RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17628
(338 letters)
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 150 bits (380), Expect = 2e-41
Identities = 89/314 (28%), Positives = 144/314 (45%), Gaps = 14/314 (4%)
Query: 1 MVVSGILYTYVIGSL-----YED-YTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRR 54
+ GIL Y GS + I L+ L L + L PE+P +L+ K R
Sbjct: 171 AITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGL-LFLGLFFLPESPRWLVGKGRV 229
Query: 55 KDAEKSLLILRGPNYDIHGELDELQ-----KELDIQAQKKKSLVEIYSNKATVKATIVIV 109
++A KSL LRG + + LDEL+ + ++ ++ + S + + + V
Sbjct: 230 EEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGV 289
Query: 110 GLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169
L F F+GIN +++Y I IVG + TF + LVD+ GRR
Sbjct: 290 VLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR 349
Query: 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVM 229
PLLLI MAIC+ LG G + + + ++I F++G+GP+P V+
Sbjct: 350 PLLLIGAAGMAICLFVLGILGA--SFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVI 407
Query: 230 MGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY 289
+ E+F ++ + + L F+V F + + G G F F ++G FVY
Sbjct: 408 VSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVY 467
Query: 290 FVVPETKNKSLQQI 303
F +PETK ++L++I
Sbjct: 468 FFLPETKGRTLEEI 481
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 144 bits (366), Expect = 1e-39
Identities = 92/311 (29%), Positives = 154/311 (49%), Gaps = 16/311 (5%)
Query: 1 MVVSGILYTYVIG-----SLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRK 55
+ GIL +IG D I L +P + LL+ L+ PE+P +L+ K + +
Sbjct: 145 GITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLE 204
Query: 56 DAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLV-EIYSNKATVKATIVIVGLLCF 114
+A L LRG + D+ E+ E + L+ + +K+ E++ K + ++ V L F
Sbjct: 205 EARAVLAKLRGVS-DVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIF 263
Query: 115 LSFSGINVVIFYLKRILIATNSKIISPNYGQNI-VGFIQVIMTFFSSLLVDKAGRRPLLL 173
+GIN + +Y I + +S + I VG + + TF + LVD+ GRRPLLL
Sbjct: 264 QQLTGINAIFYYSPTIF---ETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLL 320
Query: 174 ISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL 233
+ MAIC L LL + + G+ + + ++I F++G+GP+P V++ EL
Sbjct: 321 LGAAGMAIC--FLVLGVALLGVAKSKGAGIVAI--VFILLFIAFFALGWGPVPWVIVSEL 376
Query: 234 FTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP 293
F V+ A+ + L F++ F + A G V F FA ++ FV+F VP
Sbjct: 377 FPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYV-FLVFAGLLVLFILFVFFFVP 435
Query: 294 ETKNKSLQQIQ 304
ETK ++L++I
Sbjct: 436 ETKGRTLEEID 446
Score = 28.8 bits (65), Expect = 4.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 157 FFSSLLVDKAGRRPLLLISDICMAICIG 184
F+ L D+ GR+ LLI ++ I
Sbjct: 64 LFAGKLGDRFGRKKSLLIGNVLFVIGAL 91
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 120 bits (302), Expect = 2e-30
Identities = 80/301 (26%), Positives = 141/301 (46%), Gaps = 34/301 (11%)
Query: 28 VIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQ 87
IP L L+ L PETP YL+S+ +++ AE L + G L E++ LD +
Sbjct: 201 AIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT-LATQALQEIKHSLDHGRK 259
Query: 88 KKKSLVEIYSNKATVKATIVIVGLL--CFLSFSGINVVIFYLKRIL----IATNSKIISP 141
L+ ++++G++ F F GINVV++Y I +T+ ++
Sbjct: 260 TGGKLL-------MFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQ- 311
Query: 142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201
IVG I + T + + VDK GR+PL +I + MAI + +LG FY
Sbjct: 312 ---TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY--------TQ 360
Query: 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTF 261
G++ + S+ Y+ F++ +GP+ V++ E+F ++G AL + + + V TF
