887777
Q ss_pred HHHHHHHHHhhccCCCC
Q psy17628 281 CIIGTFFVYFVVPETKN 297 (338)
Q Consensus 281 ~~~~~~~~~~~~~~~~~ 297 (338)
.++..++.++..||+++
T Consensus 158 ~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 158 GIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHHHHHhhheecCCCC
Confidence 77666666665666543
No 51
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.68 E-value=4e-16 Score=133.63 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=129.7
Q ss_pred chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
+........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.+.....
T Consensus 20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--------- 90 (385)
T TIGR00710 20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS--------- 90 (385)
T ss_pred HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---------
Confidence 34555566788888889999999999999999999999999999999999999999888888777766543
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA 278 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
.+.+...+...+.+.+.+....... +++.|.+|+++|++++++.+....++..+++.+.+.+.+..+|+..+++.+
T Consensus 91 ---~~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~ 166 (385)
T TIGR00710 91 ---NNIETLLVLRFVQAFGASAGSVISQ-ALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLS 166 (385)
T ss_pred ---ccHHHHHHHHHHHHcchhHHHHHHH-HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 1122333444444444443333333 788999999999999999999999999999999998888889998888877
Q ss_pred HHHHHHHHHHHhhccCCCC
Q psy17628 279 VYCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~ 297 (338)
++.++..+..++..||+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 167 LAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHHHhCCCCCC
Confidence 7777776666666676543
No 52
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.68 E-value=1.2e-15 Score=130.99 Aligned_cols=147 Identities=19% Similarity=0.122 Sum_probs=99.7
Q ss_pred hHHHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 120 INVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 120 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
.+....+.|.+.+ +.|.+..+.+.......++..++.++.|+++||+|||+.+.....+..+......... ..
T Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~~----- 308 (394)
T TIGR00883 235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL-LD----- 308 (394)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-hc-----
Confidence 4556677888884 4588888888888889999999999999999999999987755444433322111110 00
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhcc-cceeeh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL-GSLIEFVVVKTFDDVERAFG-TGVAFG 275 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~ 275 (338)
....+.......+.+.+.+....+.. +++.|.+|++.|++++++.+.. ..++..++|.+.+.+.++.| |+..++
T Consensus 309 --~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~ 384 (394)
T TIGR00883 309 --SGSFTLFFFLVLGLALIGGMYTGPMG-SFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGY 384 (394)
T ss_pred --CCchHHHHHHHHHHHHHHHHHhhhHH-HHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHH
Confidence 01222333333444444444444443 7889999999999999985544 55777899999999999888 544433
No 53
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.68 E-value=8.5e-16 Score=132.66 Aligned_cols=157 Identities=8% Similarity=0.016 Sum_probs=106.3
Q ss_pred HHHhhHHHHHhccCCCCC----cchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 123 VIFYLKRILIATNSKIIS----PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 123 ~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
...+.+.+..+.+.+..+ .+....+.+++.+++.+..|+++||+|||+.+..+..+..++.+.....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--------- 308 (408)
T PRK09874 238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV--------- 308 (408)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh---------
Confidence 344556665554322222 2344455667778888999999999999999988877666555443322
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA 278 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
...+...+...+.+.+.+....... +++.+..|++.||+.+++.+....++..++|.+.+.+.+..|++..|.+.+
T Consensus 309 ---~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~ 384 (408)
T PRK09874 309 ---QTPLQLGILRFLLGAADGALLPAVQ-TLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTA 384 (408)
T ss_pred ---ccHHHHHHHHHHHHhhhHhhHHHHH-HHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHH
Confidence 1122233333344444443333333 566777888999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHhhc
Q psy17628 279 VYCIIGTFFVYFVV 292 (338)
Q Consensus 279 ~~~~~~~~~~~~~~ 292 (338)
++.++..++.++..
T Consensus 385 ~~~l~~~~~~~~~~ 398 (408)
T PRK09874 385 GVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766555433
No 54
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.68 E-value=4.1e-16 Score=133.18 Aligned_cols=230 Identities=16% Similarity=0.122 Sum_probs=128.6
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
||+.|++. +++.++..++.+++.||+|+....+...++. .++.+.+ + ++..++.+..+...++.
T Consensus 149 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~----~-~~~~~~~~~~~~~~~~~ 212 (379)
T TIGR00881 149 WHWVFIVP---GIIAIIVSLICFLLLRDSPQSCGLPPAEEMP--------NEEPDGD----A-EKKEEELTKKQIFLQYV 212 (379)
T ss_pred chhHHHHH---HHHHHHHHHHHheeeCCCccccccCccccCc--------ccccccc----c-ccccccccchHHHHHHH
Confidence 99999998 7777776777777888877521111000000 0000000 0 00000011122234556
Q ss_pred HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 174 (338)
++++..+... +..+...........+.|.++++ .|++..+.+.......++.+++.++.|+++||..+|+....
T Consensus 213 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~ 287 (379)
T TIGR00881 213 LLNKVLWYIS-----LGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPL 287 (379)
T ss_pred HhcchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHH
Confidence 6665322211 11111222244566777887765 48888888999999999999999999999998643332222
Q ss_pred HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHH
Q psy17628 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE 254 (338)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 254 (338)
................ ... ..............+... .+..+..+.+..|.+|++.|+++.|+.+....+++
T Consensus 288 ~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 359 (379)
T TIGR00881 288 AVFFMALIIVSLLVYW-LNP------AANPLMDLICLFALGFLV-YGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGG 359 (379)
T ss_pred HHHHHHHHHHHHHHHh-cCc------chhHHHHHHHHHHHHHHH-hhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhh
Confidence 2111111111111110 000 001112222222233222 22223333577899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccceee
Q psy17628 255 FVVVKTFDDVERAFGTGVAF 274 (338)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~ 274 (338)
.++|.+.+.+.+..||+..|
T Consensus 360 ~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 360 ILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred hhhhhhHHHHHHhhcccccC
Confidence 99999999999998887643
No 55
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.68 E-value=4.6e-15 Score=127.65 Aligned_cols=157 Identities=15% Similarity=0.134 Sum_probs=111.3
Q ss_pred HHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (338)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (338)
....+.+.+..+.|. .+.+.......++.+++.++.|++.||+|+|+.+..+..+.+++.+.+...
T Consensus 234 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------ 299 (399)
T PRK05122 234 TIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA------------ 299 (399)
T ss_pred HHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh------------
Confidence 445566776666665 344566677888889999999999999999999888877766665544432
Q ss_pred hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHH
Q psy17628 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC 281 (338)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (338)
.+.+..++...+.+.+.+....... ....|.+|++.|++++|+.+....++..+++.+.+.+.+..|++..+++.+++.
T Consensus 300 ~~~~~~~~~~~l~G~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 378 (399)
T PRK05122 300 PSPWMALIGAALTGFGFSLVFPALG-VEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAA 378 (399)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 1122333334444444443333333 456788999999999999999999999999999999999889888888777777
Q ss_pred HHHHHHHHhhccC
Q psy17628 282 IIGTFFVYFVVPE 294 (338)
Q Consensus 282 ~~~~~~~~~~~~~ 294 (338)
+++.++.++ .++
T Consensus 379 ~~~~~~~~~-~~~ 390 (399)
T PRK05122 379 LLGLALTWL-LYR 390 (399)
T ss_pred HHHHHHHHH-hcc
Confidence 666655444 444
No 56
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.67 E-value=2.3e-15 Score=128.97 Aligned_cols=183 Identities=11% Similarity=-0.057 Sum_probs=111.6
Q ss_pred HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHH-HHHHHHHHHHHhhhhcCCc
Q psy17628 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKAGRR 169 (338)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~grr 169 (338)
++++.+|+|..+......++ ... .......+.+.++++.|++..+.+......++ ..+++.++.|++.||+|+|
T Consensus 200 ~~~~~l~~~~~~~~~~~~~l-~~~----~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~ 274 (390)
T TIGR02718 200 SLFRFFRRPLAWSLLALALL-SAM----TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW 274 (390)
T ss_pred HHHHHHcCcCHHHHHHHHHH-HHH----HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45677777743332222222 111 13344556777888889999998888877764 5567789999999999999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCc-hhhhhHHHHHHH
Q psy17628 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP-DVKGLALGVICI 248 (338)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~ 248 (338)
+.+..+..+.++........ ...... ...........+.....+....... +...+..++ +.+++.+++.+.
T Consensus 275 ~~l~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~ 347 (390)
T TIGR02718 275 RTFILGVGLAGSLALLWFAQ-AAFWLA-----PGIAVAWSCSAFGSLITGITSVAIY-TAFMRFAGDGDQAGTDVTAVQS 347 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHcccC-----CcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCcccchHHHHHHHHH
Confidence 99887766553332222111 100000 0111111211222222333323332 344455554 789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHH
Q psy17628 249 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT 285 (338)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (338)
...++..++|.+.+.+.+..|+...|...+.+.+++.
T Consensus 348 ~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 348 TRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 9999999999999999999888777766655554443
No 57
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.67 E-value=1.4e-15 Score=130.13 Aligned_cols=161 Identities=12% Similarity=0.130 Sum_probs=127.0
Q ss_pred HHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (338)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (338)
......|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++....
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------ 105 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------------ 105 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 34446778888899999999999999999999999999999999999999999999988877665543
Q ss_pred hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHH
Q psy17628 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC 281 (338)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (338)
.+.+..++...+.+.+.+.... ....++.|.+|+++|+.++++......++..++|.+.+.+.+..+|++.|++.+++.
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~ 184 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWA-MSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMG 184 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 1233445555555555554433 333788999999999999999999999999999999999999899999888877666
Q ss_pred HHHHHHHHhhccCC
Q psy17628 282 IIGTFFVYFVVPET 295 (338)
Q Consensus 282 ~~~~~~~~~~~~~~ 295 (338)
++..+......||+
T Consensus 185 ~~~~l~~~~~~p~~ 198 (394)
T PRK10213 185 VLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHHHHCCCC
Confidence 65554444445664
No 58
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.67 E-value=1.9e-15 Score=129.11 Aligned_cols=175 Identities=12% Similarity=-0.000 Sum_probs=126.6
Q ss_pred HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCch
Q psy17628 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP 170 (338)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 170 (338)
+.++++|+|..+...+...+ ..........+.|.++++.|.+..+.+.......++.+++.++.+++.||+|+|+
T Consensus 197 ~~~~~l~~~~~~~~l~~~~l-----~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~ 271 (382)
T TIGR00902 197 AFIALLKNPMNLRFLAAVCL-----IQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD 271 (382)
T ss_pred hHHHHHcChHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH
Confidence 35667777643322221111 1222455666788888889999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHH-H
Q psy17628 171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICI-L 249 (338)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~-~ 249 (338)
.+.++.+...+....+.+. ++.+..+....+.+..++....... .++.+. |++.|++++++.+. .
T Consensus 272 ~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~q~l~g~~~~~~~~~~~-~~i~~~-~~~~~~~~q~~~~~~~ 337 (382)
T TIGR00902 272 LLLISAIACVGRWAIIGAI------------EAFPLIFLLQILHCGTFAVCHLAAM-RYIAAQ-PGSEIAKLQALYNALA 337 (382)
T ss_pred HHHHHHHHHHHHHHHHHhH------------hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhC-CHhhHHHHHHHHHHHH
Confidence 9999988888887666543 1224445556666666665555554 678887 99999999999764 5
Q ss_pred HHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHH
Q psy17628 250 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT 285 (338)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (338)
..++..+++.+.|.+.+..|. ..+...+++.+++.
T Consensus 338 ~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 338 MGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 678888999999999999885 45666666555443
No 59
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.67 E-value=4.6e-16 Score=134.20 Aligned_cols=164 Identities=10% Similarity=-0.023 Sum_probs=126.1
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+++...
T Consensus 31 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 100 (406)
T PRK11551 31 LQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA---------- 100 (406)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----------
Confidence 4456667788888899999999999999999999999999999999999999999888777776555443
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV 279 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (338)
.+.+..++...+.+.+.+....... +++.|.+|++.|++++++.+....++..+++.+.+.+.+..+|+..+++.++
T Consensus 101 --~~~~~~~~~~~l~G~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (406)
T PRK11551 101 --WDFPSLLVARLLTGVGLGGALPNLI-ALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGV 177 (406)
T ss_pred --ccHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence 1223344444555554444433333 7889999999999999999999999999998888777777888888877766
Q ss_pred HHHHHHHHHHhhccCCC
Q psy17628 280 YCIIGTFFVYFVVPETK 296 (338)
Q Consensus 280 ~~~~~~~~~~~~~~~~~ 296 (338)
+.++..++...++||++
T Consensus 178 ~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 178 GPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHhCCCCh
Confidence 66665555555677753
No 60
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.67 E-value=3.1e-15 Score=127.82 Aligned_cols=155 Identities=12% Similarity=0.040 Sum_probs=97.4
Q ss_pred HHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628 123 VIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (338)
Q Consensus 123 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (338)
...|.+.++.+ .|++..+.+.......++.+++.++.+++.||+|+|+.+..+..+.+++.+++... .
T Consensus 218 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~-----------~ 286 (382)
T PRK10091 218 WFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF-----------G 286 (382)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHH-----------H
Confidence 34455555554 68899899999999999999999999999999999999888877766665444322 0
Q ss_pred hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cccceeehhhhHH
Q psy17628 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA-FGTGVAFGTFAVY 280 (338)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 280 (338)
+..+..++...+.+.+......+.......+..|.+.++.+ ..+....+|..++|.+.+.+.+. .+++..+...+++
T Consensus 287 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~ 364 (382)
T PRK10091 287 GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALL 364 (382)
T ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHH
Confidence 01122222222232222222222221233444455555544 34667788999999999999885 5676667666555
Q ss_pred HHHHHHHHHh
Q psy17628 281 CIIGTFFVYF 290 (338)
Q Consensus 281 ~~~~~~~~~~ 290 (338)
+.+.......
T Consensus 365 ~~~~~~~~~~ 374 (382)
T PRK10091 365 SFAAMSSLLL 374 (382)
T ss_pred HHHHHHHHHH
Confidence 5554443333
No 61
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1.3e-15 Score=125.67 Aligned_cols=161 Identities=16% Similarity=0.068 Sum_probs=140.9
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
-+.....+|.+-+|.|.|..+++...+.+.++..+++++...+.||+.||++++..+.++.++.++.++..
T Consensus 29 Efv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp--------- 99 (394)
T COG2814 29 EFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP--------- 99 (394)
T ss_pred HHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 44667788999999999999999999999999999999999999999999999999999999999888862
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV 279 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (338)
+.....+...+.+...+..+.... +...++.|+++|++++++......++..++.++..++-+.+|||.+|+..+.
T Consensus 100 ---~f~~Ll~aR~~~g~a~G~f~~i~~-~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~ 175 (394)
T COG2814 100 ---SFAVLLLARALAGLAHGVFWSIAA-ALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAV 175 (394)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHH
Confidence 233445555666666665554444 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q psy17628 280 YCIIGTFFVYFVVP 293 (338)
Q Consensus 280 ~~~~~~~~~~~~~~ 293 (338)
+.++..+..+..+|
T Consensus 176 l~ll~~~~~~~~lP 189 (394)
T COG2814 176 LALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999988888888
No 62
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.67 E-value=8.4e-16 Score=134.11 Aligned_cols=164 Identities=12% Similarity=0.046 Sum_probs=117.6
Q ss_pred HHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhh
Q psy17628 123 VIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG 202 (338)
Q Consensus 123 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (338)
+....|.+.++ |++..+.++..+...++..+++++.|+++||+|||++++.+.++.+++.+.+.+.... ..
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~--------~~ 118 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--------TS 118 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc--------cc
Confidence 44566777666 9999999999999999999999999999999999999999988888877766553100 01
Q ss_pred hchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHhcccceeehhhhHHH
Q psy17628 203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTF-DDVERAFGTGVAFGTFAVYC 281 (338)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 281 (338)
+.+..++...+.+.+.+....+.. ..+.|.+|++.|++++++.+....+++.+.+++. .......+|++.|++.+++.
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~ 197 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAA 197 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHH-HHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 122334444455555554444444 5678999999999999998888888765544443 22333448888888877777
Q ss_pred HHHHHHHHhhccCCC
Q psy17628 282 IIGTFFVYFVVPETK 296 (338)
Q Consensus 282 ~~~~~~~~~~~~~~~ 296 (338)
++..++..+++||++
T Consensus 198 ~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 198 ILVALFAFAMMRDTP 212 (452)
T ss_pred HHHHHHHHHHccCCH
Confidence 776666666677654
No 63
>PRK10054 putative transporter; Provisional
Probab=99.66 E-value=1.6e-15 Score=129.87 Aligned_cols=165 Identities=14% Similarity=0.074 Sum_probs=121.4
Q ss_pred hcchHHHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy17628 117 FSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKL 195 (338)
Q Consensus 117 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (338)
..+.+....+.|.+++ +.|++..+.++..+...+...+++++.|+++||+|||+++..+.+...++.+.+.+.
T Consensus 20 ~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~------ 93 (395)
T PRK10054 20 TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV------ 93 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH------
Confidence 3345666677777665 569999999999999999999999999999999999999998888777776655443
Q ss_pred ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeh
Q psy17628 196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFG 275 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (338)
++.+..++...+.+...+ ...+....+..|.+|++.|++++++.+...+++..++|.+.+.+.+ .+|+..|.
T Consensus 94 ------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~ 165 (395)
T PRK10054 94 ------NNVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFW 165 (395)
T ss_pred ------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHH
Confidence 111222333333333333 2233334678899999999999999999999999999999887764 68988888
Q ss_pred hhhHHHHHHHHHHHhhccCC
Q psy17628 276 TFAVYCIIGTFFVYFVVPET 295 (338)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~ 295 (338)
+.+++.++..++..+..|+.
T Consensus 166 ~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 166 LAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 77766666655555545554
No 64
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.66 E-value=7.8e-16 Score=132.07 Aligned_cols=180 Identities=15% Similarity=0.123 Sum_probs=135.0
Q ss_pred HHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHH
Q psy17628 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG 184 (338)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 184 (338)
.+.+..........+........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.....++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 4 FLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence 34444444555555566677788999999999999999999999999999999999999999999999998888777776
Q ss_pred HHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 185 ALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDV 264 (338)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (338)
.+... .+.+..++...+.+.+.+.... ..+.++.|.+|++.|+++.++.+....++..++|.+.+.+
T Consensus 84 ~~~~~------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l 150 (392)
T PRK10473 84 LCSLA------------ETSSLFLAGRFLQGIGAGCCYV-VAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI 150 (392)
T ss_pred HHHHh------------CcHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65543 1112233334444444333233 3347889999999999999999999889988898888887
Q ss_pred HHhcccceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628 265 ERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
.+..+|+..+++.+.+..+..++..+..||+++
T Consensus 151 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 151 MLKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 788899888888887777777666666777643
No 65
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.66 E-value=6.3e-15 Score=127.06 Aligned_cols=209 Identities=15% Similarity=0.083 Sum_probs=125.2
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
||+.|++. +++.++..+..++..||+++.. ++ + .. . ++...++++.
T Consensus 166 w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~--~------------~~----~----------~~~~~~~~~~ 211 (406)
T PRK15402 166 WRGMFVLF---AALAALSFFGLWRAMPETAGRV---GE--K------------LS----L----------KELGRDYKLV 211 (406)
T ss_pred ccHHHHHH---HHHHHHHHHHHHHhCCCCCccc---cc--c------------cc----H----------HHHHHHHHHH
Confidence 99999998 6776665555566678875310 00 0 00 0 0011234566
Q ss_pred HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 174 (338)
++++..+...+. ..+. .........+.|.++.+ .|.+..+.+.......++.+++.++.++++||+++|+.+..
T Consensus 212 ~~~~~~~~~~~~-~~~~----~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~ 286 (406)
T PRK15402 212 LKNRRFVAGALA-LGLV----SLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRM 286 (406)
T ss_pred HcCcHHHHHHHH-HHHH----HHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 776633221111 1111 11122344556766544 58888777777777778888999999999999999999888
Q ss_pred HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHH
Q psy17628 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE 254 (338)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 254 (338)
+..+..++..++........ ...++......+.+.+.+....... .... ..+++.||+..++.+....++.
T Consensus 287 ~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~g~g~~~~~~~~~-~~~~-~~~~~~~g~~~~~~~~~~~~~~ 357 (406)
T PRK15402 287 GLWPMVAGLLLAALATVISS-------HAYLWLTAGLSLYAFGIGLANAGLY-RLTL-FSSDVSKGTVSAAMGMLSMLIF 357 (406)
T ss_pred HHHHHHHHHHHHHHHHHccc-------ccHHHHHHHHHHHHHHHHHHhhhHH-HHHh-hhccccccHHHHHHHHHHHHHH
Confidence 87777666665554321110 1122233334444444443332222 2222 2334789999999999999999
Q ss_pred HHHHHHHHHHHHhcccce
Q psy17628 255 FVVVKTFDDVERAFGTGV 272 (338)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~ 272 (338)
.+++.+.+.+.+..++..
T Consensus 358 ~~g~~~~~~l~~~~~~~~ 375 (406)
T PRK15402 358 TVGIELSKHAYLGGGNGL 375 (406)
T ss_pred HHHHHHHHhcccCCchHH
Confidence 999999988877766544
No 66
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.66 E-value=2.4e-15 Score=129.22 Aligned_cols=241 Identities=12% Similarity=0.135 Sum_probs=142.9
Q ss_pred eechhhhhhhcch-----hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHH
Q psy17628 3 VSGILYTYVIGSL-----YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE 77 (338)
Q Consensus 3 ~~G~~~~~~i~~~-----Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 77 (338)
++|..+++.++.. ||+.|++. ++++++..++.+...||+|+. ++.++. .+.
T Consensus 143 ~~g~~~g~~~~g~l~~~~~~~~f~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~----~~~---------- 198 (396)
T TIGR00882 143 CVGWALCASIAGILFSIDPQIVFWLG---SGFALILMLLLMFAKPKAPSS-------ATVANA----LGA---------- 198 (396)
T ss_pred ccHHHHHHHHHhhhhccCchHHHHHH---HHHHHHHHHHHHHhCCCCchh-------hhhhcc----ccc----------
Confidence 3555556665554 99999999 777777555555555665421 000000 000
Q ss_pred HHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc----cCCCCCcchhhHHHHHHHH
Q psy17628 78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT----NSKIISPNYGQNIVGFIQV 153 (338)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~ 153 (338)
++++.+..+.++.++++..+...+..+... ..+.....+.+.++++. +.+....+...+...+...
T Consensus 199 -----~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~ 268 (396)
T TIGR00882 199 -----NASAFSLKLALELFRQRKFWMFVLYVVGVA-----CVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNA 268 (396)
T ss_pred -----ccCCCCHHHHHHHHcCCcHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 000111234677788764332222211111 11223333445554443 3344455677777888888
Q ss_pred HHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeecc
Q psy17628 154 IMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL 233 (338)
Q Consensus 154 ~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 233 (338)
++.+..+++.||+|||+.+.++..+.++...+.... .+.+..+....+.+.+...... ....+..+.
T Consensus 269 ~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~ 335 (396)
T TIGR00882 269 LIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA------------TTALEVVILKMLHAFEVPFLLV-GCFKYITSQ 335 (396)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc------------CChHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 899999999999999999988877776655443321 1222333333333333322211 122456677
Q ss_pred CCchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHh
Q psy17628 234 FTPDVKGLALGV-ICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYF 290 (338)
Q Consensus 234 ~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (338)
.|++.++++.+. .+....+++.+++.+.|.+.+..|++..|.+.+++.++..++..+
T Consensus 336 ~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 336 FDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 888888887766 567889999999999999999999988888877777766655443
No 67
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.66 E-value=1.4e-15 Score=134.00 Aligned_cols=179 Identities=16% Similarity=0.072 Sum_probs=137.8
Q ss_pred HHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHH
Q psy17628 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG 184 (338)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 184 (338)
.+....+..+.............|.+.++.|.+..+.++..+.+.++...+.++.|+++||+|||+++..+..+..++.+
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34444444444454566777889999999998999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 185 ALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTFDD 263 (338)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 263 (338)
.++.. ++.+..++...+.+.+.+....... ..+.+.+ |++.|++++|+......++..++|.+.+.
T Consensus 87 ~~~~a------------~~~~~li~~r~l~G~g~~~~~~~~~-~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~ 153 (495)
T PRK14995 87 AAAFS------------PTASWLIATRALLAIGAAMIVPATL-AGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGI 153 (495)
T ss_pred HHHHc------------CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77664 1233444445555555443332222 4455554 78899999999999999999999999999
Q ss_pred HHHhcccceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628 264 VERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
+.+..+|++.|++...+.++..++..+++|+.+
T Consensus 154 l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 154 LLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred hhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999998877777777666666677643
No 68
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.66 E-value=2.5e-15 Score=129.54 Aligned_cols=179 Identities=13% Similarity=0.069 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHH
Q psy17628 104 ATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI 183 (338)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 183 (338)
+.+....+................|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 91 (405)
T TIGR00891 12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGT 91 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34444444444455556677778888888899999999999999999999999999999999999999999888888877
Q ss_pred HHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 184 GALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDD 263 (338)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 263 (338)
++..+. .+.+..++...+.+.+.+....... +++.|.+|+++|++++++.+....+|..+++.+.+.
T Consensus 92 ~~~~~~------------~~~~~l~~~~~l~G~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 158 (405)
T TIGR00891 92 LACGFA------------PGYITMFIARLVIGIGMGGEYGSSA-AYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSL 158 (405)
T ss_pred HHHHHh------------ccHHHHHHHHHHHHhhhhhhhHHHH-HHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666543 1122334444555555444443333 788999999999999999999999999999998888
Q ss_pred HHHhcc--cceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628 264 VERAFG--TGVAFGTFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 264 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
+.+..+ |+..+.+.++..++ .++.....||++
T Consensus 159 l~~~~~~~w~~~f~~~~~~~~~-~~~~~~~~~~~~ 192 (405)
T TIGR00891 159 VVPVWGDGWRALFFISILPIIF-ALWLRKNIPEAE 192 (405)
T ss_pred HHHhcCccHHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence 877666 87777654433333 333444466654
No 69
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.66 E-value=1e-14 Score=125.50 Aligned_cols=162 Identities=15% Similarity=0.122 Sum_probs=111.1
Q ss_pred chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHH-HHhHHHHHHHHHHHHHHHHhhccc
Q psy17628 119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLL-ISDICMAICIGALGYYFYLLKLDE 197 (338)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 197 (338)
+.+....+.|.+.++.|++..+.+.......++..++.++.|+++||+|||+.+. .+.+...++.+.+.......
T Consensus 237 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~---- 312 (402)
T TIGR00897 237 GLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF---- 312 (402)
T ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc----
Confidence 3556778899999888999888888888889999999999999999999988764 23333333322222211000
Q ss_pred chhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhh
Q psy17628 198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTF 277 (338)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (338)
....+..++...+.+.+.+. ..+.. ..+.|..| +.|++++|+.+....+++.++|.+.+.+.+..|+...+++.
T Consensus 313 ---~~~~~~~~~~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~ 386 (402)
T TIGR00897 313 ---GHSFAVALIIAIALGIFLAG-YVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIF 386 (402)
T ss_pred ---CCcHHHHHHHHHHHHHHHHH-HHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 00112222333333333332 23333 45567655 57999999999999999999999999999999988888888
Q ss_pred hHHHHHHHHHHHh
Q psy17628 278 AVYCIIGTFFVYF 290 (338)
Q Consensus 278 ~~~~~~~~~~~~~ 290 (338)
+++.++..++..+
T Consensus 387 a~~~~i~~~~~~~ 399 (402)
T TIGR00897 387 AALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHH
Confidence 8777776655544
No 70
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.66 E-value=1.1e-15 Score=134.87 Aligned_cols=174 Identities=15% Similarity=0.071 Sum_probs=135.4
Q ss_pred HHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHH
Q psy17628 110 GLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYY 189 (338)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 189 (338)
.+..+.............|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.++.+..+..++.+++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 87 (485)
T TIGR00711 8 MLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA 87 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc
Confidence 33333344445567778899999999999999999999999999999999999999999999999988888887766543
Q ss_pred HHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17628 190 FYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG 269 (338)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (338)
.+....++...+.+.+.+.. .+....++.|.+|++.|++++++......++..+++.+.+.+.++.+
T Consensus 88 ------------~~~~~l~~~~~~~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 154 (485)
T TIGR00711 88 ------------PNLELMIIFRVIQGFGGGPL-IPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH 154 (485)
T ss_pred ------------CCHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence 12233344444444444433 33444788999999999999999999999999999999999999999
Q ss_pred cceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628 270 TGVAFGTFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
|++.|++.+.+.++..++..+..||++
T Consensus 155 w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 155 WRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred ceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 999998877777766666666666643
No 71
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.65 E-value=1.7e-15 Score=129.33 Aligned_cols=164 Identities=13% Similarity=0.070 Sum_probs=128.7
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.++....
T Consensus 19 ~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~---------- 88 (382)
T PRK10091 19 EFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS---------- 88 (382)
T ss_pred HHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh----------
Confidence 4456677888888999999999999999999999999999999999999999999999888887766654
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV 279 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (338)
++.+..++...+.+.+.+....... .++.|.+|+++|+.++++......++..+++.+.+.+.+..+|++.+.+.+.
T Consensus 89 --~~~~~l~~~r~l~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~ 165 (382)
T PRK10091 89 --SSYLMLAIGRLVSGFPHGAFFGVGA-IVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAV 165 (382)
T ss_pred --CcHHHHHHHHHHHHhhhHHHHHHHH-HHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHH
Confidence 1233444444455544443333233 5778999999999999998888889999999998888888899999988877
Q ss_pred HHHHHHHHHHhhccCCC
Q psy17628 280 YCIIGTFFVYFVVPETK 296 (338)
Q Consensus 280 ~~~~~~~~~~~~~~~~~ 296 (338)
+.++..+..+...||.+
T Consensus 166 ~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 166 FNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 77666655556677753
No 72
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.65 E-value=7e-15 Score=124.94 Aligned_cols=133 Identities=10% Similarity=-0.008 Sum_probs=101.6
Q ss_pred HhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhh
Q psy17628 125 FYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGL 203 (338)
Q Consensus 125 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (338)
.+.|.+.++ .|.+..+.+.......++.+++.++.+++.||++||+.+..+..+.+++....... ..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 300 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT-----------PPN 300 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh-----------chh
Confidence 677888776 58888888999999999999999999999999999999888766666665544432 001
Q ss_pred chHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17628 204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG 269 (338)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (338)
.+...+...+.+.+.+.... ...+++.|.+|++.|+++.|+.+....++..+++.+.+.+.+..|
T Consensus 301 ~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 301 FPLFLVLWFAIGVGYGPINV-PQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 23334444455555444433 333788999999999999999999999999999999999888654
No 73
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.65 E-value=6.9e-15 Score=120.20 Aligned_cols=228 Identities=19% Similarity=0.263 Sum_probs=162.3
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
||.+..+. .+..++..++.++.+.|.|......+ +.....++.+
T Consensus 171 w~~~~~i~---~~~l~v~~v~~~~~~~d~p~~r~~~~---------------------------------~~~~~~~~~v 214 (417)
T COG2223 171 WRNVAGIY---VVALAIAAVLAWLGMNDVPEHRASVK---------------------------------PQLPAQLKAV 214 (417)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHhCCChhhhcccc---------------------------------ccchhHHHHH
Confidence 88888888 56666667778888888874211100 0000345566
Q ss_pred HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 174 (338)
++++..| .+.+.++.++.++..+..++|.++++. |.+..+++.......+...+..+++|+++||+|.++++.+
T Consensus 215 ~~~~~~W-----~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~ 289 (417)
T COG2223 215 FSNKDTW-----LLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLA 289 (417)
T ss_pred hcCcchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHH
Confidence 6665332 233334444555667888899888776 9999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHH
Q psy17628 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE 254 (338)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 254 (338)
....++++..+.......... ..+....+..+.....+.+.+.+.+. .+++.++|. +-|...|+....+.+|+
T Consensus 290 ~f~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~l~l~~~~G~GnGsvf-k~Ip~if~~-~~G~v~G~vga~G~lGG 362 (417)
T COG2223 290 VFVGMALAAALLSLFLTGFGH-----GGSFVVFVAVFLALFVFAGLGNGSVF-KMIPVIFPK-ETGAVTGIVGAIGGLGG 362 (417)
T ss_pred HHHHHHHHHHHHHcccccccc-----CcchHHHHHHHHHHHHHhccCcchhe-eechHHHHh-hhhHHHHHHHHhccccc
Confidence 988888887776654211110 12233444445555556666666555 888888886 56888999999999999
Q ss_pred HHHHHHHHHHHHhcc-cceeehhhhHHHHHHHHHHHhh
Q psy17628 255 FVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYFV 291 (338)
Q Consensus 255 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 291 (338)
+..|...+...+.+| +...|+++..+.+++.++.+..
T Consensus 363 f~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 363 FFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred cchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 5557777777777777666553
No 74
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.65 E-value=3.9e-15 Score=130.47 Aligned_cols=165 Identities=15% Similarity=-0.029 Sum_probs=117.4
Q ss_pred hhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy17628 116 SFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKL 195 (338)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (338)
.....+....+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++.++.
T Consensus 48 ~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~------ 121 (476)
T PLN00028 48 CFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV------ 121 (476)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh------
Confidence 33334556667788888899999999988888899999999999999999999999988887777776655543
Q ss_pred ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q psy17628 196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER--------- 266 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 266 (338)
.+....++...+.+++.+. ..+.. .+++|.+|++.|++++|+.+..+.+++.+++.+.+.+..
T Consensus 122 ------~s~~~l~~~r~l~G~~~~~-~~~~~-~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 193 (476)
T PLN00028 122 ------SSATGFIAVRFFIGFSLAT-FVSCQ-YWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPS 193 (476)
T ss_pred ------cCHHHHHHHHHHHHHHHHh-hHHHH-HHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 1122233334444444332 22333 467899999999999999988777777776665544322
Q ss_pred hcccceeehhhhHHHHHHHHHHHhhccC
Q psy17628 267 AFGTGVAFGTFAVYCIIGTFFVYFVVPE 294 (338)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (338)
..||++.|++.+++.++..++.+++.++
T Consensus 194 ~~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 194 FTAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 2479999988888777766555554433
No 75
>PRK12382 putative transporter; Provisional
Probab=99.65 E-value=1.2e-14 Score=124.85 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=111.9
Q ss_pred HHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (338)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (338)
....+.+.++++.|++ +.+.......++.+++.++.|++.||+|+|+.+..+..+.+++.+++...
T Consensus 234 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------------ 299 (392)
T PRK12382 234 VIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA------------ 299 (392)
T ss_pred HHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc------------
Confidence 4556667777776654 34555666777788899999999999999999888877777766544332
Q ss_pred hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHH
Q psy17628 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC 281 (338)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (338)
.+.+..+....+.+.+.+....... ..+.|.+|++.||++.|+.+....++..++|.+.+.+.+..||+..+.+.+++.
T Consensus 300 ~~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~ 378 (392)
T PRK12382 300 PTAWVALAGAALTGAGCSLIFPALG-VEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISA 378 (392)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHH-HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 1122333334444444443333333 567788999999999999999999999999999999999999988888888777
Q ss_pred HHHHHHHHhh
Q psy17628 282 IIGTFFVYFV 291 (338)
Q Consensus 282 ~~~~~~~~~~ 291 (338)
++..++.++.
T Consensus 379 ~~~~~~~~~~ 388 (392)
T PRK12382 379 VLGIIVTILS 388 (392)
T ss_pred HHHHHHHHhh
Confidence 7666555543
No 76
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.64 E-value=2.6e-15 Score=126.79 Aligned_cols=164 Identities=13% Similarity=-0.046 Sum_probs=123.7
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
+..+....|.+.++.|.+..+.++..+...++..+++++.|+++||+|||+++.........+.. ....
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~---------- 75 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLD---------- 75 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHH----------
Confidence 44566778888999999999999999999999999999999999999999876655443333221 1111
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV 279 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (338)
..+....++...+.+.+.+. ..+.. ..++|.+|+++|++++++......+|..+++.+.+.+.+..||+..|.+.++
T Consensus 76 -~~~~~~l~~~R~l~G~g~~~-~~~~~-~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~ 152 (368)
T TIGR00903 76 -PFNYEWLLACQLLAALGQPF-LLNAF-APAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAA 152 (368)
T ss_pred -hccHHHHHHHHHHHHhHhHH-HHHHH-HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 01223444455555555443 22222 4568999999999999999999999999999999999889999999988888
Q ss_pred HHHHHHHHHHhhccCCCC
Q psy17628 280 YCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~ 297 (338)
+.++..++.++++||+++
T Consensus 153 l~~~~~~~~~~~lp~~p~ 170 (368)
T TIGR00903 153 VAAAGIILVLAALPALPF 170 (368)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 888877777777888643
No 77
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.64 E-value=5.7e-16 Score=132.31 Aligned_cols=164 Identities=12% Similarity=0.074 Sum_probs=126.6
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+++...
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 80 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS---------- 80 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh----------
Confidence 4456667788888889999999999999999999999999999999999999999998888887776654
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHhcccceeehhhh
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK-TFDDVERAFGTGVAFGTFA 278 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 278 (338)
.+.+..++...+.+.+.+.... ...+++.|.+|+++|++++++.+....++..+++. +...+.+..+|+..+++.+
T Consensus 81 --~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (379)
T TIGR00881 81 --TSLWVMAALWALNGIFQGMGWP-PCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPG 157 (379)
T ss_pred --hhHHHHHHHHHHHHhhccccCC-chHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 1223344444455554444433 44478999999999999999999999999989884 5555666778988888777
Q ss_pred HHHHHHHHHHHhhccCCC
Q psy17628 279 VYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~ 296 (338)
.+.++..++.+++.+|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 158 IIAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHHHHheeeCCCc
Confidence 777666666666666654
No 78
>KOG1330|consensus
Probab=99.64 E-value=5.2e-16 Score=127.84 Aligned_cols=166 Identities=16% Similarity=0.072 Sum_probs=135.0
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
-+.+..-.+.+-+..|.+.+..+++.....++.+++++++|+++||+.|++++.+|..+..++.++.++.
T Consensus 49 r~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs---------- 118 (493)
T KOG1330|consen 49 RYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS---------- 118 (493)
T ss_pred hhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH----------
Confidence 4444445555556668899999999999999999999999999999999999999999999998888775
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cceeehhhh
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFA 278 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 278 (338)
...|.+.+...+.+.+-+.. .++...+++|.+|.++|++++++.++...+|+.++-.....+.+..+ ||+.|...+
T Consensus 119 --~~Fwq~~l~R~~vGiGeAs~-~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~a 195 (493)
T KOG1330|consen 119 --NHFWQVLLCRGFVGIGEASY-SPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSA 195 (493)
T ss_pred --HHHHHHHHHHHHhccchhhh-cccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeeh
Confidence 12345555566666665544 44444899999999999999999999999988777666666666666 999999999
Q ss_pred HHHHHHHHHHHhhccCCCCC
Q psy17628 279 VYCIIGTFFVYFVVPETKNK 298 (338)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~ 298 (338)
++.++++++..++.+|..++
T Consensus 196 vl~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 196 VLGVIVGLLVFLFVREPERG 215 (493)
T ss_pred HHHHHHHHHHHhhccCcccc
Confidence 99999999998888887654
No 79
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.63 E-value=4.2e-15 Score=131.06 Aligned_cols=138 Identities=9% Similarity=-0.079 Sum_probs=103.4
Q ss_pred hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
......+.|.++++. |+++.+++.......++..++.++.|++.||+|+|+.+..+.++.+++.+.+... ..
T Consensus 275 ~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~---~~---- 347 (495)
T PRK14995 275 LVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT---DF---- 347 (495)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh---cC----
Confidence 445667788888775 9999999999999999999999999999999999998888877776665544332 00
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA 267 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (338)
....+.......+.+.+.+....+.. ..+.+..|++.++.+.++.+....+|+.+++.+.+.+.+.
T Consensus 348 --~~~~~~~~~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 348 --STQQWQAWGLMALLGFSAASALLAST-SAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred --CCchHHHHHHHHHHHHhHHHHHHHHH-HHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01122333344555555554444444 5667788999999999999999999999999998887653
No 80
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.63 E-value=2.4e-14 Score=122.23 Aligned_cols=189 Identities=17% Similarity=0.157 Sum_probs=120.8
Q ss_pred HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCch
Q psy17628 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP 170 (338)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 170 (338)
+.++.+|+|..|...+ .++..+.++..+..+.|++.++. ++.........+..+...+..+++|+++||+|+|+
T Consensus 244 ~~~~vlk~~~~Wllsl-----ly~~tFG~fvg~s~~lp~~~~~~-~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~ 317 (462)
T PRK15034 244 DQLPVLQRLHLWLLSL-----LYLATFGSFIGFSAGFAMLAKTQ-FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR 317 (462)
T ss_pred HHHHHhCCCchhHHHH-----HHHHHHHHHHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH
Confidence 4556778775332222 22333334556677888887663 33333333344456778888899999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCc--------------
Q psy17628 171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP-------------- 236 (338)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------------- 236 (338)
++.++.+.+.++........ .... ..+.+.....+.......+.+.+.+. .++.+.+|+
T Consensus 318 vl~~~~i~~~i~~~~~~l~l--p~~~----~~~~~~~~~~~~~l~~~~G~gngsvf-k~ip~~f~~~~~~~~~~~~~~~~ 390 (462)
T PRK15034 318 VTLINFIFMAIFSALLFLTL--PGTG----SGNFIAFYAVFMGLFLTAGLGSGSTF-QMIAVIFRQITIYRVKMKGGSDE 390 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cccc----ccHHHHHHHHHHHHHHHhcccchHHH-HhhHHHHhhhhhhcccccccchh
Confidence 99988877777654433321 1000 01222333333333345555555554 677788874
Q ss_pred -------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ceeehhhhHHHHHHHHHHHhhc
Q psy17628 237 -------DVKGLALGVICILGSLIEFVVVKTFDDVERAFGT-GVAFGTFAVYCIIGTFFVYFVV 292 (338)
Q Consensus 237 -------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 292 (338)
++-|.+.|+....+.+|+++.|.+++...+.+|. ...++.+.+..+++.++.+++.
T Consensus 391 ~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 391 QAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 1457888899999999999999999988887764 3467777778888887777654
No 81
>PRK10504 putative transporter; Provisional
Probab=99.63 E-value=5.2e-15 Score=130.11 Aligned_cols=170 Identities=11% Similarity=0.010 Sum_probs=129.7
Q ss_pred HHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHH
Q psy17628 113 CFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYL 192 (338)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 192 (338)
.+......+....+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||++++.+..+.+++.+.+...
T Consensus 19 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--- 95 (471)
T PRK10504 19 FFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS--- 95 (471)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh---
Confidence 33344445567778999999999999998999999999999999999999999999999998877777776654432
Q ss_pred hhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccce
Q psy17628 193 LKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGV 272 (338)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (338)
.+.+..++...+.+.+.+... +....++.|.+|++.|+++.++.+....++..++|.+.+.+.+..+|++
T Consensus 96 ---------~~~~~l~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~ 165 (471)
T PRK10504 96 ---------GTLNELLLARVLQGVGGAMMV-PVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHW 165 (471)
T ss_pred ---------CCHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHH
Confidence 122333444555555444333 3344678899999999999999999999999999999999999999999
Q ss_pred eehhhhHHHHHHHHHHHhhccCC
Q psy17628 273 AFGTFAVYCIIGTFFVYFVVPET 295 (338)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~ 295 (338)
.|.+...+..+..+......|+.
T Consensus 166 ~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 166 IFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc
Confidence 88887766666665555555543
No 82
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.63 E-value=4.5e-15 Score=128.89 Aligned_cols=157 Identities=14% Similarity=0.060 Sum_probs=120.9
Q ss_pred HHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHH
Q psy17628 108 IVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALG 187 (338)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 187 (338)
...+................|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+.+..+++.+...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~ 101 (426)
T PRK12307 22 SAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSG 101 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 33333333334455566677777788899999999999999999999999999999999999999999998888877666
Q ss_pred HHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17628 188 YYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA 267 (338)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (338)
+. .+.+..++...+.+.+.+....... .++.|.+|++.|+++.++......+|..+++.+.+.+.+.
T Consensus 102 ~~------------~~~~~l~~~r~l~G~g~g~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~ 168 (426)
T PRK12307 102 LA------------SGVIMLTLSRFIVGMGMAGEYACAS-TYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA 168 (426)
T ss_pred HH------------hHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc
Confidence 54 1223444455555555444333333 6889999999999999999998899999999888888888
Q ss_pred cccceeehhh
Q psy17628 268 FGTGVAFGTF 277 (338)
Q Consensus 268 ~~~~~~~~~~ 277 (338)
.+|++.+++.
