Query psy1763
Match_columns 365
No_of_seqs 222 out of 500
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 18:57:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xag_B REST corepressor 1; ami 100.0 1.2E-36 4.2E-41 309.4 0.0 156 99-273 96-254 (482)
2 2crg_A Metastasis associated p 99.8 4.3E-20 1.5E-24 143.5 4.8 60 204-263 4-63 (70)
3 2yqk_A Arginine-glutamic acid 99.7 1.5E-18 5.2E-23 132.1 5.8 52 208-259 9-60 (63)
4 4a69_C Nuclear receptor corepr 99.7 4.8E-17 1.7E-21 133.1 4.9 51 208-259 43-93 (94)
5 2eqr_A N-COR1, N-COR, nuclear 99.6 7.3E-16 2.5E-20 116.3 5.6 54 204-258 8-61 (61)
6 2iw5_B Protein corest, REST co 99.1 4.3E-11 1.5E-15 111.4 6.5 60 204-264 129-188 (235)
7 2xag_B REST corepressor 1; ami 98.6 3.4E-08 1.2E-12 100.9 5.5 58 207-265 379-437 (482)
8 2yus_A SWI/SNF-related matrix- 97.8 2.5E-05 8.4E-10 61.6 5.1 45 208-253 18-62 (79)
9 1wgx_A KIAA1903 protein; MYB D 97.8 3.1E-05 1.1E-09 60.4 5.6 45 208-253 8-56 (73)
10 2ltp_A Nuclear receptor corepr 96.9 4.5E-06 1.6E-10 67.0 0.0 50 209-259 17-66 (89)
11 4eef_G F-HB80.4, designed hema 97.7 2E-05 6.8E-10 61.5 3.0 44 208-252 20-67 (74)
12 2cu7_A KIAA1915 protein; nucle 97.6 5E-05 1.7E-09 58.3 4.0 43 209-252 10-52 (72)
13 2cqr_A RSGI RUH-043, DNAJ homo 97.4 0.0001 3.6E-09 57.3 3.8 45 208-253 18-66 (73)
14 2yum_A ZZZ3 protein, zinc fing 97.4 0.0001 3.5E-09 56.8 3.2 41 209-250 9-55 (75)
15 1x41_A Transcriptional adaptor 97.3 0.00018 6.2E-09 53.3 4.1 42 209-251 9-51 (60)
16 2elk_A SPCC24B10.08C protein; 97.3 0.00022 7.5E-09 52.6 4.2 42 209-251 10-53 (58)
17 1guu_A C-MYB, MYB proto-oncoge 97.1 0.00049 1.7E-08 49.2 4.6 43 209-252 4-47 (52)
18 1gvd_A MYB proto-oncogene prot 97.0 0.00073 2.5E-08 48.3 4.5 43 209-252 4-47 (52)
19 2d9a_A B-MYB, MYB-related prot 97.0 0.0007 2.4E-08 49.8 4.5 43 209-252 9-52 (60)
20 2cjj_A Radialis; plant develop 96.9 0.00062 2.1E-08 55.2 4.0 43 209-252 9-55 (93)
21 2cqq_A RSGI RUH-037, DNAJ homo 96.8 0.00075 2.6E-08 52.3 3.6 40 209-250 9-52 (72)
22 2llk_A Cyclin-D-binding MYB-li 96.7 0.0015 5E-08 50.8 4.2 47 209-257 24-70 (73)
23 2dim_A Cell division cycle 5-l 96.6 0.0021 7.1E-08 48.8 4.5 43 209-252 10-53 (70)
24 1w0t_A Telomeric repeat bindin 96.5 0.0023 8E-08 45.9 4.2 45 209-254 3-50 (53)
25 1gv2_A C-MYB, MYB proto-oncoge 96.4 0.0028 9.5E-08 51.4 4.6 44 209-253 57-100 (105)
26 2k9n_A MYB24; R2R3 domain, DNA 96.2 0.003 1E-07 51.6 3.7 45 209-254 54-98 (107)
27 1h8a_C AMV V-MYB, MYB transfor 96.2 0.0054 1.8E-07 51.5 5.0 45 209-254 80-124 (128)
28 3sjm_A Telomeric repeat-bindin 96.1 0.005 1.7E-07 46.3 4.0 45 209-254 12-59 (64)
29 3osg_A MYB21; transcription-DN 96.0 0.005 1.7E-07 51.7 4.1 45 209-254 63-107 (126)
30 1ity_A TRF1; helix-turn-helix, 95.8 0.0098 3.3E-07 44.9 4.5 45 208-253 10-57 (69)
31 3osg_A MYB21; transcription-DN 95.6 0.011 3.7E-07 49.7 4.6 43 209-252 12-54 (126)
32 1gv2_A C-MYB, MYB proto-oncoge 95.5 0.014 4.6E-07 47.2 4.6 43 209-252 5-48 (105)
33 2ckx_A NGTRF1, telomere bindin 95.5 0.017 5.9E-07 45.8 4.9 72 210-290 2-77 (83)
34 1x58_A Hypothetical protein 49 95.5 0.016 5.5E-07 43.7 4.5 48 209-256 9-58 (62)
35 2din_A Cell division cycle 5-l 95.4 0.012 4.2E-07 43.9 3.7 42 209-252 10-51 (66)
36 3zqc_A MYB3; transcription-DNA 95.3 0.015 5E-07 49.1 4.4 48 209-257 55-103 (131)
37 1h89_C C-MYB, MYB proto-oncoge 95.3 0.018 6.2E-07 49.9 5.0 45 209-254 111-155 (159)
38 2k9n_A MYB24; R2R3 domain, DNA 95.2 0.017 5.9E-07 47.0 4.3 43 209-252 2-45 (107)
39 1h8a_C AMV V-MYB, MYB transfor 94.8 0.026 8.9E-07 47.3 4.5 43 209-252 28-71 (128)
40 3zqc_A MYB3; transcription-DNA 94.8 0.026 9E-07 47.5 4.4 43 209-252 3-46 (131)
41 2aje_A Telomere repeat-binding 93.9 0.082 2.8E-06 43.7 5.5 74 208-290 13-90 (105)
42 1h89_C C-MYB, MYB proto-oncoge 92.6 0.11 3.8E-06 44.9 4.6 43 209-252 59-102 (159)
43 1ofc_X ISWI protein; nuclear p 91.7 0.16 5.4E-06 49.2 4.9 50 206-256 108-159 (304)
44 2juh_A Telomere binding protei 89.9 0.22 7.5E-06 42.1 3.5 48 208-255 17-68 (121)
45 2roh_A RTBP1, telomere binding 89.8 0.28 9.5E-06 41.5 4.0 49 208-256 31-83 (122)
46 4b4c_A Chromodomain-helicase-D 89.5 0.28 9.5E-06 44.0 4.1 49 206-254 5-57 (211)
47 3hm5_A DNA methyltransferase 1 84.3 1 3.6E-05 36.3 4.3 44 209-253 31-79 (93)
48 2y9y_A Imitation switch protei 82.5 1.1 3.7E-05 44.5 4.5 50 207-257 122-174 (374)
49 1wj7_A Hypothetical protein (R 72.4 8.7 0.0003 31.6 6.3 36 175-214 53-88 (104)
50 1ign_A Protein (RAP1); RAP1,ye 71.3 3.2 0.00011 38.9 4.0 48 209-257 9-63 (246)
51 2knz_A Ubiquilin-4; cytoplasm, 66.0 6 0.0002 28.2 3.7 27 174-200 24-50 (53)
52 2jy5_A Ubiquilin-1; UBA, alter 63.7 8.1 0.00028 27.4 4.0 25 174-198 25-49 (52)
53 4iej_A DNA methyltransferase 1 63.5 8.6 0.00029 31.0 4.5 47 209-255 31-82 (93)
54 1z96_A DNA-damage, UBA-domain 62.7 8.1 0.00028 25.2 3.6 22 176-197 18-39 (40)
55 2dah_A Ubiquilin-3; UBA domain 61.3 8.2 0.00028 27.7 3.7 27 174-200 22-48 (54)
56 1veg_A NEDD8 ultimate buster-1 60.9 27 0.00092 27.4 6.9 28 175-202 42-69 (83)
57 1vg5_A RSGI RUH-014, rhomboid 60.8 9.3 0.00032 29.3 4.1 28 175-202 42-69 (73)
58 2g3q_A Protein YBL047C; endocy 59.8 8.7 0.0003 25.8 3.4 24 175-198 17-40 (43)
59 2bwb_A Ubiquitin-like protein 59.2 10 0.00034 26.3 3.7 25 174-198 20-44 (46)
60 1wr1_B Ubiquitin-like protein 58.6 12 0.0004 27.4 4.1 26 174-199 30-55 (58)
61 2xb0_X Chromo domain-containin 57.6 10 0.00035 35.9 4.6 44 209-252 4-51 (270)
62 1vej_A Riken cDNA 4931431F19; 54.1 16 0.00056 28.0 4.5 27 174-200 42-68 (74)
63 1ufz_A Hypothetical protein BA 53.9 21 0.00073 28.1 5.1 44 145-199 31-74 (83)
64 1wji_A Tudor domain containing 53.4 14 0.00048 27.3 3.9 27 175-201 22-48 (63)
65 2dna_A Unnamed protein product 53.2 16 0.00053 27.7 4.1 27 174-200 32-58 (67)
66 2cp8_A NEXT to BRCA1 gene 1 pr 52.1 11 0.00039 27.3 3.1 29 173-201 21-49 (54)
67 2cwb_A Chimera of immunoglobul 49.9 15 0.00052 30.2 3.9 27 174-200 79-105 (108)
68 1ify_A HHR23A, UV excision rep 49.6 11 0.00036 26.4 2.6 25 175-199 21-45 (49)
69 1wgl_A TOLL-interacting protei 45.6 26 0.00088 25.6 4.2 28 174-201 23-50 (59)
70 1wgn_A UBAP1, ubiquitin associ 44.4 18 0.00061 27.1 3.1 27 176-202 33-59 (63)
71 2dal_A Protein KIAA0794; FAS a 44.3 31 0.0011 25.2 4.5 25 176-200 30-54 (62)
72 1otr_A Protein CUE2; protein-p 40.4 25 0.00084 24.9 3.3 27 174-200 18-44 (49)
73 2di0_A Activating signal coint 39.6 93 0.0032 23.7 6.6 49 143-203 8-56 (71)
74 2cp9_A EF-TS, EF-TSMT, elongat 36.0 29 0.001 25.9 3.2 25 176-200 24-48 (64)
75 1v92_A NSFL1 cofactor P47; 3-h 35.8 28 0.00094 23.3 2.9 24 175-198 19-42 (46)
76 1irz_A ARR10-B; helix-turn-hel 35.1 24 0.00081 26.4 2.6 21 209-229 8-28 (64)
77 3e21_A HFAF1, FAS-associated f 34.4 30 0.001 24.0 2.9 23 175-197 20-42 (45)
78 2dak_A Ubiquitin carboxyl-term 33.9 28 0.00097 25.3 2.9 25 176-200 23-47 (63)
79 2dam_A ETEA protein; KIAA0887, 33.9 39 0.0013 25.1 3.7 25 175-199 33-57 (67)
80 2dhy_A CUE domain-containing p 30.5 45 0.0015 25.0 3.5 26 174-199 32-57 (67)
81 1dv0_A DNA repair protein HHR2 29.4 33 0.0011 23.7 2.4 24 175-198 17-40 (47)
82 1wiv_A UBP14, ubiquitin-specif 29.3 49 0.0017 25.0 3.6 26 175-200 42-67 (73)
83 1q02_A Sequestosome 1; helical 28.6 46 0.0016 24.0 3.1 21 180-200 30-50 (52)
84 2ekk_A UBA domain from E3 ubiq 27.6 68 0.0023 21.7 3.8 22 176-198 23-44 (47)
85 1ug2_A 2610100B20RIK gene prod 27.1 81 0.0028 25.4 4.6 45 206-251 31-78 (95)
