Query psy17630
Match_columns 372
No_of_seqs 477 out of 1720
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 18:58:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569|consensus 100.0 5.7E-34 1.2E-38 262.2 28.9 299 4-341 163-472 (485)
2 KOG0254|consensus 100.0 9.1E-26 2E-30 216.5 28.6 303 3-342 188-502 (513)
3 TIGR00887 2A0109 phosphate:H+ 99.9 2.3E-25 4.9E-30 213.6 23.4 271 16-335 203-500 (502)
4 PF00083 Sugar_tr: Sugar (and 99.9 6.2E-30 1.4E-34 242.3 -15.6 294 3-337 148-450 (451)
5 PRK10077 xylE D-xylose transpo 99.9 2.8E-23 6E-28 198.4 29.4 277 16-341 193-475 (479)
6 TIGR01299 synapt_SV2 synaptic 99.9 1.7E-23 3.7E-28 204.8 25.3 263 16-330 333-740 (742)
7 KOG0253|consensus 99.9 7.7E-23 1.7E-27 177.1 20.7 278 2-331 209-527 (528)
8 TIGR00879 SP MFS transporter, 99.9 1.8E-21 3.8E-26 185.4 28.4 292 3-331 173-478 (481)
9 TIGR00898 2A0119 cation transp 99.9 6.3E-22 1.4E-26 190.3 21.9 273 3-332 226-503 (505)
10 PRK10642 proline/glycine betai 99.8 1.2E-19 2.6E-24 173.5 21.0 244 16-330 191-436 (490)
11 KOG0252|consensus 99.8 3.7E-21 8.1E-26 171.6 9.5 273 16-338 224-512 (538)
12 KOG0255|consensus 99.8 2.9E-17 6.2E-22 158.5 25.0 281 5-339 219-508 (521)
13 COG2271 UhpC Sugar phosphate p 99.8 1.5E-17 3.2E-22 147.9 15.4 247 16-323 184-434 (448)
14 PRK11663 regulatory protein Uh 99.7 8.4E-17 1.8E-21 151.7 16.6 165 120-326 259-427 (434)
15 PRK09952 shikimate transporter 99.7 4E-16 8.6E-21 147.2 20.4 167 120-327 266-436 (438)
16 PRK12307 putative sialic acid 99.7 8.5E-16 1.8E-20 144.6 21.0 155 91-259 220-375 (426)
17 PRK11273 glpT sn-glycerol-3-ph 99.7 8.7E-16 1.9E-20 145.5 21.1 241 16-320 186-432 (452)
18 PRK03893 putative sialic acid 99.7 1.3E-15 2.7E-20 146.3 21.8 148 123-312 294-442 (496)
19 PRK11551 putative 3-hydroxyphe 99.7 8.1E-16 1.8E-20 143.8 19.1 127 120-259 236-362 (406)
20 TIGR00893 2A0114 d-galactonate 99.7 5.9E-16 1.3E-20 143.5 17.5 260 3-320 128-396 (399)
21 PRK09556 uhpT sugar phosphate 99.7 7E-16 1.5E-20 146.8 18.2 159 120-320 274-446 (467)
22 TIGR00890 2A0111 Oxalate/Forma 99.7 1E-15 2.3E-20 141.1 18.6 221 16-316 155-375 (377)
23 PRK10489 enterobactin exporter 99.7 9.8E-16 2.1E-20 143.8 18.7 169 122-334 241-410 (417)
24 TIGR00903 2A0129 major facilit 99.7 2.2E-15 4.9E-20 138.4 18.6 228 4-320 125-362 (368)
25 TIGR00712 glpT glycerol-3-phos 99.7 9.3E-16 2E-20 144.8 15.5 251 16-327 184-437 (438)
26 PRK10406 alpha-ketoglutarate t 99.7 7.5E-15 1.6E-19 138.4 20.4 193 16-259 197-391 (432)
27 TIGR00891 2A0112 putative sial 99.7 1.6E-14 3.4E-19 134.8 21.5 141 122-305 256-398 (405)
28 TIGR00899 2A0120 sugar efflux 99.7 7.8E-15 1.7E-19 135.5 19.2 229 4-320 136-371 (375)
29 TIGR00889 2A0110 nucleoside tr 99.7 5.8E-15 1.3E-19 138.3 18.5 193 92-329 201-408 (418)
30 PRK09528 lacY galactoside perm 99.7 3.6E-15 7.9E-20 140.0 16.8 147 135-325 258-405 (420)
31 TIGR02332 HpaX 4-hydroxyphenyl 99.7 2.8E-15 6.1E-20 140.3 15.7 236 16-311 167-409 (412)
32 PRK15011 sugar efflux transpor 99.7 6.5E-15 1.4E-19 137.1 18.0 158 122-325 234-392 (393)
33 PRK03545 putative arabinose tr 99.6 1.8E-14 4E-19 133.9 20.7 218 16-323 162-380 (390)
34 COG2814 AraJ Arabinose efflux 99.6 2E-14 4.3E-19 129.5 19.7 229 4-320 152-383 (394)
35 PRK15075 citrate-proton sympor 99.6 1.3E-14 2.9E-19 136.8 19.4 132 119-259 253-386 (434)
36 TIGR00895 2A0115 benzoate tran 99.6 7E-15 1.5E-19 136.7 17.1 235 4-259 152-392 (398)
37 TIGR02332 HpaX 4-hydroxyphenyl 99.6 9.2E-15 2E-19 136.8 17.8 181 104-328 8-194 (412)
38 COG2271 UhpC Sugar phosphate p 99.6 8.3E-16 1.8E-20 136.9 9.7 182 101-326 26-209 (448)
39 TIGR01299 synapt_SV2 synaptic 99.6 2.1E-14 4.5E-19 141.3 19.2 144 103-259 166-309 (742)
40 TIGR00895 2A0115 benzoate tran 99.6 4.9E-15 1.1E-19 137.7 14.0 171 113-327 26-196 (398)
41 PRK09705 cynX putative cyanate 99.6 3.3E-14 7.1E-19 132.3 19.3 166 120-330 221-388 (393)
42 PRK11663 regulatory protein Uh 99.6 9.6E-15 2.1E-19 137.7 14.8 163 120-326 39-201 (434)
43 TIGR00892 2A0113 monocarboxyla 99.6 6.9E-15 1.5E-19 139.4 13.4 154 121-318 258-416 (455)
44 TIGR00893 2A0114 d-galactonate 99.6 1.4E-14 3.1E-19 134.2 14.8 164 121-328 11-174 (399)
45 PRK03545 putative arabinose tr 99.6 2.5E-14 5.3E-19 133.1 15.4 161 122-326 27-187 (390)
46 KOG2533|consensus 99.6 1.3E-14 2.8E-19 136.2 13.1 142 16-179 205-353 (495)
47 TIGR00883 2A0106 metabolite-pr 99.6 9.3E-14 2E-18 128.9 18.6 151 120-310 235-388 (394)
48 PRK11010 ampG muropeptide tran 99.6 1.1E-13 2.3E-18 132.4 19.2 189 91-325 214-404 (491)
49 PRK10213 nepI ribonucleoside t 99.6 6.9E-14 1.5E-18 130.1 16.1 161 122-326 38-198 (394)
50 TIGR00894 2A0114euk Na(+)-depe 99.6 8.9E-14 1.9E-18 132.4 17.2 243 16-320 197-447 (465)
51 TIGR00710 efflux_Bcr_CflA drug 99.6 4.8E-14 1E-18 130.7 14.8 166 119-328 20-185 (385)
52 KOG2532|consensus 99.6 8.6E-14 1.9E-18 130.3 16.2 237 16-322 194-446 (466)
53 PRK11551 putative 3-hydroxyphe 99.6 3.7E-14 8.1E-19 132.6 13.7 164 120-327 31-194 (406)
54 TIGR00891 2A0112 putative sial 99.6 1.1E-13 2.5E-18 128.9 17.0 178 105-327 13-192 (405)
55 PRK05122 major facilitator sup 99.6 4.2E-13 9.2E-18 125.2 20.4 153 122-320 234-386 (399)
56 PLN00028 nitrate transmembrane 99.6 5.6E-14 1.2E-18 133.9 14.7 153 122-320 270-430 (476)
57 PRK09874 drug efflux system pr 99.6 1.3E-13 2.7E-18 129.0 16.4 154 124-321 239-396 (408)
58 TIGR00902 2A0127 phenyl propri 99.6 2.6E-13 5.5E-18 125.9 18.1 177 91-318 197-374 (382)
59 COG2814 AraJ Arabinose efflux 99.6 1.1E-13 2.5E-18 124.6 15.0 161 120-324 29-189 (394)
60 PRK11273 glpT sn-glycerol-3-ph 99.6 8.4E-14 1.8E-18 132.0 14.9 165 123-327 48-212 (452)
61 TIGR00882 2A0105 oligosacchari 99.6 2.1E-13 4.6E-18 127.0 17.4 240 3-320 143-392 (396)
62 TIGR00881 2A0104 phosphoglycer 99.5 7.4E-14 1.6E-18 128.9 14.2 230 16-305 149-379 (379)
63 TIGR00881 2A0104 phosphoglycer 99.5 3.3E-14 7.3E-19 131.1 11.1 165 120-327 11-175 (379)
64 PRK14995 methyl viologen resis 99.5 1.4E-13 3.1E-18 131.9 15.7 178 106-327 8-186 (495)
65 PRK10473 multidrug efflux syst 99.5 7E-14 1.5E-18 130.1 13.1 177 108-328 7-183 (392)
66 TIGR00711 efflux_EmrB drug res 99.5 5.7E-14 1.2E-18 134.4 12.8 172 112-327 10-181 (485)
67 PRK10091 MFS transport protein 99.5 1.3E-13 2.8E-18 127.8 14.1 164 120-327 19-182 (382)
68 TIGR02718 sider_RhtX_FptX side 99.5 6.2E-13 1.3E-17 123.7 18.6 185 91-318 200-386 (390)
69 PRK10091 MFS transport protein 99.5 5.8E-13 1.3E-17 123.5 18.2 152 125-320 220-373 (382)
70 PRK12307 putative sialic acid 99.5 1.9E-13 4E-18 128.7 15.1 158 108-309 22-179 (426)
71 PRK10054 putative transporter; 99.5 2.5E-13 5.5E-18 126.4 15.8 164 119-327 22-186 (395)
72 PRK15402 multidrug efflux syst 99.5 1E-12 2.2E-17 122.9 19.9 196 16-259 166-362 (406)
73 PLN00028 nitrate transmembrane 99.5 3E-13 6.5E-18 128.9 16.1 159 120-323 52-219 (476)
74 TIGR00897 2A0118 polyol permea 99.5 1.8E-12 4E-17 121.0 21.0 183 92-320 215-398 (402)
75 TIGR00903 2A0129 major facilit 99.5 1.6E-13 3.5E-18 126.2 13.4 163 121-328 8-170 (368)
76 PRK15403 multidrug efflux syst 99.5 2.4E-13 5.2E-18 127.3 14.8 165 120-328 32-196 (413)
77 PRK12382 putative transporter; 99.5 1.7E-12 3.7E-17 120.8 20.2 155 122-322 234-388 (392)
78 PRK10504 putative transporter; 99.5 7.6E-13 1.6E-17 126.3 18.0 151 94-259 256-407 (471)
79 KOG1330|consensus 99.5 2.7E-14 5.7E-19 128.6 7.2 174 112-329 41-215 (493)
80 TIGR00712 glpT glycerol-3-phos 99.5 2.6E-13 5.6E-18 128.2 14.2 163 123-326 46-209 (438)
81 PRK15402 multidrug efflux syst 99.5 5.7E-13 1.2E-17 124.6 15.7 165 120-328 29-193 (406)
82 PRK10504 putative transporter; 99.5 5.7E-13 1.2E-17 127.1 15.9 166 117-326 23-188 (471)
83 PRK09874 drug efflux system pr 99.5 1.1E-12 2.4E-17 122.7 17.5 163 119-326 29-196 (408)
84 PF07690 MFS_1: Major Facilita 99.5 2.8E-13 6.2E-18 123.8 13.2 163 120-326 12-175 (352)
85 TIGR00710 efflux_Bcr_CflA drug 99.5 1.3E-12 2.9E-17 121.0 17.7 195 16-259 158-353 (385)
86 TIGR00792 gph sugar (Glycoside 99.5 4.4E-13 9.5E-18 126.6 14.7 193 16-259 172-372 (437)
87 TIGR00900 2A0121 H+ Antiporter 99.5 2.1E-12 4.6E-17 118.6 18.3 123 125-259 232-355 (365)
88 PRK10213 nepI ribonucleoside t 99.5 5.2E-12 1.1E-16 117.5 20.5 149 125-318 238-386 (394)
89 PRK10077 xylE D-xylose transpo 99.5 1.1E-12 2.3E-17 125.5 16.1 168 135-327 51-218 (479)
90 PRK11128 putative 3-phenylprop 99.5 2.7E-12 5.8E-17 119.1 18.1 175 91-316 197-372 (382)
91 PRK11902 ampG muropeptide tran 99.5 2.2E-12 4.8E-17 120.5 17.6 182 91-320 201-387 (402)
92 PRK11652 emrD multidrug resist 99.5 1.2E-12 2.7E-17 121.8 15.7 164 121-328 25-188 (394)
93 TIGR00900 2A0121 H+ Antiporter 99.5 9.4E-13 2E-17 120.9 14.7 162 120-320 15-176 (365)
94 cd06174 MFS The Major Facilita 99.5 4.3E-12 9.4E-17 115.7 19.0 157 120-320 191-349 (352)
95 TIGR00887 2A0109 phosphate:H+ 99.5 2.5E-12 5.4E-17 123.6 18.1 116 137-259 54-169 (502)
96 PRK14995 methyl viologen resis 99.5 1.6E-12 3.4E-17 124.7 16.5 130 120-259 275-405 (495)
97 PRK03699 putative transporter; 99.5 1.5E-12 3.2E-17 121.3 15.9 156 120-319 23-179 (394)
98 COG2223 NarK Nitrate/nitrite t 99.5 3.5E-12 7.5E-17 114.1 17.0 227 16-321 171-399 (417)
99 PRK10489 enterobactin exporter 99.5 1.8E-12 4E-17 121.6 16.1 167 120-326 33-199 (417)
100 PRK09556 uhpT sugar phosphate 99.5 4.8E-13 1E-17 127.4 11.8 166 121-325 46-214 (467)
101 TIGR00894 2A0114euk Na(+)-depe 99.5 6.6E-13 1.4E-17 126.4 12.8 152 133-326 70-222 (465)
102 PRK03699 putative transporter; 99.5 1.5E-12 3.3E-17 121.2 14.9 156 120-320 221-377 (394)
103 TIGR00886 2A0108 nitrite extru 99.5 2.1E-12 4.5E-17 118.9 15.7 127 120-259 17-144 (366)
104 PRK15034 nitrate/nitrite trans 99.5 8.5E-12 1.8E-16 116.3 19.5 189 91-323 244-454 (462)
105 PRK11102 bicyclomycin/multidru 99.5 7E-13 1.5E-17 122.7 12.3 163 121-327 8-170 (377)
106 TIGR00711 efflux_EmrB drug res 99.4 4.1E-12 8.9E-17 121.6 18.0 153 93-259 249-402 (485)
107 TIGR00892 2A0113 monocarboxyla 99.4 1.3E-12 2.9E-17 123.8 14.3 159 121-324 36-195 (455)
108 TIGR00890 2A0111 Oxalate/Forma 99.4 2E-13 4.4E-18 125.8 8.4 161 120-325 19-179 (377)
109 PRK03633 putative MFS family t 99.4 1.5E-11 3.2E-16 114.1 20.7 151 122-319 218-368 (381)
110 PRK03893 putative sialic acid 99.4 1.7E-12 3.6E-17 124.7 14.6 162 105-310 21-182 (496)
111 PRK11102 bicyclomycin/multidru 99.4 4.9E-12 1.1E-16 117.0 17.0 200 4-251 126-332 (377)
112 PRK11043 putative transporter; 99.4 4.1E-12 8.9E-17 118.6 16.1 156 121-320 23-178 (401)
113 PRK15462 dipeptide/tripeptide 99.4 3.8E-12 8.2E-17 119.9 15.8 155 120-317 25-183 (493)
114 PRK11043 putative transporter; 99.4 1.6E-11 3.5E-16 114.6 19.7 155 91-259 195-349 (401)
115 PRK10642 proline/glycine betai 99.4 1.1E-11 2.3E-16 118.8 18.1 187 111-327 23-216 (490)
116 PRK10473 multidrug efflux syst 99.4 6.4E-12 1.4E-16 116.9 16.1 132 16-188 156-288 (392)
117 TIGR00879 SP MFS transporter, 99.4 1.3E-12 2.8E-17 124.3 11.8 163 123-327 47-220 (481)
118 PRK11646 multidrug resistance 99.4 7.1E-12 1.5E-16 116.9 15.6 161 121-326 27-188 (400)
119 PF11700 ATG22: Vacuole efflux 99.4 3.3E-11 7.1E-16 113.7 19.7 174 118-328 295-472 (477)
120 PRK05122 major facilitator sup 99.4 8.7E-12 1.9E-16 116.3 15.4 161 120-316 31-192 (399)
121 PRK10207 dipeptide/tripeptide 99.4 1E-11 2.2E-16 118.4 15.7 164 103-310 14-181 (489)
122 PRK15034 nitrate/nitrite trans 99.4 2.4E-11 5.3E-16 113.3 17.6 147 104-259 34-181 (462)
123 PRK10406 alpha-ketoglutarate t 99.4 1.4E-11 3.1E-16 116.1 16.1 186 113-327 31-222 (432)
124 TIGR00924 yjdL_sub1_fam amino 99.4 9.6E-12 2.1E-16 118.4 14.8 155 119-317 25-186 (475)
125 TIGR01272 gluP glucose/galacto 99.4 4.1E-11 8.8E-16 107.6 17.7 142 121-309 157-301 (310)
126 PRK12382 putative transporter; 99.4 1E-11 2.2E-16 115.6 14.3 156 120-311 31-187 (392)
127 cd06174 MFS The Major Facilita 99.4 1.2E-11 2.5E-16 112.8 14.3 156 120-319 15-170 (352)
128 TIGR00901 2A0125 AmpG-related 99.4 1.1E-11 2.5E-16 113.7 14.2 130 120-251 225-355 (356)
129 PRK11646 multidrug resistance 99.4 4.8E-11 1E-15 111.3 18.3 123 124-259 228-351 (400)
130 TIGR00897 2A0118 polyol permea 99.4 1.6E-11 3.4E-16 114.7 14.7 130 121-259 30-160 (402)
131 PRK10054 putative transporter; 99.3 1.4E-11 3.1E-16 114.7 13.9 142 135-320 240-381 (395)
132 PF07690 MFS_1: Major Facilita 99.3 3.2E-12 6.9E-17 116.8 9.4 212 4-258 132-352 (352)
133 PRK09705 cynX putative cyanate 99.3 1.8E-11 4E-16 113.9 14.4 150 121-315 26-176 (393)
134 COG2223 NarK Nitrate/nitrite t 99.3 3.6E-11 7.8E-16 107.7 14.9 163 120-325 30-195 (417)
135 TIGR00885 fucP L-fucose:H+ sym 99.3 2.2E-11 4.8E-16 113.8 14.4 130 120-259 19-148 (410)
136 PF06609 TRI12: Fungal trichot 99.3 8.3E-12 1.8E-16 119.0 11.4 153 124-322 64-216 (599)
137 PF01306 LacY_symp: LacY proto 99.3 9.1E-12 2E-16 113.5 11.2 187 91-326 212-403 (412)
138 PRK08633 2-acyl-glycerophospho 99.3 4.1E-11 8.9E-16 126.6 17.8 124 123-259 251-376 (1146)
139 PRK11195 lysophospholipid tran 99.3 2.5E-10 5.5E-15 106.2 20.9 122 124-259 225-348 (393)
140 TIGR00898 2A0119 cation transp 99.3 5.7E-12 1.2E-16 121.3 9.6 154 126-327 111-267 (505)
141 TIGR00896 CynX cyanate transpo 99.3 9.8E-11 2.1E-15 107.5 17.0 126 120-259 213-340 (355)
142 PRK10429 melibiose:sodium symp 99.3 4.8E-11 1E-15 113.8 15.1 127 125-259 252-385 (473)
143 PRK15075 citrate-proton sympor 99.3 9.2E-11 2E-15 110.7 16.8 150 105-259 16-171 (434)
144 PF03825 Nuc_H_symport: Nucleo 99.3 1.9E-10 4.1E-15 106.5 18.2 188 91-326 199-398 (400)
145 PRK11195 lysophospholipid tran 99.3 6.1E-11 1.3E-15 110.4 15.0 120 124-259 23-142 (393)
146 PRK09952 shikimate transporter 99.3 9.9E-11 2.1E-15 110.6 16.6 149 105-259 23-179 (438)
147 TIGR00899 2A0120 sugar efflux 99.3 5.3E-11 1.2E-15 109.9 14.2 164 120-327 13-180 (375)
148 PRK09584 tppB putative tripept 99.3 1.1E-10 2.4E-15 111.8 16.6 153 120-315 37-193 (500)
149 TIGR00880 2_A_01_02 Multidrug 99.3 1.3E-11 2.9E-16 96.7 8.5 137 146-326 5-141 (141)
150 PRK09848 glucuronide transport 99.3 8E-11 1.7E-15 111.6 15.1 153 91-259 220-380 (448)
151 TIGR00806 rfc RFC reduced fola 99.3 1.4E-10 3E-15 106.8 15.9 141 103-259 27-168 (511)
152 PTZ00207 hypothetical protein; 99.3 1.4E-10 3E-15 111.3 16.6 164 120-324 43-206 (591)
153 PRK15403 multidrug efflux syst 99.3 8.4E-10 1.8E-14 103.4 20.3 207 5-259 152-365 (413)
154 TIGR00805 oat sodium-independe 99.3 1.1E-10 2.4E-15 114.5 14.6 154 105-259 34-226 (633)
155 PRK09528 lacY galactoside perm 99.3 2.8E-10 6.1E-15 106.9 16.9 164 121-325 27-193 (420)
156 PRK11652 emrD multidrug resist 99.2 6.1E-10 1.3E-14 103.7 18.8 191 16-259 161-352 (394)
157 PRK10133 L-fucose transporter; 99.2 2.7E-10 5.9E-15 107.4 16.2 130 120-259 42-171 (438)
158 PRK06814 acylglycerophosphoeth 99.2 2.1E-10 4.5E-15 121.1 17.1 163 91-259 217-388 (1140)
159 KOG2615|consensus 99.2 3.5E-11 7.6E-16 105.9 9.1 109 137-259 66-174 (451)
160 TIGR00886 2A0108 nitrite extru 99.2 1.1E-10 2.4E-15 107.5 12.8 123 121-253 242-365 (366)
161 PRK03633 putative MFS family t 99.2 2.3E-10 4.9E-15 106.2 14.9 129 118-259 20-148 (381)
