Query psy17628
Match_columns 338
No_of_seqs 489 out of 1539
Neff 11.6
Searched_HMMs 29240
Date Fri Aug 16 18:55:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 7.2E-32 2.5E-36 236.9 21.4 279 16-312 199-483 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.8 3.3E-21 1.1E-25 167.3 6.5 256 3-290 165-432 (451)
3 3o7q_A L-fucose-proton symport 99.7 4.3E-17 1.5E-21 140.8 16.4 173 90-283 249-424 (438)
4 1pw4_A Glycerol-3-phosphate tr 99.7 1.1E-17 3.8E-22 145.0 11.3 182 106-297 30-212 (451)
5 2cfq_A Lactose permease; trans 99.7 1.2E-18 4.1E-23 149.5 4.1 162 123-297 239-405 (417)
6 3o7q_A L-fucose-proton symport 99.7 1.6E-16 5.6E-21 137.1 9.2 161 119-289 41-227 (438)
7 4aps_A DI-OR tripeptide H+ sym 99.7 2.7E-15 9.2E-20 131.5 16.4 170 122-296 301-476 (491)
8 2gfp_A EMRD, multidrug resista 99.6 1.4E-16 4.9E-21 134.7 5.5 166 119-297 15-180 (375)
9 4aps_A DI-OR tripeptide H+ sym 99.6 3.9E-16 1.3E-20 136.8 8.1 159 120-291 29-196 (491)
10 2xut_A Proton/peptide symporte 99.6 2.1E-14 7.2E-19 126.9 12.4 159 120-290 28-197 (524)
11 2gfp_A EMRD, multidrug resista 99.5 5E-16 1.7E-20 131.3 -3.1 218 4-275 135-360 (375)
12 4gc0_A D-xylose-proton symport 99.5 2.3E-14 7.7E-19 125.6 4.0 155 140-296 56-224 (491)
13 2xut_A Proton/peptide symporte 99.3 1.6E-12 5.5E-17 114.8 4.7 91 206-297 407-508 (524)
14 2cfq_A Lactose permease; trans 99.2 3.3E-12 1.1E-16 109.4 3.0 155 120-284 23-180 (417)
15 2g9p_A Antimicrobial peptide l 68.8 3.4 0.00012 17.9 1.6 15 158-172 2-16 (26)
16 3arc_T Photosystem II reaction 40.1 32 0.0011 16.6 2.5 12 35-46 17-28 (32)
17 3iyz_A Aquaporin-4; water tran 35.1 37 0.0013 27.5 3.8 21 269-289 245-265 (340)
18 2b6o_A Aquaporin-0, lens fiber 34.0 43 0.0015 26.0 4.0 24 269-292 199-222 (263)
19 2dw3_A Intrinsic membrane prot 26.6 78 0.0027 19.0 3.2 10 288-297 50-59 (77)
20 3d9s_A Aquaporin-5, AQP-5; aqu 23.9 37 0.0013 26.4 2.0 18 272-289 205-222 (266)
21 2zz9_A Aquaporin-4; water tran 22.6 1.7E+02 0.0059 23.3 5.6 21 269-289 206-226 (301)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=7.2e-32 Score=236.88 Aligned_cols=279 Identities=27% Similarity=0.467 Sum_probs=203.1
Q ss_pred hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Q psy17628 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (338)
Q Consensus 16 Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
||+.+.+. .++.++.++..+++||||||+..+++.+++++.+++...++...++..+. ++...++ ++.......
