RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17628
(338 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 2e-05
Identities = 31/222 (13%), Positives = 75/222 (33%), Gaps = 62/222 (27%)
Query: 7 LYTYVIGSLYEDYTIICLSCLVIP--VLNLL--------VFLIVAPETPVYLLSKKRRKD 56
L +++ ++ S IP +L+L+ V ++V + Y L +K+ K+
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVN-KLHKYSLVEKQPKE 423
Query: 57 AEKSL----LILRGPN---YDIHGEL-------------DELQKELD------I------ 84
+ S+ L L+ Y +H + D + LD I
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 85 --QAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVI---FYLKRIL--IATNSK 137
++ ++ + ++ I S S +N + FY I +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 138 IIS------PNYGQNIV-----GFIQVIMTFFSSLLVDKAGR 168
+++ P +N++ +++ + + ++A +
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Score = 40.2 bits (93), Expect = 0.001
Identities = 55/389 (14%), Positives = 114/389 (29%), Gaps = 117/389 (30%)
Query: 6 ILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILR 65
++ +V L +Y + ++ + P + ++R + + +
Sbjct: 78 MVQKFVEEVLRINYKFL---------MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-- 126
Query: 66 GPNYDI--HGELDELQKELDIQAQKKKSLVEIY----SNKATVKATIVI--VGLLCFLSF 117
Y++ +L++ L ++ + K+++ I S K T A V + C + F
Sbjct: 127 -AKYNVSRLQPYLKLRQAL-LELRPAKNVL-IDGVLGSGK-TWVALDVCLSYKVQCKMDF 182
Query: 118 SGINVVIFYLK--------RILIATNS--KIISPNYGQ------NIVGFIQVIMTFFSSL 161
IF+L +L I PN+ NI I I L
Sbjct: 183 K-----IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 162 LVDKAGRRPLLLISDICMAICIGALGYYFYLLKL--DEKLVDGL---------------G 204
L K LL++ ++ A A +L +++ D L
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 205 LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG-SLIEFV------- 256
L P ++ + +P +V + I+ S+ + +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLP---------REVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 257 ---------VVKTF------DDVERAFGTGVAFGTF--------AVYCII----GTFFVY 289
++++ + + F F + +I V
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMF---DRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 290 FVVPETKNKSLQQIQDELSGVKKKKKARR 318
VV + SL V+K+ K
Sbjct: 406 VVVNKLHKYSL---------VEKQPKEST 425
Score = 29.8 bits (66), Expect = 1.4
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 20/86 (23%)
Query: 68 NYDI-HGELDELQKELDIQ--------AQKKKSLVEIYSNKATVKATIVIVGLLCFLSFS 118
DI D D + K+ + I +K V T+ + L
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL---SK 74
Query: 119 GINVVIFYLKRILIATNSKIISPNYG 144
+V +++ +L NY
Sbjct: 75 QEEMVQKFVEEVL--------RINYK 92
Score = 29.8 bits (66), Expect = 1.5
Identities = 37/226 (16%), Positives = 64/226 (28%), Gaps = 69/226 (30%)
Query: 2 VVSGILYTYVI-----GSLYEDYTI-ICLSCLVIPVLNL----------LVFLIVA---- 41
+S T++ +L D + L L +L + +I
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 42 -PETPVYLL---SKKRRKDAEKSLLILRGPNY------------DIH----------GEL 75
T K E SL +L Y H ++
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 76 DELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT- 134
+ + + K SLVE ++TI I + L N + L R ++
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPK----ESTISIPSIYLELKVKLEN--EYALHRSIVDHY 453
Query: 135 -------NSKIISP---NYGQNIVGF----IQVI--MTFFSSLLVD 164
+ +I P Y + +G I+ MT F + +D
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 2e-05
Identities = 55/265 (20%), Positives = 95/265 (35%), Gaps = 65/265 (24%)
Query: 27 LVIPVLNLLVFLIVA---PETPVYLLSKKRRKDAEK-------SLLILRGPNYD-IHGEL 75
V + +L F I P L +D+ + +L + + + +
