Query psy1763
Match_columns 365
No_of_seqs 222 out of 500
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 18:57:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1763.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1763hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4329|consensus 100.0 1.5E-61 3.3E-66 471.2 19.1 279 1-294 64-356 (445)
2 KOG3554|consensus 100.0 1.9E-48 4E-53 388.3 8.2 214 53-270 104-344 (693)
3 KOG1194|consensus 100.0 2.9E-28 6.3E-33 243.5 10.7 150 99-267 96-245 (534)
4 KOG4167|consensus 99.9 1.6E-26 3.4E-31 240.9 15.9 167 91-268 499-680 (907)
5 PF01448 ELM2: ELM2 domain; I 99.4 4.5E-13 9.7E-18 99.8 5.1 53 105-158 1-54 (55)
6 cd04709 BAH_MTA BAH, or Bromo 99.1 9.1E-12 2E-16 112.5 0.2 69 53-121 80-159 (164)
7 PF00249 Myb_DNA-binding: Myb- 98.4 2.5E-07 5.3E-12 66.8 3.7 45 209-254 2-48 (48)
8 smart00717 SANT SANT SWI3, AD 98.3 8.7E-07 1.9E-11 61.7 4.4 46 209-255 2-48 (49)
9 cd00167 SANT 'SWI3, ADA2, N-Co 98.1 5.3E-06 1.2E-10 56.9 4.2 44 210-254 1-45 (45)
10 KOG1878|consensus 97.6 1.7E-05 3.6E-10 89.8 0.2 59 205-264 222-280 (1672)
11 KOG2133|consensus 97.4 8.6E-05 1.9E-09 81.5 2.8 169 86-258 267-450 (1229)
12 PF13921 Myb_DNA-bind_6: Myb-l 97.0 0.00092 2E-08 49.8 3.9 41 211-252 1-41 (60)
13 TIGR01557 myb_SHAQKYF myb-like 95.9 0.013 2.8E-07 44.4 4.2 42 209-250 4-50 (57)
14 KOG2133|consensus 94.1 0.032 6.9E-07 62.1 2.8 146 80-258 56-204 (1229)
15 COG5259 RSC8 RSC chromatin rem 94.0 0.047 1E-06 56.8 3.5 50 209-259 280-329 (531)
16 COG5118 BDP1 Transcription ini 92.3 0.14 3E-06 52.3 3.7 44 208-252 365-408 (507)
17 KOG4468|consensus 90.2 0.22 4.7E-06 53.5 3.0 43 209-252 89-141 (782)
18 KOG1279|consensus 90.2 0.3 6.5E-06 51.7 4.0 44 208-252 253-296 (506)
19 PLN03212 Transcription repress 88.2 0.58 1.2E-05 45.4 4.0 43 209-252 79-121 (249)
20 KOG0457|consensus 87.9 0.54 1.2E-05 48.7 3.8 43 209-252 73-116 (438)
21 PLN03091 hypothetical protein; 85.0 1.1 2.3E-05 46.8 4.3 47 209-256 68-115 (459)
22 PF14555 UBA_4: UBA-like domai 81.8 4.9 0.00011 28.2 5.4 25 175-199 14-38 (43)
23 KOG0049|consensus 80.0 1.6 3.5E-05 47.6 3.4 42 209-251 361-403 (939)
24 PLN03212 Transcription repress 72.6 4.3 9.3E-05 39.5 3.8 43 209-252 26-70 (249)
25 PF00627 UBA: UBA/TS-N domain; 72.5 5.6 0.00012 26.9 3.4 22 176-197 16-37 (37)
26 KOG4167|consensus 70.1 0.32 6.9E-06 53.3 -4.9 141 104-258 5-150 (907)
27 smart00165 UBA Ubiquitin assoc 67.5 8.3 0.00018 25.7 3.4 22 176-197 15-36 (37)
28 PLN03091 hypothetical protein; 66.8 6.5 0.00014 41.2 3.9 43 209-251 15-58 (459)
29 cd00194 UBA Ubiquitin Associat 65.6 9.6 0.00021 25.5 3.4 22 176-197 15-36 (38)
30 KOG0048|consensus 64.2 13 0.00028 35.5 5.2 40 209-249 63-102 (238)
31 PLN03142 Probable chromatin-re 54.0 8.7 0.00019 44.4 2.4 50 206-256 822-873 (1033)
32 KOG2009|consensus 47.1 12 0.00027 40.4 2.2 41 208-249 409-449 (584)
33 PF02845 CUE: CUE domain; Int 39.3 51 0.0011 22.8 3.7 24 175-198 16-39 (42)
34 KOG0050|consensus 38.4 23 0.00051 38.0 2.5 45 208-253 7-52 (617)
35 KOG1194|consensus 36.4 29 0.00063 36.7 2.8 51 208-259 369-419 (534)
36 KOG1878|consensus 34.3 19 0.00042 42.8 1.2 51 214-265 360-410 (1672)
37 smart00546 CUE Domain that may 34.1 65 0.0014 22.3 3.5 24 175-198 17-40 (43)
38 PF06972 DUF1296: Protein of u 34.1 55 0.0012 25.3 3.3 24 176-199 21-44 (60)
39 PF03474 DMA: DMRTA motif; In 31.6 44 0.00094 23.7 2.2 17 181-197 22-38 (39)
40 TIGR00264 alpha-NAC-related pr 30.6 1.1E+02 0.0023 26.7 4.9 39 143-198 77-115 (116)
41 PF03765 CRAL_TRIO_N: CRAL/TRI 29.1 1.3E+02 0.0027 21.7 4.5 24 175-198 30-53 (55)
42 PRK06369 nac nascent polypepti 28.4 1.2E+02 0.0027 26.3 4.9 39 143-198 75-113 (115)
43 COG5114 Histone acetyltransfer 27.2 58 0.0012 33.2 3.1 43 209-252 64-107 (432)
44 PF08938 HBS1_N: HBS1 N-termin 27.1 35 0.00076 27.1 1.3 26 177-202 47-72 (79)
45 PF11626 Rap1_C: TRF2-interact 25.0 1.4E+02 0.003 24.0 4.5 55 175-229 10-76 (87)
46 COG1308 EGD2 Transcription fac 24.7 1.4E+02 0.0031 26.2 4.7 39 143-198 83-121 (122)
47 PF09336 Vps4_C: Vps4 C termin 22.3 75 0.0016 24.3 2.3 29 189-227 34-62 (62)
48 KOG0048|consensus 21.5 1.1E+02 0.0024 29.1 3.7 45 209-254 10-56 (238)
No 1
>KOG4329|consensus
Probab=100.00 E-value=1.5e-61 Score=471.23 Aligned_cols=279 Identities=39% Similarity=0.588 Sum_probs=249.0
Q ss_pred CChHHHHHhhcccCCCCCCCCCCCCCC--CCCCCCCCCCcccccCCchhhHHhhcCChhHHHHhhhcCCCCch----hhh
Q psy1763 1 MPLDELLAMYGYNEHNNERSPSHGNPL--APPVSDPLMLDEEIEDDDEEEEEEEKQPVSQLAKLYEEGCSTSS----KET 74 (365)
Q Consensus 1 mpl~ella~y~y~~~~~~~~~~~~~~~--~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~ls~~~e~~~~~~~----~~~ 74 (365)
||++||||||||++..++.+.+.+++. .++.+++|++|+.++..+....|+|+++++.-....++|.++.+ -.|
T Consensus 64 mp~~ella~yg~~a~~~i~~e~~eegss~~ae~~~dm~~d~~s~~sg~~~~EeEeetq~sddd~spSV~s~dAq~~~~~r 143 (445)
T KOG4329|consen 64 MPIRELLALYGYTAASPIMEENVEEGSSAAAEPDDDMIFDSGSTMSGTSQLEEEEETQSSDDDASPSVDSEDAQKYEGIR 143 (445)
T ss_pred CcHHHHHHHhccccCCcchhhccccccccccCCChhhcccccccccccccccccccccccccccCcccchhhhhhhcccc