86 1tr8_A Conserved protein (MTH1 25.2 82 0.0028 25.4 4.4 38 143-197 64-101 (102)
87 2d9s_A CBL E3 ubiquitin protei 23.5 1E+02 0.0035 22.3 4.1 27 175-201 22-48 (53)
88 2cpw_A CBL-interacting protein 23.2 77 0.0026 23.2 3.6 24 176-199 33-57 (64)
89 1oai_A Nuclear RNA export fact 22.3 88 0.003 22.7 3.7 25 175-199 21-45 (59)
90 4b4c_A Chromodomain-helicase-D 20.3 67 0.0023 28.1 3.3 37 208-246 134-171 (211)
No 1
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=100.00 E-value=1.2e-36 Score=309.37 Aligned_cols=156 Identities=28% Similarity=0.456 Sum_probs=0.0
Q ss_pred CCCCCCcccCCCCcccCCCCCCCC--CCCCCCCCCCceeeecCCCCCChHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCh
Q psy1763 99 DDPKKTIMVGSEYQAWIPEGMCKY--GDILPYENDDKLLWDPNHNLVTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDD 176 (365)
Q Consensus 99 ~~~k~eIRVG~~YQA~IPe~l~~~--~d~~~~e~~d~LLW~P~~~~lse~~ld~YL~~Ars~~~~~gl~~~p~~~~~rD~ 176 (365)
+.++++||||++|||+||+++... .+....+++++|||.|... |++.+|++||..|+++. ..|+
T Consensus 96 ~~~~~eIRVG~~YQAeIPe~~~~~~~~~~~~~~~~e~LvW~P~~~-l~d~~ldeYL~~Ars~~-------------g~n~ 161 (482)
T 2xag_B 96 EHGGGGMRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQN-LSEAKLDEYIAIAKEKH-------------GYNM 161 (482)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCCCCCccCccCCCccCCCccccccccCccceeEecCCCC-CCHHHHHHHHHHHHHhc-------------CccH
Confidence 577899999999999999987432 1223346789999999964 89999999999998752 1357
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcCCCCCCCCCCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccccc
Q psy1763 177 EQALYLLLQCGYNTEEALRRASMQSVPNPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKT 256 (365)
Q Consensus 177 E~AL~~L~~~~yDv~~AL~~L~~~~~p~~~e~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WKKt 256 (365)
|+||++||+|+||+++||..|... .+ ....||++|+++|+++|.+|||+|+.|++ +||+|++++||+|||+|||+
T Consensus 162 EqAL~~L~~~~yDi~~AL~~L~~~-~p---~~d~WT~eE~~lFe~al~~yGKdF~~I~~-~lp~Ksv~e~V~yYY~WKKt 236 (482)
T 2xag_B 162 EQALGMLFWHKHNIEKSLADLPNF-TP---FPDEWTVEDKVLFEQAFSFHGKTFHRIQQ-MLPDKSIASLVKFYYSWKKT 236 (482)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHccCCHHHHHHHHhcc-cc---cccccCHHHHHHHHHHHHHcCccHHHHHH-HcCCCCHHHHHHHhcccccc
Confidence 899999999999999999998632 33 24689999999999999999999999998 89999999999999999999
Q ss_pred cch-hhHhhhhhcccccc
Q psy1763 257 ERH-DVFANKARLEKKKY 273 (365)
Q Consensus 257 ~ry-~~~~~q~R~gKkk~ 273 (365)
.+| .+|.++.|++||++
T Consensus 237 ~~yk~l~~~~~rr~krk~ 254 (482)
T 2xag_B 237 RTKTSVMDRHARKQKRER 254 (482)
T ss_dssp ------------------
T ss_pred ccHHHHHHHHHhhcCCCc
Confidence 998 67777766666554
No 2
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.79 E-value=4.3e-20 Score=143.50 Aligned_cols=60 Identities=32% Similarity=0.622 Sum_probs=55.0
Q ss_pred CCCCCCCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccccccchhhHh
Q psy1763 204 NPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFA 263 (365)
Q Consensus 204 ~~~e~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WKKt~ry~~~~ 263 (365)
+++.++.||++|+++|++||.+|||||+.|++++|++|++++||+|||+|||+.+|..|.
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKkt~~y~q~~ 63 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQQK 63 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHTCCSSCSCC
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhhcCCchHHHHH
Confidence 567789999999999999999999999999996699999999999999999999984433
No 3
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-18 Score=132.08 Aligned_cols=52 Identities=44% Similarity=0.979 Sum_probs=49.5
Q ss_pred CCCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccccccch
Q psy1763 208 TSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERH 259 (365)
Q Consensus 208 ~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WKKt~ry 259 (365)
.+.||++|+++|++||.+|||||+.|++++|++|++++||+|||+|||+.++
T Consensus 9 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKkt~~~ 60 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKKTSGP 60 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHHCSSCC
T ss_pred CCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcccCCCCC
Confidence 3789999999999999999999999998679999999999999999999986
No 4
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=99.66 E-value=4.8e-17 Score=133.05 Aligned_cols=51 Identities=37% Similarity=0.545 Sum_probs=46.5
Q ss_pred CCCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccccccch
Q psy1763 208 TSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERH 259 (365)
Q Consensus 208 ~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WKKt~ry 259 (365)
++.||++|+++|++++.+|||+|+.|++ +|++||+++||+|||+|||+.+|
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~-~l~~Kt~~~cV~~YY~~Kk~~~Y 93 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIAS-FLERKTVAECVLYYYLTKKNENY 93 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHH-TCTTCCHHHHHHHHHHHSCC---
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHH-HcCCCCHHHHHHHHhccccCcCC
Confidence 4789999999999999999999999987 89999999999999999999998
No 5
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=7.3e-16 Score=116.31 Aligned_cols=54 Identities=28% Similarity=0.468 Sum_probs=50.4
Q ss_pred CCCCCCCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccccccc
Q psy1763 204 NPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTER 258 (365)
Q Consensus 204 ~~~e~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WKKt~r 258 (365)
.++.+..||++|.++|++++.+|||+|+.|+. +||+|++.+||+|||+|||+.+
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~-~l~~rt~~~~v~~Yy~~Kk~~n 61 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPKNFGLIAS-YLERKSVPDCVLYYYLTKKNEN 61 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTTCHHHHHH-HCTTSCHHHHHHHHHHHTCCCC
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCHHHHHH-HcCCCCHHHHHHHHHHhcCCCC
Confidence 45667899999999999999999999999998 7999999999999999999864
No 6
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.14 E-value=4.3e-11 Score=111.39 Aligned_cols=60 Identities=18% Similarity=0.369 Sum_probs=53.5
Q ss_pred CCCCCCCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccccccchhhHhh
Q psy1763 204 NPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFAN 264 (365)
Q Consensus 204 ~~~e~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WKKt~ry~~~~~ 264 (365)
.......||++|..+|.+|+.+|||+|+.|++ .|++||+.+|+.|||.|||..+++.+.+
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk-~VgTKT~~QcKnfY~~~kKRlnLD~ilk 188 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGRDFQAISD-VIGNKSVVQVKNFFVNYRRRFNIDEVLQ 188 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHH-HHSSCCHHHHHHHHHHTTTTTTHHHHHH
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCcCHHHHHH-HcCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 34456899999999999999999999999999 6999999999999999999888854443
No 7
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.58 E-value=3.4e-08 Score=100.91 Aligned_cols=58 Identities=21% Similarity=0.424 Sum_probs=52.5
Q ss_pred CCCCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccccccchh-hHhhh
Q psy1763 207 TTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHD-VFANK 265 (365)
Q Consensus 207 e~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WKKt~ry~-~~~~q 265 (365)
....||++|+.+|.+||.+|||||+.|.+ .|++||+.+|+.|||.||+..+++ ++.+.