Sbjct: 295 SVRKAITVL-FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 76 DELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGL---LCFLSFSGINVVIFYLKRILI 132
++ L Q + SLV N A +V+ G L G+N+ L++
Sbjct: 354 NKTNSHLPAGKQVEISLV----NGAK---NLVVSGPPQSLY-----GLNL---TLRKAKA 398
Query: 133 ATN---SKIISPNYGQNIVG---FIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGA- 185
+ S+I P + + F+ V F S LLV + L+ + + A
Sbjct: 399 PSGLDQSRI--PFSERKLKFSNRFLPVASPFHSHLLVPAS---DLINKDLVKNNVSFNAK 453
Query: 186 -LG---YYFY----LLKLD----EKLVDGLGLLPV------ASLAIYIIVFSVGFGPIPG 227
+ Y + L L E++VD + LPV A +I+ F G G G
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF--GPGGASG 511
Query: 228 VMMGELFTPDVKGLALGVICILGSL 252
+ G L + G + VI + G+L
Sbjct: 512 L--GVLTHRNKDGTGVRVI-VAGTL 533
Score = 42.3 bits (99), Expect = 2e-04
Identities = 51/308 (16%), Positives = 87/308 (28%), Gaps = 112/308 (36%)
Query: 42 PETPVYLLSK--------------KRRKDAEKSLL------ILRGPNYDIHGELDELQKE 81
P TP L+ K + L L G N DIH +L +E
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG-N-DIHALAAKLLQE 111
Query: 82 LDIQAQKKKSLVEIY------SNKATVK--------------ATIVIVGLLCFLSFSG-- 119
D K K L++ Y + + K A + F G
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL-------VAIFGGQG 164
Query: 120 -INVVIFYLK--RILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISD 176
+ Y + R L T Y + I+ S L+ +
Sbjct: 165 NTDD---YFEELRDLYQT--------YHVLVGDLIKFSAETLSELIRTTLDAEKV----- 208
Query: 177 ICMAICIGALGYYFYLLK-LDEKL----VDGLGLLPVA-------SLAIYIIVFSV-GFG 223
+L+ L+ D L +P++ LA Y++ + GF
Sbjct: 209 ---------FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 224 PIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDD--------VERAFGTGV--- 272
P GEL +KG ++ ++ +++ + F GV
Sbjct: 260 P------GELR-SYLKGATGHSQGLVTAVA-IAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 273 -AFGTFAV 279
A+ ++
Sbjct: 312 EAYPNTSL 319
Score = 37.3 bits (86), Expect = 0.007
Identities = 45/291 (15%), Positives = 75/291 (25%), Gaps = 75/291 (25%)
Query: 58 EKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLC-FLS 116
E LL+ P +LQ++ K L E A L+ FL
Sbjct: 17 EHVLLV---PT-ASFFIASQLQEQF------NKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 117 F-------SGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169
+ S + L L + + G +I + LL +
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLE---GNDI-------HALAAKLLQEN--DT 114
Query: 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLG--LLPVAS---LAIYIIVFSVGFGP 224
L+ ++ Y + L + I F G G
Sbjct: 115 TLVKTKELIKN-------YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-FG-GQGN 165
Query: 225 IPGVMMGEL------FTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTF- 277
EL + V L L L ++T D E+ F G+ +
Sbjct: 166 TDDYF-EELRDLYQTYHVLVGDLIKFSAETLSEL-----IRTTLDAEKVFTQGLNILEWL 219
Query: 278 ---------------AVYC-IIG-TFFV-YFVVPETKNKSLQQIQDELSGV 310
+ C +IG Y V + + +++ L G
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Score = 32.3 bits (73), Expect = 0.30
Identities = 39/234 (16%), Positives = 69/234 (29%), Gaps = 70/234 (29%)
Query: 142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI-----GALGYYFYLLKLD 196
YG +I+ + + + G+R I + A+ G L +++
Sbjct: 1656 TYGFSILDIVINNPVNLTIHFGGEKGKR----IRENYSAMIFETIVDGKLKTEKIFKEIN 1711
Query: 197 EKLVDGL-----GLL-------P---VASLAIYIIVFSVGFGPIPGVMM----GELFTPD 237
E GLL P + A + + S G P GE +
Sbjct: 1712 EHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE-YA-- 1768
Query: 238 VKGLAL----GVICI-----L----GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIG 284