Confidence 999999999999999998766555555 88999999999999999998888889999999999999998887 113
Q ss_pred hhh------ccccccCcccCcccCCCCCCCCCCCCCcccCCCCcccCCCCCCCC-CCCCCCCCCCceeeecCCCCCChHH
Q psy1763 75 ALS------KALEEDDDEYNFFDEHPDDDDDDPKKTIMVGSEYQAWIPEGMCKY-GDILPYENDDKLLWDPNHNLVTVDL 147 (365)
Q Consensus 75 s~~------~~~~~~d~d~~~~~y~P~~~~~~~k~eIRVG~~YQA~IPe~l~~~-~d~~~~e~~d~LLW~P~~~~lse~~ 147 (365)
+++ -+.+.+++|. ++.|. ++||++||||+.|||+||.+.+.+ ....+|+|.++|||+|.. +++++
T Consensus 144 ~~~rf~~~~~~e~~seede---~~~p~---d~wKk~ImVg~~fQAdip~~~~~~~e~~~~yenedqllwDps~--lpedE 215 (445)
T KOG4329|consen 144 KQHRFHLLDLYEDASEEDE---DAPPP---DDWKKEIMVGVLFQADIPLGNEATVEEEKRYENEDQLLWDPSN--LPEDE 215 (445)
T ss_pred ccccccccccccccccccc---cCCCc---chhhhheeeccchhccccchhhhhhhhcccccccceeeecccc--CchHH
Confidence 333 3333444444 56776 899999999999999999999984 678899999999999998 89999
Q ss_pred HHHHHHHHHh-hhhcCCCCCCCCCCCCCChHHHHHHHHHcCCCHHHHHHHHhhcCCCCCCCCCCCCHHHHHhHHHHHhhh
Q psy1763 148 VETYLKKSHE-MFINGAGDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRASMQSVPNPDTTSMWSEEECKNFESGLRMY 226 (365)
Q Consensus 148 ld~YL~~Ars-~~~~~gl~~~p~~~~~rD~E~AL~~L~~~~yDv~~AL~~L~~~~~p~~~e~~~WTeeE~~~Fe~gl~~y 226 (365)
|..||.+|.. ++...+..|+|.|++++|+|+||+.|++||||+++||++|++++++.++.+..|+++||+.|++||..|
T Consensus 216 Vie~l~k~v~~~~~~~~~p~~P~gt~vkDnEqAL~~LvkcnfDteeAlrr~rfnvk~~rd~l~~wsEeEcr~FEegl~~y 295 (445)
T KOG4329|consen 216 VIEFLLKAVVRLRKEHDQPCPPEGTEVKDNEQALYELVKCNFDTEEALRRLRFNVKTVRDDLSGWSEEECRNFEEGLELY 295 (445)
T ss_pred HHHHHHHHHHhhhcccCCCCCCccccccccHHHHHHHHHcCCcHHHHHHhcCCcceecccccccCCHHHHHHHHHHHHHh
Confidence 9999988875 455678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHhhhhhccCccchhhHhhhhhccccccchhhHhhhhhcccccccCCCCcchhhhhHhhhhccCC
Q psy1763 227 GKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFANKARLEKKKYSLHPGITDYMDRFLDEQEGSI 294 (365)
Q Consensus 227 GKdF~~I~k~~lptKsv~eiV~yYY~WKKt~ry~~~~~q~R~gKkk~~~~p~~td~~d~~~de~e~s~ 294 (365)
|||||+||++.|++|+|++||.|||+|||+.||++|.||. ..||..+.+||..++.....+
T Consensus 296 GKDF~lIr~nkvrtRsvgElVeyYYlWKkSeryd~~~qqt-------~~hp~~t~~~d~~l~~s~~~~ 356 (445)
T KOG4329|consen 296 GKDFHLIRANKVRTRSVGELVEYYYLWKKSERYDVFAQQT-------DAHPQHTPVVDPHLDASWHQG 356 (445)
T ss_pred cccHHHHHhcccccchHHHHHHHHHHhhcCcchhhHhhhc-------ccCCCCCcccccccccccccC
Confidence 9999999999999999999999999999999999999987 458999999999999888755
No 2
>KOG3554|consensus
Probab=100.00 E-value=1.9e-48 Score=388.33 Aligned_cols=214 Identities=27% Similarity=0.383 Sum_probs=192.0
Q ss_pred cCChhHHHHhhhcCCCCch---hh-------hhhhccccccCcccCcccCCCCCCC-CCCCCCcccCCCCcccCCCCCCC
Q psy1763 53 KQPVSQLAKLYEEGCSTSS---KE-------TALSKALEEDDDEYNFFDEHPDDDD-DDPKKTIMVGSEYQAWIPEGMCK 121 (365)
Q Consensus 53 ~~~~~~ls~~~e~~~~~~~---~~-------~s~~~~~~~~d~d~~~~~y~P~~~~-~~~k~eIRVG~~YQA~IPe~l~~ 121 (365)
.++|+|||||+|+||++|| |+ +++.+|++.||.|||.|+|+|.+++ ...+|+||||..|||+||+++..
T Consensus 104 rhrElFlsRQ~EsLPAthIRGKCsV~LLnete~~~~YL~~eDtFfySLVyDP~~kTLLADkGeIRVG~kYQA~i~e~l~E 183 (693)
T KOG3554|consen 104 RHRELFLSRQSESLPATHIRGKCSVTLLNETESLQSYLEKEDTFFYSLVYDPNQKTLLADKGEIRVGEKYQADIPEWLEE 183 (693)
T ss_pred HHHHHHHhhhhccCchhhhccceeEEEecChHHHHhhccccceeEEEeeeccchhhhhccCcceeecccccccchHHHHh
Confidence 6799999999999999999 75 7889999999999999999999876 89999999999999999998764
Q ss_pred C-CCCCCCCCCCceeeecCCCCCChHHHHHHHHHHHhhh-hcCCCCCCC----------CCCCCCCh--HHHHHHHHHcC
Q psy1763 122 Y-GDILPYENDDKLLWDPNHNLVTVDLVETYLKKSHEMF-INGAGDCLP----------MGSHSRDD--EQALYLLLQCG 187 (365)
Q Consensus 122 ~-~d~~~~e~~d~LLW~P~~~~lse~~ld~YL~~Ars~~-~~~gl~~~p----------~~~~~rD~--E~AL~~L~~~~ 187 (365)
. .|.......+.+||+|.. .|+|++||+||..||++. +.++++|.. ++.++||+ .+|+.+||+++
T Consensus 184 gEeD~req~klEv~VW~ph~-pLTDrqIDQflvVARsVGtFARAlDcsSsvrqPsLhmsAAaASRDiTlFHAmdtLhr~~ 262 (693)
T KOG3554|consen 184 GEEDDREQSKLEVKVWDPHN-PLTDRQIDQFLVVARSVGTFARALDCSSSVRQPSLHMSAAAASRDITLFHAMDTLHRNN 262 (693)
T ss_pred ccccccccccceeEeecCCC-CcchhcchhhehhhhhhhHHHHhhcccccccCcchhhhhhhhcccchhhhHHHHHHHcc
Confidence 3 344455667899999997 599999999999999985 467777643 45688997 79999999999
Q ss_pred CCHHHHHHHHhhcCCC--CCCCCCCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccccccchhhHhhh
Q psy1763 188 YNTEEALRRASMQSVP--NPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFANK 265 (365)
Q Consensus 188 yDv~~AL~~L~~~~~p--~~~e~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WKKt~ry~~~~~q 265 (365)
||+.+|+..|.+.++| |+++|+.||..|..+||+++.+|||||..|+++||||||+.+||+||||||.|+|| .+|
T Consensus 263 YDl~~Ais~LVPlGGPvLCRDemEEWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sIveyYYmwKttdRY---vqq 339 (693)
T KOG3554|consen 263 YDLSKAISYLVPLGGPVLCRDEMEEWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSIVEYYYMWKTTDRY---VQQ 339 (693)
T ss_pred ccHHHHHHHhhcCCCceeehhhhhhccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHHHHHHHHHhhhhHH---HHH
Confidence 9999999999998887 89999999999999999999999999999999999999999999999999999998 666
Q ss_pred hhccc
Q psy1763 266 ARLEK 270 (365)
Q Consensus 266 ~R~gK 270 (365)
+|++.