162 PF05977 MFS_3: Transmembrane 99.2 4.8E-10 1E-14 107.1 17.1 153 123-319 237-390 (524)
163 PRK10133 L-fucose transporter; 99.2 5E-10 1.1E-14 105.6 17.0 173 92-316 251-426 (438)
164 COG2270 Permeases of the major 99.2 1.2E-09 2.5E-14 98.2 18.1 188 91-328 244-433 (438)
165 KOG2504|consensus 99.2 4.7E-11 1E-15 113.4 9.6 182 93-324 292-476 (509)
166 KOG2532|consensus 99.2 1.2E-10 2.6E-15 109.3 12.1 150 134-325 68-218 (466)
167 KOG0569|consensus 99.2 1E-10 2.3E-15 108.8 11.4 145 143-328 64-209 (485)
168 TIGR01301 GPH_sucrose GPH fami 99.2 5.8E-10 1.2E-14 104.8 15.8 200 105-328 6-223 (477)
169 PRK15011 sugar efflux transpor 99.2 4.5E-10 9.7E-15 104.6 15.0 162 121-327 32-198 (393)
170 PRK09669 putative symporter Ya 99.2 4.8E-10 1E-14 106.1 15.0 107 142-259 267-380 (444)
171 TIGR00901 2A0125 AmpG-related 99.2 2.5E-10 5.4E-15 104.8 12.7 163 122-327 6-182 (356)
172 PF13347 MFS_2: MFS/sugar tran 99.2 2.2E-09 4.8E-14 101.1 19.3 193 16-259 176-376 (428)
173 PRK11902 ampG muropeptide tran 99.2 4.9E-10 1.1E-14 104.7 14.5 168 116-327 11-185 (402)
174 COG2211 MelB Na+/melibiose sym 99.2 1.8E-09 3.9E-14 99.7 17.6 153 91-259 228-388 (467)
175 TIGR01301 GPH_sucrose GPH fami 99.2 2.2E-09 4.7E-14 101.0 17.9 153 144-328 310-476 (477)
176 KOG0255|consensus 99.2 2.9E-10 6.2E-15 109.9 12.5 146 134-327 113-258 (521)
177 PRK11462 putative transporter; 99.2 1.9E-09 4.1E-14 102.3 17.3 108 141-259 265-379 (460)
178 PRK11010 ampG muropeptide tran 99.1 1.2E-09 2.6E-14 104.6 15.4 164 120-327 28-198 (491)
179 TIGR00896 CynX cyanate transpo 99.1 3.5E-10 7.6E-15 103.8 10.9 124 121-259 17-140 (355)
180 KOG3764|consensus 99.1 2.2E-10 4.7E-15 101.6 7.7 152 134-329 101-253 (464)
181 KOG0254|consensus 99.1 6.4E-10 1.4E-14 107.1 11.5 141 141-327 91-233 (513)
182 KOG2533|consensus 99.1 1.2E-09 2.6E-14 102.9 12.8 153 132-328 74-232 (495)
183 COG2807 CynX Cyanate permease 99.1 5.5E-09 1.2E-13 92.0 15.8 179 92-320 201-382 (395)
184 TIGR00885 fucP L-fucose:H+ sym 99.1 6.7E-09 1.5E-13 97.1 17.7 147 92-259 225-373 (410)
185 PRK06814 acylglycerophosphoeth 99.1 3.2E-09 7E-14 112.2 16.7 145 140-326 53-197 (1140)
186 KOG2504|consensus 99.1 1.9E-09 4.2E-14 102.4 13.5 179 101-324 43-222 (509)
187 TIGR00788 fbt folate/biopterin 99.1 9.3E-10 2E-14 104.6 11.3 125 132-259 281-405 (468)
188 PF00083 Sugar_tr: Sugar (and 99.1 5.4E-12 1.2E-16 119.7 -4.2 148 141-327 48-195 (451)
189 TIGR00883 2A0106 metabolite-pr 99.1 4E-09 8.7E-14 97.7 15.0 105 150-259 46-150 (394)
190 TIGR00882 2A0105 oligosacchari 99.1 1.8E-09 3.9E-14 100.6 12.6 167 120-325 18-185 (396)
191 KOG1330|consensus 99.1 8.5E-10 1.8E-14 99.9 9.7 216 4-254 168-398 (493)
192 PRK08633 2-acyl-glycerophospho 99.1 5.2E-09 1.1E-13 110.8 17.2 109 141-259 49-157 (1146)
193 PF05977 MFS_3: Transmembrane 99.0 3E-09 6.5E-14 101.6 13.5 153 127-318 33-185 (524)
194 PF06609 TRI12: Fungal trichot 99.0 6.5E-08 1.4E-12 92.7 22.3 111 140-261 350-461 (599)
195 TIGR00792 gph sugar (Glycoside 99.0 5E-09 1.1E-13 98.9 11.4 167 123-327 18-198 (437)
196 KOG0252|consensus 99.0 1.8E-08 4E-13 91.2 13.9 106 136-247 81-186 (538)
197 TIGR00902 2A0127 phenyl propri 98.9 9E-09 1.9E-13 95.5 12.4 147 120-311 20-167 (382)
198 PRK11128 putative 3-phenylprop 98.9 1.2E-08 2.6E-13 94.6 13.0 161 120-326 20-181 (382)
199 KOG2563|consensus 98.9 5E-08 1.1E-12 88.4 16.0 157 89-259 256-413 (480)
200 TIGR02718 sider_RhtX_FptX side 98.9 2.3E-08 5E-13 93.0 12.9 175 111-325 8-186 (390)
201 COG0738 FucP Fucose permease [ 98.9 7.7E-08 1.7E-12 86.1 14.9 174 91-316 228-402 (422)
202 KOG0253|consensus 98.9 1.3E-08 2.7E-13 89.7 9.6 158 124-328 98-255 (528)
203 COG3104 PTR2 Dipeptide/tripept 98.9 5.9E-09 1.3E-13 95.7 7.9 144 135-320 57-203 (498)
204 PF06813 Nodulin-like: Nodulin 98.8 2.7E-08 5.8E-13 85.2 9.7 132 119-259 17-149 (250)
205 KOG3762|consensus 98.7 7.5E-08 1.6E-12 88.9 10.3 157 120-320 387-544 (618)
206 COG0738 FucP Fucose permease [ 98.7 3.7E-07 8.1E-12 81.8 14.1 129 121-259 30-158 (422)
207 TIGR00924 yjdL_sub1_fam amino 98.7 4.2E-06 9.1E-11 79.9 21.5 147 141-322 314-467 (475)
208 PRK09669 putative symporter Ya 98.7 9.7E-08 2.1E-12 90.5 10.3 166 123-326 28-207 (444)
209 KOG4686|consensus 98.7 3.5E-07 7.6E-12 77.9 12.0 124 121-259 281-406 (459)
210 PF05631 DUF791: Protein of un 98.7 6.2E-07 1.3E-11 79.7 13.6 157 129-329 59-222 (354)
211 KOG2816|consensus 98.6 7.8E-07 1.7E-11 83.5 14.6 137 148-331 71-207 (463)
212 PTZ00207 hypothetical protein; 98.6 3.2E-06 6.9E-11 81.7 18.9 163 121-327 370-556 (591)
213 PRK10207 dipeptide/tripeptide 98.6 2.9E-06 6.3E-11 81.2 18.0 115 142-259 312-433 (489)
214 PRK10429 melibiose:sodium symp 98.6 2.8E-07 6E-12 88.0 11.0 132 121-259 23-161 (473)
215 KOG3764|consensus 98.6 8.1E-08 1.7E-12 85.6 5.7 235 2-320 205-451 (464)
216 PF13347 MFS_2: MFS/sugar tran 98.5 2.6E-07 5.6E-12 87.1 8.1 164 126-325 24-200 (428)
217 PRK11462 putative transporter; 98.5 1.4E-06 3E-11 82.9 12.4 131 122-259 27-164 (460)
218 PRK09584 tppB putative tripept 98.5 2.5E-06 5.4E-11 81.9 13.5 115 141-259 318-436 (500)
219 TIGR00889 2A0110 nucleoside tr 98.4 4.6E-06 1E-10 78.3 14.1 65 122-186 20-86 (418)
220 KOG3626|consensus 98.4 1.2E-05 2.7E-10 78.1 16.8 92 89-185 382-477 (735)
221 KOG2325|consensus 98.4 6.5E-07 1.4E-11 83.3 7.8 121 130-259 60-183 (488)
222 TIGR00788 fbt folate/biopterin 98.4 2.4E-06 5.2E-11 81.4 11.3 167 114-327 36-212 (468)
223 COG2807 CynX Cyanate permease 98.4 4.7E-06 1E-10 73.8 11.8 152 121-318 29-181 (395)
224 KOG2615|consensus 98.3 1.4E-05 3E-10 71.2 12.2 115 132-259 290-406 (451)
225 PF01306 LacY_symp: LacY proto 98.2 4.1E-06 9E-11 76.9 8.2 57 120-176 23-80 (412)
226 PRK09848 glucuronide transport 98.2 1.5E-05 3.3E-10 75.6 12.4 59 125-183 29-93 (448)
227 TIGR00805 oat sodium-independe 98.2 1.6E-05 3.4E-10 78.5 12.1 91 90-185 321-415 (633)
228 PF12832 MFS_1_like: MFS_1 lik 98.2 8.8E-06 1.9E-10 56.2 7.3 59 119-177 15-73 (77)
229 PF03092 BT1: BT1 family; Int 98.2 1.2E-06 2.6E-11 82.4 3.4 230 4-259 135-372 (433)
230 PF03209 PUCC: PUCC protein; 98.1 0.00016 3.5E-09 65.6 15.6 117 133-259 238-355 (403)
231 TIGR00926 2A1704 Peptide:H+ sy 98.1 6.7E-05 1.4E-09 73.8 14.2 155 130-320 14-179 (654)
232 PF03825 Nuc_H_symport: Nucleo 98.1 2.5E-05 5.4E-10 72.6 10.5 64 120-183 18-82 (400)
233 COG2211 MelB Na+/melibiose sym 98.1 4.2E-05 9.1E-10 71.2 11.4 169 120-326 28-210 (467)
234 PF03137 OATP: Organic Anion T 98.0 1.4E-06 3E-11 83.8 0.0 87 90-181 296-386 (539)
235 TIGR00806 rfc RFC reduced fola 98.0 7.5E-05 1.6E-09 69.6 10.7 153 91-259 254-407 (511)
236 PF06963 FPN1: Ferroportin1 (F 97.9 0.00076 1.6E-08 62.9 17.1 131 124-257 278-408 (432)
237 PF11700 ATG22: Vacuole efflux 97.8 0.00089 1.9E-08 63.7 15.2 144 143-328 74-252 (477)
238 KOG2563|consensus 97.8 0.00027 5.9E-09 64.6 10.8 116 137-259 77-194 (480)
239 PF03092 BT1: BT1 family; Int 97.7 0.00031 6.7E-09 66.2 10.6 157 127-325 13-177 (433)
240 PF05978 UNC-93: Ion channel r 97.5 0.0071 1.5E-07 48.0 13.9 109 137-259 35-143 (156)
241 KOG2816|consensus 97.4 0.00046 9.9E-09 65.1 7.4 113 133-259 271-384 (463)
242 PRK15462 dipeptide/tripeptide 97.4 0.016 3.4E-07 55.4 17.8 116 140-259 309-432 (493)
243 PF01770 Folate_carrier: Reduc 97.4 0.0014 3E-08 60.2 9.8 150 91-258 239-393 (412)
244 PF03209 PUCC: PUCC protein; 97.4 0.0015 3.2E-08 59.5 9.8 126 132-259 8-143 (403)
245 PF03137 OATP: Organic Anion T 97.3 4.6E-05 9.9E-10 73.5 -0.5 137 121-257 20-193 (539)
246 KOG3626|consensus 97.2 0.0046 9.9E-08 60.7 12.3 153 105-257 98-289 (735)
247 TIGR00769 AAA ADP/ATP carrier 97.2 0.02 4.3E-07 54.2 15.3 120 139-259 43-183 (472)
248 COG3104 PTR2 Dipeptide/tripept 97.1 0.12 2.7E-06 48.5 19.9 118 139-259 324-448 (498)
249 PF06779 DUF1228: Protein of u 97.1 0.0034 7.3E-08 43.9 7.1 70 120-189 8-77 (85)
250 COG0477 ProP Permeases of the 97.0 0.015 3.2E-07 51.1 12.7 126 123-259 21-150 (338)
251 PF01770 Folate_carrier: Reduc 97.0 0.021 4.6E-07 52.6 13.3 112 134-259 35-147 (412)
252 KOG2325|consensus 96.7 0.0018 4E-08 60.7 4.3 57 228-315 411-467 (488)
253 KOG0637|consensus 96.7 0.0019 4E-08 59.4 3.9 153 103-257 32-195 (498)
254 PF02487 CLN3: CLN3 protein; 96.4 0.076 1.7E-06 49.0 12.8 55 204-259 335-389 (402)
255 KOG3098|consensus 96.2 0.066 1.4E-06 50.3 11.1 116 142-259 282-406 (461)
256 COG2270 Permeases of the major 96.1 0.048 1E-06 50.0 9.5 106 142-257 61-167 (438)
257 PF03219 TLC: TLC ATP/ADP tran 95.7 0.28 6.1E-06 46.8 13.2 109 151-259 71-198 (491)
258 TIGR01272 gluP glucose/galacto 95.6 0.021 4.6E-07 51.3 5.2 53 206-259 12-64 (310)
259 PF00854 PTR2: POT family; In 95.5 0.061 1.3E-06 49.7 8.0 116 170-320 2-120 (372)
260 KOG3810|consensus 95.4 0.52 1.1E-05 42.3 12.9 152 91-258 226-379 (433)
261 PF06963 FPN1: Ferroportin1 (F 95.4 0.71 1.5E-05 43.4 14.7 152 141-323 40-200 (432)
262 KOG4686|consensus 95.3 0.0042 9.1E-08 53.7 -0.1 119 129-257 69-188 (459)
263 KOG3762|consensus 95.3 0.029 6.2E-07 53.0 5.0 62 120-181 27-88 (618)
264 KOG1237|consensus 95.1 1.2 2.6E-05 43.6 15.7 163 126-319 60-241 (571)
265 KOG3098|consensus 95.0 0.48 1E-05 44.6 12.2 109 137-259 48-156 (461)
266 KOG4332|consensus 94.9 0.035 7.6E-07 47.7 4.0 59 126-184 59-117 (454)
267 PF07672 MFS_Mycoplasma: Mycop 94.9 0.55 1.2E-05 40.4 11.2 14 16-32 40-53 (267)
268 TIGR00939 2a57 Equilibrative N 94.8 0.083 1.8E-06 49.8 6.7 55 204-259 372-426 (437)
269 PF02487 CLN3: CLN3 protein; 94.7 0.25 5.4E-06 45.7 9.4 45 144-188 64-108 (402)
270 PF13000 Acatn: Acetyl-coenzym 94.4 0.35 7.6E-06 45.6 9.7 29 228-256 428-456 (544)
271 PF01733 Nucleoside_tran: Nucl 92.9 0.024 5.2E-07 50.9 -0.6 113 144-258 187-301 (309)
272 COG3202 ATP/ADP translocase [E 92.6 5.6 0.00012 37.7 14.1 123 137-259 59-202 (509)
273 KOG3574|consensus 92.5 2 4.3E-05 39.3 10.7 66 105-174 33-103 (510)
274 KOG0637|consensus 91.6 1.4 3E-05 41.2 9.0 35 143-177 336-370 (498)
275 PRK03612 spermidine synthase; 91.2 4.2 9.1E-05 39.5 12.5 30 135-164 46-75 (521)
276 KOG1479|consensus 89.4 1.5 3.3E-05 40.4 7.3 50 205-255 344-393 (406)
277 KOG1479|consensus 88.9 19 0.00041 33.5 13.9 44 120-165 34-82 (406)
278 PF13000 Acatn: Acetyl-coenzym 88.4 3.9 8.5E-05 38.9 9.3 49 125-175 21-76 (544)
279 TIGR00939 2a57 Equilibrative N 86.4 19 0.0004 34.2 12.9 31 147-177 53-83 (437)
280 KOG3574|consensus 85.2 17 0.00036 33.6 11.1 29 228-256 392-420 (510)
281 KOG2881|consensus 85.0 5.8 0.00013 33.9 7.7 26 157-182 257-283 (294)
282 PRK10697 DNA-binding transcrip 82.0 2 4.3E-05 32.1 3.5 31 16-46 36-68 (118)
283 KOG4332|consensus 81.0 23 0.0005 31.1 9.9 101 141-247 284-386 (454)
284 COG3202 ATP/ADP translocase [E 77.6 41 0.00089 32.1 11.2 42 145-186 327-369 (509)
285 KOG3880|consensus 73.8 2.3 5.1E-05 37.7 2.1 46 142-187 65-110 (409)
286 TIGR02978 phageshock_pspC phag 73.4 4.5 9.8E-05 30.5 3.3 31 16-46 31-63 (121)
287 COG5336 Uncharacterized protei 71.9 16 0.00034 26.7 5.5 32 149-180 52-84 (116)
288 PF05631 DUF791: Protein of un 70.3 47 0.001 30.3 9.6 70 91-166 236-305 (354)
289 PF04024 PspC: PspC domain; I 68.8 11 0.00023 24.6 3.9 30 16-45 31-60 (61)
290 PF03219 TLC: TLC ATP/ADP tran 66.1 62 0.0014 31.2 10.0 40 144-183 324-363 (491)
291 PRK09609 hypothetical protein; 64.2 1.1E+02 0.0023 27.4 14.6 35 16-53 78-113 (312)
292 TIGR00926 2A1704 Peptide:H+ sy 61.5 1.9E+02 0.004 29.2 13.3 29 140-168 281-310 (654)
293 PF07168 Ureide_permease: Urei 60.8 16 0.00034 32.2 4.5 10 161-170 16-25 (336)
294 KOG0055|consensus 58.5 1.6E+02 0.0036 31.7 11.9 16 16-34 808-823 (1228)
295 PF03547 Mem_trans: Membrane t 56.4 42 0.00091 31.0 7.0 20 148-167 4-23 (385)
296 PF11947 DUF3464: Protein of u 55.3 27 0.00059 27.5 4.6 31 225-255 114-144 (153)
297 PF10183 ESSS: ESSS subunit of 54.4 24 0.00053 25.8 4.0 27 16-45 59-85 (105)
298 TIGR00880 2_A_01_02 Multidrug 54.0 86 0.0019 23.0 8.5 39 140-178 88-126 (141)
299 KOG2601|consensus 53.8 1.9E+02 0.0041 27.0 10.7 45 141-185 65-109 (503)
300 PF02990 EMP70: Endomembrane p 51.4 2.4E+02 0.0053 27.5 12.0 67 93-165 252-319 (521)
301 TIGR00769 AAA ADP/ATP carrier 49.6 2.5E+02 0.0054 27.0 17.8 30 137-166 159-188 (472)
302 PF15050 SCIMP: SCIMP protein 47.8 14 0.0003 27.3 1.8 38 16-57 4-43 (133)
303 PF01988 VIT1: VIT family; In 45.6 1.8E+02 0.0039 24.4 13.8 59 121-185 145-203 (213)
304 cd02432 Nodulin-21_like_1 Nodu 44.4 2E+02 0.0042 24.4 14.0 37 148-184 170-206 (218)
305 PF02694 UPF0060: Uncharacteri 41.4 82 0.0018 23.1 4.9 47 139-185 54-100 (107)
306 PF07857 DUF1632: CEO family ( 40.4 95 0.0021 26.9 6.1 23 237-259 75-97 (254)
307 cd02434 Nodulin-21_like_3 Nodu 39.7 2.4E+02 0.0051 24.0 14.7 33 152-184 180-212 (225)
308 TIGR02230 ATPase_gene1 F0F1-AT 39.5 1.5E+02 0.0032 21.6 7.4 28 154-181 58-85 (100)
309 PF06027 DUF914: Eukaryotic pr 38.1 3.1E+02 0.0068 24.9 11.2 8 313-320 296-303 (334)
310 PRK02237 hypothetical protein; 37.1 1.3E+02 0.0028 22.2 5.3 47 139-185 56-102 (109)
311 PF05297 Herpes_LMP1: Herpesvi 33.6 13 0.00029 32.1 -0.1 11 317-327 179-189 (381)
312 KOG4830|consensus 33.4 63 0.0014 28.3 3.8 48 124-171 37-93 (412)
313 PF06645 SPC12: Microsomal sig 33.4 21 0.00045 24.4 0.8 37 4-46 19-58 (76)
314 COG1288 Predicted membrane pro 30.7 2.5E+02 0.0054 26.6 7.4 14 16-32 218-231 (481)
315 KOG4255|consensus 30.2 4.3E+02 0.0094 24.2 10.6 33 119-151 26-58 (439)
316 KOG3097|consensus 29.0 3.8E+02 0.0083 24.6 8.0 117 97-233 22-138 (390)
317 KOG4112|consensus 28.4 48 0.001 23.5 1.9 26 291-318 41-66 (101)
318 KOG1278|consensus 28.2 1E+02 0.0022 29.9 4.6 34 133-166 352-386 (628)
319 PF00854 PTR2: POT family; In 26.1 1.9E+02 0.0041 26.5 6.2 105 142-249 254-368 (372)
320 TIGR03733 lanti_perm_MutG lant 26.1 4.2E+02 0.0091 22.7 11.1 29 148-176 138-166 (248)
321 PF10183 ESSS: ESSS subunit of 25.9 74 0.0016 23.3 2.7 36 294-329 52-87 (105)
322 TIGR03732 lanti_perm_MutE lant 25.6 4.1E+02 0.0088 22.7 7.7 28 150-177 134-161 (241)
323 PRK10263 DNA translocase FtsK; 25.5 7.4E+02 0.016 27.4 10.6 21 147-167 60-80 (1355)
324 PF06123 CreD: Inner membrane 25.0 6E+02 0.013 24.1 9.2 24 149-172 301-324 (430)
325 KOG1277|consensus 24.2 6.4E+02 0.014 24.1 10.2 24 141-164 325-348 (593)
326 COG4858 Uncharacterized membra 24.0 4.1E+02 0.0088 21.8 6.7 29 239-267 163-191 (226)
327 PRK11715 inner membrane protei 23.4 6.5E+02 0.014 23.9 9.2 24 149-172 307-330 (436)
328 PF04281 Tom22: Mitochondrial 21.8 1.1E+02 0.0023 23.7 3.0 22 230-251 60-81 (137)
329 PF11085 YqhR: Conserved membr 20.9 4.6E+02 0.0099 21.2 8.2 33 149-181 78-111 (173)
No 1
>KOG0569|consensus
Probab=100.00 E-value=5.7e-34 Score=262.22 Aligned_cols=299 Identities=28% Similarity=0.413 Sum_probs=251.5
Q ss_pred echhhHHhhhhh--------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHh-cCCHHHHHHHHHHHcCCCcchHHH
Q psy17630 4 SGILYTYVIGSL--------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLS-KKRRKDAEKSLLILRGPNYDIHGE 74 (372)
Q Consensus 4 ~G~~~~~~i~~~--------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~-~~~~~~a~~~~~~~~~~~~~~~~~ 74 (372)
+|.+++..++.. |++.+.+. .++.++.++...++|||||||.. |++.+||++.++.+++.+++.++.