Sbjct: 361 APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTF 420
Query: 262 ------DDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKK 315
+ F G ++ + ++ F++ VPETK K+L+++ E + KK
Sbjct: 421 PMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEM--EALWEPETKK 478
Query: 316 A 316
Sbjct: 479 T 479
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 48.8 bits (117), Expect = 2e-06
Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 13/189 (6%)
Query: 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIV-GFIQVIMTFFSSLLV 163
++++ L FL G ++ YL L + + G ++ LL
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235
Query: 164 DKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFG 223
D+ GRR LLL+ I + + L L L + +L + F
Sbjct: 236 DRLGRRRLLLL--IGLLLAALGLLLLALAPSL---------ALLLVALLLLGFGLGFAFP 284
Query: 224 PIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCII 283
+ + EL P+ +G A G+ GSL + + G G F A ++
Sbjct: 285 ALL-TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL 343
Query: 284 GTFFVYFVV 292
+ +
Sbjct: 344 AALLLLLLP 352
Score = 41.1 bits (97), Expect = 6e-04
Identities = 34/196 (17%), Positives = 71/196 (36%), Gaps = 28/196 (14%)
Query: 104 ATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLV 163
+ + L L ++ + L L + S+ + + + + L
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA---GLIVSAFSLGYALGSLLAGYLS 58
Query: 164 DKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFG 223
D+ GRR +LL+ + A +G+L F + L + + +G G
Sbjct: 59 DRFGRRRVLLLGLLLFA--LGSLLLAF--------------ASSLWLLLVGRFLLGLGGG 102
Query: 224 ---PIPGVMMGELFTPDVKGLALGVICI---LGSLIEFVVVKTFDDVERAFGTGVAFGTF 277
P ++ E F P +G ALG+ LG+L+ ++ + + G F
Sbjct: 103 ALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE---SLGWRWLFLIL 159
Query: 278 AVYCIIGTFFVYFVVP 293
A+ ++ + F++
Sbjct: 160 AILGLLLALLLLFLLR 175
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 43.1 bits (102), Expect = 1e-04
Identities = 61/272 (22%), Positives = 102/272 (37%), Gaps = 46/272 (16%)
Query: 42 PETPVYLLSKKRRKDAEKSLL-ILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKA 100
PE+P +L+S+ R ++A K L I + + E+ L E D+ + KK+ YS
Sbjct: 264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQ-----YSFLD 318
Query: 101 TV-KATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMT--- 156
+ L + + + L L N G NI I
Sbjct: 319 LFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDL---------GNLGGNIY-LDLFISGLVE 368
Query: 157 ----FFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA 212
+ LL+D+ GRR + S + + + L ++ L L +L +
Sbjct: 369 LPAKLITLLLIDRLGRRYTMAASLLLAGVALLLL---LFVPVDLYFLRTALAVLGKFGIT 425
Query: 213 I-YIIVFSVGFGPIPGVMMGELFTPDVKGLALGV---ICILGSLIEFVVVKTFDDVERAF 268
+ +V+ + EL+ V+ L +GV + +GS+I +V + F
Sbjct: 426 SAFQMVY---------LYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYL-GEKWL-F 474
Query: 269 GTGVAFGTFAVYCIIGTFFVYFVVPETKNKSL 300
V FG A+ I T F +PETK L
Sbjct: 475 LPLVLFGGLALLAGILTLF----LPETKGVPL 502
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 41.9 bits (99), Expect = 3e-04
Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 27/155 (17%)
Query: 89 KKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN--VVIFYLKRILIATNSKIISPNYGQN 146
K S + I+ N+ + ++++ L I ++++Y+ +L +
Sbjct: 226 KDSFLLIFKNRPLL---LLLLMNLLLFIAFNIRGSIMVYYVTYVL---GDPELFAYLLLL 279
Query: 147 IVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLL 206
G +I LV K G++ L LI + + +G L YF
Sbjct: 280 ASGAGLLIGLILWPRLVKKFGKKKLFLIG--LLLLAVGYLLLYF------------TPAG 325
Query: 207 PVASLAIYIIVFSVGFG---PIPGVMMGELFTPDV 238
V + + +I+ VG G P+P M+ T D
Sbjct: 326 SVVLIVVALIIAGVGTGIANPLPWAMVA--DTVDY 358