T Consensus 340 KrlKa 344 (693)
T KOG3554|consen 340 KRLKA 344 (693)
T ss_pred Hhhhh
Confidence 66643
No 3
>KOG1194|consensus
Probab=99.95 E-value=2.9e-28 Score=243.54 Aligned_cols=150 Identities=29% Similarity=0.515 Sum_probs=126.0
Q ss_pred CCCCCCcccCCCCcccCCCCCCCCCCCCCCCCCCceeeecCCCCCChHHHHHHHHHHHhhhhcCCCCCCCCCCCCCChHH
Q psy1763 99 DDPKKTIMVGSEYQAWIPEGMCKYGDILPYENDDKLLWDPNHNLVTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDDEQ 178 (365)
Q Consensus 99 ~~~k~eIRVG~~YQA~IPe~l~~~~d~~~~e~~d~LLW~P~~~~lse~~ld~YL~~Ars~~~~~gl~~~p~~~~~rD~E~ 178 (365)
.+..+.||||.+|||.||++-....+.....+.+.|||.|... ++|.+|++|+..|...+ | ..+|+
T Consensus 96 s~~~~~i~vg~eyQA~i~~~~p~~~~~q~rd~~~~liWsp~~~-i~D~kL~EYI~~A~~rY---~----------i~ieq 161 (534)
T KOG1194|consen 96 SNVDNLIRVGTEYQAVIPPLAPQLRKEQQRDHQASLIWSPPLE-IQDDKLEEYISEAKERY---G----------IPIEQ 161 (534)
T ss_pred hccCCceeechhhhccCCCCChhhhchhhhhhccceeecCccc-CcHHHHHHHHHHHHHhc---C----------CcHHH
Confidence 4667899999999999999755422223335678899999975 89999999999998764 2 34789
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcCCCCCCCCCCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccccccc
Q psy1763 179 ALYLLLQCGYNTEEALRRASMQSVPNPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTER 258 (365)
Q Consensus 179 AL~~L~~~~yDv~~AL~~L~~~~~p~~~e~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WKKt~r 258 (365)
||++|++++||++.|+..|.. .++.+ +.||.+|+.+|++||.+|||+|++|++ .||+|++++||+|||.|||+..
T Consensus 162 AL~iL~~h~~d~d~A~~~l~r-r~~~~---d~WT~Ed~vlFe~aF~~~GK~F~kIrq-~LP~rsLaSlvqyYy~~KK~~~ 236 (534)
T KOG1194|consen 162 ALFILFWHKHDFDLAHADLAR-RTEFP---DEWTAEDIVLFEQAFQFFGKDFHKIRQ-ALPHRSLASLVQYYYSWKKTRE 236 (534)
T ss_pred HHHHHHhhcccchHHHHHHhh-cCCCc---ccchHHHHHHHHHHHHHhcccHHHHHH-HccCccHHHHHHHHHHHHHHhh
Confidence 999999999999999999964 44444 459999999999999999999999999 6999999999999999999999
Q ss_pred hhhHhhhhh
Q psy1763 259 HDVFANKAR 267 (365)
Q Consensus 259 y~~~~~q~R 267 (365)
|+.+.+.++
T Consensus 237 ~~s~~~~h~ 245 (534)
T KOG1194|consen 237 YDSQMNRHR 245 (534)
T ss_pred HHHHHHHHH
Confidence 966554433
No 4
>KOG4167|consensus
Probab=99.94 E-value=1.6e-26 Score=240.88 Aligned_cols=167 Identities=25% Similarity=0.379 Sum_probs=137.4
Q ss_pred cCCCCCCCCCCCCCcccCCCCcccCCCCCCCCCCCCCCCCCCceeeecCCC---CCChHHHHHHHHHHHhhhhcCCCCCC
Q psy1763 91 DEHPDDDDDDPKKTIMVGSEYQAWIPEGMCKYGDILPYENDDKLLWDPNHN---LVTVDLVETYLKKSHEMFINGAGDCL 167 (365)
Q Consensus 91 ~y~P~~~~~~~k~eIRVG~~YQA~IPe~l~~~~d~~~~e~~d~LLW~P~~~---~lse~~ld~YL~~Ars~~~~~gl~~~ 167 (365)
+-.|..+..+.+++|+||.+|||+||++..+. -....++..+|+|+|+.+ .+..+.|.+|+..||+.+.++|+
T Consensus 499 ~~~~g~~~~d~ePhINiG~rfQAeipelqdrs-~~~~d~h~a~lvwkpw~~~ei~~~q~rvt~l~nlaCSsa~PggG--- 574 (907)
T KOG4167|consen 499 TPGPGEQTVDVEPHINIGLRFQAEIPELQDRS-ALAQDTHKATLVWKPWPELEIHDLQQRVTNLLNLACSSALPGGG--- 574 (907)
T ss_pred eecCCCcccCCCcccccchhhhhhhhHHHhhh-hccccchhhhhcccccchhhccccHHHHHHHHHHHhhhcCCCCC---
Confidence 34455455789999999999999999987653 123346778999999974 23567899999999999887776
Q ss_pred CCCCCCCChHHHHHHHHHcCCCHHHHHHHHhhcCCC----------CCCCCCCCCHHHHHhHHHHHhhhCCChHhhhhhc
Q psy1763 168 PMGSHSRDDEQALYLLLQCGYNTEEALRRASMQSVP----------NPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNK 237 (365)
Q Consensus 168 p~~~~~rD~E~AL~~L~~~~yDv~~AL~~L~~~~~p----------~~~e~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~ 237 (365)
+|.|-|||+||++++||..||+.|...... .+...+.||+.|+++|.+||..|-|||..|++ .
T Consensus 575 ------tN~ElALH~L~EakGnv~vAlE~LLlr~p~~~~~h~la~Y~Y~gSd~WTp~E~~lF~kA~y~~~KDF~~v~k-m 647 (907)
T KOG4167|consen 575 ------TNSELALHSLFEAKGNVMVALEMLLLRKPVRLKCHPLANYHYAGSDKWTPLERKLFNKALYTYSKDFIFVQK-M 647 (907)
T ss_pred ------ccHHHHHHHHHHhcccHHHHHHHHHhcCCCCccccccceeeecCcccccHHHHHHHHHHHHHhcccHHHHHH-H
Confidence 567999999999999999999999865321 12356899999999999999999999999999 5
Q ss_pred cCccchhhHhhhhhccccccch--hhHhhhhhc
Q psy1763 238 VKTRNVGEIVQFYYLWKKTERH--DVFANKARL 268 (365)
Q Consensus 238 lptKsv~eiV~yYY~WKKt~ry--~~~~~q~R~ 268 (365)
|++|+|++||+|||.|||..++ ++....+|.
T Consensus 648 ~~~KtVaqCVeyYYtWKK~~~~~~~~~~dc~r~ 680 (907)
T KOG4167|consen 648 VKSKTVAQCVEYYYTWKKIMRLGRKIIDDCVRS 680 (907)
T ss_pred hccccHHHHHHHHHHHHHhccchhhhHhhhhhh
Confidence 9999999999999999999984 555555443
No 5
>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex []. The domain is usually found to the N terminus of a myb-like DNA binding domain and a GATA binding domain. ELM2, in some instances, is also found associated with the ARID DNA binding domain IPR001606 from INTERPRO. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Probab=99.39 E-value=4.5e-13 Score=99.85 Aligned_cols=53 Identities=36% Similarity=0.527 Sum_probs=43.5
Q ss_pred cccCCCCcccCCCCCCCCCCCC-CCCCCCceeeecCCCCCChHHHHHHHHHHHhh
Q psy1763 105 IMVGSEYQAWIPEGMCKYGDIL-PYENDDKLLWDPNHNLVTVDLVETYLKKSHEM 158 (365)
Q Consensus 105 IRVG~~YQA~IPe~l~~~~d~~-~~e~~d~LLW~P~~~~lse~~ld~YL~~Ars~ 158 (365)
||||++|||+||++........ ..+++++|||.|.. .+++.+|++||..|+++
T Consensus 1 IrVG~~yQA~IP~~~~~~~~~~~~~~~~e~lvW~P~~-~~~d~~l~~yl~~A~s~ 54 (55)
T PF01448_consen 1 IRVGPEYQAEIPELLPDSERDEDQEEDEEELVWSPNN-PLSDRKLEEYLKVAKSS 54 (55)
T ss_pred CCcCCccCCcCCCCccccccccccccccceEeECCCC-CCCHHHHHHHHHHHHhc
Confidence 8999999999999887653322 22358999999984 48999999999999874
No 6
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.13 E-value=9.1e-12 Score=112.54 Aligned_cols=69 Identities=19% Similarity=0.148 Sum_probs=62.2
Q ss_pred cCChhHHHHhhhcCCCCch---hh-------hhhhccccccCcccCcccCCCCCCC-CCCCCCcccCCCCcccCCCCCCC
Q psy1763 53 KQPVSQLAKLYEEGCSTSS---KE-------TALSKALEEDDDEYNFFDEHPDDDD-DDPKKTIMVGSEYQAWIPEGMCK 121 (365)
Q Consensus 53 ~~~~~~ls~~~e~~~~~~~---~~-------~s~~~~~~~~d~d~~~~~y~P~~~~-~~~k~eIRVG~~YQA~IPe~l~~ 121 (365)
+++|+|+|++++.+|+++| |. .++..++..+|.|+|.+.|+|.+++ .+++|+||||+.|||.||+++..
