RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1763
(365 letters)
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone
inhibitor binding, methylation, nucleosome core,
oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB:
2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Length = 482
Score = 104 bits (258), Expect = 9e-25
Identities = 48/335 (14%), Positives = 107/335 (31%), Gaps = 28/335 (8%)
Query: 20 SPSHGNPLAPPVSDPLMLDEEIEDDDEEEEEEEKQPVSQLAKLYEEGCSTSSKETALSKA 79
+ + + + P + + + + + S +
Sbjct: 24 AAAASAAASAACASPAATAASGAAASSASAAAASAAAAPNNGQNKSLAAAAPNGNSSSNS 83
Query: 80 LEEDDDEYNFFDEHPDDDDDDPKKTIMVGSEYQAWIPE--GMCKYGDILPYENDDKLLWD 137
EE D++ + VG +YQA +P+ +N L+W
Sbjct: 84 WEEGSSG-------SSSDEEHGGGGMRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWS 136
Query: 138 PNHNLVTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRA 197
PN NL ++ Y+ + H + EQAL +L +N E++L
Sbjct: 137 PNQNLSEAK-LDEYIA-------------IAKEKHGYNMEQALGMLFWHKHNIEKSLADL 182
Query: 198 SMQSVPNPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTE 257
+ + W+ E+ FE +GK F++I Q + +++ +V+FYY WKKT
Sbjct: 183 PNFTPFPDE----WTVEDKVLFEQAFSFHGKTFHRI-QQMLPDKSIASLVKFYYSWKKTR 237
Query: 258 RHDVFANKARLEKKKYSLHPGITDYMDRFLDEQEGSINPPASPNVYLMSESSKRQRNSSL 317
++ ++K+ + + ++ + + Q
Sbjct: 238 TKTSVMDRHARKQKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKEK 297
Query: 318 GNKTTPPEETKTDKEGATSTPAAQQPANTSQSLPQ 352
+ + +G + + + + +
Sbjct: 298 HSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAAT 332
Score = 46.5 bits (108), Expect = 9e-06
Identities = 18/195 (9%), Positives = 52/195 (26%), Gaps = 1/195 (0%)
Query: 78 KALEEDDDEYNFFDEHPDDDDDDPKKTIMVGSEYQAWIPEGMCKYGDILPYENDDKLLWD 137
+ E ++ E + + ++ D + + + ++
Sbjct: 250 QKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRK 309
Query: 138 PNHNLVTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRA 197
P + + + + Q + +
Sbjct: 310 PPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGGIEP 369
Query: 198 SMQSVPNPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTE 257
+ W+ EE +R YG++F I + + ++V ++ F+ +++
Sbjct: 370 YRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAI-SDVIGNKSVVQVKNFFVNYRRRF 428
Query: 258 RHDVFANKARLEKKK 272
D + E K
Sbjct: 429 NIDEVLQEWEAEHGK 443
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure
genomics, SANT domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 63
Score = 83.7 bits (207), Expect = 9e-21
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 209 SMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKT 256
W+E+E K F GLR YGKNF++I + + + GE++ FYY WKKT
Sbjct: 10 KCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKKT 57
>2crg_A Metastasis associated protein MTA3; transcription factor, helix
turn helix, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: a.4.1.3
Length = 70
Score = 81.1 bits (200), Expect = 1e-19
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 206 DTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERH 259
WS E FE L YGK+F I Q+ + +++ I+++YY+WK T+R+
Sbjct: 6 SGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRY 59
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P;
2.06A {Homo sapiens} PDB: 1xc5_A
Length = 94
Score = 73.4 bits (180), Expect = 1e-16
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 175 DDEQALYLLLQCGYNTEEALRRASMQSVPNPDTTSMWSEEECKNFESGLRMYGKNFYQIH 234
D +Q + + ++ + V N WSE+E + F + KNF I
Sbjct: 15 DADQQRIKFINMNGLMADPMKVYKDRQVMNM-----WSEQEKETFREKFMQHPKNFGLI- 68
Query: 235 QNKVKTRNVGEIVQFYYLWKKTER 258
+ ++ + V E V +YYL KK E
Sbjct: 69 ASFLERKTVAECVLYYYLTKKNEN 92
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 61
Score = 71.3 bits (175), Expect = 3e-16
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 206 DTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTE 257
++W++ E + F+ + KNF I + ++ ++V + V +YYL KK E
Sbjct: 10 QFMNVWTDHEKEIFKDKFIQHPKNFGLI-ASYLERKSVPDCVLYYYLTKKNE 60