T Consensus 163 ~g~ll~~~~~l~~ilGt~~~W~~l~~~~----~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~ 238 (485)
T KOG0569|consen 163 IGILLGQVLGLPSLLGTEDLWPYLLAFP----LIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEI 238 (485)
T ss_pred HHHHHHHHHccHHhcCCCcchHHHHHHH----HHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHH
Confidence 455555444433 99999999 55555588999999999999988 899999999999999987644333
Q ss_pred HHHHHHHHHH--hhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHH
Q psy17630 75 LDELQKELDI--QAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQ 152 (372)
Q Consensus 75 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 152 (372)
.+..++.+++ +++++.+++++++++..|+...+.+.+....+++|.+...+|...++++.|++..++.+.+...++..
T Consensus 239 e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~ 318 (485)
T KOG0569|consen 239 EEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVN 318 (485)
T ss_pred HHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3322222222 22366789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeecc
Q psy17630 153 VIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGE 232 (372)
Q Consensus 153 ~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 232 (372)
.+.++++.++.||+|||+.++.++.++.++.+++..........+ +...+..+...+++...++.+.+|++|.+.+|
T Consensus 319 ~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~---~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aE 395 (485)
T KOG0569|consen 319 LLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG---SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAE 395 (485)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHH
Confidence 999999999999999999999999999998888776655444320 11223446777788888999999999999999
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHH
Q psy17630 233 LFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC 312 (372)
Q Consensus 233 ~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 312 (372)
++|++.|+.++++.....++..++... .++.+.+..|. ..|+++.+.+
T Consensus 396 Lf~~~~R~aa~s~~~~~~w~~~fiv~~-------------------------------~fp~l~~~~g~-~~filF~i~~ 443 (485)
T KOG0569|consen 396 LFPQSARSAAQSVATAVNWLSNFIVGF-------------------------------AFPPLQNVIGP-YVFILFVIPL 443 (485)
T ss_pred hCCccchHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHhcc-hhhHHHHHHH
Confidence 999999999999999999999999998 88889888887 6888999999
Q ss_pred HHHHhhhheeccCCCCCCHHHHHHHhccC
Q psy17630 313 IIGTFFVYFVVPETKNKSLQQIQDELSGV 341 (372)
Q Consensus 313 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 341 (372)
.+..+..++.+||||+|+..|+.++.+++
T Consensus 444 ~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 444 AIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 99999999999999999999988887766
No 2
>KOG0254|consensus
Probab=99.95 E-value=9.1e-26 Score=216.55 Aligned_cols=303 Identities=30% Similarity=0.481 Sum_probs=236.3
Q ss_pred eechhhHHhhhhh-------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcC-CCcchHHH
Q psy17630 3 VSGILYTYVIGSL-------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRG-PNYDIHGE 74 (372)
Q Consensus 3 ~~G~~~~~~i~~~-------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~-~~~~~~~~ 74 (372)
.+|.++++.++.. ||..+.+. .+.+++ ..+..+++||||+|+.++++.+++++.++++++ .+.+.+.+
T Consensus 188 ~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~---~i~~~~-~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~ 263 (513)
T KOG0254|consen 188 TIGILLGYCINYGTSKVYAGWRIPLGLA---LIPAVI-LALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVE 263 (513)
T ss_pred HHHHHHHHHHhhhhccCCccHHHHHHHH---HHHHHH-HHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHH
Confidence 3556666555543 99999998 555555 455589999999999999999999999999998 44555555
Q ss_pred HHHHHHHHHHhh---hhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHH
Q psy17630 75 LDELQKELDIQA---QKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFI 151 (372)
Q Consensus 75 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 151 (372)
.++.+.....+. +.+..+.++++ +..+++..+.+.+..+.+.++++...+|.+.+++..|.+... .....+.++.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v 341 (513)
T KOG0254|consen 264 LELLKIKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVV 341 (513)
T ss_pred HHHHHHHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHH
Confidence 555552211111 11223556665 558888999999999999999999999999999999876544 6777788888
Q ss_pred HHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeec
Q psy17630 152 QVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMG 231 (372)
Q Consensus 152 ~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (372)
.+++..++.++.||+|||+.++.+...+.++.++++.................+..+...+++...++.+.++++|.+.+
T Consensus 342 ~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~s 421 (513)
T KOG0254|consen 342 NFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVS 421 (513)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhh
Confidence 99999999999999999999999999999999988877655443211123446677777788888889999999999999
Q ss_pred cCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHH
Q psy17630 232 ELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY 311 (372)
Q Consensus 232 e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 311 (372)
|.+|.+.|+.+.++....++..+++... .+....+..+....|..++++
T Consensus 422 Eifp~~~r~~~~s~~~~~n~~~~~~v~~-------------------------------~~~~~~~~~~~~~~f~~f~~~ 470 (513)
T KOG0254|consen 422 EIFPLRLRSKGASLAVAVNWLWNFLISF-------------------------------FFPFITEALGIGGTFGYFGGI 470 (513)
T ss_pred ccCcHhHHhhhHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHhccccchHHHHHHH
Confidence 9999999999999999999998888776 666666655444577788888
Q ss_pred HHHHHh-hhheeccCCCCCCHHHHHHHhccCc
Q psy17630 312 CIIGTF-FVYFVVPETKNKSLQQIQDELSGVK 342 (372)
Q Consensus 312 ~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~ 342 (372)
+.+... ..++++|||++++.++.++..++..
T Consensus 471 ~~~~~~~fv~~~~pETkg~sleei~~~~~~~~ 502 (513)
T KOG0254|consen 471 CLLSLIIFVFFFVPETKGLTLEEINELFEEGI 502 (513)
T ss_pred HHHHHHHHheEEcccCCCCcHHHHHHHHHcCC
Confidence 777777 7788999999999999888766543
No 3
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.94 E-value=2.3e-25 Score=213.64 Aligned_cols=271 Identities=20% Similarity=0.231 Sum_probs=171.7
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHH-HHHHHHHHHcCCCcc-hHHHHHHHHHHHHHhhhhhhhHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRK-DAEKSLLILRGPNYD-IHGELDELQKELDIQAQKKKSLV 93 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~-~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 93 (372)
||++|.+. + ++.++.++.++++||||||+..++|.+ ++++.+++..+.+.+ ..++.++.++ ++++.+.+++
T Consensus 203 WR~~~~~~---~-ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 275 (502)
T TIGR00887 203 WRILIGFG---A-VPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKAST---AVEVPKASWS 275 (502)
T ss_pred HHHHHHHH---H-HHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhc---cccchhhhHH
Confidence 99999887 4 455556777889999999999888764 466666666443221 1111111111 1111223577
Q ss_pred HHHhcc---chhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhh------------HHHHHHHHHHHHHHH
Q psy17630 94 EIYSNK---ATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNY------------GQNIVGFIQVIMTFF 158 (372)
Q Consensus 94 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~ 158 (372)
++++++ +.++..+.....++.. ...++....+.|.++++.|++..+.+. ...+..++.+++.++
T Consensus 276 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 354 (502)
T TIGR00887 276 DFFTHFFKWRHGKHLLGTAGSWFLL-DIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWV 354 (502)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777643 1222222222222222 222345566788888888876543221 233345566778899
Q ss_pred HHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcch
Q psy17630 159 SSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV 238 (372)
Q Consensus 159 ~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 238 (372)
+++++||+|||++++.+..+.+++.++++...... . ..............++.+..+..+.+.+|.+|++.
T Consensus 355 ~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~ 425 (502)
T TIGR00887 355 TVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL--S-------THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY 425 (502)
T ss_pred HHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc--c-------hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH
Confidence 99999999999999888877777666554432110 0 01111222222233345566677788899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHh----------cccchhhHHH
Q psy17630 239 KGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA----------FGTGVAFGTF 308 (372)
Q Consensus 239 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~ 308 (372)
|+++.++.+..++++++++|. +.+.+.+. .++...+.++
T Consensus 426 R~~~~g~~~~~~~~~~~~~~~-------------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~i~ 474 (502)
T TIGR00887 426 RSTAHGISAASGKAGAIIGQF-------------------------------GFLYLAQHGDPTKGYPTGIWMGHVLEIF 474 (502)
T ss_pred HHHHHHHHHHHhhhHHHHHHH-------------------------------HhhhhhccccccccccccccchHHHHHH
Confidence 999999999999999999998 77777663 2334577888
Q ss_pred HHHHHHHHhhhheeccCCCCCCHHHHH
Q psy17630 309 AVYCIIGTFFVYFVVPETKNKSLQQIQ 335 (372)
Q Consensus 309 ~~~~~~~~~~~~~~~~e~~~~~~~~~~ 335 (372)
+++++++.+.. +++|||+++++||.+
T Consensus 475 ~~~~~~~~i~~-~~lpEt~~~~leei~ 500 (502)
T TIGR00887 475 ALFMFLGILFT-LLIPETKGKSLEELS 500 (502)
T ss_pred HHHHHHHHHHh-eEeccCCCCCHHhhh
Confidence 88877776654 578999999887654
No 4
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.93 E-value=6.2e-30 Score=242.30 Aligned_cols=294 Identities=32% Similarity=0.535 Sum_probs=213.0
Q ss_pred eechhhHHhhhhh---------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHH
Q psy17630 3 VSGILYTYVIGSL---------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHG 73 (372)
Q Consensus 3 ~~G~~~~~~i~~~---------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~ 73 (372)
.+|.+++.+++.. ||+.+++. .+++++ .++..+++||||+|+..++|.+||++.++++++.+.+. +
T Consensus 148 ~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~---~~~~l~-~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~-~ 222 (451)
T PF00083_consen 148 ALGILLASLIGYIVSYYSDNWGWRILLIFG---AIPSLL-VLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIED-E 222 (451)
T ss_pred cccccccccccccccccccccccccccccc---cccccc-ccccccccccccceeccccccccccccccccccccccc-c
Confidence 4566666555432 99999998 555554 66777899999999999999999999999976553322 2
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHH
Q psy17630 74 ELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQV 153 (372)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 153 (372)
+.++..++.++.++.+.+++++++++..+++.+..+.+....+..+.+...+|.+.+.++.+.+.. ........+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~ 300 (451)
T PF00083_consen 223 EIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNF 300 (451)
T ss_pred cccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccc
Confidence 222222222222222256788888876667777777777777777777788888888888876655 344555667777
Q ss_pred HHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccC
Q psy17630 154 IMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL 233 (372)
Q Consensus 154 ~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 233 (372)
++.+++.++.||+|||+.++.+.++++++.+.++.......+. +.......+....+....++.+++++.+.+.+|+
T Consensus 301 ~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~El 377 (451)
T PF00083_consen 301 LGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSS---SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAEL 377 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc---ccccccccceeeeecccccccccccccccccccc
Confidence 8888888999999999999999888888777664111111110 0011233344444455566677888888999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHH
Q psy17630 234 FTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCI 313 (372)
Q Consensus 234 ~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 313 (372)
+|++.|+++.++....+++++++.+. +.+.+.+..+....+.+++++++
T Consensus 378 fPt~~R~~~~~~~~~~~~i~~~i~~~-------------------------------~~~~~~~~~~~~~~~~i~~~~~~ 426 (451)
T PF00083_consen 378 FPTKVRSTGIGLSYAVGRIGGFIIPF-------------------------------LFPYLFNNLGGWGVFLIFAGVCL 426 (451)
T ss_pred cccccccccccccccccccccccccc-------------------------------ccccccccccccccchhhHHHHH
Confidence 99999999999999999999998888 66666666663457888888888
Q ss_pred HHHhhhheeccCCCCCCHHHHHHH
Q psy17630 314 IGTFFVYFVVPETKNKSLQQIQDE 337 (372)
Q Consensus 314 ~~~~~~~~~~~e~~~~~~~~~~~~ 337 (372)
+..++.++++|||++++++|.+++
T Consensus 427 i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 427 IAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred HHHhheeEEEeeCCCCCHHHHHhh
Confidence 888888899999999999998765
No 5
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.93 E-value=2.8e-23 Score=198.40 Aligned_cols=277 Identities=27% Similarity=0.449 Sum_probs=188.1
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (372)
||+.|++. +++.++ .++..+++||+|+|+..+++.+++++..++..+.+. .++..++.++..+++.+. .+..
T Consensus 193 Wr~~f~~~---~~~~~~-~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~ 264 (479)
T PRK10077 193 WRYMFASE---AIPALL-FLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL-ATQALQEIKHSLDHGRKT---GGKL 264 (479)
T ss_pred hHHHHHHH---HHHHHH-HHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh-HHHHHHHHHHHHHHhhhh---hhhh
Confidence 99999998 666655 455677899999999888888888777777654432 111122221111110000 0111
Q ss_pred HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHh
Q psy17630 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLIS 175 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 175 (372)
+.- ........+......+..+++...++.|.+.++.|.+.....+.....++..+++.+++++++||+|||+.++.+
T Consensus 265 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~ 342 (479)
T PRK10077 265 LMF--GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIG 342 (479)
T ss_pred cch--hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHh
Confidence 110 111222223333444455566677888999888898877777777888889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHH
Q psy17630 176 DICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEF 255 (372)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~ 255 (372)
.++.+++.+++...... . ............+..+++..+.+..+.+++|.+|++.|++++++.+..+++++.
T Consensus 343 ~~~~~v~~~~l~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~ 414 (479)
T PRK10077 343 ALGMAIGMFSLGTAFYT--Q------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANY 414 (479)
T ss_pred HHHHHHHHHHHHHHHhc--C------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHH
Confidence 88888877766443211 1 012223333444444555555567778999999999999999999999999998
Q ss_pred HHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhH------HHHHhcccchhhHHHHHHHHHHHhhhheeccCCCCC
Q psy17630 256 VVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFD------DVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNK 329 (372)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 329 (372)
+++. ..+ .+.+..+++..|++++++++++.++.+++.||++++
T Consensus 415 ~~~~-------------------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 463 (479)
T PRK10077 415 FVSW-------------------------------TFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 463 (479)
T ss_pred HHHH-------------------------------HhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 8877 433 233567787788888888888887777788999999
Q ss_pred CHHHHHHHhccC
Q psy17630 330 SLQQIQDELSGV 341 (372)
Q Consensus 330 ~~~~~~~~~~~~ 341 (372)
+.+|.++..++.
T Consensus 464 ~~~~~~~~~~~~ 475 (479)
T PRK10077 464 TLEEMEALWEPE 475 (479)
T ss_pred CHHHHHHHHhhc
Confidence 888877665543
No 6
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.92 E-value=1.7e-23 Score=204.82 Aligned_cols=263 Identities=16% Similarity=0.201 Sum_probs=177.9
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcch----HHHH--HHHHHHHHH-----
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDI----HGEL--DELQKELDI----- 84 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~----~~~~--~~~~~~~~~----- 84 (372)
||++|++. +++.++.++.++++||||+|+..+++.+++.+.++++++.|... .... .+.+.....
T Consensus 333 WR~l~~i~----~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (742)
T TIGR01299 333 WRVFVIVC----AFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIE 408 (742)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhc
Confidence 99999988 44555577788899999999999999999999999997765321 1110 011110000
Q ss_pred -h-hh-----------------hhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-----------
Q psy17630 85 -Q-AQ-----------------KKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT----------- 134 (372)
Q Consensus 85 -~-~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 134 (372)
+ .. ...++.++|+.+ +++.+++..++++...+ +++.+..|+|.+++..
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~-~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~~~~~~~~~~~~~~~ 486 (742)
T TIGR01299 409 IESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPE-VREITIKLMGVWFTLSF-GYYGLSVWFPDMIKHLQADDYAALTKN 486 (742)
T ss_pred ccccccchhhcchhhhhhhhhhHHHHHHHHcCcc-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 0 00 001355566544 77777777777766555 4788899999875431
Q ss_pred -------------------------------CC-----C---------------C-------------------------
Q psy17630 135 -------------------------------NS-----K---------------I------------------------- 138 (372)
Q Consensus 135 -------------------------------g~-----~---------------~------------------------- 138 (372)
|+ . .
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 566 (742)
T TIGR01299 487 FPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKF 566 (742)
T ss_pred ccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhh
Confidence 00 0 0
Q ss_pred ----------------------------CChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHH
Q psy17630 139 ----------------------------ISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYF 190 (372)
Q Consensus 139 ----------------------------~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~ 190 (372)
........+..++.+++.+++|+++||+|||++++++.++.+++++++++..
T Consensus 567 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~ 646 (742)
T TIGR01299 567 IDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN 646 (742)
T ss_pred hhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 0012335566788899999999999999999999999888888877665431
Q ss_pred HHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCccc
Q psy17630 191 YLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVK 270 (372)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (372)
+....++..++.+++.+. ..+..+++++|++|++.|++++|+.+..+.+|++++|.
T Consensus 647 ------------s~~~ll~~~~l~g~~~~~-~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~----------- 702 (742)
T TIGR01299 647 ------------SESAMIALLCLFGGLSIA-AWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGIL----------- 702 (742)
T ss_pred ------------cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 112223333333333333 33455588999999999999999999999999999998
Q ss_pred ccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCCCC
Q psy17630 271 GLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKS 330 (372)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 330 (372)
+.+.+.+. +...++++.+++.++++++.+ ++|||+++.
T Consensus 703 --------------------i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~ 740 (742)
T TIGR01299 703 --------------------IFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTRGQV 740 (742)
T ss_pred --------------------HHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence 76666553 344577777777777666655 669998764
No 7
>KOG0253|consensus
Probab=99.91 E-value=7.7e-23 Score=177.10 Aligned_cols=278 Identities=15% Similarity=0.161 Sum_probs=186.5
Q ss_pred ceechhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcch----
Q psy17630 2 VVSGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDI---- 71 (372)
Q Consensus 2 ~~~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~---- 71 (372)
|..|......+.+. |||..+.. + .++..+....+++||||||.+.+|++++|.+.++++.+.|...
T Consensus 209 waig~v~ea~law~vm~~~gwr~~l~~~---~-~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplg 284 (528)
T KOG0253|consen 209 WAIGQVFEALLAWGVMSNFGWRYLLFTS---S-TPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLG 284 (528)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH---H-hHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcc
Confidence 56677777777766 99999888 4 6666677888999999999999999999999999987665420
Q ss_pred ----------HHHHHHHHHHH-HHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcC-----
Q psy17630 72 ----------HGELDELQKEL-DIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATN----- 135 (372)
Q Consensus 72 ----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----- 135 (372)
++|..+..+.+ +..++...+..+++. |..+|..+.....++...+. ++..........+...
T Consensus 285 vl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~ 362 (528)
T KOG0253|consen 285 VLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLY 362 (528)
T ss_pred eeeeehhhhhhhhhhchhhhhhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccc
Confidence 11111111111 111233345556654 44777777666666654443 3333333333222110
Q ss_pred ---------------CCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 136 ---------------SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 136 ---------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
.+...-..-..+..+..++|.++.+++.||+|||+++....++++++.++.... ..
T Consensus 363 ~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c---~~------ 433 (528)
T KOG0253|consen 363 NRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC---KT------ 433 (528)
T ss_pred hhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh---cC------
Confidence 111111223556788999999999999999999999999999888887775443 11
Q ss_pred ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL 280 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (372)
.....+..+..-++...++. +.|+|.+|++|+..|+++.|.+...+.+|+++.|.