T Consensus 199 ~~~~~~~~----~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~ 272 (491)
T 4gc0_A 199 WRYMFASE----CIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEI-KHSLDHG-RKTGGRLLM 272 (491)
T ss_dssp HHHHHHTT----HHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHTTHHHH
T ss_pred hHHHhhhh----hhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHH-HHHHHhh-hhhhhHHHH
Confidence 88888888 45555577788899999999999999999999988876543222221111 1111111 111111122
Q ss_pred HhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHH
Q psy17628 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLIS 175 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 175 (338)
+ ..++.........+.++.+.+....|.+.+.+..+.+..+........++...++.++++++.||+|||+.++.+
T Consensus 273 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~ 348 (491)
T 4gc0_A 273 F----GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIG 348 (491)
T ss_dssp S----CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHH
T ss_pred h----cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccc
Confidence 2 223455566666677777888899999999988887777777778888899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHH
Q psy17628 176 DICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEF 255 (338)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~ 255 (338)
...+.++.+.++....... ..+..++...++..+++.++.++.+.+.+|++|++.|++++|+.+..+++++.
T Consensus 349 ~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~ 420 (491)
T 4gc0_A 349 ALGMAIGMFSLGTAFYTQA--------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANY 420 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccc--------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH
Confidence 8888888776665432221 22334444555555666777788888999999999999999999999999999
Q ss_pred HHHHHHHHHHH------hcccceeehhhhHHHHHHHHHHHhhccCCCCCCHHHHHHHhccccc
Q psy17628 256 VVVKTFDDVER------AFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKK 312 (338)
Q Consensus 256 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (338)
+++.+.+.+.+ ..++...+++++++++++.++.++++||||++++||+++..+++.+
T Consensus 421 i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 421 FVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence 98888776543 3455567888888999998888899999999999998877665433
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.83 E-value=3.3e-21 Score=167.25 Aligned_cols=256 Identities=12% Similarity=0.063 Sum_probs=161.9
Q ss_pred eechhhhhhhcch-------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHH
Q psy17628 3 VSGILYTYVIGSL-------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGEL 75 (338)
Q Consensus 3 ~~G~~~~~~i~~~-------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~ 75 (338)
.+|.++++.++.. ||+.|++. +++.++..++.++++||+|+....+.+.+. . .+.+.+.
T Consensus 165 ~~g~~~g~~~~~~l~~~~g~w~~~f~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~ 230 (451)
T 1pw4_A 165 NVGGGIPPLLFLLGMAWFNDWHAALYMP---AFCAILVALFAFAMMRDTPQSCGLPPIEEY----------K-NDYPDDY 230 (451)
T ss_dssp HHHHTSHHHHHHHHHHHTCCSTTCTHHH---HHHHHHHHHHHHHHCCCSSTTTCCCSCTTT----------C-CC-----
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHH---HHHHHHHHHHHHhhccCCHhhcCCCChhhh----------c-ccccccc
Confidence 3455555555533 99999999 788777677777889999865322111110 0 0000000
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHH
Q psy17628 76 DELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVI 154 (338)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ 154 (338)
+ ++..++....+...++.++++. ++...+..+...........+.|.++++ .|++..+.+.......++.++
T Consensus 231 ~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 303 (451)
T 1pw4_A 231 N--EKAEQELTAKQIFMQYVLPNKL-----LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP 303 (451)
T ss_dssp ----------CCTHHHHHHTSSCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHH
T ss_pred h--hhhhcccccccchHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 0 0000011111112344555442 2222222222333456677889999888 588998899999999999999
Q ss_pred HHHHHHHhhhhc--CCchHHHHHhHHHH-HHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeee
Q psy17628 155 MTFFSSLLVDKA--GRRPLLLISDICMA-ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMG 231 (338)
Q Consensus 155 ~~~~~g~l~d~~--grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
+.++.|+++||+ |||+.+..+..+.. ++.+++... ...+.+.......+.+.+.+.... ....++.