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural
genomics consortium, NESG, north structural genomics
consortium; NMR {Homo sapiens}
Length = 89
Score = 61.5 bits (149), Expect = 2e-12
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 208 TSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFANKAR 267
W+EEE + GL +G+N+ I + V ++ V + FY+ +KK + D + +
Sbjct: 16 FQGWTEEEMGTAKKGLLEHGRNWSAIAR-MVGSKTVSQCKNFYFNYKKRQNLDEILQQHK 74
Query: 268 LEKKK 272
L+ +K
Sbjct: 75 LKMEK 79
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding,
regulation of transcription, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Length = 72
Score = 42.1 bits (99), Expect = 1e-05
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 201 SVPNPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFY--YLWKK 255
S + + W+ EE + FE GL +G+ + +I + + +R V ++ + Y K
Sbjct: 2 SSGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISK-LIGSRTVLQVKSYARQYFKNK 57
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription
regulator complex, oxidoreductase/repressor complex,
histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens}
SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B*
2x0l_B*
Length = 235
Score = 44.8 bits (104), Expect = 1e-05
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 203 PNPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVF 262
+ W+ EE +R YG++F I + + ++V ++ F+ +++ D
Sbjct: 128 VIQKCNARWTTEEQLLAVQAIRKYGRDFQAI-SDVIGNKSVVQVKNFFVNYRRRFNIDEV 186
Query: 263 ANKARLEKKK 272
+ E K
Sbjct: 187 LQEWEAEHGK 196
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 0.001
Identities = 8/64 (12%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 38 DEEIEDDDEEEEEEEKQPVSQ----LAKLYEEGCSTSSKETALSKALEEDDDEYNFFDEH 93
+ +++ D + E++ + L + + K ++ ++ F +
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA------FYQQ 148
Query: 94 PDDD 97
PD D
Sbjct: 149 PDAD 152
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of
chromatin subfamily...; SWI/SNF complex 155 kDa subunit,
BRG1-associated factor 155; NMR {Homo sapiens}
Length = 79
Score = 35.6 bits (82), Expect = 0.002
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 197 ASMQSVPNPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFY 250
++ W+E+E L MY ++ ++ V +R E + +
Sbjct: 7 GTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKV-SEHVGSRTQDECILHF 59
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.003
Identities = 33/244 (13%), Positives = 62/244 (25%), Gaps = 74/244 (30%)
Query: 127 PYEN-----DDKLLWDPNHNLVTVD-----LVETYLKKSHEMFINGAGDCLPMGSHSRD- 175
PYEN + + + + L+ T K F++ A H
Sbjct: 242 PYENCLLVLLN--VQNAKA-WNAFNLSCKILLTTR-FKQVTDFLSAATTTHISLDHHSMT 297
Query: 176 --DEQALYLLLQCGYNTEEALRRASMQSVP------------NPDTTSMWSEEECKNFES 221
++ LLL+ + L R + + P T W C +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 222 GLRM--------YGKNFYQ---IHQNKVK-TRNVGEIVQFYYLWKKTERHDV------FA 263
+ + + + + + +W + DV
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL-----IWFDVIKSDVMVVVNKLH 412
Query: 264 NKARLEK---------------------KKYSLHPGITDYMDRFLDEQEGSINPPASPNV 302
+ +EK +Y+LH I D+ + + PP
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ- 471
Query: 303 YLMS 306
Y S
Sbjct: 472 YFYS 475
Score = 38.7 bits (89), Expect = 0.003
Identities = 52/393 (13%), Positives = 110/393 (27%), Gaps = 141/393 (35%)
Query: 34 PLMLDEEIEDDDEEEEEE----------------EKQPVSQLAKLYEEGCSTSSKETALS 77
+ D +++ D ++ ++ K VS +L+ S +E +
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF--WTLLSKQEEMVQ 80
Query: 78 KALEE-DDDEYNFFDEHPDDDDDDPKKTIMVGSEYQAWIPEGMCKYGDILPYENDDKLLW 136
K +EE Y F + P M+ Y + D L ND+++
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPS---MMTRMYI--------EQRDRL--YNDNQVF- 126
Query: 137 DPNHNLVTVDLVETYLKKS------------HEMFINGAG---------------DCLP- 168
+N+ + L+++ + G+G +
Sbjct: 127 -AKYNVSRLQPYLK-LRQALLELRPAKNVLIDGVL--GSGKTWVALDVCLSYKVQCKMDF 182
Query: 169 ------MGSHSRDDE-----QALYLLLQCGYNT---------------EEALRRASMQSV 202