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 39.3 bits (92), Expect = 0.002
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 26/162 (16%)
Query: 158 FSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIV 217
+ LVD GR+P+ L+ + + LG+ + L LAIY++
Sbjct: 354 VTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS------------THGFLAIYVLA 401
Query: 218 -FSVGFGP--IPGVMMGELFTPDVKGLALGVICILGSL------IEFVVVKTFDDVERAF 268
F FGP ++ GE+F + A G+ G F+ + D + +
Sbjct: 402 QFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGY 461
Query: 269 GTGVAFG----TFAVYCIIGTFFVYFVVPETKNKSLQQIQDE 306
TG+ G FA++ +G F ++PETK KSL+++ E
Sbjct: 462 PTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSGE 502
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 36.9 bits (86), Expect = 0.013
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 9/107 (8%)
Query: 147 IVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLL 206
+ + I S L D+ GRRP+L I L + L L G L
Sbjct: 263 LSLILFFITIPLSGALSDRIGRRPVL--------IIFTVLAALLAVPLLMALLDSGSFTL 314
Query: 207 PVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLI 253
+ ++ + GP+ G + ELF +V+ + L I
Sbjct: 315 FFFLVLGMALIGGMYTGPM-GSFLPELFPTEVRYTGASLAYNLAGAI 360
>gnl|CDD|217785 pfam03901, Glyco_transf_22, Alg9-like mannosyltransferase family.
Members of this family are mannosyltransferase enzymes.
At least some members are localised in endoplasmic
reticulum and involved in GPI anchor biosynthesis.
Length = 412
Score = 34.6 bits (80), Expect = 0.057
Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 17/157 (10%)
Query: 114 FLSFSGINVVIFYLKRILIATNS--------KIISPNYGQNIVGFIQVIMTFFSSLLVDK 165
F ++FY R+L+ S + + YG+ I ++++ S +
Sbjct: 70 ARLFLDSKYLVFYAPRLLLGLFSALADYYLYRAVCRLYGKEI-ARWALLLSLSSWGMFYA 128
Query: 166 AGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG---LGLLPVASLAIYIIVFSVGF 222
+ R L + M + AL Y + V +L +A+LAI S
Sbjct: 129 STR---TLPNSFEMILTSIALYYLLEYGSVPNTSVSYKYLKAVLLIAALAILGRPTSALL 185
Query: 223 GPIPGV-MMGELFTPDVKGLALGVICILGSLIEFVVV 258
+ + L +K I + G L+ +V+
Sbjct: 186 WLPLVLYHLLRLPGKRLKLFLFLAISL-GLLVLLLVL 221
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 34.3 bits (79), Expect = 0.076
Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 12/166 (7%)
Query: 87 QKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQN 146
+ LV + +++ LL F + L + ++ ++ + G
Sbjct: 187 EAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLG-- 244
Query: 147 IVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLL 206
+ G + I L D+ GRR LL++ + + + L L
Sbjct: 245 LAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTE---------SSLW 295
Query: 207 PVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSL 252
+ +L + + F + ++ +L + +G A G+ GSL
Sbjct: 296 LLVALLLLGFGAGLVFPALNALVS-DLAPKEERGTASGLYNTAGSL 340
Score = 33.6 bits (77), Expect = 0.15
Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 29/198 (14%)
Query: 106 IVIVGLLCFLSFSGINVVI-FYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD 164
+ + L L S + + YL L + ++I + + L D
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEI---GLLLTAFSLGYALAQPLAGRLSD 57
Query: 165 KAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFG- 223
+ GRR +LLI + A+ + L L + L + ++ +G G
Sbjct: 58 RFGRRRVLLIGLLLFALGLLLL----------------LFASSLWLLLVLRVLQGLGGGA 101
Query: 224 --PIPGVMMGELFTPDVKGLALGVICI---LGSLIEFVVVKTFDDVERAFGTGVAFGTFA 278
P ++ + F P+ +G ALG++ LG+ + ++ FG AF A
Sbjct: 102 LFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLAS---LFGWRAAFLILA 158
Query: 279 VYCIIGTFFVYFVVPETK 296
+ ++ ++P
Sbjct: 159 ILALLAAVLAALLLPRPP 176
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional.