T Consensus 169 ~~w~~~f~i~ 178 (426)
T PRK12307 169 YGWRAAFFVG 178 (426)
T ss_pred CCHHHHHHHH
Confidence 8998887664
No 83
>PRK03699 putative transporter; Provisional
Probab=99.63 E-value=4.3e-15 Score=127.47 Aligned_cols=157 Identities=8% Similarity=-0.061 Sum_probs=110.0
Q ss_pred hHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
.+....|.|.++++ .|++..+.+...+...++..++.++.|+++||++||+.+.....+..+...++...
T Consensus 221 ~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~--------- 291 (394)
T PRK03699 221 QLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT--------- 291 (394)
T ss_pred HHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc---------
Confidence 45667889998865 49999999999999999999999999999999999998877665555443333221
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA 278 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
.+.........+.+++.+..+.... ++..|..|. .++...+.....+.+|..++|.+.+.+.+..|++..++..+
T Consensus 292 ---~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~ 366 (394)
T PRK03699 292 ---DDPSHLLYAILGLGFFSSAIYTTII-TLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTAN 366 (394)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhH
Confidence 1112222333333333332222222 455666653 46777888888899999999999999999999988888777
Q ss_pred HHHHHHHHHHHh
Q psy17628 279 VYCIIGTFFVYF 290 (338)
Q Consensus 279 ~~~~~~~~~~~~ 290 (338)
++..++.+.+..
T Consensus 367 ~~~~~~~~~~~~ 378 (394)
T PRK03699 367 GLYAVVFVMCIL 378 (394)
T ss_pred HHHHHHHHHHHH
Confidence 776666544433
No 84
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.63 E-value=1.4e-14 Score=125.17 Aligned_cols=163 Identities=18% Similarity=0.152 Sum_probs=121.8
Q ss_pred chHHHHHhhHHHHHhccCCCCCc-----chhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHh
Q psy17628 119 GINVVIFYLKRILIATNSKIISP-----NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLL 193 (338)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 193 (338)
+......+.|.+.++.|.+..+. +...+...+...++.++.|+++||+|||+.+..+....+++.+++...
T Consensus 29 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---- 104 (408)
T PRK09874 29 AFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA---- 104 (408)
T ss_pred HHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH----
Confidence 45566778888888888876553 677788889999999999999999999999998887777776655432
Q ss_pred hcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccee
Q psy17628 194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVA 273 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (338)
.+.+..++...+.+.+.+ ..+....++.|.+|+++|+++.++.+....++..+++.+.+.+.+..+|+..
T Consensus 105 --------~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 174 (408)
T PRK09874 105 --------QNIWQFLILRALLGLLGG--FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPV 174 (408)
T ss_pred --------hhHHHHHHHHHHHHHhhh--hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 112233333344443322 2233335778889999999999999999999999999999998888899988
Q ss_pred ehhhhHHHHHHHHHHHhhccCC
Q psy17628 274 FGTFAVYCIIGTFFVYFVVPET 295 (338)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~ 295 (338)
+++.+.+.++..+..+++.+|.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 175 FFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 8888777776666666666664
No 85
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.63 E-value=6.5e-15 Score=128.34 Aligned_cols=205 Identities=11% Similarity=0.022 Sum_probs=124.0
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
||+.+.+. +++.++..++.++.+||.++. .+.++ +++...+..++++
T Consensus 172 ~~~~~~i~---~~l~~~~~~~~~~~~~e~~~~----~~~~~--------------------------~~~~~~~~~~~~l 218 (437)
T TIGR00792 172 WFMFALVL---ALIGVVSLIICFFGTKERYSE----IPKNI--------------------------EKKLSLKQIFKAL 218 (437)
T ss_pred HHHHHHHH---HHHHHHHHHHHHcCCEecCCC----CCccc--------------------------ccCCCHHHHHHHH
Confidence 99999999 788877666677778886520 00000 0000112345566
Q ss_pred HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 174 (338)
++++..+...+ ..++.. .+......+.+++.+.. + +....+.......++.+++.++.++++||+|+|+.+..
T Consensus 219 ~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~ 292 (437)
T TIGR00792 219 FKNDQLLILCL-AYLFYN----LAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAG 292 (437)
T ss_pred hCCHHHHHHHH-HHHHHH----HHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 66653332221 111111 11223333344444433 3 34445566677788899999999999999999999988
Q ss_pred HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCC-------chhhhhHHHHHH
Q psy17628 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT-------PDVKGLALGVIC 247 (338)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~ 247 (338)
+..+.+++.+.+.+. ..+.+...+...+.+++.+... +..+++++|..| ++.+|++.|+.+
T Consensus 293 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 360 (437)
T TIGR00792 293 GILLMVLGYLIFFFA-----------GSNLPLILVLIILAGFGQNFVT-GLVWALVADTVDYGEWKTGVRAEGLVYSVRT 360 (437)
T ss_pred HHHHHHHHHHHHHHc-----------chhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhcCccchHHHHHHHH
Confidence 877777665544332 0111223333334444444333 333466777654 456799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Q psy17628 248 ILGSLIEFVVVKTFDDVERAFGTG 271 (338)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~ 271 (338)
....++..+++.+.+.+.+..|+.
T Consensus 361 ~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 361 FVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999998887764
No 86
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.63 E-value=5e-15 Score=127.56 Aligned_cols=164 Identities=13% Similarity=0.097 Sum_probs=126.0
Q ss_pred HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (338)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
.....-+|.+.++.|.+..+.++..+.+.++..++.++.|+++||+|||++++.+..+.+++.+.+...
T Consensus 33 ~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a----------- 101 (413)
T PRK15403 33 DLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT----------- 101 (413)
T ss_pred HhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-----------
Confidence 344445566677788898999999999999999999999999999999999999988888877666553
Q ss_pred hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHH
Q psy17628 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY 280 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (338)
.+.+..++...+.+.+.+. ..+..+.++.|.+|++.|++++++.+....++..++|.+.+.+.+..||++.|++.+++
T Consensus 102 -~~~~~l~~~r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~ 179 (413)
T PRK15403 102 -TSMTQFLIARFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVM 179 (413)
T ss_pred -CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 1223344444555444432 23333467889999999999999999999999999998888888888999999888877
Q ss_pred HHHHHHHHHhhccCCCC
Q psy17628 281 CIIGTFFVYFVVPETKN 297 (338)
Q Consensus 281 ~~~~~~~~~~~~~~~~~ 297 (338)
.++..+..++.+||+++
T Consensus 180 ~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 180 GLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHhCCCCcc
Confidence 77766555566787643
No 87
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.63 E-value=3.2e-15 Score=130.03 Aligned_cols=164 Identities=11% Similarity=0.045 Sum_probs=119.9
Q ss_pred HHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhh
Q psy17628 123 VIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG 202 (338)
Q Consensus 123 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (338)
.....|.+. +.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+........ ..
T Consensus 46 ~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 116 (438)
T TIGR00712 46 FALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA--------TS 116 (438)
T ss_pred HHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc--------cc
Confidence 344556554 469999999999999999999999999999999999999998888877776655432100 01
Q ss_pred hchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcccceeehhhhHHH
Q psy17628 203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER-AFGTGVAFGTFAVYC 281 (338)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (338)
+.....+...+.+.+.+..+.+.. ..+.|.+|+++|++++++.+....+++.+++.+.+...+ ..+|+..|++.+++.
T Consensus 117 ~~~~l~~~~~l~g~~~g~~~~~~~-~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~ 195 (438)
T TIGR00712 117 SIAIMFVLLFLNGWFQGMGWPPCG-RTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICA 195 (438)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHH-HHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 112223334444545444444444 677899999999999999999999999888887765444 468999888888887
Q ss_pred HHHHHHHHhhccCCC
Q psy17628 282 IIGTFFVYFVVPETK 296 (338)
Q Consensus 282 ~~~~~~~~~~~~~~~ 296 (338)
++..++.+++.||++
T Consensus 196 ~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 196 IIVALFAFAMMRDTP 210 (438)
T ss_pred HHHHHHHHHhccCCH
Confidence 777666666677653
No 88
>PRK10504 putative transporter; Provisional
Probab=99.62 E-value=1.2e-14 Score=127.75 Aligned_cols=141 Identities=13% Similarity=0.050 Sum_probs=101.9
Q ss_pred hHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
......+.|++++. .|.++.+.++......++..++.++.++++||+|||+++..+..+.++...++.... .
T Consensus 277 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~----- 349 (471)
T PRK10504 277 SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA--L----- 349 (471)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc--c-----
Confidence 44556677888875 588888888888888888888889999999999999999888777776655544320 0
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT 270 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (338)
....+.......+.+.+.+....+.. .+..+..|++.|++++++.++...++..+++.+.+.+.+..++
T Consensus 350 --~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 350 --LGWYYLLPFVLFLQGMVNSTRFSSMN-TLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred --cccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 01111122223333344444444444 6677889999999999999999999999999999988876665
No 89
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.62 E-value=9e-15 Score=126.10 Aligned_cols=165 Identities=13% Similarity=0.013 Sum_probs=124.7
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
...+....|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+....+++.+.....
T Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---------- 98 (406)
T PRK15402 29 NDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA---------- 98 (406)
T ss_pred hhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----------
Confidence 4455556677888889999999999999999999999999999999999999999888887777665543
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV 279 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (338)
.+.+..+....+.+.+.+.. .+.....+.|.+|++.|+++.++......++..++|.+.+.+.+..+|++.+++.++
T Consensus 99 --~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~ 175 (406)
T PRK15402 99 --QSIEQFTLLRFLQGIGLCFI-GAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAA 175 (406)
T ss_pred --ccHHHHHHHHHHHHhHhhhH-HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHH
Confidence 11223333334444333322 233346788999999999999988888888888999998888888899998888777
Q ss_pred HHHHHHHHHHhhccCCCC
Q psy17628 280 YCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~ 297 (338)
+.++..+..++..||+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 176 LAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHHhCCCCCc
Confidence 777766655566777643
No 90
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.62 E-value=4.6e-14 Score=120.89 Aligned_cols=149 Identities=9% Similarity=0.002 Sum_probs=94.3
Q ss_pred HHHh-hHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628 123 VIFY-LKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (338)
Q Consensus 123 ~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (338)
...+ .|.+.++.|++..+.+......+++.+++.++.+++.||.++ +.+..+..+..+....+... .
T Consensus 235 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~-----------~ 302 (394)
T PRK10213 235 FFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLTLW-----------G 302 (394)
T ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHH-----------h
Confidence 3444 466777779998888998999999999999999999999644 44333333333322222211 0
Q ss_pred hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHH
Q psy17628 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC 281 (338)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (338)
...+.......+.+.+.+....... +++.+..|+ .++...++......++..+++.+.|.+.+..|++..+...+.+.
T Consensus 303 ~~~~~~~~~~~l~G~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~ 380 (394)
T PRK10213 303 SDKIVATGVAIIWGLTFALVPVGWS-TWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLM 380 (394)
T ss_pred hhHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHH
Confidence 1123333344445545444433333 456676774 45666777777788899999999999999888766665554444
Q ss_pred HHHH
Q psy17628 282 IIGT 285 (338)
Q Consensus 282 ~~~~ 285 (338)
.+..
T Consensus 381 ~~~~ 384 (394)
T PRK10213 381 LLTA 384 (394)
T ss_pred HHHH
Confidence 4333
No 91
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.62 E-value=7.2e-15 Score=128.93 Aligned_cols=152 Identities=11% Similarity=-0.031 Sum_probs=117.6
Q ss_pred hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHH
Q psy17628 133 ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA 212 (338)
Q Consensus 133 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (338)
+.+++..+.+...+.+.++..++.++.|+++||+|||+.+..+.++.+++.++..... ....+..++...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~ 139 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA----------GGGIALVVFCRV 139 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH----------HcCchHHHHHHH
Confidence 4577888889999999999999999999999999999999998887777766543321 011233444455
Q ss_pred HHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccceeehhhhHHHHHHHHHHHhh
Q psy17628 213 IYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF-GTGVAFGTFAVYCIIGTFFVYFV 291 (338)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 291 (338)
+.+.+.+....... .+++|.+|++.|++++++......+|..+++.+.+.+.+.. +|+..|++.+++.++..++.+.+
T Consensus 140 ~~G~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 140 IQGLAQGSVSPATH-KIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred HHHHhcccchhhHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHH
Confidence 55555554444343 78999999999999999999999999999999999998884 99999998888777766555555
Q ss_pred ccCC
Q psy17628 292 VPET 295 (338)
Q Consensus 292 ~~~~ 295 (338)
.+|.
T Consensus 219 ~~~~ 222 (465)
T TIGR00894 219 PADD 222 (465)
T ss_pred hcCC
Confidence 5543
No 92
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.62 E-value=2.3e-15 Score=127.25 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=125.7
Q ss_pred hHHHHHhhH-HHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 120 INVVIFYLK-RILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 120 ~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
........| .+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.+...+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------- 82 (352)
T PF07690_consen 12 FSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--------- 82 (352)
T ss_dssp HHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh---------
Confidence 445556667 6667779999999999999999999999999999999999999999988888884444432
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA 278 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
.+.+..++...+.+.+.+....... .++.|.+|+++|++++++......++..+++.+.+.+.+..+|+..+++.+
T Consensus 83 ---~~~~~~~~~~~l~g~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~ 158 (352)
T PF07690_consen 83 ---SNFWLLLIARFLLGIGSGFFSPASN-ALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA 158 (352)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred ---hhHHHHhhhcccccccccccccccc-ccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence 1223445555555555544444444 789999999999999999999999999999999998888889999999888
Q ss_pred HHHHHHHHHHHhhccCC
Q psy17628 279 VYCIIGTFFVYFVVPET 295 (338)
Q Consensus 279 ~~~~~~~~~~~~~~~~~ 295 (338)
++.++..++...+.+++
T Consensus 159 ~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 159 ILSLIAAILFILFLPEP 175 (352)
T ss_dssp HHHHHHHHHHHCCC---
T ss_pred chhhhhhhhHhhhhhhc
Confidence 88888776544445443
No 93
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.61 E-value=2.2e-14 Score=122.94 Aligned_cols=200 Identities=15% Similarity=0.074 Sum_probs=121.8
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
||+.|++. +++.++..++.+++.||+++. ++.+ + .++...++++.
T Consensus 158 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~--------------~--------------~~~~~~~~~~~ 202 (385)
T TIGR00710 158 WHAIFAFL---SLAGILLSALIFFILPETLPY----EARI--------------Q--------------ISTYFETFLLL 202 (385)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHhCCCCCCC----cccC--------------C--------------HHHHHHHHHHH
Confidence 99999998 777776666666677876531 0000 0 00111234556
Q ss_pred HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 174 (338)
++++..+...+.... ..........+.|.+++ +.|.++.+.+.......++.+++.++.|++.||+|||+.+..
T Consensus 203 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 277 (385)
T TIGR00710 203 LKSKMFWGYALIYGA-----SFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRM 277 (385)
T ss_pred HcCchhHHHHHHHHH-----HHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 666543322221111 11123455666777766 458888888889999999999999999999999999999888
Q ss_pred HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHH
Q psy17628 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE 254 (338)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 254 (338)
+..+..++..++........ ...........+.+.+.+....... ....|..| +.|+++.++.+.....++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~-~~~g~~~~~~~~~~~~~g 348 (385)
T TIGR00710 278 GLILFAVSAVLLEITAILGL-------GSWAMIIGPMMFVGIGNSMISSIAM-AYALEDFP-HVAGTASALFGTLRLVLG 348 (385)
T ss_pred HHHHHHHHHHHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCc-ccchHHHHHHHHHHHHHH
Confidence 87776666555443311110 0111222223333333443333333 56677777 578999999988887777
Q ss_pred HHHHHHHHHH
Q psy17628 255 FVVVKTFDDV 264 (338)
Q Consensus 255 ~~~~~~~~~~ 264 (338)
.+.+.+.+..
T Consensus 349 ~i~~~~~~~~ 358 (385)
T TIGR00710 349 AIVGYLVSLI 358 (385)
T ss_pred HHHHHHHHhc
Confidence 7777766643
No 94
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.61 E-value=3.5e-14 Score=122.21 Aligned_cols=222 Identities=10% Similarity=-0.001 Sum_probs=121.8
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
||..|++. +++.++ ..+..+++||+++. +++.++ . +++.+.+++++
T Consensus 160 w~~~f~i~---a~~~l~-~~l~~~~~~e~~~~---~~~~~~-----------------~----------~~~~~~~~~~l 205 (402)
T PRK11902 160 WGNTYLLM---AGLMLA-GALTTLWAPEPEVP---ARPPRS-----------------L----------GEAVVGPLRDF 205 (402)
T ss_pred HHHHHHHH---HHHHHH-HHHHHHhcCCCccc---ccccch-----------------h----------HHHHHHHHHHH
Confidence 99999998 666655 33445667886531 000000 0 00112346677
Q ss_pred HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHH-HHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVG-FIQVIMTFFSSLLVDKAGRRPLLLI 174 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~grr~~~~~ 174 (338)
+++|..+...+...+...... .......+.+.++.|++..+.++.....+ ++.+++.++++++.||+|+|+.+..
T Consensus 206 ~~~~~~~~~l~~~~l~~~~~~----~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~ 281 (402)
T PRK11902 206 FSRRGAWALLLLIVLYKLGDA----FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLML 281 (402)
T ss_pred HhCcCHHHHHHHHHHHHhHHH----HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 887744332222222221111 11112233444557888888887775554 4688999999999999999998877
Q ss_pred HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHH----HHHhhcccccccceeeeeccCCchhhhhHHHHHHHHH
Q psy17628 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI----YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG 250 (338)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 250 (338)
+.....+..+.+....... .+.+.......+ .+...+... .....++.+.+|.+.+ ++.+...
T Consensus 282 ~~~~~~l~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~ 348 (402)
T PRK11902 282 FGVLQAVSNLGYWVLAVTP--------KHLWTMALAIGIENLCGGMGTAAFV-ALLMALCNRSFSATQY----ALLSALA 348 (402)
T ss_pred HHHHHHHHHHHHHHHHhcC--------CcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcHHHH----HHHHHHH
Confidence 6665555443332211110 011222222211 122222222 2223577777776654 4444445
Q ss_pred HHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHH
Q psy17628 251 SLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFV 288 (338)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (338)
.++..+++.+.+.+.+..||+..|.+.+.+++++.++.
T Consensus 349 ~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 349 SVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 56666566788899999999877777776666665444
No 95
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.61 E-value=1.9e-14 Score=122.40 Aligned_cols=166 Identities=17% Similarity=0.075 Sum_probs=117.6
Q ss_pred hcchHHHHHhhHH-HHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy17628 117 FSGINVVIFYLKR-ILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKL 195 (338)
Q Consensus 117 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (338)
+........+.|. +.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+++....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~----- 88 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV----- 88 (366)
T ss_pred HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh-----
Confidence 3345667778885 6677899999999999999999999999999999999999999999988888877766541
Q ss_pred ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q psy17628 196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER--------- 266 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 266 (338)
.+.+..++...+.+.+. ....+. ..+++|.+|+++|++++++......++..+++.+.+.+..
T Consensus 89 ------~~~~~~~~~~~~~g~~~-~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~ 160 (366)
T TIGR00886 89 ------QSYSVLLLLRLFIGIAG-GSFASC-MPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP 160 (366)
T ss_pred ------hhHHHHHHHHHHHHHhc-hhhHhH-HHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 01223333444444432 233333 3688999999999999999887777777777666655544
Q ss_pred -hcccceee-hhhhHHHHHHHHHHHhhccCC
Q psy17628 267 -AFGTGVAF-GTFAVYCIIGTFFVYFVVPET 295 (338)
Q Consensus 267 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 295 (338)
..+|++.+ ...+.+..+..++.+...+|+
T Consensus 161 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 161 AHLAWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 23788887 333444444444444445554
No 96
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.61 E-value=6.5e-15 Score=130.09 Aligned_cols=139 Identities=14% Similarity=0.038 Sum_probs=102.7
Q ss_pred hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
.+....+.|.++++. |+++.+.+.......++.+++.++.|++.||+|||+.+..+..+.+++...+..... .
T Consensus 271 ~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~---~--- 344 (485)
T TIGR00711 271 LYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT---P--- 344 (485)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC---C---
Confidence 445667888888775 889999999999999999999999999999999999988887777766655442100 0
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA 267 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (338)
....+.......+.+.+.+....+.. ....+..|++.|+++.|+.+....+++.+++.+.+.+.++
T Consensus 345 --~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 345 --DTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112233334444445444444444 4556778999999999999999999999999999887764
No 97
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.61 E-value=1.4e-14 Score=125.08 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=114.9
Q ss_pred chHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc-CCchHHHHHhHHHHHHHHHHHHHHHHhhcc
Q psy17628 119 GINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICIGALGYYFYLLKLD 196 (338)
Q Consensus 119 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (338)
.++....++|.++.+ .|++..+++...........++.+++|+++||+ |||+.++.+.++.+++.+++...
T Consensus 24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~------- 96 (493)
T PRK15462 24 SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS------- 96 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh-------
Confidence 366777888888765 599999999999999999999999999999999 99999999988888887655431
Q ss_pred cchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceee
Q psy17628 197 EKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD--VKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAF 274 (338)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (338)
........+...+...+.+....... ++++|.+|++ .|.++.++.+...++|+.++|.+.+.+.+..||+..|
T Consensus 97 ----~~~~~~~~l~l~li~iG~G~~~~~~~-alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F 171 (493)
T PRK15462 97 ----EIHPSFLYLSLAIIVCGYGLFKSNVS-CLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGF 171 (493)
T ss_pred ----hcchhHHHHHHHHHHHhcccccccHH-HHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHH
Confidence 00011122222223233333323333 7889999986 6999999999999999999999999999989999888
Q ss_pred hhhhHHHHHH
Q psy17628 275 GTFAVYCIIG 284 (338)
Q Consensus 275 ~~~~~~~~~~ 284 (338)
.+.++..+++
T Consensus 172 ~iaaigm~l~ 181 (493)
T PRK15462 172 GLAAVGMIAG 181 (493)
T ss_pred HHHHHHHHHH
Confidence 7755443333
No 98
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.60 E-value=3.1e-14 Score=121.66 Aligned_cols=173 Identities=13% Similarity=0.023 Sum_probs=112.9
Q ss_pred HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCch
Q psy17628 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP 170 (338)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 170 (338)
+++++++++..+...+..++... .......+.|.+.++.|.+..+.+.......++.++..++.+++.||+|+|+
T Consensus 197 ~~~~i~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 271 (382)
T PRK11128 197 AWKALLKEPTVWRFLLCVSLLQG-----SHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD 271 (382)
T ss_pred hHHHHHcChhHHHHHHHHHHHHH-----HhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 46777877644332222222221 1334555667777788888888888888888899999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHH-
Q psy17628 171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL- 249 (338)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~- 249 (338)
.+..+....+++.+..... ++.+..++...+.+.+.+....... .+..+. +++.+++.+++.+..
T Consensus 272 ~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~ 337 (382)
T PRK11128 272 LLLLSAICGVVRWGLMGST------------TALPWLIVIQILHCGTFTVCHLAAM-RYIAAR-PGSEVIRLQALYSALA 337 (382)
T ss_pred HHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHC-CHhhhHHHHHHHHHHH
Confidence 9888887777765544332 1223344445555555444333333 556665 555678888887644
Q ss_pred HHHHHHHHHHHHHHHHHhcccceeehhhhHHHHH
Q psy17628 250 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCII 283 (338)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (338)
..++..++|.+.|.+.+..|+ ..++..+++.++
T Consensus 338 ~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 338 MGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 455668899999999998876 344444444443
No 99
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.60 E-value=4.2e-14 Score=119.45 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=124.6
Q ss_pred hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCch-HHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy17628 120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP-LLLISDICMAICIGALGYYFYLLKLDE 197 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (338)
......+.|.+.++. |.+..+.+.......++..++.++.+++.||+|||+ .+..+..+..++.+.....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------- 262 (352)
T cd06174 191 YYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-------- 262 (352)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh--------
Confidence 556677888888776 888889999999999999999999999999999999 8888888887777666543
Q ss_pred chhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhh
Q psy17628 198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTF 277 (338)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (338)
.+.+.......+.+.+.+.... ....++.|..|++.|++.+|+.+....++..+++.+.+.+.+..+++..+.+.
T Consensus 263 ----~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~ 337 (352)
T cd06174 263 ----PSLALLLVALLLLGFGLGFAFP-ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLIL 337 (352)
T ss_pred ----ccHHHHHHHHHHHHHHHhccch-hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHH
Confidence 1123334445555555554444 44489999999999999999999999999999999999999888998888888
Q ss_pred hHHHHHHHHHH
Q psy17628 278 AVYCIIGTFFV 288 (338)
Q Consensus 278 ~~~~~~~~~~~ 288 (338)
+++.+++.++.
T Consensus 338 ~~~~~i~~i~~ 348 (352)
T cd06174 338 AALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHh
Confidence 77777766544
No 100
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.60 E-value=2.1e-14 Score=123.35 Aligned_cols=165 Identities=15% Similarity=0.070 Sum_probs=122.2
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 24 ~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~---------- 93 (394)
T PRK11652 24 QTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA---------- 93 (394)
T ss_pred HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH----------
Confidence 3344455788888889999999999999999999999999999999999999999888777776655442
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV 279 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (338)
.+.+..++...+.+.+.+.. .+....+..|.++.+.|+.+.++.+....++..++|.+.+.+.+..+|+..+++.++
T Consensus 94 --~~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~ 170 (394)
T PRK11652 94 --HSLTVLIAASAIQGLGTGVG-GVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLL 170 (394)
T ss_pred --ccHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 11223333334444333322 223335667888888999999998888888888999998888888899988888777
Q ss_pred HHHHHHHHHHhhccCCCC
Q psy17628 280 YCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~ 297 (338)
+.++..++..++.||+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 171 LGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHHHHHhCCccCc
Confidence 666655555556777543
No 101
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.59 E-value=3.3e-14 Score=121.47 Aligned_cols=208 Identities=16% Similarity=0.108 Sum_probs=115.3
Q ss_pred echhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHH
Q psy17628 4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE 77 (338)
Q Consensus 4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 77 (338)
+|..+++.++.. ||+.|++. +++.++..++..+++||+++. +++ ++.+.
T Consensus 126 ~g~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~-------------~~~~~------ 180 (377)
T PRK11102 126 IAPLLAPIIGGWLLVWFSWHAIFWVL---ALAAILAAALVFFFIPETLPK---ERR-------------QPFHL------ 180 (377)
T ss_pred HHHHHHHHHHHHHHHHcChHHHHHHH---HHHHHHHHHHHHHhCCccCcc---ccc-------------CCCCh------
Confidence 344455544433 99999998 777777666666778886420 000 00000
Q ss_pred HHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHH
Q psy17628 78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMT 156 (338)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 156 (338)
++...++++.++++..+.. .+.....+.+......+.|.++.+ .|++..+.+.......++.+++.
T Consensus 181 --------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~ 247 (377)
T PRK11102 181 --------RTTIRNFASLFRHKRVLGY-----MLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMT 247 (377)
T ss_pred --------HHHHHHHHHHHcChHHHHH-----HHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 0011234556666532211 111112222244455566665555 58898899999999999999999
Q ss_pred HHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCc
Q psy17628 157 FFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP 236 (338)
Q Consensus 157 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 236 (338)
++.|++.||+|||+.+..+..+..+..+.+...... +...+...+...++..+.+....... .++.|..|
T Consensus 248 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 317 (377)
T PRK11102 248 IINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL--------DLGFWALVVGVAAFVGCVSMISSNAM-AVILDEFP- 317 (377)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHhhHHHH-HHHhcccc-
Confidence 999999999999999888776554433322221110 00112222222222222222222222 45667766
Q ss_pred hhhhhHHHHHHHHHH-HHHHHHHH
Q psy17628 237 DVKGLALGVICILGS-LIEFVVVK 259 (338)
Q Consensus 237 ~~r~~~~~~~~~~~~-~~~~~~~~ 259 (338)
+.|+++.++.+.... ++..+++.
T Consensus 318 ~~~g~~~~~~~~~~~~~g~~~g~~ 341 (377)
T PRK11102 318 HMAGTASSLAGTLRFGIGAIVGAL 341 (377)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Confidence 788999998776644 34444443
No 102
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.59 E-value=1.7e-14 Score=122.57 Aligned_cols=161 Identities=14% Similarity=0.039 Sum_probs=122.2
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
........|.+..+.+.+..+.++..+...++..++.++.|+++||+|||+++..+..+..++.++........
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~------ 88 (365)
T TIGR00900 15 TAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG------ 88 (365)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC------
Confidence 44555667778888888889999999999999999999999999999999999998887777766655542110
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV 279 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (338)
..+.+..++...+.+.+.+...... .+++.|.+|+++|++++++.+....++..+++.+.+.+.+..+|+..+++.++
T Consensus 89 -~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~ 166 (365)
T TIGR00900 89 -GLNIWQVYVLAGILAIAQAFFTPAY-QAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAV 166 (365)
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 0122334444555555544443333 37899999999999999999999999999999999999898999988877666
Q ss_pred HHHHHHHHH
Q psy17628 280 YCIIGTFFV 288 (338)
Q Consensus 280 ~~~~~~~~~ 288 (338)
..++..++.
T Consensus 167 ~~~~~~~~~ 175 (365)
T TIGR00900 167 GFAISALLI 175 (365)
T ss_pred HHHHHHHHH
Confidence 555544333
No 103
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.59 E-value=1.3e-13 Score=117.73 Aligned_cols=148 Identities=10% Similarity=-0.056 Sum_probs=107.0
Q ss_pred HHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (338)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (338)
....+.|.+.++.|.+..+.+.......++.+++.++.|++.||+|+|+.+..+.....++...+...
T Consensus 218 ~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~------------ 285 (381)
T PRK03633 218 SLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQ------------ 285 (381)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhh------------
Confidence 44567888888888888888888888899999999999999999999999888777666655433210
Q ss_pred hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHH
Q psy17628 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC 281 (338)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (338)
........+.+.+.. ...+...+.+.|..|++.++...+..+....+|..++|.+.+.+.+++++...|.+.+.+.
T Consensus 286 ---~~~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~ 361 (381)
T PRK03633 286 ---AAMAPALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVS 361 (381)
T ss_pred ---HHHHHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 011112222222222 2233343667888888888878888888888999999999999999999877777766666
Q ss_pred HHHH
Q psy17628 282 IIGT 285 (338)
Q Consensus 282 ~~~~ 285 (338)
++..
T Consensus 362 l~~~ 365 (381)
T PRK03633 362 FIYL 365 (381)
T ss_pred HHHH
Confidence 5444
No 104
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.59 E-value=1.1e-14 Score=124.46 Aligned_cols=163 Identities=15% Similarity=0.110 Sum_probs=127.8
Q ss_pred HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (338)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
.......|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++...+...
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~----------- 76 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA----------- 76 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 345567788888889999999999999999999999999999999999999999988888887766553
Q ss_pred hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHH
Q psy17628 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY 280 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (338)
.+.+...+...+.+.+.+...... .+++.|.+|++.|++++++.+....++..+++.+.+.+.+..+|+..+++.+.+
T Consensus 77 -~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 154 (377)
T PRK11102 77 -QTIDQLIYMRFLHGLAAAAASVVI-NALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALA 154 (377)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 112233344444444444333333 378899999999999999999999999999999999998888998888887777
Q ss_pred HHHHHHHHHhhccCCC
Q psy17628 281 CIIGTFFVYFVVPETK 296 (338)
Q Consensus 281 ~~~~~~~~~~~~~~~~ 296 (338)
.++..++..+..||++
T Consensus 155 ~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 155 AILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHhCCccC
Confidence 7776666666677653
No 105
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.59 E-value=1.8e-14 Score=125.67 Aligned_cols=158 Identities=14% Similarity=0.117 Sum_probs=119.0
Q ss_pred HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (338)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
.....+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||++++.+.++..++.+++++..
T Consensus 36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---------- 105 (455)
T TIGR00892 36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS---------- 105 (455)
T ss_pred cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh----------
Confidence 3456678888888999999999999999888999999999999999999999998888887776665531
Q ss_pred hhhchHHHHHH-HHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628 201 DGLGLLPVASL-AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV 279 (338)
Q Consensus 201 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (338)
+.+..+... .+.+.+.+....+.. .++.+.+| +.|+++.++.+....++..+++.+.+.+.+..||++.|++.++
T Consensus 106 --~~~~l~~~~~~l~G~~~~~~~~~~~-~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~ 181 (455)
T TIGR00892 106 --NVIELYLTAGFITGLGLAFNFQPSL-TMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGG 181 (455)
T ss_pred --hHHHHHHHHHHHHHhcchhhhhHHH-HHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 111222222 333444433333333 56678886 7899999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHhhc
Q psy17628 280 YCIIGTFFVYFVV 292 (338)
Q Consensus 280 ~~~~~~~~~~~~~ 292 (338)
+.++..+..++..
T Consensus 182 ~~~~~~v~~~~~~ 194 (455)
T TIGR00892 182 LLLHCCVCGALMR 194 (455)
T ss_pred HHHHHHHHHHHhC
Confidence 7766654444433
No 106
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.59 E-value=5.2e-14 Score=124.52 Aligned_cols=153 Identities=14% Similarity=0.032 Sum_probs=107.6
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHH
Q psy17628 137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII 216 (338)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (338)
+..+.++..+...++.+++.++.|+++||+|||+.+..+.++..++.++.+..... .. .......++...+.++
T Consensus 54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~--~~----~~~~~~~~~~r~l~G~ 127 (502)
T TIGR00887 54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGS--SP----KSVMATLCFWRFWLGV 127 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCc--cc----chHHHHHHHHHHHHHH
Confidence 33455778888999999999999999999999999999888888877665543100 00 0012345555666666
Q ss_pred hhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hccccee
Q psy17628 217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER-----------------------AFGTGVA 273 (338)
Q Consensus 217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~ 273 (338)
+.+....... .+++|.+|++.|++++++.+....+|..+++.+...+.. ..+||..
T Consensus 128 ~~g~~~~~~~-~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~ 206 (502)
T TIGR00887 128 GIGGDYPLSA-IITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRIL 206 (502)
T ss_pred HHhhhhHHHH-HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHH
Confidence 6665555555 899999999999999999998888888777766554322 1368877
Q ss_pred ehhhhHHHHHHHHHHHhhccCCCC
Q psy17628 274 FGTFAVYCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
+.+.++.+ +..++..+++||+.+
T Consensus 207 ~~~~~ip~-~i~~~~~~~lpESpr 229 (502)
T TIGR00887 207 IGFGAVPA-LLALYFRLTIPETPR 229 (502)
T ss_pred HHHHHHHH-HHHHHHHHhCCCCHH
Confidence 75544433 444455567899844
No 107
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.58 E-value=4.8e-14 Score=121.05 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=78.7
Q ss_pred HHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628 123 VIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (338)
Q Consensus 123 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (338)
...+.|.+.. +.|++..+.+......+++.+++.++.+++.||+|||+.+..+..+..++.+.+....
T Consensus 222 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~----------- 290 (392)
T PRK10473 222 FVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP----------- 290 (392)
T ss_pred HHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 3445565554 4588888888888889999999999999999999999999888877776665554431
Q ss_pred hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccce
Q psy17628 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGV 272 (338)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (338)
..........+...+.+.+... ....+..|.+.|+ +..+....++..+++.+.+.+.+..|+..
T Consensus 291 -~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~ 354 (392)
T PRK10473 291 -SHAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISA 354 (392)
T ss_pred -HHHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 1111222222222233322222 1223344544443 23333344555556666666666667643
No 108
>PRK03699 putative transporter; Provisional
Probab=99.58 E-value=5.7e-14 Score=120.53 Aligned_cols=155 Identities=10% Similarity=0.027 Sum_probs=118.8
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.++..+.
T Consensus 23 ~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~---------- 92 (394)
T PRK03699 23 VIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS---------- 92 (394)
T ss_pred HHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc----------
Confidence 4456677888888889999999999999999999999999999999999999998888887777666543
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcccceeehhhh
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER-AFGTGVAFGTFA 278 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (338)
++.+..++...+.+.+.+....... .++.|.+|++.|+.+++..+....+++.++|.+.+.+.+ ..+|++.+.+.+
T Consensus 93 --~~~~~~~~~~~l~G~~~g~~~~~~~-~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~ 169 (394)
T PRK03699 93 --HSLALFSIAMFVLGVVSGITMSIGT-FLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIG 169 (394)
T ss_pred --chHHHHHHHHHHHHHhhHhhccchh-HHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 1223334444555555554444333 678999999999999998888888888888888887765 468998888777
Q ss_pred HHHHHHHHH
Q psy17628 279 VYCIIGTFF 287 (338)
Q Consensus 279 ~~~~~~~~~ 287 (338)
++.++..++
T Consensus 170 ~~~~~~~~~ 178 (394)
T PRK03699 170 LVYVAIFIL 178 (394)
T ss_pred HHHHHHHHH
Confidence 666555433
No 109
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.58 E-value=5e-14 Score=115.23 Aligned_cols=180 Identities=16% Similarity=0.098 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHH
Q psy17628 104 ATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI 183 (338)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 183 (338)
+.+......+...++.++......+.+-++.|+|+.|.+++..+..+...+..++.|++.||+|.|+....+.++..+-+
T Consensus 14 ~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~ 93 (417)
T COG2223 14 RNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPC 93 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHH
Confidence 34444444454555556666666777778889999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 184 GALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDD 263 (338)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 263 (338)
+..++... ..+++.++...++.+..+..+.... .++++.||++++|+++|+.. .+++|..+...+.+.
T Consensus 94 ~~~~~a~~----------~~~~~~ll~~gll~G~~GasFav~m-~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~ 161 (417)
T COG2223 94 LGLAFAVT----------YPSTWQLLVIGLLLGLAGASFAVGM-PNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPL 161 (417)
T ss_pred HHHHHHcc----------CCchHHHHHHHHHHhcccceehccc-ccccccCChhhhhHHHHHhc-cccccHHHHHHHHHH
Confidence 77776511 1111223333333323333333333 78999999999999999988 999999999999999
Q ss_pred HHHhcc---cceeehhhhHHHHHHHHHHHhhccCC
Q psy17628 264 VERAFG---TGVAFGTFAVYCIIGTFFVYFVVPET 295 (338)
Q Consensus 264 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (338)
+....+ |+....++....++..+..++.+.+.
T Consensus 162 v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~ 196 (417)
T COG2223 162 VAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDV 196 (417)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 988888 88888888887777777777766543
No 110
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.58 E-value=5.1e-14 Score=124.22 Aligned_cols=160 Identities=14% Similarity=0.029 Sum_probs=110.2
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHH
Q psy17628 135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIY 214 (338)
Q Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (338)
+.+..+.++..+...++..+++++.|+++||+|||++++.+..+..++.+..++...................++...+.
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~ 130 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIG 130 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHH
Confidence 66778889999999999999999999999999999999999888877766555421100000000001112334445555
Q ss_pred HHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HhcccceeehhhhHHHHHHHH
Q psy17628 215 IIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE--------RAFGTGVAFGTFAVYCIIGTF 286 (338)
Q Consensus 215 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 286 (338)
+++.+....... ++++|.+|+++|+.++++......+|..+++.+...+. +..+|++.|++.++..++..
T Consensus 131 G~~~g~~~~~~~-~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~- 208 (479)
T PRK10077 131 GIGVGLASMLSP-MYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL- 208 (479)
T ss_pred hhhHhHHhhHHH-HHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH-
Confidence 555554444444 78999999999999999988888888777665443332 35689888887666665554
Q ss_pred HHHhhccCCC
Q psy17628 287 FVYFVVPETK 296 (338)
Q Consensus 287 ~~~~~~~~~~ 296 (338)
+..+++||+.
T Consensus 209 ~~~~~l~~s~ 218 (479)
T PRK10077 209 MLLYFVPETP 218 (479)
T ss_pred HHHHcCCCCc
Confidence 3455678875
No 111
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.58 E-value=3.5e-15 Score=127.31 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=122.6
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
.+....+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.+......
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~--------- 89 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD--------- 89 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHH---------
Confidence 34556678888888999999999999999999999999999999999999999999888888877666541
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV 279 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (338)
+.+..++...+.+.+.+..+.... ..+.|.+| ++|+++.++......++..+++++.+.+.+..+|++.+.+.++
T Consensus 90 ---~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~ 164 (377)
T TIGR00890 90 ---SLAALYLTYGLASAGVGIAYGIAL-NTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGI 164 (377)
T ss_pred ---HHHHHHHHHHHHhHHHHHHHHhHH-HHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHH
Confidence 222333444444444443333333 45677777 5699999999888888888777777777788889998888888
Q ss_pred HHHHHHHHHHhhccC
Q psy17628 280 YCIIGTFFVYFVVPE 294 (338)
Q Consensus 280 ~~~~~~~~~~~~~~~ 294 (338)
+.++..+..+++.++
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (377)
T TIGR00890 165 IFLLVIVLGAFLIGY 179 (377)
T ss_pred HHHHHHHHHHHheec
Confidence 777776666665554
No 112
>PRK11043 putative transporter; Provisional
Probab=99.57 E-value=1.7e-13 Score=118.09 Aligned_cols=137 Identities=10% Similarity=-0.058 Sum_probs=90.4
Q ss_pred HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (338)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
.....+.|.+.++.|++..+.+.......++.+++.++.+++.||+++|+.........+++.+.+........
T Consensus 220 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 293 (401)
T PRK11043 220 FAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSH------ 293 (401)
T ss_pred HHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 34556778888888888888888777888888999999999999999998776665555554443322211110
Q ss_pred hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER 266 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (338)
...+..+....+.+.+.+....... ....|..| +.||+++|+.+..+..++..++.+.+.+.+
T Consensus 294 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 294 -PSLVPLLIPFCVMAAANGAIYPIVV-AQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 0112222233333444433333322 45556666 579999999999988888888888887765
No 113
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.57 E-value=6.6e-14 Score=121.17 Aligned_cols=167 Identities=13% Similarity=0.027 Sum_probs=120.2
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
........|.+.++.+.+..+.++..+...++..+++++.|+++||+|||+++..+..+.+++...+........
T Consensus 33 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~----- 107 (417)
T PRK10489 33 LGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPE----- 107 (417)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCC-----
Confidence 445667788888888778889999999999999999999999999999999998887777666555433211100
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV 279 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (338)
...+..++...+.+.+.+....+.. .++.|.+|+++|+++.++.+....++..+++.+.+.+.+..+|++.+.+.++
T Consensus 108 --~~~~~l~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~ 184 (417)
T PRK10489 108 --PSLLAIYLLGLWDGFFGSLGVTALL-AATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAA 184 (417)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHHHh-hhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1112333333344444443333333 6788999999999999999999999999999999998888888888776655
Q ss_pred HHHHHHHHHHhhccCC
Q psy17628 280 YCIIGTFFVYFVVPET 295 (338)
Q Consensus 280 ~~~~~~~~~~~~~~~~ 295 (338)
..++.. +..+.+|++
T Consensus 185 ~~~~~~-~~~~~l~~~ 199 (417)
T PRK10489 185 GTFITL-LPLLRLPAL 199 (417)
T ss_pred HHHHHH-HHHHhCCCC
Confidence 554444 334446654
No 114
>PRK11043 putative transporter; Provisional
Probab=99.57 E-value=6.2e-14 Score=120.72 Aligned_cols=160 Identities=11% Similarity=0.019 Sum_probs=117.4
Q ss_pred HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (338)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
+......|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 23 ~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------- 91 (401)
T PRK11043 23 DMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV----------- 91 (401)
T ss_pred HHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-----------
Confidence 344444555677789999999999999999999999999999999999999998888777776655543
Q ss_pred hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHH
Q psy17628 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY 280 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (338)
.+.+..++...+.+.+.+... +....++.|.+|++.++...+..+....++..++|.+.+.+.+..+|+..+++.+.+
T Consensus 92 -~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~ 169 (401)
T PRK11043 92 -ESAAQLLVLRFVQAVGVCSAA-VIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAI 169 (401)
T ss_pred -cCHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 112233333334333333222 222257789999998888888888888889999999999998989999888877777
Q ss_pred HHHHHHHHHhhccC
Q psy17628 281 CIIGTFFVYFVVPE 294 (338)
Q Consensus 281 ~~~~~~~~~~~~~~ 294 (338)
.++..+..++ .+|
T Consensus 170 ~~~~~~~~~~-~~~ 182 (401)
T PRK11043 170 TLLLILPTLR-LKP 182 (401)
T ss_pred HHHHHHHHHH-cCC
Confidence 6666554444 444
No 115
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.57 E-value=7.8e-14 Score=115.00 Aligned_cols=141 Identities=11% Similarity=-0.002 Sum_probs=100.4
Q ss_pred hHHHHHhhHHHHHh---ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcc
Q psy17628 120 INVVIFYLKRILIA---TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD 196 (338)
Q Consensus 120 ~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (338)
-.....|.+.++.+ .|+++.+.+...+....+.++|.++.+++.||+|+|+.+..+..+..++.++....