T Consensus 304 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 372 (451)
T 1pw4_A 304 GTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN----------PAGNPTVDMICMIVIGFLIYGPVM-LIGLHAL 372 (451)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC----------CTTCHHHHHHHHHHHHHHHTHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----------cccCHHHHHHHHHHHHHHHhchHH-HHHHHHH
Confidence 999999999999 99998887766555 333322211 001223333344444444443333 3337889
Q ss_pred ccCCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhcccceeehhhhHHHHHHHHHHHh
Q psy17628 232 ELFTPDVKGLALGVICILGSL-IEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYF 290 (338)
Q Consensus 232 e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (338)
|.+|++.|++++|+.+....+ +..+++.+.+.+.+..|+...+++.+++.+++.++.++
T Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 373 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999999999989888888777777776655544
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.74 E-value=4.3e-17 Score=140.78 Aligned_cols=173 Identities=13% Similarity=0.015 Sum_probs=121.3
Q ss_pred hHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHH-HHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcC
Q psy17628 90 KSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRI-LIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG 167 (338)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 167 (338)
.+++++++++..+...+. . +...........+.|.+ +++. |++..+.+.......++.+++.++.|+++||+|
T Consensus 249 ~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 323 (438)
T 3o7q_A 249 ASLSRLARIRHWRWAVLA-Q----FCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFA 323 (438)
T ss_dssp HHHHHHTTCSHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHhChHHHHHHHH-H----HHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777643322222 1 11222245666788888 8777 999999999999999999999999999999999
Q ss_pred CchHHHHHhHHHHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHH
Q psy17628 168 RRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVIC 247 (338)
Q Consensus 168 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 247 (338)
||+.+..+.++.+++.+++... ..........+.+++.+... +..+++..|.+|++ |+++.++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 388 (438)
T 3o7q_A 324 PHKVLAAYALIAMALCLISAFA-------------GGHVGLIALTLCSAFMSIQY-PTIFSLGIKNLGQD-TKYGSSFIV 388 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHTTHH-HHHHHHHHSSCGGG-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHc-------------CCcHHHHHHHHHHHHHHHHH-HHHHHHHHhhcccc-ccchhhHHH
Confidence 9999988887777766554432 11122333344444544443 44447778999976 888888776
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc-cceeehhhhHHHHH
Q psy17628 248 ILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCII 283 (338)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 283 (338)
.+.+++.++|.+.+.+.+..| ++..+.+.+++.++
T Consensus 389 -~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 389 -MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_dssp -HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 677999999999999999998 87777665444333
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.73 E-value=1.1e-17 Score=144.98 Aligned_cols=182 Identities=11% Similarity=0.015 Sum_probs=141.0
Q ss_pred HHHHHHHHHhhhcchHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHH
Q psy17628 106 IVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGA 185 (338)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 185 (338)
+....+..+...........+.|.+.++. .+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 108 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF 108 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 33333333333333445667788888888 89999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17628 186 LGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE 265 (338)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (338)
+++.... ..+.+..++...+.+.+.+....... ++++|.+|++.|++++++.+....+|..+++.+.+.+.
T Consensus 109 ~~~~~~~--------~~~~~~l~~~~~l~G~~~~~~~~~~~-~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 109 MGFVPWA--------TSSIAVMFVLLFLCGWFQGMGWPPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHCHHH--------HSSSSHHHHHHHHHHHHHHHTHHHHH-HHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHhhhhc--------cccHHHHHHHHHHHHHHhhhccchHH-HHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7662110 01234445555566665554444444 89999999999999999999999999999999999888
Q ss_pred Hhcc-cceeehhhhHHHHHHHHHHHhhccCCCC
Q psy17628 266 RAFG-TGVAFGTFAVYCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 266 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
+..+ |++.+++.+++.++..++.++.+||+++
T Consensus 180 ~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 180 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 8898 9999999888887777777777777644
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.73 E-value=1.2e-18 Score=149.46 Aligned_cols=162 Identities=12% Similarity=0.115 Sum_probs=106.0
Q ss_pred HHHhhHHHHHhc-c---CCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 123 VIFYLKRILIAT-N---SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 123 ~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
...+.|.++.+. + .+....+....+..++.+++.++.|+++||+|||+++..+..+.+++.+.+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--------- 309 (417)
T 2cfq_A 239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--------- 309 (417)
T ss_dssp HHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 334456555443 2 123334566667777888999999999999999999888776666654433221
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHhcccceeehhh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVI-CILGSLIEFVVVKTFDDVERAFGTGVAFGTF 277 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (338)
.+.+..++...+.+.+..... +..+.+++|.+|++.|+++.++. +....+++.++|.+.+.+.+..|+...|.+.