Length = 459
Score = 33.5 bits (77), Expect = 0.15
Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 13/57 (22%)
Query: 95 IYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYG-QNIVGF 150
+Y N VKA IV G LC G+NVVI L LI NYG + I G
Sbjct: 81 LYFNPKEVKAGIVTCGGLC----PGLNVVIRELVMNLIN--------NYGVKTIYGA 125
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 33.5 bits (77), Expect = 0.16
Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 5/148 (3%)
Query: 28 VIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQ 87
+ P+L LL+ + PE+ +L+SK+ I + L E +
Sbjct: 179 IAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKAT----QG 234
Query: 88 KKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNI 147
K+S+ + T + T+++ L L G+ + +L ++++ + G +
Sbjct: 235 TKRSVFKALFQGKTARITVLLWLLYFMLLV-GVYFLTNWLPKLMVELGFSLSLAATGGAL 293
Query: 148 VGFIQVIMTFFSSLLVDKAGRRPLLLIS 175
F VI + L D+ G R L+
Sbjct: 294 FNFGGVIGSIIFGWLADRLGPRVTALLL 321
>gnl|CDD|234827 PRK00733, hppA, membrane-bound proton-translocating
pyrophosphatase; Validated.
Length = 666
Score = 32.8 bits (76), Expect = 0.25
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 216 IVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFD--DVERAFGTGVA 273
+V + G LF L + + I+ S+I V+ + +A G+
Sbjct: 220 MVLGAAAADAAFGVAGVLFP-----LLIAAVGIIASIIGIFFVRLGKGGNPMKALNRGL- 273
Query: 274 FGTFAVYCIIGTFFVYFVV 292
T AV I+ T+F + +
Sbjct: 274 IVT-AVLSIVLTYFATYWL 291
>gnl|CDD|193185 pfam12709, Kinetocho_Slk19, Central kinetochore-associated. This
is a family of proteins integrally involved in the
central kinetochore. Slk19 is a yeast member and it may
play an important role in the timing of nuclear
migration. It may also participate, directly or
indirectly, in the maintenance of centromeric tensile
strength during mitotic stagnation, for instance during
activation of checkpoint controls, when cells need to
preserve nuclear integrity until cell cycle progression
can be resumed.
Length = 87
Score = 30.4 bits (69), Expect = 0.27
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 43 ETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVE 94
E V +L K +K L L N + E+++L+K+LD + ++K+ L++
Sbjct: 33 EQKVKMLKKGYEAKYQKKLDELELENKALKQEIEQLKKQLDTERKEKQELLK 84
>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport
and metabolism].
Length = 498
Score = 31.5 bits (72), Expect = 0.67
Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 12/118 (10%)
Query: 179 MAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD- 237
I +GA+ L L V G G L + IIV + F P ++GEL+ D
Sbjct: 93 RTIVLGAILMAIGHLVLAISSVSGPGGLYIGL--ALIIVGTGLFKPNISSLLGELYPKDD 150
Query: 238 ---VKGLALGVICI-LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFV 291
G L + I +GSLI ++ +G V FG AV IIG V F+
Sbjct: 151 PRRDGGFTLFYMGINIGSLIAPIITGLLAIN---YGWHVGFGLAAVGMIIG--LVIFL 203
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 31.3 bits (71), Expect = 0.80
Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 32/182 (17%)
Query: 74 ELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGL-----LCFLSFSGINVVIFYLK 128
+LDE ++ ++ SL ++ N+ +A I+++G LCF +F+ Y++
Sbjct: 217 QLDETSQQETRALKEAGSLKGLWRNR---RAFIMVLGFTAAGSLCFYTFTT------YMQ 267
Query: 129 RILIATNSKIISPNYGQNIVG---FIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGA 185
+ L+ N+ + N I+ F+ +++ L DK GRR +L C G+
Sbjct: 268 KYLV--NTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSML--------CFGS 317
Query: 186 LGYYFY--LLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLAL 243
L F +L + + + A+ I+ F + I G++ E+F V+ L +
Sbjct: 318 LAALFTVPILSALQNVSSPYAAFGLVMCALLIVSF---YTSISGILKAEMFPAQVRALGV 374
Query: 244 GV 245
G+
Sbjct: 375 GL 376
>gnl|CDD|163667 cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain.