+ + + + Q L + + + + LRR ++S
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSK 241
Query: 203 PNPDT----TSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTER 258
P + ++ + + F ++ + TR + F L T
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKIL-----------LTTRFKQ-VTDF--LSAATTT 287
Query: 259 HDVFANKARLEKKKYSLHPGIT-DYMDRFLD-------EQEGSINP-------------P 297
H L+ +L P + ++LD + + NP
Sbjct: 288 H------ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 298 ASPNVYLMSESSKRQR--NSSLGNKTTPPEETK 328
A+ + + K SSL P E +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSL--NVLEPAEYR 372
Score = 38.7 bits (89), Expect = 0.003
Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 30/161 (18%)
Query: 121 KYGDILP-YENDDKLLWDPNHNLVTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDDEQA 179
+Y DIL +E+ +D D+ ++ L K I S+D
Sbjct: 17 QYKDILSVFEDAFVDNFDCKD---VQDMPKSILSKEEIDHIIM----------SKDAVSG 63
Query: 180 LYLLLQCGYNTEEALRRASMQSVPNPDTTSMWS--EEECKNFESGLRMYGKNFYQIHQNK 237
L + +E + + ++ V + + S + E + RMY I Q
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY------IEQRD 117
Query: 238 VKTRNVGEIVQFYYLWKKTERHDVFANKARLEKKKYSLHPG 278
+ N ++ Y + R + +L + L P
Sbjct: 118 -RLYNDNQVFAKYNVS----RLQPY---LKLRQALLELRPA 150
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.016
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 52 EKQPVSQLA---KLYEEGCSTSSKETALSKALE 81
EKQ + +L KLY + S+ A+ +E
Sbjct: 18 EKQALKKLQASLKLYADD---SAPALAIKATME 47
Score = 28.4 bits (62), Expect = 2.1
Identities = 3/14 (21%), Positives = 9/14 (64%)
Query: 213 EEECKNFESGLRMY 226
++ K ++ L++Y
Sbjct: 19 KQALKKLQASLKLY 32
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.27
Identities = 39/234 (16%), Positives = 59/234 (25%), Gaps = 91/234 (38%)
Query: 3 LDELLAMYGYNEHNNERSPSHGNPLAPPVSDPLMLDEEIEDDDEEEEEEEKQPVSQLAKL 62
+EL +Y + L ++ L E I + E K+
Sbjct: 170 FEELRDLY-------QTYHVLVGDLIKFSAE--TLSELIRTTLDAE------------KV 208
Query: 63 YEEGCSTSSKETALSKALEEDDDEYNFFDEHPDDDDDDPKKTIMVGSEYQAWIP------ 116
+ +G + + + LE + PD D Y IP
Sbjct: 209 FTQGLN-------ILEWLENPSNT-------PDKD-------------YLLSIPISCPLI 241
Query: 117 --------EGMCKYGDILPYENDDKLLWDPNH--NLVTVDLVETYLKKSHEMFINGAGDC 166
K P E L H LVT + S E F
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE--TDSWESFFVSV--- 296
Query: 167 LPMGSHSRDDEQALYLLLQCGYNTEEALRRASM------QSVPN----PDTTSM 210
+A+ +L G EA S+ S+ N P + M
Sbjct: 297 ----------RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP--SPM 338
Score = 30.8 bits (69), Expect = 0.89
Identities = 30/221 (13%), Positives = 58/221 (26%), Gaps = 85/221 (38%)
Query: 62 LYEEGCSTSSKETALSKALEEDDDEYNFFDEHPDDDDDDPKKT---IMV----------- 107
++E K + K + E Y F + T + +
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTF--RSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 108 -----------G-S--EYQAWIPEGMCKYGDILPYENDDKLLWDPNHNLVTVDLVET--- 150
G S EY A + D++ E+ V++V
Sbjct: 1750 KGLIPADATFAGHSLGEYAA-----LASLADVMSIES-------------LVEVVFYRGM 1791
Query: 151 YLKKSHEMFINGAGD-----CLPMGSHSRDDEQALYLLLQC-----G-------YNTE-- 191
++ + G + P + ++AL +++ G YN E
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ 1851
Query: 192 --------EALRRAS-------MQSVPNPDTTSMWSEEECK 217
AL + +Q + + S EE +
Sbjct: 1852 QYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 30.6 bits (68), Expect = 0.37
Identities = 19/91 (20%), Positives = 38/91 (41%)
Query: 14 EHNNERSPSHGNPLAPPVSDPLMLDEEIEDDDEEEEEEEKQPVSQLAKLYEEGCSTSSKE 73
+H + + D ++E +DDD++E+EEE++ V+ + E + +
Sbjct: 31 QHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLREHFKNTEEG 90
Query: 74 TALSKALEEDDDEYNFFDEHPDDDDDDPKKT 104
AL EE + + P D + K+
Sbjct: 91 KALVHHYEECAERVKIQQQQPGYADLEHKED 121
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3;
transcription, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 75
Score = 28.8 bits (64), Expect = 0.57
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 211 WSEEECKNFESGLRMYGKNFYQIHQ-----NKVKTRNVGEI 246