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkdw~~IA~-~VgTKT~~Qvk~fy~~~kkr~~ld~il~e~ 437 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRDFQAISD-VIGNKSVVQVKNFFVNYRRRFNIDEVLQEW 437 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTCHHHHHH-HHSSCCHHHHHHHHHHTTTTTTHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHH-HhCCCCHHHHHHHHHHHHHHhChHHHHHHH
Confidence 35799999999999999999999999999 699999999999999999999985 54443
No 8
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.78 E-value=2.5e-05 Score=61.61 Aligned_cols=45 Identities=20% Similarity=0.418 Sum_probs=41.4
Q ss_pred CCCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhcc
Q psy1763 208 TSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLW 253 (365)
Q Consensus 208 ~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~W 253 (365)
...||++|-.+|.+++.+||.+|..|++ +|++||..+|..+|...
T Consensus 18 ~~~WT~eEd~~Ll~~v~~~G~~W~~IA~-~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 18 GREWTEQETLLLLEALEMYKDDWNKVSE-HVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCCCHHHHHHHHHHHHHSSSCHHHHHH-HHSSCCHHHHHHHHTTS
T ss_pred CCCcCHHHHHHHHHHHHHhCCCHHHHHH-HcCCCCHHHHHHHHHHh
Confidence 4789999999999999999999999999 69999999999887644
No 9
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.78 E-value=3.1e-05 Score=60.38 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=40.4
Q ss_pred CCCCCHHHHHhHHHHHhhhCCC----hHhhhhhccCccchhhHhhhhhcc
Q psy1763 208 TSMWSEEECKNFESGLRMYGKN----FYQIHQNKVKTRNVGEIVQFYYLW 253 (365)
Q Consensus 208 ~~~WTeeE~~~Fe~gl~~yGKd----F~~I~k~~lptKsv~eiV~yYY~W 253 (365)
...||.+|.++|++||..|+++ |..|+. .||.||+.+|++.|-.-
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~-~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAA-AVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH-HTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHH-HcCCCCHHHHHHHHHHH
Confidence 3679999999999999999985 899999 79999999999887754
No 10
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.91 E-value=4.5e-06 Score=67.02 Aligned_cols=50 Identities=30% Similarity=0.537 Sum_probs=46.8
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccccccch
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERH 259 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WKKt~ry 259 (365)
..||++|-.+|.+++.+||++|..|++ .|++||..+|..+||.+.+...+
T Consensus 17 ~~WT~eEd~~l~~~~~~~G~~W~~IA~-~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 17 QGWTEEEMGTAKKGLLEHGRNWSAIAR-MVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 579999999999999999999999999 79999999999999998887766
No 11
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.68 E-value=2e-05 Score=61.51 Aligned_cols=44 Identities=30% Similarity=0.413 Sum_probs=38.5
Q ss_pred CCCCCHHHHHhHHHHHhhhCCC----hHhhhhhccCccchhhHhhhhhc
Q psy1763 208 TSMWSEEECKNFESGLRMYGKN----FYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 208 ~~~WTeeE~~~Fe~gl~~yGKd----F~~I~k~~lptKsv~eiV~yYY~ 252 (365)
...||.+|-++||+||.+|+++ |..|+. .||.||+.+|+++|=+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~-~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQ-YVKGRTPEEVKKHYEL 67 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG-GSCSSCHHHHHGGGC-
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-HcCCCCHHHHHHHHHH
Confidence 3679999999999999999996 899999 7999999999998843
No 12
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.58 E-value=5e-05 Score=58.30 Aligned_cols=43 Identities=26% Similarity=0.498 Sum_probs=40.2
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
..||++|-.+|.+++.+||++|..|++ +|++|+..+|..+|+.
T Consensus 10 ~~WT~eEd~~l~~~~~~~G~~W~~Ia~-~~~~Rt~~q~k~r~~~ 52 (72)
T 2cu7_A 10 VKWTIEEKELFEQGLAKFGRRWTKISK-LIGSRTVLQVKSYARQ 52 (72)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHH-HHSSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHH-HcCCCCHHHHHHHHHH
Confidence 679999999999999999999999999 7999999999987763
No 13
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.40 E-value=0.0001 Score=57.28 Aligned_cols=45 Identities=20% Similarity=0.363 Sum_probs=40.2
Q ss_pred CCCCCHHHHHhHHHHHhhhC----CChHhhhhhccCccchhhHhhhhhcc
Q psy1763 208 TSMWSEEECKNFESGLRMYG----KNFYQIHQNKVKTRNVGEIVQFYYLW 253 (365)
Q Consensus 208 ~~~WTeeE~~~Fe~gl~~yG----KdF~~I~k~~lptKsv~eiV~yYY~W 253 (365)
...||.+|-++|++++.+|| ..|..|++ .||.||..+|..+|...
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~-~vpGRT~~qcr~Ry~~L 66 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIARYKLL 66 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG-GCSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHH
Confidence 36799999999999999999 56999999 79999999999887643
No 14
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=0.0001 Score=56.78 Aligned_cols=41 Identities=22% Similarity=0.423 Sum_probs=38.7
Q ss_pred CCCCHHHHHhHHHHHhhhC------CChHhhhhhccCccchhhHhhhh
Q psy1763 209 SMWSEEECKNFESGLRMYG------KNFYQIHQNKVKTRNVGEIVQFY 250 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yG------KdF~~I~k~~lptKsv~eiV~yY 250 (365)
..||++|-.+|.+++.+|| ++|..|++ +|++||..+|..+|
T Consensus 9 ~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~-~~~~Rt~~qcr~r~ 55 (75)
T 2yum_A 9 QLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD-ELGNRTAKQVASQV 55 (75)
T ss_dssp SCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH-HHSSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH-HhCCCCHHHHHHHH
Confidence 5799999999999999999 78999999 79999999999877
No 15
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.31 E-value=0.00018 Score=53.29 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=39.2
Q ss_pred CCCCHHHHHhHHHHHhhhC-CChHhhhhhccCccchhhHhhhhh
Q psy1763 209 SMWSEEECKNFESGLRMYG-KNFYQIHQNKVKTRNVGEIVQFYY 251 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yG-KdF~~I~k~~lptKsv~eiV~yYY 251 (365)
..||++|-.++.+++.+|| ++|..|++ .|+.|+..+|...|.
T Consensus 9 ~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~r~~ 51 (60)
T 1x41_A 9 PSWTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYM 51 (60)
T ss_dssp SSSCHHHHHHHHHHHHHTCTTCHHHHHH-HHTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCcHHHHHH-HhCCCCHHHHHHHHH
Confidence 6799999999999999999 79999999 799999999998775
No 16
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.29 E-value=0.00022 Score=52.61 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=38.9
Q ss_pred CCCCHHHHHhHHHHHhhhC-CChHhhhhhccC-ccchhhHhhhhh
Q psy1763 209 SMWSEEECKNFESGLRMYG-KNFYQIHQNKVK-TRNVGEIVQFYY 251 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yG-KdF~~I~k~~lp-tKsv~eiV~yYY 251 (365)
..||++|-.++.+++.+|| .+|..|++ +|+ +|+..+|...|.
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~W~~IA~-~~~~~Rt~~qcr~r~~ 53 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGNWADIAD-YVGNARTKEECRDHYL 53 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCHHHHHH-HHCSSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HHCCCCCHHHHHHHHH
Confidence 5799999999999999999 89999999 799 999999997664
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.13 E-value=0.00049 Score=49.19 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=39.5
Q ss_pred CCCCHHHHHhHHHHHhhhCC-ChHhhhhhccCccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYGK-NFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGK-dF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
..||++|-.++.+++.+||. +|..|++ .|+.|+-.+|-..|..
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~ 47 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQK 47 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHH-HcCCCCHHHHHHHHHH
Confidence 56999999999999999998 9999999 7999999999987753
No 18
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.01 E-value=0.00073 Score=48.34 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=39.3
Q ss_pred CCCCHHHHHhHHHHHhhhCC-ChHhhhhhccCccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYGK-NFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGK-dF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
..||++|-.++.+++.+||. +|..|++ .|+.|+-.+|-..|..
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~ 47 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHN 47 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcChHHHHHH-HcCCCCHHHHHHHHHH
Confidence 56999999999999999996 7999999 7999999999988764
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.00 E-value=0.0007 Score=49.85 Aligned_cols=43 Identities=14% Similarity=0.301 Sum_probs=39.7
Q ss_pred CCCCHHHHHhHHHHHhhhC-CChHhhhhhccCccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYG-KNFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yG-KdF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
..||++|-.++.+++.+|| ++|..|++ +|+.|+-.+|-.+|+.