T Consensus 80 ~~rELF~S~~~d~~p~~~IrGKC~V~~~~d~~~l~~~~~~~d~Ff~~~~YDP~~k~l~~~~geirvg~~~qa~~p~~~~~ 159 (164)
T cd04709 80 RHRELFLSRQVETLPATHIRGKCSVTLLNDTESARSYLAREDTFFYSLVYDPEQKTLLADQGEIRVGPSYQAKLPDLQPF 159 (164)
T ss_pred CcceeEEecccccccHHHeeeeEEEEEehhhhhhhhccCCCCEEEEEEEECCCCCeecccceeEEecCcccccCCcccCC
Confidence 7899999999999999999 75 4567888889999999999999876 89999999999999999998764
No 7
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.41 E-value=2.5e-07 Score=66.77 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=40.6
Q ss_pred CCCCHHHHHhHHHHHhhhCCC-hHhhhhhccC-ccchhhHhhhhhccc
Q psy1763 209 SMWSEEECKNFESGLRMYGKN-FYQIHQNKVK-TRNVGEIVQFYYLWK 254 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKd-F~~I~k~~lp-tKsv~eiV~yYY~WK 254 (365)
..||++|..+|.+++.+||++ |..|++ .|+ +||..+|..+|+.++
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAK-RMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHH-HHSSSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHH-HcCCCCCHHHHHHHHHhhC
Confidence 369999999999999999999 999999 688 999999999999764
No 8
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.31 E-value=8.7e-07 Score=61.68 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=43.1
Q ss_pred CCCCHHHHHhHHHHHhhhC-CChHhhhhhccCccchhhHhhhhhcccc
Q psy1763 209 SMWSEEECKNFESGLRMYG-KNFYQIHQNKVKTRNVGEIVQFYYLWKK 255 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yG-KdF~~I~k~~lptKsv~eiV~yYY~WKK 255 (365)
..||++|..+|..++.+|| ++|..|+. .+++|+..+|..+|+.+++
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~-~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAK-ELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999 99999999 6999999999999998765
No 9
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.07 E-value=5.3e-06 Score=56.88 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=41.0
Q ss_pred CCCHHHHHhHHHHHhhhC-CChHhhhhhccCccchhhHhhhhhccc
Q psy1763 210 MWSEEECKNFESGLRMYG-KNFYQIHQNKVKTRNVGEIVQFYYLWK 254 (365)
Q Consensus 210 ~WTeeE~~~Fe~gl~~yG-KdF~~I~k~~lptKsv~eiV~yYY~WK 254 (365)
.||.+|...|..++.+|| ++|..|.+ .+++|+..+|..+|+.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~-~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAK-ELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHh-HcCCCCHHHHHHHHHHhC
Confidence 499999999999999999 99999999 799999999999998753
No 10
>KOG1878|consensus
Probab=97.57 E-value=1.7e-05 Score=89.85 Aligned_cols=59 Identities=34% Similarity=0.431 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccccccchhhHhh
Q psy1763 205 PDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFAN 264 (365)
Q Consensus 205 ~~e~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WKKt~ry~~~~~ 264 (365)
++.|+.|+++|+..|..-|.+|-|+|+.|.. ++..||+.+||-|||+.||+..|+.+.+
T Consensus 222 ~~~~n~Ws~~Ek~~fk~rf~~H~knf~~~as-~~erkSv~d~vlfyy~nkkte~yk~~~~ 280 (1672)
T KOG1878|consen 222 RQRMNEWSPEEKELFKSRFAQHVKNFGLIAS-FFERKSVSDCVLFYYLNKKTENYKKLVR 280 (1672)
T ss_pred HHHhhhccccccccccchhhhcCcchhhhhh-hhcccchhhceeeeeecccchhHHhhhc
Confidence 4578999999999999999999999999998 9999999999999999999999966554
No 11
>KOG2133|consensus
Probab=97.40 E-value=8.6e-05 Score=81.51 Aligned_cols=169 Identities=20% Similarity=0.311 Sum_probs=109.7
Q ss_pred ccCcccCCCCCCC--CCCCCCcccCCCCcccCCCCCCCCCCCCCCCCCCceeee--cCCCCCChHHHHHHHHHHHhhhhc
Q psy1763 86 EYNFFDEHPDDDD--DDPKKTIMVGSEYQAWIPEGMCKYGDILPYENDDKLLWD--PNHNLVTVDLVETYLKKSHEMFIN 161 (365)
Q Consensus 86 d~~~~~y~P~~~~--~~~k~eIRVG~~YQA~IPe~l~~~~d~~~~e~~d~LLW~--P~~~~lse~~ld~YL~~Ars~~~~ 161 (365)
+++-++|.|+.+. ......|++|..|||.+|-+..-. .-.-..+..+++. |+. +--..+..||..++.....
T Consensus 267 ~fk~agglpps~k~a~P~~~~~l~gap~~aglph~~~~~--~g~~s~rp~~~yrasP~g--~g~~p~p~~i~s~~a~~pg 342 (1229)
T KOG2133|consen 267 FFKCAGGLPPSTKPASPTHYAILPGAPFQAGLPHMAECS--VGDDSDRPLLLYRASPNG--IGSGPEPDYIKSARAYRPG 342 (1229)
T ss_pred eeecccCCCCCCCCCCCccccccCCCCccCCCCccccCC--CCCcccccccccccCCCc--CCCCCCCcccccccccCCC
Confidence 3333456666443 347789999999999999643321 1122345556666 665 5445567788887753211
Q ss_pred C-CCC-CCCCCCCCC-------ChHHHHHHHHHcCCCHHHHHHHHhhcCCCCCCCCCCCC--HHHHHhHHHHHhhhCCCh
Q psy1763 162 G-AGD-CLPMGSHSR-------DDEQALYLLLQCGYNTEEALRRASMQSVPNPDTTSMWS--EEECKNFESGLRMYGKNF 230 (365)
Q Consensus 162 ~-gl~-~~p~~~~~r-------D~E~AL~~L~~~~yDv~~AL~~L~~~~~p~~~e~~~WT--eeE~~~Fe~gl~~yGKdF 230 (365)
. ++. ..+.+.+.+ -...+.-.+++.+|-+..|+..+..+...........| ..+.+.|-.+...+||+|
T Consensus 343 a~stp~~~~~~~t~k~sp~slk~~~~spl~~~k~~~e~~aa~se~aaa~~~lst~~q~~SP~pd~~~gf~~~phsvg~p~ 422 (1229)
T KOG2133|consen 343 ALSTPHMLDKQKTAKSSPVSLKLMDSSPLQLHKRGYEIDAALSELAAADSSLSTDVQNMSPIPDDAKGFASGPHSVGKPF 422 (1229)
T ss_pred CCCCCCCCCcccccccccccccCCCccccchhhccccchhhhhhhhhcccccccccCCCCCCcccccccccCccccCCcc
Confidence 1 100 011111111 01133344778899999999888765433222234455 888999999999999999
Q ss_pred HhhhhhccCccchhhHhhhhhccccccc
Q psy1763 231 YQIHQNKVKTRNVGEIVQFYYLWKKTER 258 (365)
Q Consensus 231 ~~I~k~~lptKsv~eiV~yYY~WKKt~r 258 (365)
..|.++..+.-+-.+++-|||+||++..
T Consensus 423 s~~hk~q~p~~tqpqlpS~y~lw~QtPp 450 (1229)
T KOG2133|consen 423 SRIHKEQLPHHTQPQLPSYYYLWKQTPP 450 (1229)
T ss_pred ccchhccCccccCCCCchhhhhhccCCC
Confidence 9999988888899999999999999975
No 12
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=96.98 E-value=0.00092 Score=49.84 Aligned_cols=41 Identities=17% Similarity=0.343 Sum_probs=35.6
Q ss_pred CCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhc
Q psy1763 211 WSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 211 WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
||++|..+...++..||.+|..|++ .|++|+..+|...|+.