T Consensus 156 e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~------- 228 (310)
T TIGR01272 156 EVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT------- 228 (310)
T ss_pred HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-------
Confidence 44667788888865 38888999999999999999999999999999999998887776666655333221
Q ss_pred cchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehh
Q psy17628 197 EKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGT 276 (338)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (338)
+.........+.+++.+..+.... +...+.+|++ .+++.++. ..+.+|+.+.|.+.|.+.|..|.+.++++
T Consensus 229 ------~~~~~~~~~~l~g~~~s~i~P~~~-s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v 299 (310)
T TIGR01272 229 ------HGYVAMWFVLALGLFNSIMFPTIF-SLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFAL 299 (310)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHH
Confidence 111122333445555555544444 5666767754 45666664 56778999999999999998887666653
No 116
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.56 E-value=3.7e-14 Score=125.60 Aligned_cols=156 Identities=13% Similarity=0.035 Sum_probs=119.5
Q ss_pred HHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHH
Q psy17628 109 VGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGY 188 (338)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 188 (338)
..+..+.............|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+.+.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 104 (496)
T PRK03893 25 AWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGF 104 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334556666778888888999999999999999999999999999999999999999998888887776665
Q ss_pred HHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17628 189 YFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF 268 (338)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (338)
. .+.+..++...+.+.+.+....... .++.|.+|++.|+.++++......++..+++.+.+.+.+..
T Consensus 105 ~------------~~~~~l~~~~~l~G~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 171 (496)
T PRK03893 105 A------------PGYWTLFIARLVIGMGMAGEYGSSA-TYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW 171 (496)
T ss_pred H------------hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3 1223334444444444443333333 68899999999999999999999999999999999998888
Q ss_pred ccceeehhh
Q psy17628 269 GTGVAFGTF 277 (338)
Q Consensus 269 ~~~~~~~~~ 277 (338)
+|++.+.+.
T Consensus 172 ~w~~~f~~~ 180 (496)
T PRK03893 172 GWRALFFIG 180 (496)
T ss_pred CHHHHHHHH
Confidence 998877653
No 117
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.56 E-value=5.9e-14 Score=120.44 Aligned_cols=162 Identities=14% Similarity=0.115 Sum_probs=121.8
Q ss_pred hHHHHHhhHHHH-HhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 120 INVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 120 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
.+....+.+.++ ++.|.+..+.++..+...+...+..++.|+++||+|||+++..+..+.+++.+.+...
T Consensus 26 ~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--------- 96 (400)
T PRK11646 26 FFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA--------- 96 (400)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh---------
Confidence 445566666655 5669999999999999999999999999999999999999999988888887766543
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA 278 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
++.+..++...+.+.+.+.. .+...+++.|.+|++.|++++|+.+....++..++|.+.+.+. ..+|++.|++.+
T Consensus 97 ---~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~ 171 (400)
T PRK11646 97 ---HEPWLLWLSCILSGLGGTLF-DPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGA 171 (400)
T ss_pred ---ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 12233344444444443322 2333367889999999999999999999999999999999887 678988888777
Q ss_pred HHHHHHHHHHHhhccCC
Q psy17628 279 VYCIIGTFFVYFVVPET 295 (338)
Q Consensus 279 ~~~~~~~~~~~~~~~~~ 295 (338)
.+.++..++..+..||.
T Consensus 172 ~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 172 VLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 66666555545555653
No 118
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.56 E-value=6.7e-13 Score=114.88 Aligned_cols=183 Identities=17% Similarity=0.135 Sum_probs=125.1
Q ss_pred HHHHHHhhhcchHHHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCc--hHHHHHhHHHHHHHHH
Q psy17628 109 VGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR--PLLLISDICMAICIGA 185 (338)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~~ 185 (338)
+++..+...-+...+......+.+ +.|++..+......+..+.+++|++++|++.||+|.| ++++++..+..+..+.
T Consensus 286 fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~ 365 (477)
T PF11700_consen 286 FLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLY 365 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 344444444456666677777766 4599999999999999999999999999999999999 7777766555333322
Q ss_pred HHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 186 LGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE 265 (338)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (338)
-.+-...... ...+.+.+.+...+.+.+.+. ..+...++.+|+.|+++.+..+|+....+...+.++|.+.+.+.
T Consensus 366 g~~G~~~~~~----g~~~~~~f~~~a~~~G~~~G~-~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~ 440 (477)
T PF11700_consen 366 GLFGFWPSFF----GLKSPWEFWVLAVLIGLFMGG-IQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLIT 440 (477)
T ss_pred HHHHhhhccc----CcccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2210111100 012334445555555555543 34445589999999999999999999999999999999999999
Q ss_pred Hhcc-cceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628 266 RAFG-TGVAFGTFAVYCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 266 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
+.+| .|..+....++.+++.++. +.++..++
T Consensus 441 ~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g 472 (477)
T PF11700_consen 441 DATGSQRYGFLFLLVLFLIGLILL-FFVDVEKG 472 (477)
T ss_pred HHhCCchhHHHHHHHHHHHHHHHH-hhccchhh
Confidence 9887 5556665555555555444 43544433
No 119
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.56 E-value=4.3e-14 Score=121.59 Aligned_cols=166 Identities=13% Similarity=0.010 Sum_probs=111.3
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
.+....+.+.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.+++......
T Consensus 29 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~------- 101 (402)
T TIGR00897 29 DGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLG------- 101 (402)
T ss_pred hhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 4445567788888889999999999999999999999999999999999999999988887776544221000
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhcccceeehhhh
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE-FVVVKTFDDVERAFGTGVAFGTFA 278 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
..+.+..++...+.+.+.+....... ..+.+.+|+++|++++|+.+....++. .+++.+.+.+.+..|++..++...
T Consensus 102 -~~~~~~l~~~~~i~G~g~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~ 179 (402)
T TIGR00897 102 -HANYPLILLFYGIRGLGYPLFAYSFL-VWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSAL 179 (402)
T ss_pred -CccHHHHHHHHHHHHcchHHHHhHHH-HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 01122223333333333332222222 466788899999999999998888886 467777777777777655444433
Q ss_pred HHHHHHHHHHHhhccC
Q psy17628 279 VYCIIGTFFVYFVVPE 294 (338)
Q Consensus 279 ~~~~~~~~~~~~~~~~ 294 (338)
....+..++..++.++
T Consensus 180 ~~~~~~~~~~~~~~~~ 195 (402)
T TIGR00897 180 AFVLTGGVIALFSNKD 195 (402)
T ss_pred HHHHHHHHHHHhccCC
Confidence 3333333333343443
No 120
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.56 E-value=1.8e-14 Score=126.37 Aligned_cols=166 Identities=13% Similarity=-0.099 Sum_probs=122.3
Q ss_pred HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (338)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
..+....|.+.++.|.+..+.++..+.+.++..++.++.|+++||+|||+++..+.++.++..+.++......
T Consensus 46 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~------- 118 (467)
T PRK09556 46 KNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSG------- 118 (467)
T ss_pred cChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 3455667888899999999999999999999999999999999999999999988888777776655431111
Q ss_pred hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccceeehhh
Q psy17628 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF---GTGVAFGTF 277 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 277 (338)
..+.+..++...+.+.+.+.+..... .+++|.+|+++||+++|+......+|..+++.+.....+.. +|+..|.+.
T Consensus 119 ~~~~~~l~~~r~l~G~~~~~~~~~~~-~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~ 197 (467)
T PRK09556 119 SVSLGLMIALWALSGFFQSTGGPCSY-STITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFP 197 (467)
T ss_pred cchHHHHHHHHHHHHHHHhccchHHH-HHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHH
Confidence 11233444555556665555554444 78999999999999999999888888888888776655543 466666666
Q ss_pred hHHHHHHHHHHHhhccC
Q psy17628 278 AVYCIIGTFFVYFVVPE 294 (338)
Q Consensus 278 ~~~~~~~~~~~~~~~~~ 294 (338)
+++.++..++.+++.++
T Consensus 198 g~~~~~~~i~~~~~~~~ 214 (467)
T PRK09556 198 SIIALIIGFIGLRYGSD 214 (467)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 66666655555555544
No 121
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.56 E-value=2.2e-13 Score=116.95 Aligned_cols=134 Identities=8% Similarity=-0.016 Sum_probs=88.4
Q ss_pred HHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhh-hcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628 123 VIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD-KAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (338)
Q Consensus 123 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (338)
...+.|.+.++.+.++.+.+.......++...+....+++.| |++.++.+..+..+.+++..++...
T Consensus 227 ~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~------------ 294 (400)
T PRK11646 227 VMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV------------ 294 (400)
T ss_pred HHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh------------
Confidence 345778888887556677777777777666665555555555 5666666666666666655544332
Q ss_pred hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17628 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG 269 (338)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (338)
+..+.......+++.+.+....... +++.|..|++.||+++|+.+....++..++|.+.+.+.+..+
T Consensus 295 ~~~~~~~~~~~l~~~g~~~~~p~~~-~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 295 SNLQQLFTLICLFYIGSIIAEPARE-TLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccHH-HHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 0112222223333333333333333 678899999999999999999999999999999999988753
No 122
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.55 E-value=1.9e-13 Score=116.73 Aligned_cols=184 Identities=15% Similarity=0.006 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHH
Q psy17628 103 KATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 181 (338)
++.+....+.+...+...+......+.+.+ +.|++..|.++..++..+...++.++.|++.||+|.|+++.++.++..+
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i 112 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII 112 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 445555555566666556666666666655 6899999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q psy17628 182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTF 261 (338)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 261 (338)
..+..++..... .++.+..++...+.+.+ +..+.+.. ..+++.+|+++||+++|+....+++|..+.+.+.
T Consensus 113 ~~~~~~~a~~~~-------~~s~~~lli~r~l~Gig-g~~f~~~~-~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~ 183 (462)
T PRK15034 113 PCVWLGIAVQNP-------NTPFGIFIVIALLCGFA-GANFASSM-GNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA 183 (462)
T ss_pred HHHHHHHHHccc-------CCCHHHHHHHHHHHHHH-HHhHHHHH-HHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 777665421000 01223344444445443 33444433 6889999999999999999777777776666655
Q ss_pred HHHH-----Hhccc-------------ceeehhhhHHHHHHHHHHHhhccCC
Q psy17628 262 DDVE-----RAFGT-------------GVAFGTFAVYCIIGTFFVYFVVPET 295 (338)
Q Consensus 262 ~~~~-----~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (338)
+.+. +..|+ +...+++..+.++..++.++++++.
T Consensus 184 p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 184 PLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI 235 (462)
T ss_pred HHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 5433 33333 3334455566666665666655543
No 123
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.55 E-value=9.7e-14 Score=121.47 Aligned_cols=164 Identities=11% Similarity=0.063 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh-cCCchHHHHHhHHHH
Q psy17628 103 KATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMA 180 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~ 180 (338)
+..+..+.......+ +++....+++.+++ +.|++..+..+....+.....+..+++|+++|| +|||++++.+.++..
T Consensus 14 ~~~~~~~~~~~~er~-~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~ 92 (489)
T PRK10207 14 RPFFMIFFVELWERF-GYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA 92 (489)
T ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence 334444444433333 36666666666665 469888888888888888888888899999999 999999999999999
Q ss_pred HHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCch--hhhhHHHHHHHHHHHHHHHHH
Q psy17628 181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD--VKGLALGVICILGSLIEFVVV 258 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~~~~ 258 (338)
++.+.+++.. +.....++...+.+.+.+....... +++.|.+|++ .|+.++++.+...++|..++|
T Consensus 93 ~g~~~~~~~~-----------~~~~ll~~~~~l~~ig~g~~~~~~~-~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~ 160 (489)
T PRK10207 93 IGYFMTGMSL-----------LKPDLIFIALGTIAVGNGLFKANPA-SLLSKCYPPKDPRLDGAFTLFYMSINIGSLISL 160 (489)
T ss_pred HHHHHHHHhc-----------cchhHHHHHHHHHHhccccccCCHH-HHHHHhcCCCchhhhcchhHHHHHHHHHHHHHH
Confidence 9888776541 1111222334444444444444444 7899999887 457789999999999999999
Q ss_pred HHHHHHHHhcccceeehhhhH
Q psy17628 259 KTFDDVERAFGTGVAFGTFAV 279 (338)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~ 279 (338)
.+.+.+.+..||++.|++.++
T Consensus 161 ~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 161 SLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred HHHHHHHHhhChHHHHHHHHH
Confidence 999999999999988877543
No 124
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.54 E-value=9.4e-13 Score=112.79 Aligned_cols=153 Identities=12% Similarity=0.029 Sum_probs=100.9
Q ss_pred HHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628 123 VIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (338)
Q Consensus 123 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (338)
..+..|.+.++ .|.++.+.+.......++.++++++.+++.||.++|+.+..+.. .++....+...
T Consensus 224 ~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~------------ 290 (393)
T PRK11195 224 LRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ------------ 290 (393)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH------------
Confidence 33444555544 48899999999999999999999999999999999887776643 33322222211
Q ss_pred hhchHHHHHHHHHHHhhcccccccceeeeeccCCchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHH
Q psy17628 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV-KGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY 280 (338)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (338)
.+.+.......+.+.+.+....+.. +.+.+..|++. +|++.++.+...+++..++..+.+. .+..|.+..+.+.+..
T Consensus 291 ~~~~~~~~~~~~~G~~~g~~~~~~~-~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 368 (393)
T PRK11195 291 HSLLPAYPLLILIGALGGFFVVPMN-ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSL-LVKLGVPVVAVIVGFG 368 (393)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhHH-HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHH
Confidence 1122233333344444444444444 55667666654 7999999999999999888888774 4677877777665555
Q ss_pred HHHHHHHHHh
Q psy17628 281 CIIGTFFVYF 290 (338)
Q Consensus 281 ~~~~~~~~~~ 290 (338)
.++...+.+.
T Consensus 369 ~~~~~~~~~~ 378 (393)
T PRK11195 369 LLVALAMALL 378 (393)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 125
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.54 E-value=2e-13 Score=120.34 Aligned_cols=179 Identities=13% Similarity=0.033 Sum_probs=112.4
Q ss_pred HHHhhhcchHHHHHhhHHHHHhccCCCCCc-chh-----hHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHH
Q psy17628 112 LCFLSFSGINVVIFYLKRILIATNSKIISP-NYG-----QNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGA 185 (338)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~-----~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 185 (338)
..+........+.+..|.+.++.+.+.++. ... .+...++..+|+++.|+++||+|||+++..+.++++++.++
T Consensus 24 g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~ 103 (490)
T PRK10642 24 GNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFC 103 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 333333334455556666655554332221 111 35556788899999999999999999999999999999888
Q ss_pred HHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 186 LGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE 265 (338)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (338)
+++........ .......++...+.+++.+..+.... .+++|.+|++.||...++......+|..+++.+...+.
T Consensus 104 ~a~~~~~~~~g----~~a~~~l~~~R~l~G~g~g~~~~~~~-~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~ 178 (490)
T PRK10642 104 IGLIPSYATIG----IWAPILLLLCKMAQGFSVGGEYTGAS-IFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLIS 178 (490)
T ss_pred HHhcccHHHHH----HHHHHHHHHHHHHHHhHhHhhHHHHH-HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87752111000 00001234455555666555544444 79999999999999999887776666666654443322
Q ss_pred --------HhcccceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628 266 --------RAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 266 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
..+||++.|++.+.+.++ .++....+||+.
T Consensus 179 ~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp 216 (490)
T PRK10642 179 TIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETP 216 (490)
T ss_pred HhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCCh
Confidence 357899988875544443 333444567764
No 126
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.54 E-value=2.8e-14 Score=125.80 Aligned_cols=163 Identities=14% Similarity=0.085 Sum_probs=116.8
Q ss_pred HHHhhHHHHHhccCC--------CCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhh
Q psy17628 123 VIFYLKRILIATNSK--------IISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLK 194 (338)
Q Consensus 123 ~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (338)
.....+....+.+++ ..+.++..+...++..++.++.|+++||+|||++++.+.++..++.++......
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~--- 123 (481)
T TIGR00879 47 IGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF--- 123 (481)
T ss_pred hhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 334445444554444 788899999999999999999999999999999999998888887776644310
Q ss_pred cccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHhcccc
Q psy17628 195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTF---DDVERAFGTG 271 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 271 (338)
....+..++...+.+.+.+...... ..++.|.+|+++|++++++.+....+|..+++.+. ....+..+|+
T Consensus 124 ------~~~~~~~~~~r~l~G~~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~ 196 (481)
T TIGR00879 124 ------ALSVEMLIVGRVLLGIGVGIASALV-PMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWR 196 (481)
T ss_pred ------ccchHHHHHHHHHHHhhhhHHHhHH-HHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHH
Confidence 1111244455555555555444333 47899999999999999999999999999988887 5444667888
Q ss_pred eeehhhhHHHHHHHHHHHhhccCCC
Q psy17628 272 VAFGTFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
+.|++.+...++. ++..+++||+.
T Consensus 197 ~~f~~~~~~~~~~-~~~~~~l~~~~ 220 (481)
T TIGR00879 197 IPLGLQLIPAGLL-FLGLFFLPESP 220 (481)
T ss_pred HHHHHHHHHHHHH-HHHHhcCCCCh
Confidence 8888754444433 34455577763
No 127
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.54 E-value=1.3e-13 Score=120.58 Aligned_cols=155 Identities=13% Similarity=0.044 Sum_probs=119.5
Q ss_pred cchHHHHHhhHHHHHh---ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh-cCCchHHHHHhHHHHHHHHHHHHHHHHh
Q psy17628 118 SGINVVIFYLKRILIA---TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLL 193 (338)
Q Consensus 118 ~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~ 193 (338)
.+++....++|.++++ .|++..+.+.......++..++.+++|+++|| +|||+++..+.++.+++.++++..
T Consensus 24 ~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~---- 99 (475)
T TIGR00924 24 FSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS---- 99 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc----
Confidence 3466778888888765 68899999999999999999999999999999 899999999999888887766653
Q ss_pred hcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628 194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV---KGLALGVICILGSLIEFVVVKTFDDVERAFGT 270 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (338)
...+...+...+.+.+.+....... ++++|.+|++. |+++.++.+...++|..+++.+.+.+.+..+|
T Consensus 100 --------~~~~~~~~~~~l~g~g~g~~~~~~~-~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~ 170 (475)
T TIGR00924 100 --------IYPDLIFYGLGTIAVGSGLFKANPS-SMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGY 170 (475)
T ss_pred --------ccHhHHHHHHHHHHhccccccCCHH-HHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 1112233333444444443333333 68889998754 88899999999999999999999999998899
Q ss_pred ceeehhhhHHHHHHH
Q psy17628 271 GVAFGTFAVYCIIGT 285 (338)
Q Consensus 271 ~~~~~~~~~~~~~~~ 285 (338)
+..|.+.++..+++.
T Consensus 171 ~~~f~~~~~~~~~~~ 185 (475)
T TIGR00924 171 HVGFNLAAVGMVIGL 185 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877665444443
No 128
>PRK10054 putative transporter; Provisional
Probab=99.54 E-value=8.6e-14 Score=119.27 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=89.9
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHH
Q psy17628 135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIY 214 (338)
Q Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (338)
+.+....+.......+......+..|++.||.++|+.+..+..+..++...+... .++.+...+...++
T Consensus 240 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 308 (395)
T PRK10054 240 DFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS-----------GNSLLLWGMSAAVF 308 (395)
T ss_pred chHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc-----------chHHHHHHHHHHHH
Confidence 4444455566666666666777888999999999999888877666665544332 01112223333344
Q ss_pred HHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHH
Q psy17628 215 IIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT 285 (338)
Q Consensus 215 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (338)
+.+... ..+...+.+.+..|++.|+++.+..+ ...+|..++|.+.+.+.|+.|....+.+.+.+..+..
T Consensus 309 ~~g~~~-~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~ 377 (395)
T PRK10054 309 TVGEII-YAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAW 377 (395)
T ss_pred HHHHHH-HHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHH
Confidence 433332 22333367788889999999988654 6778999999999999999887666655444443333
No 129
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.54 E-value=1.3e-13 Score=118.63 Aligned_cols=160 Identities=8% Similarity=-0.196 Sum_probs=113.7
Q ss_pred hcchHHHHHhhHHHH-HhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy17628 117 FSGINVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKL 195 (338)
Q Consensus 117 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (338)
..+.......+|.++ ++.|.+..+.++..+...++..+++++.|+++||+|||+++..+.++.+++.+.+.......+.
T Consensus 28 ~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 107 (399)
T PRK05122 28 YLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAW 107 (399)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 333556666777755 5669999999999999999999999999999999999999999988877766554443211100
Q ss_pred ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeh
Q psy17628 196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFG 275 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (338)
. ....+..++...+.+.+.+....... .++.|.+|+++|++++++......++..+++.+.+.+.+..||+..+.
T Consensus 108 ~----~~~~~~l~~~r~l~G~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~ 182 (399)
T PRK05122 108 P----VLSLLLLLLGRLLLGIGESLAGTGSI-LWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGL 182 (399)
T ss_pred c----hhHHHHHHHHHHHHHhhHHhhcchHH-HHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 0 00112334444455555444333333 567899999999999999888888888889998888888889876655
Q ss_pred hhhHHH
Q psy17628 276 TFAVYC 281 (338)
Q Consensus 276 ~~~~~~ 281 (338)
+..++.
T Consensus 183 ~~~~~~ 188 (399)
T PRK05122 183 LIMLLA 188 (399)
T ss_pred HHHHHH
Confidence 544433
No 130
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.53 E-value=4.6e-13 Score=112.78 Aligned_cols=175 Identities=11% Similarity=-0.015 Sum_probs=132.8
Q ss_pred HHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCC-cchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHH
Q psy17628 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIIS-PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI 183 (338)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 183 (338)
.+++++..++..+ -.......|.+.++.|++..+ .+.+......+..+..+++|+++||+|-|+++..+.+..++..
T Consensus 29 ~~~lC~fGF~~e~--R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t 106 (511)
T TIGR00806 29 VLYLCFYGFMAQF--RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVW 106 (511)
T ss_pred HHHHHHHHHHHHh--hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 4444444444333 334556677788888999999 9999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 184 GALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDD 263 (338)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 263 (338)
++.++. .....+.+...+++.+-+..+ ... .++...+|++.|+++.|+.+....+|.++++++.+.
T Consensus 107 ~L~~fa------------~Sl~~L~i~R~llGvaEA~~~-A~~-syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 107 LLLLLG------------TSVWHMQLMEVFYSVTMAARI-AYS-SYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHH------------HHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887764 123455566667777666666 444 799999999999999999999999999999999998
Q ss_pred HHHhcccceeehh--hhHHHHHHHHHHHhhccCCC
Q psy17628 264 VERAFGTGVAFGT--FAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 264 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 296 (338)
+..+||+....+ +...+...+++..+++|..+
T Consensus 173 -l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~ 206 (511)
T TIGR00806 173 -LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPK 206 (511)
T ss_pred -HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 667888774432 33334444445556677443
No 131
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.52 E-value=1.7e-13 Score=116.12 Aligned_cols=130 Identities=10% Similarity=0.075 Sum_probs=85.1
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHH-HHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVG-FIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
.+....+.|.+.++.|++..+.+......+ +..+++.+++|+++||+|||+.+..+.++.++....+.+........ .
T Consensus 225 ~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~ 303 (356)
T TIGR00901 225 DSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHD-G 303 (356)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc-c
Confidence 455667788888888888888877776655 57789999999999999999998888777666554433321000000 0
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHH
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGS 251 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 251 (338)
......+.......+.+++.+....... +++.|.+|++.||+.+|+.+...+
T Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 304 ITFPHLLMLFLTITLEAVTGGLGTVAFV-AFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHH-HHHHHhcCCCccHHHHHHHHHHHh
Confidence 0001112233333344444444444444 899999999999999999876653
No 132
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.52 E-value=1.4e-13 Score=118.02 Aligned_cols=148 Identities=11% Similarity=-0.032 Sum_probs=117.0
Q ss_pred HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (338)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
.......|.+.++.|.|..+.++..+...++..+++++.|+++||+|||+++..+..+.+++.+..++.
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a----------- 94 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY----------- 94 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC-----------
Confidence 456677889999999999999999999999999999999999999999999999999999999888764
Q ss_pred hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccceeehhhhH
Q psy17628 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF-GTGVAFGTFAV 279 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 279 (338)
++.+..++...+.+.+.+....... .++.+.+| ++|+.++++.......|..+++.+.+.+.++. +|+..+.+.+.
T Consensus 95 -~~~~~ll~~r~l~Gig~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~ 171 (393)
T PRK09705 95 -PQSALLLSSALLGGVGIGIIQAVMP-SVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWAL 171 (393)
T ss_pred -cchHHHHHHHHHHHhHHHHHhhhhh-HHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1223344555555666554444444 67788887 67999999998888888888888888877765 78776655544
Q ss_pred HHH
Q psy17628 280 YCI 282 (338)
Q Consensus 280 ~~~ 282 (338)
..+
T Consensus 172 ~~~ 174 (393)
T PRK09705 172 PAV 174 (393)
T ss_pred HHH
Confidence 433
No 133
>PRK12382 putative transporter; Provisional
Probab=99.51 E-value=2.1e-13 Score=117.11 Aligned_cols=151 Identities=11% Similarity=-0.133 Sum_probs=106.0
Q ss_pred hHHHHHhhHHHH-HhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 120 INVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 120 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
........|.++ ++.|.+..+.++..+...++..+++++.|+++||+|||+++..+.+...++.+............
T Consensus 31 ~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 108 (392)
T PRK12382 31 VGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSA-- 108 (392)
T ss_pred HHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccch--
Confidence 445556666654 56799999999999999999999999999999999999999988777666544322211100000
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFG 275 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (338)
..+.+..++...+.+.+.+....... +++.|.+|+++|++++++.......+..+++.+.+.+.+..||+..+.
T Consensus 109 --~~~~~~l~~~r~l~G~~~~~~~~~~~-~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~ 182 (392)
T PRK12382 109 --PFKFALLVVGRLILGFGESQLLTGAL-TWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALAL 182 (392)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHH
Confidence 01223334444455544443333232 577899999999999999888888888899999888888888865443
No 134
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.51 E-value=3.1e-14 Score=120.36 Aligned_cols=212 Identities=17% Similarity=0.249 Sum_probs=127.6
Q ss_pred echhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHH
Q psy17628 4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE 77 (338)
Q Consensus 4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 77 (338)
+|.++++.++.. ||+.|++. +++.++..++...+++++|+....+.+.++.
T Consensus 132 ~g~~~g~~l~~~l~~~~~~~~~~~~~---~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------------------- 188 (352)
T PF07690_consen 132 LGSILGPLLGGFLISYFGWRWAFLIS---AILSLIAAILFILFLPEPPPPRERESPKESE-------------------- 188 (352)
T ss_dssp HHHHHHHHHHHHCCCHCHHCCHHHHH---HHHHHHHHHHHHCCC---STTTT--SSTTTT--------------------
T ss_pred hhhhcccchhhhhhhccccccccccc---cchhhhhhhhHhhhhhhcccccccccccccc--------------------
Confidence 455555555544 99999999 7777776555556666655311111100000
Q ss_pred HHHHHHHhhhhhh-HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHH-HHhccCC-CCCcchhhHHHHHHHHH
Q psy17628 78 LQKELDIQAQKKK-SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRI-LIATNSK-IISPNYGQNIVGFIQVI 154 (338)
Q Consensus 78 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~ 154 (338)
++.+++.. .++..++++..+ ..+....... ........+.|.+ .+..|.+ ..+.+....+..+...+
T Consensus 189 -----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (352)
T PF07690_consen 189 -----SKKPKPLKPGFKSLFKNPVLW-ILLIAFFLFF----FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGII 258 (352)
T ss_dssp -------HHHCCCH-CTHHHHHHCCH-HHHHHHHHHH----HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHH
T ss_pred -----cccccccccccccccccchhh-hhhhhhhHHH----HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 00011111 244555555333 1222222221 1244577788887 4555888 67777888889999999
Q ss_pred HHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccC
Q psy17628 155 MTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF 234 (338)
Q Consensus 155 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 234 (338)
+.++.|+++||+++|+..........+..+.+...... .+....+....+.+.+.+....... .++.|..
T Consensus 259 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~ 328 (352)
T PF07690_consen 259 GSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS---------SSPVWLIIALFLIGFGFGIVFPILF-SLIQELV 328 (352)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH---------CHHHHHHHHHHHHHHHHHHHCHHHH-HHHHCCC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhC
Confidence 99999999999999888777766666655544432111 1122333344445555544444444 7899999
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHH
Q psy17628 235 TPDVKGLALGVICILGSLIEFVVV 258 (338)
Q Consensus 235 p~~~r~~~~~~~~~~~~~~~~~~~ 258 (338)
|++.||++.|+.+....+++.++|
T Consensus 329 ~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 329 PPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999998876
No 135
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.51 E-value=2.4e-13 Score=114.88 Aligned_cols=157 Identities=14% Similarity=0.105 Sum_probs=124.7
Q ss_pred chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
.........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~--------- 84 (352)
T cd06174 14 DRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA--------- 84 (352)
T ss_pred hhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh---------
Confidence 35566777888888889999999999999999999999999999999999999999988888887766553
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA 278 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
.+.+...+...+.+.+.+....... .++.|.+|+++|++.+++.+....++..+++.+.+.+.+..+|+..+.+.+
T Consensus 85 ---~~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (352)
T cd06174 85 ---SSLWLLLVGRFLLGLGGGALYPAAA-ALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA 160 (352)
T ss_pred ---ccHHHHHHHHHHHHcccccccHhHH-HHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1223344444555555444444444 789999999999999999999999999999999999998888888877766
Q ss_pred HHHHHHHHHH
Q psy17628 279 VYCIIGTFFV 288 (338)
Q Consensus 279 ~~~~~~~~~~ 288 (338)
.+.++..+..
T Consensus 161 ~~~~~~~~~~ 170 (352)
T cd06174 161 ILGLLLALLL 170 (352)
T ss_pred HHHHHHHHHH
Confidence 6655554443
No 136
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.51 E-value=6.1e-13 Score=112.62 Aligned_cols=137 Identities=12% Similarity=0.046 Sum_probs=96.4
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc-CCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
++....+.|.++++.|++..+.+...+...++.+++.++.|++.||+ +||+.+..+..+.+++.+.+.+..
T Consensus 213 ~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 284 (355)
T TIGR00896 213 YYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP-------- 284 (355)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh--------
Confidence 44566788999988899998999999999999999999999999999 566666666666666655444321
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeec-cCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGE-LFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT 270 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (338)
.. .. .....+.+.+.+....... +.+.+ ..+++.++...++.+.++.++..++|.+.+.+.++.|.
T Consensus 285 ---~~-~~-~~~~~l~g~~~g~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 285 ---MH-GL-WAWALVLGLGQGGAFPLAL-TLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred ---hh-HH-HHHHHHHHHhhhhHhHHHH-HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 01 11 1122334444433332222 33433 34566778999999999999999999999999998774
No 137
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.50 E-value=3e-13 Score=117.50 Aligned_cols=175 Identities=14% Similarity=0.058 Sum_probs=108.4
Q ss_pred hhhcchHHHHHhhHHHHHhcc---CCCCCc---chhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHH
Q psy17628 115 LSFSGINVVIFYLKRILIATN---SKIISP---NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGY 188 (338)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~g---~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 188 (338)
........+....|.+.++.+ .+..+. +.......++..++++++|+++||+|||+.+..+..+.+++.+++++
T Consensus 33 ~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~ 112 (432)
T PRK10406 33 VEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIAC 112 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhh
Confidence 334445556666676766654 233322 23344455666699999999999999999999999999888887766
Q ss_pred HHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy17628 189 YFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE--- 265 (338)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--- 265 (338)
........ .......++...+.+.+.+..+.... ++++|.+|+++|+.+.++.......|..+++.+...+.
T Consensus 113 ~~~~~~~~----~~~~~~l~~~R~l~G~g~g~~~~~~~-~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 187 (432)
T PRK10406 113 LPGYETIG----TWAPALLLLARLFQGLSVGGEYGTSA-TYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTL 187 (432)
T ss_pred cCCchhHH----HHHHHHHHHHHHHHHhhhhhhHhhHH-HHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 41110000 00112344455556655554444444 89999999999999988876666666555554433222
Q ss_pred -----HhcccceeehhhhHHHHHHHHHHHhhccCC
Q psy17628 266 -----RAFGTGVAFGTFAVYCIIGTFFVYFVVPET 295 (338)
Q Consensus 266 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (338)
+.+|||..|++.++..++.. +.....||+
T Consensus 188 ~~~~~~~~gWr~~F~i~~~~~ll~~-~~~~~~~e~ 221 (432)
T PRK10406 188 EDAELREWGWRIPFALGAVLAVVAL-WLRRQLDET 221 (432)
T ss_pred CHHHHhccchHHHHHHHHHHHHHHH-HHHhcCCCC
Confidence 25789998877665554432 333335554
No 138
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.49 E-value=6.5e-13 Score=129.29 Aligned_cols=130 Identities=8% Similarity=-0.057 Sum_probs=93.9
Q ss_pred HHHHhhHHHHHh-ccCCCC-CcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 122 VVIFYLKRILIA-TNSKII-SPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 122 ~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
....+.|.++.+ .|++.. ..+++.+...++.+++.++.|+++||+++++.+.++.++.+++.+++...
T Consensus 250 ~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------- 319 (1146)
T PRK08633 250 LAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA---------- 319 (1146)
T ss_pred HHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh----------
Confidence 445566666655 588887 88899999999999999999999999999988888777776666555443
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDV 264 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (338)
.+.+..++...+++++.+....+.. +++.+..|++.||+++|+.+.+..++..+++.+.+.+
T Consensus 320 --~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l 381 (1146)
T PRK08633 320 --PSLASVLVLFFLFGFSAGLFIVPLN-ALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF 381 (1146)
T ss_pred --hhHHHHHHHHHHHHHHHHHhhHHHH-HHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1122333444444444444444443 7888999999999999999999988887666555444
No 139
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.49 E-value=2.6e-12 Score=109.13 Aligned_cols=188 Identities=14% Similarity=0.085 Sum_probs=127.5
Q ss_pred HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhcc-CCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCc
Q psy17628 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATN-SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169 (338)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 169 (338)
+..+++|+|+.....+..++. .........|.+.++++.| .+....+...++..+..++.-...+++..|+|.|
T Consensus 199 ~~~~llk~~~~~~Fll~~~l~-----~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~ 273 (400)
T PF03825_consen 199 DALKLLKNPRFLVFLLAAFLI-----GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK 273 (400)
T ss_pred HHHHHhcCccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 345688887533222222222 2224566778888899987 6777777777888899999999999999999999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHH----HHHHHhhcccccccceeeeeccCCchhhhhHHHH
Q psy17628 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASL----AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGV 245 (338)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 245 (338)
+++.++.+..++-..+.+.. .++.+...... .+.+..++..+.... .++.+..|++.|++++++
T Consensus 274 ~ll~~a~~~~~vR~~l~a~~-----------~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~-~yi~~~~p~~~~at~Q~l 341 (400)
T PF03825_consen 274 WLLLLALVAYAVRWLLYAYF-----------SDPWPFIVALQLLGQLLHGLTFGLFHAASV-RYIDRIAPPELRATAQGL 341 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----------cCCcHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHhCCccchHHHHHH
Confidence 99999988888777665543 11222222222 245655655555555 789999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhcccceee------hhhhHHHHHHHHHHHhhccCC
Q psy17628 246 ICIL-GSLIEFVVVKTFDDVERAFGTGVAF------GTFAVYCIIGTFFVYFVVPET 295 (338)
Q Consensus 246 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 295 (338)
.+.. ..+|..++..+.|++.+.+|.+..+ .+.+++.++..++.+++.||+
T Consensus 342 ~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 342 YSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 7765 6789999999999999988765433 333333444444444444443
No 140
>TIGR00898 2A0119 cation transport protein.
Probab=99.48 E-value=1.3e-13 Score=122.36 Aligned_cols=155 Identities=12% Similarity=0.012 Sum_probs=114.2
Q ss_pred HhhHHHHHhccCC---CCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628 125 FYLKRILIATNSK---IISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (338)
Q Consensus 125 ~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (338)
.+.+.+.++.+.+ ..+.++..+...++.+++.++.|+++||+|||++++.+.++..++.++..+.
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~------------ 177 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS------------ 177 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc------------
Confidence 3456677777887 7788999999999999999999999999999999999988888877766553
Q ss_pred hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHH
Q psy17628 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC 281 (338)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (338)
.+.+..++...+.+++.+.. .+....++.|.+|++.|+.+.++......+|..+++.+...+.+ |++.+++.++..
T Consensus 178 ~~~~~~~~~r~l~G~~~~~~-~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~ 253 (505)
T TIGR00898 178 PNYTVFLVFRLLVGMGIGGI-WVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPT 253 (505)
T ss_pred ccHHHHHHHHHHHHhhccch-HHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHH
Confidence 12233444445555444433 44444899999999999999999887777787777766544332 888887777666
Q ss_pred HHHHHHHHhhccCCC
Q psy17628 282 IIGTFFVYFVVPETK 296 (338)
Q Consensus 282 ~~~~~~~~~~~~~~~ 296 (338)
++..+.. +++||+.
T Consensus 254 ~~~~~~~-~~~~esp 267 (505)
T TIGR00898 254 FLFFLLS-WFVPESP 267 (505)
T ss_pred HHHHHHH-HhcCCCh
Confidence 6555444 5678864
No 141
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.48 E-value=7.7e-13 Score=113.68 Aligned_cols=159 Identities=7% Similarity=-0.096 Sum_probs=119.3
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
........|.+.++.|.+..+.++..+...++..+++++.|++.||+|||+.+..+..+.+++.+++.....
T Consensus 19 ~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~-------- 90 (410)
T TIGR00885 19 NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE-------- 90 (410)
T ss_pred HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 345557778888888999999999999999999999999999999999999999999998888766533210
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER------------- 266 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 266 (338)
..+.+..+....+.+.+.+....... .++.+..|++.|++.+++.+....+|..+++.+.+.+..
T Consensus 91 -~~~~~~~l~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~ 168 (410)
T TIGR00885 91 -IMNYTLFLVGLFILTAGLGFLETAAN-PYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDK 168 (410)
T ss_pred -hccHHHHHHHHHHHHhhHHHHHhhhh-HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhh
Confidence 01223344445555555555555444 677888899999999999999999999999888776642
Q ss_pred -------------hcccceeehhhhHHHHHHHHHH
Q psy17628 267 -------------AFGTGVAFGTFAVYCIIGTFFV 288 (338)
Q Consensus 267 -------------~~~~~~~~~~~~~~~~~~~~~~ 288 (338)
..+|+.+|.+.+++.++..++.
T Consensus 169 ~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 169 LSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2357788877777665554333
No 142
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.48 E-value=1.5e-13 Score=114.72 Aligned_cols=188 Identities=13% Similarity=0.150 Sum_probs=131.0
Q ss_pred HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHH----hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc
Q psy17628 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILI----ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA 166 (338)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 166 (338)
...+++|+|+.|...+........ ++.+-...+.+.. +.+.+....+...+...+..++...+..++.+|+
T Consensus 212 ~~~~l~k~~~fw~~~l~v~g~~~~-----Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri 286 (412)
T PF01306_consen 212 DVLSLFKMRNFWFFVLFVIGVAAI-----YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI 286 (412)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355677776544333322222222 3333333444443 3334445567888888999999999999999999
Q ss_pred CCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHH
Q psy17628 167 GRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVI 246 (338)
Q Consensus 167 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 246 (338)
|.|+.++++..++++-.+.+++. ++.+.....-.+.+.-......... -|+.+.+|++..++...+.
T Consensus 287 g~k~~Lllag~i~~iRi~~~~~~------------~~~~~i~~~klLH~~e~~l~lva~f-kYI~~~fd~rlsAt~y~v~ 353 (412)
T PF01306_consen 287 GAKNLLLLAGVIMAIRIIGSGFA------------TNPWVISLIKLLHALEFPLLLVAAF-KYITAHFDKRLSATLYLVG 353 (412)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHT--------------SHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHS-GGGHHHHHHHH
T ss_pred ChHhHHHHHHHHHHHHHHHHhhh------------cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHhHHHHHHHHH
Confidence 99999999999988888777664 2344555555666655555554554 7999999999999998885
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628 247 -CILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 247 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
+....++..+.+.+.|.+.|+.|.+.++++.+.+.+...++..+.+++.+
T Consensus 354 ~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 354 FQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 56688889999999999999999988888888887777777777665443
No 143
>KOG2615|consensus
Probab=99.48 E-value=1.5e-13 Score=110.55 Aligned_cols=148 Identities=14% Similarity=0.096 Sum_probs=105.4
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHH
Q psy17628 137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII 216 (338)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (338)
+..-.+.+.+.+++.+.+.++.+|.++||+|||++++++.+..++...+.+.. .+...++...+.++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S-------------~~F~afv~aR~l~G 132 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS-------------RNFAAFVLARFLGG 132 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhh
Confidence 44556888889999999999999999999999999999998888877776664 22333344334444
Q ss_pred hhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---hcccceeehhhhHHH---HHHHHHHHh
Q psy17628 217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER---AFGTGVAFGTFAVYC---IIGTFFVYF 290 (338)
Q Consensus 217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~ 290 (338)
.+..-.+.+. ++++|+++++.|+.+++..+....+|-.++|.+.+++.. ..|....++-...++ ........+
T Consensus 133 i~kgnl~v~r-AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~ 211 (451)
T KOG2615|consen 133 IFKGNLSVIR-AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPW 211 (451)
T ss_pred hccCchHHHH-HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444 899999999999999999999999999999999998876 444333222111111 221233445
Q ss_pred hccCCCCC
Q psy17628 291 VVPETKNK 298 (338)
Q Consensus 291 ~~~~~~~~ 298 (338)
++|||-+.
T Consensus 212 ~lpETL~~ 219 (451)
T KOG2615|consen 212 FLPETLPL 219 (451)
T ss_pred hCCccccc
Confidence 68998443
No 144
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.48 E-value=5.8e-13 Score=114.10 Aligned_cols=156 Identities=10% Similarity=0.054 Sum_probs=111.9
Q ss_pred HHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhh
Q psy17628 123 VIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG 202 (338)
Q Consensus 123 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (338)
.....+.+..+.+.+..+.++..+.+.+...++.++.|+++||+|||++++.+..+.+++.+.+...
T Consensus 22 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~------------- 88 (393)
T PRK11195 22 LLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG------------- 88 (393)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-------------
Confidence 3444555667778788888999999999999999999999999999999999998887776655442
Q ss_pred hchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHH
Q psy17628 203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCI 282 (338)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (338)
... ++...+.+.+.+ ...+...+++.|++|+++|++++|+......++..++|.+.+.+.+.. +...+.+.+.+.+
T Consensus 89 ~~~--~~~r~l~G~~~a-~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~ 164 (393)
T PRK11195 89 IHP--LLAYGLVGIGAA-AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYL 164 (393)
T ss_pred HHH--HHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 011 333344444444 334454489999999999999999999999999999999999887753 4444443333332
Q ss_pred HHHHHHHhhccCCC
Q psy17628 283 IGTFFVYFVVPETK 296 (338)
Q Consensus 283 ~~~~~~~~~~~~~~ 296 (338)
+. .+..+.+||.+
T Consensus 165 ~~-~~~~~~l~~~~ 177 (393)
T PRK11195 165 LA-ALFNLFIPRLG 177 (393)
T ss_pred HH-HHHHhcCCCCc
Confidence 22 33445567643
No 145
>KOG2504|consensus
Probab=99.48 E-value=1.2e-13 Score=120.15 Aligned_cols=182 Identities=15% Similarity=0.227 Sum_probs=129.2
Q ss_pred HHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCch--
Q psy17628 93 VEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP-- 170 (338)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-- 170 (338)
.++++++ .++.+.+.......+++....++|.+.++.|++..+.+...++.++..+++.++.|+++|+...++
T Consensus 292 ~~ll~~~-----~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~ 366 (509)
T KOG2504|consen 292 LSLLKDP-----KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALV 366 (509)
T ss_pred HHHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHH
Confidence 4566665 444555555555556778889999999999999999999999999999999999999999988443
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHH
Q psy17628 171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG 250 (338)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 250 (338)
+..++.++.+++...+... +..+..+....+++.+.+ .+.......+.|+.+.+.-..+.|+...+.