T Consensus 310 ---~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~ 385 (417)
T 2cfq_A 310 ---TSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp ---CSHHHHHHHTTHHHHHHHHHH-HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred ---ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence 011222222222222222111 22246889999999999999985 7788899999999999998888876777777
Q ss_pred hHHHHHHHHHHHhhccCCCC
Q psy17628 278 AVYCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~ 297 (338)
+++.+++.++.++..||+++
T Consensus 386 ~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 386 GLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHHHHHhhhcCCCc
Confidence 77777776665555565443
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.66 E-value=1.6e-16 Score=137.11 Aligned_cols=161 Identities=10% Similarity=-0.032 Sum_probs=125.5
Q ss_pred chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
.........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.++.+.++.+++.++......
T Consensus 41 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------- 113 (438)
T 3o7q_A 41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE------- 113 (438)
T ss_dssp HHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc-------
Confidence 3456777788888889999999999999999999999999999999999999999999999888877633211
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc--------
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVE-RAFG-------- 269 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------- 269 (338)
..+.+..++...+.+.+.+....... ++++|.+|++.|+.++++.+....+|..+++.+.+.+. +..+
T Consensus 114 --~~~~~~l~~~~~l~G~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~ 190 (438)
T 3o7q_A 114 --IMNYTLFLVGLFIIAAGLGCLETAAN-PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLD 190 (438)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHH
T ss_pred --cccHHHHHHHHHHHHhhHHHhhhhHH-HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 11234445556666666655544444 89999999999999999999999999999999998887 4443
Q ss_pred -----------------cceeehhhhHHHHHHHHHHH
Q psy17628 270 -----------------TGVAFGTFAVYCIIGTFFVY 289 (338)
Q Consensus 270 -----------------~~~~~~~~~~~~~~~~~~~~ 289 (338)
|++.+++.+.+..+..++.+
T Consensus 191 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 191 KMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 67777666666555554433
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.66 E-value=2.7e-15 Score=131.49 Aligned_cols=170 Identities=11% Similarity=0.005 Sum_probs=111.1
Q ss_pred HHHHhhHHHHHhc-cCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHH-----HHhHHHHHHHHHHHHHHHHhhc
Q psy17628 122 VVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLL-----ISDICMAICIGALGYYFYLLKL 195 (338)
Q Consensus 122 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 195 (338)
....+.+.+.++. +.+..+.+.......++.+++.++.+++.||+|||+... .+..+.+++.+++.........
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4aps_A 301 QGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT 380 (491)
T ss_dssp GGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC
T ss_pred hccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444556666654 666677888899999999999999999999999987654 5555555555544443211110
Q ss_pred ccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeh
Q psy17628 196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFG 275 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (338)
. .....+.......+.+.+.+... +..+.++.|.+|++.|++++|+.+....++..+++.+.+.+.+ .++...+.