PrpA and PrpB are bacterial type I serine/threonine
and tyrosine phosphatases thought to modulate the
expression of proteins that protect the cell upon
accumulation of misfolded proteins in the periplasm.
The PPP (phosphoprotein phosphatase) family, to which
PrpA and PrpB belong, is one of two known protein
phosphatase families specific for serine and threonine.
This family also includes: PP1, PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
and ApA4 hydrolase. The PPP catalytic domain is defined
by three conserved motifs (-GDXHG-, -GDXVDRG- and
-GNHE-). The PPP enzyme family is ancient with members
found in all eukaryotes, and in most bacterial and
archeal genomes. Dephosphorylation of phosphoserines
and phosphothreonines on target proteins plays a
central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and
acid sphingomyelinases (ASMases). The conserved domain
is a double beta-sheet sandwich with a di-metal active
site made up of residues located at the C-terminal side
of the sheets. This domain is thought to allow for
productive metal coordination.
Length = 207
Score = 30.3 bits (69), Expect = 0.98
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 70 DIHGELDELQKELD 83
DIHG LQK LD
Sbjct: 8 DIHGHYSLLQKALD 21
>gnl|CDD|217327 pfam03030, H_PPase, Inorganic H+ pyrophosphatase. The H+
pyrophosphatase is an transmembrane proton pump involved
in establishing the H+ electrochemical potential
difference between the vacuole lumen and the cell
cytosol. Vacuolar-type H(+)-translocating inorganic
pyrophosphatases have long been considered to be
restricted to plants and to a few species of
photo-trophic bacteria. However, in recent
investigations, these pyrophosphatases have been found
in organisms as disparate as thermophilic Archaea and
parasitic protists.
Length = 669
Score = 30.5 bits (70), Expect = 1.3
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 216 IVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFD--DVERAFGTGVA 273
+V GV G LF P L + + I+ S+I V+T + +A G+
Sbjct: 234 MVLGAALFGADGVQAGVLF-P----LLVAAVGIIASIIGTFFVRTGKGANPMKALNRGL- 287
Query: 274 FGTFAVYCIIGTFFVYFVV 292
+ A+ I+ T+F + +
Sbjct: 288 IVS-AILSIVATYFATYWL 305
>gnl|CDD|225058 COG2147, RPL19A, Ribosomal protein L19E [Translation, ribosomal
structure and biogenesis].
Length = 150
Score = 29.2 bits (66), Expect = 1.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 311 KKKKKARRTGSASRKSTK 328
+KKK RR G SRK TK
Sbjct: 68 AQKKKGRRRGPGSRKGTK 85
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 30.0 bits (68), Expect = 2.1
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 51 KKRRKDAEKSLLILRGPN----YDIHGELDELQKELDIQAQKKKSLVEI 95
K+RRK+ E+ L R N DI EL+ K L+ QA+K + E+
Sbjct: 171 KERRKETERKLERTRE-NLDRLEDILNELERQLKSLERQAEKAERYKEL 218
>gnl|CDD|238268 cd00481, Ribosomal_L19e, Ribosomal protein L19e. L19e is found in
the large ribosomal subunit of eukaryotes and archaea.
L19e is distinct from the ribosomal subunit L19, which
is found in prokaryotes. It consists of two small
globular domains connected by an extended segment. It is
located toward the surface of the large subunit, with
one exposed end involved in forming the intersubunit
bridge with the small subunit. The other exposed end is
involved in forming the translocon binding site, along
with L22, L23, L24, L29, and L31e subunits.