T Consensus 434 ---rn~~tvllf~arafisg~fq-vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~--------------------- 488 (528)
T KOG0253|consen 434 ---RNAYTVLLFTARAFISGAFQ-VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPV--------------------- 488 (528)
T ss_pred ---cchhHHHHHHHHHHHhchhe-EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhH---------------------
Confidence 22233333344444444444 56799999999999999999999999999999997
Q ss_pred cchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCCCCH
Q psy17630 281 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSL 331 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 331 (372)
+. +........+..+++++++++.+...++--||++|.+
T Consensus 489 ----------iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 489 ----------IA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred ----------HH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 55 3344444567788888888888877755558988763
No 8
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.90 E-value=1.8e-21 Score=185.38 Aligned_cols=292 Identities=30% Similarity=0.458 Sum_probs=196.4
Q ss_pred eechhhHHhhh---hh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHH
Q psy17630 3 VSGILYTYVIG---SL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHG 73 (372)
Q Consensus 3 ~~G~~~~~~i~---~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~ 73 (372)
.+|..+++.++ .. ||+.|++. ++..++ .++..+++||+|+++..+++.+++++..++..+.+.+...
T Consensus 173 ~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~---~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (481)
T TIGR00879 173 TFGILVAYGFGSGKVSLNNTLGWRIPLGLQ---LIPAGL-LFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKE 248 (481)
T ss_pred HHHHHHHHHHHHHhhcCCCCccHHHHHHHH---HHHHHH-HHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHH
Confidence 45677777766 22 99999998 444444 5666778999999988877777766666655443332221
Q ss_pred HHHHHH---HHHH-HhhhhhhhHHHHHhccc-hhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHH
Q psy17630 74 ELDELQ---KELD-IQAQKKKSLVEIYSNKA-TVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIV 148 (372)
Q Consensus 74 ~~~~~~---~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (372)
...... .... +.+..+..+.+.++..+ ..+..+....+..+..........++.|.+.++.|++..+.+......
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 328 (481)
T TIGR00879 249 LLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIV 328 (481)
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 111110 0000 00111112334443221 233444444444444444455677888988888899888888888889
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhccccccccee
Q psy17630 149 GFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGV 228 (372)
Q Consensus 149 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (372)
.++.+++.++.|+++||+|||+.+..+.++.+++.+.+.......... ......+..+....++..+++.+..+..+.
T Consensus 329 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (481)
T TIGR00879 329 GAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTG--SSKSSGNVAIVFILLFIAFFAMGWGPVPWV 406 (481)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCC--cccchhHHHHHHHHHHHHHHHccccCeehh
Confidence 999999999999999999999999888777777666654321111110 000012333334444445555566667767
Q ss_pred eeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHH
Q psy17630 229 MMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTF 308 (372)
Q Consensus 229 ~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 308 (372)
++.|.+|++.|++++++.+...+++++++|. +.+.+.+..+|+..|++.
T Consensus 407 ~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~-------------------------------~~~~~~~~~~~~~~f~~~ 455 (481)
T TIGR00879 407 IVSEIFPLSLRPKGISIAVAANWLANFIVGF-------------------------------LFPTMLESIGVGGVFIFF 455 (481)
T ss_pred hhhccCChHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHhcCccceehhH
Confidence 8899999999999999999999999999998 888888888999899999
Q ss_pred HHHHHHHHhhhheeccCCCCCCH
Q psy17630 309 AVYCIIGTFFVYFVVPETKNKSL 331 (372)
Q Consensus 309 ~~~~~~~~~~~~~~~~e~~~~~~ 331 (372)
++++++++++.+++.||+++++.
T Consensus 456 ~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 456 GGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred HHHHHHHHHHHheecccCCCCCh
Confidence 99988888888778888876654
No 9
>TIGR00898 2A0119 cation transport protein.
Probab=99.89 E-value=6.3e-22 Score=190.29 Aligned_cols=273 Identities=18% Similarity=0.196 Sum_probs=175.3
Q ss_pred eechhhHHhhhhh---hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcch-HHHHHHH
Q psy17630 3 VSGILYTYVIGSL---YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDI-HGELDEL 78 (372)
Q Consensus 3 ~~G~~~~~~i~~~---Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 78 (372)
.+|.+++++++.. ||+.|++. +++.++ ..+..+++||||+|+..+++.+++++.+++..+.+... ..+..+.
T Consensus 226 ~~g~~~~~~~~~~~~~wr~~~~~~---~i~~~~-~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 301 (505)
T TIGR00898 226 SLGLVLLPLVAYFIPDWRWLQLAV---SLPTFL-FFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSL 301 (505)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH---HHHHHH-HHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhh
Confidence 3456666666655 99999999 666555 44555889999999999999999998888776544321 1111111
Q ss_pred HHHH-HHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHH
Q psy17630 79 QKEL-DIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTF 157 (372)
Q Consensus 79 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 157 (372)
+... ..+++++.+++++++++..++..+.....+..... ..+..+....+.+.+ ........++..+++.+
T Consensus 302 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~ 373 (505)
T TIGR00898 302 SLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF-----SYYGLVLDLGNLGGN---IYLDLFISGLVELPAKL 373 (505)
T ss_pred hhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH-----HHHHHhccccccCCC---hHHHHHHHHHHHHHHHH
Confidence 1111 11112234678899988666655544443332211 112222223333322 34455667788889999
Q ss_pred HHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcc
Q psy17630 158 FSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD 237 (372)
Q Consensus 158 ~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 237 (372)
+.+++.||+|||+.+.++.++.+++.+++... .. ...+.......+..++.+.. .+..+.+.+|.+|++
T Consensus 374 ~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~ 442 (505)
T TIGR00898 374 ITLLLIDRLGRRYTMAASLLLAGVALLLLLFV---PV-------DLYFLRTALAVLGKFGITSA-FQMVYLYTAELYPTV 442 (505)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc---CC-------CchHHHHHHHHHHHHHHHHH-HHHHHHHhcccccHH
Confidence 99999999999999999888877776655433 11 01122233333333333322 234558889999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHh
Q psy17630 238 VKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTF 317 (372)
Q Consensus 238 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 317 (372)
.|++++|+.+..+.++++++|. +.+ + ...++..++.+++++++++.+
T Consensus 443 ~r~~~~g~~~~~~~ig~~i~p~-------------------------------i~~-~-~~~~~~~~~~~~~~~~~~~~~ 489 (505)
T TIGR00898 443 VRNLGVGVCSTMARVGSIISPF-------------------------------LVY-L-GEKWLFLPLVLFGGLALLAGI 489 (505)
T ss_pred HHhhhHhHHHHHHHHHHHHHhH-------------------------------HHH-H-HHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999998 666 3 334555678888877777766
Q ss_pred hhheeccCCCCCCHH
Q psy17630 318 FVYFVVPETKNKSLQ 332 (372)
Q Consensus 318 ~~~~~~~e~~~~~~~ 332 (372)
+.+ ++|||++++++
T Consensus 490 ~~~-~lpet~~~~l~ 503 (505)
T TIGR00898 490 LTL-FLPETKGVPLP 503 (505)
T ss_pred HHH-cCcCCCCCCCC
Confidence 654 78999887654
No 10
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.85 E-value=1.2e-19 Score=173.49 Aligned_cols=244 Identities=15% Similarity=0.137 Sum_probs=146.2
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (372)
||+.|++. +++.++ .++++..+||||+|...+++.++.. ++ . .+++++.+++++
T Consensus 191 WR~~f~i~---~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~~-------~~-------------~--~~~~~~~~~~~~ 244 (490)
T PRK10642 191 WRIPFFIA---LPLGII-GLYLRHALEETPAFQQHVDKLEQGD-------RE-------------G--LQDGPKVSFKEI 244 (490)
T ss_pred HHHHHHHH---HHHHHH-HHHHHHcCCCChhHHHHHHhhhhhc-------cc-------------c--ccccccCCHHHH
Confidence 99999998 544443 5566778999999864322211100 00 0 001122345666
Q ss_pred HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 174 (372)
+++ .++........... ....++....+.|.++++ .|++..+.........++.+++.++.|+++||+|||+.+..
T Consensus 245 ~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 321 (490)
T PRK10642 245 ATK--HWRSLLTCIGLVIA-TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVIL 321 (490)
T ss_pred HHH--hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 654 23333333322222 223355667788888754 58877777777777888899999999999999999998887
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHH
Q psy17630 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE 254 (372)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 254 (372)
+.++..+..+.+... .... +....+....+.+.+.+...+... .+.+|.+|++.|+++.++.+..+..++
T Consensus 322 ~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~g~~~~~~~g~~~-~~~~~~~p~~~Rg~~~g~~~~~~~~~g 391 (490)
T PRK10642 322 GSVALFVLAIPAFIL--INSN-------VIGLIFAGLLMLAVILNCFTGVMA-STLPAMFPTHIRYSALAAAFNISVLVA 391 (490)
T ss_pred HHHHHHHHHHHHHHH--HhCC-------CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCccchHHHHHHHHHHHHHH
Confidence 765444333221111 1111 112222333333333333333333 667899999999999998777777888
Q ss_pred HHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHHhhhheeccCCCCCC
Q psy17630 255 FVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYFVVPETKNKS 330 (372)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 330 (372)
.++|. +.+.+.+..+ |+.+++...+.+++..+..+ ++||++++.
T Consensus 392 ~~~p~-------------------------------i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes~~~~ 436 (490)
T PRK10642 392 GLTPT-------------------------------LAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKETANRP 436 (490)
T ss_pred HHHHH-------------------------------HHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HhccccCCC
Confidence 88888 7777766544 55555555556665555544 569986653
No 11
>KOG0252|consensus
Probab=99.84 E-value=3.7e-21 Score=171.56 Aligned_cols=273 Identities=19% Similarity=0.206 Sum_probs=179.4
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHh-cCCHHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHHhhhhhhhHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLS-KKRRKDAEKSLLILRGPNYD-IHGELDELQKELDIQAQKKKSLV 93 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~-~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 93 (372)
||..|.+. .++.+..+..++.+|||++|-.. .++.+.+. ++..++... .+++... ....+..+.....+.
T Consensus 224 WRl~~glg----~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~~~~~~~~~~~-~~~~~~~~~~~~~F~ 295 (538)
T KOG0252|consen 224 WRIIFGLG----AVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVLSVDIEAESTA-ESDVPPPSNSFGLFS 295 (538)
T ss_pred HHHHHHHH----HHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hccccccccccchhhcc-ccCCCCcccccchHH
Confidence 99999998 55555588899999999998522 22222222 222221111 1111000 000000001111233
Q ss_pred HHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhh--------H-HHHHHHHHHHHHHHHHHHHh
Q psy17630 94 EIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNY--------G-QNIVGFIQVIMTFFSSLLVD 164 (372)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~-~~~~~~~~~~~~~~~g~l~d 164 (372)
..+..+ +-+.++..+..++..... ++....+...+++..|+.+.+... . ..+...+.++|..+...++|
T Consensus 296 ~~f~~~-hg~~Llgt~~~WFllDia-fy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id 373 (538)
T KOG0252|consen 296 RLFLRW-HGKHLLGTAGTWFLLDIA-FYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFID 373 (538)
T ss_pred HHHHHH-HHHHHHHHHHHHHhhhhh-hhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEee
Confidence 444433 445666666666665554 566777888888887775554433 1 11222333446667778899
Q ss_pred hcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHH
Q psy17630 165 KAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALG 244 (372)
Q Consensus 165 r~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 244 (372)
++|||+..+.+.+++.+..+.++..+.... +....++...+..++...+.+.....+.+|.||++.|+++.|
T Consensus 374 ~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~--------~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hG 445 (538)
T KOG0252|consen 374 IIGRKYIQLMGFFIMTIFFFVIAGPYNQLE--------NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHG 445 (538)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHcCCccccc--------ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhh
Confidence 999999999999999988887766533211 122234444555566677888788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHH-----hcccchhhHHHHHHHHHHHhhh
Q psy17630 245 VICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVER-----AFGTGVAFGTFAVYCIIGTFFV 319 (372)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~ 319 (372)
+....+.+|+.++.. .+.+..+ ..+.+..+++++++++++.+..
T Consensus 446 IsAA~GK~GAivg~~-------------------------------~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T 494 (538)
T KOG0252|consen 446 ISAASGKAGAIVGAF-------------------------------GFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT 494 (538)
T ss_pred HHHHhccchHHHHHH-------------------------------HhhHhhhccCCccccchHHHHHHHHHHHHhHhee
Confidence 999999999999998 7777777 6788889999999999888776
Q ss_pred heeccCCCCCCHHHHHHHh
Q psy17630 320 YFVVPETKNKSLQQIQDEL 338 (372)
Q Consensus 320 ~~~~~e~~~~~~~~~~~~~ 338 (372)
+ ++|||+++++|+.+.+.
T Consensus 495 ~-l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 495 L-LIPETKGKSLEEISNEE 512 (538)
T ss_pred E-EeecccccCHHHhcChh
Confidence 5 78899999998874433
No 12
>KOG0255|consensus
Probab=99.79 E-value=2.9e-17 Score=158.50 Aligned_cols=281 Identities=20% Similarity=0.201 Sum_probs=182.0
Q ss_pred chhhHHhhhhh---hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCC---cchHHHHHHH
Q psy17630 5 GILYTYVIGSL---YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPN---YDIHGELDEL 78 (372)
Q Consensus 5 G~~~~~~i~~~---Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ 78 (372)
|.+...+.+++ ||+.+++. .++.++ .++.+++.||||||+..+++.+++.+.+++..+.| .+.++.....
T Consensus 219 ~~~~~~~~a~~~~~Wr~~~~~~---~~~~~~-~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~ 294 (521)
T KOG0255|consen 219 GLMLPAGAAYITRDWRWLFWII---SIPSGL-FLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLE 294 (521)
T ss_pred HHHHHHHHHHHHhhHHHHHHHH---HHHHHH-HHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHH
Confidence 33333444444 99999999 666655 44457777799999999999999999999987654 2222222221
Q ss_pred ---HHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHH
Q psy17630 79 ---QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIM 155 (372)
Q Consensus 79 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 155 (372)
++......+++..+.++++.++.++..+...+.+..... ..+-++....+.| .+........+......
T Consensus 295 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~-----~y~gl~~~~~~lg---~~~~~~~~~~~~~~~p~ 366 (521)
T KOG0255|consen 295 LLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSL-----VYYGLSLNVSGLG---GNIYLNFTLSGLVELPA 366 (521)
T ss_pred HHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhH-----HHHhhhhhhhhcC---chHHHHHHHHHHHHhhH
Confidence 111111112335688899988777777666666643222 1122222223333 34555666666688888
Q ss_pred HHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCC
Q psy17630 156 TFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT 235 (372)
Q Consensus 156 ~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 235 (372)
....+...|++|||.....+.++..+++++.+....... .+.......+..++.+.++... +.+.+|++|
T Consensus 367 ~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~p 436 (521)
T KOG0255|consen 367 YFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLG---------GWLHWILPLLGKFFIGSAFNLI-FLYSAELIP 436 (521)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccch---------hHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcc
Confidence 888899999999999999999999998888766522111 0123333333334444455545 688999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHH
Q psy17630 236 PDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIG 315 (372)
Q Consensus 236 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 315 (372)
+..|+.+.+.......++++++|. +.... ........+.+++..+.+.
T Consensus 437 t~~r~~~~~~~~~~~~~~~i~ap~-------------------------------~~~~~-~~~~~~~~~~~~~~~~~l~ 484 (521)
T KOG0255|consen 437 TVVRNTAVGAISAAARLGSILAPL-------------------------------FPLLL-RQMFPLLGLILFGWLALLL 484 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHH-hhhcccchHHHHHHHHHHH
Confidence 999999999999999999999887 33222 2222222333356666777
Q ss_pred HhhhheeccCCCCCCHHHHHHHhc
Q psy17630 316 TFFVYFVVPETKNKSLQQIQDELS 339 (372)
Q Consensus 316 ~~~~~~~~~e~~~~~~~~~~~~~~ 339 (372)
..++.+++|||+++.+.+..++.+
T Consensus 485 ~~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 485 GLLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHHhcCcccCCCCCchhHHHHH
Confidence 767767899999998876655544
No 13
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.76 E-value=1.5e-17 Score=147.90 Aligned_cols=247 Identities=14% Similarity=0.162 Sum_probs=150.3
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (372)
||..|++. +++++++.++.++.++|+|+-.- -.+.|| .+++..+ .+ .++++.+..+.+++
T Consensus 184 w~~~f~~p---giiaiival~~~~~~rd~Pqs~G-LP~ie~-------~~~d~~e-------~~--~~~~~~~~ls~~~i 243 (448)
T COG2271 184 WRAAFYFP---GIIAIIVALILLFLLRDRPQSEG-LPPIEE-------YRGDPLE-------IY--EEEKENEGLTAWQI 243 (448)
T ss_pred hhHHHHHH---HHHHHHHHHHHHHHhCCCccccC-CCCHHH-------hhcCchh-------hh--hhhccCCCccHHHH
Confidence 99999999 99999999999999999996210 001111 1111000 00 00111111233443
Q ss_pred HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc--CCcchh
Q psy17630 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA--GRRPLL 172 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~ 172 (372)
+.+.-...+.++.+.+........-+.+..|.|.++.+. |++..++++..+.+-.++++|++++||++||+ |||...
T Consensus 244 ~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~ 323 (448)
T COG2271 244 FVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM 323 (448)
T ss_pred HHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH
Confidence 322222222333333333333333678888999888776 99999999999999999999999999999996 677655
Q ss_pred hHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHH
Q psy17630 173 LISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSL 252 (372)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~ 252 (372)
.+.+.+....+++. ++.... .+.++..+++.+.++. -.+..-+.-....|+.|.+.-|++.|+...++.+
T Consensus 324 ~~i~~~~i~~~~~~---~w~~~~------~~~~l~~~~l~~iGf~-IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl 393 (448)
T COG2271 324 ALIFMLLITASLVL---YWLAPN------GSYLLDAILLFIIGFL-IYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYL 393 (448)
T ss_pred HHHHHHHHHHHHHH---HHcCCC------ccHHHHHHHHHHHHHH-HhhHHHHHHHHHhccccHhhccchhchhhhHHHH
Confidence 43332222222221 222111 1223333333333222 2222223335678999999999999999999999
Q ss_pred -HHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheec
Q psy17630 253 -IEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVV 323 (372)
Q Consensus 253 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 323 (372)
|...+.. ..+.+.+.+||...|.++.+.++++.++.....
T Consensus 394 ~Ga~~a~~-------------------------------~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 394 IGAALAGL-------------------------------PLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred hhHHhcCC-------------------------------cceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 5565555 666666778999888888777777766554333
No 14
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.73 E-value=8.4e-17 Score=151.67 Aligned_cols=165 Identities=13% Similarity=0.091 Sum_probs=106.9
Q ss_pred hHHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc--CCcchh-hHhhHHHHHHHHHHHHHHHHhhc
Q psy17630 120 INVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA--GRRPLL-LISDICMAICIGALGYYFYLLKL 195 (372)
Q Consensus 120 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~-~~~~~~~~~~~~~~~~~~~~~~~ 195 (372)
...+..+.|.+++ +.|++..+.+.......++..++.++.|+++||+ ++|+.. ....+...+....+... ..
T Consensus 259 ~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~- 334 (434)
T PRK11663 259 RAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM---PF- 334 (434)
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc---cc-
Confidence 3455667888875 4598988989999999999999999999999999 333332 22111111111111111 00
Q ss_pred cccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchh
Q psy17630 196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALG 275 (372)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (372)
. ............+.+ ..+..........|.+|++.|++++|+.+....++++++|.
T Consensus 335 ~------~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~---------------- 391 (434)
T PRK11663 335 A------SYVMQAACFFTIGFF-VFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGY---------------- 391 (434)
T ss_pred c------cHHHHHHHHHHHHHH-HhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcc----------------
Confidence 0 011111111222111 11111122245689999999999999999999999999999
Q ss_pred hhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630 276 VICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET 326 (372)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 326 (372)
..+.+.+..||+..|.+.++++++..+..+...+++
T Consensus 392 ---------------~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 427 (434)
T PRK11663 392 ---------------PLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQ 427 (434)
T ss_pred ---------------cHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 889999999998888888888877776655444433
No 15
>PRK09952 shikimate transporter; Provisional
Probab=99.73 E-value=4e-16 Score=147.17 Aligned_cols=167 Identities=12% Similarity=0.023 Sum_probs=103.4
Q ss_pred hHHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630 120 INVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (372)
Q Consensus 120 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
.+....+.|.+.+ +.|++...........++..+++.++.|+++||+|||+.+..+.++..++.+.+... ....+
T Consensus 266 ~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~-- 341 (438)
T PRK09952 266 MYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMA--LEAQS-- 341 (438)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--HHcCC--
Confidence 3445566676654 457666544445556677778889999999999999999887766555443332221 11111
Q ss_pred ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHH-HHHHHHHHhhccccCCcccccchhhh
Q psy17630 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGS-LIEFVVVKTVRHRFTPDVKGLALGVI 277 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (372)
..+..+....+.+++.+.. .+..+++++|.+|++.|+++.++.+..+. +++.++|.
T Consensus 342 ----~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~------------------ 398 (438)
T PRK09952 342 ----IFWIVFFSIMLANIAHDMV-VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPF------------------ 398 (438)
T ss_pred ----hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHH------------------
Confidence 1122222222222333322 23345788999999999999999776654 78888888
Q ss_pred hhhcchhhhhhhhhhHHHHHhc--ccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 278 CILGSLIEFVVVKTFDDVERAF--GTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+.+.+.+.. +|...+...+++++++.+..+ ..+|++
T Consensus 399 -------------i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~-~~~~~~ 436 (438)
T PRK09952 399 -------------IAAALVTYFGGSWHSVAIYLLAGCLISAMTAL-LMKDNQ 436 (438)
T ss_pred -------------HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-Hccccc
Confidence 777777754 365566666666666655544 456543
No 16
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.72 E-value=8.5e-16 Score=144.59 Aligned_cols=155 Identities=16% Similarity=0.122 Sum_probs=100.8
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP 170 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~ 170 (372)
+++++++++..+..... ....+. ..........+.|.+.++.|++..+.+.......++.+++.++.|++.||+|||+
T Consensus 220 ~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~ 297 (426)
T PRK12307 220 SMKGLFNRAQFPLTLCV-FIVLFS-IFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK 297 (426)
T ss_pred HHHHHHhhchHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 46677777644332222 222211 1112233456778888888888888888888889999999999999999999999
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhh-cccccccceeeeccCCCcchhhhHHHHHHHH
Q psy17630 171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVF-SVGFGPIPGVMMGELFTPDVKGLALGVICIL 249 (372)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 249 (372)
.+..+.++..+..+..... ... ... ......++.+. ..+..+....++.|.+|++.|++++|+.+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~---~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 365 (426)
T PRK12307 298 TFSIGLLMSFLFIFPLFRI---PQD--------NYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNL 365 (426)
T ss_pred HHHHHHHHHHHHHHHHHHH---ccc--------cHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHH
Confidence 8887776665544333211 110 111 12222222221 2233333446778999999999999999999
Q ss_pred HHHHHHHHHH
Q psy17630 250 GSLIEFVVVK 259 (372)
Q Consensus 250 ~~~~~~~~~~ 259 (372)
..+++.++|.