T Consensus 381 ~---~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~ 455 (491)
T 4aps_A 381 S---GKVSPLWLVGSWALVILGEMLIS-PVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFS 455 (491)
T ss_dssp C---TTCCTHHHHHHHHHHHHHHHTTT-THHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHH
T ss_pred C---CCccHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 0 01123334444445554444433 3344789999999999999999999999999999998887654 35556777
Q ss_pred hhhHHHHHHHHHHHhhccCCC
Q psy17628 276 TFAVYCIIGTFFVYFVVPETK 296 (338)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~ 296 (338)
+.+++++++.++.+++.++.+
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 456 YFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766666555543
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.63 E-value=1.4e-16 Score=134.68 Aligned_cols=166 Identities=13% Similarity=0.059 Sum_probs=131.7
Q ss_pred chHHHHHhhHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
.........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------- 85 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--------- 85 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh---------
Confidence 34556667788888889999999999999999999999999999999999999999998888888776654
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehhhh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA 278 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
.+.+..++...+.+.+.+.... ...+++.|.+|+++|++++++.+....++..+++.+.+.+.+..+|+..+.+.+
T Consensus 86 ---~~~~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (375)
T 2gfp_A 86 ---SSLTVLIAASAMQGMGTGVGGV-MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL 161 (375)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred ---ccHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHH
Confidence 1223344445555555444333 333788999999999999999999999999999999999888889988888877
Q ss_pred HHHHHHHHHHHhhccCCCC
Q psy17628 279 VYCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~ 297 (338)
++.++..+...+..||+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 162 VLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHCcccCC
Confidence 7777666555566777643
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.63 E-value=3.9e-16 Score=136.79 Aligned_cols=159 Identities=15% Similarity=0.124 Sum_probs=123.5
Q ss_pred hHHHHHhhHHHHHh------ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhh-cCCchHHHHHhHHHHHHHHHHHHHHHH
Q psy17628 120 INVVIFYLKRILIA------TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYL 192 (338)
Q Consensus 120 ~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~ 192 (338)
++....+.+.++++ .|.+..+.++..+...++..++.+++|+++|| +|||+++..+.++.+++.+++...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--- 105 (491)
T 4aps_A 29 YYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--- 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC---
T ss_pred HHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh---
Confidence 44555566666554 79999999999999999999999999999999 899999999998888887766542
Q ss_pred hhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17628 193 LKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV--KGLALGVICILGSLIEFVVVKTFDDVERAFGT 270 (338)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (338)
.+.+..++...+.+.+.+....... ++++|.+|++. |+.++++.+....+|..++|.+.+.+.+..||
T Consensus 106 ---------~~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 175 (491)
T 4aps_A 106 ---------FGASALFGSIILIIIGTGFLKPNVS-TLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGY 175 (491)
T ss_dssp ---------CSTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred ---------hhHHHHHHHHHHHHHHHHhccchHH-HHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 1234445555556655554444444 89999999988 77788888899999999999999999999999
Q ss_pred ceeehhhhHHHHHHHHHHHhh
Q psy17628 271 GVAFGTFAVYCIIGTFFVYFV 291 (338)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~ 291 (338)
++.|++.++..+++.++..+.
T Consensus 176 ~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 176 HVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 998888766666655544443
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.56 E-value=2.1e-14 Score=126.88 Aligned_cols=159 Identities=15% Similarity=0.127 Sum_probs=120.7
Q ss_pred hHHHHHhhHHHHH-hcc------CCCCCcchhhHHHHHHHHHHHHHHHHhhhhc-CCchHHHHHhHHHHHHHHHHHHHHH
Q psy17628 120 INVVIFYLKRILI-ATN------SKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICIGALGYYFY 191 (338)
Q Consensus 120 ~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~ 191 (338)
++....+.+.++. +.| .+..+.++..+...++..++.+++|+++||+ |||+++..+.++.+++.+++.+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-- 105 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-- 105 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--
Confidence 4455566666655 468 9999999999999999999999999999999 99999999988888877766553
Q ss_pred HhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Q psy17628 192 LLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGV---ICILGSLIEFVVVKTFDDVERAF 268 (338)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 268 (338)
..+.+..++...+.+.+.+....... ++++|.+|++.|+++.+. .+....+|..++|.+.+.+.+..