T Consensus 9 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~ 52 (60)
T 2d9a_A 9 VKWTHEEDEQLRALVRQFGQQDWKFLAS-HFPNRTDQQCQYRWLR 52 (60)
T ss_dssp SCCCHHHHHHHHHHHHHTCTTCHHHHHH-HCSSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHH-HccCCCHHHHHHHHHH
Confidence 5799999999999999999 69999999 7999999999988764
No 20
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=96.93 E-value=0.00062 Score=55.24 Aligned_cols=43 Identities=28% Similarity=0.545 Sum_probs=38.5
Q ss_pred CCCCHHHHHhHHHHHhhhC----CChHhhhhhccCccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYG----KNFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yG----KdF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
..||.+|-++|++++.+|| ..|..|++ .||.||..+|.++|-.
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~-~vpGRT~~q~k~ry~~ 55 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYEI 55 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHH
Confidence 5799999999999999997 45899999 7999999999987754
No 21
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.83 E-value=0.00075 Score=52.25 Aligned_cols=40 Identities=15% Similarity=0.371 Sum_probs=35.3
Q ss_pred CCCCHHHHHhHHHHHhhhCC----ChHhhhhhccCccchhhHhhhh
Q psy1763 209 SMWSEEECKNFESGLRMYGK----NFYQIHQNKVKTRNVGEIVQFY 250 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGK----dF~~I~k~~lptKsv~eiV~yY 250 (365)
..||.+|.++|++++.+|++ .|..|++ .+ .||+.+|.++|
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~-~l-gRt~~eV~~~y 52 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAH-EL-GRSVTDVTTKA 52 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HH-TSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-Hh-CCCHHHHHHHH
Confidence 57999999999999999984 4899999 56 79999999865
No 22
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=96.68 E-value=0.0015 Score=50.78 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=43.4
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhcccccc
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTE 257 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WKKt~ 257 (365)
..||++|-.++.+++.+||..|..|++ .| .||-.+|-.+|+..|++.
T Consensus 24 ~~wT~EED~~L~~l~~~~G~kW~~IA~-~l-gRt~~q~knRw~~L~~~~ 70 (73)
T 2llk_A 24 GKYTPEEIEKLKELRIKHGNDWATIGA-AL-GRSASSVKDRCRLMKDTC 70 (73)
T ss_dssp CSSCHHHHHHHHHHHHHHSSCHHHHHH-HH-TSCHHHHHHHHHHCSCCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHH-Hh-CCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999999999 68 999999999999887764
No 23
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.60 E-value=0.0021 Score=48.76 Aligned_cols=43 Identities=14% Similarity=0.380 Sum_probs=39.6
Q ss_pred CCCCHHHHHhHHHHHhhhC-CChHhhhhhccCccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYG-KNFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yG-KdF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
..||++|-.++.+++.+|| +++..|++ .|+.|+-.+|-..|+.
T Consensus 10 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~l~~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 10 GVWRNTEDEILKAAVMKYGKNQWSRIAS-LLHRKSAKQCKARWYE 53 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSSCHHHHHH-HSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HhcCCCHHHHHHHHHH
Confidence 5799999999999999999 79999999 7999999999977754
No 24
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=96.54 E-value=0.0023 Score=45.93 Aligned_cols=45 Identities=33% Similarity=0.442 Sum_probs=40.2
Q ss_pred CCCCHHHHHhHHHHHhhhC-CChHhhhhhccC--ccchhhHhhhhhccc
Q psy1763 209 SMWSEEECKNFESGLRMYG-KNFYQIHQNKVK--TRNVGEIVQFYYLWK 254 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yG-KdF~~I~k~~lp--tKsv~eiV~yYY~WK 254 (365)
..||++|-.+..+++.+|| .++..|++ .++ .|+-.+|-..|....
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999 69999999 699 999999998776544
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.44 E-value=0.0028 Score=51.36 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=41.1
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhcc
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLW 253 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~W 253 (365)
..||++|-.++.+++.+||..|..|++ +||.||-.+|..+|+..
T Consensus 57 ~~Wt~eEd~~L~~~~~~~G~~W~~Ia~-~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 57 TSWTEEEDRIIYQAHKRLGNRWAEIAK-LLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCHHHHHT-TCTTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCCHHHHHH-HcCCCCHHHHHHHHHHH
Confidence 679999999999999999999999999 79999999999888754
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.24 E-value=0.003 Score=51.64 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=41.4
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccc
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWK 254 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WK 254 (365)
..||++|-.++.+++.+||..|..|++ +||.||-.+|-.+|+...
T Consensus 54 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~-~l~gRt~~~~k~rw~~l~ 98 (107)
T 2k9n_A 54 DPWSPEEDMLLDQKYAEYGPKWNKISK-FLKNRSDNNIRNRWMMIA 98 (107)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHH-HHSSSCHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCcCHHHHHH-HCCCCCHHHHHHHHHHHH
Confidence 679999999999999999999999999 799999999998877544
No 27
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.17 E-value=0.0054 Score=51.50 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=41.5
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccc
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWK 254 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WK 254 (365)
..||++|-.++.+++.+||+.+..|++ +||.||-.+|..+|+...
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~-~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAK-LLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGG-GSTTCCHHHHHHHHHTTT
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHH-HCCCCCHHHHHHHHHHHH
Confidence 679999999999999999999999999 799999999998887543
No 28
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=96.09 E-value=0.005 Score=46.32 Aligned_cols=45 Identities=24% Similarity=0.407 Sum_probs=38.6
Q ss_pred CCCCHHHHHhHHHHHhhhC-CChHhhhhhccC--ccchhhHhhhhhccc
Q psy1763 209 SMWSEEECKNFESGLRMYG-KNFYQIHQNKVK--TRNVGEIVQFYYLWK 254 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yG-KdF~~I~k~~lp--tKsv~eiV~yYY~WK 254 (365)
..||++|-.+..+++.+|| ++|..|++ .++ .|+-.+|-..|...+
T Consensus 12 ~~WT~eED~~L~~~V~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 12 QKWTVEESEWVKAGVQKYGEGNWAAISK-NYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCCchHHHHh-hcCCCCCCHHHHHHHHHHHh
Confidence 5699999999999999999 58999998 455 899999988776543
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.01 E-value=0.005 Score=51.73 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=41.3
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccc
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWK 254 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WK 254 (365)
..||++|-.++.+++.+||+.|..|++ .|+.||-.+|-..|+...
T Consensus 63 ~~WT~eEd~~L~~~v~~~G~~W~~Ia~-~l~gRt~~~~k~rw~~l~ 107 (126)
T 3osg_A 63 TPWTAEEDALLVQKIQEYGRQWAIIAK-FFPGRTDIHIKNRWVTIS 107 (126)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHHT-TSTTCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHH-HcCCCCHHHHHHHHHHHH
Confidence 579999999999999999999999999 799999999998877644
No 30
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=95.79 E-value=0.0098 Score=44.92 Aligned_cols=45 Identities=31% Similarity=0.417 Sum_probs=40.0
Q ss_pred CCCCCHHHHHhHHHHHhhhC-CChHhhhhhccC--ccchhhHhhhhhcc
Q psy1763 208 TSMWSEEECKNFESGLRMYG-KNFYQIHQNKVK--TRNVGEIVQFYYLW 253 (365)
Q Consensus 208 ~~~WTeeE~~~Fe~gl~~yG-KdF~~I~k~~lp--tKsv~eiV~yYY~W 253 (365)
...||++|-.+..+++.+|| .+|..|++ .++ .|+-.+|-..|...
T Consensus 10 r~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 10 RQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHH-HSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcHHHHHH-HcCcCCCCHHHHHHHHHHH
Confidence 36799999999999999999 69999999 699 99999999776643
No 31
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=95.61 E-value=0.011 Score=49.66 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=39.9
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
..||++|-.++.+++.+||.+|..|++ .|+.|+..+|-+.|..
T Consensus 12 ~~WT~eED~~L~~~v~~~G~~W~~Ia~-~~~~Rt~~qcr~Rw~~ 54 (126)
T 3osg_A 12 QKFTPEEDEMLKRAVAQHGSDWKMIAA-TFPNRNARQCRDRWKN 54 (126)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCHHHHHH-TCTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHH-HcCCCCHHHHHHHHhh
Confidence 579999999999999999999999999 7999999999987764
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=95.49 E-value=0.014 Score=47.22 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=38.9
Q ss_pred CCCCHHHHHhHHHHHhhhCC-ChHhhhhhccCccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYGK-NFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGK-dF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
..||++|-.++.+++.+||. ++..|++ .|+.|+..+|-..|..