T Consensus 367 ~~~~~ll~~gl~~~~~p~~------------~~~~~l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~ 433 (509)
T KOG2504|consen 367 LFLLTLLIAGLARLFLPFA------------TTYVGLIVFSILFGFCVG-SFSSLTPVILVDLVGLEKLSNAYGLLLLFQ 433 (509)
T ss_pred HHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcChhhcchHHHHHHHHh
Confidence 4444555555554333332 111233333334443333 333333357889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcc-cceeehhhhHHHHHHHHHHHhhcc
Q psy17628 251 SLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYFVVP 293 (338)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 293 (338)
.++..++|++.+.+.|.++ |...|+..+.+.+++.... +..+
T Consensus 434 gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~-~~~~ 476 (509)
T KOG2504|consen 434 GIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL-LILR 476 (509)
T ss_pred HHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHH-HHhH
Confidence 9999999999999999888 6667777777666666443 3344
No 146
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.48 E-value=3.3e-13 Score=131.00 Aligned_cols=146 Identities=11% Similarity=0.007 Sum_probs=99.0
Q ss_pred hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
......+.|.++++. |.+..+.+++.+..+++.++|.++.|+++|+.++++.+..+.++.+++.+.+.+..........
T Consensus 241 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (1140)
T PRK06814 241 GAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPA 320 (1140)
T ss_pred HHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccc
Confidence 345566788888764 8888889999999999999999999999998887776666655555444433321000000000
Q ss_pred --------hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 199 --------LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER 266 (338)
Q Consensus 199 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (338)
......+...+...+++++.+....+.. +++.+..|++.||+++|+.+++..++..+++.+.+.+.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 321 QLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLF-AALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred cccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHH-HHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001233344444455555444444444 788999999999999999999999999999988887764
No 147
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.48 E-value=4.9e-13 Score=117.35 Aligned_cols=142 Identities=14% Similarity=0.025 Sum_probs=88.9
Q ss_pred HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (338)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
.....+.+++.+....+....+.......++.+++.++.++++||+|+|+.+..+..+..++.+.+.......
T Consensus 248 ~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~------- 320 (473)
T PRK10429 248 NIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAA------- 320 (473)
T ss_pred HHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC-------
Confidence 3444445555544422444445566666788889999999999999999999888776555544432211111
Q ss_pred hhhchHHHHHHHHHHHhhcccccccceeeeeccCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT-------PDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT 270 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (338)
....+..++...+.+.+.+... ...+++++|..+ .+..|...|...+...++..+++.+.+.+++..|+
T Consensus 321 ~~~~~~~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 321 PHNALLIVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred chhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1112233333334444444333 334467888854 23346688888999999999999999998887766
No 148
>PRK15075 citrate-proton symporter; Provisional
Probab=99.47 E-value=8.8e-13 Score=114.63 Aligned_cols=168 Identities=15% Similarity=0.063 Sum_probs=109.0
Q ss_pred HHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhh-HHH-----HHHHHHHHHHHHHhhhhcCCchHHHHHhHH
Q psy17628 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQ-NIV-----GFIQVIMTFFSSLLVDKAGRRPLLLISDIC 178 (338)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~-----~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 178 (338)
.....++..+........+....|.+.++.+.+..+.+... +.. .+...+++++.|+++||+|||+.++.+..+
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 34444445555555566788889999898887776654332 221 222346789999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHH
Q psy17628 179 MAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVV 258 (338)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 258 (338)
..++.+++++........ .......++...+.+.+.+....... .+++|.+|++.|++++++.....+++..+++
T Consensus 96 ~~~~~~l~~~~~~~~~~~----~~~~~~l~~~R~l~G~~~g~~~~~~~-~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~ 170 (434)
T PRK15075 96 MASGTLLIAFVPGYATIG----LAAPLLVLLGRLLQGFSAGVELGGVS-VYLAEIATPGRKGFYTSWQSASQQVAVVFAA 170 (434)
T ss_pred HHHHHHHHHhCCcHHHHH----HHHHHHHHHHHHHhhccccccHHHHH-HHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence 888888776641110000 00011234444555555544444444 7899999999999999998877777666655
Q ss_pred HHHHHH--------HHhcccceeehhh
Q psy17628 259 KTFDDV--------ERAFGTGVAFGTF 277 (338)
Q Consensus 259 ~~~~~~--------~~~~~~~~~~~~~ 277 (338)
.+.+.+ .+..||+++|++.
T Consensus 171 ~~g~~l~~~~~~~~~~~~gWr~~f~~~ 197 (434)
T PRK15075 171 LLGYLLNQWLSPAQMAEWGWRIPFLIG 197 (434)
T ss_pred HHHHHHHHhCCHHHHhccchHHHHHHH
Confidence 554433 3567898888753
No 149
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.47 E-value=6.3e-13 Score=113.49 Aligned_cols=164 Identities=13% Similarity=0.012 Sum_probs=111.5
Q ss_pred hHHHHHhhHHHH-HhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH-HhHHHHHHHHHHHHHHHHhhccc
Q psy17628 120 INVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI-SDICMAICIGALGYYFYLLKLDE 197 (338)
Q Consensus 120 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 197 (338)
........|.++ ++.|.+..+.++..+...+...+.+++.|+++||+|||+.++. +.....++.++....
T Consensus 13 ~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-------- 84 (375)
T TIGR00899 13 GALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN-------- 84 (375)
T ss_pred HHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc--------
Confidence 445556666665 4569999999999999999999999999999999999887654 444444444443332
Q ss_pred chhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHhcccceeeh
Q psy17628 198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLA--LGVICILGSLIEFVVVKTFDDVERAFGTGVAFG 275 (338)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (338)
.+.+..++...+.+.+.+ ...+....+..|..|++.|+.+ .+.......++..+++.+.+.+.+..+|+..++
T Consensus 85 ----~~~~~l~~~~~~~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~ 159 (375)
T TIGR00899 85 ----RNYFLLLVLGVLLSSFAS-TANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFL 159 (375)
T ss_pred ----chHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHH
Confidence 111222222333332222 2333333566777777766644 567777778889999999998888899999998
Q ss_pred hhhHHHHHHHHHHHhhccCCC
Q psy17628 276 TFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~ 296 (338)
+.+.+.++..++.++++||.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 160 TAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred HHHHHHHHHHHHHHHhCCCcc
Confidence 888777777666666677654
No 150
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.47 E-value=1.4e-12 Score=114.91 Aligned_cols=153 Identities=13% Similarity=0.065 Sum_probs=107.8
Q ss_pred chHHHHHhhHHHH-HhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh-cCCchHHHHHhHHHHHHHHHHHHHHHHhhcc
Q psy17628 119 GINVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLKLD 196 (338)
Q Consensus 119 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (338)
+++....+++.++ ++.|++..+................+++|+++|| +|||+.+..+.++.+++..++.+.
T Consensus 36 ~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~------- 108 (500)
T PRK09584 36 GYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS------- 108 (500)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-------
Confidence 3566777778777 4569888887777766665555556789999999 599999999998888887666543
Q ss_pred cchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceee
Q psy17628 197 EKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV--KGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAF 274 (338)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (338)
........+...+.+.+.+.... ...+++.|.+|++. |..+.++.+...++|..++|.+.+++.+..||++.|
T Consensus 109 ----~~~~~~l~~~~~l~gig~g~~~~-~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F 183 (500)
T PRK09584 109 ----GHDAGIVYMGMATIAVGNGLFKA-NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAF 183 (500)
T ss_pred ----cccHHHHHHHHHHHHHhhhcccC-CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 00112223333444444443333 33368899998643 456788889999999999999999999999999888
Q ss_pred hhhhHHHHH
Q psy17628 275 GTFAVYCII 283 (338)
Q Consensus 275 ~~~~~~~~~ 283 (338)
.+.++...+
T Consensus 184 ~i~~i~~~i 192 (500)
T PRK09584 184 ALSVVGMLI 192 (500)
T ss_pred HHHHHHHHH
Confidence 876644333
No 151
>PTZ00207 hypothetical protein; Provisional
Probab=99.47 E-value=6.8e-13 Score=116.64 Aligned_cols=166 Identities=9% Similarity=0.003 Sum_probs=114.6
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
.+.+..+.+.+.++.|++..+.++...+. .....+.++.|++.||+|+|+++.++.++..++.+++++......
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i----- 116 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI----- 116 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc-----
Confidence 45667788888888899998888777653 333456678899999999999999999999999887776411100
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhH
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV 279 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (338)
..+.+.+.+...+.+.+.+....... ..+.++|| +.||++.|+......+|+.+.+.+...+.. .+|+..+++.++
T Consensus 117 -~~s~~~l~l~r~l~G~G~~~~~~~~~-~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~v 192 (591)
T PTZ00207 117 -EGSVVRLSVYNGLMTLGCMLFDLGAV-VTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMS 192 (591)
T ss_pred -cCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 01223334444444444333333333 56788887 679999999999999999876666555443 356667777777
Q ss_pred HHHHHHHHHHhhccCC
Q psy17628 280 YCIIGTFFVYFVVPET 295 (338)
Q Consensus 280 ~~~~~~~~~~~~~~~~ 295 (338)
+.++..++.+.++++.
T Consensus 193 l~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 193 FALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHhheeCC
Confidence 7777776666666543
No 152
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.47 E-value=3.5e-12 Score=111.69 Aligned_cols=153 Identities=10% Similarity=0.039 Sum_probs=115.4
Q ss_pred HHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628 123 VIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (338)
Q Consensus 123 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (338)
....+|.+.++. |.++...+++.+..+++.++|+++.+++.+|+++++++..+.+..+++.+.+++.
T Consensus 237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~------------ 304 (524)
T PF05977_consen 237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS------------ 304 (524)
T ss_pred HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc------------
Confidence 345577777654 7788888999999999999999999999999999999888888877777666553
Q ss_pred hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHH
Q psy17628 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC 281 (338)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (338)
.+.+.....+++.+.+......... +.+.+..|++.||+.+++..+....+..++..+.|.+.+..|.+..+.+.+++.
T Consensus 305 ~~~~~~~~~l~l~G~~~~~~~~~~~-t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~l 383 (524)
T PF05977_consen 305 PSFWLALIALFLAGAAWIIANSSLN-TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAAL 383 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 1233444444455544444333333 677888999999999999999988888899999999999999877776655554
Q ss_pred HHHHHHH
Q psy17628 282 IIGTFFV 288 (338)
Q Consensus 282 ~~~~~~~ 288 (338)
+++.++.
T Consensus 384 ll~~~~~ 390 (524)
T PF05977_consen 384 LLSALIA 390 (524)
T ss_pred HHHHHHH
Confidence 4444443
No 153
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.45 E-value=3e-13 Score=98.36 Aligned_cols=137 Identities=17% Similarity=0.251 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccc
Q psy17628 145 QNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGP 224 (338)
Q Consensus 145 ~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (338)
.+...++..++.++.|++.||+|||+.+..+.....++.+..... .+.+.......+.+.+.+... +
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~~-~ 70 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS------------SNITVLIIARFLQGFGAAFAL-V 70 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHHHHHH-H
Confidence 345567888999999999999999999988887777776655432 112233334444444444333 3
Q ss_pred cceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccC
Q psy17628 225 IPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE 294 (338)
Q Consensus 225 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (338)
....++.|.+|++.|++++++.+....++..+++.+.+.+.+..+|+..+.+.+.+..+..+..++..||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 3447889999999999999999999999999999999998888888888877777777776666665554
No 154
>KOG2532|consensus
Probab=99.45 E-value=1e-12 Score=113.01 Aligned_cols=151 Identities=12% Similarity=0.046 Sum_probs=128.0
Q ss_pred ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHH
Q psy17628 134 TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI 213 (338)
Q Consensus 134 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (338)
.+++..+.+++.+....+.+++.+.+|+++||+|-|+++..+.++.++..++...... ...+..++...+
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~----------~~~~~~~~~R~l 137 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS----------IGFYLLLVLRFL 137 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH----------hcchhhHHHHHH
Confidence 3667788899999999999999999999999999999999999999988888776522 122345666777
Q ss_pred HHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cccceeehhhhHHHHHHHHHHHhhc
Q psy17628 214 YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA-FGTGVAFGTFAVYCIIGTFFVYFVV 292 (338)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (338)
.+.+.+..+..+. .+.+.+.|+++|++..++......+|..+.-++.|.+.+. .||+..|++.++++++..++.+++.
T Consensus 138 qGl~~g~~~pa~~-~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~ 216 (466)
T KOG2532|consen 138 QGLGQGVLFPAIG-SILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFY 216 (466)
T ss_pred hHHHHhHHHhhhh-ceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 7777776666666 8999999999999999999999999999999999999988 9999999999999988887776666
Q ss_pred cCC
Q psy17628 293 PET 295 (338)
Q Consensus 293 ~~~ 295 (338)
.|+
T Consensus 217 ~d~ 219 (466)
T KOG2532|consen 217 SDS 219 (466)
T ss_pred cCC
Confidence 554
No 155
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.45 E-value=3.8e-12 Score=104.45 Aligned_cols=188 Identities=14% Similarity=0.145 Sum_probs=129.5
Q ss_pred hhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcC
Q psy17628 89 KKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG 167 (338)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 167 (338)
+.+++++.+++ .+..+++..+...-+.+........+-. ++|++..+.........+..++|++++|++.||+|
T Consensus 242 ~~t~k~i~~~~-----~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg 316 (438)
T COG2270 242 KSTFKEIRGRK-----NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFG 316 (438)
T ss_pred HHHHHHHhccc-----chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34566665554 2333344444444456677777777776 66999999999999999999999999999999999
Q ss_pred CchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHH
Q psy17628 168 RRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVIC 247 (338)
Q Consensus 168 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 247 (338)
.|+++..+.++..+..+...+. ......+++..+.+...+.. ....-++.+++.|+++-++.+|+.+
T Consensus 317 ~k~vl~~~lvi~~~~~~~~~~~------------~~~~~f~i~gll~g~s~G~~-qA~SRSy~~~lvp~~k~~~fFglya 383 (438)
T COG2270 317 SKPVLMIGLVILSIAALYLIFL------------EGELDFWILGLLVGTSLGGA-QASSRSYLARLVPKGKEGRFFGLYA 383 (438)
T ss_pred CceeehHHHHHHHHHHHHHHHc------------cccHHHHHHHHHHHHhcchH-HHHHHHHHHHhCCCccccceeehhh
Confidence 9999988877776665544332 11223333334444444433 3444579999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccce-eehhhhHHHHHHHHHHHhhccCC
Q psy17628 248 ILGSLIEFVVVKTFDDVERAFGTGV-AFGTFAVYCIIGTFFVYFVVPET 295 (338)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 295 (338)
..+...+..+|.+.+.+.+.+|... .+....++..++ ++.++..|+.
T Consensus 384 ltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iG-l~~L~~v~~~ 431 (438)
T COG2270 384 LTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIG-LLLLLRVKVP 431 (438)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhh-HhhEEeecCC
Confidence 9999999999999999888777533 233333333333 3344445544
No 156
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.45 E-value=1.4e-11 Score=106.35 Aligned_cols=232 Identities=13% Similarity=0.061 Sum_probs=123.2
Q ss_pred echhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHH
Q psy17628 4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE 77 (338)
Q Consensus 4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 77 (338)
+|..+++.++.. ||+.|++. +++.++..++.++.+||+++. +++. .+
T Consensus 151 ~~~~~g~~lg~~l~~~~gw~~~f~~~---~~~~~i~~~~~~~~lp~~~~~---~~~~--------------~~------- 203 (413)
T PRK15403 151 VAPIIGPLSGAALMHFVHWKVLFAII---AVMGLIAFVGLLLAMPETVKR---GAVP--------------FS------- 203 (413)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHH---HHHHHHHHHHHHHhCCCCccc---cCCC--------------CC-------
Confidence 344555555543 99999999 777666555556678987530 0000 00
Q ss_pred HHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHH
Q psy17628 78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMT 156 (338)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~ 156 (338)
.+....+++++++++..+...+. .............+.|.++++. |++..+.++.......+..+++
T Consensus 204 -------~~~~~~~~~~ll~~~~~~~~~l~-----~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~ 271 (413)
T PRK15403 204 -------AKSVLRDFRNVFRNRLFLTGAAT-----LSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVAN 271 (413)
T ss_pred -------hHHHHHHHHHHHcCHHHHHHHHH-----HHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 00011245667777633322111 1112222445666788888776 8888888888877888888888
Q ss_pred HHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCc
Q psy17628 157 FFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP 236 (338)
Q Consensus 157 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 236 (338)
.+.+.+.++..+++.......+..++..++....... . ...+..++...+++.+.+....... .. +..-..
T Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~-~------~~~~~~~~~~~l~~~G~~~~~p~~~-~~-al~~~~ 342 (413)
T PRK15403 272 AIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLW-P------HVWLWSVLGTSLYAFGIGLIFPTLF-RF-TLFSNN 342 (413)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHc-c------ccHHHHHHHHHHHHHHHHHHhHHHH-HH-HhccCC
Confidence 8887766544444443333333333332222211000 0 1111123344444444443333222 11 111122
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHH
Q psy17628 237 DVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIG 284 (338)
Q Consensus 237 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (338)
..+|++.++.+.....+...++...+++.+. +...++....+++.+.
T Consensus 343 ~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 343 LPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVI 389 (413)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence 2478999998888888888888887776554 4445565555444433
No 157
>PRK09952 shikimate transporter; Provisional
Probab=99.45 E-value=2.1e-12 Score=112.26 Aligned_cols=172 Identities=10% Similarity=-0.003 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhhhcchHHHHHhhHHHHH-hc--cCCCCCcchhh-----HHHHHHHHHHHHHHHHhhhhcCCchHHHHHh
Q psy17628 105 TIVIVGLLCFLSFSGINVVIFYLKRILI-AT--NSKIISPNYGQ-----NIVGFIQVIMTFFSSLLVDKAGRRPLLLISD 176 (338)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--g~~~~~~~~~~-----~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 176 (338)
.+....+................|.+.. +. +.++. .+... ....++..+++++.|+++||+|||+.+..+.
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~ 101 (438)
T PRK09952 23 AALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTV 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHH
Confidence 3333333333333333344445554443 33 44444 23332 2344556788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHH
Q psy17628 177 ICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFV 256 (338)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~ 256 (338)
.+.+++.+++++........ .......++...+.+.+.+..+.... .++.|.+|++.|+...+.......+|..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~R~l~G~~~g~~~~~~~-~~~~e~~p~~~rg~~~~~~~~g~~~G~~l 176 (438)
T PRK09952 102 WMMGIATALIGLLPSFSTIG----WWAPVLLVTLRAIQGFAVGGEWGGAA-LLAVESAPKNKKAFYSSGVQVGYGVGLLL 176 (438)
T ss_pred HHHHHHHHHHhcCCcHHHHH----HHHHHHHHHHHHHHHhhhcccHHHHH-HHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 99998888777641111000 00011234445556666555544444 78999999999999998888877777777
Q ss_pred HHHHHHHHH--------HhcccceeehhhhHHHH
Q psy17628 257 VVKTFDDVE--------RAFGTGVAFGTFAVYCI 282 (338)
Q Consensus 257 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 282 (338)
++.+...+. ..+||+..|++.++..+
T Consensus 177 ~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 177 STGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred HHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 766555443 24789988876655443
No 158
>PRK10133 L-fucose transporter; Provisional
Probab=99.44 E-value=3.4e-12 Score=110.70 Aligned_cols=168 Identities=13% Similarity=-0.003 Sum_probs=107.2
Q ss_pred HHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHH-HHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCc
Q psy17628 92 LVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRI-LIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169 (338)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 169 (338)
.++++++|..+...+.. +... ........|.+.+ .++ .|+++.+.+.......++.+++.++++++.||+|+|
T Consensus 251 ~~~ll~~~~~~~~~l~~-~~~~----~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~ 325 (438)
T PRK10133 251 LSRLARIRHWRWAVLAQ-FCYV----GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH 325 (438)
T ss_pred HHHHHhCchHHHHHHHH-HHHH----HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 45667776443322221 1111 1233344456655 344 599999999999999999999999999999999999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHH
Q psy17628 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL 249 (338)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 249 (338)
+++..+..+..+.+.+..+. . ....+..+.+.+++.+..+.... +...|.+|++ .+++.++.. .
T Consensus 326 ~~l~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~l~glg~~~i~P~~~-s~a~~~~~~~-~~~as~l~~-~ 389 (438)
T PRK10133 326 KVLAAYALIAMALCLISAFA-----------G--GHVGLIALTLCSAFMSIQYPTIF-SLGIKNLGQD-TKYGSSFIV-M 389 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHc-----------C--ChHHHHHHHHHHHHHHHHHHHHH-HHHHcccchh-hccchhHHh-H
Confidence 99888766665544333221 0 11223344455556665555444 6777777753 567777765 4
Q ss_pred HHHHHHHHHHHHHHHHHhcc-cceeehhhhHH
Q psy17628 250 GSLIEFVVVKTFDDVERAFG-TGVAFGTFAVY 280 (338)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 280 (338)
..+++.++|++.+.+.+..| .+..+++...+
T Consensus 390 ~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~ 421 (438)
T PRK10133 390 TIIGGGIVTPVMGFVSDAAGNIPTAELIPALC 421 (438)
T ss_pred HhccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 55678889999999888876 45555543333
No 159
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.43 E-value=4.7e-12 Score=109.72 Aligned_cols=165 Identities=13% Similarity=0.086 Sum_probs=101.6
Q ss_pred hHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
......+.|.++++ .|++..+.+...+...+...+++++.|+++||+|||+.++.+..+.+++............
T Consensus 26 ~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~---- 101 (420)
T PRK09528 26 WSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPL---- 101 (420)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 44567777777776 6999999999999999999999999999999999999988765555443322211100000
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCC--chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT--PDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGT 276 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (338)
..........+.+...+....... ....++.+ .+.++..+|.....+.+|..+++.+.+.+.+ .+|+..|++
T Consensus 102 ----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~ 175 (420)
T PRK09528 102 ----LQYNILLGAIVGGIYLGFGFLAGA-GAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWL 175 (420)
T ss_pred ----HHHHHHHHHHHHHHHhhhhhccch-hhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHH
Confidence 000001111111111222222111 12222222 2345777788888889999999999887766 478788877
Q ss_pred hhHHHHHHHHHHHhhccC
Q psy17628 277 FAVYCIIGTFFVYFVVPE 294 (338)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~ 294 (338)
.+++.++..++.+...++
T Consensus 176 ~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK09528 176 GSGSALILLVLLFFAKPD 193 (420)
T ss_pred HHHHHHHHHHHHhccccc
Confidence 766666655444443333
No 160
>PRK09848 glucuronide transporter; Provisional
Probab=99.43 E-value=1.9e-12 Score=113.06 Aligned_cols=164 Identities=12% Similarity=-0.055 Sum_probs=100.9
Q ss_pred HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCc
Q psy17628 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169 (338)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 169 (338)
.++++++++..+...+..++. ..+........|++.++. |.+....++......++.+++.++.++++||+|+|
T Consensus 220 ~~~~l~~n~~f~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~ 294 (448)
T PRK09848 220 SLQTLKRNRPLFMLCIGALCV-----LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK 294 (448)
T ss_pred HHHHHhCCchHHHHHHHHHHH-----HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 466778877433222222221 112334444566666554 64444333334444566788899999999999999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCch-------hhhhH
Q psy17628 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD-------VKGLA 242 (338)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~ 242 (338)
+.+.++..+..++.+.+.+. . ..+.+...+...+.+.+.+.... ..+++.+|..|.+ .+|..
T Consensus 295 ~~~~~g~~~~~i~~~~~~~~---~-------~~~~~~~~~~~~l~g~G~~~~~~-~~~al~~~~~~~~~~~~g~r~~G~~ 363 (448)
T PRK09848 295 NTFLIGALLGTCGYLLFFWV---S-------VWSLPVALVALAIASIGQGVTMT-VMWALEADTVEYGEYLTGVRIEGLT 363 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHc---C-------chhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHhhCccchhHH
Confidence 99999887777766554431 0 01122333333444444444433 3336777776643 45899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628 243 LGVICILGSLIEFVVVKTFDDVERAFGT 270 (338)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (338)
+|+.+....++..+++.+.+.+++..|+
T Consensus 364 ~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 364 YSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999888877665
No 161
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.43 E-value=2.3e-12 Score=110.20 Aligned_cols=139 Identities=11% Similarity=-0.058 Sum_probs=106.8
Q ss_pred hhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhc
Q psy17628 116 SFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKL 195 (338)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (338)
..........+.|.+.++.|.|..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.......
T Consensus 18 ~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~------ 91 (381)
T PRK03633 18 LTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM------ 91 (381)
T ss_pred HHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 33345667788999999999999999999999999999999999999999999999999988888877665543
Q ss_pred ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17628 196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA 267 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (338)
++.+..++...+.+.+.+....... ..+.+..+++.|+++++.......+|..+++.+.+.+.+.
T Consensus 92 ------~~~~~l~~~~~l~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 92 ------VGFWSWLAWRFVAGIGCAMIWVVVE-SALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 1223334444444544443322222 4456778888999999999999999999999888876554
No 162
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.42 E-value=2.1e-12 Score=116.29 Aligned_cols=187 Identities=12% Similarity=-0.002 Sum_probs=128.2
Q ss_pred HHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHH
Q psy17628 107 VIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGAL 186 (338)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 186 (338)
+...+..+.+...........+.+.++++++..+.+++.+.+.++..++.++.+++.||+|||+.+.++.++++++.+++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 33333344333333445556677778889999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHhhcccc--------------------h----------------hh--hhch-HHHHHHHHHHHhhcccccccce
Q psy17628 187 GYYFYLLKLDEK--------------------L----------------VD--GLGL-LPVASLAIYIIVFSVGFGPIPG 227 (338)
Q Consensus 187 ~~~~~~~~~~~~--------------------~----------------~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~ 227 (338)
++..+....... . .. ...+ .+++..++.+.+.+.. .+...
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~-~~~~~ 194 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI-FPLGI 194 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc-hhcCc
Confidence 765322100000 0 00 0112 2334455555544443 34444
Q ss_pred eeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-c---------------------cceeehhhhHHHHHHH
Q psy17628 228 VMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF-G---------------------TGVAFGTFAVYCIIGT 285 (338)
Q Consensus 228 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------------~~~~~~~~~~~~~~~~ 285 (338)
+++.|.+|++.|+...++.+....+|..+++.+.+.+.+.+ + |+..|++.+++.++.+
T Consensus 195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~ 274 (633)
T TIGR00805 195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS 274 (633)
T ss_pred hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999998888776543 1 4445666665555555
Q ss_pred HHHHhhccCC
Q psy17628 286 FFVYFVVPET 295 (338)
Q Consensus 286 ~~~~~~~~~~ 295 (338)
+. +++.|++
T Consensus 275 v~-l~~~p~~ 283 (633)
T TIGR00805 275 IP-FFFFPKA 283 (633)
T ss_pred HH-HHhCccc
Confidence 43 3445654
No 163
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.42 E-value=5.1e-13 Score=116.73 Aligned_cols=154 Identities=15% Similarity=0.102 Sum_probs=109.9
Q ss_pred HHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhh
Q psy17628 124 IFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGL 203 (338)
Q Consensus 124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (338)
...++.+.++.| +..+..++.....++..++.++.|.++|.+|||..++.+.++..++.++.+.. ++
T Consensus 64 a~~l~~I~~diG-~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA------------~~ 130 (599)
T PF06609_consen 64 ASILPYINADIG-GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA------------QN 130 (599)
T ss_pred HHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC------------Cc
Confidence 344567778888 45667788889999999999999999999999999999999999999887654 22
Q ss_pred chHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHH
Q psy17628 204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCII 283 (338)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (338)
....+....+.+.+.+... .....++|+.|.+.|+.+.++...........++.+...+..+.+|||.+++..+...+
T Consensus 131 ~~~~iag~~l~GvgaG~~~--~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i 208 (599)
T PF06609_consen 131 MNTFIAGMVLYGVGAGVQE--LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGI 208 (599)
T ss_pred HHHHHHHHHHHHHhhHHHH--HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHH
Confidence 2334445555555433322 23346899999999988877665544343345555555555567899999988887777
Q ss_pred HHHHHHhhc
Q psy17628 284 GTFFVYFVV 292 (338)
Q Consensus 284 ~~~~~~~~~ 292 (338)
..++.+++.
T Consensus 209 ~~vl~~~fY 217 (599)
T PF06609_consen 209 ALVLIFFFY 217 (599)
T ss_pred HHHHHHHHh
Confidence 665554433
No 164
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.42 E-value=6.9e-12 Score=107.81 Aligned_cols=198 Identities=11% Similarity=-0.042 Sum_probs=112.4
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
||+.|++. +++.++..++..+++||+++. ++ ++ ++.+.++++.
T Consensus 161 ~~~~f~~~---~~~~~~~~~~~~~~~~~~~~~----~~-~~-----------------------------~~~~~~~~~~ 203 (394)
T PRK11652 161 WRACYLFL---LLLGAGVTFSMARWMPETRPA----DA-RR-----------------------------TRVLASYRTL 203 (394)
T ss_pred hHHHHHHH---HHHHHHHHHHHHHhCCccCcc----cc-ch-----------------------------hHHHHHHHHH
Confidence 99999998 666666555566678887531 00 00 0012244556
Q ss_pred HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 174 (338)
++++..+...... ... ..+......+.+.++++ .|.+..+.++......++.+++.++.+++.||++++...
T Consensus 204 ~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~-- 276 (394)
T PRK11652 204 LSNRRFNCYLLML-IGT----LAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ-- 276 (394)
T ss_pred HcChHHHHHHHHH-HHH----HHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 6665333222211 111 11233444556666666 588888888888788888888889999999998833322
Q ss_pred HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHH
Q psy17628 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE 254 (338)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 254 (338)
......++.+......... ....+.......+.+.+.+....... .+..|.+| +.++++.++.+....+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~-~~~g~~~~~~~~~~~lg~ 347 (394)
T PRK11652 277 SVICCLLAGLLMWIPGWFG-------VMNVWTLLVPAALFFFGAGMLFPLAT-SGAMEPFP-YLAGTAGALLGGLQNIGS 347 (394)
T ss_pred HHHHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcc-ccchHHHHHHHHHHHHHH
Confidence 2222222222111110000 01122333334444444444333333 56678777 578999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17628 255 FVVVKTFDDVER 266 (338)
Q Consensus 255 ~~~~~~~~~~~~ 266 (338)
.+++.+.+.+..
T Consensus 348 ~~~~~~~~~~~~ 359 (394)
T PRK11652 348 GLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHHHccC
Confidence 999988876543
No 165
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.40 E-value=3.1e-12 Score=108.88 Aligned_cols=124 Identities=12% Similarity=0.101 Sum_probs=83.6
Q ss_pred hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
......+.|.++++. |++..+.+.......+..+++.++.|+++||+|||+.+..+......+..++..... .
T Consensus 241 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--~---- 314 (366)
T TIGR00886 241 FLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV--S---- 314 (366)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC--C----
Confidence 345667778787664 888888888888899999999999999999999998887776655555444433210 0
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHH
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLI 253 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~ 253 (338)
....+.......+...+.+.+.+.. +.+.+|..| +.+|+++|+.+..+++|
T Consensus 315 --~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 315 --PLSLAVFIVLFVALFFFSGAGNGST-FALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred --cchHHHHHHHHHHHHHHhccccchh-hhcchhhch-hhcccHHHHHHHhccCC
Confidence 0012222233333344444444443 377888887 58999999988887664
No 166
>KOG3764|consensus
Probab=99.40 E-value=4.5e-13 Score=108.53 Aligned_cols=151 Identities=13% Similarity=0.086 Sum_probs=128.3
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHH
Q psy17628 135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIY 214 (338)
Q Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (338)
+-+.++.+++.....+.+++.+++.|.++||+|+|..+++|+.++..+.+++++. +.....++...+-
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg------------~sy~~l~vAR~LQ 169 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG------------NSYPMLFVARSLQ 169 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc------------chhHHHHHHHHHh
Confidence 4467788999999999999999999999999999999999999999999988875 2233455566666
Q ss_pred HHhhcccccccceeeeeccCCchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhcc
Q psy17628 215 IIVFSVGFGPIPGVMMGELFTPDV-KGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP 293 (338)
Q Consensus 215 ~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (338)
+.+.+....... ++++|.||.+. |++++|+.-.+..+|..++|++.|.+++..|.+.+|.+++.++++...+.++.++
T Consensus 170 gvgsA~~~tsgl-amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 170 GVGSAFADTSGL-AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred hhhHHHHHhhhH-HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeC
Confidence 666666655555 89999999876 6999999999999999999999999999999999999999999999988887776
Q ss_pred CCCCC
Q psy17628 294 ETKNK 298 (338)
Q Consensus 294 ~~~~~ 298 (338)
.++..
T Consensus 249 p~~~~ 253 (464)
T KOG3764|consen 249 PTEMD 253 (464)
T ss_pred ccccC
Confidence 55443
No 167
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.39 E-value=5.5e-12 Score=108.66 Aligned_cols=190 Identities=12% Similarity=0.073 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhh----hcCCchHHHHH-hHHH
Q psy17628 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD----KAGRRPLLLIS-DICM 179 (338)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~~~-~~~~ 179 (338)
++.........++. +.....+.+.++++.|.+....+.......+..++.+++.|+++| |+|||+.++.+ ....
T Consensus 6 li~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~ 84 (477)
T TIGR01301 6 LLRVASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV 84 (477)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence 34444444444443 566777888889999999999999999999999999999999999 59999998775 4444
Q ss_pred HHHHHHHHHHHHHhhcc-cc-hhhhhc---hHHHHHHHHHHHhhcccccccceeeeeccCCchhh--hhHHHHHHHHHHH
Q psy17628 180 AICIGALGYYFYLLKLD-EK-LVDGLG---LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK--GLALGVICILGSL 252 (338)
Q Consensus 180 ~~~~~~~~~~~~~~~~~-~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~~~~~~~~~~ 252 (338)
.++..++.+........ +. ...... +..++.+.+..+..+....+.. ++++|.+|+++| +.+.++.+...++
T Consensus 85 ~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~r-ALiaDl~p~~~~~~~~a~~~~~~~~~l 163 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCR-AFLADLTGGDARRTRIANAYFSFFMAI 163 (477)
T ss_pred HHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccCchhHHHHHHHHHHHHHHHH
Confidence 44444444321110000 00 000011 1223333344445555555665 899999998866 5788888888888
Q ss_pred HHHHHHHHHHHH--HHhc-------------ccceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628 253 IEFVVVKTFDDV--ERAF-------------GTGVAFGTFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 253 ~~~~~~~~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
|+.+++.+.+.. .+.. +.+..|++.+++.++..++..+..+|..
T Consensus 164 G~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 164 GNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 888887766543 1211 2344566666666666667777777754
No 168
>KOG0569|consensus
Probab=99.39 E-value=2.7e-12 Score=109.49 Aligned_cols=145 Identities=14% Similarity=0.061 Sum_probs=102.4
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhccc
Q psy17628 142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVG 221 (338)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (338)
+...++..+++++|+++.++++||+|||..+++..++..++.+++....... .....++..++.+...+..
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~---------~~e~li~GR~i~Gl~~gl~ 133 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAP---------SFEMLILGRLIVGLACGLS 133 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHHhHHH
Confidence 4556778899999999999999999999999998888888877776653322 2335566666777677766
Q ss_pred ccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHh-cccceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628 222 FGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTF-DDVERA-FGTGVAFGTFAVYCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 222 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
....+ .|+.|+.|.+.||....+......+|..++..+. +.+.+. ..|...+....+ ..+...+.+.+.||+.+
T Consensus 134 ~~~~p-myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i-~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 134 TGLVP-MYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLI-PALLQLALLPFLPESPK 209 (485)
T ss_pred HHHHH-HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHH-HHHHHHHHHhcCCCCcc
Confidence 66666 7999999999999988888888777777774444 333332 235433333333 33444455566899854
No 169
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.39 E-value=3.4e-11 Score=104.57 Aligned_cols=205 Identities=13% Similarity=0.119 Sum_probs=135.7
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
|++...+. +++.++..++..+..+|.++ +.++ .+++..-+..++++
T Consensus 176 ~~~~~~v~---~iv~~v~~~i~~~~~ke~~~------~~~~-------------------------~~~~~~~~~~~~~~ 221 (428)
T PF13347_consen 176 YRWMALVL---AIVGLVFFLITFFFVKERSV------EVTE-------------------------QEKKISLRDSLRSL 221 (428)
T ss_pred HHHHHHHH---HHHHHHHhhhhhheeeeccc------cccc-------------------------cccccccccchhhh
Confidence 88888888 77777767777777777211 0000 00111223456777
Q ss_pred HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 174 (338)
+++|.+++ .+....+... +........+++.+.. |.+ ...+.......+..+++.++.++++||+|+|+.+..
T Consensus 222 ~~nr~~~~-l~~~~~~~~~----~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~ 295 (428)
T PF13347_consen 222 FRNRPFRI-LLLAFFLQWL----AFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII 295 (428)
T ss_pred cccchHHH-HHHHHHHHHh----hhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence 77764332 2222222222 2334444556666654 433 556677778889999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCch-------hhhhHHHHHH
Q psy17628 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD-------VKGLALGVIC 247 (338)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~~~~~ 247 (338)
+..+.+++.+.+.+... .+.+..++...+.+.+.+... ..++++++|+.+.+ ..|..+|+.+
T Consensus 296 ~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~ 364 (428)
T PF13347_consen 296 GLLLAALGFLLLFFLGP----------GSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRREGMYFSVNS 364 (428)
T ss_pred hHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCchHHHHHhhh
Confidence 99998888777665421 233455555566666665544 55568999988743 3488899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Q psy17628 248 ILGSLIEFVVVKTFDDVERAFGTG 271 (338)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~ 271 (338)
+...++..+++.+.+.+++..|+.
T Consensus 365 ~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 365 FFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999888776654
No 170
>PRK10133 L-fucose transporter; Provisional
Probab=99.39 E-value=9e-12 Score=108.09 Aligned_cols=135 Identities=12% Similarity=-0.055 Sum_probs=102.4
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
......+.|.+.+++|.+..+.++..+...++..+++++.|+++||+|||+++..+..+.+++.+++.....
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~-------- 113 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-------- 113 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 456677888888888999999999999999999999999999999999999999999999888876532100
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDV 264 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (338)
..+....++...+.+.+.+....... .++.|..|.+.|...+++......+|..+++.+.+.+
T Consensus 114 -a~~~~~ll~~r~l~G~g~g~~~~~~~-~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 114 -IMNYTLFLVGLFIIAAGLGCLETAAN-PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred -cCCHHHHHHHHHHHHHHHHHHHhhHH-HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223444555566666665544444 5677877777777778888888888888888776543
No 171
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.39 E-value=3.4e-11 Score=101.89 Aligned_cols=165 Identities=18% Similarity=0.107 Sum_probs=110.0
Q ss_pred HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCc
Q psy17628 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169 (338)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 169 (338)
.+...++|+.++...+ .....+.+.+.......++.+.. |.+.............+.+++.++..++++|+|+|
T Consensus 228 ~~~~~~~Nrp~~~~l~-----~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk 302 (467)
T COG2211 228 SFLLIFKNRPLLLLLL-----MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK 302 (467)
T ss_pred HHHHHHccchHHHHHH-----HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH
Confidence 4456777764333322 22222223444444445554443 55666666677777777788899999999999999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCc-------hhhhhH
Q psy17628 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP-------DVKGLA 242 (338)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~ 242 (338)
+++..+.++.+++.+++.+.. .++....++..++.+.+.+ ...+++|++++|..+- +.-|..
T Consensus 303 ~~~~~~~~~~~i~~~~~~f~~----------~~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~ 371 (467)
T COG2211 303 KLFLIGLLLLAVGYLLLYFTP----------AGSVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIV 371 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhc----------CcchHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhH
Confidence 999999888888887776651 1122333333344444444 4466778899888543 223888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17628 243 LGVICILGSLIEFVVVKTFDDVERAFGTG 271 (338)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (338)
.|...++..++.+++..+.++.++..|+.
T Consensus 372 ~s~~tF~~K~g~ala~~~~g~~L~~~Gyv 400 (467)
T COG2211 372 YSGMTFFRKLGLALAGFIPGWILGAIGYV 400 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88899999999999999999988877753
No 172
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.38 E-value=4.7e-12 Score=109.07 Aligned_cols=169 Identities=15% Similarity=0.132 Sum_probs=118.5
Q ss_pred hhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc-----CCch-HHHHHhHHHHHHHHHHHH
Q psy17628 115 LSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-----GRRP-LLLISDICMAICIGALGY 188 (338)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~-~~~~~~~~~~~~~~~~~~ 188 (338)
.+..........+|.++++.|++.++.++....... .+..+++|+++||+ |||+ .+..+..+.+++...+.+
T Consensus 10 ~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~ 87 (402)
T PRK11902 10 ASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF 87 (402)
T ss_pred HHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh
Confidence 344446677788999999999999999988666665 68889999999999 7776 677777777666665544
Q ss_pred HHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q psy17628 189 YFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA- 267 (338)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 267 (338)
.. .....+.......+.+.+.+ ...+...+++.|.+|+++|+++.++......++..+++.+...+.+.
T Consensus 88 ~~---------~~~~~~~l~~~~~~~~~~~~-~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~ 157 (402)
T PRK11902 88 CP---------PHAALWPLAGLAVLVAFLSA-SQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV 157 (402)
T ss_pred cC---------ccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 20 00112222323233333333 33344447899999999999999999988888888888888888775
Q ss_pred cccceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628 268 FGTGVAFGTFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
.||+..|++.+++.++..+. .+..||++
T Consensus 158 ~gw~~~f~i~a~~~l~~~l~-~~~~~e~~ 185 (402)
T PRK11902 158 LGWGNTYLLMAGLMLAGALT-TLWAPEPE 185 (402)
T ss_pred cCHHHHHHHHHHHHHHHHHH-HHhcCCCc
Confidence 48999888877766655443 34466653
No 173
>PRK09669 putative symporter YagG; Provisional
Probab=99.38 E-value=1.3e-11 Score=107.65 Aligned_cols=118 Identities=10% Similarity=-0.023 Sum_probs=77.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccc
Q psy17628 143 YGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGF 222 (338)
Q Consensus 143 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (338)
.......+..+++.++.++++||+|+|+.+..+..+.++....+... . ..+.+..++...+.+.+.+..
T Consensus 268 ~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~i~g~~~~~~- 336 (444)
T PRK09669 268 LFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI---P-------PSNVWLIFALNILFNFIQNLT- 336 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---C-------cchHHHHHHHHHHHHHHHHHH-
Confidence 34445567777888899999999999999988766555433222221 0 112223333344444444433
Q ss_pred cccceeeeeccCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17628 223 GPIPGVMMGELFT-------PDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTG 271 (338)
Q Consensus 223 ~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (338)
.+..+++++|..+ .+..|...|+.++...++..+++.+.+.+.+..|+.
T Consensus 337 ~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 337 TPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3455578888875 233467788889999999999999999998887763
No 174
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.37 E-value=5.5e-12 Score=106.87 Aligned_cols=164 Identities=14% Similarity=0.053 Sum_probs=110.1
Q ss_pred HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc-----CCchHH-HHHhHHHHHHHHHHHHHHHHhh
Q psy17628 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-----GRRPLL-LISDICMAICIGALGYYFYLLK 194 (338)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~-~~~~~~~~~~~~~~~~~~~~~~ 194 (338)
.......|.+.++.|+|..+.++.... .+...+ .++.|+++||+ |||+.+ +.+.+..+++...+++.. .