T Consensus 106 ---------~~~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (524)
T 2xut_A 106 ---------EHSVQGFYTGLFLIALGSGGIKPLVS-SFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF 175 (524)
T ss_dssp ---------SSCHHHHHHHHHHHHHHHHTTHHHHH-HHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred ---------cccHHHHHHHHHHHHHhccccchhHH-HHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 10223344445555555554444444 789999999999876666 88889999999999999888888
Q ss_pred ccceeehhhhHHHHHHHHHHHh
Q psy17628 269 GTGVAFGTFAVYCIIGTFFVYF 290 (338)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~ 290 (338)
+|+..|++.+++.++..++.++
T Consensus 176 g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 176 GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888777766655544433
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.50 E-value=5e-16 Score=131.32 Aligned_cols=218 Identities=12% Similarity=-0.001 Sum_probs=133.7
Q ss_pred echhhhhhhcch------hhHHHhhhhhhhHHHHHHHHHhhhccCCchhHHhhcCChHHHHHHHHHHhCCCcchHHHHHH
Q psy17628 4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE 77 (338)
Q Consensus 4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 77 (338)
+|..+++.++.. ||+.|++. +++.++..++..+++||+|+...++
T Consensus 135 ~g~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 185 (375)
T 2gfp_A 135 VSPLLAPLIGGLLDTMWNWRACYLFL---LVLCAGVTFSMARWMPETRPVDAPR-------------------------- 185 (375)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHH---HHHHHHHHCCCCCSSCCCSTTTCCC--------------------------
T ss_pred HHHHhhHHHHHHHHHhccHHHHHHHH---HHHHHHHHHHHHHHCcccCCCCccc--------------------------
Confidence 455555555544 99999999 7777775555677889987531000
Q ss_pred HHHHHHHhhhhhhHHHHHHhCccchHHHHHHHHHHHHhhhcchHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHH
Q psy17628 78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMT 156 (338)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 156 (338)
++.+.++++.+++|..+... +..+...........+.|.+.++ .|.+..+.+.......++.+++.
T Consensus 186 --------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 252 (375)
T 2gfp_A 186 --------TRLLTSYKTLFGNSGFNCYL-----LMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA 252 (375)
T ss_dssp --------CCTTTCSTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred --------ccHHHHHHHHhcCcchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 00112334455544222211 11222222355666777887777 58888888999999999999999
Q ss_pred HHHHHhhhhcCCchHHHHHhHH-HHHHHHHHHHHHHHhhcccchhhhhchHHHHHHHHHHHhhcccccccceeeeeccCC
Q psy17628 157 FFSSLLVDKAGRRPLLLISDIC-MAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT 235 (338)
Q Consensus 157 ~~~g~l~d~~grr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 235 (338)
++.+++.||++++ +..+... ...+.......... ..+.+.......+.+.+.+...... ..++.|.+|
T Consensus 253 ~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~p 321 (375)
T 2gfp_A 253 WFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFG--------VMNVWTLLVPAALFFFGAGMLFPLA-TSGAMEPFP 321 (375)
T ss_dssp HHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHH--------HHHHHHHHHHHHHHHHHHHHTSSTT-HHHHHTHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc--------cccHHHHHHHHHHHHHHHHHhhHHH-HHHHHHhCC
Confidence 9999999999872 2233222 22221111111000 0122333344445555555444444 478899998
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeh
Q psy17628 236 PDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFG 275 (338)
Q Consensus 236 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (338)
+.|+++.|+.+....++..+++.+.+.+.+..++...+.
T Consensus 322 -~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~ 360 (375)
T 2gfp_A 322 -FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLL 360 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHH
T ss_pred -cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 889999999999999999999999988877666644443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.46 E-value=2.3e-14 Score=125.60 Aligned_cols=155 Identities=14% Similarity=0.028 Sum_probs=101.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhccc------chhhhhchHHHHHHHH
Q psy17628 140 SPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDE------KLVDGLGLLPVASLAI 213 (338)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 213 (338)
..++..+...++.++|++++|+++||+|||+.++++.++..++.++.++......... .....+....++...+
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l 135 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRII 135 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHH
Confidence 3456777888999999999999999999999999999999988887764211000000 0001223445566666
Q ss_pred HHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccceeehhhhHHHHHHH
Q psy17628 214 YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF--------GTGVAFGTFAVYCIIGT 285 (338)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 285 (338)
.+++.+....... ++++|..|++.|+...++.......+..+++.+........ +|+..+.... +..+..