AL V+ I + G ++ V + D++ R+ +A V
Sbjct: 1769 ----ALASLADVMSIESLVEVVFYRGMTMQVAVPR--DELGRSNYGMIAINPGRVAASFS 1822
Query: 285 TFFVYFVV----PETK--------NKSLQQI--------QDELSGVKKKKKARR 318
+ +VV T N QQ D ++ V K ++
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK 1876
Score = 31.6 bits (71), Expect = 0.41
Identities = 69/433 (15%), Positives = 121/433 (27%), Gaps = 153/433 (35%)
Query: 5 GILYTYV--IGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLL 62
G Y + LY+ Y ++ + L+ L LI DAEK +
Sbjct: 164 GNTDDYFEELRDLYQTYHVL-VGDLIKFSAETLSELIRTTL------------DAEK--V 208
Query: 63 ILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLL---CFL---- 115
+G +I L+ D Y + + ++G++ ++
Sbjct: 209 FTQG--LNILEWLENPSNTPDKD----------YLLSIPI--SCPLIGVIQLAHYVVTAK 254
Query: 116 -----------SFSGINVVIFYLKRILIATNSKIIS-----PNYGQNIVGFIQVIMTFF- 158
G + ++ A I+ ++ ++ I V+ FF
Sbjct: 255 LLGFTPGELRSYLKGATGHS---QGLVTAV---AIAETDSWESFFVSVRKAITVL--FFI 306
Query: 159 --------------SSLLVD--KAGR---RPLLLISDICMAICIGALGYYFYLLKLDEK- 198
S+L D + P+L IS++ + L ++
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 199 ---LVDGL------GLLPVASL---AIYI--------------------IVFSVGFGPI- 225
LV+G G P SL + + + FS F P+
Sbjct: 367 EISLVNGAKNLVVSG--PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 226 -PGVMMGELF--------TPDVKG-LALGVICILGSLIEFVVVKTFD--DVERAFGTGVA 273
P F + + L + I+ V TFD D+ R ++
Sbjct: 425 SP-------FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-RVLSGSIS 476
Query: 274 FGTFAVYCIIGTFFVYFVVPETKNKSLQQIQD----ELSGVKK--KKKARRTG----SAS 323
V CII V + T I D SG+ + TG A
Sbjct: 477 --ERIVDCII-RLPVKW--ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG 531
Query: 324 RKSTKSNTSAGSR 336
+ G +
Sbjct: 532 TLDINPDDDYGFK 544
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 31.9 bits (73), Expect = 0.31
Identities = 29/163 (17%), Positives = 48/163 (29%), Gaps = 22/163 (13%)
Query: 153 VIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA 212
+ T + DK R M + A Y+ + P +
Sbjct: 302 IPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW--------------MNPAGNPT 347
Query: 213 IYIIVFSV----GFGPIP--GVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFD-DVE 265
+ +I V +GP+ G+ EL G A G + G L V
Sbjct: 348 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 407
Query: 266 RAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELS 308
FG F I+ + V+ + + +Q+ EL
Sbjct: 408 DFFGWDGGFMVMIGGSILAVILLIVVMIG-EKRRHEQLLQELV 449
Score = 30.0 bits (68), Expect = 1.0
Identities = 29/197 (14%), Positives = 59/197 (29%), Gaps = 42/197 (21%)
Query: 120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQ-------VIMTFFSSLLVDKAGRRPL 171
+YL R A ++ + + +GF F + D++ R
Sbjct: 35 FGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF 94
Query: 172 LLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIV-FSVGFG-----PI 225
L I A + + G +S+A+ ++ F G+ P
Sbjct: 95 LPAGLILAAAVMLFM---------------GFVPWATSSIAVMFVLLFLCGWFQGMGWPP 139
Query: 226 PGVMMGELFTPDVKGLALGVIC-------ILGSLIEFVVVKTFDDVERAFGTGVAFGTFA 278
G M ++ +G + V + L+ + + F A A
Sbjct: 140 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF------NDWHAALYMPA 193
Query: 279 VYCIIGTFFVYFVVPET 295
I+ F + ++ +T
Sbjct: 194 FCAILVALFAFAMMRDT 210
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 31.1 bits (70), Expect = 0.57
Identities = 26/254 (10%), Positives = 67/254 (26%), Gaps = 49/254 (19%)
Query: 61 LLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGI 120
+L+ + A K +E++ ++ ++G+ C
Sbjct: 182 VLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQ 241
