BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1763
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XAF|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 482
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 105 IMVGSEYQAWIPEGMCKYGDILPYENDD--KLLWDPNHNLVTVDLVETYLKKSHEMFING 162
+ VG +YQA +P+ E D+ L+W PN NL L E Y+ + E
Sbjct: 102 MRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNLSEAKLDE-YIAIAKE----- 155
Query: 163 AGDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRASMQS-VPNPDTTSMWSEEECKNFES 221
H + EQAL +L +N E++L A + + P PD W+ E+ FE
Sbjct: 156 --------KHGYNMEQALGMLFWHKHNIEKSL--ADLPNFTPFPDE---WTVEDKVLFEQ 202
Query: 222 GLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTE-RHDVFANKARLEKK 271
+GK F++I Q + +++ +V+FYY WKKT + V AR +K+
Sbjct: 203 AFSFHGKTFHRIQQ-MLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKR 252
>pdb|2YQK|A Chain A, Solution Structure Of The Sant Domain In Arginine-Glutamic
Acid Dipeptide (Re) Repeats
Length = 63
Score = 59.3 bits (142), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 211 WSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKT 256
W+E+E K F GLR YGKNF++I + + + GE++ FYY WKKT
Sbjct: 12 WTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKKT 57
>pdb|2CRG|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of
Mouse Mta3 Protein
Length = 70
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 211 WSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERH 259
WS E FE L YGK+F I Q+ + +++ I+++YY+WK T+R+
Sbjct: 11 WSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRY 59
>pdb|4A69|C Chain C, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
pdb|4A69|D Chain D, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
Length = 94
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 199 MQSVPNPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTER 258
M+ + +MWSE+E + F + KNF I + ++ + V E V +YYL KK E
Sbjct: 34 MKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLI-ASFLERKTVAECVLYYYLTKKNEN 92
Query: 259 H 259
+
Sbjct: 93 Y 93
>pdb|1XC5|A Chain A, Solution Structure Of The Smrt Deacetylase Activation
Domain
Length = 71
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 199 MQSVPNPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTER 258
M+ + +MWSE+E + F + KNF I + ++ + V E V +YYL KK E
Sbjct: 11 MKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLI-ASFLERKTVAECVLYYYLTKKNEN 69
Query: 259 H 259
+
Sbjct: 70 Y 70
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 276 HPGITDYMDRFLDEQEGSINPPASPNVYL 304
HPGI Y + +L++ P+SP VYL
Sbjct: 62 HPGIVRYFNAWLEKNTTEKLQPSSPKVYL 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,719,763
Number of Sequences: 62578
Number of extensions: 363861
Number of successful extensions: 530
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 7
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)