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~-~l~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAE-HLGNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHH-HSTTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHH-HHCcCCHHHHHHHHHH
Confidence 9999999999999999999999999 6899999999987776
No 13
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=95.87 E-value=0.013 Score=44.39 Aligned_cols=42 Identities=14% Similarity=0.323 Sum_probs=33.7
Q ss_pred CCCCHHHHHhHHHHHhhhCC-Ch---HhhhhhccCcc-chhhHhhhh
Q psy1763 209 SMWSEEECKNFESGLRMYGK-NF---YQIHQNKVKTR-NVGEIVQFY 250 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGK-dF---~~I~k~~lptK-sv~eiV~yY 250 (365)
-.||++|..+|.+|+..+|. ++ ..|...+..++ |..+|-.++
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~ 50 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHL 50 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHH
Confidence 46999999999999999998 99 88977444556 777765443
No 14
>KOG2133|consensus
Probab=94.13 E-value=0.032 Score=62.14 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=94.6
Q ss_pred ccccCcccCcccCCCCCC-CCCCCCCcccCCCCcccCCCCCCCCCCCCCCCCCCceeeecCCCCCChHHHHHHHHHHHhh
Q psy1763 80 LEEDDDEYNFFDEHPDDD-DDDPKKTIMVGSEYQAWIPEGMCKYGDILPYENDDKLLWDPNHNLVTVDLVETYLKKSHEM 158 (365)
Q Consensus 80 ~~~~d~d~~~~~y~P~~~-~~~~k~eIRVG~~YQA~IPe~l~~~~d~~~~e~~d~LLW~P~~~~lse~~ld~YL~~Ars~ 158 (365)
..+-|++ +|.|... ...+.++|++++.-++..|.- .+.+++.|.+....| |-.+ ++++
T Consensus 56 ~aR~ds~----~~spkvnk~~~~e~s~se~~s~~~~~P~~----------t~hEE~~~~qk~~d~-----Ds~~--~~Sl 114 (1229)
T KOG2133|consen 56 KARVDSQ----CSSPKVNKEDECEPSISEDSSDGVSSPME----------TNHEELEFSQKHYDI-----DSLY--SRSL 114 (1229)
T ss_pred hhhcccc----cCCCCCccccccccccccCcccccCCCCc----------ccccccccccccCCc-----cchh--cccc
Confidence 3444554 4688754 467889999999999998831 234578898777433 2222 5555
Q ss_pred hhcCCCCCCCCCCCCCC--hHHHHHHHHHcCCCHHHHHHHHhhcCCCCCCCCCCCCHHHHHhHHHHHhhhCCChHhhhhh
Q psy1763 159 FINGAGDCLPMGSHSRD--DEQALYLLLQCGYNTEEALRRASMQSVPNPDTTSMWSEEECKNFESGLRMYGKNFYQIHQN 236 (365)
Q Consensus 159 ~~~~gl~~~p~~~~~rD--~E~AL~~L~~~~yDv~~AL~~L~~~~~p~~~e~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~ 236 (365)
....|..|.-.-...++ ...++..+....||+..+|........+-.- -..|+..+++. . .++++|.|+.|++.
T Consensus 115 ~~dg~sn~~g~v~a~rqdT~ls~~~s~~e~~y~~~~~l~~~v~~~~p~li-a~~~~~~~~Kr-~--~~~~~k~s~~~r~~ 190 (1229)
T KOG2133|consen 115 TGDGGSNCRGIVYAYRQDTDLSGFQSHDETLYDLRDSLFVEVSQPEPYLI-AAICGFKYTKR-D--DRQVVKLSFYFRAD 190 (1229)
T ss_pred cCCCCCCCccchhhhhccccchhhccccchhhhhhhhhhhhhccCCcccc-ccccCcccccc-c--cccccccccccccc
Confidence 43332222110011111 1357778889999999999998876655332 26799988887 2 78999999999997
Q ss_pred ccCccchhhHhhhhhccccccc
Q psy1763 237 KVKTRNVGEIVQFYYLWKKTER 258 (365)
Q Consensus 237 ~lptKsv~eiV~yYY~WKKt~r 258 (365)
.++ .++ |+|+|+..
T Consensus 191 d~P--et~------y~~~m~pe 204 (1229)
T KOG2133|consen 191 DIP--ETG------YLNLMKPE 204 (1229)
T ss_pred cCc--ccc------cccccCch
Confidence 666 222 77887764
No 15
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=93.99 E-value=0.047 Score=56.81 Aligned_cols=50 Identities=18% Similarity=0.395 Sum_probs=44.5
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccccccch
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERH 259 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WKKt~ry 259 (365)
..||.+|..+..+|+..||.+|..|+. +|++|++-+||..|-..=-.++|
T Consensus 280 k~WS~qE~~LLLEGIe~ygDdW~kVA~-HVgtKt~EqCIl~FL~LPieD~~ 329 (531)
T COG5259 280 KNWSRQELLLLLEGIEMYGDDWDKVAR-HVGTKTKEQCILHFLQLPIEDNY 329 (531)
T ss_pred ccccHHHHHHHHHHHHHhhhhHHHHHH-HhCCCCHHHHHHHHHcCCcchhh
Confidence 589999999999999999999999999 59999999999877666555555
No 16
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=92.27 E-value=0.14 Score=52.31 Aligned_cols=44 Identities=23% Similarity=0.418 Sum_probs=39.6
Q ss_pred CCCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhc
Q psy1763 208 TSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 208 ~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
...||..|+.+|.+|+.+.|-||.+|.. .+|+|+..+|-.-|-.
T Consensus 365 ~~~Ws~~e~ekFYKALs~wGtdF~LIs~-lfP~R~RkqIKaKfi~ 408 (507)
T COG5118 365 ALRWSKKEIEKFYKALSIWGTDFSLISS-LFPNRERKQIKAKFIK 408 (507)
T ss_pred CCcccHHHHHHHHHHHHHhcchHHHHHH-hcCchhHHHHHHHHHH
Confidence 4789999999999999999999999999 6999999999765544
No 17
>KOG4468|consensus
Probab=90.25 E-value=0.22 Score=53.45 Aligned_cols=43 Identities=26% Similarity=0.667 Sum_probs=34.9
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhh----------hhhccCccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQI----------HQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I----------~k~~lptKsv~eiV~yYY~ 252 (365)
..||-.|...|..|+.+|||||-.| .. .+..|+.-++-.|||-
T Consensus 89 taWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s-~~~~Ktkdqvr~~yY~ 141 (782)
T KOG4468|consen 89 TAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATS-RVQSKTKDQVRHYYYR 141 (782)
T ss_pred cccchhhHHHHHHHHHHhcccHHHHHHHHHHhccccc-chhhhhhHHHHHHHHH
Confidence 5799999999999999999999998 22 2556666677778874
No 18
>KOG1279|consensus
Probab=90.22 E-value=0.3 Score=51.74 Aligned_cols=44 Identities=18% Similarity=0.431 Sum_probs=40.1
Q ss_pred CCCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhc
Q psy1763 208 TSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 208 ~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
...||++|.-+..+|+.+||.+|..|.. +|++||..+||-.+-.
T Consensus 253 ~~~WT~qE~lLLLE~ie~y~ddW~kVa~-hVg~ks~eqCI~kFL~ 296 (506)
T KOG1279|consen 253 RPNWTEQETLLLLEAIEMYGDDWNKVAD-HVGTKSQEQCILKFLR 296 (506)
T ss_pred CCCccHHHHHHHHHHHHHhcccHHHHHh-ccCCCCHHHHHHHHHh
Confidence 4789999999999999999999999999 6999999999976543
No 19
>PLN03212 Transcription repressor MYB5; Provisional
Probab=88.17 E-value=0.58 Score=45.37 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=39.5
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
..||.+|-.+-.+.+..||+.|..|++ +|+.||--+|-.+||.