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---~ 79 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---P 79 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC---c
Confidence 345567788899999999998888654 444444 88999999998 898874 555555555544443320 0
Q ss_pred cccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Q psy17628 195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG----- 269 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 269 (338)
....+.......+.+.+.+ ...+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..+
T Consensus 80 ------~~~l~~l~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~ 152 (356)
T TIGR00901 80 ------STDLPLLAGLAFLIAFFSA-TQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGL 152 (356)
T ss_pred ------chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 0111222222223332322 2233333788999999999999999999999999999999888888777
Q ss_pred ---cceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628 270 ---TGVAFGTFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 270 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
|+..|++.+++.++..+..++..||++
T Consensus 153 ~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 153 ITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 888888777766665544444456643
No 175
>KOG0255|consensus
Probab=99.36 E-value=6.1e-12 Score=112.02 Aligned_cols=147 Identities=16% Similarity=0.112 Sum_probs=113.9
Q ss_pred ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHH
Q psy17628 134 TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI 213 (338)
Q Consensus 134 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (338)
...+.....+..++..++..+|+++.|.++||+|||++++.+.++..++.++.++. .+.....+..++
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a------------~~~~~~~~~Rfl 180 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA------------PNYWMFLIFRFL 180 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh------------CcHHHHHHHHHH
Confidence 34566677788999999999999999999999999999999999999998777765 223344444555
Q ss_pred HHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhcc
Q psy17628 214 YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP 293 (338)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (338)
.+++.+ +.....+.++.|+++++.|+.+..+ ......++.+++...+++.. +|++.+++......+..++ +++.|
T Consensus 181 ~G~~~~-~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~ 255 (521)
T KOG0255|consen 181 SGFFGS-GPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPP 255 (521)
T ss_pred HHhhcc-chhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccC
Confidence 554444 4445555899999999999999999 88888888888888888877 7888888877777666544 55455
Q ss_pred CCCC
Q psy17628 294 ETKN 297 (338)
Q Consensus 294 ~~~~ 297 (338)
|+++
T Consensus 256 Es~r 259 (521)
T KOG0255|consen 256 ESPR 259 (521)
T ss_pred cChH
Confidence 7643
No 176
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.36 E-value=3.2e-11 Score=103.99 Aligned_cols=185 Identities=18% Similarity=0.225 Sum_probs=113.3
Q ss_pred HHHhhhcchHHHHHhhHHHHHhc--cCCCCC----------cchhhHHHHHHHHHHHHHHHHhhhhcCC-chHHHHHhHH
Q psy17628 112 LCFLSFSGINVVIFYLKRILIAT--NSKIIS----------PNYGQNIVGFIQVIMTFFSSLLVDKAGR-RPLLLISDIC 178 (338)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~----------~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~ 178 (338)
..+..+.+++.+..|.+.+..+. +-++.+ ..+.....++...+.+++..++.+|+|+ |++..++.++
T Consensus 266 vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~ 345 (477)
T TIGR01301 266 VTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNII 345 (477)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 33334445777777777766542 222211 1233445556666777778889999985 6777888777
Q ss_pred HHHHHHHHHHHHHHhhcc---c---c---hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCch--hhhhHHHHHH
Q psy17628 179 MAICIGALGYYFYLLKLD---E---K---LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD--VKGLALGVIC 247 (338)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~---~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~ 247 (338)
.++++....+.....++. + . ......+..++.+.+.++..+. ...++++++++..|++ ..|..+|+.|
T Consensus 346 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~-~~siPfal~s~~~~~~~~~~G~~mgilN 424 (477)
T TIGR01301 346 LAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAI-TYSIPFALASIRSSNLGAGQGLSMGVLN 424 (477)
T ss_pred HHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHH-HHHHhHHHHHHHccccCCCCcchhhHHH
Confidence 777777665442211100 0 0 0000024444555555555543 3456778899988854 4499999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc--eeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628 248 ILGSLIEFVVVKTFDDVERAFGTG--VAFGTFAVYCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
.+..+...+.....+.+.+..|-+ ..+.+.++..++++++.++.+|+++.
T Consensus 425 ~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 425 LAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999998888888777766666633 34445556666777777787887653
No 177
>KOG1330|consensus
Probab=99.36 E-value=6e-12 Score=104.29 Aligned_cols=229 Identities=13% Similarity=0.085 Sum_probs=119.1
Q ss_pred echhhhhhhcch-------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHH
Q psy17628 4 SGILYTYVIGSL-------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELD 76 (338)
Q Consensus 4 ~G~~~~~~i~~~-------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 76 (338)
+|..+|+.++.. |||.|.+. ++++++.+++.+++++|.+| +..++.. +++..
T Consensus 168 vGsglG~vvgs~va~~~~~Wr~af~~~---avl~vi~~~L~~~f~~eP~r-----ga~~~~~-------~~~~~------ 226 (493)
T KOG1330|consen 168 VGSGLGYVVGSVVASLTFWWRWAFRGS---AVLGVIVGLLVFLFVREPER-----GARDEVD-------GENKM------ 226 (493)
T ss_pred cccceeEEeeeeeccCccceEEEEEee---hHHHHHHHHHHHhhccCccc-----ccccccc-------cCCcC------
Confidence 444555555444 99999999 99999999999999999764 1111110 00000
Q ss_pred HHHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHH----HhccCCCCCcchhhHHHHHHH
Q psy17628 77 ELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRIL----IATNSKIISPNYGQNIVGFIQ 152 (338)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~ 152 (338)
.........+.+.+.+++.+....+-.....+. ...+..+.|.+. .-.|++..+..++..+...++
T Consensus 227 -----~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv-----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G 296 (493)
T KOG1330|consen 227 -----VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFV-----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGG 296 (493)
T ss_pred -----CCCccchHHHHHHHHccCceeeehHHHHHHHHh-----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhc
Confidence 000011112333344433222222222222221 223333444333 223667777778888899999
Q ss_pred HHHHHHHHHhhhhcCCc----hHHHHHhHHHHHHHHHHHHH-HHHhhcccchhhhhchHHHHHHHHHHHhhcccccccce
Q psy17628 153 VIMTFFSSLLVDKAGRR----PLLLISDICMAICIGALGYY-FYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPG 227 (338)
Q Consensus 153 ~~~~~~~g~l~d~~grr----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (338)
.+|.+++|.++||+.|+ ....+..+..+.+....... +..... .....+..++++.+........+.+..
T Consensus 297 ~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~----~~~s~~~~~il~~~g~~~~~~~~a~n~- 371 (493)
T KOG1330|consen 297 SLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF----TSSSMIFGLILFLVGETISWFNWATNN- 371 (493)
T ss_pred hhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHhccccccc-
Confidence 99999999999994321 22222222222221111110 000000 011222222222222333344455555
Q ss_pred eeeeccCCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q psy17628 228 VMMGELFTPDVKGLALGVICILGSL-IEFVVVKTFDDVERAF 268 (338)
Q Consensus 228 ~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 268 (338)
-+..|+.|++.|.+++++...+..+ |.+-.|++.|.+.++.
T Consensus 372 ~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 372 PIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred ceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 5788999999999999998777555 4444555888777643
No 178
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.34 E-value=3.3e-11 Score=96.94 Aligned_cols=178 Identities=15% Similarity=0.071 Sum_probs=118.7
Q ss_pred HHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc-CCchH
Q psy17628 93 VEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-GRRPL 171 (338)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~ 171 (338)
.+++++|. .+...+++..+...+|....|+|.++.|.|+|..+++...+...+.+++.++....+++|. .+|+.
T Consensus 202 ~~vw~~~~-----aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~ 276 (395)
T COG2807 202 RKVWRSPL-----AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPL 276 (395)
T ss_pred cccccCch-----hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 44667663 3333444444555588999999999999999999999999999999999999999999975 56666
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeecc-CCchhhhhHHHHHHHHH
Q psy17628 172 LLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL-FTPDVKGLALGVICILG 250 (338)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~r~~~~~~~~~~~ 250 (338)
.......+.++.+.+.+. .. ...+.. ..+++.+.+..+.... ..+.+- -.++..+.-.|+...++
T Consensus 277 ~~~~~~~~l~G~~G~~~~--P~---------~~~~lw--~~llG~G~G~~F~laL-~li~~rs~~a~~Aa~LSgmaQg~G 342 (395)
T COG2807 277 VVLALLLMLVGLVGLLLA--PG---------QLPILW--ALLLGLGQGGAFPLAL-TLILLRSSDAAIAAALSGMAQGVG 342 (395)
T ss_pred HHHHHHHHHHHHHHHHHh--hh---------hHHHHH--HHHHhCccchHHHHHH-HHHHhhcCChHHHHHHHHHhhhhh
Confidence 666666666666655543 11 111111 2344444443333222 344443 34455677788889999
Q ss_pred HHHHHHHHHHHHHHHHhcc-cceeehhhhHHHHHHHHHHH
Q psy17628 251 SLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVY 289 (338)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 289 (338)
++...++|+++|.+.|.+| |......+..+.++..+..+
T Consensus 343 YllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 343 YLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999887 43344444444444443333
No 179
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.34 E-value=1.7e-11 Score=105.23 Aligned_cols=163 Identities=12% Similarity=0.018 Sum_probs=100.8
Q ss_pred hHHHHHhhHHHH-HhccCCCCCcchhhHHHHH-HHHHHHHHHHHhhhhcCCchHHH-HHhHHHHHHHHHHHHHHHHhhcc
Q psy17628 120 INVVIFYLKRIL-IATNSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKAGRRPLLL-ISDICMAICIGALGYYFYLLKLD 196 (338)
Q Consensus 120 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 196 (338)
......+.|.++ ++.|.+..+.++..+...+ +...+.+.+++ +||+|||+.++ .+.+...+...+..+.
T Consensus 31 ~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~------- 102 (393)
T PRK15011 31 GALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN------- 102 (393)
T ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh-------
Confidence 344556666655 4569899998888765555 44555555666 99999998754 4444433444333332
Q ss_pred cchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceee
Q psy17628 197 EKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK--GLALGVICILGSLIEFVVVKTFDDVERAFGTGVAF 274 (338)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (338)
...+..++...+.+...+ ...+....+..|..+++.| +...++.+....++..++|.+.+.+.+..||+..|
T Consensus 103 -----~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f 176 (393)
T PRK15011 103 -----RNYFVLLFVGVFLSSFGS-TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMY 176 (393)
T ss_pred -----hHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHH
Confidence 111222222222232222 3333333455666555544 33446777788899999999999998889999988
Q ss_pred hhhhHHHHHHHHHHHhhccCCC
Q psy17628 275 GTFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
++.+...++..+..+++.||.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 177 LSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHHHHHHHHHHhhcCccC
Confidence 8887777777666666677653
No 180
>KOG2504|consensus
Probab=99.34 E-value=1.1e-11 Score=108.12 Aligned_cols=180 Identities=13% Similarity=0.065 Sum_probs=135.7
Q ss_pred chHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHH
Q psy17628 101 TVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA 180 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 180 (338)
+-|.+....++.........+.+..+.+.+.++.+.+..+.++..++......+..++.+.+.||+|.|.+.+.|.++..
T Consensus 43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence 33334444444433333334455566777888888788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q psy17628 181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKT 260 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 260 (338)
+++++..+. .+.....+..-.+.+.+.++.+.+.. +.+...|+ ++|+.++|+......+|.++.|.+
T Consensus 123 ~g~~lssF~-----------~~i~~l~lt~gvi~G~G~~~~~~pai-viv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l 189 (509)
T KOG2504|consen 123 LGLLLSSFA-----------TSLWQLYLTFGVIGGLGLGLIYLPAV-VILGTYFE-KKRALATGIAVSGTGVGTVVFPPL 189 (509)
T ss_pred HHHHHHHHH-----------hhHHHHHHHHHHHhhccchhhhcchh-hhhhhHhH-HHHHHHHhhhhccCCcceeeHHHH
Confidence 998887775 11222333344455566666666666 56665554 679999999999999999999999
Q ss_pred HHHHHHhcccceeehhhhHHHHHHHHHHHhhcc
Q psy17628 261 FDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP 293 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (338)
...+.+.+||+..+++++.+.+-..+....+.|
T Consensus 190 ~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 190 LKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999988888766666665555
No 181
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.33 E-value=1.4e-11 Score=105.89 Aligned_cols=168 Identities=13% Similarity=0.131 Sum_probs=103.2
Q ss_pred chHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhccc
Q psy17628 119 GINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDE 197 (338)
Q Consensus 119 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (338)
+......+.|.++++ .|.+..+.+...+...+...++.++.|+++||+|||+.++.+....++...............
T Consensus 17 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~- 95 (396)
T TIGR00882 17 IMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQ- 95 (396)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHH-
Confidence 355666677777765 599999999999999999999999999999999999999877665554433221110000000
Q ss_pred chhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhh
Q psy17628 198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTF 277 (338)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (338)
........+...+.+.+.+....... .+..|.. +.++...|.....+.+|..+++.+.+.+.+ .+|+..|++.
T Consensus 96 ---~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~ 168 (396)
T TIGR00882 96 ---SNILVGAIVGGLYLGFVFSAGAGAIE-AYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLG 168 (396)
T ss_pred ---HHHHHHHHHHHHHHHHHhccchhhHH-HHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHH
Confidence 00011112222233333333222222 3334432 233456677777788888889988876654 5888888877
Q ss_pred hHHHHHHHHHHHhhccC
Q psy17628 278 AVYCIIGTFFVYFVVPE 294 (338)
Q Consensus 278 ~~~~~~~~~~~~~~~~~ 294 (338)
+.+.++..++.+...++
T Consensus 169 ~~~~~~~~~~~~~~~~~ 185 (396)
T TIGR00882 169 SGFALILMLLLMFAKPK 185 (396)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 77776665554443333
No 182
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.33 E-value=7.2e-12 Score=106.10 Aligned_cols=146 Identities=13% Similarity=0.011 Sum_probs=106.4
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
+.......|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.+...++.+.. ..
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~---------- 84 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA---------- 84 (355)
T ss_pred cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh----------
Confidence 3445667888999999999999999999999999999999999999999999998877766655443 21
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cceeehhh
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG--TGVAFGTF 277 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 277 (338)
.+.+..++...+.+.+.+....... .++.|.+| ++|++++++.+....++..+++.+.+.+.+..+ |+..+...
T Consensus 85 --~~~~~l~~~~~~~g~g~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~ 160 (355)
T TIGR00896 85 --PGTALLFAGTALIGVGIAIINVLLP-SLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWW 160 (355)
T ss_pred --ccHHHHHHHHHHHHHHHHHHhccch-HHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 1123333444444444443333333 56677776 579999999999999999899888887776543 66666555
Q ss_pred hHH
Q psy17628 278 AVY 280 (338)
Q Consensus 278 ~~~ 280 (338)
+++
T Consensus 161 ~~~ 163 (355)
T TIGR00896 161 ALP 163 (355)
T ss_pred HHH
Confidence 443
No 183
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.33 E-value=5e-11 Score=102.54 Aligned_cols=131 Identities=12% Similarity=-0.022 Sum_probs=86.5
Q ss_pred HHHHhhHHHHHhcc--CCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 122 VVIFYLKRILIATN--SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 122 ~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
....+.+.+.++.+ .+................+|.++++++.||+++|+++.+...+..+..++....
T Consensus 250 ~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~---------- 319 (410)
T TIGR00885 250 MCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA---------- 319 (410)
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc----------
Confidence 45567777776543 232333445555667788999999999999999999888777776665555442
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF 268 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (338)
..........+.+++.+..+ |..++...+..+++.+..+.++.... +|+.+.|++.|.+.|..
T Consensus 320 ---~~~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 320 ---GGHVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred ---CChHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence 11122344445555555555 44447788888876654444444433 89999999999999954
No 184
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.33 E-value=3e-10 Score=99.67 Aligned_cols=135 Identities=14% Similarity=0.072 Sum_probs=81.4
Q ss_pred hHHHHHhhHHHHHhc-cCCC---CCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHH-HHHhHHHHHHHHHHHHHHHHhh
Q psy17628 120 INVVIFYLKRILIAT-NSKI---ISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLL-LISDICMAICIGALGYYFYLLK 194 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~-g~~~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~-~~~~~~~~~~~~~~~~~~~~~~ 194 (338)
++....+.|...... +-+. ...++.....+++..++.++.|.+..+++|-|.. +++..++.+++.+++.. ..
T Consensus 326 ~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~-~~-- 402 (599)
T PF06609_consen 326 FFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV-RP-- 402 (599)
T ss_pred HHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc-cC--
Confidence 444444555544433 4333 2567778888889999999999999988876655 45555554443333322 11
Q ss_pred cccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE 265 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (338)
++....+....+.+++.+....+.. ....-..|++.-|++.|+...+..+|+.++..++..+.
T Consensus 403 -------~n~~~~i~~~~l~g~giG~~~~~~~-~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 403 -------DNKNAAIAFLVLAGFGIGGILVPAI-VIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred -------CCcchHHHHHHHHHHhHHHHHHHHH-HeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1111223333344444443333333 44555678899999999999999998888877665443
No 185
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.32 E-value=2.6e-11 Score=106.71 Aligned_cols=165 Identities=14% Similarity=0.099 Sum_probs=112.4
Q ss_pred chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc-----CCchH-HHHHhHHHHHHHHHHHHHHHH
Q psy17628 119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-----GRRPL-LLISDICMAICIGALGYYFYL 192 (338)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~-~~~~~~~~~~~~~~~~~~~~~ 192 (338)
.........|.++++.|.+..+.+....+. .. .++.+++|+++||+ |||+. +..+.+..+++...+++..
T Consensus 27 ~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~-~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~-- 102 (491)
T PRK11010 27 PLALTSGTLQAWMTVENIDLKTIGFFSLVG-QA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLE-- 102 (491)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcC--
Confidence 355666778888888888887777753222 22 26889999999999 99985 5566666656655554420
Q ss_pred hhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcccc
Q psy17628 193 LKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER-AFGTG 271 (338)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 271 (338)
...+.+.......+.+++.+. ..+...++..|.+|+++|+++.++......+|..+++.+...+.+ ..||+
T Consensus 103 -------~~~~l~~l~~~~~l~~~~~a~-~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr 174 (491)
T PRK11010 103 -------PGTQLRWLAALAVVIAFCSAS-QDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQ 174 (491)
T ss_pred -------CcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 011122333333344444443 333334789999999999999999999999999999988888888 46999
Q ss_pred eeehhhhHHHHHHHHHHHhhccCCC
Q psy17628 272 VAFGTFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
..|++.+++.++..+..+ +.||+.
T Consensus 175 ~~f~i~a~l~ll~~l~~~-~~~e~~ 198 (491)
T PRK11010 175 GMYWLMAALLIPCIIATL-LAPEPT 198 (491)
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCCc
Confidence 999888877666654433 467753
No 186
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.32 E-value=1.2e-11 Score=108.06 Aligned_cols=134 Identities=8% Similarity=-0.058 Sum_probs=99.2
Q ss_pred hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHH
Q psy17628 133 ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA 212 (338)
Q Consensus 133 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (338)
..|+++.+.+......+++.+++..+.+++.+|++.|+++.++.++.+++...........+.. ......+.......
T Consensus 282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~--~gi~~~~~~~~~~~ 359 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLA--FGISDEVFVLGDSI 359 (468)
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccc--cCCCCeeeeeehhH
Confidence 4699999999999999999999999999999999999999998888877664432111000000 00011122233334
Q ss_pred HHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17628 213 IYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG 269 (338)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (338)
+...+.+..+.+.. .++.+..|++.+|+.+++.+.+.+++..+++.+.+.+.+..|
T Consensus 360 l~~~~~g~~~~~~~-~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 360 IAEVLAQLKFMPFL-VLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHccHH-HHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44555556666665 789999999999999999999999999999988888888777
No 187
>PRK11462 putative transporter; Provisional
Probab=99.31 E-value=1e-10 Score=102.15 Aligned_cols=119 Identities=11% Similarity=-0.039 Sum_probs=71.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcc
Q psy17628 141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV 220 (338)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (338)
.+.......+..+++.+++++++||+|+|+.+..+..+..+..+++.+. .. ......++...+.+.+. .
T Consensus 265 ~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~l~g~~~-~ 333 (460)
T PRK11462 265 FVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV---PM-------QASITMFVFIFVIGVLH-Q 333 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---ch-------hHHHHHHHHHHHHHHHH-H
Confidence 3455667778888999999999999999988765554443333222211 00 01112222223333333 2
Q ss_pred cccccceeeeeccCC-----chhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628 221 GFGPIPGVMMGELFT-----PDVK--GLALGVICILGSLIEFVVVKTFDDVERAFGT 270 (338)
Q Consensus 221 ~~~~~~~~~~~e~~p-----~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (338)
...+..+++++|..+ +..| |...+...+...++..+++.+.+.+++..|+
T Consensus 334 ~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 334 LVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 233444466676655 2234 5555666688899999999998888876665
No 188
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.29 E-value=6.1e-11 Score=115.39 Aligned_cols=144 Identities=15% Similarity=0.042 Sum_probs=96.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcc
Q psy17628 141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV 220 (338)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (338)
.++..++..+..++.++++|+++||+|||+++........+........... .+.+..+++.++.+.+.+.
T Consensus 54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~---------~s~~~l~~~~~l~gi~~a~ 124 (1140)
T PRK06814 54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL---------NSVPLLFAALFLMGIHSAL 124 (1140)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHh
Confidence 4566667788889999999999999999997644222222222111111110 1233444555555554443
Q ss_pred cccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCC
Q psy17628 221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET 295 (338)
Q Consensus 221 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (338)
..+...+++.|++|++.|+.++|+.++...++..++|.+.+.+....+|+..| +..++..+..++..+.++++
T Consensus 125 -~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 125 -FGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred -hchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCC
Confidence 44555589999999999999999999999999999999999999988887776 33333333344444556654
No 189
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.28 E-value=8.4e-11 Score=114.70 Aligned_cols=117 Identities=13% Similarity=0.065 Sum_probs=86.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcc
Q psy17628 141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV 220 (338)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (338)
.++..++..++.+++++++|+++||+|||++++.+.++.++..++..+.... ...+..++..++.+++.+.
T Consensus 49 ~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~~~~~ 119 (1146)
T PRK08633 49 TAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL---------GWFWLAFAVTFLLGAQSAI 119 (1146)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH---------ccHHHHHHHHHHHHHHHHh
Confidence 4667778888899999999999999999999998877665555544332111 1223444444555555444
Q ss_pred cccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17628 221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA 267 (338)
Q Consensus 221 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (338)
. .+...++++|++|++.|+.++|+......+|..+++.+.+.+.+.
T Consensus 120 ~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 120 Y-SPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred h-chHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 344448999999999999999999999999999999998888765
No 190
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.27 E-value=9.6e-11 Score=95.73 Aligned_cols=174 Identities=12% Similarity=0.087 Sum_probs=117.6
Q ss_pred HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCc
Q psy17628 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169 (338)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 169 (338)
...+++++|+.+.-. +..++... .-.....+++.++.+ .|.+..+.....+....+.++|.+++.++..|+...
T Consensus 228 ~~~~l~~~~~~~~gv-l~~FlYVG----~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~ 302 (422)
T COG0738 228 GLSSLFQNKHLRLGV-LAIFLYVG----AEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE 302 (422)
T ss_pred hHHHHHhChHHHHHH-HHHHHHHh----HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 467788887433322 22222222 234567788888888 588999999999999999999999999999999999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHH
Q psy17628 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL 249 (338)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 249 (338)
+.+.+..++..+.++...+. +..+.+....+.+.+.+..+..+. +...+..|.+ ....|.....
T Consensus 303 k~Laf~a~~~ill~~~~~l~-------------~g~v~~~~l~~ig~F~simfPTIf-slal~~l~~~--ts~~s~~l~m 366 (422)
T COG0738 303 KYLAFYALIAILLLLAVALI-------------GGVVALYALFLIGLFNSIMFPTIF-SLALKNLGEH--TSVGSGLLVM 366 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------------cChHHHHHHHHHHHHhHHHHHHHH-HHHHhccCcc--ccccceeeee
Confidence 98888766665555555443 223444455556666665555444 7777778733 2333444555
Q ss_pred HHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHH
Q psy17628 250 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT 285 (338)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (338)
..+|+++.|++.|++.|..|....+.....+|.+..
T Consensus 367 aivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 367 AIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred heecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 667889999999999999887665554444444443
No 191
>KOG0254|consensus
Probab=99.26 E-value=3.9e-11 Score=106.43 Aligned_cols=142 Identities=12% Similarity=0.130 Sum_probs=113.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcc
Q psy17628 141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV 220 (338)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (338)
.+++.+...++..+++++.|+++|++|||+.++.+.+...++.++.+.. .+....++...+.+++.+.
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a------------~~~~~l~~GR~l~G~g~G~ 158 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA------------PSWYQLIVGRILTGLGVGG 158 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHhccchhh
Confidence 3799999999999999999999999999999999999999999988876 2345666777788877777
Q ss_pred cccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628 221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF--GTGVAFGTFAVYCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 221 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
.....+ .+.+|+.|++.||...+.......+|..++ .+.+....+. +||..+.+..+.+++..+. .+++||+.+
T Consensus 159 ~~~~~p-iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~ 234 (513)
T KOG0254|consen 159 ASVLAP-VYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPR 234 (513)
T ss_pred hhhcch-hhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChH
Confidence 776666 899999999999999998888777665555 6666555543 7887776666666666655 777888743
No 192
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.25 E-value=7.8e-11 Score=103.30 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=111.6
Q ss_pred HHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhh
Q psy17628 124 IFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGL 203 (338)
Q Consensus 124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (338)
..-.+.+..+..-|+...++......+-.++.++++|.++||+.||++++.+-++.++....+.+...... .+
T Consensus 30 ~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~-------~~ 102 (524)
T PF05977_consen 30 TVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGL-------LS 102 (524)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCc-------CC
Confidence 33344444455447777888888888999999999999999999999999998887776665554422221 12
Q ss_pred chHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHH
Q psy17628 204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCII 283 (338)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (338)
.+..+++.++.+.+.+. ..|...+.+.|+.|+++...++++.....++...++|.+.|.++...|....|.+-++..++
T Consensus 103 ~~~Ll~~~fl~g~~~a~-~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~ 181 (524)
T PF05977_consen 103 PWLLLILTFLLGIGSAF-FNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLI 181 (524)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444444444443 34444488999999999999999999999999999999999998888877777766555444
Q ss_pred HH
Q psy17628 284 GT 285 (338)
Q Consensus 284 ~~ 285 (338)
..
T Consensus 182 ~i 183 (524)
T PF05977_consen 182 SI 183 (524)
T ss_pred HH
Confidence 43
No 193
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.24 E-value=1.3e-10 Score=99.76 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceee
Q psy17628 150 FIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVM 229 (338)
Q Consensus 150 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (338)
+...+++++.|+++||+|||+.+..+.++..++.+++.......... .......++...+.+.+.+....... .+
T Consensus 46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~-~~ 120 (394)
T TIGR00883 46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIG----IWAPILLLLARLIQGFSLGGEWGGAA-LY 120 (394)
T ss_pred HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhH----HHHHHHHHHHHHHHHhhccccccccH-HH
Confidence 34456889999999999999999999988888877666541110000 00001233334444444443333344 78
Q ss_pred eeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HhcccceeehhhhHHHHHHHHHHHhhccCC
Q psy17628 230 MGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE--------RAFGTGVAFGTFAVYCIIGTFFVYFVVPET 295 (338)
Q Consensus 230 ~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (338)
+.|.+|+++|+...++......+|..+++.+...+. +..+|+..+.+.+.+.++.. +.....+|+
T Consensus 121 ~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~ 193 (394)
T TIGR00883 121 LAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL-YLRRNLEET 193 (394)
T ss_pred hhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH-HHHHhcCCC
Confidence 999999999999999988888888888777655432 34678777766554444333 223334543
No 194
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.24 E-value=1e-10 Score=100.05 Aligned_cols=148 Identities=14% Similarity=0.118 Sum_probs=101.4
Q ss_pred chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHH-HHHHHHHHHHHHhhccc
Q psy17628 119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA-ICIGALGYYFYLLKLDE 197 (338)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 197 (338)
+......++|.++++.|++..+.++..+...+...+++++.|.++||+||+........... +..+.+...
T Consensus 19 ~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~-------- 90 (382)
T TIGR00902 19 AYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAG-------- 90 (382)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 35567788899999999999999999999999999999999999999998644322211111 111111100
Q ss_pred chhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhh
Q psy17628 198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTF 277 (338)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (338)
.++.+..++...+.+.+.+.. .+...++..+. .++|+..+|.....+.+|..++|.+.+.+.+..||+..+.+.
T Consensus 91 ---~~~~~~l~~~~~l~~~~~~~~-~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~ 164 (382)
T TIGR00902 91 ---AHNAWLLFIAIGLFALFFSAG-MPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL 164 (382)
T ss_pred ---hhhHHHHHHHHHHHHHHHccc-hhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 112233334444444444433 33333444442 467899999999999999999999999999999999887765
Q ss_pred hHH
Q psy17628 278 AVY 280 (338)
Q Consensus 278 ~~~ 280 (338)
..+
T Consensus 165 ~~~ 167 (382)
T TIGR00902 165 TAG 167 (382)
T ss_pred HHH
Confidence 544
No 195
>KOG2533|consensus
Probab=99.23 E-value=1.1e-10 Score=100.89 Aligned_cols=153 Identities=16% Similarity=0.031 Sum_probs=118.0
Q ss_pred HhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHH
Q psy17628 132 IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASL 211 (338)
Q Consensus 132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (338)
++.+....+.+...+++.++.+++.++++.+.||++-.+.+....++.++..++.... .+.+..++..
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~------------~s~~~~ialr 141 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV------------HSFPGLIALR 141 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH------------hhhHHHHHHH
Confidence 4456677788999999999999999999999999995555444433333333222221 1234556667
Q ss_pred HHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HhcccceeehhhhHHHHHHH
Q psy17628 212 AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE------RAFGTGVAFGTFAVYCIIGT 285 (338)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 285 (338)
++.+.+-+.++.+.. .+++.++.++.|++-+|+.+....+|+++++.+...+. ...||++.|++-+++.++..
T Consensus 142 ~llGl~es~~wP~~~-~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~g 220 (495)
T KOG2533|consen 142 FLLGLFESGGWPGVV-AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLG 220 (495)
T ss_pred HHHHHHhcccchHHH-HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHH
Confidence 777777777777776 79999999999999999999999999988888776642 35789999999999999999
Q ss_pred HHHHhhccCCCC
Q psy17628 286 FFVYFVVPETKN 297 (338)
Q Consensus 286 ~~~~~~~~~~~~ 297 (338)
+++++++|+...
T Consensus 221 i~~f~~lp~~P~ 232 (495)
T KOG2533|consen 221 IVVFFFLPDNPS 232 (495)
T ss_pred heEEEEecCChh
Confidence 999998987544
No 196
>KOG4686|consensus
Probab=99.23 E-value=1.4e-10 Score=90.12 Aligned_cols=136 Identities=14% Similarity=0.015 Sum_probs=99.4
Q ss_pred hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
+..+....|.++++. |+|+..++.+.+.....+.+.+++.|.++||+|++...+.+..+..+..-....+
T Consensus 280 ~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--------- 350 (459)
T KOG4686|consen 280 WFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--------- 350 (459)
T ss_pred HHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh---------
Confidence 556666777777765 9999999999999999999999999999999999988877655544433222221
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG 269 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (338)
..+...+.+.+.+..++.. ....|..++.+.|+++-|++.|.+..+.++|-.+.|.+.+.+.++.|
T Consensus 351 ----t~lsPy~~m~~lGLsysll-AcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 351 ----TFLSPYTSMTFLGLSYSLL-ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred ----hhccHHHHHHHHhhhHHHH-HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 0111233334444333322 22345667778899999999999999999999999999999988766
No 197
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.20 E-value=5.7e-11 Score=103.64 Aligned_cols=169 Identities=14% Similarity=0.067 Sum_probs=108.7
Q ss_pred HHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh----cCCch-HHHHHhHHHHHHHHHHHHHHHHhh
Q psy17628 121 NVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRP-LLLISDICMAICIGALGYYFYLLK 194 (338)
Q Consensus 121 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~~~~~~~~~~~~~~~~~~~~~~~~ 194 (338)
.....|++.++.+ .|.++.+.+...++..+...+..++.|+++|| +|||+ .++.+....+++.+++.... +
T Consensus 16 ~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~---~ 92 (437)
T TIGR00792 16 AIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTP---D 92 (437)
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCC---C
Confidence 3445556665554 59999999999999999999999999999997 67755 56666666666655443321 0
Q ss_pred cccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q psy17628 195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTFDDVER------- 266 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 266 (338)
.. .........+...++..+.+....+.. ++.+|.. ++++|++..++......+|+.+++.+.+.+..
T Consensus 93 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~ 168 (437)
T TIGR00792 93 FS---ATGKLVYAYITYILLGLFYSFVNIPYW-SLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDD 168 (437)
T ss_pred CC---cchHHHHHHHHHHHHHHHHHhhcccHh-hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 00 001112223333344444444333443 6777876 56889999998888887877766665555443
Q ss_pred hcccceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628 267 AFGTGVAFGTFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
..+|+..+.+.+++..+..++.++..||++
T Consensus 169 ~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 169 KFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 346766777777777666666666666653
No 198
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.19 E-value=2.5e-10 Score=97.67 Aligned_cols=161 Identities=10% Similarity=0.035 Sum_probs=103.7
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhH-HHHHHHHHHHHHHHHhhcccc
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDI-CMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 198 (338)
......++|.++++.|.|..+.+...+...+...+++++.|.++||+|||....-... ...+... ... ..
T Consensus 20 ~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~--~~~--~~----- 90 (382)
T PRK11128 20 YGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAV--AFW--FG----- 90 (382)
T ss_pred HHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHH--HHH--Hh-----
Confidence 4567778889999999999999999999999999999999999999999532211111 1111111 111 00
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA 278 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
.++.+..++...+.+.+.+.. .+...++..+. .+.|+.+.+.....+.++..++|.+.+.+.+.+||+..+++.+
T Consensus 91 --~~~~~~l~i~~~l~g~~~~~~-~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~ 165 (382)
T PRK11128 91 --AHSFWLLFVAIGLFNLFFSPL-VPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILT 165 (382)
T ss_pred --cccHHHHHHHHHHHHHHHccc-ccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence 112233333334444443333 33332444544 3557888888888899999999999999999999998887666
Q ss_pred HHHHHHHHHHHhhccCC
Q psy17628 279 VYCIIGTFFVYFVVPET 295 (338)
Q Consensus 279 ~~~~~~~~~~~~~~~~~ 295 (338)
+..++.. +..+..||.
T Consensus 166 ~~~~~~~-~~~~~~~~~ 181 (382)
T PRK11128 166 AGVASML-LGQLLRPTI 181 (382)
T ss_pred HHHHHHH-HHHHccCCC
Confidence 5443333 333334443
No 199
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.19 E-value=1.5e-13 Score=120.35 Aligned_cols=146 Identities=14% Similarity=0.147 Sum_probs=104.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcc
Q psy17628 141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV 220 (338)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (338)
.++..+...++..+|++++|+++||+|||+.+..+..+..++.++..+.... .+.+...+...+.+++.+.
T Consensus 48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~---------~~~~~~~~~R~~~G~~~g~ 118 (451)
T PF00083_consen 48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY---------NNFWMLLIGRFLIGFGIGG 118 (451)
T ss_pred HHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc---------ccccccccccccccccccc
Confidence 4567888899999999999999999999999999999998888877765110 1334555556666666665
Q ss_pred cccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HhcccceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628 221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE---RAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 221 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
...... .++.|..|++.|+...++......+|..++..+..... +..+|+..+.+..+..++.. +..+++||+.+
T Consensus 119 ~~~~~~-~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~-~~~~~~pESP~ 196 (451)
T PF00083_consen 119 AYVVSP-IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVL-LLRFFLPESPR 196 (451)
T ss_pred cccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 555555 89999999999999988877777666555544432222 22348777766666655544 44466899743
No 200
>KOG0252|consensus
Probab=99.15 E-value=4.2e-10 Score=93.37 Aligned_cols=108 Identities=16% Similarity=0.054 Sum_probs=76.5
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHH
Q psy17628 136 SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYI 215 (338)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (338)
++....+.+.....++.++|+++.|++.||+|||+++...++++.++.++++........ .....+......+++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~-----~~~m~~L~~~R~~LG 155 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSP-----LGVMMTLCFFRFLLG 155 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCC-----cchhhHHHHHHHHhh
Confidence 344455677888899999999999999999999999999999999998855543111111 122334444455666
Q ss_pred HhhcccccccceeeeeccCCchhhhhHHHHHHHH
Q psy17628 216 IVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL 249 (338)
Q Consensus 216 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 249 (338)
++.+. -.|+..+.++|....+.||+-.+.....
T Consensus 156 iGIGG-DYPlSAtI~SE~an~~~RGa~iaavFa~ 188 (538)
T KOG0252|consen 156 IGIGG-DYPLSATIMSESANKKTRGAFIAAVFAM 188 (538)
T ss_pred ccccC-CCcchHHHhhhhhhhccccceeEEEEEe
Confidence 66554 4555558999999999999887764333
No 201
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.15 E-value=6.9e-11 Score=99.36 Aligned_cols=181 Identities=17% Similarity=0.117 Sum_probs=124.3
Q ss_pred HHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHH-HHhcc----CCCCCcchhhHHHHHHHHHHHHHHHHhhhh-cCC
Q psy17628 95 IYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRI-LIATN----SKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGR 168 (338)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr 168 (338)
.+++| +.+..++..-+.-.++ +|++...+..| ..+.+ ++.+++......+....-+..+++||++|| +|+
T Consensus 16 ~f~~P---r~l~~if~vE~WERFs-yYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~ 91 (498)
T COG3104 16 FFGQP---RGLYLIFFVELWERFS-YYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGT 91 (498)
T ss_pred cCCCC---chHHHHHHHHHHHHHh-hhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 44444 3455555555555554 33333333333 33334 888888777777777777888999999999 599
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchh--hhhHHHHH
Q psy17628 169 RPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV--KGLALGVI 246 (338)
Q Consensus 169 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~ 246 (338)
|+.++.+.++++++.++++... ........+.+.+...+.+..=.... +++.|++|++. |-.+.++.
T Consensus 92 ~~tI~lGail~~iGh~~L~~~~----------~~~~~gl~i~L~~I~iG~Gl~K~NiS-~llg~ly~~~DprrD~gFt~f 160 (498)
T COG3104 92 RRTIVLGAILMAIGHLVLAISS----------VSGPGGLYIGLALIIVGTGLFKPNIS-SLLGELYPKDDPRRDGGFTLF 160 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhccc----------cccccHHHHHHHHHHhccccccccHH-HHHHHhcCCCCcccCCCccEE
Confidence 9999999999999998887641 01223334444444455544434444 78899987643 66778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHh
Q psy17628 247 CILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYF 290 (338)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (338)
++..++|+.+.|.+.+++.+.+||...|...++-..++.+..+.
T Consensus 161 Y~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~ 204 (498)
T COG3104 161 YMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLL 204 (498)
T ss_pred EEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999988887776666655544433
No 202
>KOG2563|consensus
Probab=99.13 E-value=2.4e-09 Score=88.92 Aligned_cols=188 Identities=16% Similarity=0.233 Sum_probs=111.3
Q ss_pred hhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCC
Q psy17628 89 KKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGR 168 (338)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr 168 (338)
..+.++.++++. ++...+.+......++...+.+...+...|++...+|.......+++++++.+.|.+.||.+.
T Consensus 256 ~~si~~~~~n~~-----F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~ 330 (480)
T KOG2563|consen 256 PKSIKSCFKNRQ-----FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKK 330 (480)
T ss_pred HHHHHHHHcCcc-----HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 346777888763 222222222222223344444443444457777889999999999999999999999999876
Q ss_pred chHH-HHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHH
Q psy17628 169 RPLL-LISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVIC 247 (338)
Q Consensus 169 r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 247 (338)
-+.. ++......++. ++....... ....++......+++ .+..+..|+..-+..|..-+..-++..|+.+
T Consensus 331 fk~~~~v~~~~~~v~~-~~l~~~t~~-------~~~~viv~~t~~~~g-~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~ 401 (480)
T KOG2563|consen 331 FKLTTLVLYLFALVGT-LMLLTCTLF-------LGDSVIVFTTCGLLG-FFGTGYLPIGFELGVETTYPVAEGTSSGLLN 401 (480)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhhcc-------CCceEehhhhHHHHH-HhhcCCCCcceeeeeeeccccCCcccceeEE
Confidence 5443 33333333331 222211111 112333333333343 4445666777788888865566788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc---cceeehh-hhHHHHHHHHHHHh
Q psy17628 248 ILGSLIEFVVVKTFDDVERAFG---TGVAFGT-FAVYCIIGTFFVYF 290 (338)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~ 290 (338)
..+++-+.+...+.+...+..+ |..+..+ ....+.+..++..+
T Consensus 402 ~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~ 448 (480)
T KOG2563|consen 402 LSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAF 448 (480)
T ss_pred eehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhh
Confidence 9999988888888888777665 2333333 44444444444444
No 203
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.10 E-value=1.2e-09 Score=93.70 Aligned_cols=175 Identities=15% Similarity=0.052 Sum_probs=109.8
Q ss_pred HHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhh--HHHHHHHHHHHHHH-HHhhhhcCCchHHHHHhHHHHH-HHHHH
Q psy17628 111 LLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQ--NIVGFIQVIMTFFS-SLLVDKAGRRPLLLISDICMAI-CIGAL 186 (338)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~-g~l~d~~grr~~~~~~~~~~~~-~~~~~ 186 (338)
..++.+...+.....+.|.++++.|.+..+.+... ....+...+.+++. ++.+||+|||+..++...+... +...+
T Consensus 8 ~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~ 87 (390)
T TIGR02718 8 LLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASL 87 (390)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHH
Confidence 33444555567788899999999999999999863 56677787777777 5579999999987655433222 22222
Q ss_pred HHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 187 GYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER 266 (338)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (338)
... ... .....+.+........+ .....+..-.+..|..+++.++...+.......+|..+++...+.+.+
T Consensus 88 ~~~--~~~------~~~~~~~~~~~~~~~~~-~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~ 158 (390)
T TIGR02718 88 ALV--GPD------VAGAGWAVGLLACASLA-SATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG 158 (390)
T ss_pred HcC--Ccc------hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 000 01111222222222222 222222222456677777777777777777778888888888888889
Q ss_pred hcccceeehhhhHHHHHHHHHHHhhccC
Q psy17628 267 AFGTGVAFGTFAVYCIIGTFFVYFVVPE 294 (338)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (338)
..||+..|++.+++.++..+..++..++
T Consensus 159 ~~gw~~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 159 KFGQRPAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999988888777666555443333
No 204
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=99.10 E-value=5e-10 Score=87.86 Aligned_cols=165 Identities=13% Similarity=0.029 Sum_probs=109.2
Q ss_pred chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
..+.+..|.|.+.+..|++..+.+.+.....++..+ .++.|.+.|++|.+.++.+|.+...++..++........
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i---- 91 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI---- 91 (250)
T ss_pred cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc----
Confidence 356788999999999999999999999999999876 488999999999999999999998888877655432211
Q ss_pred hhhhhchHHHHHHHHHHHhhccccc-ccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFG-PIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTF 277 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (338)
...+.+.+..... ..+.+..+. ........+.||. .||++.|+.-....+++.+...+...+.+. +....+.+.
T Consensus 92 --~~~~~~~~~~~~~-l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~l 166 (250)
T PF06813_consen 92 --PSLPVWLMCLFLF-LGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFL 166 (250)
T ss_pred --CccchHHHHHHHH-HHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHH
Confidence 1122222222222 222222221 2211334577885 799999999999999988888877666544 222233344
Q ss_pred hHHHHHHHHHHHhhcc
Q psy17628 278 AVYCIIGTFFVYFVVP 293 (338)
Q Consensus 278 ~~~~~~~~~~~~~~~~ 293 (338)
+....+..++..++++
T Consensus 167 a~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 167 AVLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHHHHHHHHHhhhee
Confidence 4444444444444443
No 205
>PRK09669 putative symporter YagG; Provisional
Probab=99.03 E-value=4.5e-10 Score=98.08 Aligned_cols=168 Identities=14% Similarity=0.116 Sum_probs=102.0
Q ss_pred HHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhh----cCCch-HHHHHhHHHHHHHHHHHHHHHHhh
Q psy17628 121 NVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRP-LLLISDICMAICIGALGYYFYLLK 194 (338)
Q Consensus 121 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~~~~~~~~~~~~~~~~~~~~~~~~ 194 (338)
.....|++.++.+. |++....+....+.-+...+..++.|+++|| +|||+ .++.+.+..+++.+++... ..
T Consensus 26 ~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~---p~ 102 (444)
T PRK09669 26 QTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYT---PD 102 (444)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhC---CC
Confidence 34455666666654 9999999999999999999999999999998 67754 4555656655555433221 10
Q ss_pred cccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh------
Q psy17628 195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTFDDVERA------ 267 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 267 (338)
.. ......+..+...++..+++....|.. ++.+|+. ++++|.+..+.......+|+.+++.+...+...
T Consensus 103 ~~---~~~~~~~~~~~~~l~~~~~t~~~ip~~-al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~ 178 (444)
T PRK09669 103 FG---ATGKIIYACVTYILLSLVYTAINVPYC-AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDE 178 (444)
T ss_pred CC---cchHHHHHHHHHHHHHHHHHhhcchHH-HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 00 011122333333344444444444444 6788887 557899888887777777777766554444332
Q ss_pred -cccceeehhhhHHHHHHHHHHHhhccCC
Q psy17628 268 -FGTGVAFGTFAVYCIIGTFFVYFVVPET 295 (338)
Q Consensus 268 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (338)
.+|+..+.+++++..+..+++++..+|.
T Consensus 179 ~~g~~~~~~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 179 QKGYFYAMMVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence 2344445555555555554455544543
No 206
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.97 E-value=6.6e-08 Score=84.96 Aligned_cols=148 Identities=10% Similarity=0.013 Sum_probs=92.8
Q ss_pred cchhhHHHHHHHHHHHHHHHH----hhhh-cCCchHH--HHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHH
Q psy17628 141 PNYGQNIVGFIQVIMTFFSSL----LVDK-AGRRPLL--LISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI 213 (338)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~g~----l~d~-~grr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (338)
.+++.++..+.-++..++..+ +.|| .+.+... .+|.++.+++...+++.....+.+ ...+.++.+....+
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~---~~~s~~~~i~~~~~ 390 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAG---GLTSPWFMVLIYLF 390 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CccCHHHHHHHHHH
Confidence 456777777777777766554 4443 2223333 567777777766655432111110 11234445555555
Q ss_pred HHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhc
Q psy17628 214 YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVV 292 (338)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (338)
.+.+-... .+...+++.+..|++.||+.+|+......+|..+++.+.....+..++...+...+.+.+++.++.++..
