RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1763
         (365 letters)



>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 57

 Score = 79.1 bits (195), Expect = 1e-19
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 211 WSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERH 259
           WS  E   FE  L  YGK+F  I Q+ +  +++  I+++YY+WK T+R+
Sbjct: 4   WSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRY 52


>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 68

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 204 NPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERH 259
           +    +MWSE+E + F      + KNF  I    ++ + V E V +YYL KK E +
Sbjct: 13  DRQVMNMWSEQEKETFREKFMQHPKNFGLIASF-LERKTVAECVLYYYLTKKNENY 67


>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 65

 Score = 44.4 bits (105), Expect = 5e-07
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 207 TTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFANKA 266
             + W+ EE       +R YG++F  I    +  ++V ++  F+  +++    D    + 
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISD-VIGNKSVVQVKNFFVNYRRRFNIDEVLQEW 62

Query: 267 RLE 269
             E
Sbjct: 63  EAE 65


>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 65

 Score = 31.8 bits (72), Expect = 0.014
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 211 WSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKK 255
           W+ EE + FE GL  +G+ + +I +  + +R V ++  +   + K
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISK-LIGSRTVLQVKSYARQYFK 48


>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum
           majus) [TaxId: 4151]}
          Length = 63

 Score = 29.9 bits (67), Expect = 0.058
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 209 SMWSEEECKNFESGLRMYGK---NFYQIHQNKVKTRNVGEIVQFYY 251
             WS +E K FE  L +Y K   + +      V+ R   E+ + Y 
Sbjct: 2   RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE 47


>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L,
           isoform b {Human (Homo sapiens) [TaxId: 9606]}
          Length = 47

 Score = 25.3 bits (55), Expect = 1.9
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 211 WSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYY 251
           W+ +E       +   G   +Q   N++ T+   E  + Y 
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44


>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}
          Length = 524

 Score = 27.2 bits (59), Expect = 3.2
 Identities = 10/47 (21%), Positives = 19/47 (40%)

Query: 39  EEIEDDDEEEEEEEKQPVSQLAKLYEEGCSTSSKETALSKALEEDDD 85
             ++D D  + +   +P    A+   E     S+  AL + L   D+
Sbjct: 463 SWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDE 509


>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome
           remodeling ATPase ISWI {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 52

 Score = 24.2 bits (53), Expect = 5.8
 Identities = 7/46 (15%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 211 WSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFY-YLWKK 255
           W++ +   F      YG++        V+ +   E++++    W++
Sbjct: 2   WTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 47


>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus
           fulgidus [TaxId: 2234]}
          Length = 162

 Score = 25.3 bits (55), Expect = 8.1
 Identities = 7/90 (7%), Positives = 24/90 (26%), Gaps = 8/90 (8%)

Query: 210 MWSEEECKNFESGLRM-----YGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFAN 264
           +  +EE  +                 Y + +   +  +     +  Y  +      +   
Sbjct: 45  VQWQEELMHAMKMFDFVSERGGRVKLYAVEEPPSEWDSPLAAFEHVYEHEVNVTKRIHEL 104

Query: 265 KARLEKKKYSLHPGITDYMDRFLDEQEGSI 294
                ++K        +++  ++ EQ    
Sbjct: 105 VEMAMQEK---DFATYNFLQWYVAEQVEEE 131


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.128    0.372 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,389,942
Number of extensions: 67577
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 24
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.2 bits)