T Consensus 79 gpWT~EED~lLlel~~~~GnKWs~IAk-~LpGRTDnqIKNRWns 121 (249)
T PLN03212 79 GGITSDEEDLILRLHRLLGNRWSLIAG-RIPGRTDNEIKNYWNT 121 (249)
T ss_pred CCCChHHHHHHHHHHHhccccHHHHHh-hcCCCCHHHHHHHHHH
Confidence 679999999999999999999999999 7999999999877764
No 20
>KOG0457|consensus
Probab=87.86 E-value=0.54 Score=48.71 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=40.5
Q ss_pred CCCCHHHHHhHHHHHhhhC-CChHhhhhhccCccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYG-KNFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yG-KdF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
..||.+|--+|.+|+.+|| -||..|+. .|++|+-.+|..+|+-
T Consensus 73 ~~WtadEEilLLea~~t~G~GNW~dIA~-hIGtKtkeeck~hy~k 116 (438)
T KOG0457|consen 73 PSWTADEEILLLEAAETYGFGNWQDIAD-HIGTKTKEECKEHYLK 116 (438)
T ss_pred CCCChHHHHHHHHHHHHhCCCcHHHHHH-HHcccchHHHHHHHHH
Confidence 7899999999999999999 88999999 6999999999999884
No 21
>PLN03091 hypothetical protein; Provisional
Probab=85.04 E-value=1.1 Score=46.81 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=41.8
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhc-cccc
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYL-WKKT 256 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~-WKKt 256 (365)
..||.+|-.+..+.+.+||+.|..|++ +|+.|+-.+|-.+||. .||.
T Consensus 68 gpWT~EED~lLLeL~k~~GnKWskIAk-~LPGRTDnqIKNRWnslLKKk 115 (459)
T PLN03091 68 GTFSQQEENLIIELHAVLGNRWSQIAA-QLPGRTDNEIKNLWNSCLKKK 115 (459)
T ss_pred CCCCHHHHHHHHHHHHHhCcchHHHHH-hcCCCCHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999 7999999999877764 5543
No 22
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=81.82 E-value=4.9 Score=28.25 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHhh
Q psy1763 175 DDEQALYLLLQCGYNTEEALRRASM 199 (365)
Q Consensus 175 D~E~AL~~L~~~~yDv~~AL~~L~~ 199 (365)
+.+.|...|-.|++|++.|+...-.
T Consensus 14 ~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 14 DEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp SHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4579999999999999999987643
No 23
>KOG0049|consensus
Probab=80.02 E-value=1.6 Score=47.59 Aligned_cols=42 Identities=21% Similarity=0.423 Sum_probs=37.4
Q ss_pred CCCCHHHHHhHHHHHhhhC-CChHhhhhhccCccchhhHhhhhh
Q psy1763 209 SMWSEEECKNFESGLRMYG-KNFYQIHQNKVKTRNVGEIVQFYY 251 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yG-KdF~~I~k~~lptKsv~eiV~yYY 251 (365)
..||.+|=.+...|+.+|| |++..|+. .||+||.++|-..|-
T Consensus 361 g~wt~~ED~~L~~AV~~Yg~kdw~k~R~-~vPnRSdsQcR~RY~ 403 (939)
T KOG0049|consen 361 GRWTDQEDVLLVCAVSRYGAKDWAKVRQ-AVPNRSDSQCRERYT 403 (939)
T ss_pred CCCCCHHHHHHHHHHHHhCccchhhHHH-hcCCccHHHHHHHHH
Confidence 6799999999999999998 66778999 799999999987774
No 24
>PLN03212 Transcription repressor MYB5; Provisional
Probab=72.63 E-value=4.3 Score=39.49 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=37.4
Q ss_pred CCCCHHHHHhHHHHHhhhC-CChHhhhhhcc-CccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYG-KNFYQIHQNKV-KTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yG-KdF~~I~k~~l-ptKsv~eiV~yYY~ 252 (365)
..||++|=.+..+++.+|| .+|..|++ .+ +.|+-.+|-+.|..
T Consensus 26 g~WT~EEDe~L~~lV~kyG~~nW~~IAk-~~g~gRT~KQCReRW~N 70 (249)
T PLN03212 26 GPWTVEEDEILVSFIKKEGEGRWRSLPK-RAGLLRCGKSCRLRWMN 70 (249)
T ss_pred CCCCHHHHHHHHHHHHHhCcccHHHHHH-hhhcCCCcchHHHHHHH
Confidence 5799999999999999999 57999998 46 69999999987663
No 25
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=72.54 E-value=5.6 Score=26.91 Aligned_cols=22 Identities=36% Similarity=0.315 Sum_probs=19.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHH
Q psy1763 176 DEQALYLLLQCGYNTEEALRRA 197 (365)
Q Consensus 176 ~E~AL~~L~~~~yDv~~AL~~L 197 (365)
.+.|...|..|++|++.|+..|
T Consensus 16 ~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 16 REQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHhC
Confidence 4699999999999999999765
No 26
>KOG4167|consensus
Probab=70.06 E-value=0.32 Score=53.26 Aligned_cols=141 Identities=12% Similarity=-0.049 Sum_probs=96.2
Q ss_pred CcccCCCCcccCCCCCCCCCCCCCCCCCCceeeecCCCCCChHHHHHHHHHHHhhhhcCCCCCCCCCCCCCChHHH----
Q psy1763 104 TIMVGSEYQAWIPEGMCKYGDILPYENDDKLLWDPNHNLVTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDDEQA---- 179 (365)
Q Consensus 104 eIRVG~~YQA~IPe~l~~~~d~~~~e~~d~LLW~P~~~~lse~~ld~YL~~Ars~~~~~gl~~~p~~~~~rD~E~A---- 179 (365)
.+..|+.|+|-++.+..- ....+.+.....+|+|... ......-.|....++++.. .|.|.++ .+
T Consensus 5 ~~~~~s~~~a~h~~~r~l-~sqlP~~Ppapa~pnp~qq-pppQ~pP~y~~~~~S~a~~-------~G~h~~E--g~~~y~ 73 (907)
T KOG4167|consen 5 HTQSASMDGAPHSALRQL-LSQLPMEPPAPAIPNPYQQ-PPPQPPPGYTGGLSSPALQ-------VGQHPTE--GHLYYD 73 (907)
T ss_pred hhhhhhhhcccchhhhhh-hhhcCCCCCCCCCCCccCC-CCCCCCCCcCccccccccC-------CCCChhh--hhhhhh
Confidence 345678888888875332 2234556667788988762 3344444565544444432 3334433 33
Q ss_pred -HHHHHHcCCCHHHHHHHHhhcCCCCCCCCCCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccccccc
Q psy1763 180 -LYLLLQCGYNTEEALRRASMQSVPNPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTER 258 (365)
Q Consensus 180 -L~~L~~~~yDv~~AL~~L~~~~~p~~~e~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WKKt~r 258 (365)
++-|.+|+.|...+|........ ...--.|+..+.-.|..|..+-|++|..|+- ....+..+++|.-||.|+++.-
T Consensus 74 ~~qPl~r~k~n~g~pl~a~~~~~~--~~~qm~~~qy~~Pq~l~g~s~q~~~~p~I~s-~~qqlRsS~pv~pp~~qfp~~~ 150 (907)
T KOG4167|consen 74 YQQPLARVKVNGGQPLQAPQMLSQ--HMQQMQQHQYYPPQQLQGASQQRISMPEIQS-QPQQLRSSQPVPPPQQQFPQQL 150 (907)
T ss_pred ccchhhhccCCCCccccccccchh--hHHHhhcccccCcchhhhhhcCCccccchhc-ccccccCCCCcCCHHHhhhhhh
Confidence 45677777777777665533221 1223569999999999999999999999998 7999999999999999998864
No 27
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=67.51 E-value=8.3 Score=25.71 Aligned_cols=22 Identities=32% Similarity=0.199 Sum_probs=19.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHH
Q psy1763 176 DEQALYLLLQCGYNTEEALRRA 197 (365)
Q Consensus 176 ~E~AL~~L~~~~yDv~~AL~~L 197 (365)
.+.|+..|+.|++|++.|+..|
T Consensus 15 ~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 15 REEALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHHHHhCCCHHHHHHHH
Confidence 4699999999999999998765
No 28
>PLN03091 hypothetical protein; Provisional
Probab=66.75 E-value=6.5 Score=41.20 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=36.9
Q ss_pred CCCCHHHHHhHHHHHhhhCC-ChHhhhhhccCccchhhHhhhhh