T Consensus 366 ~~~~~~~gp~ 375 (426)
T PRK12307 366 AATSGTFNSM 375 (426)
T ss_pred HhHHHHHHHH
Confidence 9999999998
No 17
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.72 E-value=8.7e-16 Score=145.53 Aligned_cols=241 Identities=13% Similarity=0.075 Sum_probs=136.0
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhH-HH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSL-VE 94 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 94 (372)
||+.|++. +++.++..++..+++||+|+....+ +.++.++ +.+ ++. ++..+++.+.+..+ ..
T Consensus 186 w~~~f~i~---~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~------~~~----~~~---~~~~~~~~~~~~~~~~~ 248 (452)
T PRK11273 186 WHAALYMP---AFAAILVALFAFAMMRDTPQSCGLP-PIEEYKN------DYP----DDY---NEKHEQELTAKQIFMQY 248 (452)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHccCCHhhcCCC-Chhhhhh------ccc----ccc---ccccCCCccHHHHHHHH
Confidence 99999998 7777776777788889988642111 1111000 000 000 00000000001111 22
Q ss_pred HHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc--CCcch
Q psy17630 95 IYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA--GRRPL 171 (372)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~ 171 (372)
+++++..|...+...+.. ...+....+.|.++++ .|++..+.+....+..++.+++.+++|+++||+ +||..
T Consensus 249 ~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~ 323 (452)
T PRK11273 249 VLPNKLLWYIAIANVFVY-----LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 323 (452)
T ss_pred HHcChHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcch
Confidence 445543332222222211 1234556788888876 488888888888888899999999999999999 45543
Q ss_pred hhH-hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHH
Q psy17630 172 LLI-SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG 250 (372)
Q Consensus 172 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 250 (372)
..+ ...+..++.+.+ ...... +.+.........+.... +.......+..|.+|++.||+++|+.+...
T Consensus 324 ~~~~~~~l~~~~~~~~----~~~~~~------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 392 (452)
T PRK11273 324 TGVFFMTLVTIATIVY----WLNPAG------NPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFG 392 (452)
T ss_pred HHHHHHHHHHHHHHHH----HHhccc------ChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHHH
Confidence 222 222222222111 111110 11222222222222111 111122245679999999999999999888
Q ss_pred HHHHHH-HHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630 251 SLIEFV-VVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 251 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 320 (372)
.+++.+ +|. +.+.+.+..||+..|++.+++++++++...
T Consensus 393 ~~g~~~~g~~-------------------------------v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 393 YLGGSVAASA-------------------------------IVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHhhhh-------------------------------hHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 888765 677 888888999998899888888777766655
No 18
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.71 E-value=1.3e-15 Score=146.32 Aligned_cols=148 Identities=14% Similarity=0.058 Sum_probs=104.7
Q ss_pred HHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccc
Q psy17630 123 VIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (372)
Q Consensus 123 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
...+.|.+++ +.|++..+.+...+...++.+++.++.|+++||+|||+.+..+.++..+..+..... .. .
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~-~----- 364 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI---GG-A----- 364 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc---cc-c-----
Confidence 4567788875 678999999999999999999999999999999999998887765555443332111 00 0
Q ss_pred cccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhc
Q psy17630 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILG 281 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (372)
..+......... .+.+.+..+....++.|.+|++.|++++++.+....+++.++|.
T Consensus 365 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~---------------------- 420 (496)
T PRK03893 365 -NVWVLGLLLFFQ-QMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPI---------------------- 420 (496)
T ss_pred -HHHHHHHHHHHH-HHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHH----------------------
Confidence 111111111111 12222333344467789999999999999999999999999998
Q ss_pred chhhhhhhhhhHHHHHhcccchhhHHHHHHH
Q psy17630 282 SLIEFVVVKTFDDVERAFGTGVAFGTFAVYC 312 (372)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 312 (372)
+.+.+.+..|++..+...+..+
T Consensus 421 ---------l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 421 ---------LGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred ---------HHHHHhccCChHHHHHHHHHHH
Confidence 8888888888877665555443
No 19
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.71 E-value=8.1e-16 Score=143.78 Aligned_cols=127 Identities=12% Similarity=0.080 Sum_probs=93.1
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
.+....+.|.+.++.|++..+.+.......++.+++.++.|+++||+|||+.+..+.+...++.+.+... .
T Consensus 236 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~---- 306 (406)
T PRK11551 236 LYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA-----P---- 306 (406)
T ss_pred HHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-----C----
Confidence 3455667888888889999999999999999999999999999999999998877655555444433221 0
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+.+...+.....+.+.. +..+..+++..|.+|++.|+++.++.+....++++++|.
T Consensus 307 ---~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~ 362 (406)
T PRK11551 307 ---SFAGMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPL 362 (406)
T ss_pred ---cHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhh
Confidence 12222222233333222 233444578899999999999999999999999999998
No 20
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.70 E-value=5.9e-16 Score=143.55 Aligned_cols=260 Identities=17% Similarity=0.175 Sum_probs=149.8
Q ss_pred eechhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHH
Q psy17630 3 VSGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELD 76 (372)
Q Consensus 3 ~~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 76 (372)
.+|.++++.++.. ||+.|++. +++.++..++..+.+||+|+... +.+.++.....++...+
T Consensus 128 ~~g~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------- 194 (399)
T TIGR00893 128 GLGGIIGGPLVGWILIHFSWQWAFIIE---GVLGIIWGVLWLKFIPDPPQKAK-WLTEEEKYIVVGGLLAE--------- 194 (399)
T ss_pred hHHHHHHHHHHHHHHHhCCchHHHHHH---HHHHHHHHHHhhheecCCCCccc-cCCHHHHhhcchhhccc---------
Confidence 3455666555543 99999998 77777766666777788764110 00111100000000000
Q ss_pred HHHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHH
Q psy17630 77 ELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIM 155 (372)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 155 (372)
.+..+++++.+.+.++.+++++.+...+.. ............+.|.+.++ .|.+..+.+.......++.+++
T Consensus 195 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (399)
T TIGR00893 195 --QQGKGPSTPKKYQIKELLKDRRVWGLALGQ-----FLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIG 267 (399)
T ss_pred --cccccccCCCccchHHHhcCHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHH
Confidence 000011112233466777765333222221 22222244556677777655 5888888899999999999999
Q ss_pred HHHHHHHHhhcCCcchhhH-hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCC
Q psy17630 156 TFFSSLLVDKAGRRPLLLI-SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF 234 (372)
Q Consensus 156 ~~~~g~l~dr~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 234 (372)
.++.|+++||++||+.... ......++.+............ ...+..+. ..... +.+.+..+..+.+..|.+
T Consensus 268 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~ 340 (399)
T TIGR00893 268 MILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYV-----NIPYAALA-LVALG-FFGLGAGAIGWALISDNA 340 (399)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccc-----hhHHHHHH-HHHHH-HhchhhhhHHHHHHHhhc
Confidence 9999999999999962111 1111111111111111111100 01122222 22222 222234566668899999
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHH
Q psy17630 235 TPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCI 313 (372)
Q Consensus 235 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~ 313 (372)
|++.|+++.++.+....+++.++|. +.+.+.+..| ++..+.+.+++.+
T Consensus 341 ~~~~~g~~~~~~~~~~~~g~~~~~~-------------------------------i~g~l~~~~g~~~~~~~~~~~~~~ 389 (399)
T TIGR00893 341 PGNIAGLTGGLINSLGNLGGIVGPI-------------------------------VIGAIAATTGSFAGALMVVAALAL 389 (399)
T ss_pred ChhHHHHHHHHHHHHHHHhhhhhhH-------------------------------HhhhhccCCCchhHHHHHHHHHHH
Confidence 9999999999999999999999998 8888888888 8778877777776
Q ss_pred HHHhhhh
Q psy17630 314 IGTFFVY 320 (372)
Q Consensus 314 ~~~~~~~ 320 (372)
++.+..+
T Consensus 390 ~~~~~~~ 396 (399)
T TIGR00893 390 IGALSYL 396 (399)
T ss_pred HHHHHHH
Confidence 6665543
No 21
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.70 E-value=7e-16 Score=146.79 Aligned_cols=159 Identities=13% Similarity=0.002 Sum_probs=107.1
Q ss_pred hHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630 120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (372)
Q Consensus 120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
......+.|.++++ .|++..+.++......++.+++.+++|+++||+|||+.+........++...+.. ....
T Consensus 274 ~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~---~~~~--- 347 (467)
T PRK09556 274 RIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVY---QHAT--- 347 (467)
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH---HhcC---
Confidence 44567788887755 6999888889988899999999999999999999998776554433332211111 1111
Q ss_pred ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHH-HHHHHHHhhccccCCcccccchhhh
Q psy17630 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSL-IEFVVVKTVRHRFTPDVKGLALGVI 277 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (372)
+.+...+..+..+... .+..........|.+|++.||++.|+.+..+++ +++++|.
T Consensus 348 ----~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~------------------ 404 (467)
T PRK09556 348 ----SEYMYLASLFALGFLV-FGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKV------------------ 404 (467)
T ss_pred ----cHHHHHHHHHHHHHHH-hhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhh------------------
Confidence 1222223333332221 121112124557999999999999999999987 6688888
Q ss_pred hhhcchhhhhhhhhhHHHHH------------hcccchhhHHHHHHHHHHHhhhh
Q psy17630 278 CILGSLIEFVVVKTFDDVER------------AFGTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~~~~~~~~~ 320 (372)
+.+.+.+ ..+|+..|.+.+++.+++.+...
T Consensus 405 -------------~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 405 -------------GLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred -------------hHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 7787777 56788888888777777665544
No 22
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.70 E-value=1e-15 Score=141.11 Aligned_cols=221 Identities=13% Similarity=0.039 Sum_probs=142.0
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (372)
||+.|++. ++++++..+..+++++|.|+. +.+ ++.+. ++++.+.++.
T Consensus 155 ~~~~f~~~---~~~~~~~~~~~~~~~~~~~~~---~~~-------------~~~~~--------------~~~~~~~~~~ 201 (377)
T TIGR00890 155 VPAAFIYM---GIIFLLVIVLGAFLIGYPPGQ---LIK-------------TNIEV--------------SVKDYTVWEM 201 (377)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHheecCchh---ccc-------------cCccc--------------chhhhhHHHH
Confidence 99999999 777777666666677665431 000 00000 0011124556
Q ss_pred HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHh
Q psy17630 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLIS 175 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 175 (372)
++++..+.... ....... .......+.+.+.++.|.+..+.+.......++.+++.++.|+++||+|||+.+..+
T Consensus 202 ~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~ 276 (377)
T TIGR00890 202 LRTPQFWVLYL-SFFLNAV----SGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIV 276 (377)
T ss_pred HcCccHHHHHH-HHHHHhH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 66654332222 1111111 122233344556677787777788888899999999999999999999999998888
Q ss_pred hHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHH
Q psy17630 176 DICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEF 255 (372)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~ 255 (372)
.++..++.+.+... .. ...........+.+.+.+... +....++.|.+|+++|+++.++.+....+++.
T Consensus 277 ~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~ 345 (377)
T TIGR00890 277 FGISAVGMAAMLFI---PM-------LNDVLFLATVALVFFTWGGTI-SLFPSLVSDIFGPANSAANYGFLYTAKAVAGI 345 (377)
T ss_pred HHHHHHHHHHHHHc---cc-------chhHHHHHHHHHHHHHhccch-hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHH
Confidence 77777766554332 10 011122222333333333322 23336788999999999999999999999999
Q ss_pred HHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHH
Q psy17630 256 VVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT 316 (372)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 316 (372)
++|. +.+.+.+..||+..+.+.+++++++.
T Consensus 346 ~~~~-------------------------------~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 346 FGGL-------------------------------IASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHH-------------------------------HHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 9999 88888888999888887777666544
No 23
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.70 E-value=9.8e-16 Score=143.76 Aligned_cols=169 Identities=11% Similarity=0.057 Sum_probs=122.7
Q ss_pred HHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 122 VVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 122 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
....+.|.+.++ .|.+..+.++......++.+++.++.+++.||.++++.+..+..+.+++.+.+... +
T Consensus 241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~----- 310 (417)
T PRK10489 241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-----P----- 310 (417)
T ss_pred hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-----c-----
Confidence 344567777777 68888889999999999999999999999999887777777766665555443222 0
Q ss_pred ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL 280 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (372)
+.+.......+.+.+.+. ..+...+++.|..|++.|++++++.+....++..+++.
T Consensus 311 --~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~--------------------- 366 (417)
T PRK10489 311 --MWILAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAA--------------------- 366 (417)
T ss_pred --hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHH---------------------
Confidence 122223333333333322 22344467789999999999999999999999999999
Q ss_pred cchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCCCCHHHH
Q psy17630 281 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQI 334 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 334 (372)
+.+.+.+..|.+..+.+.+++.++..++.+...|++++++.+|.
T Consensus 367 ----------l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (417)
T PRK10489 367 ----------LLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPP 410 (417)
T ss_pred ----------HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 89999998898888887777777766666667788776655443
No 24
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.68 E-value=2.2e-15 Score=138.39 Aligned_cols=228 Identities=14% Similarity=0.143 Sum_probs=133.8
Q ss_pred echhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHH
Q psy17630 4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE 77 (372)
Q Consensus 4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 77 (372)
+|..+++.++.. ||+.|++. ++++++..++.++++||+|++. ++. .+. ++
T Consensus 125 lG~~l~~~~~~~l~~~~gWr~~f~~~---~~l~~~~~~~~~~~lp~~p~~~---~~~--------------~~~----~~ 180 (368)
T TIGR00903 125 LGIIFALAAGLKIYTAGGLQLLIIPI---AAVAAAGIILVLAALPALPFQA---AEG--------------FGF----KD 180 (368)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHH---HHHHHHHHHHHHHHcCCCCCCC---CCC--------------cch----HH
Confidence 455555555444 99999998 7888887778888999998642 100 000 00
Q ss_pred HHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHH
Q psy17630 78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTF 157 (372)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 157 (372)
...+++++++++..+...+. .++.....+.+..|+|.++++.|++.. .+.......+.+. +
T Consensus 181 ----------~~~~~~~ll~~~~~~~~~~~-----~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~---~ 241 (368)
T TIGR00903 181 ----------AVKEFGALAGRKDLWIIGAI-----LGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGL---I 241 (368)
T ss_pred ----------HHHHHHHHHcChhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHH---H
Confidence 00135678887644333222 222233356677899999988887653 4444444444444 4
Q ss_pred HHHHHHhhcCCc---chhhH-hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccC
Q psy17630 158 FSSLLVDKAGRR---PLLLI-SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL 233 (372)
Q Consensus 158 ~~g~l~dr~grr---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 233 (372)
..++++||..|| +.... ...+.++........ . ..+..+....+.+++ .....+..+++.+|.
T Consensus 242 g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~-----~-------~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 308 (368)
T TIGR00903 242 GVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE-----L-------NRLALFAFIGIAGLL-MLPAYAIIMDWIGKF 308 (368)
T ss_pred HHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc-----c-------ccHHHHHHHHHHHHh-hhhhHHHHHHHHHHh
Confidence 457888887654 33222 222222222221111 0 122222233323222 222333455788999
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHH
Q psy17630 234 FTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCI 313 (372)
Q Consensus 234 ~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 313 (372)
+|++.|+++.|+.+..+++++..+|. ..+.+.. +....|.++++..+
T Consensus 309 ~p~~~rgt~~G~~~~~g~~~~~~~~~-------------------------------~~~~~~~--~~~~~f~~~~~~~~ 355 (368)
T TIGR00903 309 CDKELHGKAAGAIGFTSRAISVALAL-------------------------------AAMLFIS--SAEAYFTFLAILIT 355 (368)
T ss_pred cchhhcCcccchhhHHHHHHHHHHHH-------------------------------HHHHHhc--CHHHHHHHHHHHHH
Confidence 99999999999999999999999888 5555542 54557777777777
Q ss_pred HHHhhhh
Q psy17630 314 IGTFFVY 320 (372)
Q Consensus 314 ~~~~~~~ 320 (372)
++.+...
T Consensus 356 i~~~~~~ 362 (368)
T TIGR00903 356 IAFAIAL 362 (368)
T ss_pred HHHHHHH
Confidence 7766654
No 25
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.68 E-value=9.3e-16 Score=144.79 Aligned_cols=251 Identities=13% Similarity=0.079 Sum_probs=143.2
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhh-HHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKS-LVE 94 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 94 (372)
||+.|++. +++.++..++.++++||+|+....+ +.++ .+++..+ +..++ .+.+.+.+.. ...
T Consensus 184 w~~~f~~~---~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~--~~~~~----~~~~~~~~~~~~~~ 246 (438)
T TIGR00712 184 WHAALYFP---AICAIIVALFAFAMMRDTPQSCGLP-PIEE-------YRNDYPD--DYNEK----AEQELTAKEIFMQY 246 (438)
T ss_pred hHHHHHHH---HHHHHHHHHHHHHhccCCHHhcCCC-Cchh-------ccccccc--ccccc----cccccchHHHHHHH
Confidence 99999998 7777776667778889988632100 0000 0000000 00000 0000000111 123
Q ss_pred HHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhh
Q psy17630 95 IYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLL 173 (372)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~ 173 (372)
+++++..+...+...+. ....+....+.|.++++. |++..+.++...+..+..+++.+++|+++||+++++...
T Consensus 247 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~ 321 (438)
T TIGR00712 247 VLPNKLLWYIAIANVFV-----YLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGA 321 (438)
T ss_pred HccCchHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccH
Confidence 55665333332222221 122345667888888764 888888899889999999999999999999997544333
Q ss_pred HhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHH
Q psy17630 174 ISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLI 253 (372)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~ 253 (372)
.+.....+..+.... ....... +.+.........+.+. .+..........|.+|++.|++++|+.+..+.++
T Consensus 322 ~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 393 (438)
T TIGR00712 322 TGVFFMTLVTIAVIV-YWMNPAG------NPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG 393 (438)
T ss_pred HHHHHHHHHHHHHHH-HHhcCCC------chHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhh
Confidence 333222221111111 1111110 1122222222222211 1111111235679999999999999999888877
Q ss_pred H-HHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 254 E-FVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 254 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+ +++|. +.+.+.+..|+...+.+.+++++++.+..++++||.|
T Consensus 394 g~~~gp~-------------------------------l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 394 GSVAASA-------------------------------IVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhhhcch-------------------------------hHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5 57888 8888888889988888888888888777777777754
No 26
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.67 E-value=7.5e-15 Score=138.36 Aligned_cols=193 Identities=15% Similarity=0.160 Sum_probs=110.9
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (372)
||+.|++. +++.++ .+..+..+||+|++.. + + .+++.+++++
T Consensus 197 Wr~~F~i~---~~~~ll-~~~~~~~~~e~~~~~~------~--~--------------------------~~~~~~~~~l 238 (432)
T PRK10406 197 WRIPFALG---AVLAVV-ALWLRRQLDETSQQET------R--A--------------------------LKEAGSLKGL 238 (432)
T ss_pred hHHHHHHH---HHHHHH-HHHHHhcCCCCchHHH------h--h--------------------------hcccccHHHH
Confidence 99999998 565554 4556677899875310 0 0 0011245667
Q ss_pred HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 174 (372)
+++++.+. ... .........++....|.|.++++ .|++..+.+.......+...++.++.|+++||+|||+.+..
T Consensus 239 ~~~~~~~~---~~~-~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~ 314 (432)
T PRK10406 239 WRNRRAFI---MVL-GFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLC 314 (432)
T ss_pred HhhHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 76542221 111 11111122245566778887755 58887777777777788888889999999999999998776
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHH-
Q psy17630 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLI- 253 (372)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~- 253 (372)
+.++.++....+... ..... .....+....+.....+. ..+..+.+.+|.+|++.|++++|+.+..++..
T Consensus 315 ~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~ 385 (432)
T PRK10406 315 FGSLAALFTVPILSA--LQNVS------SPYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQVRALGVGLSYAVANALF 385 (432)
T ss_pred HHHHHHHHHHHHHHH--HHcCC------cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHH
Confidence 655443332221111 11110 112111111111112211 12234477899999999999999998876652
Q ss_pred HHHHHH
Q psy17630 254 EFVVVK 259 (372)
Q Consensus 254 ~~~~~~ 259 (372)
+...|.
T Consensus 386 g~~~p~ 391 (432)
T PRK10406 386 GGSAEY 391 (432)
T ss_pred HhHHHH
Confidence 334554
No 27
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.66 E-value=1.6e-14 Score=134.78 Aligned_cols=141 Identities=16% Similarity=0.045 Sum_probs=98.5
Q ss_pred HHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 122 VVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 122 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
....+.|.+.. +.|++..+.+.......++.+++.++.|+++||+|||+.+..+..+..+..+..... ..
T Consensus 256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~~----- 326 (405)
T TIGR00891 256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI----GA----- 326 (405)
T ss_pred hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh----CC-----
Confidence 33445566554 468888889999999999999999999999999999998887766543322221111 11
Q ss_pred ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL 280 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (372)
+.+.......+.+.... +..+....++.|.+|++.|++++|+.+....+++.++|.