T Consensus 136 ~G~g~G~~~~~~~-~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 213 (491)
T 4gc0_A 136 GGIGVGLASMLSP-MYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASEC-IPALLF 213 (491)
T ss_dssp HHHHHHHHHHHHH-HHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTH-HHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhh-hhhhhh
Confidence 6666665544444 89999999999999999988887777766665554443322 2333333333 333333
Q ss_pred HHHHhhccCCC
Q psy17628 286 FFVYFVVPETK 296 (338)
Q Consensus 286 ~~~~~~~~~~~ 296 (338)
++..++.||+.
T Consensus 214 ~~~~~~~peSp 224 (491)
T 4gc0_A 214 LMLLYTVPESP 224 (491)
T ss_dssp HHHGGGSCCCH
T ss_pred hhhhhcCCCCh
Confidence 44555688873
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.28 E-value=1.6e-12 Score=114.77 Aligned_cols=91 Identities=9% Similarity=-0.020 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhcccccccceeeeeccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--c---------ceee
Q psy17628 206 LPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG--T---------GVAF 274 (338)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~ 274 (338)
..+....+.+.+.+... +..+.++.|..|++.||+++|+.+....+++.+++.+.+.+.+..+ | ...+
T Consensus 407 ~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 485 (524)
T 2xut_A 407 WQILPYALLTFGEVLVS-ATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQM 485 (524)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHH
Confidence 33444444454444333 3334788999999999999999999999999999999988765321 1 1125
Q ss_pred hhhhHHHHHHHHHHHhhccCCCC
Q psy17628 275 GTFAVYCIIGTFFVYFVVPETKN 297 (338)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
++.+++.+++.++.+++.++.++
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~ 508 (524)
T 2xut_A 486 FFFAGFAILAAIVFALYARSYQM 508 (524)
T ss_dssp HHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 55566666665555554555443
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.22 E-value=3.3e-12 Score=109.40 Aligned_cols=155 Identities=11% Similarity=0.045 Sum_probs=93.7
Q ss_pred hHHHHHhhHHHHHh-ccCCCCCcchhhHHHHHHHHHHHHHHHHhhhhcCCchHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy17628 120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (338)
Q Consensus 120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
+.....+.|.++++ .|.+..+.+...+...++..+++++.|+++||+|||++++.+..+..+....+........
T Consensus 23 ~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~---- 98 (417)
T 2cfq_A 23 MGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPL---- 98 (417)
T ss_dssp HHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHH----
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 44556778887766 6999999999999999999999999999999999999998877665443211111000000
Q ss_pred hhhhhchHHHHHHHHHHHhhcccccccceeeeeccCCc--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeehh
Q psy17628 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP--DVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGT 276 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (338)
..........+.+...+....... ....+..++ +.|+.+.+.....+.+|..++|.+.+.+.+ .+|+..|++
T Consensus 99 ----~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~ 172 (417)
T 2cfq_A 99 ----LQYNILVGSIVGGIYLGFCFNAGA-PAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWL 172 (417)
T ss_dssp ----HHTTCCHHHHGGGSSTTHHHHTTH-HHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTT
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHH
Confidence 000001111111111111111111 222233322 345666777766777888888888887776 477777776
Q ss_pred hhHHHHHH
Q psy17628 277 FAVYCIIG 284 (338)
Q Consensus 277 ~~~~~~~~ 284 (338)
.++..++.