Length = 145
Score = 28.3 bits (64), Expect = 2.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 311 KKKKKARRTGSASRKSTK 328
+ ++K R G SRK TK
Sbjct: 65 EARRKGRHRGPGSRKGTK 82
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 304
Score = 29.1 bits (66), Expect = 3.3
Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 18/127 (14%)
Query: 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD 164
T+ + + + +G +++ +KR++ + G ++ + + V
Sbjct: 82 TLASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVG 141
Query: 165 KAGRRPLLLI------SDICMAIC--IGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII 216
K L+ SD+ ++ +G LG LD P+A+L I +
Sbjct: 142 KKTNSQALIADALHHRSDVLTSLAVLVGLLGSLLGWPWLD----------PLAALLISLY 191
Query: 217 VFSVGFG 223
+ GF
Sbjct: 192 ILKTGFR 198
>gnl|CDD|201707 pfam01280, Ribosomal_L19e, Ribosomal protein L19e.
Length = 148
Score = 28.3 bits (64), Expect = 3.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 311 KKKKKARRTGSASRKSTK 328
+K++K R G SRK TK
Sbjct: 67 EKRRKGRHRGPGSRKGTK 84
>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter.
This model describes a broadly distributed family of
transporters, a number of which have been shown to
transport divalent cations of cobalt, cadmium and/or
zinc. The family has six predicted transmembrane
domains. Members of the family are variable in length
because of variably sized inserts, often containing
low-complexity sequence [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 268
Score = 28.7 bits (65), Expect = 3.6
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 24/121 (19%)
Query: 114 FLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR--PL 171
FL + ++ ++R++ I IV + +I+ +L + + G R L
Sbjct: 68 FLVVVALFILYEAIERLI--NPEPEIDGGTML-IVAIVGLIVNLILALYLHRVGHRLGSL 124
Query: 172 LLISD---------ICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGF 222
L + + + IGAL YF D P+A+L I +++ F
Sbjct: 125 ALRAAALHVLSDALSSVGVLIGALLIYFGWHWAD----------PIAALLISLLILYTAF 174
Query: 223 G 223
Sbjct: 175 R 175
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 28.0 bits (63), Expect = 3.9
Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 41/161 (25%)
Query: 149 GFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI--CIGALGYYFYLLKLDEKLVDGLGLL 206
Q+I + S LL D+ GR+P+LL+ + + AL +L
Sbjct: 8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVL------------- 54
Query: 207 PVASLAIYIIVFSVGFG-----PIPGVMMGELFTPDVKGLALGVI-------CILGSLIE 254
I F GFG ++ +++ P+ +G+ALG++ +LG +
Sbjct: 55 -------IIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLG 107
Query: 255 FVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET 295
V+ + G F A+ + + F++PET
Sbjct: 108 GVLAQ-------FLGWRAPFLFLAILALAAFILLAFLLPET 141
>gnl|CDD|238706 cd01418, Ribosomal_L19e_A, Ribosomal protein L19e, archaeal. L19e
is found in the large ribosomal subunit of eukaryotes
and archaea. L19e is distinct from the ribosomal subunit
L19, which is found in prokaryotes. It consists of two
small globular domains connected by an extended segment.
It is located toward the surface of the large subunit,
with one exposed end involved in forming the
intersubunit bridge with the small subunit. The other
exposed end is involved in forming the translocon
binding site, along with L22, L23, L24, L29, and L31e
subunits.
Length = 145
Score = 28.1 bits (63), Expect = 4.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 311 KKKKKARRTGSASRKSTK 328
+K+KK RR G SRK K
Sbjct: 65 EKRKKGRRRGPGSRKGKK 82
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 28.8 bits (64), Expect = 4.6
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 21/134 (15%)
Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFI----QVIMTFFSSLLVDKAGRRPLLLISDI 177
V +F + +L + + P+ G+ ++G I ++ FF L DK GR+
Sbjct: 181 VEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQ------- 233
Query: 178 CMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVM--MGELFT 235
C+ IC+ G++ + V G G L + F +G G IP V E
Sbjct: 234 CLLICLSVNGFFAFF----SSFVQGYGFFLFCRL---LSGFGIG-GAIPIVFSYFAEFLA 285
Query: 236 PDVKGLALGVICIL 249
+ +G L +C+
Sbjct: 286 QEKRGEHLSWLCMF 299
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 28.9 bits (65), Expect = 4.9
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 51 KKRRKDAEKSLLILRGPNYDIHGELDELQKELDI-QAQKKKSLVEIYSNKATVK 103
E+ L L+ + EL +LQ+EL +AQ + S + +A +
Sbjct: 461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE 514
>gnl|CDD|236292 PRK08566, PRK08566, DNA-directed RNA polymerase subunit A';
Validated.