T Consensus 327 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~--------------------- 382 (405)
T TIGR00891 327 --NVAVLGLGLFFQQMLVQ-GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPI--------------------- 382 (405)
T ss_pred --chHHHHHHHHHHHHHHc-cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHH---------------------
Confidence 12222222233333322 223344477899999999999999999999999999999
Q ss_pred cchhhhhhhhhhHHHHHhcc-cchhh
Q psy17630 281 GSLIEFVVVKTFDDVERAFG-TGVAF 305 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~g-~~~~~ 305 (372)
+.+.+.+..| |+..+
T Consensus 383 ----------~~g~l~~~~g~~~~~~ 398 (405)
T TIGR00891 383 ----------IGALLAQRLDEYGTAL 398 (405)
T ss_pred ----------HHHHHHHhccccchhH
Confidence 8999999888 64433
No 28
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.66 E-value=7.8e-15 Score=135.52 Aligned_cols=229 Identities=9% Similarity=0.039 Sum_probs=140.7
Q ss_pred echhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHH
Q psy17630 4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE 77 (372)
Q Consensus 4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 77 (372)
+|..+++.++.. ||+.|++. +++.++..++.++++||+|+... ++ +
T Consensus 136 ~g~~ig~~~~~~l~~~~~~~~~f~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~----------~---------- 187 (375)
T TIGR00899 136 LAWVIGPPLAFWLALGFGFTVMFLTA---ALAFVLCGVLVWLFLPSYPRGAP-----GA----------L---------- 187 (375)
T ss_pred HHHHHhhhHHHHHHHhcccHHHHHHH---HHHHHHHHHHHHHhCCCcccCcc-----cc----------c----------
Confidence 445555544433 99999999 77766666666677899774210 00 0
Q ss_pred HHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHH
Q psy17630 78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMT 156 (372)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 156 (372)
++.+.++.++++..+......+..... ......+.|.+. ++.|.+..+.+...........++.
T Consensus 188 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 252 (375)
T TIGR00899 188 ----------TRLEVRGLLASRDTRLLFVACTLMWGC-----NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFM 252 (375)
T ss_pred ----------CcchhhhhhcCcchHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 000112244444333222222211111 222334455554 4568888888887777777788889
Q ss_pred HHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCc
Q psy17630 157 FFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP 236 (372)
Q Consensus 157 ~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 236 (372)
++.|++.||+|||+.+..+.++..+........ . +.+.......+.+.+.+.. .+....+..|..|+
T Consensus 253 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~ 319 (375)
T TIGR00899 253 LLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD----N--------SLWALLMLQLLNAIFIGIL-AGIGMLYFQDLMPG 319 (375)
T ss_pred HhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH----H--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcc
Confidence 999999999999998877765544433322111 1 1222333333333333322 23344667888876
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHH
Q psy17630 237 DVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT 316 (372)
Q Consensus 237 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 316 (372)
+ |++++++.+...+++..++|. +.+.+.+..|++..+++.+++++++.
T Consensus 320 ~-~~~~~~~~~~~~~~g~~~g~~-------------------------------~~g~~~~~~g~~~~~~~~~~~~~~~~ 367 (375)
T TIGR00899 320 R-AGAATTLYTNTGRVGWIIAGS-------------------------------VGGILAERWSYHAVYWFAIVMLIVAL 367 (375)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHhccchhHHHHHHHHHHHHH
Confidence 4 679999999999999999998 88888888899888888887777776
Q ss_pred hhhh
Q psy17630 317 FFVY 320 (372)
Q Consensus 317 ~~~~ 320 (372)
+...
T Consensus 368 ~~~~ 371 (375)
T TIGR00899 368 FCLL 371 (375)
T ss_pred HHHh
Confidence 6543
No 29
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.66 E-value=5.8e-15 Score=138.29 Aligned_cols=193 Identities=12% Similarity=0.091 Sum_probs=128.3
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCC--------CChhhHHHHHHHHHHHHHHHHHHHH
Q psy17630 92 LVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKI--------ISPNYGQNIVGFIQVIMTFFSSLLV 163 (372)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~ 163 (372)
.++++|+++++...+..++.... ......+.+.+.++.|.+. ...+...+...+..+++.++.|+++
T Consensus 201 ~~~~~k~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~ 275 (418)
T TIGR00889 201 AFILFKNKRMAIFFFFSMLLGAP-----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFL 275 (418)
T ss_pred HHHHhcCCCeeeHHHHHHHHHhH-----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777554433333332221 1223345566666665443 4557888888889999999999999
Q ss_pred hhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHH
Q psy17630 164 DKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLAL 243 (372)
Q Consensus 164 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 243 (372)
||+|||+++..+.++.+++...+... ... ....+..++...+.+.+.+... +....++.|.+|++.|++++
T Consensus 276 dr~g~r~~l~~~~~~~~v~~~l~~~~----~~~----~~~~~~l~l~~~l~g~~~~~~~-~~~~~~i~~~~p~~~~g~~~ 346 (418)
T TIGR00889 276 KRFGIKKVMLLSLVAWALRFGFFAYG----DPE----YFGYALLFLSMIVYGCAFDFFN-ISGSVFVEKEVPVHIRASAQ 346 (418)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHc----Ccc----hhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHH
Confidence 99999999999988777765544331 000 0001222333344444433322 33336789999999999999
Q ss_pred HHHH-HHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhc------ccchhhHHHHHHHHHHH
Q psy17630 244 GVIC-ILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF------GTGVAFGTFAVYCIIGT 316 (372)
Q Consensus 244 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~ 316 (372)
++.+ ....++..++|. +.+.+.+.. ||+..|.+.+++.++..
T Consensus 347 g~~~~~~~~lg~~iGp~-------------------------------l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~ 395 (418)
T TIGR00889 347 GLFTLMCNGFGSLLGYI-------------------------------LSGVMVEKMFAYGTFDWQTMWLFFAGYIAILA 395 (418)
T ss_pred HHHHHHHHhhHHHHHHH-------------------------------HHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Confidence 9997 567788999998 888887773 58888888888888888
Q ss_pred hhhheeccCCCCC
Q psy17630 317 FFVYFVVPETKNK 329 (372)
Q Consensus 317 ~~~~~~~~e~~~~ 329 (372)
++.++++||+++.
T Consensus 396 ~l~~~~~~~~~~~ 408 (418)
T TIGR00889 396 VLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHhCCcccC
Confidence 8877788877543
No 30
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.65 E-value=3.6e-15 Score=140.04 Aligned_cols=147 Identities=12% Similarity=0.102 Sum_probs=103.8
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHH
Q psy17630 135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIY 214 (372)
Q Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (372)
+.+..+.+.......+..+++.+++|+++||+|||+.+..+.++.++..+...+. .+.+..+....+.
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~------------~~~~~~~~~~~l~ 325 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA------------TGPLEVSILKLLH 325 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc------------ccHHHHHHHHHHH
Confidence 4455566788888888899999999999999999999888877777665554332 1123333333333
Q ss_pred HHhhcccccccceeeeccCCCcchhhhHHHH-HHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhH
Q psy17630 215 IIVFSVGFGPIPGVMMGELFTPDVKGLALGV-ICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFD 293 (372)
Q Consensus 215 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (372)
+...+.... ....++.|.+|++.|++..+. .+....++.++++. +.+
T Consensus 326 g~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~-------------------------------~~G 373 (420)
T PRK09528 326 AFEVPFLLV-GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLST-------------------------------LAG 373 (420)
T ss_pred HHHHHHHHH-HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHH-------------------------------HHH
Confidence 333322222 223677888999999887665 46677888899998 889
Q ss_pred HHHHhcccchhhHHHHHHHHHHHhhhheeccC
Q psy17630 294 DVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE 325 (372)
Q Consensus 294 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e 325 (372)
.+.+..||+..|.+.+++.++..++.++..++
T Consensus 374 ~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 374 NLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999988888877776665544443
No 31
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.65 E-value=2.8e-15 Score=140.29 Aligned_cols=236 Identities=13% Similarity=0.079 Sum_probs=133.8
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChh---HHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPV---YLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSL 92 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~---~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (372)
||+.|++. +++.++..++.++++||+|+ |+.+ ++.+...++.+.++.+.++.....+ +.+...+..+
T Consensus 167 wr~~f~~~---~~~~l~~~~~~~~~~~~~p~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 236 (412)
T TIGR02332 167 WQWLFLLE---GFPSVILGVMTWFWLDDSPDKAKWLDE----EDKKALKEMIDNDQLTLEQPEGAFA---HAAMPQRSML 236 (412)
T ss_pred hhHHHHHH---HHHHHHHHHHHhhccCCCcccCCCCCH----HHHHHHHHHHHhccccccccccccc---cccccHHHHH
Confidence 99999998 78877777778888999985 2211 1111111111111100000000000 0000011123
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc--CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy17630 93 VEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT--NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP 170 (372)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~ 170 (372)
++++ ++.. +...+...+.....+.+..|.|.++++. +++..+.+.......++.+++.++.|+++||++||+
T Consensus 237 ~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~ 310 (412)
T TIGR02332 237 REIF-TPAI-----MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK 310 (412)
T ss_pred HHhc-ChHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH
Confidence 3333 2322 2222222333334566778999999875 567777888889999999999999999999999877
Q ss_pred hh-hHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHH
Q psy17630 171 LL-LISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL 249 (372)
Q Consensus 171 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 249 (372)
.. ....++..+.. .+... ... ....+........+.. ...+..+....|.+|++.|+++.|+.+..
T Consensus 311 ~~~~~~~~~~~~~~-~~~~~----~~~-------~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a~g~~~~~ 377 (412)
T TIGR02332 311 HHTALPYLFAAAGW-LLASA----TDH-------NLIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIAIAVINAT 377 (412)
T ss_pred HHHHHHHHHHHHHH-HHHHh----cCC-------HHHHHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHHHHHHHHh
Confidence 53 33333333222 11111 111 1111111222211211 11233335557889999999999999999
Q ss_pred HHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHH
Q psy17630 250 GSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVY 311 (372)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~ 311 (372)
++++++++|. +.+.+.+..| |...+++.+++
T Consensus 378 ~~~g~~~~p~-------------------------------~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 378 GNIGSALSPF-------------------------------LIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred hhhhhhhhhh-------------------------------hcccccccCCCCchhHHHHHHH
Confidence 9999999998 8888888775 77677665554
No 32
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.65 E-value=6.5e-15 Score=137.06 Aligned_cols=158 Identities=9% Similarity=0.038 Sum_probs=104.9
Q ss_pred HHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 122 VVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 122 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
....+.|.+.+ +.|.+..+.+.......++.+++.++.|+++||+|||+.+..+.....+........ ++
T Consensus 234 ~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~---- 304 (393)
T PRK15011 234 LYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA-----HS---- 304 (393)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-----hh----
Confidence 34456776665 458888888888777778888899999999999999998776655444332222111 11
Q ss_pred ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL 280 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (372)
.+..+....+.....+...+.. ..+..|.+|+ .|++++++.+...+++..+++.
T Consensus 305 ---~~~~l~~~~l~~~~~g~~~~~~-~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~--------------------- 358 (393)
T PRK15011 305 ---PAILLGLQLLNAIYIGILGGIG-MLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGS--------------------- 358 (393)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHH---------------------
Confidence 2222222222222222222222 2556888885 5899999988888999999998
Q ss_pred cchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccC
Q psy17630 281 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE 325 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e 325 (372)
+.+.+.+..+|+..+.+.+++.+++.++.+ +.||
T Consensus 359 ----------l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 392 (393)
T PRK15011 359 ----------LAGIVAEIWNYHAVFWFALVMIIATLFCLL-RIKD 392 (393)
T ss_pred ----------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hhcC
Confidence 888888888998888777777776665544 4454
No 33
>PRK03545 putative arabinose transporter; Provisional
Probab=99.65 E-value=1.8e-14 Score=133.91 Aligned_cols=218 Identities=13% Similarity=0.038 Sum_probs=137.0
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (372)
||+.|++. +++.++..++.+..+||.|+ + +.+ ..++.++.
T Consensus 162 w~~~f~~~---~~~~~l~~~~~~~~~~~~~~----~-~~~--------------------------------~~~~~~~~ 201 (390)
T PRK03545 162 WRTTFLAI---GGGALITLLLLIKLLPLLPS----E-HSG--------------------------------SLKSLPLL 201 (390)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHhCCCCCC----C-Ccc--------------------------------hHHHHHHH
Confidence 99999999 77777655566666777542 0 000 00123456
Q ss_pred HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 174 (372)
++++..+......++.... ......+.+.+.++ .|.+..+.+.......++.+++.++.|+++||++||... .
T Consensus 202 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~ 275 (390)
T PRK03545 202 FRRPALVSLYLLTVVVVTA-----HFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-I 275 (390)
T ss_pred HhCcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-H
Confidence 7776444333222221111 22223444555554 588888889998999999999999999999999988654 3
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHH
Q psy17630 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE 254 (372)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 254 (372)
+..+..++....... .+ +.+.......+.+.+.. ...+.....+.|..| +.|++++++.+....++.
T Consensus 276 ~~~~~~~~~~~l~~~----~~-------~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~ 342 (390)
T PRK03545 276 AIALLLVCLLLLLPA----AN-------SEWHLSVLSIFWGIAIM-CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGI 342 (390)
T ss_pred HHHHHHHHHHHHHHH----hc-------hHHHHHHHHHHHHHHHh-cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHH
Confidence 433333333222111 01 12233333333333332 222223355667766 578999999999999999
Q ss_pred HHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheec
Q psy17630 255 FVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVV 323 (372)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 323 (372)
.++|. +.+.+.+..|++..+.+.+++.+++.+..+...
T Consensus 343 ~~G~~-------------------------------~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 343 GAGAL-------------------------------LGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHH-------------------------------HHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 99998 899999999999999888888888777665443
No 34
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.65 E-value=2e-14 Score=129.50 Aligned_cols=229 Identities=16% Similarity=0.196 Sum_probs=154.1
Q ss_pred echhhHHhhhhh--hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHH
Q psy17630 4 SGILYTYVIGSL--YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKE 81 (372)
Q Consensus 4 ~G~~~~~~i~~~--Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (372)
+|..+|..++.. ||+.|++. +.++++..+..+..+| |+-. +++
T Consensus 152 ~GvPLGt~ig~~~GWR~~F~~i---a~l~ll~~~~~~~~lP--~~~~--~~~---------------------------- 196 (394)
T COG2814 152 LGVPLGTFLGQLFGWRATFLAI---AVLALLALLLLWKLLP--PSEI--SGS---------------------------- 196 (394)
T ss_pred HhccHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHhCC--CccC--CCC----------------------------
Confidence 466666777766 99999999 8999998888899999 3200 000
Q ss_pred HHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHH
Q psy17630 82 LDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSS 160 (372)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g 160 (372)
.+.+..+..+.+|+|+.+.......+.. .+.+....|...+++ ..|++....++....++++.++|+.+.|
T Consensus 197 ---~~~~~~~~~~~l~~p~v~~~l~~t~l~~-----~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gG 268 (394)
T COG2814 197 ---LPGPLRTLLRLLRRPGVLLGLLATFLFM-----TGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGG 268 (394)
T ss_pred ---CCcchhHHHHHhcCchHHHHHHHHHHHH-----cchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHh
Confidence 0011123466778875554444433322 234444445555555 5599999999999999999999999999
Q ss_pred HHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhh
Q psy17630 161 LLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG 240 (372)
Q Consensus 161 ~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 240 (372)
+++|| +.|+.+.....+..+..+.+.+. . .+.+..+....+.++.......... ...++ .-++.+.
T Consensus 269 rl~dr-~~~~~l~~~~~l~a~~~l~l~~~----~-------~~~~~~~~~~~~wg~a~~~~~~~~~-~~~a~-~~p~~~~ 334 (394)
T COG2814 269 RLADR-GPRRALIAALLLLALALLALTFT----G-------ASPALALALLFLWGFAFSPALQGLQ-TRLAR-LAPDAAD 334 (394)
T ss_pred hhccc-cchhHHHHHHHHHHHHHHHHHHh----c-------chHHHHHHHHHHHHHHhhhhhhHHH-HHhcc-cCCCchH
Confidence 99999 88888888777777766664433 1 1123333333333222222222111 33445 3357889
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630 241 LALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 320 (372)
.+.++.....+++...+.. +.+.+.++.|+....++.+.+.+++.++..
T Consensus 335 ~a~sl~~aa~nlgia~GA~-------------------------------lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~ 383 (394)
T COG2814 335 LAGSLNVAAFNLGIALGAA-------------------------------LGGLVLDALGYAATGWVGAALLLLALLLAL 383 (394)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 888899999998888888888777776655
No 35
>PRK15075 citrate-proton symporter; Provisional
Probab=99.64 E-value=1.3e-14 Score=136.77 Aligned_cols=132 Identities=13% Similarity=0.113 Sum_probs=85.1
Q ss_pred chHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccc
Q psy17630 119 GINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDE 197 (372)
Q Consensus 119 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (372)
.++....|.|.++++ .|++..+.++...+..++.+++.++.|+++||+|||+.+..+..+..+..... . .......
T Consensus 253 ~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~-~-~~~~~~~- 329 (434)
T PRK15075 253 SFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPA-L-SWLVAAP- 329 (434)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH-H-HHHHcCC-
Confidence 355677888988876 58888888888888889999999999999999999998877644433222111 1 0111111
Q ss_pred cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHH-HHHHHHH
Q psy17630 198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSL-IEFVVVK 259 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~ 259 (372)
..........+.+.+.+. ..+..+.+..|.+|++.|+++.++.+..+.. ++.++|.
T Consensus 330 -----~~~~~~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~ 386 (434)
T PRK15075 330 -----SFARMLAVELWLSFLYGS-YNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPA 386 (434)
T ss_pred -----chHHHHHHHHHHHHHHHH-HHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHH
Confidence 111111212222223322 2223336779999999999999997666554 4777888
No 36
>TIGR00895 2A0115 benzoate transport.
Probab=99.64 E-value=7e-15 Score=136.69 Aligned_cols=235 Identities=17% Similarity=0.192 Sum_probs=136.3
Q ss_pred echhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHH
Q psy17630 4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE 77 (372)
Q Consensus 4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 77 (372)
+|..+++.++.. ||+.|++. +++..+..++...++||+|++..++ +.++.++..++....+.+.+++ +
T Consensus 152 ~g~~~~~~~~~~l~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~ 225 (398)
T TIGR00895 152 IGAAVGGFLAGWLIPVFGWRSLFYVG---GIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--A 225 (398)
T ss_pred HHHHHHHHHHHHHhhcccceeehhhh---hhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--c
Confidence 344555544433 99999998 7777776777788899999876554 3344333333332211110000 0
Q ss_pred HHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHH
Q psy17630 78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTF 157 (372)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 157 (372)
..+....++..+...+.+++++ ..+.......... ...........+.|.+.++.|.+..+.+.......++.+++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (398)
T TIGR00895 226 LPEQKATQGTKRSVFKALFQGK-TARITVLLWLLYF-MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSI 303 (398)
T ss_pred ccccccccchhhHHHHHHhcch-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0000000011111122233332 2222222222222 2223345566778887888898888899999999999999999
Q ss_pred HHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcc
Q psy17630 158 FSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD 237 (372)
Q Consensus 158 ~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 237 (372)
+.|+++||+|||+... +..+..+...++... .. +.+.......+.+.+.+... +...+++.|.+|++
T Consensus 304 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~--------~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~ 370 (398)
T TIGR00895 304 IFGWLADRLGPRVTAL-LLLLGAVFAVLVGST---LF--------SPTLLLLLGAIAGFFVNGGQ-SGLYALMALFYPTA 370 (398)
T ss_pred HHHHHHhhcchHHHHH-HHHHHHHHHHHHHHH---hh--------CHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCHH
Confidence 9999999999994443 333333332222211 11 12233333444444444333 34457889999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q psy17630 238 VKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 238 ~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.|+++.++.+....++..++|.
T Consensus 371 ~~g~~~g~~~~~~~~g~~~g~~ 392 (398)
T TIGR00895 371 IRATGVGWAIGIGRLGAIIGPI 392 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887
No 37
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.64 E-value=9.2e-15 Score=136.81 Aligned_cols=181 Identities=12% Similarity=-0.061 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHH
Q psy17630 104 ATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI 183 (372)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~ 183 (372)
..+...++.+..+........+..|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.
T Consensus 8 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~ 87 (412)
T TIGR02332 8 RLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAS 87 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 34444444444444445666777788888899999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhcc
Q psy17630 184 GALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRH 263 (372)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 263 (372)
++.++. ++.+..++...+.+.+.+.. .+....++.|.+|+++|++++++.+....++..+++.
T Consensus 88 ~~~~~~------------~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~---- 150 (412)
T TIGR02332 88 TATMFA------------TGPESLYLLRILVGIAEAGF-LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLI---- 150 (412)
T ss_pred HHHHHh------------cCHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 776554 12334455555555555543 3444467899999999999999999988888888887
Q ss_pred ccCCcccccchhhhhhhcchhhhhhhhhhHHHHH------hcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 264 RFTPDVKGLALGVICILGSLIEFVVVKTFDDVER------AFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
+.+.+.+ ..|||+.|.+.++.+++..++.++++||+++
T Consensus 151 ---------------------------~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 151 ---------------------------LSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred ---------------------------HHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 5555543 3699999999888877776666667888754
No 38
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.64 E-value=8.3e-16 Score=136.86 Aligned_cols=182 Identities=10% Similarity=0.016 Sum_probs=153.4
Q ss_pred hhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHH
Q psy17630 101 TVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA 180 (372)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~ 180 (372)
++++.++..++........-..+..-.|.+.++.++|..|.+.+.+...+...++-++.|.++||.+.|..+.+++++++
T Consensus 26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsa 105 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSA 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHH
Confidence 44556666655555544445577888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHh
Q psy17630 181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKT 260 (372)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 260 (372)
+..+++++.. +...+.++..+.+.+.+.++.|.. -.+...+|+++||+..++.+...++|+.+.|.