T Consensus 5 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHN 48 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCcHHHHhh-hhcCCCHHHHHHHHHh
Confidence 46999999999999999996 7999999 7999999999977654
No 33
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=95.47 E-value=0.017 Score=45.75 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=51.6
Q ss_pred CCCHHHHHhHHHHHhhhCC-ChHhhhhh---ccCccchhhHhhhhhccccccchhhHhhhhhcccccccCCCCcchhhhh
Q psy1763 210 MWSEEECKNFESGLRMYGK-NFYQIHQN---KVKTRNVGEIVQFYYLWKKTERHDVFANKARLEKKKYSLHPGITDYMDR 285 (365)
Q Consensus 210 ~WTeeE~~~Fe~gl~~yGK-dF~~I~k~---~lptKsv~eiV~yYY~WKKt~ry~~~~~q~R~gKkk~~~~p~~td~~d~ 285 (365)
.||++|-....+|+.+||. +|..|.+. .++.||-.+|-..|....|.... ..+.| +. .|.-.++.++
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~---~p~~~----~~--~~~p~~~~~r 72 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI---APQQR----RG--EPVPQDLLDR 72 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS---CGGGC----CS--SCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC---Ccccc----cC--CCCCHHHHHH
Confidence 5999999999999999998 99999984 37999999999887665543321 11111 11 3545667777
Q ss_pred Hhhhh
Q psy1763 286 FLDEQ 290 (365)
Q Consensus 286 ~~de~ 290 (365)
+++-+
T Consensus 73 v~~~~ 77 (83)
T 2ckx_A 73 VLAAH 77 (83)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 34
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.46 E-value=0.016 Score=43.73 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=40.2
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhhhhh--ccCccchhhHhhhhhccccc
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQIHQN--KVKTRNVGEIVQFYYLWKKT 256 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I~k~--~lptKsv~eiV~yYY~WKKt 256 (365)
..||++|.....+|+.+||+.|..|... +++.||-=+|-.-|...+|.
T Consensus 9 ~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 9 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6799999999999999999999999842 68889888888666655543
No 35
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.38 E-value=0.012 Score=43.93 Aligned_cols=42 Identities=17% Similarity=0.335 Sum_probs=37.7
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
..||.+|-.++.+++..||.+|..|++ ++.|+-.+|...|..
T Consensus 10 ~~WT~eED~~L~~~~~~~g~~W~~Ia~--~~gRt~~qcr~Rw~~ 51 (66)
T 2din_A 10 TEWSREEEEKLLHLAKLMPTQWRTIAP--IIGRTAAQCLEHYEF 51 (66)
T ss_dssp CCCCHHHHHHHHHHHHHCTTCHHHHHH--HHSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHhc--ccCcCHHHHHHHHHH
Confidence 579999999999999999999999998 456999999987664
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.34 E-value=0.015 Score=49.12 Aligned_cols=48 Identities=17% Similarity=0.190 Sum_probs=42.0
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhc-ccccc
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYL-WKKTE 257 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~-WKKt~ 257 (365)
..||++|-.++.+++.+||..+..|++ +|+.||-.+|-.+|+. .++..
T Consensus 55 ~~Wt~eEd~~L~~~~~~~G~~W~~Ia~-~l~gRt~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKLGSKWSVIAK-LIPGRTDNAIKNRWNSSISKRI 103 (131)
T ss_dssp SCCCHHHHHHHHHHHHHSCSCHHHHTT-TSTTCCHHHHHHHHHHTTGGGC
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHH-HcCCCCHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999 7999999999977764 44433
No 37
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.28 E-value=0.018 Score=49.93 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=41.4
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccc
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWK 254 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WK 254 (365)
..||++|-.++.+++.+||..+..|++ +||.||-.+|..+|+...
T Consensus 111 ~~WT~eEd~~L~~~~~~~g~~W~~Ia~-~l~gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 111 TSWTEEEDRIIYQAHKRLGNRWAEIAK-LLPGRTDNAIKNHWNSTM 155 (159)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHHT-TSTTCCHHHHHHHHHTTT
T ss_pred cCCChHHHHHHHHHHHHHCCCHHHHHH-HCCCCCHHHHHHHHHHHH
Confidence 679999999999999999999999999 799999999998887643
No 38
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=95.19 E-value=0.017 Score=47.00 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=38.6
Q ss_pred CCCCHHHHHhHHHHHhhhCC-ChHhhhhhccCccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYGK-NFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGK-dF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
..||++|-.++.+++.+||. +|..|+. .|++|+..+|-+.|..
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHH-HTTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhh-hcCCCCHHHHHHHHHH
Confidence 36999999999999999995 8999999 7999999999876653
No 39
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=94.83 E-value=0.026 Score=47.26 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=39.0
Q ss_pred CCCCHHHHHhHHHHHhhhCC-ChHhhhhhccCccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYGK-NFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGK-dF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
..||++|-.++.+++.+||. ++..|++ .|+.|+..+|...|..
T Consensus 28 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 28 GPWTKEEDQRVIEHVQKYGPKRWSDIAK-HLKGRIGKQCRERWHN 71 (128)
T ss_dssp SCCCHHHHHHHHHHHHHTCSCCHHHHHH-HSSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHH-HhcCCcHHHHHHHHHH
Confidence 57999999999999999995 7999999 7999999999977654
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=94.77 E-value=0.026 Score=47.54 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=38.8
Q ss_pred CCCCHHHHHhHHHHHhhhC-CChHhhhhhccCccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYG-KNFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yG-KdF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
..||++|-.+..+++.+|| .+|..|++ .|++|+..+|-+.|..
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~ 46 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITS-FLPNRSPKQCRERWFN 46 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTT-SCTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHH-HHCCCCHHHHHHHHhh
Confidence 3699999999999999999 78999999 7999999999977643
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=93.95 E-value=0.082 Score=43.66 Aligned_cols=74 Identities=12% Similarity=0.218 Sum_probs=53.3
Q ss_pred CCCCCHHHHHhHHHHHhhhCC-ChHhhhhhc---cCccchhhHhhhhhccccccchhhHhhhhhcccccccCCCCcchhh
Q psy1763 208 TSMWSEEECKNFESGLRMYGK-NFYQIHQNK---VKTRNVGEIVQFYYLWKKTERHDVFANKARLEKKKYSLHPGITDYM 283 (365)
Q Consensus 208 ~~~WTeeE~~~Fe~gl~~yGK-dF~~I~k~~---lptKsv~eiV~yYY~WKKt~ry~~~~~q~R~gKkk~~~~p~~td~~ 283 (365)
...||++|-.....|+.+||. .|..|.+.+ ++.||-.+|-..|....|.... .-+-| +. .|.-.+++
T Consensus 13 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~---~p~~~----rg--~~~P~~~l 83 (105)
T 2aje_A 13 RRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKI---SPQQR----RG--EPVPQELL 83 (105)
T ss_dssp CCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTC---CTTTT----TC--CSCCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC---Ccccc----cC--CCCCHHHH
Confidence 367999999999999999998 999999843 3889999999887776655432 11111 11 34446788
Q ss_pred hhHhhhh
Q psy1763 284 DRFLDEQ 290 (365)
Q Consensus 284 d~~~de~ 290 (365)
+++++-+
T Consensus 84 ~rv~~~~ 90 (105)
T 2aje_A 84 NRVLNAH 90 (105)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877644
No 42
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=92.63 E-value=0.11 Score=44.91 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=38.9
Q ss_pred CCCCHHHHHhHHHHHhhhCC-ChHhhhhhccCccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYGK-NFYQIHQNKVKTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGK-dF~~I~k~~lptKsv~eiV~yYY~ 252 (365)
..||++|-.++.+++.+||. ++..|++ +|+.|+-.+|-..|+.
T Consensus 59 ~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~ 102 (159)
T 1h89_C 59 GPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHN 102 (159)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCCHHHHHH-TSTTCCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCcccHHHHHH-HcCCCCHHHHHHHHHH
Confidence 67999999999999999995 7999999 7999999999977653
No 43
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.73 E-value=0.16 Score=49.23 Aligned_cols=50 Identities=16% Similarity=0.533 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHhHHHHHhhhCC-ChHhhhhhccCccchhhHhhhhhc-cccc
Q psy1763 206 DTTSMWSEEECKNFESGLRMYGK-NFYQIHQNKVKTRNVGEIVQFYYL-WKKT 256 (365)
Q Consensus 206 ~e~~~WTeeE~~~Fe~gl~~yGK-dF~~I~k~~lptKsv~eiV~yYY~-WKKt 256 (365)
..+..||..+-..|..|..+||. ++..|+. .|+.||+.+|.+||=. |++-
T Consensus 108 eGF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~-ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 108 QGFTAWTKRDFNQFIKANEKYGRDDIDNIAK-DVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp SSCTTCCHHHHHHHHHHHHHHCTTCHHHHTT-SSTTCCHHHHHHHHHHHHHHG
T ss_pred hhhcccCHHHHHHHHHHHHHhCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhH
Confidence 45688999999999999999998 5888999 6999999999888875 7755
No 44
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=89.95 E-value=0.22 Score=42.13 Aligned_cols=48 Identities=8% Similarity=0.148 Sum_probs=40.5
Q ss_pred CCCCCHHHHHhHHHHHhhhCC-ChHhhhhhc---cCccchhhHhhhhhcccc
Q psy1763 208 TSMWSEEECKNFESGLRMYGK-NFYQIHQNK---VKTRNVGEIVQFYYLWKK 255 (365)
Q Consensus 208 ~~~WTeeE~~~Fe~gl~~yGK-dF~~I~k~~---lptKsv~eiV~yYY~WKK 255 (365)
...||++|-....+++.+||. .|..|.+.. ++.||-.+|-..|....+
T Consensus 17 r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk 68 (121)
T 2juh_A 17 RRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 68 (121)
T ss_dssp SCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 468999999999999999998 999999853 488999999877665544
No 45
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=89.78 E-value=0.28 Score=41.54 Aligned_cols=49 Identities=10% Similarity=0.151 Sum_probs=40.9
Q ss_pred CCCCCHHHHHhHHHHHhhhCC-ChHhhhhhc---cCccchhhHhhhhhccccc
Q psy1763 208 TSMWSEEECKNFESGLRMYGK-NFYQIHQNK---VKTRNVGEIVQFYYLWKKT 256 (365)
Q Consensus 208 ~~~WTeeE~~~Fe~gl~~yGK-dF~~I~k~~---lptKsv~eiV~yYY~WKKt 256 (365)
...||++|-....+|+.+||. +|..|.+.. ++.||-.+|-..|....|.