Query: 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFI-------QVIMTFFSSLLVDKAGRRPLLL 173
F+ S + G + G++ + FF+ L++++ G + LL
Sbjct: 242 QFANFF--------TSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALL 293
Query: 174 ISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFG---PIPGVMM 230
++ M++ I + + I + +
Sbjct: 294 LAGTIMSVRIIGSSF----------------ATSALEVVILKTLHMFEVPFLLVGCFKYI 337
Query: 231 GELFTPDVKG--------LALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCI 282
F + I S++ + + + G A+ + +
Sbjct: 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE-------SIGFQGAYLVLGLVAL 390
Query: 283 IGTFFVYFVVPETK 296
T F +
Sbjct: 391 GFTLISVFTLSGPG 404
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 1.7
Identities = 5/19 (26%), Positives = 11/19 (57%), Gaps = 4/19 (21%)
Query: 15 LYEDYT---IICLSC-LVI 29
+ E ++ ++C C LV+
Sbjct: 34 IVERFSEGDVVCALCGLVL 52
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle,
hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Length = 342
Score = 29.0 bits (64), Expect = 2.4
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 70 DIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVG 110
D+HG+ D L L KK+ +++ N A + +V+ G
Sbjct: 78 DVHGQYDVLLTLL-----KKQKIIDSDGNWAFGEGHMVMTG 113
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 28.8 bits (64), Expect = 3.3
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Query: 253 IEFVVVKTFDDVERAFGTGVAFGTFAVYCIIG--TFFVYFVVPETKNKSLQQIQDELSGV 310
++ + V +D + F ++ + + PE K + L+ E V
Sbjct: 383 MDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQV 442
Query: 311 KKKKKARRTGS-ASRKSTKSNTS 332
+ ++ + + RK N S
Sbjct: 443 QLDQETGFSITELQRKQAMLNAS 465
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine
tetraphosphatase, monomer, PSI- 2, protein structure
initiative, nysgrc; 2.05A {Trypanosoma brucei}
Length = 262
Score = 27.7 bits (62), Expect = 5.0
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 60 SLLILRGPNY---DIHGELDELQKELD 83
+L + G DIHG +L+ L
Sbjct: 13 TLPNVTGRVIIVGDIHGCRAQLEDLLR 39
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda,
Ser/Thr protein phosphatase, ppase, manganese, sulfate,
viral protein; 2.15A {Enterobacteria phage lambda}
SCOP: d.159.1.3
Length = 221
Score = 27.5 bits (61), Expect = 5.0
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 70 DIHGELDELQKELD 83
D+HG L +LD
Sbjct: 20 DLHGCYTNLMNKLD 33
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase,
membrane pyrophosphotase, ION pump; 2.60A {Thermotoga
maritima} PDB: 4av6_A
Length = 735
Score = 27.1 bits (60), Expect = 9.2
Identities = 11/93 (11%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 208 VASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG-----LALGVICILGSLIEFVVVKTF- 261
V+S+ + +F + I ++ ++ ++ + ++ + S++ + V
Sbjct: 262 VSSIILASYMFPIYVQKIGENLVHQVPKETIQALISYPIFFALVGLGCSMLGILYVIVKK 321
Query: 262 --DDVERAFGTGVAFGTFAVYCIIGTFFVYFVV 292
D+ +R + A+ ++ T F+ +
Sbjct: 322 PSDNPQRELNISLWTS--ALLTVVLTAFLTYFY 352
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.143 0.409
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,142,859
Number of extensions: 323270
Number of successful extensions: 840
Number of sequences better than 10.0: 1
Number of HSP's gapped: 835
Number of HSP's successfully gapped: 38
Length of query: 338
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 244
Effective length of database: 4,077,219
Effective search space: 994841436
Effective search space used: 994841436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.0 bits)