Length = 882
Score = 28.7 bits (65), Expect = 5.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 129 RILIATNSKIISPNYGQNIVGFIQ 152
RIL+ I+SP YG I+G IQ
Sbjct: 478 RILMLVQEHILSPRYGGPIIGGIQ 501
>gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and
metabolism].
Length = 395
Score = 28.4 bits (64), Expect = 5.7
Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 29/143 (20%)
Query: 85 QAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNY- 143
A K S+ +++ + + T + +GL L + VI +L ILI + +S
Sbjct: 194 IATKLVSVRKVWRSPLAWQVT-LFMGLQSLLYYI----VIGWLPAILI---DRGLSAAEA 245
Query: 144 --GQNIVGFIQVIMTFFSSLLVDKAG-RRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200
+++ Q+ LL ++ +RPL++++ + M + G +G
Sbjct: 246 GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV--GLVG------------- 290
Query: 201 DGLGLLPVASLAIYIIVFSVGFG 223
L L P ++ ++ +G G
Sbjct: 291 --LLLAPGQLPILWALLLGLGQG 311
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 28.5 bits (64), Expect = 5.9
Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 26/155 (16%)
Query: 147 IVGFIQVIMTFFSSLLVDKAG-----RRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201
IVGFI +I+ S L+ + G R +I+ + +++ + A Y
Sbjct: 262 IVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVN----------- 310
Query: 202 GLGLLPVASLAI-YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFV---V 257
+P A+LA+ + F +G G I ++ + ++ GL G+I LG+L V V
Sbjct: 311 ----IPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIV 366
Query: 258 VKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVV 292
+ +F + A +IG +V
Sbjct: 367 IGAIAATTGSFAGALMVV--AALALIGALSYLLLV 399
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase.
Length = 411
Score = 27.9 bits (62), Expect = 8.1
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 94 EIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYG-QNIVG 149
+IY VKA IV G LC G+N VI ++I+ YG +NIVG
Sbjct: 46 KIYFEPEEVKAAIVTCGGLC----PGLNDVI---RQIVFTLEI------YGVKNIVG 89
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 28.2 bits (63), Expect = 9.3
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 266 RAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGSASRK 325
R FG + F + FFVY ++ E NK +Q + L + K + +
Sbjct: 670 RNFGIIIGF-------TVFFFFVYILLTEF-NKGAKQKGEILVFRRGSLKRAKKAGETSA 721
Query: 326 STKSNTSAGS 335
S K++ AG
Sbjct: 722 SNKNDIEAGE 731
>gnl|CDD|233349 TIGR01301, GPH_sucrose, GPH family sucrose/H+ symporter. This
model represents sucrose/proton symporters, found in
plants, from the Glycoside-Pentoside-Hexuronide
(GPH)/cation symporter family. These proteins are
predicted to have 12 transmembrane domains. Members may
export sucrose (e.g. SUT1, SUT4) from green parts to the
phloem for long-distance transport or import sucrose
(e.g SUT2) to sucrose sinks such as the tap root of the
carrot.
Length = 477
Score = 27.8 bits (62), Expect = 9.8
Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 27/109 (24%)
Query: 159 SSLLVDKAGR-----RPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLP------ 207
+S+ ++K R + L I +I +AIC+ A Y+ K LP
Sbjct: 321 TSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIK 380
Query: 208 VASLAIYIIV-------FSVGFGPIPGVMMGELFTPDV---KGLALGVI 246
++L ++ I+ +S+ F + + + ++ +GL++GV+
Sbjct: 381 ASALIVFAILGIPLAITYSIPFA------LASIRSSNLGAGQGLSMGVL 423
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.143 0.409
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,702,213
Number of extensions: 1826301
Number of successful extensions: 3173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3109
Number of HSP's successfully gapped: 186
Length of query: 338
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 240
Effective length of database: 6,590,910
Effective search space: 1581818400
Effective search space used: 1581818400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.4 bits)