T Consensus 173 ~~~~~~~~ 180 (417)
T 2cfq_A 173 GSGCALIL 180 (417)
T ss_dssp TTTTTTTH
T ss_pred HHHHHHHH
Confidence 65554333
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=68.80 E-value=3.4 Score=17.92 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=11.8
Q ss_pred HHHHhhhhcCCchHH
Q psy17628 158 FSSLLVDKAGRRPLL 172 (338)
Q Consensus 158 ~~g~l~d~~grr~~~ 172 (338)
++|.+..++|||.+-
T Consensus 2 lfgklikkfgrkais 16 (26)
T 2g9p_A 2 LFGKLIKKFGRKAIS 16 (26)
T ss_dssp HHHHHHHHHTSHHHH
T ss_pred cHHHHHHHHhHHHHH
Confidence 468889999998653
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=40.07 E-value=32 Score=16.63 Aligned_cols=12 Identities=33% Similarity=0.503 Sum_probs=8.0
Q ss_pred HHhhhccCCchh
Q psy17628 35 LVFLIVAPETPV 46 (338)
Q Consensus 35 ~~~~~~~pesp~ 46 (338)
+....+.+|.||
T Consensus 17 iFFAI~FRePPr 28 (32)
T 3arc_T 17 FFFAIFFREPPR 28 (32)
T ss_dssp HHHHHHTSCCCC
T ss_pred HHHhhhhcCCCC
Confidence 344556799986
No 17
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=35.07 E-value=37 Score=27.54 Aligned_cols=21 Identities=5% Similarity=-0.123 Sum_probs=10.1
Q ss_pred ccceeehhhhHHHHHHHHHHH
Q psy17628 269 GTGVAFGTFAVYCIIGTFFVY 289 (338)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~ 289 (338)
++.|.+++.-++..+.+.+.+
T Consensus 245 ~~~WVywvgPiiGailaallY 265 (340)
T 3iyz_A 245 ENHWIYWVGPIIGAVLAGALY 265 (340)
T ss_pred CcEeehhHHHHHHHHHHHHHH
Confidence 344556555444444444443
No 18
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=34.03 E-value=43 Score=26.05 Aligned_cols=24 Identities=8% Similarity=-0.167 Sum_probs=11.4
Q ss_pred ccceeehhhhHHHHHHHHHHHhhc
Q psy17628 269 GTGVAFGTFAVYCIIGTFFVYFVV 292 (338)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~ 292 (338)
.+.|.+++.-.+..+.+.+.+.++
T Consensus 199 ~~~Wvy~vgP~~Ga~la~~~y~~l 222 (263)
T 2b6o_A 199 TNHWVYWVGPVIGAGLGSLLYDFL 222 (263)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHTT
T ss_pred cceeHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444444444434
No 19
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=26.62 E-value=78 Score=18.96 Aligned_cols=10 Identities=30% Similarity=0.318 Sum_probs=5.2
Q ss_pred HHhhccCCCC
Q psy17628 288 VYFVVPETKN 297 (338)
Q Consensus 288 ~~~~~~~~~~ 297 (338)
+-.++||..+
T Consensus 50 iG~~LPE~Sr 59 (77)
T 2dw3_A 50 VGRMLPIQEN 59 (77)
T ss_dssp HHHCTTTTCS
T ss_pred HHHhCchhcc
Confidence 3345676543
No 20
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=23.91 E-value=37 Score=26.45 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=7.5
Q ss_pred eeehhhhHHHHHHHHHHH
Q psy17628 272 VAFGTFAVYCIIGTFFVY 289 (338)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~ 289 (338)
|.+++.-.+..+.+.+.+
T Consensus 205 Wvy~vgP~~Ga~la~~~y 222 (266)
T 3d9s_A 205 WVFWVGPIVGAVLAAILY 222 (266)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 344444444444333343
No 21
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=22.58 E-value=1.7e+02 Score=23.25 Aligned_cols=21 Identities=5% Similarity=-0.123 Sum_probs=9.4
Q ss_pred ccceeehhhhHHHHHHHHHHH
Q psy17628 269 GTGVAFGTFAVYCIIGTFFVY 289 (338)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~ 289 (338)
++.|.+++.-.+..+.+.+.+
T Consensus 206 ~~~WVy~vgPiiGailaa~ly 226 (301)
T 2zz9_A 206 ENHWIYWVGPIIGAVLAGALY 226 (301)
T ss_dssp TTTTHHHHHHHHHHHHHHHHH
T ss_pred cceeeeeeHHHHHHHHHHHHH
Confidence 344455554444444443443
Done!