W+ EE K E L Y + + +++ R ++
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQV 51
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 30.6 bits (70), Expect = 0.61
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 34 PLMLDEEIEDDDEEEEEEEKQPVSQLAKLYEEGCSTSSKETALSKALEEDDDEYNFFDEH 93
P+ + + EE EEE+ +E S E A+ + EE + ++
Sbjct: 210 PIYVWSSKTETVEEPMEEEEAA--------KEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 31.1 bits (69), Expect = 0.75
Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 15/140 (10%)
Query: 38 DEEIEDDDEEEEEEEKQPVSQLAKLYEEGCSTSSKETALSKALEEDDDEYNFFDEHPDDD 97
E D+DE EE+ K +L S S ++ A SK++ + + D
Sbjct: 18 TPEDRDEDEREEKRRKTTRKKLESHTVPVQSRSERKAAQSKSVIPKINSPKCPECGQHLD 77
Query: 98 DDDPKKT---IMVGSEYQAWIPEGMCKY-GDILPYENDDKL---------LWDPNHNLVT 144
D + K E Q E + Y ++ + ++ +L
Sbjct: 78 DPNLKYQQHPEDAVDEPQMLTSEKLSIYDSTSTWFDTYEDSPMHRFTSFSVYCSRGHLCP 137
Query: 145 VDLVETYLKKSHEMFINGAG 164
VD ++K+ E++ +G
Sbjct: 138 VDTGL--IEKNVELYFSGCA 155
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics,
NPPSFA; NMR {Schizosaccharomyces pombe}
Length = 58
Score = 27.8 bits (62), Expect = 0.83
Identities = 8/50 (16%), Positives = 11/50 (22%), Gaps = 1/50 (2%)
Query: 203 PNPDTTSMWSEEECKNFESGLRMYGK-NFYQIHQNKVKTRNVGEIVQFYY 251
+ W +E G N+ I R E Y
Sbjct: 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYL 53
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 30.3 bits (69), Expect = 0.86
Identities = 10/75 (13%), Positives = 19/75 (25%), Gaps = 26/75 (34%)
Query: 31 VSDPLMLDEEIEDDDEEEEEEEKQPVSQLAKLYEEGCSTSSKETALSKALEEDDDEYNFF 90
+ P+ L E +E + K +D Y+
Sbjct: 222 IQFPIYLLHENVYTEEVLADIAKD--------------------------MVNDPNYDSV 255
Query: 91 DEHPDDDDDDPKKTI 105
DD + +T+
Sbjct: 256 KVEETDDPNKKTRTV 270
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor
protein2, transcriptional activation, MYB domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 60
Score = 27.7 bits (62), Expect = 1.1
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 204 NPDTTSMWSEEECKNFESGLRMYG-KNFYQIHQNKVKTRNVGEIVQFYY 251
W+ +E + G N+ + N++ T+ E + Y
Sbjct: 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDV-ANQMCTKTKEECEKHYM 51
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin,
fusion of virus membrane with membrane, membrane fusion,
sialic acid, virion; HET: NAG BMA; 2.70A {Artificial
gene}
Length = 74
Score = 27.5 bits (61), Expect = 1.5
Identities = 6/30 (20%), Positives = 8/30 (26%)
Query: 200 QSVPNPDTTSMWSEEECKNFESGLRMYGKN 229
+ W E FE L K+
Sbjct: 12 HMASTRGSGRPWKFSENIAFEIALSFTNKD 41
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 29.7 bits (67), Expect = 1.8
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 38 DEEIEDDDEEEEEEEKQPVSQLAKLYEEGCSTSSKETALSKALEED--DDEYNFFDEHPD 95
D++ +E +EEEEK+P ++ K + +K L D +EYN F +
Sbjct: 238 DDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSIS 297
Query: 96 DDDDDPKKTIMVGSE 110
+D +DP E
Sbjct: 298 NDWEDPLYVKHFSVE 312
>1wch_A Protein tyrosine phosphatase, non-receptor type 13; hydrolase,
phosphate ION, colorectal cancer alternative splicing,
coiled coil, cytoskeleton; 1.85A {Homo sapiens} SCOP:
c.45.1.2
Length = 315
Score = 28.8 bits (65), Expect = 2.5
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 42 EDDDEEEE--EEEKQPVSQLAKLYEEGCSTSSKETALSKALEEDDDEYNFFDEHPDDDDD 99
ED D++ ++ V + K+ G T + ++ + L D+ E + +
Sbjct: 2 EDSDKDHSFLTNDELAVLPVVKVLPSGKYTGANLKSVIRVLRGLLDQGIPSKELENLQEL 61
Query: 100 DPKKTIMVGSEYQAWIPEGMCK--YGDILPYE 129
P ++G E K Y +ILPY+
Sbjct: 62 KPLDQCLIGQT-----KENRRKNRYKNILPYD 88
>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome
BC1, membrane protein, heme protein, rieske iron
protein, cytochrome B, complex III; HET: BHG HEM HEC
SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB:
1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H*
1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H*
2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...