T Consensus 31 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 31 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999998 999999852 4889999998776655543
No 46
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=89.54 E-value=0.28 Score=43.97 Aligned_cols=49 Identities=12% Similarity=0.291 Sum_probs=38.5
Q ss_pred CCCCCCCHHHHHhHHHHHhhhC---CChHhhhhh-ccCccchhhHhhhhhccc
Q psy1763 206 DTTSMWSEEECKNFESGLRMYG---KNFYQIHQN-KVKTRNVGEIVQFYYLWK 254 (365)
Q Consensus 206 ~e~~~WTeeE~~~Fe~gl~~yG---KdF~~I~k~-~lptKsv~eiV~yYY~WK 254 (365)
+.+..||..|++.|.+|+.+|| ..+-.|.++ .+..|+..+|-+||-.+-
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~ 57 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVH 57 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999 447777653 378999999999887643
No 47
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=84.34 E-value=1 Score=36.30 Aligned_cols=44 Identities=25% Similarity=0.475 Sum_probs=39.2
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhhhhhcc-----CccchhhHhhhhhcc
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQIHQNKV-----KTRNVGEIVQFYYLW 253 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~l-----ptKsv~eiV~yYY~W 253 (365)
..||.+|-...-+...+||-.|..|+. .. +.||+-+|-..||.-
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlRW~vI~D-Ry~~~~~~~Rt~EdLK~RyY~v 79 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHD-RYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHH-HSCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCeeeehh-hhccCCCCCCCHHHHHHHHHHH
Confidence 679999999999999999999999998 55 579999999777753
No 48
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=82.54 E-value=1.1 Score=44.53 Aligned_cols=50 Identities=20% Similarity=0.444 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHhHHHHHhhhCCC-hHhhhhhccC-ccchhhHhhhhhc-ccccc
Q psy1763 207 TTSMWSEEECKNFESGLRMYGKN-FYQIHQNKVK-TRNVGEIVQFYYL-WKKTE 257 (365)
Q Consensus 207 e~~~WTeeE~~~Fe~gl~~yGKd-F~~I~k~~lp-tKsv~eiV~yYY~-WKKt~ 257 (365)
.+..||.-+-..|..|..+||.+ +..|+. .|. +|++.+|.+|+=. |++-.
T Consensus 122 GF~~WnrrDF~~FI~a~~kyGR~d~~~IA~-ev~~~Kt~eEV~~Y~~vFw~Ry~ 174 (374)
T 2y9y_A 122 GFTNWNKLEFRKFITVSGKYGRNSIQAIAR-ELAPGKTLEEVRAYAKAFWSNIE 174 (374)
T ss_dssp CCCCSCHHHHHHHHHHHHHHCTTCHHHHHS-SCCCSSSHHHHHHHHHHHHHTCS
T ss_pred hhcccCHHHHHHHHHHHHHhCHhHHHHHHH-HHccCCCHHHHHHHHHHHHHhhh
Confidence 35789999999999999999977 999999 687 9999999988875 77654
No 49
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=72.37 E-value=8.7 Score=31.57 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHhhcCCCCCCCCCCCCHH
Q psy1763 175 DDEQALYLLLQCGYNTEEALRRASMQSVPNPDTTSMWSEE 214 (365)
Q Consensus 175 D~E~AL~~L~~~~yDv~~AL~~L~~~~~p~~~e~~~WTee 214 (365)
+.+.|...|..|++|+..|+..|.... + ....|...
T Consensus 53 seeeAr~AL~~~ngDl~~AI~~Lleg~-~---~~~~W~~~ 88 (104)
T 1wj7_A 53 NQDECVIALHDCNGDVNRAINVLLEGN-P---DTHSWEMV 88 (104)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHTCS-S---SCSSCSSC
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHhCC-C---cCCceeee
Confidence 467999999999999999999997443 2 13567653
No 50
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=71.28 E-value=3.2 Score=38.91 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=40.8
Q ss_pred CCCCHHHHHhHHHHHhhhCCC------hHhhhhhccCccchhhHhhhhhc-ccccc
Q psy1763 209 SMWSEEECKNFESGLRMYGKN------FYQIHQNKVKTRNVGEIVQFYYL-WKKTE 257 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKd------F~~I~k~~lptKsv~eiV~yYY~-WKKt~ 257 (365)
..||++|-+.-.+.+.+||.. |..|++ .||.||-.+|-.+|.. -++..
T Consensus 9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk-~LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-YVPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-TSTTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCHHHHHHHHHHHHHhCcCccccccHHHHHH-HcCCCCHHHHHHHHHHHHhhhc
Confidence 579999999999999999875 999999 7999999999977764 44433
No 51
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=65.99 E-value=6 Score=28.18 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.4
Q ss_pred CChHHHHHHHHHcCCCHHHHHHHHhhc
Q psy1763 174 RDDEQALYLLLQCGYNTEEALRRASMQ 200 (365)
Q Consensus 174 rD~E~AL~~L~~~~yDv~~AL~~L~~~ 200 (365)
.|.+.|+..|..+++|++.|+..|...
T Consensus 24 ~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 24 INREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 466799999999999999999998643
No 52
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=63.66 E-value=8.1 Score=27.39 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.2
Q ss_pred CChHHHHHHHHHcCCCHHHHHHHHh
Q psy1763 174 RDDEQALYLLLQCGYNTEEALRRAS 198 (365)
Q Consensus 174 rD~E~AL~~L~~~~yDv~~AL~~L~ 198 (365)
.|.+.|+..|..+++|++.|+..|.
T Consensus 25 ~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 25 LNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3567899999999999999999985
No 53
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=63.50 E-value=8.6 Score=30.98 Aligned_cols=47 Identities=26% Similarity=0.426 Sum_probs=38.8
Q ss_pred CCCCHHHHHhHHHHHhhhCCChHhhhhhcc----CccchhhHhhhhhc-ccc
Q psy1763 209 SMWSEEECKNFESGLRMYGKNFYQIHQNKV----KTRNVGEIVQFYYL-WKK 255 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~l----ptKsv~eiV~yYY~-WKK 255 (365)
+.||.+|....-.....|+--|..|+.-+- +.||+-++...||. .++
T Consensus 31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~ 82 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999999987332 47999999977764 443
No 54
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=62.69 E-value=8.1 Score=25.18 Aligned_cols=22 Identities=14% Similarity=-0.126 Sum_probs=19.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHH
Q psy1763 176 DEQALYLLLQCGYNTEEALRRA 197 (365)
Q Consensus 176 ~E~AL~~L~~~~yDv~~AL~~L 197 (365)
.++|...|..+++|++.|+..|
T Consensus 18 ~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 18 PLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHH
Confidence 5689999999999999999876
No 55
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=61.30 E-value=8.2 Score=27.74 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=22.5
Q ss_pred CChHHHHHHHHHcCCCHHHHHHHHhhc
Q psy1763 174 RDDEQALYLLLQCGYNTEEALRRASMQ 200 (365)
Q Consensus 174 rD~E~AL~~L~~~~yDv~~AL~~L~~~ 200 (365)
.|.+.++..|..+++|++.|+..|...
T Consensus 22 ~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 22 LNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 344567999999999999999998754
No 56
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=60.88 E-value=27 Score=27.40 Aligned_cols=28 Identities=21% Similarity=0.023 Sum_probs=24.1
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHhhcCC
Q psy1763 175 DDEQALYLLLQCGYNTEEALRRASMQSV 202 (365)
Q Consensus 175 D~E~AL~~L~~~~yDv~~AL~~L~~~~~ 202 (365)
+.++|...|..++.|++.|+..|..+..
T Consensus 42 ~~~~A~~AL~~t~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 42 DTVVAEAALRVFGGNVQLAAQTLAHHGG 69 (83)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4679999999999999999999976543
No 57
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=60.83 E-value=9.3 Score=29.28 Aligned_cols=28 Identities=21% Similarity=0.016 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHhhcCC
Q psy1763 175 DDEQALYLLLQCGYNTEEALRRASMQSV 202 (365)
Q Consensus 175 D~E~AL~~L~~~~yDv~~AL~~L~~~~~ 202 (365)
+.++|...|..+++|++.|+..|.....
T Consensus 42 ~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 42 DRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 4679999999999999999999975543
No 58
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=59.82 E-value=8.7 Score=25.79 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHh
Q psy1763 175 DDEQALYLLLQCGYNTEEALRRAS 198 (365)
Q Consensus 175 D~E~AL~~L~~~~yDv~~AL~~L~ 198 (365)
+.++|...|..|++|++.|+..|.
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 17 TEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcCHHHHHHHHH
Confidence 356999999999999999999885
No 59
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=59.18 E-value=10 Score=26.35 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHcCCCHHHHHHHHh
Q psy1763 174 RDDEQALYLLLQCGYNTEEALRRAS 198 (365)
Q Consensus 174 rD~E~AL~~L~~~~yDv~~AL~~L~ 198 (365)
.|.+.++..|..+++|++.|+..|.
