RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17628
         (338 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 50.4 bits (119), Expect = 1e-07
 Identities = 33/242 (13%), Positives = 62/242 (25%), Gaps = 9/242 (3%)

Query: 65  RGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVI 124
            G       + D      +   Q+  +           K    I     F+      ++ 
Sbjct: 211 CGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD 270

Query: 125 FYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG 184
           +    +    +  +   ++   +  +  +  T     + DK  R          M +   
Sbjct: 271 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 330

Query: 185 ALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALG 244
           A   Y+        +             I I     G   + G+   EL      G A G
Sbjct: 331 ATIVYW--------MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 382

Query: 245 VICILGSLIEFVVVKTF-DDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQI 303
              + G L   V            FG    F       I+    +  V+   K +  Q +
Sbjct: 383 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLL 442

Query: 304 QD 305
           Q+
Sbjct: 443 QE 444



 Score = 33.9 bits (76), Expect = 0.029
 Identities = 20/224 (8%), Positives = 57/224 (25%), Gaps = 11/224 (4%)

Query: 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD 164
            I +     + ++  +          L+          +  + +        F    + D
Sbjct: 25  QIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSD 84

Query: 165 KAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGP 224
           ++  R  L    I  A  +  +G+  +       +           L      F     P
Sbjct: 85  RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF---------VLLFLCGWFQGMGWP 135

Query: 225 IPGVMMGELFTPDVKGLALGVICILGSLIEFV--VVKTFDDVERAFGTGVAFGTFAVYCI 282
             G  M   ++   +G  + V     ++   +  ++               +       +
Sbjct: 136 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAIL 195

Query: 283 IGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGSASRKS 326
           +  F    +    ++  L  I++  +        +     + K 
Sbjct: 196 VALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQ 239


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 35.9 bits (81), Expect = 0.006
 Identities = 28/183 (15%), Positives = 50/183 (27%), Gaps = 7/183 (3%)

Query: 105 TIVIVGLLCFLSFSGINVVI----FYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSS 160
              + GL  F  F  +         +L  I   + S           +    ++      
Sbjct: 8   NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT---GIIFAAISLFSLLFQPLFG 64

Query: 161 LLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV 220
           LL DK G R  LL     M +       + +   L   ++ G  +  +     +      
Sbjct: 65  LLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPA 124

Query: 221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY 280
               I  V     F      +   V   LG+ I  ++    +      G+G A     + 
Sbjct: 125 VEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL 184

Query: 281 CII 283
              
Sbjct: 185 FFA 187


>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase
           C-terminal domain {Streptococcus pneumoniae [TaxId:
           1313]}
          Length = 196

 Score = 28.6 bits (63), Expect = 0.94
 Identities = 14/33 (42%), Positives = 15/33 (45%)

Query: 256 VVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFV 288
           VV  TF+D      T     T A Y I  TFFV
Sbjct: 2   VVALTFNDGPNPATTPQVLETLAKYDIKATFFV 34


>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 209

 Score = 26.8 bits (59), Expect = 3.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELF 234
           G+  V       IV +  FGPIPGV +G ++
Sbjct: 1   GMACVGRTTECTIVPANHFGPIPGVPVGTMW 31


>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
          {Bacteriophage lambda [TaxId: 10710]}
          Length = 219

 Score = 26.4 bits (57), Expect = 5.4
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 70 DIHGELDELQKELD 83
          D+HG    L  +LD
Sbjct: 20 DLHGCYTNLMNKLD 33


>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima
           [TaxId: 2336]}
          Length = 161

 Score = 25.3 bits (55), Expect = 8.0
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 225 IPGVM--MGELFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF 268
            PG++  +  L   D +  +L V  +LG   + +VV+  D  +   
Sbjct: 16  FPGLVDVVSNLIEVD-EKYSLAVSVLLGGTAQNIVVRNVDTAKAIV 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.143    0.409 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,224,994
Number of extensions: 57490
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 9
Length of query: 338
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,226,816
Effective search space: 309157632
Effective search space used: 309157632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.5 bits)