Length = 78
Score = 27.1 bits (60), Expect = 2.5
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 44 DDEEEEEEEKQPVSQLAKLYEEGCSTSSKETALSKALEE 82
D +EEEEEE++ V L + E C K + LE
Sbjct: 2 DPKEEEEEEEELVDPLTTV-REQCEQLEKCVKARERLEL 39
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription
FA DNA-binding, nuclear protein, floral asymmetry; 1.9A
{Antirrhinum majus} SCOP: a.4.1.3
Length = 93
Score = 27.1 bits (60), Expect = 3.0
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 207 TTSMWSEEECKNFESGLRMYGK---NFYQIHQNKVKTRNVGEIVQFY 250
+ WS +E K FE L +Y K + + V+ R E+ + Y
Sbjct: 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY 53
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 27.8 bits (62), Expect = 4.5
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 31 VSDPLMLDEEIEDDDEEEEEEEKQPVSQLAKLYEEGCSTSSKETALSKALEEDDDEYNFF 90
V P + EE+E + + + E + +LEE E +
Sbjct: 171 VLPPRLTAEELEAEVQAAQVAGLVAAG------ELSEEAAEAVLEGDASLEEVKAEASED 224
Query: 91 DEHPDDDDDDPKK 103
+ D +D+ +
Sbjct: 225 NAGTDSEDNSDAQ 237
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 27.6 bits (60), Expect = 5.0
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 38 DEEIEDDDEEEEEEEKQPVSQLAKLYEEGCSTSSKETALSKALEEDDDEYNFFDEHPDDD 97
+ +++ D + E++ + K EE S++ +K D+ F + PD D
Sbjct: 110 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA--FYQQPDAD 167
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.3
Length = 73
Score = 26.0 bits (57), Expect = 5.3
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 197 ASMQSVPNPDTTSMWSEEECKNFESGLRMYGKN 229
S++ W++ + K E L+ Y +
Sbjct: 7 GSLRKERARSAEEPWTQNQQKLLELALQQYPRG 39
>2i75_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4, PTP,
tyrosine phosphatase, MEG-1, structural genomics
structural genomics consortium, SGC; 2.45A {Homo
sapiens}
Length = 320
Score = 27.3 bits (61), Expect = 8.7
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 8/88 (9%)
Query: 44 DDEEEEEEEKQPVSQLAKLYEEGCSTSSKETALSKALEEDDDEYNFFDEHPDDDDDDPKK 103
+++ E E + Q + + A L S ++ L E + P
Sbjct: 3 EEKLENEPDFQYIPEKAPLDSVHQDDHSLRESM-IQLAEGLITGTVLTQFDQLYRKKPGM 61
Query: 104 TIMVGSEYQAWIPEGMCK--YGDILPYE 129
T+ P+ + K Y DI PY+
Sbjct: 62 TMSCAKL-----PQNISKNRYRDISPYD 84
>2bzl_A Tyrosine-protein phosphatase, non-receptor type 14; PTPN14,
hydrolase; 1.65A {Homo sapiens}
Length = 325
Score = 27.3 bits (61), Expect = 9.2
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 78 KALEEDDDEYNFFDEHPDDDDDDPKKTIMVGSEYQAWIPEGMCK--YGDILPYE 129
+ L++ +E F E+ + +PE + +++PYE
Sbjct: 36 RTLKKKLEEGMVFTEYEQIPKKKANGIFSTAA-----LPENAERSRIREVVPYE 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.128 0.372
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,636,145
Number of extensions: 339717
Number of successful extensions: 1021
Number of sequences better than 10.0: 1
Number of HSP's gapped: 946
Number of HSP's successfully gapped: 62
Length of query: 365
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 270
Effective length of database: 4,049,298
Effective search space: 1093310460
Effective search space used: 1093310460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.2 bits)