T Consensus 20 ~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 20 FDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3555779999999999999999884
No 60
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=58.57 E-value=12 Score=27.41 Aligned_cols=26 Identities=19% Similarity=0.098 Sum_probs=22.3
Q ss_pred CChHHHHHHHHHcCCCHHHHHHHHhh
Q psy1763 174 RDDEQALYLLLQCGYNTEEALRRASM 199 (365)
Q Consensus 174 rD~E~AL~~L~~~~yDv~~AL~~L~~ 199 (365)
.|.+.++..|..+++|++.|+..|..
T Consensus 30 ~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 30 FDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45567799999999999999999864
No 61
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=57.57 E-value=10 Score=35.93 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=36.1
Q ss_pred CCCCHHHHHhHHHHHhhhCC---ChHhhhhh-ccCccchhhHhhhhhc
Q psy1763 209 SMWSEEECKNFESGLRMYGK---NFYQIHQN-KVKTRNVGEIVQFYYL 252 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGK---dF~~I~k~-~lptKsv~eiV~yYY~ 252 (365)
..||+.|++.|.++|.+||. -+-.|..+ .|+.|+...|.+.|=.
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~ 51 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDE 51 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 46999999999999999994 46667443 5899999999887764
No 62
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=54.09 E-value=16 Score=28.01 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHcCCCHHHHHHHHhhc
Q psy1763 174 RDDEQALYLLLQCGYNTEEALRRASMQ 200 (365)
Q Consensus 174 rD~E~AL~~L~~~~yDv~~AL~~L~~~ 200 (365)
.|.+.++..|..+++|++.|+..|...
T Consensus 42 ~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 42 ANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 455678999999999999999999754
No 63
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=53.91 E-value=21 Score=28.13 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHhhhhcCCCCCCCCCCCCCChHHHHHHHHHcCCCHHHHHHHHhh
Q psy1763 145 VDLVETYLKKSHEMFINGAGDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRASM 199 (365)
Q Consensus 145 e~~ld~YL~~Ars~~~~~gl~~~p~~~~~rD~E~AL~~L~~~~yDv~~AL~~L~~ 199 (365)
...|..=|...|.+. | +.+| ..+.....++++||+++||..+..
T Consensus 31 ~arL~SCLd~iR~Vl---G-dsV~-------e~~Lv~ailk~dfD~ekALd~vL~ 74 (83)
T 1ufz_A 31 QARLYSCLDHMREVL---G-DAVP-------DDILTEAILKHKFDVQKALSVVLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHT---T-TTSC-------HHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---c-ccCC-------HHHHHHHHHHhcCCHHHHHHHHHh
Confidence 344555555555553 2 2233 357888999999999999998864
No 64
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.40 E-value=14 Score=27.31 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHhhcC
Q psy1763 175 DDEQALYLLLQCGYNTEEALRRASMQS 201 (365)
Q Consensus 175 D~E~AL~~L~~~~yDv~~AL~~L~~~~ 201 (365)
+.++|...|..|++|++.|+..|....
T Consensus 22 ~~~~a~~AL~~~~~nve~A~e~L~~~~ 48 (63)
T 1wji_A 22 SKEASRQALMDNGNNLEAALNVLLTSN 48 (63)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 456899999999999999999997654
No 65
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=53.17 E-value=16 Score=27.69 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=22.7
Q ss_pred CChHHHHHHHHHcCCCHHHHHHHHhhc
Q psy1763 174 RDDEQALYLLLQCGYNTEEALRRASMQ 200 (365)
Q Consensus 174 rD~E~AL~~L~~~~yDv~~AL~~L~~~ 200 (365)
.|.+..+..|..+++||+.|+..|...
T Consensus 32 ~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 32 VNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 454566999999999999999999754
No 66
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.06 E-value=11 Score=27.34 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=24.9
Q ss_pred CCChHHHHHHHHHcCCCHHHHHHHHhhcC
Q psy1763 173 SRDDEQALYLLLQCGYNTEEALRRASMQS 201 (365)
Q Consensus 173 ~rD~E~AL~~L~~~~yDv~~AL~~L~~~~ 201 (365)
|.|.+.-+.+|.++++|+..|+..|....
T Consensus 21 F~D~~~N~~aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 21 FCDRQLNLRLLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp CCCHHHHHHHHTTTTTCHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 46778899999999999999999987543
No 67
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=49.88 E-value=15 Score=30.20 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=23.6
Q ss_pred CChHHHHHHHHHcCCCHHHHHHHHhhc
Q psy1763 174 RDDEQALYLLLQCGYNTEEALRRASMQ 200 (365)
Q Consensus 174 rD~E~AL~~L~~~~yDv~~AL~~L~~~ 200 (365)
.|.+.++..|..+++|++.|++.|...
T Consensus 79 ~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 79 QDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 466799999999999999999999644
No 68
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=49.59 E-value=11 Score=26.41 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHhh
Q psy1763 175 DDEQALYLLLQCGYNTEEALRRASM 199 (365)
Q Consensus 175 D~E~AL~~L~~~~yDv~~AL~~L~~ 199 (365)
+.++|...|..+++|++.|+..|..
T Consensus 21 ~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 21 ERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp CHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4569999999999999999998854
No 69
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=45.62 E-value=26 Score=25.61 Aligned_cols=28 Identities=18% Similarity=0.044 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHcCCCHHHHHHHHhhcC
Q psy1763 174 RDDEQALYLLLQCGYNTEEALRRASMQS 201 (365)
Q Consensus 174 rD~E~AL~~L~~~~yDv~~AL~~L~~~~ 201 (365)
.|.+.+-..|..|++|++.|+..|....
T Consensus 23 ld~~~I~~vL~a~~gdvd~aI~~LL~m~ 50 (59)
T 1wgl_A 23 MDQEVIRSVLEAQRGNKDAAINSLLQMG 50 (59)
T ss_dssp SCHHHHHHHHTTTTTCHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHcCc
Confidence 3678899999999999999999998654
No 70
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=44.41 E-value=18 Score=27.14 Aligned_cols=27 Identities=26% Similarity=0.099 Sum_probs=23.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHhhcCC
Q psy1763 176 DEQALYLLLQCGYNTEEALRRASMQSV 202 (365)
Q Consensus 176 ~E~AL~~L~~~~yDv~~AL~~L~~~~~ 202 (365)
.++|+..|..++.|++.|+.-|-...-
T Consensus 33 ~~qA~kALKat~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 33 YECVLRAMKKKGENIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 569999999999999999998855443
No 71
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.33 E-value=31 Score=25.16 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=21.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHhhc
Q psy1763 176 DEQALYLLLQCGYNTEEALRRASMQ 200 (365)
Q Consensus 176 ~E~AL~~L~~~~yDv~~AL~~L~~~ 200 (365)
.+.|.+.|-.+++|++.|+...-..
T Consensus 30 ~~~A~~~Le~~~WnLe~Av~~ff~~ 54 (62)
T 2dal_A 30 ESVGKHMLEACNNNLEMAVTMFLDG 54 (62)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 5799999999999999999887433
No 72
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=40.39 E-value=25 Score=24.93 Aligned_cols=27 Identities=7% Similarity=-0.005 Sum_probs=23.4
Q ss_pred CChHHHHHHHHHcCCCHHHHHHHHhhc
Q psy1763 174 RDDEQALYLLLQCGYNTEEALRRASMQ 200 (365)
Q Consensus 174 rD~E~AL~~L~~~~yDv~~AL~~L~~~ 200 (365)
.+.+.+-++|-.|++|++.|+..|...
T Consensus 18 ~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 18 ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 357899999999999999999998643
No 73
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=39.60 E-value=93 Score=23.70 Aligned_cols=49 Identities=8% Similarity=0.133 Sum_probs=38.4
Q ss_pred CChHHHHHHHHHHHhhhhcCCCCCCCCCCCCCChHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q psy1763 143 VTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRASMQSVP 203 (365)
Q Consensus 143 lse~~ld~YL~~Ars~~~~~gl~~~p~~~~~rD~E~AL~~L~~~~yDv~~AL~~L~~~~~p 203 (365)
++..+++.-+...+.++...| ..++..+|..+++|++.++..|.....|
T Consensus 8 ~~~~~l~s~I~qV~DLfPdLG------------~gfi~~~L~~y~~nvE~vin~LLE~~LP 56 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPDLG------------EGFILACLEYYHYDPEQVINNILEERLA 56 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCSSC------------HHHHHHHHHHTTTCHHHHHHHHHTTCCC
T ss_pred CcHHHHHHHHHHHHHHcccCC------------HHHHHHHHHHhCCCHHHHHHHHHccCCC
Confidence 577788888888887753333 3589999999999999999999876544
No 74
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=35.95 E-value=29 Score=25.95 Aligned_cols=25 Identities=16% Similarity=0.042 Sum_probs=22.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHhhc
Q psy1763 176 DEQALYLLLQCGYNTEEALRRASMQ 200 (365)
Q Consensus 176 ~E~AL~~L~~~~yDv~~AL~~L~~~ 200 (365)
...|-..|..+++|+++|+..|+..