T Consensus 391 ~~~ge~~~-~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 391 QTLGELMI-SPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred HHHHHHHH-hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 55554443 4444488999999999999999999999999988888877666665666666666666666655555433
No 207
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.96 E-value=2.9e-09 Score=93.68 Aligned_cols=138 Identities=12% Similarity=0.093 Sum_probs=89.1
Q ss_pred hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhh----hcCC-chHHHHHhHHHHHHHHHHHHHHHHh
Q psy17628 120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVD----KAGR-RPLLLISDICMAICIGALGYYFYLL 193 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~ 193 (338)
......|++.++++. |++....+.+..+.-+...+..++.|+++| |+|| |+.++.+....+++..++... .
T Consensus 22 ~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~---p 98 (473)
T PRK10429 22 IGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA---H 98 (473)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC---C
Confidence 445566777777776 999999999999999999999999999999 5698 455556666665554443221 1
Q ss_pred hcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTFDDV 264 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (338)
+.. ......+..+...++..+++....+.. ++.+|+. ++++|....+.....+.+++.+.+.+...+
T Consensus 99 ~~~---~~~~~~~~~~~~~l~~~~~t~~~ip~~-al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~ 166 (473)
T PRK10429 99 LFE---GTAQYVFVCVTYILWGMTYTIMDIPFW-SLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPF 166 (473)
T ss_pred CCC---ccHHHHHHHHHHHHHHHHHHHHcchHH-hhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000112233333344445555444554 7788987 588899988886676777666655544433
No 208
>KOG3764|consensus
Probab=98.96 E-value=1.2e-09 Score=89.15 Aligned_cols=237 Identities=13% Similarity=0.033 Sum_probs=139.3
Q ss_pred Cceechhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHH
Q psy17628 1 MVVSGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGE 74 (338)
Q Consensus 1 ~~~~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~ 74 (338)
|.++|.++++..|++ -+..|++. +++.++-..+.++.++.+.. +.
T Consensus 204 fislG~lvgPpfGGilYe~~Gk~aPFlVL---~~v~Lld~~L~l~vi~p~~~------~~-------------------- 254 (464)
T KOG3764|consen 204 FISLGVLVGPPFGGILYEFAGKSAPFLVL---AIVLLLDGALQLLVIEPTEM------DP-------------------- 254 (464)
T ss_pred HHhccceecCCcccchHhhcCCcCcHHHH---HHHHHHHHHHHHheeCcccc------Cc--------------------
Confidence 356788888888887 89999999 88888766655555554321 00
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHH-HHhccCCCCCcchhhHHHHHHHH
Q psy17628 75 LDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRI-LIATNSKIISPNYGQNIVGFIQV 153 (338)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~ 153 (338)
+...+..++++++++|..+ .....+.+ ...+....-..++.+ .+++..+.-+.++......+...
T Consensus 255 ---------~~~~~~~~~~~Ll~dP~I~---~~agai~~--~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ 320 (464)
T KOG3764|consen 255 ---------DSTEQGTPMWSLLMDPYIL---LIAGAITF--SNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYA 320 (464)
T ss_pred ---------cccccCccHHHHHhCchHh---hhhcchhh--ccchHHHhCcccHHHHHHhccCCCcceeeeecccccchh
Confidence 0122345678888887321 11111111 111122222333333 33445344488888999999999
Q ss_pred HHHHHHHHhhhhcCCchHH--HHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeee
Q psy17628 154 IMTFFSSLLVDKAGRRPLL--LISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMG 231 (338)
Q Consensus 154 ~~~~~~g~l~d~~grr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
+++.+.|.++||++..+.+ ..+.+..+.++....+. .. -...+.......+.+........|.. .++.
T Consensus 321 ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~---~~------~~~L~vp~~~l~~~i~~~dasl~P~l-~~lv 390 (464)
T KOG3764|consen 321 IGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA---TS------IAQLWVPNFGLGFGIGLADASLIPTL-GYLV 390 (464)
T ss_pred ccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh---hh------HHHHhhhhHHHHHHHHHHHHHHhhhh-HHhc
Confidence 9999999999999944433 33333333333222222 10 00112222222222222222333333 3444
Q ss_pred ccCCch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHh
Q psy17628 232 ELFTPD---VKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYF 290 (338)
Q Consensus 232 e~~p~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (338)
|.--.+ .-|...++......++.+++|.+.+.+.+..|+.|...+.++..++-+-++.+
T Consensus 391 d~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l 452 (464)
T KOG3764|consen 391 DPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL 452 (464)
T ss_pred chhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 443333 55788888888889999999999999999999988877777777666654443
No 209
>KOG3762|consensus
Probab=98.95 E-value=4.9e-09 Score=88.84 Aligned_cols=157 Identities=15% Similarity=0.150 Sum_probs=119.8
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccch
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
...+.+++--.+++.|-.+...+........+.++.-++.+++.+|+|+-+++..++.+..+-.+.....
T Consensus 387 ~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L---------- 456 (618)
T KOG3762|consen 387 VGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL---------- 456 (618)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh----------
Confidence 3344455545567777666667777778888889999999999999999999999887777665544443
Q ss_pred hhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL-GSLIEFVVVKTFDDVERAFGTGVAFGTFA 278 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
++.|..+.+-.+-+...+..|..+. +|++...|++.|+++.++.... ..+|-.++..+.|.+...++-+..|.+++
T Consensus 457 --~n~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~g 533 (618)
T KOG3762|consen 457 --QNPWMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFG 533 (618)
T ss_pred --cCchheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHH
Confidence 2456666666677777787888777 8999999999999999986554 56677778888888888888888888888
Q ss_pred HHHHHHHHHHH
Q psy17628 279 VYCIIGTFFVY 289 (338)
Q Consensus 279 ~~~~~~~~~~~ 289 (338)
+.+++.+++..
T Consensus 534 iAcl~~l~~~~ 544 (618)
T KOG3762|consen 534 IACLVTLALFI 544 (618)
T ss_pred HHHHHHHHHHH
Confidence 87777665443
No 210
>PTZ00207 hypothetical protein; Provisional
Probab=98.94 E-value=8.1e-08 Score=85.10 Aligned_cols=176 Identities=10% Similarity=-0.022 Sum_probs=107.7
Q ss_pred HHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCC--cchhhHHHHHHHHHHHHHHHHhhhhcCCc--------hHHHHH
Q psy17628 107 VIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIIS--PNYGQNIVGFIQVIMTFFSSLLVDKAGRR--------PLLLIS 175 (338)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~grr--------~~~~~~ 175 (338)
++++..+++...........+.++.+.. |.+.+. ...+.++.++++.+|.+..|+++...-|| ++.+..
T Consensus 356 Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~ 435 (591)
T PTZ00207 356 WCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFI 435 (591)
T ss_pred HHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHH
Confidence 3333334333333445556677777777 763333 23378899999999999999988322222 222222
Q ss_pred hHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHH
Q psy17628 176 DICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEF 255 (338)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~ 255 (338)
..++.++.+++... .+.....+...+.+++++..+.... ..++|+|. ++-|+-..+.....-+|+.
T Consensus 436 ~~~~~~~~lll~~~------------~p~~~L~~~~~lvg~~~G~~~~~~~-~i~selFg-k~~g~~yN~~~~a~pigs~ 501 (591)
T PTZ00207 436 PSVCIITMLTLFLT------------LPKAALPLPYFIAAFANGFMAATIA-LVTRTIFA-KDPAKHYNFCFLGSVLSAI 501 (591)
T ss_pred HHHHHHHHHHHHHH------------CCccHhHHHHHHHHHHhhHhHHHHH-HHHHHHhc-cchHHHhhHHhHHHHHHHH
Confidence 22244444443332 0112445666677777777777666 78999999 7778877777777777776
Q ss_pred HH-HHHHHHHHHhcc-------------cceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628 256 VV-VKTFDDVERAFG-------------TGVAFGTFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 256 ~~-~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
+. ..+.|.++|.-. ++.+|++.++++.++.++...+.-+++
T Consensus 502 ~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 502 FLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 65 456677765422 344677888888888776655444444
No 211
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.92 E-value=3.9e-08 Score=80.79 Aligned_cols=135 Identities=10% Similarity=-0.062 Sum_probs=104.0
Q ss_pred HHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (338)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (338)
......|.+.+..+.+..++++.......+..++++..+++.+|+|+|+-++.++.++++++.++.-....
T Consensus 31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~--------- 101 (422)
T COG0738 31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS--------- 101 (422)
T ss_pred cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh---------
Confidence 44456777777779999999999999999999999999999999999999999999999998876432111
Q ss_pred hhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER 266 (338)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (338)
.....++...++.+.+.+.--.... .++..+.|++....-+++...+..+|..++|.+.+.++.
T Consensus 102 ~~y~~FL~~lFila~Gi~~LetaaN-p~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 102 KSYGFFLVALFILASGIGLLETAAN-PYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhHHHHHHHHHHHHhhhHHHHhccc-hHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1112233333444444444444444 688889998888888899999999999999999988776
No 212
>PRK11462 putative transporter; Provisional
Probab=98.90 E-value=1.3e-08 Score=89.01 Aligned_cols=169 Identities=12% Similarity=0.101 Sum_probs=104.9
Q ss_pred hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhh----cCCchHH-HHHhHHHHHHHHHHHHHHHHh
Q psy17628 120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRPLL-LISDICMAICIGALGYYFYLL 193 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~-~~~~~~~~~~~~~~~~~~~~~ 193 (338)
+.....|+.+++.+. |+++...+.+..+.-+...+.-++.|.++|| +|||+.. +++....+++.+++... .
T Consensus 25 ~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~---p 101 (460)
T PRK11462 25 FDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST---P 101 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC---C
Confidence 344556677776665 9999999999999999999999999999996 6876554 45656666655443322 1
Q ss_pred hcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCC-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Q psy17628 194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT-PDVKGLALGVICILGSLIEFVVVKTFDDVERAFG--- 269 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 269 (338)
... ......+..+...++..++.....|.. ++.+|+.+ +++|++..+.-...+.+|..+++.+...+....|
T Consensus 102 ~~s---~~~~~~y~~~~~~~~~~~~t~~~ipy~-al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~ 177 (460)
T PRK11462 102 DLS---MNGKMIYAAITYTLLTLLYTVVNIPYC-ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDN 177 (460)
T ss_pred CCC---cchHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 100 011122333334444555555544544 67788765 7889999999888888887777666555544433
Q ss_pred ----cceeehhhhHHHHHHHHHHHhhccCC
Q psy17628 270 ----TGVAFGTFAVYCIIGTFFVYFVVPET 295 (338)
Q Consensus 270 ----~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (338)
|.....+++++..++..+++...+|.
T Consensus 178 ~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 178 KPLGFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 33333444444444444444444443
No 213
>KOG0253|consensus
Probab=98.86 E-value=2.1e-08 Score=81.24 Aligned_cols=154 Identities=11% Similarity=-0.084 Sum_probs=105.5
Q ss_pred HHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHH
Q psy17628 128 KRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLP 207 (338)
Q Consensus 128 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (338)
|..-...|.+..+..++......+..+++..+|.++|++|||+.+.....+..+..++-+.. .+....
T Consensus 102 ~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s------------pnf~~L 169 (528)
T KOG0253|consen 102 PALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS------------PNFASL 169 (528)
T ss_pred HHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC------------CCeehh
Confidence 33333348888888999999999999999999999999999999888876666655443332 223344
Q ss_pred HHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHH
Q psy17628 208 VASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFF 287 (338)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (338)
.++..+.+++.+. .|...++-.|..|...|..-+-+. +...+|......+.-..+...||++..........+. ..
T Consensus 170 ~~f~~l~~~g~gg--~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~-a~ 245 (528)
T KOG0253|consen 170 CVFRALWGFGVGG--LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFA-AR 245 (528)
T ss_pred hHHHHHHhccCCC--ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHH-HH
Confidence 4555555555443 444436778999999998776655 6666676666666655667889988666555444444 44
Q ss_pred HHhhccCCCC
Q psy17628 288 VYFVVPETKN 297 (338)
Q Consensus 288 ~~~~~~~~~~ 297 (338)
..++.||+.+
T Consensus 246 f~~w~~ESpR 255 (528)
T KOG0253|consen 246 FLVWVYESPR 255 (528)
T ss_pred HHhhcccCcc
Confidence 5555888754
No 214
>KOG3626|consensus
Probab=98.84 E-value=9.2e-08 Score=85.19 Aligned_cols=90 Identities=19% Similarity=0.253 Sum_probs=62.5
Q ss_pred hhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHH-HHHHHHHHHHHhhhhc
Q psy17628 89 KKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKA 166 (338)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~ 166 (338)
...++.++++| +++...+........+..+.+|+|.|+++. |.+...+..+....++ +..+|.+++|++..|+
T Consensus 382 p~s~~~ll~N~-----if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkf 456 (735)
T KOG3626|consen 382 PKSIKRLLSNP-----IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKF 456 (735)
T ss_pred HHHHHHHhcCc-----hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeee
Confidence 34677788887 556666666666666888899999998775 9999988888755554 4457778999999987
Q ss_pred C--CchHHHHHhHHHHHHH
Q psy17628 167 G--RRPLLLISDICMAICI 183 (338)
Q Consensus 167 g--rr~~~~~~~~~~~~~~ 183 (338)
. .|....+.++...+..
T Consensus 457 kl~~r~~a~~~~~~~~l~l 475 (735)
T KOG3626|consen 457 KLSARGAAKFVIVCSVLSL 475 (735)
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 4 4444444444443333
No 215
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.82 E-value=3.7e-07 Score=80.39 Aligned_cols=118 Identities=8% Similarity=-0.104 Sum_probs=76.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcCCchH-------HHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHH
Q psy17628 143 YGQNIVGFIQVIMTFFSSLLVDKAGRRPL-------LLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYI 215 (338)
Q Consensus 143 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (338)
.......+..++.+++.+++.||+++|+. +.+|.++.+++.+.+.......... ....+.++.+....+.+
T Consensus 313 ~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 313 SFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADA--QGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCccCHHHHHHHHHHHH
Confidence 34445556677888889999999999973 6677777766655443221111100 00122344455555555
Q ss_pred HhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 216 IVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDD 263 (338)
Q Consensus 216 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 263 (338)
.+......+.. .++.+..|++.++.++|+.+....+|+.++..+...
T Consensus 391 ~Ge~~~~~~g~-~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~ 437 (489)
T PRK10207 391 LGELFISALGL-AMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATF 437 (489)
T ss_pred HHHHHHhHHHH-HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444434 678888999999999999998888888888776643
No 216
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.81 E-value=5.6e-09 Score=90.80 Aligned_cols=167 Identities=16% Similarity=0.077 Sum_probs=109.2
Q ss_pred HHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhh----hcCCchHHH-HHhHHHHHHHHHHHHH-HHHhh
Q psy17628 122 VVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVD----KAGRRPLLL-ISDICMAICIGALGYY-FYLLK 194 (338)
Q Consensus 122 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~-~~~~~~~~~~~~~~~~-~~~~~ 194 (338)
....|.+.++.+. |+++...+....+..+...+..++.|.++| |+|||+..+ .+....+++.+++... +...+
T Consensus 19 ~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~ 98 (428)
T PF13347_consen 19 LLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLS 98 (428)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhh
Confidence 3444555555555 999999999999999999999999999999 789776554 5666666665554432 10000
Q ss_pred cccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCC-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Q psy17628 195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT-PDVKGLALGVICILGSLIEFVVVKTFDDVERAF----- 268 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 268 (338)
. .....+..+...++..+++....+.. ++.+|+.+ +++|....+.......+|..+...+.+.+.+..
T Consensus 99 ~-----~~~~~~~~~~~~l~~~~~t~~~i~~~-al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~ 172 (428)
T PF13347_consen 99 F-----TAKLVWLFVFYILFDIAYTFVQIPYN-ALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDT 172 (428)
T ss_pred h-----hhHHHHHHHHHHHHHHhhhhccCchh-hcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcc
Confidence 0 01112234444455666666655555 78999987 568999999888888888766666666655433
Q ss_pred --ccceeehhhhHHHHHHHHHHHhhccC
Q psy17628 269 --GTGVAFGTFAVYCIIGTFFVYFVVPE 294 (338)
Q Consensus 269 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (338)
+|+....+.+++..+..++..+..+|
T Consensus 173 ~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 173 SNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 34455556666666666666666666
No 217
>KOG2816|consensus
Probab=98.79 E-value=2e-07 Score=80.48 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccce
Q psy17628 148 VGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPG 227 (338)
Q Consensus 148 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (338)
.++..++.++..|.++||+|||..+........+..+...+. .++.++...+ .+++....... .
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~--------------~~~~~~~~~l-~g~~~~~~s~~-~ 134 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ--------------GYWFFLLLGL-SGGFSAIFSVG-F 134 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH--------------HHHHhhhccc-ccchhhhhhhh-h
Confidence 367788889999999999999999999888887777666654 1232322112 22223233333 4
Q ss_pred eeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHhhccCCCCCCH
Q psy17628 228 VMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSL 300 (338)
Q Consensus 228 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (338)
++++|....+.|....|+.+..-..+..++|.+.+.+....|....+.+..+..++..+...+++||+...+.
T Consensus 135 a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 135 AYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred hheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 8999999999999999999998888889999999999888888778888888888888888888999865443
No 218
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.79 E-value=2.5e-07 Score=81.83 Aligned_cols=118 Identities=12% Similarity=-0.021 Sum_probs=70.9
Q ss_pred cchhhHHHHHHHHHHHHHH----HHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHH
Q psy17628 141 PNYGQNIVGFIQVIMTFFS----SLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII 216 (338)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~----g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (338)
..++.++..+..++..++. +++.||++.++.+.++.++.+++.+.+.......+.. ..-+.++.+....+.+.
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~---~~vs~~~~~~~~~l~~~ 394 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDA---GIVSVNWLIASYGLQSI 394 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CccCHHHHHHHHHHHHH
Confidence 3455556665556665555 5555555555777888888888877765542221111 01122344444444444
Q ss_pred hhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy17628 217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFD 262 (338)
Q Consensus 217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 262 (338)
+-.. ..|....++.+..|++.||.++|+......+++.++..+.+
T Consensus 395 ge~~-~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 395 GELM-ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHHH-HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 34444478899999999999999877666666666655553
No 219
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.79 E-value=1.3e-07 Score=77.12 Aligned_cols=156 Identities=13% Similarity=0.036 Sum_probs=97.6
Q ss_pred HHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHH
Q psy17628 129 RILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPV 208 (338)
Q Consensus 129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (338)
.+.++.|++..+...+.....+.+.+...+.|.++||+|||+..+...++.+++++.... .+....+
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-------------~~~~~L~ 125 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-------------SNYPVLL 125 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-------------cccHHHH
Confidence 344677999999999999999999999999999999999999999888888887754322 1233444
Q ss_pred HHHHHHHHhhcccccccceeeeecc----CCchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhccc--ceeehhhhHHH
Q psy17628 209 ASLAIYIIVFSVGFGPIPGVMMGEL----FTPDVKGLALGVICIL-GSLIEFVVVKTFDDVERAFGT--GVAFGTFAVYC 281 (338)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~e~----~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 281 (338)
+...+.+...+.-+...=.-++.|. +|.+..+...+...+. +.+..+++..+...+.+..+. ..+|.....+.
T Consensus 126 ~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l 205 (354)
T PF05631_consen 126 LGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLL 205 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 4444444444333322110134443 4555555555544422 333344444444455555543 56777776666
Q ss_pred HHHHHHHHhhccCCCC
Q psy17628 282 IIGTFFVYFVVPETKN 297 (338)
Q Consensus 282 ~~~~~~~~~~~~~~~~ 297 (338)
+++.+++....+|..+
T Consensus 206 ~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 206 AVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHHhcccccCC
Confidence 6666666555566544
No 220
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.77 E-value=1.6e-08 Score=84.94 Aligned_cols=160 Identities=13% Similarity=0.036 Sum_probs=91.0
Q ss_pred chHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHH-HHHHhhcc
Q psy17628 119 GINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGY-YFYLLKLD 196 (338)
Q Consensus 119 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 196 (338)
.+.....+.+.++++ .|++.++.|.+.+...+..++.+++.|.++||+|.||-++.......+....+.. .+.+..+
T Consensus 22 ~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~- 100 (412)
T PF01306_consen 22 IWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQ- 100 (412)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHH-
T ss_pred HHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 356777788888887 5999999999999999999999999999999999777655443332221111111 1111000
Q ss_pred cchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCc---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccee
Q psy17628 197 EKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP---DVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVA 273 (338)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (338)
.+ ..+...+.+...+..+.+.. =+.|.+-. +..+.-.|=.-..+.+|-+++..+.|.+.+. +.+..
T Consensus 101 -----~n---~~lg~iig~i~l~~~f~~~~--~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~ 169 (412)
T PF01306_consen 101 -----SN---FWLGAIIGGIYLGLVFNAGV--PLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNII 169 (412)
T ss_dssp -----TT----HHHHHHTTTTTTTTTTTHH--HHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred -----HH---HHHHHHHHHHHHHHHHcccc--hHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHH
Confidence 01 12222222333343333332 12243322 2235556667788888888999999988764 33456
Q ss_pred ehhhhHHHHHHHHHHHh
Q psy17628 274 FGTFAVYCIIGTFFVYF 290 (338)
Q Consensus 274 ~~~~~~~~~~~~~~~~~ 290 (338)
+++.....++..++.++
T Consensus 170 fwi~s~~~~il~lll~~ 186 (412)
T PF01306_consen 170 FWIASAAAIILLLLLLL 186 (412)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66555544444434333
No 221
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.76 E-value=6.5e-08 Score=84.81 Aligned_cols=168 Identities=11% Similarity=0.014 Sum_probs=101.2
Q ss_pred HHhhhcchHHHHHhhHHHHH-hccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcC-----CchHHHHHhHHHH-HHHHH
Q psy17628 113 CFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG-----RRPLLLISDICMA-ICIGA 185 (338)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~~~~~~~~-~~~~~ 185 (338)
++.+... .......+.+++ +.|.+..+.+...+...+...+-.+ +|.++||++ ||+.++++.++.. ++...
T Consensus 35 y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~ 112 (468)
T TIGR00788 35 LFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGL 112 (468)
T ss_pred HHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHh
Confidence 3344443 444444555555 5699999988888888887777555 999999997 6666666655442 22111
Q ss_pred HHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhh---HHHHHHHHHHHHHHHHHHHHH
Q psy17628 186 LGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL---ALGVICILGSLIEFVVVKTFD 262 (338)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~---~~~~~~~~~~~~~~~~~~~~~ 262 (338)
+... .+..........+..++.+.... ..-++..|..+ +.+.. ..+.......+|..+++.+.+
T Consensus 113 l~~~-----------~~~~~~~~~~~~l~~~~~a~~dv-~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G 179 (468)
T TIGR00788 113 LPGK-----------VSSAKVAAAFIFLAALAKALYDV-LVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGG 179 (468)
T ss_pred cccc-----------cchHHHHHHHHHHHHHHHHHHHH-hHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHH
Confidence 1110 01111222233333333333333 33367888887 44433 334444555678889999999
Q ss_pred HHHHhcccceeehhhhHHHHHHHHHHHhhccCCC
Q psy17628 263 DVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
.+.+..+|+..|++.+.+.++.. +..++++|.+
T Consensus 180 ~l~~~~~~~~~f~~~a~l~ll~~-~~~~~~~E~~ 212 (468)
T TIGR00788 180 PLLDKTLTRILFLITAALLLLQL-FVSNLSKERR 212 (468)
T ss_pred HHHHhcCcchHHHHHHHHHHHHH-HHHHhccccc
Confidence 99998999998888877776663 4445577754
No 222
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.74 E-value=1e-07 Score=82.46 Aligned_cols=68 Identities=9% Similarity=0.065 Sum_probs=51.7
Q ss_pred hHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCC-chHHHHHhHHHHHHHHHHH
Q psy17628 120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGR-RPLLLISDICMAICIGALG 187 (338)
Q Consensus 120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~ 187 (338)
+.....+++.++++ .|++..+.++..+...++.++++++.|.++||+|| |+++.++.++..+......
T Consensus 18 ~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~ 87 (418)
T TIGR00889 18 WGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA 87 (418)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 44455555655544 69999999999999999999999999999999965 6677766666555544433
No 223
>KOG2615|consensus
Probab=98.72 E-value=4.8e-07 Score=73.85 Aligned_cols=121 Identities=8% Similarity=0.020 Sum_probs=80.7
Q ss_pred HhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcC--CchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHH
Q psy17628 132 IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG--RRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVA 209 (338)
Q Consensus 132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (338)
...|+++.+.+.+.+..++...+.+.......||.. -+-.+..+...+.-..+..... ........
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~------------~~~~~l~~ 357 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA------------RTPVVLYL 357 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc------------ccchhhhH
Confidence 445899999999999999888888888777778766 4444444433333322222221 11223333
Q ss_pred HHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 210 SLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE 265 (338)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (338)
...+..+..+.....+. .++....|.++||+.+|+....+.++-+++|.+.|.+.
T Consensus 358 ~s~l~sf~~A~~vt~Lt-~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 358 GSTLKSFSTASVVTCLT-SLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred HHHHHHHHHHHhhHHHH-HHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 34444444444444444 67788899999999999999999999999998887543
No 224
>KOG2325|consensus
Probab=98.70 E-value=4.2e-08 Score=83.69 Aligned_cols=160 Identities=13% Similarity=0.009 Sum_probs=103.6
Q ss_pred HHHHh--ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCC-chHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhch
Q psy17628 129 RILIA--TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGR-RPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGL 205 (338)
Q Consensus 129 ~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (338)
.|+++ .+-+.+..|+..+...++..+++++.|+...|.+. |+.++.+.+++.++.++.....+..+ ...+
T Consensus 59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~-------~~~y 131 (488)
T KOG2325|consen 59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPN-------GVKY 131 (488)
T ss_pred hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhccc-------chHH
Confidence 34555 46677778999999999999999999999999885 77778888888888887744322211 1334
Q ss_pred HHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--hcc-----------cce
Q psy17628 206 LPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER--AFG-----------TGV 272 (338)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------~~~ 272 (338)
++++...+.+++. +.....-.|+++..-.+.|.++++.......++..++|.+-..+.. ..| +..
T Consensus 132 ~mL~~R~l~Gvg~--~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTa 209 (488)
T KOG2325|consen 132 LMLVARILTGVGV--GNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTA 209 (488)
T ss_pred HHHHHHHHcCcCc--ccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecch
Confidence 5555555544433 3334444788887777888888887776555555555544332211 111 122
Q ss_pred eehhhhHHHHHHHHHHHhhccCCCC
Q psy17628 273 AFGTFAVYCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
+-++.+++.++..++..++.+|..+
T Consensus 210 p~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 210 PAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHHHHHHHHHHHHHhheeeccc
Confidence 4456666666666666677777544
No 225
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.63 E-value=5.6e-09 Score=92.09 Aligned_cols=172 Identities=13% Similarity=0.055 Sum_probs=0.0
Q ss_pred hHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc-cCCCCCcchhhHHHHH-HHHHHHHHHHHhhhhcC
Q psy17628 90 KSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKAG 167 (338)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g 167 (338)
...+.+++|| .++...+...........+.+|.|.|++.. +.++.+++.+.....+ +.++|.+++|++..|+.
T Consensus 296 ~~l~~Ll~Np-----~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~k 370 (539)
T PF03137_consen 296 KALKRLLTNP-----VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFK 370 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEec
Confidence 3455566665 555556666666666778889999988765 8888888877765555 56788899999999874
Q ss_pred --CchHHHHHhHHHHHHHHHHHHHHH-------------Hh----h-cc-----------------------cchh-hhh
Q psy17628 168 --RRPLLLISDICMAICIGALGYYFY-------------LL----K-LD-----------------------EKLV-DGL 203 (338)
Q Consensus 168 --rr~~~~~~~~~~~~~~~~~~~~~~-------------~~----~-~~-----------------------~~~~-~~~ 203 (338)
.|..+....+...++.+.....+. .+ . .. .+.. ...
T Consensus 371 l~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~ 450 (539)
T PF03137_consen 371 LSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNK 450 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccc
Confidence 344444333333333222110000 00 0 00 0000 001
Q ss_pred chHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q psy17628 204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSL-IEFVVVKTFDDVERA 267 (338)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 267 (338)
...+++...+..+..+....+.. ...-..+|+++|+.|.|+...+..+ |..-+|.++|.++|.
T Consensus 451 ~~~Fl~~~~~~~~~~~~~~~p~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 451 LIPFLILLFILSFFTFMSQVPST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -----------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHhcccchh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 11222222233333333444444 4556778999999999998877555 556788888888775
No 226
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.62 E-value=6.3e-07 Score=72.84 Aligned_cols=153 Identities=12% Similarity=-0.008 Sum_probs=119.5
Q ss_pred HHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (338)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
......++.+-++.|.|.+.++.+++.+.+...+.+++..++++|+|.++.+..++++.+++..+=...
T Consensus 29 tsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~----------- 97 (395)
T COG2807 29 TSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG----------- 97 (395)
T ss_pred hhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-----------
Confidence 345556677778889999999999999999999999999999999999999999988888877654332
Q ss_pred hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccceeehhhhH
Q psy17628 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF-GTGVAFGTFAV 279 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 279 (338)
.....+....+.+.+.+.+..-.+ ..+-+.||.+ -+..+|++.....+++.+++.+...+.++. +|+....+.+.
T Consensus 98 --~~~~L~~gt~l~G~gIav~nVLLP-slIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl 173 (395)
T COG2807 98 --GLPLLFLGTLLAGAGIAVINVLLP-SLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWAL 173 (395)
T ss_pred --cHHHHHHHHHHHHhhHHHHHHhhh-HHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHH
Confidence 223445555566666665555555 6788888865 588999999999999999988888887776 69888888887
Q ss_pred HHHHHHHHH
Q psy17628 280 YCIIGTFFV 288 (338)
Q Consensus 280 ~~~~~~~~~ 288 (338)
.+++..++.
T Consensus 174 ~allAl~~W 182 (395)
T COG2807 174 LALLALLIW 182 (395)
T ss_pred HHHHHHHHH
Confidence 777766443
No 227
>PRK09848 glucuronide transporter; Provisional
Probab=98.61 E-value=4.6e-07 Score=79.39 Aligned_cols=125 Identities=11% Similarity=0.051 Sum_probs=70.9
Q ss_pred HHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc----CCchHH-HHHhHHHHHHHHHHHHHHHHhhc
Q psy17628 122 VVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA----GRRPLL-LISDICMAICIGALGYYFYLLKL 195 (338)
Q Consensus 122 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----grr~~~-~~~~~~~~~~~~~~~~~~~~~~~ 195 (338)
....|.+.++++. |++..+.+....+..+...+..++.|+++||. |||+.. ..+.+...+..+++.... ...
T Consensus 26 ~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~--~~~ 103 (448)
T PRK09848 26 MGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVP--TDW 103 (448)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCc--CCC
Confidence 3444555566665 99999999999999999999999999999986 667654 455444443333321110 000
Q ss_pred ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccC-CchhhhhHHHHHHHHHHH
Q psy17628 196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSL 252 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~ 252 (338)
. ......+......+...+++....+.. ++..|+. ++++|....+.-.....+
T Consensus 104 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-al~~~~~~~~~~r~~~~~~r~~~~~~ 157 (448)
T PRK09848 104 S---HSSKVVYAYLTYMGLGLCYSLVNIPYG-SLATAMTQQPQSRARLGAARGIAASL 157 (448)
T ss_pred C---cchHHHHHHHHHHHHHHHHHHhcccHh-hhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 0 001112222233344444544444443 4455554 446787766654443333
No 228
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.58 E-value=4.7e-07 Score=77.23 Aligned_cols=169 Identities=18% Similarity=0.174 Sum_probs=113.1
Q ss_pred hHHHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhh----cCCch-HHHHHhHHHHHHHHHHHHHHHHh
Q psy17628 120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRP-LLLISDICMAICIGALGYYFYLL 193 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~~~~~~~~~~~~~~~~~~~~~~~ 193 (338)
......|+..++.+. |+++..++.+..+.=+..++.-++.|.++|| +||+| .++.+.+..++...++.......
T Consensus 28 ~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~ 107 (467)
T COG2211 28 FGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFS 107 (467)
T ss_pred HHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcc
Confidence 445667788888777 9999999999999999999999999999996 56654 45566566666655544331110
Q ss_pred hcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Q psy17628 194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTFDDVERAF---- 268 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 268 (338)
.........+...+.+.+++....|.. ++.+|+. .+++|.+..+.-..+..++..+...+.+.+....
T Consensus 108 ------~~~k~~ya~vtY~l~~l~YT~vniPy~-al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~ 180 (467)
T COG2211 108 ------MTGKLIYALVTYMLLGLGYTLVNIPYG-ALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGD 180 (467)
T ss_pred ------cCcchHHHHHHHHHHHHHHHheeCchh-hcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 012334445555666677777666666 7778875 4578999999888888888777777777666543
Q ss_pred ---ccceeehhhhHHHHHHHHHHHhhccCC
Q psy17628 269 ---GTGVAFGTFAVYCIIGTFFVYFVVPET 295 (338)
Q Consensus 269 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (338)
|++....+++++..+..+++++-.+|.
T Consensus 181 ~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER 210 (467)
T COG2211 181 KALGYQGTALVLGVIGVILLLFCFFNVKER 210 (467)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333344445555555555555544443
No 229
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.57 E-value=4.3e-08 Score=84.79 Aligned_cols=131 Identities=9% Similarity=0.027 Sum_probs=80.4
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHH
Q psy17628 136 SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYI 215 (338)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (338)
+++...+....+..++.++|..+....--+..-|+++....++.++..+.-.......+.. -..++. +..+.-..+..
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~-~Gi~d~-~f~lgd~~l~~ 329 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLD-LGIPDQ-WFALGDTILEE 329 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeee-eCcCCe-EEEEEhHHHHH
Confidence 6666666677777777777777776666666777777666555544433211110000000 000111 22222233344
Q ss_pred HhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17628 216 IVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG 269 (338)
Q Consensus 216 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (338)
......+.|.. .+++|+.|+...|+.+++...+.++|..++..+...+.+..+
T Consensus 330 ~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 330 VIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44455556665 688999999999999999999999999888888877766555
No 230
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.55 E-value=1.6e-06 Score=78.33 Aligned_cols=155 Identities=11% Similarity=0.059 Sum_probs=101.0
Q ss_pred HHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh-cCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHH
Q psy17628 130 ILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPV 208 (338)
Q Consensus 130 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (338)
+.+..|++...+...........-+..+++|+++|+ +||++.+..+.++..++..++.+........ .......+
T Consensus 14 l~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~----~~~~~~~l 89 (654)
T TIGR00926 14 FLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH----PLHDLLDL 89 (654)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc----chHHHHHH
Confidence 334457777777777777777777888899999996 7999999999988888877666531110000 00112233
Q ss_pred HHHHHHHHhhcccccccceeeeeccCCch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccceeehhhh
Q psy17628 209 ASLAIYIIVFSVGFGPIPGVMMGELFTPD---VKGLALGVICILGSLIEFVVVKTFDDVERAF-------GTGVAFGTFA 278 (338)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 278 (338)
+.+.+..++.+..-.... +...|.++++ .|-....+.++..++|+.+++.+.+++.+.. +|...|.+.+
T Consensus 90 ~gLaLia~G~GgiKp~vs-af~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~ 168 (654)
T TIGR00926 90 LGLALIALGTGGIKPCVS-AFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA 168 (654)
T ss_pred HHHHHHHhhccccccCch-hhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence 344444444444434444 7888888653 3677888889999999999999988876443 4655666666
Q ss_pred HHHHHHHHHHH
Q psy17628 279 VYCIIGTFFVY 289 (338)
Q Consensus 279 ~~~~~~~~~~~ 289 (338)
++.+++.++..
T Consensus 169 i~m~ia~lvf~ 179 (654)
T TIGR00926 169 ILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHH
Confidence 55555554433
No 231
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.55 E-value=3.5e-07 Score=57.82 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=54.8
Q ss_pred hcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHH
Q psy17628 117 FSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDIC 178 (338)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 178 (338)
+.+......|.|.++++.|++..+.+.+..+..+..+++.+++|.++||+++++..+....+
T Consensus 13 f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 13 FAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 33466788899999999999999999999999999999999999999999999988776544
No 232
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.54 E-value=6.7e-07 Score=81.17 Aligned_cols=91 Identities=12% Similarity=0.082 Sum_probs=62.4
Q ss_pred hHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHH-HHHHHHHHHHHhhhhcC
Q psy17628 90 KSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKAG 167 (338)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g 167 (338)
..++.++++|.+ +...+..+......+.+..|+|.++++ .|++..+++++.....+ +.+++.+++|+++||++
T Consensus 321 ~~~~~Ll~n~~f-----~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~ 395 (633)
T TIGR00805 321 KIIKRLLCNPIY-----MLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFK 395 (633)
T ss_pred HHHHHHHcCcHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeec
Confidence 356778888733 223233333333466788899999886 49999999888877766 56889999999999998
Q ss_pred C--chHHHHHhHHHHHHHHH
Q psy17628 168 R--RPLLLISDICMAICIGA 185 (338)
Q Consensus 168 r--r~~~~~~~~~~~~~~~~ 185 (338)
+ |+.+.++.++..++.+.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 396 LNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 4 45666665555555433
No 233
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.48 E-value=7.1e-07 Score=76.26 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=52.6
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCC-chHHHHHhHHHHHHH
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGR-RPLLLISDICMAICI 183 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~ 183 (338)
+.....|.+.++++.|++..+++.+.+...+..+++.++.|.++||.++ |+++.+..++.++..
T Consensus 18 ~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~ 82 (400)
T PF03825_consen 18 YGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALAL 82 (400)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 5567778899999999999999999999999999999999999999864 555555555444443
No 234
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.38 E-value=3.6e-06 Score=71.90 Aligned_cols=156 Identities=10% Similarity=0.147 Sum_probs=86.5
Q ss_pred hHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCC-CCCcchhhHHHHHHHHHHHHHHHHhhhhcCC
Q psy17628 90 KSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSK-IISPNYGQNIVGFIQVIMTFFSSLLVDKAGR 168 (338)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr 168 (338)
..+++..+++.. +...++.....++++-+..|...+-++..-+ ..-.|..-.+..+.+.+.++..|++-.++.+
T Consensus 253 ~~~~~~y~n~~v-----l~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~ 327 (511)
T TIGR00806 253 SELVTIYRNPQL-----LLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWAR 327 (511)
T ss_pred HHHHHHhcCcch-----hhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence 345556666643 3333334444455777777777776666322 2234555666677777888889998665543
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHH
Q psy17628 169 RPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICI 248 (338)
Q Consensus 169 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 248 (338)
-..+.++.....-+.+++... ...+.|...+...++...+.+...... .-++.....+.-|...|++++
T Consensus 328 ~~~l~l~v~s~~~~gll~~m~----------~t~~Iw~~Y~~yvlf~~~y~flitia~-~~iA~~L~~~~~aLvFGiNtf 396 (511)
T TIGR00806 328 WSKLLIAVVSAIQAGLVFWMS----------QSHDIWVLYVTYVLFRGIYQFLVPIAT-FQIASSLSKELCALVFGINTF 396 (511)
T ss_pred hHHHHHHHHHHHHHHHhhhhh----------cccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccceEEEEecHHH
Confidence 323333322222221111111 123556666777777766665554444 344555555666888888888
Q ss_pred HHHHHHHHHHHHH
Q psy17628 249 LGSLIEFVVVKTF 261 (338)
Q Consensus 249 ~~~~~~~~~~~~~ 261 (338)
+..+...+...+.
T Consensus 397 vAl~LQtilT~iV 409 (511)
T TIGR00806 397 VATALKTIITAVV 409 (511)
T ss_pred HHHHHHHheEEEE
Confidence 7766665555433
No 235
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.34 E-value=2.7e-05 Score=64.96 Aligned_cols=163 Identities=9% Similarity=-0.016 Sum_probs=104.8
Q ss_pred hhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhh-hc
Q psy17628 89 KKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVD-KA 166 (338)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~ 166 (338)
...++++..+|..++.. ....+.... ++.--..+-+|-.+ +|++..++..++...+.+..+|....|++.. |.
T Consensus 198 ~~a~~~~~~~~~a~~f~-~fl~l~t~a----~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~ 272 (403)
T PF03209_consen 198 REAWRQVWASPQARRFF-VFLFLGTLA----FFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRL 272 (403)
T ss_pred HHHHHHHHhCCChhHHH-HHHHHHHHH----HHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34567777777444333 222222221 22222222233333 4899999999999999999999999988877 67
Q ss_pred CCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHH
Q psy17628 167 GRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVI 246 (338)
Q Consensus 167 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 246 (338)
++++....++....++..++...... .+.+.+.....+++++.+....... +.+-++.+++..|+.+|.-
T Consensus 273 ~~~~~a~~G~~~~~~~f~lii~a~~~---------~~~~~~~~~~~l~G~g~G~f~vgal-s~mM~lt~~~~aG~~mG~W 342 (403)
T PF03209_consen 273 GKKRTAALGCLLGALAFALIILAGPL---------GSPWLFRPGVFLLGLGNGLFTVGAL-SLMMDLTSAGRAGLFMGAW 342 (403)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhc---------ccchHHHHHHHHHHHhhhHHHHHHH-HHHHhCCCCcchhHHHHHH
Confidence 88888878888777777665554221 2234555555566655554433333 5667777778889999998
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17628 247 CILGSLIEFVVVKTFDDVER 266 (338)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~ 266 (338)
...+.++..++..+.+.+.|
T Consensus 343 GaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 343 GAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88887777777777776655
No 236
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.28 E-value=3.1e-05 Score=67.73 Aligned_cols=144 Identities=19% Similarity=0.265 Sum_probs=88.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHH-HHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhccc
Q psy17628 143 YGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI-CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVG 221 (338)
Q Consensus 143 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (338)
+..++..+...+..++.|.++|+-++||.++......+. +...+.+. . +...+...++..+...++...
T Consensus 74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v----~------~~~~~~~~~l~iia~v~~~~~ 143 (477)
T PF11700_consen 74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV----S------PGQWWLALVLFIIANVGYEAS 143 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh----C------cchHHHHHHHHHHHHHHHHHH
Confidence 456677788888889999999999988877665544443 33333322 1 112233334444444444443
Q ss_pred ccccceeeeeccCCchhh--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Q psy17628 222 FGPIPGVMMGELFTPDVK--------------------------GLALGVICILGSLIEFVVVKTFDDVERAFG------ 269 (338)
Q Consensus 222 ~~~~~~~~~~e~~p~~~r--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 269 (338)
..... +++.|+.+++.+ ++..+.....+++|+.+.-.+.-.+....+
T Consensus 144 ~vfyn-a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~ 222 (477)
T PF11700_consen 144 NVFYN-AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNT 222 (477)
T ss_pred HHHHH-HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 33333 788999888877 899999999999988766554433322221
Q ss_pred --cceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628 270 --TGVAFGTFAVYCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 270 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
.+..+.+.++..++..+..++++|+.++
T Consensus 223 ~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 223 WAIRVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 2445555666656666666666777644
No 237
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.20 E-value=2.1e-05 Score=68.32 Aligned_cols=157 Identities=13% Similarity=0.060 Sum_probs=97.7
Q ss_pred hHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhc-----CCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhh
Q psy17628 127 LKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-----GRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (338)
Q Consensus 127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (338)
.+.+.+++|.++.+...+.....+- -...++.|.++|-+ .||+.++++.++..++.+.++..... .
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~--------~ 83 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS--------E 83 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc--------c
Confidence 3445566788877765554444333 24467899999976 35556666666665554444433110 0
Q ss_pred hhchHHHHHHHHHHHhhcccccccceeeeeccC---CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF---TPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA 278 (338)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
.......+.+.+..++........- ++.+|.. |.+ ||..++.......+|+.++..+.|.+.+..+++..|.+.+
T Consensus 84 ~s~~~~~~~l~la~~g~a~~DV~aD-a~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~ 161 (433)
T PF03092_consen 84 SSAAIAVVLLFLASFGYAFADVAAD-ALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA 161 (433)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhh-HHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence 1112222333333333333322222 4555654 444 7888888889999999999999999999999999998888
Q ss_pred HHHHHHHHHHHhhccC
Q psy17628 279 VYCIIGTFFVYFVVPE 294 (338)
Q Consensus 279 ~~~~~~~~~~~~~~~~ 294 (338)
.+..+..+...+..+|
T Consensus 162 ~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 162 ALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 8877777666666665
No 238
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.19 E-value=8.7e-06 Score=67.80 Aligned_cols=137 Identities=9% Similarity=0.068 Sum_probs=85.5
Q ss_pred HhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcC-----CchHHH-HHhHHHHHHHHHHHHHHHHhhcccchhhhhch
Q psy17628 132 IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG-----RRPLLL-ISDICMAICIGALGYYFYLLKLDEKLVDGLGL 205 (338)
Q Consensus 132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (338)
.|++.+..-.+.......+.+ +..+..|+.||+.+ ||..++ .|...+..+..+...............+.+.+
T Consensus 8 vEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~ 86 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW 86 (403)
T ss_pred HHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence 344544444444555444443 45789999999988 776554 45555555555555544433321000111222
Q ss_pred H----HHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628 206 L----PVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT 270 (338)
Q Consensus 206 ~----~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (338)
. ....+.+++.+.+....+.. ++++|..|++.|+++.++.....-+|..++..+.+.+++.+..