Q psy1763 209 SMWSEEECKNFESGLRMYGK-NFYQIHQNKVKTRNVGEIVQFYY 251 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGK-dF~~I~k~~lptKsv~eiV~yYY 251 (365)
..||++|=++..+++.+||. +|..|.+...+.|+-.+|-+.|+
T Consensus 15 g~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~ 58 (459)
T PLN03091 15 GLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWI 58 (459)
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHH
Confidence 46999999999999999995 79999984335899999997766
No 29
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=65.64 E-value=9.6 Score=25.51 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=19.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHH
Q psy1763 176 DEQALYLLLQCGYNTEEALRRA 197 (365)
Q Consensus 176 ~E~AL~~L~~~~yDv~~AL~~L 197 (365)
.+.|+..|..|++|++.|+..|
T Consensus 15 ~~~~~~AL~~~~~d~~~A~~~L 36 (38)
T cd00194 15 REEARKALRATNNNVERAVEWL 36 (38)
T ss_pred HHHHHHHHHHhCCCHHHHHHHH
Confidence 5699999999999999999876
No 30
>KOG0048|consensus
Probab=64.17 E-value=13 Score=35.45 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=37.8
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhh
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQF 249 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~y 249 (365)
..||++|-.+-.++...+|.-|..|++ .||-||=-+|-.|
T Consensus 63 g~fT~eEe~~Ii~lH~~~GNrWs~IA~-~LPGRTDNeIKN~ 102 (238)
T KOG0048|consen 63 GNFSDEEEDLIIKLHALLGNRWSLIAG-RLPGRTDNEVKNH 102 (238)
T ss_pred CCCCHHHHHHHHHHHHHHCcHHHHHHh-hCCCcCHHHHHHH
Confidence 679999999999999999999999999 7999999999766
No 31
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=54.02 E-value=8.7 Score=44.38 Aligned_cols=50 Identities=20% Similarity=0.498 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHhHHHHHhhhCCC-hHhhhhhccCccchhhHhhhhhc-cccc
Q psy1763 206 DTTSMWSEEECKNFESGLRMYGKN-FYQIHQNKVKTRNVGEIVQFYYL-WKKT 256 (365)
Q Consensus 206 ~e~~~WTeeE~~~Fe~gl~~yGKd-F~~I~k~~lptKsv~eiV~yYY~-WKKt 256 (365)
..+..||.-+-..|.+|..+||.+ +..|+. .|..|+..+|-+|+=. |++-
T Consensus 822 ~gf~~w~~~~f~~f~~~~~~~gr~~~~~i~~-~~~~k~~~ev~~y~~~f~~~~ 873 (1033)
T PLN03142 822 EGFSTWSRRDFNAFIRACEKYGRNDIKSIAS-EMEGKTEEEVERYAKVFWERY 873 (1033)
T ss_pred cCcCcccHHHHHHHHHHHHHhCHhHHHHHHH-HhcCCCHHHHHHHHHHHHHhh
Confidence 346889999999999999999965 899999 6999999999988875 7653
No 32
>KOG2009|consensus
Probab=47.12 E-value=12 Score=40.42 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=37.3
Q ss_pred CCCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhh
Q psy1763 208 TSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQF 249 (365)
Q Consensus 208 ~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~y 249 (365)
...|+.+|..+|.+++...|.+|..|.. ..|.|....|-.=
T Consensus 409 ~~~w~~se~e~fyka~~~~gs~~slis~-l~p~R~rk~iK~K 449 (584)
T KOG2009|consen 409 TDKWDASETELFYKALSERGSDFSLISN-LFPLRDRKQIKAK 449 (584)
T ss_pred cCcccchhhHHhhhHHhhhccccccccc-ccccccHHHHHHH
Confidence 4789999999999999999999999999 7999999888653
No 33
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=39.34 E-value=51 Score=22.79 Aligned_cols=24 Identities=21% Similarity=0.087 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHh
Q psy1763 175 DDEQALYLLLQCGYNTEEALRRAS 198 (365)
Q Consensus 175 D~E~AL~~L~~~~yDv~~AL~~L~ 198 (365)
+.+....+|.++++|++.|+..|.
T Consensus 16 ~~~~I~~~L~~~~~~ve~ai~~LL 39 (42)
T PF02845_consen 16 DREVIEAVLQANNGDVEAAIDALL 39 (42)
T ss_dssp -HHHHHHHHHHTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 457888899999999999999885
No 34
>KOG0050|consensus
Probab=38.42 E-value=23 Score=37.97 Aligned_cols=45 Identities=18% Similarity=0.427 Sum_probs=40.4
Q ss_pred CCCCCHHHHHhHHHHHhhhCCC-hHhhhhhccCccchhhHhhhhhcc
Q psy1763 208 TSMWSEEECKNFESGLRMYGKN-FYQIHQNKVKTRNVGEIVQFYYLW 253 (365)
Q Consensus 208 ~~~WTeeE~~~Fe~gl~~yGKd-F~~I~k~~lptKsv~eiV~yYY~W 253 (365)
+..|+..|-....-++.+||++ |..|.+ .+..|+-.+|-.-||-|
T Consensus 7 ggvwrntEdeilkaav~kyg~nqws~i~s-ll~~kt~rqC~~rw~e~ 52 (617)
T KOG0050|consen 7 GGVWRNTEDEVLKAAVMKYGKNQWSRIAS-LLNRKTARQCKARWEEW 52 (617)
T ss_pred cceecccHHHHHHHHHHHcchHHHHHHHH-HHhhcchhHHHHHHHHH
Confidence 4679999999999999999998 999999 89999999999888866
No 35
>KOG1194|consensus
Probab=36.42 E-value=29 Score=36.73 Aligned_cols=51 Identities=6% Similarity=-0.016 Sum_probs=45.8
Q ss_pred CCCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccccccch
Q psy1763 208 TSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERH 259 (365)
Q Consensus 208 ~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WKKt~ry 259 (365)
...|+.++..+-..++++||++|..|.- .++.+++.+.++|+-...+...+
T Consensus 369 n~~~~T~~~la~v~~I~~~~~~~~pl~w-rik~t~cmee~e~l~~~~Rr~mf 419 (534)
T KOG1194|consen 369 NRCFDTPAALALIDNIKRKHHMCVPLVW-RVKQTKCMEENEILNEEARRQMF 419 (534)
T ss_pred ccccCcHHHHHHHHHHHHhccCcchhhh-HhcCcchhhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999988 79999999999999877766555
No 36
>KOG1878|consensus
Probab=34.26 E-value=19 Score=42.78 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=44.4
Q ss_pred HHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccccccchhhHhhh
Q psy1763 214 EECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFANK 265 (365)
Q Consensus 214 eE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WKKt~ry~~~~~q 265 (365)
+|+..-..|+..||.++-.|.. .+.+++..+|-.||...|++.+.+...++
T Consensus 360 ee~ev~k~Glveh~R~~aai~p-~vvt~tes~c~na~a~~~~r~N~d~~ld~ 410 (1672)
T KOG1878|consen 360 EEMEVAKSGLVEHGREWAAILP-KVVTKTESQCKNAYAKYKNRHNLDEPLDQ 410 (1672)
T ss_pred hhhhhhhccchhhhhhHHHhcC-ccceecccchhhHHHhhhhhhcchhhhhh
Confidence 5777888999999999999999 69999999999999999999887544433
No 37
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=34.11 E-value=65 Score=22.28 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHh
Q psy1763 175 DDEQALYLLLQCGYNTEEALRRAS 198 (365)
Q Consensus 175 D~E~AL~~L~~~~yDv~~AL~~L~ 198 (365)
+.+.+-.+|..+++|++.|+..|.
T Consensus 17 ~~~~I~~~L~~~~g~ve~~i~~LL 40 (43)
T smart00546 17 DEEVIKAVLEANNGNVEATINNLL 40 (43)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 456888999999999999998885
No 38
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=34.08 E-value=55 Score=25.33 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHhh
Q psy1763 176 DEQALYLLLQCGYNTEEALRRASM 199 (365)
Q Consensus 176 ~E~AL~~L~~~~yDv~~AL~~L~~ 199 (365)
.+.....|..||.|..+|..+|..