T Consensus 24 ~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 24 FVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4578899999999999999999865
No 75
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=35.79 E-value=28 Score=23.33 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHh
Q psy1763 175 DDEQALYLLLQCGYNTEEALRRAS 198 (365)
Q Consensus 175 D~E~AL~~L~~~~yDv~~AL~~L~ 198 (365)
+.+.|...|-.++.|++.|+...-
T Consensus 19 ~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 19 EEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 457999999999999999998763
No 76
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=35.09 E-value=24 Score=26.45 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=19.1
Q ss_pred CCCCHHHHHhHHHHHhhhCCC
Q psy1763 209 SMWSEEECKNFESGLRMYGKN 229 (365)
Q Consensus 209 ~~WTeeE~~~Fe~gl~~yGKd 229 (365)
-.||++....|.+|+.+.|-+
T Consensus 8 ~~WT~elH~~Fv~Av~~LG~~ 28 (64)
T 1irz_A 8 VLWTHELHNKFLAAVDHLGVE 28 (64)
T ss_dssp CSSCHHHHHHHHHHHHHHCTT
T ss_pred CcCCHHHHHHHHHHHHHhCCC
Confidence 569999999999999999954
No 77
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=34.45 E-value=30 Score=24.02 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHH
Q psy1763 175 DDEQALYLLLQCGYNTEEALRRA 197 (365)
Q Consensus 175 D~E~AL~~L~~~~yDv~~AL~~L 197 (365)
|.++|...|-.||.|++.|+...
T Consensus 20 d~~~A~~~Lea~nWDLe~Av~~f 42 (45)
T 3e21_A 20 NIDEAITLLEQNNWDLVAAINGV 42 (45)
T ss_dssp CHHHHHHHHHHTTTCHHHHHTTC
T ss_pred CHHHHHHHHHHcCCcHHHHHHHH
Confidence 45899999999999999998653
No 78
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.93 E-value=28 Score=25.32 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=21.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHhhc
Q psy1763 176 DEQALYLLLQCGYNTEEALRRASMQ 200 (365)
Q Consensus 176 ~E~AL~~L~~~~yDv~~AL~~L~~~ 200 (365)
.++|...|..+++|++.|+..|...
T Consensus 23 ~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 23 RDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp HHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4689999999999999999988653
No 79
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.92 E-value=39 Score=25.09 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHhh
Q psy1763 175 DDEQALYLLLQCGYNTEEALRRASM 199 (365)
Q Consensus 175 D~E~AL~~L~~~~yDv~~AL~~L~~ 199 (365)
|...|.++|-.+++|++.|+...-.
T Consensus 33 d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 33 SMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4679999999999999999998754
No 80
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.49 E-value=45 Score=25.02 Aligned_cols=26 Identities=8% Similarity=-0.028 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHcCCCHHHHHHHHhh
Q psy1763 174 RDDEQALYLLLQCGYNTEEALRRASM 199 (365)
Q Consensus 174 rD~E~AL~~L~~~~yDv~~AL~~L~~ 199 (365)
.|.+..-..|..|++|++.|+..|..
T Consensus 32 lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 32 MDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp SCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46678999999999999999999875
No 81
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=29.37 E-value=33 Score=23.71 Aligned_cols=24 Identities=13% Similarity=0.111 Sum_probs=21.1
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHh
Q psy1763 175 DDEQALYLLLQCGYNTEEALRRAS 198 (365)
Q Consensus 175 D~E~AL~~L~~~~yDv~~AL~~L~ 198 (365)
+..+|+..|..|+.|++.|...|-
T Consensus 17 ~~~~a~~Al~a~~~n~e~A~~~Lf 40 (47)
T 1dv0_A 17 PESLVIQAYFACEKNENLAANFLL 40 (47)
T ss_dssp CHHHHHHHHTTTTSCHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 346999999999999999999874
No 82
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=29.29 E-value=49 Score=24.98 Aligned_cols=26 Identities=19% Similarity=0.083 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHhhc
Q psy1763 175 DDEQALYLLLQCGYNTEEALRRASMQ 200 (365)
Q Consensus 175 D~E~AL~~L~~~~yDv~~AL~~L~~~ 200 (365)
+.++|...|..+++|++.|+..|...
T Consensus 42 ~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 42 AEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 35699999999999999999998654
No 83
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=28.61 E-value=46 Score=23.99 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=17.8
Q ss_pred HHHHHHcCCCHHHHHHHHhhc
Q psy1763 180 LYLLLQCGYNTEEALRRASMQ 200 (365)
Q Consensus 180 L~~L~~~~yDv~~AL~~L~~~ 200 (365)
-.+|...+|||.+||..|..+
T Consensus 30 t~LL~~k~gDI~~aLD~lq~~ 50 (52)
T 1q02_A 30 TRLLQTKNYDIGAALDTIQYS 50 (52)
T ss_dssp HHHHHHTTTCHHHHHHHHTTC
T ss_pred HHHHHHccCCHHHHHHHhhhc
Confidence 378889999999999998644
No 84
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.64 E-value=68 Score=21.74 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=18.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHh
Q psy1763 176 DEQALYLLLQCGYNTEEALRRAS 198 (365)
Q Consensus 176 ~E~AL~~L~~~~yDv~~AL~~L~ 198 (365)
.++|...|..++ |++.|+..|.
T Consensus 23 ~~~a~~AL~~~~-n~e~A~~~L~ 44 (47)
T 2ekk_A 23 REHAMEALLNTS-TMEQATEYLL 44 (47)
T ss_dssp HHHHHHHHHHSC-SHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CHHHHHHHHH
Confidence 468888888887 9999998875
No 85
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=27.11 E-value=81 Score=25.36 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=37.9
Q ss_pred CCCCCCCHHHHHhHHHHHhhhCC---ChHhhhhhccCccchhhHhhhhh
Q psy1763 206 DTTSMWSEEECKNFESGLRMYGK---NFYQIHQNKVKTRNVGEIVQFYY 251 (365)
Q Consensus 206 ~e~~~WTeeE~~~Fe~gl~~yGK---dF~~I~k~~lptKsv~eiV~yYY 251 (365)
+....||.++=+.......+-|- -|..|.+ .|.+|+..++-+.||
T Consensus 31 e~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~-~L~Nks~nqV~~RFq 78 (95)
T 1ug2_A 31 EKVVLWTREADRVILTMCQEQGAQPHTFSVISQ-QLGNKTPVEVSHRFR 78 (95)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHH-HHSSCCHHHHHHHHH
T ss_pred CEEEEeccccCHHHHHHHHhcCCChhHHHHHHH-HHccCCHHHHHHHHH
Confidence 44578999998888888888865 8999999 799999999986555
No 86
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=25.15 E-value=82 Score=25.41 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHHHhhhhcCCCCCCCCCCCCCChHHHHHHHHHcCCCHHHHHHHH
Q psy1763 143 VTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRA 197 (365)
Q Consensus 143 lse~~ld~YL~~Ars~~~~~gl~~~p~~~~~rD~E~AL~~L~~~~yDv~~AL~~L 197 (365)
+++++|+--+..+. . +-+.|...|-.|++|+..|+..|
T Consensus 64 i~~edi~lv~~q~~-------v----------s~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 64 IPEDDIELVMNQTG-------A----------SREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCHHHHHHHHHHHC-------C----------CHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCHHHHHHHHHHhC-------C----------CHHHHHHHHHHcCCCHHHHHHHh
Confidence 88999987776542 1 14599999999999999999875
No 87
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.47 E-value=1e+02 Score=22.26 Aligned_cols=27 Identities=19% Similarity=-0.054 Sum_probs=22.2
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHhhcC
Q psy1763 175 DDEQALYLLLQCGYNTEEALRRASMQS 201 (365)
Q Consensus 175 D~E~AL~~L~~~~yDv~~AL~~L~~~~ 201 (365)
|-+.|+..|..++.|++.|...|+...
T Consensus 22 ~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 22 SYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 456899999999999999988887543
No 88
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.16 E-value=77 Score=23.19 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=21.1
Q ss_pred hHHHHHHHHHcCC-CHHHHHHHHhh
Q psy1763 176 DEQALYLLLQCGY-NTEEALRRASM 199 (365)
Q Consensus 176 ~E~AL~~L~~~~y-Dv~~AL~~L~~ 199 (365)
.++|...|..++. |++.|+..|..
T Consensus 33 ~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 33 RARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4689999999998 99999999864
No 89
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=22.35 E-value=88 Score=22.66 Aligned_cols=25 Identities=8% Similarity=0.007 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHcCCCHHHHHHHHhh
Q psy1763 175 DDEQALYLLLQCGYNTEEALRRASM 199 (365)
Q Consensus 175 D~E~AL~~L~~~~yDv~~AL~~L~~ 199 (365)
+.+.+..+|..++.|++.|+.....
T Consensus 21 n~~~s~~cL~~~~Wd~~~A~~~F~~ 45 (59)
T 1oai_A 21 NLEWSQKCLQDNNWDYTRSAQAFTH 45 (59)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4689999999999999999987643
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=20.33 E-value=67 Score=28.12 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=30.1
Q ss_pred CCCCCHHHHHhHHHHHhhhC-CChHhhhhhccCccchhhH
Q psy1763 208 TSMWSEEECKNFESGLRMYG-KNFYQIHQNKVKTRNVGEI 246 (365)
Q Consensus 208 ~~~WTeeE~~~Fe~gl~~yG-KdF~~I~k~~lptKsv~ei 246 (365)
...||++|=.....|+.+|| -.|..|+.+ |.-.+++.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D--~~l~~~~k 171 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMD--PDLSLTHK 171 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHC--SSSSCTTT
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhC--hhcCcccc
Confidence 35799999999999999999 889999885 55555553
Done!