T Consensus 106 i~nil~Gfs~------------s~~~~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~- 171 (448)
T COG2271 106 IVNILFGFSP------------SLFLFAVLWVLNGWFQGMGWPPCA-RTITHWFSRKERGTWWSIWNTSHNIGGALAPL- 171 (448)
T ss_pred HHHHHHhhhh------------HHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHcCccccCceEEEehhhhhcccchHHH-
Confidence 9999988762 245556666777788888888777 77799999999999999999999999999998
Q ss_pred hccccCCcccccchhhhhhhcchhhhhhhhhh--HHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630 261 VRHRFTPDVKGLALGVICILGSLIEFVVVKTF--DDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET 326 (372)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 326 (372)
+. ..+..+.+||..|++-++++++..++.++..+++
T Consensus 172 ------------------------------~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 172 ------------------------------VALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred ------------------------------HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 66 7777778999999999999998888887776654
No 39
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.63 E-value=2.1e-14 Score=141.33 Aligned_cols=144 Identities=17% Similarity=0.065 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHH
Q psy17630 103 KATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAIC 182 (372)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~ 182 (372)
+.+++.+.+..+........+...+|.+.+++|.+..+.+++.+...++.+++.+++|+++||+|||+.+++++++.+++
T Consensus 166 ~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~ 245 (742)
T TIGR01299 166 WALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFF 245 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 33333333333333333345666788888888999999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 183 IGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.++..+.. +.+.+++..++.+++.+... +...+++.|.+|++.|+..+++...+..+|.++++.
T Consensus 246 ~ll~afa~------------s~~~llv~R~l~G~g~g~~~-p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~ 309 (742)
T TIGR01299 246 AFFSSFVQ------------GYGFFLFCRLLSGFGIGGAI-PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAA 309 (742)
T ss_pred HHHHHHHh------------hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665431 13344555555555554433 556689999999999999999998888888877775
No 40
>TIGR00895 2A0115 benzoate transport.
Probab=99.62 E-value=4.9e-15 Score=137.71 Aligned_cols=171 Identities=12% Similarity=-0.003 Sum_probs=129.9
Q ss_pred HHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHH
Q psy17630 113 CFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYL 192 (372)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 192 (372)
.+..........++.|.+.++.|.+..+.++......++..++.++.|+++||+|||+.+..+.++..++.++....
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--- 102 (398)
T TIGR00895 26 MLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA--- 102 (398)
T ss_pred HHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc---
Confidence 33333334566778888888899999999999999999999999999999999999999999888777776665433
Q ss_pred hhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCccccc
Q psy17630 193 LKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGL 272 (372)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (372)
.+.+..++...+.+.+.+.. .+...+++.|.+|++.|++++++......++..+++.
T Consensus 103 ---------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~------------- 159 (398)
T TIGR00895 103 ---------TNVTQLLILRFLAGLGLGGL-MPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGF------------- 159 (398)
T ss_pred ---------cchHHHHHHHHHHhcccccc-hhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHH-------------
Confidence 11233344444444444433 3444588899999999999999999999999999998
Q ss_pred chhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 273 ALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+.+.+.+..+|+..+.+.++++.+..++.+.++||+.
T Consensus 160 ------------------~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 160 ------------------LAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred ------------------HHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 7778888889998888877666666666565677764
No 41
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.62 E-value=3.3e-14 Score=132.33 Aligned_cols=166 Identities=10% Similarity=0.038 Sum_probs=118.6
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
+.....+.|.++++.|.+..+.+.......++.+++.++.+++.||+|||+.+..+..+..++..++... .. .
T Consensus 221 ~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~---~~-~--- 293 (393)
T PRK09705 221 YASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL---PL-Q--- 293 (393)
T ss_pred HHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc---cc-h---
Confidence 4566778888888889999999999999999999999999999999999998888776666655443221 10 0
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCC-CcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC 278 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (372)
... ....+.+.+.+.... .......+.. |++.|++..++.+..+.+++.++|.
T Consensus 294 ----~~~--~~~~l~g~g~g~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~------------------- 347 (393)
T PRK09705 294 ----LPV--LWAMVCGLGLGGAFP-LCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPW------------------- 347 (393)
T ss_pred ----HHH--HHHHHHHHhccchHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 111 112223333333322 2323445555 4678999999999999999999999
Q ss_pred hhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHHhhhheeccCCCCCC
Q psy17630 279 ILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYFVVPETKNKS 330 (372)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 330 (372)
+.+.+.+..| +...+.+.+..+++..+....+.||++++.
T Consensus 348 ------------~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 348 ------------FSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred ------------HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 8888888876 555677777777777666666788876653
No 42
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.61 E-value=9.6e-15 Score=137.69 Aligned_cols=163 Identities=9% Similarity=0.056 Sum_probs=127.2
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
......+.|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++.++.++.+++.+++....
T Consensus 39 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------- 109 (434)
T PRK11663 39 RKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS--------- 109 (434)
T ss_pred hhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh---------
Confidence 34567788899999999999999999999999999999999999999999999999888888877665441
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
+.+...+...+.+.+.+.... ....++.|.+|+++|++++++.+....+++.+++.
T Consensus 110 ---~~~~l~~~~~l~g~~~g~~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~-------------------- 165 (434)
T PRK11663 110 ---SLWAFALLWVLNAFFQGWGWP-VCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPL-------------------- 165 (434)
T ss_pred ---HHHHHHHHHHHHHHHHHccch-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 123333334444444444433 33478899999999999999999999999999998
Q ss_pred hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630 280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET 326 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 326 (372)
+.+.+.+..+|++.|.+.++++++..+...+++||+
T Consensus 166 -----------~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 166 -----------VVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred -----------HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 888888889999999888777665554444455654
No 43
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.61 E-value=6.9e-15 Score=139.35 Aligned_cols=154 Identities=12% Similarity=0.039 Sum_probs=103.6
Q ss_pred HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc--CCcchhhHhh--HHHHHHHHHHHHHHHHhhcc
Q psy17630 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA--GRRPLLLISD--ICMAICIGALGYYFYLLKLD 196 (372)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 196 (372)
.....+.+.+.++.|++..+.+...++.+++.+++.++.|+++||. ++|+...++. +..+++.+..... +
T Consensus 258 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-----~- 331 (455)
T TIGR00892 258 FAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA-----G- 331 (455)
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh-----c-
Confidence 3445677777788899999999999999999999999999999984 3343333322 2222222221111 1
Q ss_pred ccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhh
Q psy17630 197 EKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGV 276 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (372)
+.+..++...+.+.+.+.. .+....++.|.+|++.+++++++.+....++++++|.
T Consensus 332 ------~~~~~~i~~~~~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~----------------- 387 (455)
T TIGR00892 332 ------DYTGLVIYCIFFGLSFGSV-GALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPP----------------- 387 (455)
T ss_pred ------hHHHHHHHHHHHHHHhchH-HHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHcccc-----------------
Confidence 1233333444444444333 3344477789999999999999999999999999998
Q ss_pred hhhhcchhhhhhhhhhHHHHHhc-ccchhhHHHHHHHHHHHhh
Q psy17630 277 ICILGSLIEFVVVKTFDDVERAF-GTGVAFGTFAVYCIIGTFF 318 (372)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~ 318 (372)
+.+.+.+.. +|+..|++.+++.+++.+.
T Consensus 388 --------------i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 388 --------------LAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred --------------ceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 777777766 4877887777766655543
No 44
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.60 E-value=1.4e-14 Score=134.21 Aligned_cols=164 Identities=13% Similarity=0.035 Sum_probs=130.6
Q ss_pred HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
.......|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+++....
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~---------- 80 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG---------- 80 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc----------
Confidence 4556667778888899999999999999999999999999999999999999999888887777665541
Q ss_pred ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL 280 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (372)
+.+..++...+.+.+.+... +....++.|.+|+++|++++++......++..+++.
T Consensus 81 --~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~--------------------- 136 (399)
T TIGR00893 81 --AYVSLYILRVLLGAAEAPFF-PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGP--------------------- 136 (399)
T ss_pred --CHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHH---------------------
Confidence 23444555555555544433 344478899999999999999999999999999998
Q ss_pred cchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 281 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
+.+.+.+..+|++.+.+.++++++..+..+++.||+++
T Consensus 137 ----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 137 ----------LVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred ----------HHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 77878888899999988888877777666656666543
No 45
>PRK03545 putative arabinose transporter; Provisional
Probab=99.59 E-value=2.5e-14 Score=133.08 Aligned_cols=161 Identities=14% Similarity=0.052 Sum_probs=125.7
Q ss_pred HHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccc
Q psy17630 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (372)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
......|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.+.+.+.
T Consensus 27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------ 94 (390)
T PRK03545 27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------------ 94 (390)
T ss_pred HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh------------
Confidence 34445788889999999999999999999999999999999999999999999988888887776554
Q ss_pred cccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhc
Q psy17630 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILG 281 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (372)
++.+..++...+.+.+.+. ..+....++.|.+|+++|++++++......++..++|.
T Consensus 95 ~~~~~l~~~r~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~---------------------- 151 (390)
T PRK03545 95 WNFTVLLISRIGIAFAHAI-FWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLP---------------------- 151 (390)
T ss_pred ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhh----------------------
Confidence 1233444444444333332 23344477899999999999999999999999999988
Q ss_pred chhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630 282 SLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET 326 (372)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 326 (372)
+.+.+.+..||++.|++.++++++..+..+...||.
T Consensus 152 ---------l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 152 ---------LGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred ---------HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 777777888999999998888777766655556654
No 46
>KOG2533|consensus
Probab=99.59 E-value=1.3e-14 Score=136.20 Aligned_cols=142 Identities=16% Similarity=0.123 Sum_probs=95.4
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChh--HHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPV--YLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLV 93 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~--~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (372)
|||.|++. |++.++..++.++++|+.|. |..++++.+- ..++.++.+.+.. .++.+...++
T Consensus 205 W~~~FiI~---G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~---~~~~~~~~~~~~~-----------~~~~~~~~~~ 267 (495)
T KOG2533|consen 205 WRWLFIIE---GVITLVLGIVVFFFLPDNPSKAWFLTDEEKEL---VVERLRESPSGGI-----------ENKFKWKGFK 267 (495)
T ss_pred ceeehhHH---HHHHHHHHheEEEEecCChhhccccchHHHHH---HHHHHHhccCCCc-----------ccccCHHHHH
Confidence 99999999 99999999999999999997 3322222111 1222221111100 0113445688
Q ss_pred HHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh----cCC
Q psy17630 94 EIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGR 168 (372)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~gr 168 (372)
+.+++|..|-.. +..++.....+.+.+|+|.++++ .|++..+++.+.++..++++++.+++|+++|| ..+
T Consensus 268 ~a~~dp~vw~~~-----l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~ 342 (495)
T KOG2533|consen 268 EALKDPGVWPFS-----LCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFAR 342 (495)
T ss_pred HHHhchhHHHHH-----HHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHH
Confidence 888887433322 22222233356788999999998 46899999999999999999999999999999 555
Q ss_pred cchhhHhhHHH
Q psy17630 169 RPLLLISDICM 179 (372)
Q Consensus 169 r~~~~~~~~~~ 179 (372)
|......+.+.
T Consensus 343 ~~~~~~~~~~~ 353 (495)
T KOG2533|consen 343 RLLFIVFLCLY 353 (495)
T ss_pred HHHHHHHHHHH
Confidence 55554444333
No 47
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.59 E-value=9.3e-14 Score=128.88 Aligned_cols=151 Identities=19% Similarity=0.106 Sum_probs=99.5
Q ss_pred hHHHHHhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630 120 INVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (372)
Q Consensus 120 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
......+.|.+. ++.|.+..+.+.......+...++.++.|+++||+|||+.+..+..+..+..+...... ...
T Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~~~---- 309 (394)
T TIGR00883 235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL-LDS---- 309 (394)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-hcC----
Confidence 445566777777 45688888888888889999999999999999999999987755444433332111111 111
Q ss_pred ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHH-HHHHHHHHHHHHhhccccCCcccccchhhh
Q psy17630 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVIC-ILGSLIEFVVVKTVRHRFTPDVKGLALGVI 277 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (372)
.+.+.........+.+.+.... ....++.|.+|++.|+++.++.+ ....+++.++|.
T Consensus 310 ---~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~------------------ 367 (394)
T TIGR00883 310 ---GSFTLFFFLVLGLALIGGMYTG-PMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPY------------------ 367 (394)
T ss_pred ---CchHHHHHHHHHHHHHHHHHhh-hHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHH------------------
Confidence 1123333333444444433333 34478899999999999988854 444567778888
Q ss_pred hhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHH
Q psy17630 278 CILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAV 310 (372)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~ 310 (372)
+.+.+.+..| |+..++....
T Consensus 368 -------------~~g~l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 368 -------------IAAALVAMTGDWYAIGYYLAA 388 (394)
T ss_pred -------------HHHHHHHHcCcchhHHHHHHH
Confidence 8888888887 6655444443
No 48
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.59 E-value=1.1e-13 Score=132.36 Aligned_cols=189 Identities=9% Similarity=0.036 Sum_probs=118.2
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHH-HHhcCCCCCChhhHH-HHHHHHHHHHHHHHHHHHhhcCC
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRI-LIATNSKIISPNYGQ-NIVGFIQVIMTFFSSLLVDKAGR 168 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~g~l~dr~gr 168 (372)
++++.+++++.+......+ +.... ......+.+.+ .++.|++..+.+... ....++.+++.+++|+++||+||
T Consensus 214 ~l~~~~~~~~~~~~ll~~~-l~~~~----~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~ 288 (491)
T PRK11010 214 PLRDFFGRNNAWLILLLIV-LYKLG----DAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSL 288 (491)
T ss_pred HHHHHHcCcCHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4566776654443332222 11111 12223334444 455799999988887 45668999999999999999999
Q ss_pred cchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHH
Q psy17630 169 RPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICI 248 (372)
Q Consensus 169 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 248 (372)
|+.+.++.++.++..+.+..... .. . +.+.......+.....+.+.... +++..++.+++.+++..++.+.
T Consensus 289 ~~~l~i~~~l~~l~~l~~~~l~~-~~-~------~~~~l~~~~~l~~~~~g~~~~~~-~a~~~~l~~~~~~~t~~gl~~s 359 (491)
T PRK11010 289 FRALMIFGILQGVSNAGYWLLSI-TD-K------NLYSMGAAVFFENLCGGMGTAAF-VALLMTLCNKSFSATQFALLSA 359 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cc-c------cHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCcHHHHHHHHH
Confidence 98877666555554433221111 00 1 11222222222222222222222 4677888898899999999999
Q ss_pred HHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccC
Q psy17630 249 LGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE 325 (372)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e 325 (372)
...++..+++. +.+.+.+..||+..|.+.+++++++.+..+ ..++
T Consensus 360 ~~~lg~~~~~~-------------------------------~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~-~~~~ 404 (491)
T PRK11010 360 LSAVGRVYVGP-------------------------------VAGWFVEAHGWPTFYLFSVAAAVPGLLLLL-VCRQ 404 (491)
T ss_pred HHHHHHHHHHH-------------------------------HHHHHHHHhChHHHHHHHHHHHHHHHHHHH-HHHh
Confidence 99998888888 888888989998888888888877766655 3343
No 49
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.57 E-value=6.9e-14 Score=130.13 Aligned_cols=161 Identities=12% Similarity=0.114 Sum_probs=126.3
Q ss_pred HHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccc
Q psy17630 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (372)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
......|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+.....
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------ 105 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------------ 105 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 34446778888999999999999999999999999999999999999999999999988877665443
Q ss_pred cccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhc
Q psy17630 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILG 281 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (372)
.+.+..++...+.+.+.+.. .+....++.|.+|+++|+.+.++......++..++|.
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~-~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~---------------------- 162 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGF-WAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAP---------------------- 162 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 12344455555555554443 3344477899999999999999999999999999998
Q ss_pred chhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630 282 SLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET 326 (372)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 326 (372)
+.+.+.+..+|++.|++.++++++..+......||+
T Consensus 163 ---------l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 163 ---------LGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL 198 (394)
T ss_pred ---------HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 888888889999999888777666555444445664
No 50
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.57 E-value=8.9e-14 Score=132.41 Aligned_cols=243 Identities=12% Similarity=0.028 Sum_probs=136.2
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (372)
||+.|++. +++.++..++.+++.||+|+.... .+.+| ++.+++... ..+.+.+.+.+++++
T Consensus 197 w~~~f~i~---~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~-~~~i~~~~~--------------~~~~~~~~~~~~~~~ 257 (465)
T TIGR00894 197 WPMIFYVF---GIVGCAWSLLWFVFPADDPSIHPC-ISKFE-KKYINSSLQ--------------GQKGSTRQSLPIKAI 257 (465)
T ss_pred CCeehhhh---hHHHHHHHHHHHHHhcCCcccCCC-CCHHH-HHHHHhhcc--------------cccCCCCCCCCHHHH
Confidence 99999999 888877666777778888852110 11111 111110000 000001123357788
Q ss_pred HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhh-
Q psy17630 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLL- 173 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~- 173 (372)
++++..+... +..+....+.+.+..|+|.++++ .|++..+.++......++..++.++.|+++||+++|+...
T Consensus 258 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~ 332 (465)
T TIGR00894 258 PKSLPVWAIW-----FAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSL 332 (465)
T ss_pred hcCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 8776333222 22223333356677788888766 5888889999999999999999999999999987553221
Q ss_pred --HhhHHHHHHHHHHHHH-HHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHH
Q psy17630 174 --ISDICMAICIGALGYY-FYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG 250 (372)
Q Consensus 174 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 250 (372)
...+...++.+..... ....... ...+..+....+.+.+.+.. .+..+....|..|. .+|.+.++.+..+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~-~~g~~~g~~~~~~ 405 (465)
T TIGR00894 333 TAARKIFNGIGGLGPGIFAYALPYLS-----AAFYLTIIILTLANAVSSGP-LAGVLINSLDLAPR-FLGFIKGITGLPG 405 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC-----CchHHHHHHHHHHHHHhhhh-hhhhhhchhhcChh-HHHHHHHHHHHHH
Confidence 0111111111111100 0001000 01222223333332222222 22232444566664 8899999999999
Q ss_pred HHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhc---ccchhhHHHHHHHHHHHhhhh
Q psy17630 251 SLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF---GTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~ 320 (372)
.++++++|. +.+.+.+.. +|...|.+.+++.+++.++..
T Consensus 406 ~l~~~i~p~-------------------------------l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 406 FIGGLIAST-------------------------------LAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred HHHHHHHHH-------------------------------hhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 999999998 666655432 366678888777777766544
No 51
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.57 E-value=4.8e-14 Score=130.69 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=128.3
Q ss_pred chHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630 119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (372)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
+........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+.....
T Consensus 20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--------- 90 (385)
T TIGR00710 20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS--------- 90 (385)
T ss_pred HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---------
Confidence 34555566788888899999999999999999999999999999999999999999888888777765443
Q ss_pred ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC 278 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (372)
.+.+...+...+.+.+.+... +....++.|.+|+++|++..++.+....++..+++.
T Consensus 91 ---~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~------------------- 147 (385)
T TIGR00710 91 ---NNIETLLVLRFVQAFGASAGS-VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPL------------------- 147 (385)
T ss_pred ---ccHHHHHHHHHHHHcchhHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 112333444444443333332 334478899999999999999999999999999988
Q ss_pred hhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
+.+.+.+..+|+..+++.+++.++..+..++..||+++
T Consensus 148 ------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 148 ------------LGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred ------------HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 77778888899998888888777776666656777643
No 52
>KOG2532|consensus
Probab=99.57 E-value=8.6e-14 Score=130.30 Aligned_cols=237 Identities=15% Similarity=0.181 Sum_probs=154.8
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhh---hhhhH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQ---KKKSL 92 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 92 (372)
|+++|++. +++++++.++++++..|+|.- +.. -.++|.+.+++.+.+++. .+.|+
T Consensus 194 W~sifY~~---g~~g~i~~~~w~~~~~d~P~~---h~~----------------is~~El~~I~~~k~~~~~~~~~~vP~ 251 (466)
T KOG2532|consen 194 WPSIFYVF---GIVGLIWFILWFLFYSDSPSK---HPN----------------ISEKELKYIEKGKSEAHVKKKPPVPY 251 (466)
T ss_pred CchHHHHH---HHHHHHHHHHHHHHhcCCccc---CCC----------------CCHHHHHHHHhcccccccCCCCCCCH
Confidence 99999999 999999888888888899862 111 122222233322222211 36789
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc--
Q psy17630 93 VEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR-- 169 (372)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr-- 169 (372)
+++++++ .++...+..+....+.+.+..|+|.|+++. |++..+.++..++..+...+..+++|.++||.-+|
T Consensus 252 ~~i~ts~-----~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~l 326 (466)
T KOG2532|consen 252 KAILTSP-----PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRIL 326 (466)
T ss_pred HHHHcCH-----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999997 444444555555556788999999999886 99999999999999999999999999999998663
Q ss_pred -------chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhH
Q psy17630 170 -------PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLA 242 (372)
Q Consensus 170 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 242 (372)
..-.++....+++++.+++. .. ...+..+.++.+.....+....... .-..|. .++.-+..
T Consensus 327 s~t~~rkifn~i~~~~~ai~l~~l~~~---~~-------~~~~~a~~~l~~~~~~~g~~~~Gf~-~~~~~~-apq~a~~l 394 (466)
T KOG2532|consen 327 SETTVRKIFNTIAFGGPAVFLLVLAFT---SD-------EHRLLAVILLTIAIGLSGFNISGFY-KNHQDI-APQHAGFV 394 (466)
T ss_pred chHhHHHHHHhHHHHHHHHHHHeeeec---CC-------CcchHHHHHHHHHHHHcccchhhhH-hhhhhc-cchHHHHH
Confidence 12223333333433333322 11 1122333333332222222211111 122222 45677999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHH---HhcccchhhHHHHHHHHHHHhhh
Q psy17630 243 LGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVE---RAFGTGVAFGTFAVYCIIGTFFV 319 (372)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~ 319 (372)
+++.+....+.++++|. +.+.+. +...|+..|++.+++.+++.++.