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~l-ALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~ 154 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFL-ALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSP 154 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHH-HHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence 2 22333444444444444444 7899999999999999999999889988999999988886554
No 239
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=98.18 E-value=0.00018 Score=61.71 Aligned_cols=130 Identities=15% Similarity=0.061 Sum_probs=86.0
Q ss_pred HhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhc
Q psy17628 125 FYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLG 204 (338)
Q Consensus 125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (338)
..+..|+...|++....+..-....+.++.++++..++.+|+|..+.=+++......+..+....++....+ ......
T Consensus 279 ~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~--~~~~s~ 356 (432)
T PF06963_consen 279 GLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP--FSSISA 356 (432)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC--chhhHH
Confidence 344556667799999999999999999999999999999999998888888777766666555544433211 000011
Q ss_pred hHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHH
Q psy17628 205 LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVV 257 (338)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~ 257 (338)
...+....+.-.+.-..--... .++.|..|+++||+..|+-+...++...+.
T Consensus 357 ~~l~~gi~~SR~GLW~fDL~~~-qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 357 YLLLGGIALSRIGLWSFDLAVT-QIMQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred HHHHHHHHHHHHHHHhhhHHHH-HhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 1111112222122211112233 578999999999999999888887766544
No 240
>KOG2816|consensus
Probab=98.12 E-value=1.1e-05 Score=69.81 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=87.5
Q ss_pred ccCCCCCcchhhHHHHHHHHHHHHHHH-HhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHH
Q psy17628 134 TNSKIISPNYGQNIVGFIQVIMTFFSS-LLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA 212 (338)
Q Consensus 134 ~g~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (338)
.|++..+.+.+.+..+....+++++.. .+...+|-|++...|+....+.....++. +..|.++....
T Consensus 272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~------------~~~w~~~~~~v 339 (463)
T KOG2816|consen 272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA------------TETWMMFAAGV 339 (463)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh------------ccchhhhHHHH
Confidence 488888888888888888888887766 78888999998888888888887777664 12233332222
Q ss_pred HHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 213 IYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER 266 (338)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (338)
...... ...+...+.++-..+++.+|+.+++...+..+.+.++|.+.+.+..
T Consensus 340 -~~~~~~-~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 340 -VVALAG-IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred -HHHhhc-chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 222222 2333334677888889999999999999999999999998887654
No 241
>KOG2563|consensus
Probab=98.10 E-value=3e-05 Score=65.13 Aligned_cols=124 Identities=16% Similarity=0.032 Sum_probs=82.4
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhch--HHHHHHHHH
Q psy17628 137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGL--LPVASLAIY 214 (338)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 214 (338)
+....-+...++.+.+++..+.+-|+.||+|-|...+++....+++..+-.......-+ ...+ .....-.+.
T Consensus 77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~------~~f~~~l~~~Gq~ia 150 (480)
T KOG2563|consen 77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVP------PLFRRPLTHTGQSIA 150 (480)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCcccc------ccchhhhhHHhHHHH
Confidence 55666788889999999999999999999999999999999999988766554222111 1111 111222222
Q ss_pred HHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17628 215 IIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA 267 (338)
Q Consensus 215 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (338)
..... ....++.-...-+||+++|+++..+..+...+|..++..+-+.+..+
T Consensus 151 a~Aq~-Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 151 AAAQP-FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred HHhhh-HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 11111 11222212345579999999999999988888887776666555543
No 242
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.97 E-value=1.3e-06 Score=77.33 Aligned_cols=145 Identities=8% Similarity=-0.050 Sum_probs=0.5
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcc---
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD--- 196 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 196 (338)
........+.+-++++++..+.+++.+.+-++.++..++..++.+|-.|-+.+-.|.++++++.+++++..+.....
T Consensus 19 ~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~ 98 (539)
T PF03137_consen 19 SGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYE 98 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccc
Confidence 33444556667777899999999999999999999999999999997777888888999999988877542221110
Q ss_pred ---------------c----------------chhhhhchHHHHHHHHHHHhhcc---cccccceeeeeccCCchhhhhH
Q psy17628 197 ---------------E----------------KLVDGLGLLPVASLAIYIIVFSV---GFGPIPGVMMGELFTPDVKGLA 242 (338)
Q Consensus 197 ---------------~----------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~e~~p~~~r~~~ 242 (338)
. ..........+..+.+..+..++ ...++..+|+-|..+++.-+..
T Consensus 99 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splY 178 (539)
T PF03137_consen 99 EASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLY 178 (539)
T ss_dssp -----------------------------------------------------SSS------------------------
T ss_pred cccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccc
Confidence 0 00000111112222222222222 3345555899999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy17628 243 LGVICILGSLIEFVVVKTFDDV 264 (338)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~ 264 (338)
.|+......+|.+++-.+.+..
T Consensus 179 iGi~~~~~~lGPa~Gf~lg~~~ 200 (539)
T PF03137_consen 179 IGILYAMSILGPALGFLLGSFC 200 (539)
T ss_dssp ----------------------
T ss_pred hhhhhHHhhccHHHHHHHHHHH
Confidence 9998888888777665555443
No 243
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.96 E-value=0.00063 Score=49.58 Aligned_cols=111 Identities=14% Similarity=0.053 Sum_probs=79.4
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHH
Q psy17628 137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII 216 (338)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (338)
+.........+......+.+++.+.+.+++|.|+.++++.+...+........ +.+..+..-.+.++
T Consensus 35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~-------------~~~~l~~~s~l~G~ 101 (156)
T PF05978_consen 35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP-------------NSYTLYPASALLGF 101 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHhh
Confidence 33444556667778888889999999999999999999977776554433221 23445555667777
Q ss_pred hhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q psy17628 217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTF 261 (338)
Q Consensus 217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 261 (338)
+.+..+.... .++.+...++.|++-.++...+...+..++..+.
T Consensus 102 ~~a~lW~aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 102 GAALLWTAQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred hhHHhhHhhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666 7888888888999988887777776665555443
No 244
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.89 E-value=0.00053 Score=59.61 Aligned_cols=126 Identities=8% Similarity=-0.095 Sum_probs=81.4
Q ss_pred CcchhhHHHHHHHHHH-HHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcc-cch-------hhh--------
Q psy17628 140 SPNYGQNIVGFIQVIM-TFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD-EKL-------VDG-------- 202 (338)
Q Consensus 140 ~~~~~~~~~~~~~~~~-~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~-------- 202 (338)
...++-+...+...+. .++.+++++|++|++++............++++..++.... ++. ...
T Consensus 44 ~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i 123 (472)
T TIGR00769 44 IIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFI 123 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHH
Confidence 4445555554544444 78899999999999999887777777776666654332111 000 000
Q ss_pred ---hchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 203 ---LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE 265 (338)
Q Consensus 203 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (338)
..|...+.............+.+.|.+++|++..++-.+-.++....+++|..+++.+...+.
T Consensus 124 ~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 124 AILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011222222222222233333467889999999999999999999999999999998887765
No 245
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.84 E-value=0.0013 Score=57.92 Aligned_cols=120 Identities=16% Similarity=0.136 Sum_probs=73.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhcCC--ch-----HHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHH
Q psy17628 141 PNYGQNIVGFIQVIMTFFSSLLVDKAGR--RP-----LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI 213 (338)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr--r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (338)
..+..++..+.-++.+++.+++=.|..| |. =+.+|+++.+++.+.+.+.......+ ...+.++.+....+
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~---~~~s~~wl~~~~~~ 386 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMY---GHSSLPLMVLGLAV 386 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCcCHHHHHHHHHH
Confidence 5677788888888888877777566532 21 15567777777766665443222111 01223333333333
Q ss_pred HHHhhcccccccceeeeeccCCchhhhhHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17628 214 YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG-SLIEFVVVKTFDDV 264 (338)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~ 264 (338)
.. ..-....|+..+.++++.|++.||..+|+..... .+++.++..+.+..
T Consensus 387 ~t-~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 387 MG-FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HH-HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 3344556676688999999999999999986533 56666665555433
No 246
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.77 E-value=0.0013 Score=55.69 Aligned_cols=178 Identities=11% Similarity=0.001 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHhhHHHHHh--ccCCCCCcchhh-HHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHH
Q psy17628 103 KATIVIVGLLCFLSFSGINVVIFYLKRILIA--TNSKIISPNYGQ-NIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICM 179 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 179 (338)
+..++.+...++..+ -..-.|...++.+ .|++..+...-. -+..-..++..++...+.|..+-|++++++.+..
T Consensus 5 ~~~~llc~~gf~~~f---rPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~ 81 (412)
T PF01770_consen 5 KITLLLCLFGFFKEF---RPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSY 81 (412)
T ss_pred HHHHHHHHHHHHHhc---CCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 334444444444332 1233445555544 477776654322 2333444556677888999999999999987777
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHH
Q psy17628 180 AICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (338)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (338)
.+...++.+. .....+.+.-...+...+. -...++++=...|+++--++.+.......+|.+++..
T Consensus 82 i~t~~lll~~------------~sv~~mq~~q~~yg~~~a~--evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~ 147 (412)
T PF01770_consen 82 IITWLLLLFG------------TSVLAMQLMQFFYGLATAA--EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSL 147 (412)
T ss_pred HHHHHHHHHH------------CcHHHHHHHHHHHHHHHHH--HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555443 1222223333333333222 2222345555567776677777777777667666666
Q ss_pred HHHHHHHhcccceeeh-hhhHHHHHHHHHHHhhccCCCC
Q psy17628 260 TFDDVERAFGTGVAFG-TFAVYCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 260 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
+...+....+...... .....+...+++..+++|..++
T Consensus 148 lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 148 LGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 5554444222211111 2222333333344455776543
No 247
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.76 E-value=0.00019 Score=60.65 Aligned_cols=148 Identities=11% Similarity=0.154 Sum_probs=76.1
Q ss_pred HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhc---cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcC
Q psy17628 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT---NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG 167 (338)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 167 (338)
.+++..+++ .++...++.....++++....|...+.++. +-...-.|..-....+.+.++++..|++..++.
T Consensus 239 ~~~~~y~~~-----~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~ 313 (412)
T PF01770_consen 239 DFKSCYSNP-----RLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWD 313 (412)
T ss_pred HHHHHhcCc-----hHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchH
Confidence 445555555 333444444445556777777777777766 222233355666667777778888888866666
Q ss_pred CchHHHHHhHHHH--HHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHH
Q psy17628 168 RRPLLLISDICMA--ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGV 245 (338)
Q Consensus 168 rr~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 245 (338)
+..-+..+..... ...+++.. ..+.+...+...++...+........ .-++.....+.-|...|+
T Consensus 314 ~~~~l~l~~~S~l~a~~L~lm~~------------t~~Iwv~Y~~yIif~~~y~fliTiA~-~qIA~~l~~e~yaLVFGi 380 (412)
T PF01770_consen 314 RWGELALGVFSLLQAGLLFLMSF------------TGNIWVCYAGYIIFRSLYMFLITIAS-FQIAKNLSEERYALVFGI 380 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccceeeeeee
Confidence 6544443332222 22222222 12344555555555544443333222 223333344445666666
Q ss_pred HHHHHHHHHHH
Q psy17628 246 ICILGSLIEFV 256 (338)
Q Consensus 246 ~~~~~~~~~~~ 256 (338)
..++..+...+
T Consensus 381 Ntf~Al~LQti 391 (412)
T PF01770_consen 381 NTFVALVLQTI 391 (412)
T ss_pred HHHHHHHHHHh
Confidence 66555444433
No 248
>KOG3626|consensus
Probab=97.73 E-value=0.00039 Score=62.82 Aligned_cols=144 Identities=8% Similarity=-0.036 Sum_probs=96.8
Q ss_pred HHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcc-----
Q psy17628 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD----- 196 (338)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 196 (338)
.+..-...+-+.++++..+.+++...+-++..+...+..+..-|.-|-+.+-+|.++++++.+++++.-+..+..
T Consensus 115 y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~ 194 (735)
T KOG3626|consen 115 YFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELE 194 (735)
T ss_pred hhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhh
Confidence 334444455566689999999999999999999999999999998888899999999999998887642221111
Q ss_pred --------c--------------------chh---hhhchHHHHHHHHHHHhhcc---cccccceeeeeccCCchhhhhH
Q psy17628 197 --------E--------------------KLV---DGLGLLPVASLAIYIIVFSV---GFGPIPGVMMGELFTPDVKGLA 242 (338)
Q Consensus 197 --------~--------------------~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~e~~p~~~r~~~ 242 (338)
. ... .......++++++..+..++ ...++..+|+-|...++.-...
T Consensus 195 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplY 274 (735)
T KOG3626|consen 195 VIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLY 274 (735)
T ss_pred hhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHH
Confidence 0 000 01111122222222222222 2334445799999988888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 243 LGVICILGSLIEFVVVKTFDDVE 265 (338)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~ 265 (338)
.|+.+.+..+|.+++-.+.+...
T Consensus 275 lgi~~~~~~lGPaiGfllgS~~l 297 (735)
T KOG3626|consen 275 LGILYSMAILGPAIGFLLGSFCL 297 (735)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999998888877766666554
No 249
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.68 E-value=0.00024 Score=45.34 Aligned_cols=70 Identities=10% Similarity=0.002 Sum_probs=62.0
Q ss_pred hHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHH
Q psy17628 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYY 189 (338)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 189 (338)
-+.+...+|.+.++.++|..+.+++.+...++..+|.+...++.++.++++.+..+.+...+..+.+++.
T Consensus 8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678899999999999999999999999999999999999999888888999988888888777764
No 250
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=97.49 E-value=0.0016 Score=53.68 Aligned_cols=139 Identities=17% Similarity=0.094 Sum_probs=81.4
Q ss_pred HHHhhHHHHHhccCCC--CCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628 123 VIFYLKRILIATNSKI--ISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (338)
Q Consensus 123 ~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
.....+.+..+.+.+. ...++......+...++.++.|.++||+|||+.+..+.....++.+...+...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--------- 91 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN--------- 91 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc---------
Confidence 3344555555554333 35677888888888888899999999999998777776553333333332200
Q ss_pred hhhchHHHHHHHHHHHhhcccccccceeeeeccCCc-hhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHh--cccce
Q psy17628 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP-DVKGLALGVICI-LGSLIEFVVVKTFDDVERA--FGTGV 272 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~ 272 (338)
...+..+......+.+.+ ...+...+++.|.+|. +.|+...+.... ...++..+++.+.+.+... .+|+.
T Consensus 92 -~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (338)
T COG0477 92 -VGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRA 165 (338)
T ss_pred -chHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 011222222322333333 2333444788899887 678888887776 4556666666554444433 35555
No 251
>KOG2325|consensus
Probab=97.47 E-value=6.1e-05 Score=64.84 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=45.4
Q ss_pred eeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHH
Q psy17628 228 VMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT 285 (338)
Q Consensus 228 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (338)
+.-+|+..++.++++.++....+..+..++|.+........|.++...+.....++..
T Consensus 411 tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~ 468 (488)
T KOG2325|consen 411 TLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVA 468 (488)
T ss_pred HHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHH
Confidence 5668889999999999999999999999999888888888888766555444444433
No 252
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.44 E-value=0.028 Score=48.63 Aligned_cols=148 Identities=16% Similarity=0.088 Sum_probs=83.6
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhhhhcCCc--h-----HHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHH
Q psy17628 140 SPNYGQNIVGFIQVIMTFFSSLLVDKAGRR--P-----LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA 212 (338)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (338)
...+..++..+.-++.+++..++-.|.+++ . -+-++..+++.+.+++.........+ ....+.++.+....
T Consensus 325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~--~~~~s~~~lil~y~ 402 (498)
T COG3104 325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGP--SGLVSVWWLVLSYV 402 (498)
T ss_pred CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCcCHHHHHHHHH
Confidence 345777888888888888888887775444 1 23345555555555444432222110 11223334443333
Q ss_pred HHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHhcccceeehhhhHHHHHHHH
Q psy17628 213 IYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDD------VERAFGTGVAFGTFAVYCIIGTF 286 (338)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 286 (338)
+.. ..-....++..+++....|+...+..+++.......+..++..+.+. ..+.......|+.++....+...
T Consensus 403 l~s-~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~ 481 (498)
T COG3104 403 LQS-FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGI 481 (498)
T ss_pred HHH-HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 333 33444556655788889999988988888766666666665555442 22233334456666666665554
Q ss_pred HHHh
Q psy17628 287 FVYF 290 (338)
Q Consensus 287 ~~~~ 290 (338)
....
T Consensus 482 ~~~~ 485 (498)
T COG3104 482 LLLL 485 (498)
T ss_pred HHHH
Confidence 4444
No 253
>KOG0637|consensus
Probab=97.42 E-value=0.00012 Score=61.76 Aligned_cols=157 Identities=14% Similarity=0.114 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh----cCCchHHHHH-hH
Q psy17628 103 KATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRPLLLIS-DI 177 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~~~-~~ 177 (338)
+.++....+.+..++. +..=..|.+.++++.|.+....+..-...-+..++.+++.|..+|| +||||.++.. .+
T Consensus 32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 3344445555555543 5567789999999999998888888888888889999999999995 7888776654 44
Q ss_pred HHHHHHHHHHHHHHHhhc--ccchh---hhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhh-HHHHHHHHHH
Q psy17628 178 CMAICIGALGYYFYLLKL--DEKLV---DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL-ALGVICILGS 251 (338)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~-~~~~~~~~~~ 251 (338)
...++.+++++....... +++.. .-.....++.+.+.-+......+|.= +++.|+...+.+.+ +++....+..
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r-a~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR-ALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH-HHHHHhccChhhhhccchhHHHHHH
Confidence 445555555544222111 00000 01112233344455555555666666 78999987777766 8888888888
Q ss_pred HHHHHHHHHH
Q psy17628 252 LIEFVVVKTF 261 (338)
Q Consensus 252 ~~~~~~~~~~ 261 (338)
+|+.++-.+.
T Consensus 190 vGnvLGY~~g 199 (498)
T KOG0637|consen 190 VGNVLGYALG 199 (498)
T ss_pred hcceeeeecc
Confidence 8876664443
No 254
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.27 E-value=0.0096 Score=50.56 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q psy17628 205 LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTF 261 (338)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 261 (338)
|..++.++.-|...+..+.... ..+.|-.|+++|-.++|.....-.+|..++..+.
T Consensus 336 ~ivf~lif~eGLlGGa~YVNtF-~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~ 391 (402)
T PF02487_consen 336 WIVFVLIFYEGLLGGASYVNTF-YRISEEVPPEDREFSLGAVSVSDSLGILLAGLLG 391 (402)
T ss_pred HHHHHHHHHHHHhhhHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444444444444444444443 5667778899999999998888777776665544
No 255
>KOG4686|consensus
Probab=97.17 E-value=0.00015 Score=57.40 Aligned_cols=130 Identities=13% Similarity=0.046 Sum_probs=88.3
Q ss_pred HHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh-cCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHH
Q psy17628 130 ILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPV 208 (338)
Q Consensus 130 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (338)
+-.+.+.+..+..++.++++.-.++..+++|++.|| +|-|...++-.....++-++++.-.. ....|.+.
T Consensus 70 fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi---------~~aFw~M~ 140 (459)
T KOG4686|consen 70 FKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI---------SHAFWTML 140 (459)
T ss_pred hhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH---------HHHHHHHH
Confidence 334456666677888888888889999999999996 67666555555555555555443211 22345555
Q ss_pred HHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17628 209 ASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG 269 (338)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (338)
...++++.+.- ........+.+-.|..+.-+.++|+......+|+.+--.+.+++.+..+
T Consensus 141 ~GRF~FGIGgE-SlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 141 AGRFLFGIGGE-SLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred hhheeeccCch-hhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence 55655554433 2333344688888999999999999999999998877667777766544
No 256
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=97.08 E-value=0.016 Score=50.92 Aligned_cols=116 Identities=12% Similarity=0.008 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcc-cchh--h--------h--------hchHHHHHH
Q psy17628 151 IQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD-EKLV--D--------G--------LGLLPVASL 211 (338)
Q Consensus 151 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~--------~--------~~~~~~~~~ 211 (338)
+.++...+..+++++++|.+++.+..........++++..++.... +++. . . ..|...+..
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 3455567789999999999998887777776666666654432111 0000 0 0 001111111
Q ss_pred HHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 212 AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER 266 (338)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (338)
...-...+.......|.+++|+++.++-.+..++....++++..+++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222223334567899999999999999999999999999988888877665
No 257
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.97 E-value=0.036 Score=47.94 Aligned_cols=171 Identities=11% Similarity=0.046 Sum_probs=85.7
Q ss_pred HHHHhhHHHHHhcc-CCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchh
Q psy17628 122 VVIFYLKRILIATN-SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (338)
Q Consensus 122 ~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
...+..+.++.+.. -+-.-.+.+.....+..++.++..|...||..|.+......+..-++..+...............
T Consensus 20 ~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~ 99 (432)
T PF06963_consen 20 MWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSS 99 (432)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 34444555555541 13333345555666777788888899999999998877766555444333332222111110000
Q ss_pred ---hhhchHHHHHHHHHHHhhcccccccceeeeecc----C--CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17628 201 ---DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL----F--TPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTG 271 (338)
Q Consensus 201 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~--p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (338)
.......+....+++............+.--|+ . +++.....++...-+=.+...++|.+.|.+.+..+..
T Consensus 100 ~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~ 179 (432)
T PF06963_consen 100 SQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPV 179 (432)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHH
Confidence 011111111111111111111111111222222 2 2334455555555555667889999999988877776
Q ss_pred eeehhhhHHHHHHHHHHHhhc
Q psy17628 272 VAFGTFAVYCIIGTFFVYFVV 292 (338)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~ 292 (338)
....+.++..++...+=++++
T Consensus 180 ~~~~~i~~~N~~S~~vEy~~l 200 (432)
T PF06963_consen 180 IAAIFIAGWNLASVFVEYFLL 200 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665544444
No 258
>KOG3810|consensus
Probab=96.96 E-value=0.023 Score=46.72 Aligned_cols=153 Identities=12% Similarity=0.109 Sum_probs=81.8
Q ss_pred HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCC--CCcchhhHHHHHHHHHHHHHHHHhhhhcCC
Q psy17628 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKI--ISPNYGQNIVGFIQVIMTFFSSLLVDKAGR 168 (338)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr 168 (338)
++.+..++|.. ....++.....+|++-...|...+-++..-++ .-.|..=.+..+.++++.+..|.+.-.+.|
T Consensus 226 ~l~~~y~np~l-----l~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r 300 (433)
T KOG3810|consen 226 DLQECYSNPRL-----LKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNR 300 (433)
T ss_pred HHHHHhcCchh-----hhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccch
Confidence 45556666643 33334444445557777777766666553111 112344455666677788888888777766
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHH
Q psy17628 169 RPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICI 248 (338)
Q Consensus 169 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 248 (338)
..-++++......+..++.. . .+.+.|+......++...+........ .-+++....+.-|...|+..+
T Consensus 301 ~g~~ll~~~s~~~agllf~m----~------~t~~Iw~~Ya~yvlfr~~y~l~itiA~-~~iA~nL~~e~~gLvFGiNTF 369 (433)
T KOG3810|consen 301 WGDLLLAVGSAVQAGLLFIM----A------QTQHIWVCYAGYVLFRVIYQLTITIAT-FQIARNLSSELFGLVFGINTF 369 (433)
T ss_pred hhHHHHHHHHHHhhhhhhhh----h------cccceehhhhhHHHHHhhHhhhhhHHH-HHHHHhhhhhhheeeeehHHH
Confidence 64433332222222111111 1 123455666666666655555444443 344555566667888888777
Q ss_pred HHHHHHHHHHH
Q psy17628 249 LGSLIEFVVVK 259 (338)
Q Consensus 249 ~~~~~~~~~~~ 259 (338)
+.-+...+...
T Consensus 370 vAl~lQsilT~ 380 (433)
T KOG3810|consen 370 VALILQSILTL 380 (433)
T ss_pred HHHHHHHhheE
Confidence 76665554443
No 259
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=96.95 E-value=0.0068 Score=51.15 Aligned_cols=107 Identities=21% Similarity=0.185 Sum_probs=64.5
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHH-HHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcc
Q psy17628 142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA-ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV 220 (338)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (338)
+...++..+...+.+++.|.++|+.|+||.......... ++.+.+.+. . +.+..+..++++.+...++..
T Consensus 61 gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i---~------~~s~~~~~l~~~il~~i~~~~ 131 (438)
T COG2270 61 GYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFI---P------PGSYLLLLLLFLILASIGFEF 131 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHh---C------CCchHHHHHHHHHHHHHhcch
Confidence 445666777778888999999999998776655444333 333333332 0 011233334444444444443
Q ss_pred cccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHH
Q psy17628 221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVV 258 (338)
Q Consensus 221 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 258 (338)
... ...+++.+..+++.-++..++....+.+|+.+.-
T Consensus 132 s~V-fyds~L~~~~~k~~~~riS~lg~~~gylgs~i~l 168 (438)
T COG2270 132 SNV-FYDSMLPRLTTKDNMGRISGLGWALGYLGSVILL 168 (438)
T ss_pred hhe-ehhhHhhhhcCccccCcccccccccccccchHHH
Confidence 333 3337888888887778888877777777765443
No 260
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=96.88 E-value=0.03 Score=44.19 Aligned_cols=20 Identities=10% Similarity=0.389 Sum_probs=13.2
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhh
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFL 38 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~ 38 (338)
||+++.+. +++..+..++..
T Consensus 40 W~~I~si~---~lL~~IpLIly~ 59 (267)
T PF07672_consen 40 WQWILSIF---ILLIFIPLILYI 59 (267)
T ss_pred HHHHHHHH---HHHHHHHHHHHH
Confidence 99999999 555555333333
No 261
>KOG1237|consensus
Probab=96.73 E-value=0.12 Score=46.57 Aligned_cols=159 Identities=13% Similarity=0.118 Sum_probs=96.1
Q ss_pred HHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh-cCCchHHHHHhHHHHHHHHHHHHHHHHhhccc--------ch
Q psy17628 129 RILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLKLDE--------KL 199 (338)
Q Consensus 129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 199 (338)
++...++.+...+...............+++++++|. +||-+.+.++.++..++.+++........... ..
T Consensus 63 ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~ 142 (571)
T KOG1237|consen 63 YLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGN 142 (571)
T ss_pred HHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCC
Confidence 3334446555566666666677777888999999996 58889999998888888776665543332110 00
Q ss_pred h-hhhc----hHHHHHHHHHHHhhcccccccceeeeeccCCc----hhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17628 200 V-DGLG----LLPVASLAIYIIVFSVGFGPIPGVMMGELFTP----DVK--GLALGVICILGSLIEFVVVKTFDDVERAF 268 (338)
Q Consensus 200 ~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~----~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (338)
. .... ......+.+...+.+ +.-+....+-+|.++. +.+ ...+...++..+.|..++..+..+.-++.
T Consensus 143 ~c~~~s~~q~~~~~~~l~lia~G~g-g~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~ 221 (571)
T KOG1237|consen 143 VCESPSKLQLAVLYGALYLIALGAG-GIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV 221 (571)
T ss_pred cccCcchHHHHHHHHHHHHheeccC-CCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 0 0011 112222222222222 2233333677888872 222 35666777777888877777777777888
Q ss_pred ccceeehhhhHHHHHHHHHH
Q psy17628 269 GTGVAFGTFAVYCIIGTFFV 288 (338)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~ 288 (338)
+|...|.+..++..++.++.
T Consensus 222 ~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 222 GWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred cceeeccHHHHHHHHHHHHH
Confidence 99888877776666555443
No 262
>KOG3098|consensus
Probab=96.68 E-value=0.032 Score=48.39 Aligned_cols=119 Identities=18% Similarity=0.023 Sum_probs=68.1
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhh---cCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc------hhhhhchHHHHHHH
Q psy17628 142 NYGQNIVGFIQVIMTFFSSLLVDK---AGRRPLLLISDICMAICIGALGYYFYLLKLDEK------LVDGLGLLPVASLA 212 (338)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~g~l~d~---~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 212 (338)
+......+++.+++....+.+.+| +||++.+.++..+..+..++.......+.+-.+ ..........++..
T Consensus 282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence 444556677777777778888764 788999888887777776655443222211000 00011223334444
Q ss_pred HHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy17628 213 IYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFD 262 (338)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 262 (338)
+.+.+-+.... ..+.++....| +.|..+.++.-+-..++..++-...+
T Consensus 362 l~G~~D~~~~t-~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 362 LLGFGDACFNT-QRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHhhHHHHHHH-HHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44444443333 33367777774 56888888877777776655544443
No 263
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=96.67 E-value=0.0023 Score=53.08 Aligned_cols=79 Identities=9% Similarity=-0.103 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------------cc
Q psy17628 206 LPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA----------------FG 269 (338)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~ 269 (338)
..++..++.+.+.+....... .+++++.|++.+++.+++...+..+|..++|.+.+.+... ..
T Consensus 12 ~~l~~~f~~g~G~~~lq~~~n-~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~ 90 (310)
T TIGR01272 12 LFLGALFVLASGLTILQVAAN-PYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAK 90 (310)
T ss_pred HHHHHHHHHHhhHHHHHhhHH-HHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHH
Confidence 344555555666665555555 7899999999999999999999999999999999877632 24
Q ss_pred cceeehhhhHHHHHHH
Q psy17628 270 TGVAFGTFAVYCIIGT 285 (338)
Q Consensus 270 ~~~~~~~~~~~~~~~~ 285 (338)
|+.++++.+.+..+..
T Consensus 91 ~~~~yl~ia~~~~~~~ 106 (310)
T TIGR01272 91 VHTPYLLLAGALAVLA 106 (310)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6667765555544444
No 264
>KOG3762|consensus
Probab=96.62 E-value=0.0017 Score=56.30 Aligned_cols=63 Identities=10% Similarity=0.130 Sum_probs=53.5
Q ss_pred chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHH
Q psy17628 119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181 (338)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 181 (338)
....+...++.+.+++|+++.+.+.++..--+..+++.+++|+++||+.+|+.++++..+..+
T Consensus 26 ~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v 88 (618)
T KOG3762|consen 26 RFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSV 88 (618)
T ss_pred cccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 355677888999999999999999999999999999999999999999877776666554443
No 265
>KOG3098|consensus
Probab=96.54 E-value=0.039 Score=47.86 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=85.8
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHH
Q psy17628 137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII 216 (338)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (338)
++........+.+....+.+++.+.+.|+.|.|..+.++..........+... +.+..++.-.+.|+
T Consensus 48 ~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-------------N~y~~yfssallG~ 114 (461)
T KOG3098|consen 48 SAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-------------NSYYLYFSSALLGF 114 (461)
T ss_pred CCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-------------chHHHHHHHHHhhh
Confidence 33333344778888889999999999999999999999987777766555443 45667777788888
Q ss_pred hhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q psy17628 217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTF 261 (338)
Q Consensus 217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 261 (338)
+.+..+..-. .+++|..+.+.+.+..++...+...+.+++....
T Consensus 115 Gaallw~GqG-~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 115 GAALLWTGQG-GYLTSNSTRETIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred hHHheecccc-eehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence 8887776666 8999999999999999988888777766665443
No 266
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.47 E-value=0.0064 Score=52.00 Aligned_cols=116 Identities=11% Similarity=-0.009 Sum_probs=74.3
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCch---hhhhHHHHH
Q psy17628 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD---VKGLALGVI 246 (338)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~ 246 (338)
+.++.+.++..++.+++.+........ .........+.+.+...+.+..=.++. ++.+|.++++ .|..+....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~---~~~~~~~~~~gL~lia~G~G~~K~ni~-~~~~dq~~~~~~~~~~~~F~~f 77 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLP---SGIQLGLFYIGLALIAVGTGGIKPNIS-PFGADQYDEDDDSRRDSFFNWF 77 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC---------CHHHHHHHHHHHHHHCCHHHHH-HHHHHCSSTTTTTHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhh---hhHHHHHHHHHHHHHHhccccccccHH-HHHHHHhcccchhhhhhhHHHH
Confidence 456677777788877755543222110 011223445555555666555445555 7889988765 457777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHH
Q psy17628 247 CILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY 289 (338)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (338)
+...++|+.++....+++.++.+|...|.+.++..+++.+..+
T Consensus 78 Y~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 78 YWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888777766666654433
No 267
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=96.17 E-value=0.065 Score=46.55 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=32.1
Q ss_pred eeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17628 228 VMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA 267 (338)
Q Consensus 228 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (338)
++-+.+.++..-||.|.+.|.+.++|+..-..+.-+++|.
T Consensus 428 AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 428 AFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 7778888999999999999999999987665555555553
No 268
>KOG1479|consensus
Probab=96.07 E-value=0.57 Score=39.96 Aligned_cols=29 Identities=17% Similarity=-0.010 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhhcchHHHHHhhHHHHHhc
Q psy17628 106 IVIVGLLCFLSFSGINVVIFYLKRILIAT 134 (338)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (338)
...+++........++.+.+-.+++..+.
T Consensus 20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~ 48 (406)
T KOG1479|consen 20 YLIFLLLGIGTLLPWNMFITASDYYYYRF 48 (406)
T ss_pred HHHHHHHhcccccchHhhhccHHHHHhhc
Confidence 33344444444556778888888887776
No 269
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=96.03 E-value=0.02 Score=49.85 Aligned_cols=54 Identities=7% Similarity=-0.002 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHH
Q psy17628 205 LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (338)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (338)
+..++...+++...+.. ......+..+..++++|-.+..+......+|-.++..
T Consensus 373 ~~~~~~~~l~gltnGy~-~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~ 426 (437)
T TIGR00939 373 AYFIILMLLFGFSNGYL-GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAV 426 (437)
T ss_pred HHHHHHHHHHHHhhhHH-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555444332 3333367788888888877777766666666555544
No 270
>KOG4332|consensus
Probab=95.95 E-value=0.0085 Score=47.38 Aligned_cols=55 Identities=11% Similarity=-0.106 Sum_probs=42.8
Q ss_pred HHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHH
Q psy17628 129 RILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI 183 (338)
Q Consensus 129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 183 (338)
++.+..|+...+++.+........++...+.|-++||-|||+..+...+...+++
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC 116 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC 116 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH
Confidence 3445668888888888888778888888999999999999998766655555544
No 271
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=95.71 E-value=0.0021 Score=53.28 Aligned_cols=113 Identities=12% Similarity=0.006 Sum_probs=1.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhc-CCchHHHHHhHHHHHHHHHHHHHHHHhhcc-cchhhhhchHHHHHHHHHHHhhccc
Q psy17628 144 GQNIVGFIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICIGALGYYFYLLKLD-EKLVDGLGLLPVASLAIYIIVFSVG 221 (338)
Q Consensus 144 ~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (338)
....++++..+|..+.++..-+. .+|.+. +..+.=.+...++.........+ .+..-.+.+..++...++++..+.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy- 264 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY- 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch-
Confidence 45578888889988877643211 233333 22222221111111110100000 000011223344444444444332
Q ss_pred ccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHH
Q psy17628 222 FGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVV 258 (338)
Q Consensus 222 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 258 (338)
.......+.++..+++.|..+-.+....-.+|-.+|.
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs 301 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGS 301 (309)
T ss_dssp --HHHH-------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334446778888888887666665555555444443
No 272
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=95.64 E-value=0.72 Score=40.22 Aligned_cols=129 Identities=10% Similarity=-0.076 Sum_probs=83.2
Q ss_pred CCCcchhhHHHHH-HHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcc-cch--------hhhh-c--
Q psy17628 138 IISPNYGQNIVGF-IQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD-EKL--------VDGL-G-- 204 (338)
Q Consensus 138 ~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~-~-- 204 (338)
+....++-...-+ ++++..++..++.+++.|.+++.........+.+++++..++.... +++ ...+ .
T Consensus 60 ae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~ 139 (509)
T COG3202 60 AESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLK 139 (509)
T ss_pred chhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccce
Confidence 3444444444444 5667788899999999999999888888888878777766532211 000 0001 1
Q ss_pred --------hHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 205 --------LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER 266 (338)
Q Consensus 205 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (338)
|...+...+.-...+....-+.|..++|++..++-.+.+++.+..++++..+++.+..++..
T Consensus 140 ~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 140 WFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred eeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222222222222333334556788999999999999999999999998888887776654
No 273
>PRK03612 spermidine synthase; Provisional
Probab=95.51 E-value=0.27 Score=44.08 Aligned_cols=46 Identities=11% Similarity=0.010 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HhcccceeehhhhHHHHHHH
Q psy17628 240 GLALGVICILGSLIEFVVVKTFDDVE-RAFGTGVAFGTFAVYCIIGT 285 (338)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 285 (338)
+...|-.+....+|+.+++.+.+.++ ...|.....++.+.+.++++
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 45567777777788888877776554 35565444444444444444
No 274
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=95.22 E-value=0.15 Score=43.50 Aligned_cols=132 Identities=8% Similarity=0.039 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhccccc
Q psy17628 144 GQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFG 223 (338)
Q Consensus 144 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (338)
....-.+-.++..+++.++.+|+.-+.-.....+++.+++++.++. .+.+.-++...+.+...+.+-.
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~------------~~v~~~l~Gv~las~ssg~GE~ 131 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS------------PSVWVRLLGVVLASLSSGLGEV 131 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec------------cchhHHHHHHHHHhhhhhhhHH
Confidence 3334445566667778888898765444445555666666655442 1223344444444444444433
Q ss_pred ccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ceeehhhhHHHHHHHHHHHhhccC
Q psy17628 224 PIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT--GVAFGTFAVYCIIGTFFVYFVVPE 294 (338)
Q Consensus 224 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 294 (338)
... -....+++.. .+-.....+.++.+++.....+.. .|+ +..+.....+.++..+..++.+|.
T Consensus 132 tfL--~lt~~y~~~~----l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 132 TFL--SLTHFYGKSS----LSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred HHH--HHHHhcCccc----cccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 322 2334555431 222222222333344443332323 343 335555555555444444444553
No 275
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=95.12 E-value=0.18 Score=43.94 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=30.0
Q ss_pred hhcchHHHHHhhHHHHHh--ccCCCCCcchhhH---HHHHHHHHHHHHHHHhhh-----hcCCchHHHHH
Q psy17628 116 SFSGINVVIFYLKRILIA--TNSKIISPNYGQN---IVGFIQVIMTFFSSLLVD-----KAGRRPLLLIS 175 (338)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~---~~~~~~~~~~~~~g~l~d-----~~grr~~~~~~ 175 (338)
+.........-.|.++++ .+.|-++.+.... .+++ -+++..+.| |+||||..++-
T Consensus 12 QGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSl-----KlLWaPiVDs~y~~~~GRRKSWiiP 76 (544)
T PF13000_consen 12 QGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSL-----KLLWAPIVDSVYSKRIGRRKSWIIP 76 (544)
T ss_pred cCcccccccccchhhhccccCCCChhHheeeeeeechhHH-----HHhhhhhhhhhcccccCCcchhhhH
Confidence 333333333567888887 4555555443322 2222 244555544 89999987654
No 276
>KOG3574|consensus
Probab=95.03 E-value=0.59 Score=39.47 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=33.8
Q ss_pred eeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17628 228 VMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF 268 (338)
Q Consensus 228 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (338)
+..+.+.|+..-|+.|.+.|...++|+..-..+...+.|..
T Consensus 392 af~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 392 AFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 67788899999999999999999999877666666666543
No 277
>KOG3574|consensus
Probab=94.65 E-value=0.22 Score=41.90 Aligned_cols=58 Identities=16% Similarity=0.101 Sum_probs=35.3
Q ss_pred HhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhh-----hcCCchHHHH
Q psy17628 114 FLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD-----KAGRRPLLLI 174 (338)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~grr~~~~~ 174 (338)
..+...+.... ..|.+++..|.|-++.+.....+.= .---+++..+.| |+|||+..++
T Consensus 41 llQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 41 LLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred HHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceee
Confidence 33444444444 8888888777776665544332211 122467788888 9999987654
No 278
>KOG1479|consensus
Probab=94.60 E-value=0.2 Score=42.55 Aligned_cols=49 Identities=6% Similarity=-0.113 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHH
Q psy17628 204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLI 253 (338)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~ 253 (338)
.++.++...+++...+ ....+...+.++..|++++-.+-.+....-..|
T Consensus 343 ~~~~~~l~~~lglsnG-Yltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~G 391 (406)
T KOG1479|consen 343 DGWFIFLMSLLGLSNG-YLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGG 391 (406)
T ss_pred chHHHHHHHHHHhccc-hHhhheehhcCCCCChHHHHHHHHHHHHHHHHH
Confidence 3444555555554433 334455578888888877765555544444333
No 279
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=93.15 E-value=1.7 Score=38.06 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhhhcCCchHHHHH
Q psy17628 149 GFIQVIMTFFSSLLVDKAGRRPLLLIS 175 (338)
Q Consensus 149 ~~~~~~~~~~~g~l~d~~grr~~~~~~ 175 (338)
.+..++..+..-.+..|+..|.-+..+
T Consensus 55 ~v~~l~~~~~~~~~~~~i~~~~Ri~~~ 81 (437)
T TIGR00939 55 QLPSLLFNSLNLFLIFRIPVTVRLLGG 81 (437)
T ss_pred HHHHHHHHHHHHHHhhccCccchhHHH
Confidence 333344444444555555543333334
No 280
>KOG0637|consensus
Probab=92.76 E-value=0.12 Score=44.36 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhH
Q psy17628 143 YGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDI 177 (338)
Q Consensus 143 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~ 177 (338)
+-..+..+...+.+...-++.||+|-|+.+..+..
T Consensus 336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~ 370 (498)
T KOG0637|consen 336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVN 370 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhH
Confidence 44556777778888999999999995554444433
No 281
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=91.74 E-value=9 Score=34.02 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHH
Q psy17628 143 YGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181 (338)
Q Consensus 143 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 181 (338)
......++..++..++.+++.+|+|-+....+.-++..+
T Consensus 307 ~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 307 DFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344455666666777779999999988777666555544
No 282
>KOG4332|consensus
Probab=90.58 E-value=1.4 Score=35.47 Aligned_cols=100 Identities=5% Similarity=0.020 Sum_probs=58.3
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhcCCc--hHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhc
Q psy17628 142 NYGQNIVGFIQVIMTFFSSLLVDKAGRR--PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFS 219 (338)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (338)
+.+...+.+.+++|+-+..++..|-..| ..+.+..++......+...... ..+. .......++.++++-.+.+
T Consensus 285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~-vsP~----kes~~~s~i~F~~~E~cvG 359 (454)
T KOG4332|consen 285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSS-VSPS----KESPSESLIGFCLFEACVG 359 (454)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhc-cCCC----cCCchHHHHHHHHHHHHHh
Confidence 5667777777888887777776654333 3444444444443333222211 1111 1223334666777777777
Q ss_pred ccccccceeeeeccCCchhhhhHHHHHH
Q psy17628 220 VGFGPIPGVMMGELFTPDVKGLALGVIC 247 (338)
Q Consensus 220 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 247 (338)
..+..+. -+-++..|.+.|++.+.+..
T Consensus 360 lfwPSim-kmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 360 LFWPSIM-KMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred hcchHHH-HHHHhhCCHHHHhhhhhhee
Confidence 7776665 56778889999987766543
No 283
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=88.31 E-value=6.3 Score=33.22 Aligned_cols=69 Identities=10% Similarity=0.008 Sum_probs=44.6
Q ss_pred HHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh
Q psy17628 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK 165 (338)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 165 (338)
.++.+.+++ +++.............+.....|.|.+..+ + .....|++.+...+..++|+.+..++..+
T Consensus 236 a~~~i~~d~----ril~LG~~qslFE~smy~FVflWtPaL~~~-~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 236 AWRAILSDP----RILLLGLIQSLFEGSMYLFVFLWTPALDPD-D-EELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHHHHHcCc----hhHHHHHHHHHHHHHHHHheeeeeceecCC-C-CCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345555554 355555566666665566667778876521 1 23346888888899999999888766554
No 284
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=86.97 E-value=0.98 Score=31.03 Aligned_cols=31 Identities=6% Similarity=0.131 Sum_probs=19.0
Q ss_pred hhHHHhhhhhhh--HHHHHHHHHhhhccCCchh
Q psy17628 16 YEDYTIICLSCL--VIPVLNLLVFLIVAPETPV 46 (338)
Q Consensus 16 Wr~~f~i~~~~~--~~~~~~~~~~~~~~pesp~ 46 (338)
-|.+|++...++ .+++++-+++++.+|+.|.