T Consensus 21 e~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 21 EEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHh
Confidence 578899999999999999999974
No 39
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=31.56 E-value=44 Score=23.74 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=14.4
Q ss_pred HHHHHcCCCHHHHHHHH
Q psy1763 181 YLLLQCGYNTEEALRRA 197 (365)
Q Consensus 181 ~~L~~~~yDv~~AL~~L 197 (365)
-+|..|++|+-+|++.+
T Consensus 22 ~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 22 LILQRCNGDVVQAIEQF 38 (39)
T ss_pred HHHHHcCCcHHHHHHHh
Confidence 45788999999999865
No 40
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=30.57 E-value=1.1e+02 Score=26.74 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=30.9
Q ss_pred CChHHHHHHHHHHHhhhhcCCCCCCCCCCCCCChHHHHHHHHHcCCCHHHHHHHHh
Q psy1763 143 VTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRAS 198 (365)
Q Consensus 143 lse~~ld~YL~~Ars~~~~~gl~~~p~~~~~rD~E~AL~~L~~~~yDv~~AL~~L~ 198 (365)
+++++|+--+..|. . +.+.|...|-.||+|+..|+..|.
T Consensus 77 i~~eDI~lV~eq~g-------v----------s~e~A~~AL~~~~gDl~~AI~~L~ 115 (116)
T TIGR00264 77 ITEDDIELVMKQCN-------V----------SKEEARRALEECGGDLAEAIMKLE 115 (116)
T ss_pred CCHHHHHHHHHHhC-------c----------CHHHHHHHHHHcCCCHHHHHHHhh
Confidence 88999987655442 2 246999999999999999998873
No 41
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=29.10 E-value=1.3e+02 Score=21.74 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHh
Q psy1763 175 DDEQALYLLLQCGYNTEEALRRAS 198 (365)
Q Consensus 175 D~E~AL~~L~~~~yDv~~AL~~L~ 198 (365)
++...|..|.-.+||+++|..+|.
T Consensus 30 ~d~~llRFLRARkf~v~~A~~mL~ 53 (55)
T PF03765_consen 30 DDNFLLRFLRARKFDVEKAFKMLK 53 (55)
T ss_dssp SHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHccCCHHHHHHHHH
Confidence 567899999999999999999885
No 42
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=28.39 E-value=1.2e+02 Score=26.28 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHHHhhhhcCCCCCCCCCCCCCChHHHHHHHHHcCCCHHHHHHHHh
Q psy1763 143 VTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRAS 198 (365)
Q Consensus 143 lse~~ld~YL~~Ars~~~~~gl~~~p~~~~~rD~E~AL~~L~~~~yDv~~AL~~L~ 198 (365)
+++++|+--+..+ |+ +.+.|...|-.||+|+..|+..|.
T Consensus 75 i~~edI~lv~~q~-------gv----------s~~~A~~AL~~~~gDl~~AI~~L~ 113 (115)
T PRK06369 75 IPEEDIELVAEQT-------GV----------SEEEARKALEEANGDLAEAILKLS 113 (115)
T ss_pred CCHHHHHHHHHHH-------Cc----------CHHHHHHHHHHcCCcHHHHHHHHh
Confidence 7899998765543 22 246999999999999999999874
No 43
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=27.22 E-value=58 Score=33.21 Aligned_cols=43 Identities=23% Similarity=0.314 Sum_probs=39.2
Q ss_pred CCCCHHHHHhHHHHHhhhC-CChHhhhhhccCccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYG-KNFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yG-KdF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
+.|+..|--+|.++....| -||..|+. .|+.|.-.+|-..||-
T Consensus 64 e~WgadEEllli~~~~TlGlGNW~dIad-yiGsr~kee~k~HylK 107 (432)
T COG5114 64 EGWGADEELLLIECLDTLGLGNWEDIAD-YIGSRAKEEIKSHYLK 107 (432)
T ss_pred CCcCchHHHHHHHHHHhcCCCcHHHHHH-HHhhhhhHHHHHHHHH
Confidence 6899999999999999999 78999998 7999999999987764
No 44
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=27.08 E-value=35 Score=27.09 Aligned_cols=26 Identities=23% Similarity=0.107 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcCC
Q psy1763 177 EQALYLLLQCGYNTEEALRRASMQSV 202 (365)
Q Consensus 177 E~AL~~L~~~~yDv~~AL~~L~~~~~ 202 (365)
.+.-..|+.++|||++||..|....+
T Consensus 47 ~~i~eal~~~~fDvekAl~~Ll~~~~ 72 (79)
T PF08938_consen 47 EQIKEALWHYYFDVEKALDYLLSKFK 72 (79)
T ss_dssp CHHHHHHHHTTT-CCHHHHHHHHCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 37778899999999999999986543
No 45
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=24.99 E-value=1.4e+02 Score=24.01 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHhhc---C-CCCCCCCCCCCHHHHHh--------HHHHHhhhCCC
Q psy1763 175 DDEQALYLLLQCGYNTEEALRRASMQ---S-VPNPDTTSMWSEEECKN--------FESGLRMYGKN 229 (365)
Q Consensus 175 D~E~AL~~L~~~~yDv~~AL~~L~~~---~-~p~~~e~~~WTeeE~~~--------Fe~gl~~yGKd 229 (365)
+.+...++|+.|.+|+..|...+... . ..+....-.||+++=.. +...+.+||..
T Consensus 10 ~~~~v~~aL~~tSgd~~~a~~~vl~~l~~g~~~P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG~~ 76 (87)
T PF11626_consen 10 SREFVTHALYATSGDPELARRFVLNFLQAGKGIPDNMPGIWTPEDDEMLRSGDKDDIERLIKKHGEE 76 (87)
T ss_dssp -HHHHHHHHHHTTTBHHHHHHHHHHCHCHTTSS-TT-TT---HHHHHHHTS--HHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhCHH
Confidence 35688899999999999999944332 1 11223335799986433 44455566643
No 46
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=24.73 E-value=1.4e+02 Score=26.18 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHHhhhhcCCCCCCCCCCCCCChHHHHHHHHHcCCCHHHHHHHHh
Q psy1763 143 VTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRAS 198 (365)
Q Consensus 143 lse~~ld~YL~~Ars~~~~~gl~~~p~~~~~rD~E~AL~~L~~~~yDv~~AL~~L~ 198 (365)
+++++|+--+..| |+ +.+.|...|-.+|||+..|+.+|.
T Consensus 83 i~eeDIkLV~eQa-------~V----------sreeA~kAL~e~~GDlaeAIm~L~ 121 (122)
T COG1308 83 ISEEDIKLVMEQA-------GV----------SREEAIKALEEAGGDLAEAIMKLT 121 (122)
T ss_pred CCHHHHHHHHHHh-------CC----------CHHHHHHHHHHcCCcHHHHHHHhc
Confidence 7888888555543 22 246999999999999999998874
No 47
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=22.27 E-value=75 Score=24.28 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=21.6
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCCCHHHHHhHHHHHhhhC
Q psy1763 189 NTEEALRRASMQSVPNPDTTSMWSEEECKNFESGLRMYG 227 (365)
Q Consensus 189 Dv~~AL~~L~~~~~p~~~e~~~WTeeE~~~Fe~gl~~yG 227 (365)
|+.+||+... ..-|.+++++|++--.+||
T Consensus 34 DF~~Al~~~k----------pSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 34 DFEEALKKVK----------PSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHHHHHHTCG----------GSS-HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcC----------CCCCHHHHHHHHHHHHHcC
Confidence 5677777654 3348999999999998887
No 48
>KOG0048|consensus
Probab=21.45 E-value=1.1e+02 Score=29.11 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=38.8
Q ss_pred CCCCHHHHHhHHHHHhhhCCC-hHhhhhhccC-ccchhhHhhhhhccc
Q psy1763 209 SMWSEEECKNFESGLRMYGKN-FYQIHQNKVK-TRNVGEIVQFYYLWK 254 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKd-F~~I~k~~lp-tKsv~eiV~yYY~WK 254 (365)
-.||.||=.+...-|.+||.. |..|.+ .++ -|.-.+|-......-
T Consensus 10 GpWt~EED~~L~~~V~~~G~~~W~~i~k-~~gl~R~GKSCRlRW~NyL 56 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGKHNGTALPK-LAGLRRCGKSCRLRWTNYL 56 (238)
T ss_pred CCCChHHHHHHHHHHHHhCCCCcchhhh-hcCCCccchHHHHHhhccc
Confidence 469999999999999999966 999999 688 899999987666543
Done!