T Consensus 36 VRl~~vl~~~~~~~~~~~~~Yi~l~~~lp~~P~ 68 (118)
T PRK10697 36 VRIIVVLSIFFGLFVFTLVAYIILSFALDPMPD 68 (118)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhccCCcc
Confidence 577766652222 2345556677888888875
No 285
>KOG2601|consensus
Probab=86.43 E-value=12 Score=31.90 Aligned_cols=47 Identities=9% Similarity=0.006 Sum_probs=29.9
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHH
Q psy17628 137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI 183 (338)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 183 (338)
|.........+-+...++...+.|...|+..|+|++.....+.-++.
T Consensus 61 sl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv 107 (503)
T KOG2601|consen 61 SLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSV 107 (503)
T ss_pred eehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHH
Confidence 33344444455555666667777888899999998776655443333
No 286
>KOG2881|consensus
Probab=85.85 E-value=3.9 Score=32.32 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHH
Q psy17628 150 FIQVIMTFFSSLLVDKAGRRPLLLISDICMAIC 182 (338)
Q Consensus 150 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 182 (338)
++..+..+.+-+++.|+.-|.+.+.+..++.+.
T Consensus 251 lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 251 LCTGLAVIGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred HHHHHHHhhhHHHhhhheeEEEEEecchhHHHH
Confidence 333344444557788999888887775555443
No 287
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=83.55 E-value=3.6 Score=29.80 Aligned_cols=90 Identities=16% Similarity=0.220 Sum_probs=43.3
Q ss_pred HhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhh
Q psy17628 161 LLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG 240 (338)
Q Consensus 161 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 240 (338)
.++||+-||..+..|. -.++++..+..+++..... ..+-+.+..++.. .++++.+...+.|..++--.+++..|
T Consensus 56 ~Vs~RM~rRm~~~~Gi-P~~lG~~~f~~~y~l~~~~--~~dvP~~~~~~~S---~~~Fg~gllGisYGilSaSWD~~r~G 129 (153)
T PF11947_consen 56 VVSNRMLRRMAVFVGI-PTALGVAVFVVFYYLKSRQ--IVDVPPWAVLLVS---LVFFGLGLLGISYGILSASWDPEREG 129 (153)
T ss_pred HHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHhcc--ccccCchHHHHHH---HHHHHHHHHhhhhhhcccccCCCCCC
Confidence 4678887776655543 3334444444433333222 1111222222211 11222222233344555556667789
Q ss_pred hHHHHHHHHHHHHHHH
Q psy17628 241 LALGVICILGSLIEFV 256 (338)
Q Consensus 241 ~~~~~~~~~~~~~~~~ 256 (338)
+..|+-.+-.+++-..
T Consensus 130 SllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 130 SLLGWEEFKRNWGRMW 145 (153)
T ss_pred CcccHHHHHHhHHHHH
Confidence 9999877776665443
No 288
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.23 E-value=6 Score=26.48 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhhhc-CCchHHHHHhHHHHHHH
Q psy17628 150 FIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICI 183 (338)
Q Consensus 150 ~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~ 183 (338)
+..++.....||+.||| |.++..++.+++.+.+.
T Consensus 53 IsGilVGa~iG~llD~~agTsPwglIv~lllGf~A 87 (116)
T COG5336 53 ISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGA 87 (116)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 44455667788999985 77777666655554443
No 289
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=83.16 E-value=34 Score=30.69 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=29.1
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHH
Q psy17628 142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI 183 (338)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 183 (338)
+......++..++..++++.+.+|+|-+....+.-++..++.
T Consensus 322 G~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~ 363 (491)
T PF03219_consen 322 GKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG 363 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence 334555677777777888999999998887776544444433
No 290
>PRK09609 hypothetical protein; Provisional
Probab=82.60 E-value=26 Score=28.89 Aligned_cols=33 Identities=9% Similarity=0.062 Sum_probs=17.1
Q ss_pred hhHHHhhhhhhhHHHH-HHHHHhhhccCCchhHHhhc
Q psy17628 16 YEDYTIICLSCLVIPV-LNLLVFLIVAPETPVYLLSK 51 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~-~~~~~~~~~~pesp~~l~~~ 51 (338)
|...|.+. +.++. +.+++.+++..-..+|...+
T Consensus 78 ffPgFTLs---a~l~GlI~Glf~~~~fk~~~~~f~~~ 111 (312)
T PRK09609 78 YHPYYTLA---AMVYGFIPGIVGWFFFKFGKKFFGKE 111 (312)
T ss_pred cCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 66666555 44333 33445555555555665443
No 291
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=82.10 E-value=32 Score=30.60 Aligned_cols=43 Identities=26% Similarity=0.217 Sum_probs=27.6
Q ss_pred hHHHHHH-HHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHH
Q psy17628 145 QNIVGFI-QVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALG 187 (338)
Q Consensus 145 ~~~~~~~-~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 187 (338)
....++. .++...+++.+.+|.|-....++.-+++.++.+++.
T Consensus 327 ~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~litg~lFF 370 (509)
T COG3202 327 QIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLITGVLFF 370 (509)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4445555 445557788899998887777666665555544433
No 292
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=81.26 E-value=2 Score=29.76 Aligned_cols=31 Identities=6% Similarity=0.052 Sum_probs=18.9
Q ss_pred hhHHHhhhhhhhHH-H-HHHHHHhhhccCCchh
Q psy17628 16 YEDYTIICLSCLVI-P-VLNLLVFLIVAPETPV 46 (338)
Q Consensus 16 Wr~~f~i~~~~~~~-~-~~~~~~~~~~~pesp~ 46 (338)
.|.+|++...++.. + +++-+++++++|+.|.
T Consensus 31 VRl~~vl~~~~~~~~~~ll~Y~i~w~~lp~~p~ 63 (121)
T TIGR02978 31 VRILVVSALLFGGGFFVLVAYIALWLLLDKKPI 63 (121)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcc
Confidence 79988887332221 1 2234567788898875
No 293
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=80.92 E-value=2.7 Score=25.06 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=20.6
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCch
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETP 45 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp 45 (338)
+|.+|.+...++..++++-+++++.+|+.|
T Consensus 31 vRl~~v~l~~~~~~~~l~Y~~~w~~lP~~~ 60 (61)
T PF04024_consen 31 VRLIFVVLTFFTGGGILLYLILWLLLPKEP 60 (61)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 899998883333335555666778889876
No 294
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.67 E-value=3.8 Score=27.37 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=28.8
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628 235 TPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT 270 (338)
Q Consensus 235 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (338)
.++.++.+.++-...-.+++.+....+|++++++--
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~ag 71 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAG 71 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345678888888888888888888999999987653
No 295
>KOG3880|consensus
Probab=79.23 E-value=3.1 Score=34.23 Aligned_cols=56 Identities=16% Similarity=0.055 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q psy17628 206 LPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTF 261 (338)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 261 (338)
+++....++-+..+.+..+..+--+.+-.+++.|-.+++.....-.+|-.++..+.
T Consensus 343 ~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 343 WIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred HHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence 33444444444444443333333344445678899999988777777766665544
No 296
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=76.89 E-value=59 Score=29.57 Aligned_cols=68 Identities=3% Similarity=-0.033 Sum_probs=32.3
Q ss_pred HHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccC-CCCCcchhhHHHHHHHHHHHHHHHHhhhh
Q psy17628 92 LVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNS-KIISPNYGQNIVGFIQVIMTFFSSLLVDK 165 (338)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 165 (338)
-.|+||.|+. ..++..++....+... ......++...|+ ++...+.+.....+..++++.++|+.+-|
T Consensus 251 hgDVFR~P~~--~~lls~lvG~G~Qll~----~~~~~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~ 319 (521)
T PF02990_consen 251 HGDVFRPPKH--PMLLSALVGTGIQLLF----MALVTLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSAR 319 (521)
T ss_pred hHHHhcCcCC--chHHHhHhcchhhhhH----HHHHHHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHH
Confidence 4578888753 3444444444444322 2222222333332 44444555555555555555555555544
No 297
>KOG3880|consensus
Probab=75.30 E-value=2.3 Score=34.92 Aligned_cols=133 Identities=10% Similarity=0.105 Sum_probs=58.9
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhc--CCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhc
Q psy17628 142 NYGQNIVGFIQVIMTFFSSLLVDKA--GRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFS 219 (338)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (338)
+.....-.+-..+..+.+.+..||+ |.|..+ ..++.+.+.++.++. ++.+..+....+. ..+
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~--~v~~sa~s~~lVafs------------~s~~~sL~GV~~a--Sis 128 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIAL--VVLLSALSFFLVAFS------------NSVPMSLLGVVFA--SIS 128 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHH--HHHHHhcceEEEEec------------cchhHHHhhhhhh--hhc
Confidence 3444444555666777788888875 444333 333344444333332 1122223333333 333
Q ss_pred ccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--hcccceeehhhhHHHHHHHHHHHhhccC
Q psy17628 220 VGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVER--AFGTGVAFGTFAVYCIIGTFFVYFVVPE 294 (338)
Q Consensus 220 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (338)
.+.+-+.+.-++..+|+..-+ +.....+. ++.++..-...+.+ ....+.+.++...+.++.+...++.+++
T Consensus 129 sGlGEiTFL~lss~Y~~~~i~---~WSSGTGg-AGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~ 201 (409)
T KOG3880|consen 129 SGLGEITFLALSSRYPSIVIA---GWSSGTGG-AGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS 201 (409)
T ss_pred CCcceeehhhhhccCCCceec---cccCCCCc-chhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence 444444444445555543321 11111111 11222222222222 2334556667777776666555555543
No 298
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=73.86 E-value=14 Score=31.84 Aligned_cols=20 Identities=10% Similarity=0.394 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhhhcC
Q psy17628 148 VGFIQVIMTFFSSLLVDKAG 167 (338)
Q Consensus 148 ~~~~~~~~~~~~g~l~d~~g 167 (338)
..+..++.....|++..|.|
T Consensus 4 ~~i~~i~~ii~~G~~~~~~~ 23 (385)
T PF03547_consen 4 SAILPIFLIILLGYLLGRFG 23 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 34455556666777777654
No 299
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=72.43 E-value=7.3 Score=26.33 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=22.4
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCch
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETP 45 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp 45 (338)
|+.+|++. ..++++++.+.+.+.||+.
T Consensus 59 we~~~f~~---~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 59 WELPFFFG---FSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred hHHHHHHH---HHHHHHHHHHHHHcCCCCC
Confidence 99999998 6777777777888889875
No 300
>COG2119 Predicted membrane protein [Function unknown]
Probab=69.18 E-value=29 Score=26.14 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHH
Q psy17628 147 IVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAIC 182 (338)
Q Consensus 147 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 182 (338)
...+++.++.+.+.++++|+..|.+...+.++..+.
T Consensus 142 g~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~f 177 (190)
T COG2119 142 GMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIF 177 (190)
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 345666777788889999999999887775554443
No 301
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=68.87 E-value=1e+02 Score=28.96 Aligned_cols=14 Identities=14% Similarity=0.092 Sum_probs=9.6
Q ss_pred hhHHHhhhhhhhHHHHH
Q psy17628 16 YEDYTIICLSCLVIPVL 32 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~ 32 (338)
|...|.+. +++.++
T Consensus 160 ~~~aF~i~---~i~m~i 173 (654)
T TIGR00926 160 YPLAFGVP---AILMIL 173 (654)
T ss_pred hHHHHHHH---HHHHHH
Confidence 77888888 554444
No 302
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=68.27 E-value=36 Score=23.43 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=26.2
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHH
Q psy17628 142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDIC 178 (338)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 178 (338)
+.......++..++..+.+.+.|..|.+..+......
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (141)
T TIGR00880 90 GLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAIL 126 (141)
T ss_pred HHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHH
Confidence 4555666778888888889998888876665554333
No 303
>KOG4830|consensus
Probab=66.20 E-value=6.3 Score=31.62 Aligned_cols=50 Identities=24% Similarity=0.202 Sum_probs=39.9
Q ss_pred HHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHh---------hhhcCCchH
Q psy17628 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLL---------VDKAGRRPL 171 (338)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l---------~d~~grr~~ 171 (338)
+..+|+-.++++.|.++.+...++....+...+..++.|.. .||+|||+.
T Consensus 35 cWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 35 CWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 45667777888889999888888888888888888887644 479999864
No 304
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=65.11 E-value=27 Score=23.51 Aligned_cols=48 Identities=10% Similarity=0.048 Sum_probs=38.7
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHH
Q psy17628 139 ISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGAL 186 (338)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 186 (338)
...+-....++-..++.+++.++..|+....+.=.+|..++.++..++
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI 101 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII 101 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe
Confidence 466778889999999999999999999888877777776666655443
No 305
>PRK02237 hypothetical protein; Provisional
Probab=62.24 E-value=31 Score=23.31 Aligned_cols=48 Identities=10% Similarity=-0.020 Sum_probs=38.3
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHH
Q psy17628 139 ISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGAL 186 (338)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 186 (338)
.+.+-....++-..++.+++.++..|+...-+.=.+|..++.++..++
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 346778889999999999999999999887777777776666665443
No 306
>PRK10263 DNA translocase FtsK; Provisional
Probab=57.60 E-value=57 Score=33.05 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcC
Q psy17628 147 IVGFIQVIMTFFSSLLVDKAG 167 (338)
Q Consensus 147 ~~~~~~~~~~~~~g~l~d~~g 167 (338)
+.+.++.+|..+...+..-||
T Consensus 60 V~Nl~GiVGA~LAD~L~~LFG 80 (1355)
T PRK10263 60 IHNLGGMPGAWLADTLFFIFG 80 (1355)
T ss_pred cccccchHHHHHHHHHHHHHh
Confidence 344555666666665555555
No 307
>KOG1278|consensus
Probab=57.04 E-value=65 Score=29.09 Aligned_cols=38 Identities=11% Similarity=0.047 Sum_probs=26.7
Q ss_pred HHHHhccC-CCCCcchhhHHHHHHHHHHHHHHHHhhhhc
Q psy17628 129 RILIATNS-KIISPNYGQNIVGFIQVIMTFFSSLLVDKA 166 (338)
Q Consensus 129 ~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 166 (338)
.++.-.|+ ++..-|.+.+...+..++..+++|+.+-|.
T Consensus 348 i~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rl 386 (628)
T KOG1278|consen 348 IFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARL 386 (628)
T ss_pred HHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhh
Confidence 33444443 777777778877777788888888887764
No 308
>COG1422 Predicted membrane protein [Function unknown]
Probab=56.76 E-value=88 Score=23.98 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=10.9
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCC
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPE 43 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pe 43 (338)
-.++-++. +++..+..-+...++-|
T Consensus 46 p~lvilV~---avi~gl~~~i~~~~liD 70 (201)
T COG1422 46 PHLVILVA---AVITGLYITILQKLLID 70 (201)
T ss_pred cHHHHHHH---HHHHHHHHHHHHHHhcc
Confidence 34444444 45554444444433333
No 309
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=55.95 E-value=78 Score=27.87 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHH
Q psy17628 148 VGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGY 188 (338)
Q Consensus 148 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 188 (338)
+++..+..++.+-++.+.+.++++..+=.++.+++..++..
T Consensus 300 YgiLFI~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~lFYl 340 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELLSKLRIHPIQYLLVGLALVLFYL 340 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH
Confidence 34444555667777888888888776655555555554443
No 310
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=55.63 E-value=96 Score=24.06 Aligned_cols=9 Identities=0% Similarity=-0.083 Sum_probs=3.3
Q ss_pred HHHHHHHhh
Q psy17628 155 MTFFSSLLV 163 (338)
Q Consensus 155 ~~~~~g~l~ 163 (338)
+.++...+.
T Consensus 123 ~G~~~~~~~ 131 (206)
T PF06570_consen 123 GGLVFYFIF 131 (206)
T ss_pred HHHHHHHHH
Confidence 333333333
No 311
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=53.57 E-value=66 Score=21.56 Aligned_cols=31 Identities=6% Similarity=-0.023 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhhcCCchHHHHHhHHHHHHH
Q psy17628 153 VIMTFFSSLLVDKAGRRPLLLISDICMAICI 183 (338)
Q Consensus 153 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 183 (338)
++|.+++-||-.+++-.+.+.+.+++.+++.
T Consensus 57 l~G~~lG~WLD~~~~t~~~~tl~~lllGv~~ 87 (100)
T TIGR02230 57 LLGVAVGIWLDRHYPSPFSWTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 3444555555556777665555544444443
No 312
>KOG3810|consensus
Probab=50.14 E-value=63 Score=27.62 Aligned_cols=126 Identities=10% Similarity=-0.063 Sum_probs=61.0
Q ss_pred HHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCc
Q psy17628 157 FFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP 236 (338)
Q Consensus 157 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 236 (338)
+..-.+.|...-|++++.-.+.......++.+. ...+..-++-..++. ....-...++++=+..++
T Consensus 60 vpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g------------~sV~~mQvlE~FyG~--~tAaEIAYysYIYs~Vd~ 125 (433)
T KOG3810|consen 60 VPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFG------------PSVKAMQVLEFFYGP--ATAAEIAYYSYIYSKVDP 125 (433)
T ss_pred HHHHHHhhhhhcceeeeeeccchhHHHHHHHhc------------CCchheeeehhhcCh--HHHHHHhhhheeeeecCH
Confidence 344457888888887766544444433333221 111111111111111 111223344677777888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-eeehhhhHHHHHHHHHHHhhccCCC
Q psy17628 237 DVKGLALGVICILGSLIEFVVVKTFDDVERAFGTG-VAFGTFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 237 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
+.+-++.|.+....-.|-+.+..+...++...... ...-.........+.+..+++|..+
T Consensus 126 ~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~ 186 (433)
T KOG3810|consen 126 EMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVK 186 (433)
T ss_pred HHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCc
Confidence 88888888877766666555555444443322211 1122233333333344445577655
No 313
>PRK11715 inner membrane protein; Provisional
Probab=50.04 E-value=1e+02 Score=27.22 Aligned_cols=41 Identities=7% Similarity=0.143 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHH
Q psy17628 148 VGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGY 188 (338)
Q Consensus 148 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 188 (338)
+++..+..++.+-++.+...++++.-+=.++.+++..++..
T Consensus 306 YgiLFI~LTF~~fFlfE~~~~~~iHpiQYlLVGlAl~lFYL 346 (436)
T PRK11715 306 YAILFIALTFAAFFLFELLKKLRIHPVQYLLVGLALVLFYL 346 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceecHHHHHHHHHHHHHHHH
Confidence 34444556667777888888888766655555555544443
No 314
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=49.58 E-value=1.6e+02 Score=24.95 Aligned_cols=12 Identities=17% Similarity=-0.202 Sum_probs=4.9
Q ss_pred chHHHHHHHHHH
Q psy17628 101 TVKATIVIVGLL 112 (338)
Q Consensus 101 ~~~~~~~~~~~~ 112 (338)
+.+.-+++..++
T Consensus 131 y~~~~~~gv~i~ 142 (334)
T PF06027_consen 131 YSWFHILGVLIC 142 (334)
T ss_pred hhHHHHHHHHHH
Confidence 444444444433
No 315
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=48.51 E-value=5.9 Score=31.70 Aligned_cols=13 Identities=8% Similarity=0.529 Sum_probs=0.0
Q ss_pred HHHHHhhccCCCC
Q psy17628 285 TFFVYFVVPETKN 297 (338)
Q Consensus 285 ~~~~~~~~~~~~~ 297 (338)
++++|.++.++++
T Consensus 178 aiLIWlY~H~~~~ 190 (381)
T PF05297_consen 178 AILIWLYVHDQRH 190 (381)
T ss_dssp -------------
T ss_pred HHHHHHHhcCCCC
Confidence 3455666666553
No 316
>KOG0055|consensus
Probab=47.28 E-value=3e+02 Score=28.15 Aligned_cols=15 Identities=13% Similarity=0.270 Sum_probs=12.5
Q ss_pred hhHHHhhhhhhhHHHHHH
Q psy17628 16 YEDYTIICLSCLVIPVLN 33 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~ 33 (338)
||...... +..|++.
T Consensus 808 W~lalv~l---a~~Pll~ 822 (1228)
T KOG0055|consen 808 WRLALVVL---ATFPLLI 822 (1228)
T ss_pred HHHHHHHH---HHHHHHH
Confidence 99999888 7887773
No 317
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=47.19 E-value=43 Score=26.94 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=12.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q psy17628 237 DVKGLALGVICILGSLIEFVVVKTF 261 (338)
Q Consensus 237 ~~r~~~~~~~~~~~~~~~~~~~~~~ 261 (338)
-.|..++|+...+.+....+..+..
T Consensus 75 ii~~iGLglg~liW~s~n~l~Gw~~ 99 (254)
T PF07857_consen 75 IIKTIGLGLGMLIWGSVNCLTGWAS 99 (254)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3455556655555544444444433
No 318
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=45.40 E-value=1.5e+02 Score=23.32 Aligned_cols=36 Identities=6% Similarity=-0.032 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHH
Q psy17628 148 VGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI 183 (338)
Q Consensus 148 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 183 (338)
..+...+.-++.|.+.-|+++++...-+.=...++.
T Consensus 170 s~~~~~~aL~~~G~~~a~~~~~~~~~~~l~~~~iG~ 205 (218)
T cd02432 170 TIIATLLALALTGYVSARLGGASVLRAILRNVIWGA 205 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 334456666777888888887776655444444443
No 319
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=39.11 E-value=1.9e+02 Score=22.82 Aligned_cols=32 Identities=9% Similarity=-0.002 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhhcCCchHHHHHhHHHHHHH
Q psy17628 152 QVIMTFFSSLLVDKAGRRPLLLISDICMAICI 183 (338)
Q Consensus 152 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 183 (338)
..+.-.+.|++.-+++.++....+.-...++.
T Consensus 180 ~~~~L~~~G~~~~~~~~~~~~~~~l~~~~~G~ 211 (225)
T cd02434 180 VAFTLFLLGSFKSKLYNGKWIISGIIMLINGA 211 (225)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 45556667777777777766554443333333
No 320
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=38.89 E-value=11 Score=23.75 Aligned_cols=20 Identities=10% Similarity=0.358 Sum_probs=11.7
Q ss_pred echhhhhhhcch---hhHHHhhh
Q psy17628 4 SGILYTYVIGSL---YEDYTIIC 23 (338)
Q Consensus 4 ~G~~~~~~i~~~---Wr~~f~i~ 23 (338)
++.+++.++|.+ -+..+++.
T Consensus 19 ~~~iisfi~Gy~~q~~~~~~~~~ 41 (76)
T PF06645_consen 19 ISAIISFIVGYITQSFSYTFYIY 41 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666665 56666555
No 321
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=38.52 E-value=1.5e+02 Score=21.41 Aligned_cols=40 Identities=15% Similarity=0.082 Sum_probs=25.0
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHH
Q psy17628 135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (338)
Q Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 174 (338)
|++..+.-....+.++.-.++.+++.+++|+.++-..+.+
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~ 107 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVI 107 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4444444444555666667777777777888777665544
No 322
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=38.33 E-value=53 Score=16.11 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=5.0
Q ss_pred HHHhhhccCCchh
Q psy17628 34 LLVFLIVAPETPV 46 (338)
Q Consensus 34 ~~~~~~~~pesp~ 46 (338)
.+....+.+|.||
T Consensus 16 ilffAI~FRePPr 28 (29)
T PF01405_consen 16 ILFFAIFFREPPR 28 (29)
T ss_dssp HHHHHHHSS----
T ss_pred HHHhhhhccCCCC
Confidence 3344556688885
No 323
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=38.00 E-value=1.8e+02 Score=22.54 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=22.2
Q ss_pred ccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccce-eehhhhHHH
Q psy17628 232 ELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGV-AFGTFAVYC 281 (338)
Q Consensus 232 e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 281 (338)
+-.+++.|-+..--......+...+.......+.+.+|... .+-+.+++.
T Consensus 29 ~~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGii 79 (203)
T PF01914_consen 29 KGMSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGII 79 (203)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 33444444333333333333333344445556667667544 333444433
No 324
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=37.16 E-value=26 Score=23.68 Aligned_cols=36 Identities=11% Similarity=-0.124 Sum_probs=23.6
Q ss_pred HHHHhcccceeehhhhHHHHHHHHHHHhhccCCCCC
Q psy17628 263 DVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNK 298 (338)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (338)
...+..+|..++++...++++.+.+.+.+.|++.-+
T Consensus 52 ~~~d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~ 87 (105)
T PF10183_consen 52 EKRDWEGWELPFFFGFSGSLVFGGVFLAYKPDTSIQ 87 (105)
T ss_pred CcchHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 344566777777776666666666666667877543
No 325
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=35.92 E-value=25 Score=24.89 Aligned_cols=10 Identities=0% Similarity=-0.077 Sum_probs=4.0
Q ss_pred eeehhhhHHH
Q psy17628 272 VAFGTFAVYC 281 (338)
Q Consensus 272 ~~~~~~~~~~ 281 (338)
|.++++.+++
T Consensus 2 W~l~~iii~~ 11 (130)
T PF12273_consen 2 WVLFAIIIVA 11 (130)
T ss_pred eeeHHHHHHH
Confidence 4444433333
No 326
>PF12832 MFS_1_like: MFS_1 like family
Probab=35.73 E-value=1.1e+02 Score=19.24 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeh
Q psy17628 240 GLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFG 275 (338)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (338)
..-.|+...+..+...+++++.+.+.|.++.+....
T Consensus 34 ~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l 69 (77)
T PF12832_consen 34 PSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVIL 69 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHH
Confidence 334566677777788889999999999888654443
No 327
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=34.41 E-value=13 Score=30.91 Aligned_cols=10 Identities=30% Similarity=0.577 Sum_probs=0.0
Q ss_pred eeeeccCCchh
Q psy17628 228 VMMGELFTPDV 238 (338)
Q Consensus 228 ~~~~e~~p~~~ 238 (338)
.+.+ .+|++.
T Consensus 20 glas-~~p~~y 29 (309)
T PF01733_consen 20 GLAS-LFPPKY 29 (309)
T ss_dssp -----------
T ss_pred HHHh-cCCHHH
Confidence 4444 466654
No 328
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=33.67 E-value=2.3e+02 Score=22.10 Aligned_cols=56 Identities=7% Similarity=0.005 Sum_probs=29.5
Q ss_pred HHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHH
Q psy17628 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI 183 (338)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 183 (338)
.....+|+++.. + .........+...+.-.+.|.+..|+..++....+.-...++.
T Consensus 146 ~liPllp~~~~~-~-----~~~a~~~s~~~~~~~L~~~G~~~a~~~~~~~~~~~l~~~~~G~ 201 (213)
T PF01988_consen 146 GLIPLLPYFFLP-S-----VSEAFIASIAVTILALFILGYFKARISGQSWWRSGLEMLLIGL 201 (213)
T ss_pred HHHHHHHHHHhh-h-----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 445555665543 1 0133444445555556677777777777666555444444433
No 329
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=33.45 E-value=68 Score=15.94 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=7.8
Q ss_pred HHhhhccCCchh
Q psy17628 35 LVFLIVAPETPV 46 (338)
Q Consensus 35 ~~~~~~~pesp~ 46 (338)
+....+.+|+||
T Consensus 17 iFFAIfFRepPr 28 (31)
T PRK11875 17 LFFAIAFRDPPK 28 (31)
T ss_pred HHHhhhccCCCC
Confidence 344556789886
No 330
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=32.91 E-value=47 Score=23.74 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=17.7
Q ss_pred eeccCCchhhhhHHHHHHHHHHHH
Q psy17628 230 MGELFTPDVKGLALGVICILGSLI 253 (338)
Q Consensus 230 ~~e~~p~~~r~~~~~~~~~~~~~~ 253 (338)
+.|++|+..|....+..+......
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~~~ 83 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSSAV 83 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHH
Confidence 578999999988877766554443
No 331
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=31.78 E-value=1.8e+02 Score=23.15 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q psy17628 147 IVGFIQVIMTFFSSLLVDKA 166 (338)
Q Consensus 147 ~~~~~~~~~~~~~g~l~d~~ 166 (338)
...+++.+++++-|.++||.
T Consensus 88 fs~v~~~IAapFng~lAEkv 107 (250)
T COG2981 88 FSTVANLIAAPFNGLLAEKV 107 (250)
T ss_pred HHHHHHHHHhhhhhHHHHHH
Confidence 34556667777778888874
No 332
>CHL00031 psbT photosystem II protein T
Probab=31.21 E-value=80 Score=16.01 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=8.1
Q ss_pred HHhhhccCCchh
Q psy17628 35 LVFLIVAPETPV 46 (338)
Q Consensus 35 ~~~~~~~pesp~ 46 (338)
+....+.+|.||
T Consensus 17 lFFAI~FRePPr 28 (33)
T CHL00031 17 IFFAIFFREPPK 28 (33)
T ss_pred HHHhheecCCCC
Confidence 344556789886
No 333
>COG3462 Predicted membrane protein [Function unknown]
Probab=30.90 E-value=1.4e+02 Score=20.22 Aligned_cols=10 Identities=30% Similarity=0.076 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q psy17628 55 KDAEKSLLIL 64 (338)
Q Consensus 55 ~~a~~~l~~~ 64 (338)
+.|++.++.-
T Consensus 88 sRA~eIlkER 97 (117)
T COG3462 88 SRAEEILKER 97 (117)
T ss_pred cHHHHHHHHH
Confidence 4555555443
No 334
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=30.65 E-value=92 Score=20.71 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcCCc
Q psy17628 145 QNIVGFIQVIMTFFSSLLVDKAGRR 169 (338)
Q Consensus 145 ~~~~~~~~~~~~~~~g~l~d~~grr 169 (338)
.....+...+.+++.|.+.||..||
T Consensus 81 ~~~~~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 81 DWITFAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4455666677889999999999876
No 335
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=30.13 E-value=1.9e+02 Score=22.00 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCC
Q psy17628 146 NIVGFIQVIMTFFSSLLVDKAGR 168 (338)
Q Consensus 146 ~~~~~~~~~~~~~~g~l~d~~gr 168 (338)
.-+-++..++..+.|++.||..+
T Consensus 89 gGyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 89 GGYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhc
Confidence 34567778889999999999885
No 336
>KOG4255|consensus
Probab=29.43 E-value=3.6e+02 Score=23.03 Aligned_cols=20 Identities=15% Similarity=0.529 Sum_probs=9.7
Q ss_pred hHHHHHhHHHHHHHHHHHHH
Q psy17628 170 PLLLISDICMAICIGALGYY 189 (338)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~ 189 (338)
+++..-.....++.+++++.
T Consensus 80 Piif~ll~~a~v~~l~lafl 99 (439)
T KOG4255|consen 80 PIIFVLLLLACVCQLGLAFL 99 (439)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 34444444445565555543
No 337
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=28.82 E-value=1e+02 Score=17.28 Aligned_cols=11 Identities=27% Similarity=0.136 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q psy17628 252 LIEFVVVKTFD 262 (338)
Q Consensus 252 ~~~~~~~~~~~ 262 (338)
+|+.++.++.+
T Consensus 6 iGa~vGg~l~~ 16 (48)
T PF04226_consen 6 IGAFVGGWLFG 16 (48)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 338
>KOG4112|consensus
Probab=28.66 E-value=92 Score=20.39 Aligned_cols=15 Identities=7% Similarity=0.124 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhccc
Q psy17628 256 VVVKTFDDVERAFGT 270 (338)
Q Consensus 256 ~~~~~~~~~~~~~~~ 270 (338)
+...+.|...+..++
T Consensus 37 iVg~i~Gf~~Qqls~ 51 (101)
T KOG4112|consen 37 IVGFIYGFAQQQLSV 51 (101)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344566666666665
No 339
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=28.09 E-value=95 Score=22.35 Aligned_cols=23 Identities=9% Similarity=0.277 Sum_probs=16.9
Q ss_pred eeccCCchhhhhHHHHHHHHHHH
Q psy17628 230 MGELFTPDVKGLALGVICILGSL 252 (338)
Q Consensus 230 ~~e~~p~~~r~~~~~~~~~~~~~ 252 (338)
+.|++|+..|....+..+.....
T Consensus 58 LkDm~Pp~~R~~i~~~~s~t~s~ 80 (145)
T TIGR00986 58 LKDIVPPTTRGWIYHKYSTTTNF 80 (145)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHH
Confidence 57899999998877766555444
No 340
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.99 E-value=1e+02 Score=20.90 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=9.1
Q ss_pred HHhhcCChHHHHHHHHHHhCCC
Q psy17628 47 YLLSKKRRKDAEKSLLILRGPN 68 (338)
Q Consensus 47 ~l~~~~~~~~a~~~l~~~~~~~ 68 (338)
+...+.+.++.+..+.++...+
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n 50 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARN 50 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443333
No 341
>PF14851 FAM176: FAM176 family
Probab=27.88 E-value=57 Score=23.85 Aligned_cols=14 Identities=7% Similarity=-0.152 Sum_probs=5.3
Q ss_pred hhhHHHHHHHHHHH
Q psy17628 276 TFAVYCIIGTFFVY 289 (338)
Q Consensus 276 ~~~~~~~~~~~~~~ 289 (338)
+.+++..+.+.++.
T Consensus 27 v~gVC~GLlLtLcl 40 (153)
T PF14851_consen 27 VSGVCAGLLLTLCL 40 (153)
T ss_pred HHHHHHHHHHHHHH
Confidence 34443333333333
No 342
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=27.17 E-value=21 Score=28.80 Aligned_cols=13 Identities=23% Similarity=0.100 Sum_probs=0.0
Q ss_pred hcCCchHHHHHhH
Q psy17628 165 KAGRRPLLLISDI 177 (338)
Q Consensus 165 ~~grr~~~~~~~~ 177 (338)
-|.||.+.-.+.+
T Consensus 71 lF~RrLLCPLGlL 83 (381)
T PF05297_consen 71 LFKRRLLCPLGLL 83 (381)
T ss_dssp -------------
T ss_pred HHHHhhcCcchHH
Confidence 4556654444433
No 343
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=26.04 E-value=3.8e+02 Score=25.65 Aligned_cols=31 Identities=26% Similarity=0.286 Sum_probs=16.5
Q ss_pred HHHHHhhhhc----CCchHHHHHhHHHHHHHHHHH
Q psy17628 157 FFSSLLVDKA----GRRPLLLISDICMAICIGALG 187 (338)
Q Consensus 157 ~~~g~l~d~~----grr~~~~~~~~~~~~~~~~~~ 187 (338)
.+++-++|.= ||.+-++++.++.+++.+...
T Consensus 41 ~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ 75 (701)
T TIGR01667 41 IIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQ 75 (701)
T ss_pred hHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567754 345555565555555554443
No 344
>KOG3097|consensus
Probab=25.97 E-value=2e+02 Score=24.49 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=36.2
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHH
Q psy17628 137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA 180 (338)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 180 (338)
.....+..+..+++...+.+.+.|.++.++||-+....+.+...
T Consensus 308 Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l 351 (390)
T KOG3097|consen 308 GVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHL 351 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 34466788889999999999999999999999999887755443
No 345
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=25.92 E-value=1.8e+02 Score=19.11 Aligned_cols=8 Identities=0% Similarity=-0.750 Sum_probs=3.1
Q ss_pred hhHHHhhh
Q psy17628 16 YEDYTIIC 23 (338)
Q Consensus 16 Wr~~f~i~ 23 (338)
|-.+++..
T Consensus 38 ~~lP~~~L 45 (91)
T PF08285_consen 38 PYLPFYAL 45 (91)
T ss_pred HHhhHHHH
Confidence 33334433
No 346
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=25.10 E-value=3e+02 Score=20.66 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhhc-CCchHHHHHhHHHHHHH
Q psy17628 148 VGFIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICI 183 (338)
Q Consensus 148 ~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~ 183 (338)
.++.+++++++.-.+-.|+ |.-+-+.-|.+..++..
T Consensus 77 ~gv~Si~aAllY~~~l~k~~g~W~Gi~YG~~~W~ivF 113 (173)
T PF11085_consen 77 IGVFSIVAALLYYALLKKFKGPWPGILYGLAWWAIVF 113 (173)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 4455556666655555554 33334444444444333
No 347
>KOG3097|consensus
Probab=24.78 E-value=4.5e+02 Score=22.58 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHH
Q psy17628 148 VGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAIC 182 (338)
Q Consensus 148 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 182 (338)
..+.-+..+++.+.+.+++|-|..+..+.......
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly 101 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY 101 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44555667777779999999999988775554443
No 348
>PRK10263 DNA translocase FtsK; Provisional
Probab=23.73 E-value=7.7e+02 Score=25.78 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=16.5
Q ss_pred hHHHhhhhhhhHHHHHHHHHhhhccCCchhHH
Q psy17628 17 EDYTIICLSCLVIPVLNLLVFLIVAPETPVYL 48 (338)
Q Consensus 17 r~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l 48 (338)
+...++. .++++++++.++-|-|..|.|.
T Consensus 24 E~~gIlL---lllAlfL~lALiSYsPsDPSwS 52 (1355)
T PRK10263 24 EALLILI---VLFAVWLMAALLSFNPSDPSWS 52 (1355)
T ss_pred HHHHHHH---HHHHHHHHHHHHhCCccCCccc
Confidence 3444444 5566555555555667777664
No 349
>KOG2881|consensus
Probab=23.15 E-value=1.8e+02 Score=23.61 Aligned_cols=9 Identities=33% Similarity=0.763 Sum_probs=3.7
Q ss_pred HHHHHHHhc
Q psy17628 300 LQQIQDELS 308 (338)
Q Consensus 300 ~~~~~~~~~ 308 (338)
.+|.+++..
T Consensus 163 ~eEVe~el~ 171 (294)
T KOG2881|consen 163 LEEVEAELA 171 (294)
T ss_pred HHHHHHHHH
Confidence 344444433
No 350
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=22.96 E-value=4e+02 Score=21.32 Aligned_cols=31 Identities=6% Similarity=-0.049 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchHHHHHhHH
Q psy17628 148 VGFIQVIMTFFSSLLVDKAGRRPLLLISDIC 178 (338)
Q Consensus 148 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 178 (338)
..++.+.-.++.-+++.|+|....+.++.+.
T Consensus 138 l~~~sl~~~~l~l~ls~~~g~~~si~ig~~g 168 (248)
T TIGR03733 138 LIIGSLFLYIIHLFVSFAFGMGASIGIGIVG 168 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 3444455556777888999976555555433
No 351
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=22.81 E-value=2.6e+02 Score=19.23 Aligned_cols=37 Identities=11% Similarity=0.058 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHH
Q psy17628 143 YGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICM 179 (338)
Q Consensus 143 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 179 (338)
.......+...++.+++|..+-|..++|-++.|....
T Consensus 38 ~~~~~~~~i~~ls~~~GG~~a~~~~~~kG~l~G~~~G 74 (116)
T PF12670_consen 38 ILPWLVVIIYILSVFIGGFYAGRKAGSKGWLHGLLVG 74 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 3445556666777888888877655555555554433
No 352
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=22.63 E-value=4e+02 Score=21.25 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhhhcCCchHHHHHhH
Q psy17628 153 VIMTFFSSLLVDKAGRRPLLLISDI 177 (338)
Q Consensus 153 ~~~~~~~g~l~d~~grr~~~~~~~~ 177 (338)
..-.++.-+++.|+|.-..+.++..
T Consensus 137 l~~i~l~l~ls~~~g~~~si~ig~~ 161 (241)
T TIGR03732 137 LWQIPLCLFLARKFGMFVSILVNLV 161 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566677777765444444443
No 353
>KOG1237|consensus
Probab=22.60 E-value=3e+02 Score=25.52 Aligned_cols=40 Identities=8% Similarity=-0.002 Sum_probs=31.8
Q ss_pred eeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17628 229 MMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF 268 (338)
Q Consensus 229 ~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (338)
+.-+-+|++.|+.++++......+|..+...+........
T Consensus 482 FfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 482 FFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred HhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445579999999999999999999988888876555444
No 354
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=22.45 E-value=2.8e+02 Score=21.60 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhhccC
Q psy17628 28 VIPVLNLLVFLIVAP 42 (338)
Q Consensus 28 ~~~~~~~~~~~~~~p 42 (338)
.+.++++++..+++|
T Consensus 62 ~FliL~~lL~k~~~~ 76 (204)
T PRK09174 62 TFGLFYLFMSRVILP 76 (204)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444455455555
No 355
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=22.38 E-value=6.8e+02 Score=24.11 Aligned_cols=24 Identities=17% Similarity=0.466 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhc
Q psy17628 143 YGQNIVGFIQVIMTFFSSLLVDKA 166 (338)
Q Consensus 143 ~~~~~~~~~~~~~~~~~g~l~d~~ 166 (338)
....+..+.+++..++.-.+.|+.
T Consensus 161 ~~sl~l~i~~l~~p~~~q~viD~V 184 (709)
T COG2274 161 LASLLLQLLALATPLFSQIVIDKV 184 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445566666677777777875
No 356
>PRK10527 hypothetical protein; Provisional
Probab=22.23 E-value=1.5e+02 Score=20.82 Aligned_cols=27 Identities=22% Similarity=0.173 Sum_probs=15.7
Q ss_pred hHHHhhhhhhhHHHHHHHHHhhh--ccCCchh
Q psy17628 17 EDYTIICLSCLVIPVLNLLVFLI--VAPETPV 46 (338)
Q Consensus 17 r~~f~i~~~~~~~~~~~~~~~~~--~~pesp~ 46 (338)
|+.+... |.+.+.++++..+ .+|-+|-
T Consensus 3 R~l~~~l---G~~~~~LG~iGi~LPlLPTTPF 31 (125)
T PRK10527 3 RIILIII---GWLAVVLGTLGVVLPLLPTTPF 31 (125)
T ss_pred hHHHHHH---HHHHHHHHHHHHhccCCCCcHH
Confidence 5666666 6666655555443 3666663
No 357
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=21.71 E-value=4.4e+02 Score=21.34 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q psy17628 147 IVGFIQVIMTFFSSLLVDKA 166 (338)
Q Consensus 147 ~~~~~~~~~~~~~g~l~d~~ 166 (338)
...+..++++++.+.+++|.
T Consensus 90 f~~v~~~IaaPF~~~lAE~V 109 (251)
T PRK04949 90 FSTLANFIAAPFNGLLAEKV 109 (251)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 44577788888899999886
No 358
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=21.52 E-value=5.4e+02 Score=22.35 Aligned_cols=30 Identities=10% Similarity=-0.012 Sum_probs=17.9
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHHhhh
Q psy17628 135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVD 164 (338)
Q Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 164 (338)
|-...+.+.+...+.....+|+.+.-++.|
T Consensus 39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~d 68 (508)
T COG4262 39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLD 68 (508)
T ss_pred CCceeehHHHHHHHHHHhchhhhhhccccC
Confidence 435556666666666666666666555554
No 359
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=21.42 E-value=1.5e+02 Score=15.85 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=9.5
Q ss_pred hhhcCCchHHHHHhHHHHH
Q psy17628 163 VDKAGRRPLLLISDICMAI 181 (338)
Q Consensus 163 ~d~~grr~~~~~~~~~~~~ 181 (338)
+|--||-++.+++.+.-..
T Consensus 2 ~~ttGRIPLWlVgtv~G~~ 20 (40)
T PF01788_consen 2 ANTTGRIPLWLVGTVAGIA 20 (40)
T ss_dssp ---TTSS-HHHHHHHHHHH
T ss_pred CCCCCcccchHHHHHHHHH
Confidence 4556788887776554433
No 360
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=21.03 E-value=1.8e+02 Score=17.77 Aligned_cols=9 Identities=22% Similarity=0.482 Sum_probs=4.8
Q ss_pred HhhccCCCC
Q psy17628 289 YFVVPETKN 297 (338)
Q Consensus 289 ~~~~~~~~~ 297 (338)
-..+||..+
T Consensus 49 G~~LPe~s~ 57 (67)
T PF11511_consen 49 GLLLPERSR 57 (67)
T ss_dssp HHSSTTTCS
T ss_pred HHhCchhcc
Confidence 345676543
No 361
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=20.06 E-value=1.3e+02 Score=20.21 Aligned_cols=44 Identities=9% Similarity=-0.105 Sum_probs=32.9
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHH
Q psy17628 139 ISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAIC 182 (338)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 182 (338)
...+-....++-..++.++..++..|+...-+.=..|..++.++
T Consensus 55 ~a~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G 98 (109)
T COG1742 55 AAFGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAG 98 (109)
T ss_pred hhhhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhc
Confidence 34566777888888999999999999887766666665555443
Done!