T Consensus 395 ~g~~~~~~~~~~~~~P~-------------------------------~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f 443 (466)
T KOG2532|consen 395 MGIINFVGALAGFIAPL-------------------------------LVGIIVTDNTREEWRIVFLIAAGILIVGNIIF 443 (466)
T ss_pred HHHHHHHHHHHHHHHHH-------------------------------heeeEeCCCCHHHHHHHHHHHHHHHHHhchhe
Confidence 99999999999999998 555555 33479999999999988888665
Q ss_pred hee
Q psy17630 320 YFV 322 (372)
Q Consensus 320 ~~~ 322 (372)
.++
T Consensus 444 ~~f 446 (466)
T KOG2532|consen 444 LFF 446 (466)
T ss_pred eEe
Confidence 444
No 53
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.56 E-value=3.7e-14 Score=132.57 Aligned_cols=164 Identities=10% Similarity=-0.022 Sum_probs=124.4
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
........|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+.+...
T Consensus 31 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 100 (406)
T PRK11551 31 LQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA---------- 100 (406)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----------
Confidence 4556667788888999999999999999999999999999999999999999999888777766654433
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
.+.+..++...+.+.+.+... +....++.|.+|+++|++++++.+....+++.+++.
T Consensus 101 --~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~-------------------- 157 (406)
T PRK11551 101 --WDFPSLLVARLLTGVGLGGAL-PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASV-------------------- 157 (406)
T ss_pred --ccHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 113344444455544444333 344478899999999999999999888888888887
Q ss_pred hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+...+.+..+|+..+++.+++.++..++...++||+.
T Consensus 158 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 158 -----------IGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred -----------HHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 6666667788988888877666666555555667753
No 54
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.56 E-value=1.1e-13 Score=128.94 Aligned_cols=178 Identities=13% Similarity=0.064 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH
Q psy17630 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG 184 (372)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 184 (372)
.+..+.+................|.+.+++|.+..+.++..+...++..++.++.|+++||+|||++++.+.++.+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~ 92 (405)
T TIGR00891 13 AFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTL 92 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 33444444444444556677778888888999999999999999999999999999999999999999998888877776
Q ss_pred HHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccc
Q psy17630 185 ALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHR 264 (372)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (372)
.+.+. .+.+..+....+.+.+.+.... ....++.|.+|+++|+++.++......++..+++.
T Consensus 93 ~~~~~------------~~~~~l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----- 154 (405)
T TIGR00891 93 ACGFA------------PGYITMFIARLVIGIGMGGEYG-SSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQ----- 154 (405)
T ss_pred HHHHh------------ccHHHHHHHHHHHHhhhhhhhH-HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHH-----
Confidence 65443 1123344444555444443333 33478899999999999999999998999988887
Q ss_pred cCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc--cchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 265 FTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG--TGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+.+.+.+..+ |+..+.+.+...++.. +.....||++
T Consensus 155 --------------------------l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~ 192 (405)
T TIGR00891 155 --------------------------VYSLVVPVWGDGWRALFFISILPIIFAL-WLRKNIPEAE 192 (405)
T ss_pred --------------------------HHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHhCCCCh
Confidence 6666666655 8888876554444433 3334567654
No 55
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.56 E-value=4.2e-13 Score=125.17 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=108.0
Q ss_pred HHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccc
Q psy17630 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (372)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
....+.+.+..+.|. .+.+.......++.+++.++.|++.||+|||+.+..+..+.+++.+..... +
T Consensus 234 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~------ 300 (399)
T PRK05122 234 TIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-----P------ 300 (399)
T ss_pred HHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----c------
Confidence 344556666666665 344566677788889999999999999999998888777666665544332 0
Q ss_pred cccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhc
Q psy17630 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILG 281 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (372)
+.+..+....+.+.+.+.... .......|..|++.|+++.++.+....++..+++.
T Consensus 301 -~~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~---------------------- 356 (399)
T PRK05122 301 -SPWMALIGAALTGFGFSLVFP-ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGP---------------------- 356 (399)
T ss_pred -cHHHHHHHHHHHHHhHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 122333334444444443332 22245578889999999999999999999888888
Q ss_pred chhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630 282 SLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 320 (372)
+.+.+.+..||+..+++.+++++++.+..+
T Consensus 357 ---------~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (399)
T PRK05122 357 ---------LAGLVASWFGYPSIFLAAALAALLGLALTW 386 (399)
T ss_pred ---------HHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888998888888877777766655
No 56
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.56 E-value=5.6e-14 Score=133.88 Aligned_cols=153 Identities=14% Similarity=0.061 Sum_probs=91.4
Q ss_pred HHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcc-------hhhHhhHHHHHHHHHHHHHHHHh
Q psy17630 122 VVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP-------LLLISDICMAICIGALGYYFYLL 193 (372)
Q Consensus 122 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-------~~~~~~~~~~~~~~~~~~~~~~~ 193 (372)
....+.|.++.+ .|++..+.+....+..++.+++.+++|+++||++||+ .......+.++..+++...
T Consensus 270 ~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~---- 345 (476)
T PLN00028 270 TMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA---- 345 (476)
T ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc----
Confidence 344556666544 5989888999999999999999999999999998762 1111211111111111110
Q ss_pred hccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccc
Q psy17630 194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLA 273 (372)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (372)
. +.+..+....+++.+.+...+ ..+.+..|..| +.||+..++.+..+.++++++|.
T Consensus 346 -~-------~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~-------------- 401 (476)
T PLN00028 346 -N-------SLGAAIVVMILFSIFVQAACG-ATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQL-------------- 401 (476)
T ss_pred -c-------hHHHHHHHHHHHHHHHHHhhh-hhcccCcccCh-hhchhhhhhhhccccHHHHHHHH--------------
Confidence 0 112222222233333222222 23355566654 68999999998888888888776
Q ss_pred hhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630 274 LGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 320 (372)
+.+ ..+..+|+..|.+.+++.+++.++.+
T Consensus 402 -----------------l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~ 430 (476)
T PLN00028 402 -----------------LFF-TGSSYSTETGISLMGVMIIACTLPVA 430 (476)
T ss_pred -----------------HHH-hcCCccHhhHHHHHHHHHHHHHHHHH
Confidence 433 11233577788888777777766554
No 57
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.55 E-value=1.3e-13 Score=129.02 Aligned_cols=154 Identities=8% Similarity=0.012 Sum_probs=104.0
Q ss_pred HHhhHHHHHhcCCCCCC----hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 124 IFYLKRILIATNSKIIS----PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 124 ~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
..+.+.+..+.+.+..+ .+....+..++.+++.+..|+++||+|||+.+..+..+..++.+..... +
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~---- 309 (408)
T PRK09874 239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-----Q---- 309 (408)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-----c----
Confidence 34445555554322222 2344455667788888999999999999999888877666555443222 0
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
..+...+...+.+.+.+... +...+++.+..|++.|++.+++.+....++..++|.
T Consensus 310 ---~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~-------------------- 365 (408)
T PRK09874 310 ---TPLQLGILRFLLGAADGALL-PAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPL-------------------- 365 (408)
T ss_pred ---cHHHHHHHHHHHHhhhHhhH-HHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHH--------------------
Confidence 12333333334444443332 233355677788899999999999999999999998
Q ss_pred hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhhe
Q psy17630 280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYF 321 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 321 (372)
+.+.+.+..||+..|.+.+++.++..+..++
T Consensus 366 -----------~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 366 -----------MGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred -----------HHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999888888877766653
No 58
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.55 E-value=2.6e-13 Score=125.88 Aligned_cols=177 Identities=12% Similarity=0.023 Sum_probs=128.2
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP 170 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~ 170 (372)
+.++++|+|+.+...+..++... .......+.|.+.++.|.+..+.+.......+..+++.++.+++.||+|+|+
T Consensus 197 ~~~~~l~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~ 271 (382)
T TIGR00902 197 AFIALLKNPMNLRFLAAVCLIQG-----AHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD 271 (382)
T ss_pred hHHHHHcChHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH
Confidence 35677888754433332222222 2344555777778889999999999999999999999999999999999999
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHH-H
Q psy17630 171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICI-L 249 (372)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~-~ 249 (372)
.+.++.+...+....+... ++.+..+....+.+..++....... .++.+. |++.|++++++.+. .
T Consensus 272 ~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~q~l~g~~~~~~~~~~~-~~i~~~-~~~~~~~~q~~~~~~~ 337 (382)
T TIGR00902 272 LLLISAIACVGRWAIIGAI------------EAFPLIFLLQILHCGTFAVCHLAAM-RYIAAQ-PGSEIAKLQALYNALA 337 (382)
T ss_pred HHHHHHHHHHHHHHHHHhH------------hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhC-CHhhHHHHHHHHHHHH
Confidence 9999988888877665443 1234455556666666665544443 677887 99999999999764 5
Q ss_pred HHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhh
Q psy17630 250 GSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFF 318 (372)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 318 (372)
..++..+++. +.+.+.+..|. ..|+..+++.+++.++
T Consensus 338 ~g~g~~~g~~-------------------------------~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 338 MGGLIAIFTA-------------------------------FAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHH-------------------------------HHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 5678888888 88899998886 5677777777665544
No 59
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.1e-13 Score=124.62 Aligned_cols=161 Identities=16% Similarity=0.089 Sum_probs=140.0
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
-+.....+|.+.+|+|.+..+.+...+.+..+..++.++...+.||+.||++++..+.++.++.++.+++
T Consensus 29 Efv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA---------- 98 (394)
T COG2814 29 EFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA---------- 98 (394)
T ss_pred HHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh----------
Confidence 4567788999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
++.+..++...+.+...+..+. +..+...++.|+++|++++++......++..++..
T Consensus 99 --p~f~~Ll~aR~~~g~a~G~f~~-i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvP-------------------- 155 (394)
T COG2814 99 --PSFAVLLLARALAGLAHGVFWS-IAAALAARLVPPGKRGRALALVFTGLTLATVLGVP-------------------- 155 (394)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhcc--------------------
Confidence 2244555666666655554444 55588899999999999999999888888888887
Q ss_pred hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheecc
Q psy17630 280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP 324 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 324 (372)
+...+-+.+|||.+|+..++++++..+..+..+|
T Consensus 156 -----------LGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 156 -----------LGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred -----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888899999999999999999999998888888
No 60
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.55 E-value=8.4e-14 Score=132.01 Aligned_cols=165 Identities=11% Similarity=0.031 Sum_probs=116.5
Q ss_pred HHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccccc
Q psy17630 123 VIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG 202 (372)
Q Consensus 123 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (372)
+....|.+.++ |.+..+.++..+...++..+++++.|+++||+|||++++.+.++.+++.+.+.+.... ..
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~--------~~ 118 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--------TS 118 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc--------cc
Confidence 45567777666 9999999999999999999999999999999999999999988888877766543100 01
Q ss_pred ccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcc
Q psy17630 203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGS 282 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (372)
+.+..+....+.+.+.+....+.. ..+.|.+|+++|++++++.+....+++.+.+..
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l---------------------- 175 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLL---------------------- 175 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHH-HHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHH----------------------
Confidence 122334444455555444443343 567889999999999999888887776444430
Q ss_pred hhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 283 LIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 283 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
.........+|++.|++.+.++++..++..+++||+.
T Consensus 176 --------~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 176 --------FLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP 212 (452)
T ss_pred --------HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 2122223348998998888777776666666677653
No 61
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.55 E-value=2.1e-13 Score=127.04 Aligned_cols=240 Identities=12% Similarity=0.143 Sum_probs=143.7
Q ss_pred eechhhHHhhhhh-----hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHH
Q psy17630 3 VSGILYTYVIGSL-----YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE 77 (372)
Q Consensus 3 ~~G~~~~~~i~~~-----Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 77 (372)
++|..+++.++.. ||+.|++. ++++++..++.+...||+|+. ++.++ ..++
T Consensus 143 ~~g~~~g~~~~g~l~~~~~~~~f~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~----~~~~---------- 198 (396)
T TIGR00882 143 CVGWALCASIAGILFSIDPQIVFWLG---SGFALILMLLLMFAKPKAPSS-------ATVAN----ALGA---------- 198 (396)
T ss_pred ccHHHHHHHHHhhhhccCchHHHHHH---HHHHHHHHHHHHHhCCCCchh-------hhhhc----cccc----------
Confidence 4556666666554 99999998 777777555555555665431 00000 0000
Q ss_pred HHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc----CCCCCChhhHHHHHHHHHH
Q psy17630 78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT----NSKIISPNYGQNIVGFIQV 153 (372)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~ 153 (372)
++++++..+.+++++++..+...+..+..... +.....+.+.+.++. +.+....+.......+...
T Consensus 199 -----~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~ 268 (396)
T TIGR00882 199 -----NASAFSLKLALELFRQRKFWMFVLYVVGVACV-----YDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNA 268 (396)
T ss_pred -----ccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 00011223467788887554333322222211 222222344444433 3344456777778888889
Q ss_pred HHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccC
Q psy17630 154 IMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL 233 (372)
Q Consensus 154 ~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 233 (372)
++.+..|++.||+|||+.+.++.++.++........ .+.+.......+.+.+...... ....+..+.
T Consensus 269 ~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~ 335 (396)
T TIGR00882 269 LIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA------------TTALEVVILKMLHAFEVPFLLV-GCFKYITSQ 335 (396)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc------------CChHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 999999999999999999888877666655443221 1133333333333333222111 222455677
Q ss_pred CCcchhhhHHHH-HHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHH
Q psy17630 234 FTPDVKGLALGV-ICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYC 312 (372)
Q Consensus 234 ~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 312 (372)
.|++.++++.+. .+....+++.+++. +.+.+.+..|++.+|.+.+++.
T Consensus 336 ~~~~~~at~~~~~~~~~~~lg~~~~~~-------------------------------l~G~l~~~~G~~~~f~~~~~~~ 384 (396)
T TIGR00882 336 FDVRLSATIYLIGFQFAKQLAMIFLST-------------------------------LAGNMYDSIGFQGAYLVLGCIV 384 (396)
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHH-------------------------------hHHHHHHhcccHHHHHHHHHHH
Confidence 788888887766 56778889999998 8999999999988888888877
Q ss_pred HHHHhhhh
Q psy17630 313 IIGTFFVY 320 (372)
Q Consensus 313 ~~~~~~~~ 320 (372)
++..+...
T Consensus 385 ~i~~~~~~ 392 (396)
T TIGR00882 385 LLFTLISV 392 (396)
T ss_pred HHHHHHHH
Confidence 76665543
No 62
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.55 E-value=7.4e-14 Score=128.86 Aligned_cols=230 Identities=17% Similarity=0.153 Sum_probs=127.4
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (372)
||+.|++. +++.++..++..+++||+|+....+.+ ++. .+++.+++.+ +..++.+..+...+++
T Consensus 149 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~---~~~~~~~~~~~~~~~~ 212 (379)
T TIGR00881 149 WHWVFIVP---GIIAIIVSLICFLLLRDSPQSCGLPPA-EEM---------PNEEPDGDAE---KKEEELTKKQIFLQYV 212 (379)
T ss_pred chhHHHHH---HHHHHHHHHHHheeeCCCccccccCcc-ccC---------cccccccccc---cccccccchHHHHHHH
Confidence 99999998 777777677777788887752110000 000 0000000000 0000001112234566
Q ss_pred HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 174 (372)
++++..+...+..... .........+.|.+.++ .|++..+.+.......++.+++.++.|+++||..+|+....
T Consensus 213 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~ 287 (379)
T TIGR00881 213 LLNKVLWYISLGYVFV-----YVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPL 287 (379)
T ss_pred HhcchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHH
Confidence 6666333222222211 11234455667776654 58888889999999999999999999999998643332222
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHH
Q psy17630 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE 254 (372)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 254 (372)
............... ..... .+...........+.. ..+..+..+.+..|.+|++.|+++.++.+....+++
T Consensus 288 ~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 359 (379)
T TIGR00881 288 AVFFMALIIVSLLVY-WLNPA------ANPLMDLICLFALGFL-VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGG 359 (379)
T ss_pred HHHHHHHHHHHHHHH-hcCcc------hhHHHHHHHHHHHHHH-HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhh
Confidence 222111111111111 11000 0112222222222222 222233334677999999999999999999999999
Q ss_pred HHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhh
Q psy17630 255 FVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAF 305 (372)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 305 (372)
.++|. +.+.+.+..||+..|
T Consensus 360 ~~~~~-------------------------------~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 360 ILAGL-------------------------------PLGYLADGFGWAGAF 379 (379)
T ss_pred hhhhh-------------------------------hHHHHHHhhcccccC
Confidence 99998 888899988887543
No 63
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.54 E-value=3.3e-14 Score=131.14 Aligned_cols=165 Identities=13% Similarity=0.072 Sum_probs=126.5
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
...+....|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+++....
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------- 81 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST--------- 81 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh---------
Confidence 34556677888888899999999999999999999999999999999999999999988888877765541
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
+.+..++...+.+.+.+.. .+...+++.|.+|+++|+++.++.+....++..+++..
T Consensus 82 ---~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~------------------- 138 (379)
T TIGR00881 82 ---SLWVMAALWALNGIFQGMG-WPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPL------------------- 138 (379)
T ss_pred ---hHHHHHHHHHHHHhhcccc-CCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHH-------------------
Confidence 1334444445554444433 34445788999999999999999998888888888830
Q ss_pred hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
....+.+..+|+..+++.+.+.++..++.+++.||++
T Consensus 139 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 139 -----------VLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred -----------HHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence 3444556678998888888777777666666677654
No 64
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.54 E-value=1.4e-13 Score=131.90 Aligned_cols=178 Identities=16% Similarity=0.073 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHH
Q psy17630 106 IVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGA 185 (372)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 185 (372)
+..+.+..+.............|.+.+++|.+..+.++....+.++...+.++.|+++||+|||++++.+.++..++.+.
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~ 87 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLA 87 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33333444444444556777789999999989999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCC-CcchhhhHHHHHHHHHHHHHHHHHHhhccc
Q psy17630 186 LGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTVRHR 264 (372)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (372)
++.. ++.+..++...+.+.+.+.. .+.....+.+.+ |+++|++++++......++..++|.
T Consensus 88 ~~~a------------~~~~~li~~r~l~G~g~~~~-~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~----- 149 (495)
T PRK14995 88 AAFS------------PTASWLIATRALLAIGAAMI-VPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPL----- 149 (495)
T ss_pred HHHc------------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 7654 12344455555555554432 222224444554 7889999999999999999999999
Q ss_pred cCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 265 FTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+.+.+.+..+||+.|++...++++..++..+++|+.+
T Consensus 150 --------------------------lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 150 --------------------------VGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred --------------------------HHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 8888889999999999888777777666666677643
No 65
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.54 E-value=7e-14 Score=130.11 Aligned_cols=177 Identities=15% Similarity=0.106 Sum_probs=131.5
Q ss_pred HHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHH
Q psy17630 108 IVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALG 187 (372)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~ 187 (372)
+..........+........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.++.+.++..++.+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~ 86 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS 86 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 33344444444556667788999999999999999999999999999999999999999999999998888777776654
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCC
Q psy17630 188 YYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTP 267 (372)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (372)
.. .+.+..+....+.+.+.+.. .+..+.++.|.+|+++|+++.++.+....++..++|.
T Consensus 87 ~~------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-------- 145 (392)
T PRK10473 87 LA------------ETSSLFLAGRFLQGIGAGCC-YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPV-------- 145 (392)
T ss_pred Hh------------CcHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 33 11223333344443333322 2344578899999999999999999888888888887
Q ss_pred cccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 268 DVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
+.+.+.+..+|+..+++.+.++++..++.++..||+++
T Consensus 146 -----------------------i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 146 -----------------------LGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred -----------------------HHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 66666677899988888888877777766666777643
No 66
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.54 E-value=5.7e-14 Score=134.43 Aligned_cols=172 Identities=15% Similarity=0.083 Sum_probs=133.3
Q ss_pred HHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHH
Q psy17630 112 LCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFY 191 (372)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~ 191 (372)
..+.............|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.++.+.++..++.+++...
T Consensus 10 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-- 87 (485)
T TIGR00711 10 GTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA-- 87 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc--
Confidence 333333345567778899999999999999999999999999999999999999999999999988888877766443
Q ss_pred HhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccc
Q psy17630 192 LLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKG 271 (372)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (372)
.+.+..+....+.+.+.+. ..+....++.|.+|++.|+++.++......++..++|.
T Consensus 88 ----------~~~~~l~~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~------------ 144 (485)
T TIGR00711 88 ----------PNLELMIIFRVIQGFGGGP-LIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPT------------ 144 (485)
T ss_pred ----------CCHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhc------------
Confidence 1233444444444444333 33455588899999999999999999999999999988
Q ss_pred cchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 272 LALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+.+.+.+..+|++.|++.+.++++..++..++.||++
T Consensus 145 -------------------~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 145 -------------------LGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred -------------------cHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 8888888899999998887777776666655666643
No 67
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.53 E-value=1.3e-13 Score=127.84 Aligned_cols=164 Identities=12% Similarity=0.070 Sum_probs=127.0
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
........|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.++.+..
T Consensus 19 ~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~---------- 88 (382)
T PRK10091 19 EFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS---------- 88 (382)
T ss_pred HHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh----------
Confidence 3455667888889999999999999999999999999999999999999999999998888887766554
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
++.+..++...+.+.+.+... +....++.|.+|+++|+.++++......++..+++.
T Consensus 89 --~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-------------------- 145 (382)
T PRK10091 89 --SSYLMLAIGRLVSGFPHGAFF-GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIP-------------------- 145 (382)
T ss_pred --CcHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhcc--------------------
Confidence 123444445555544444322 233366789999999999999988888888888887
Q ss_pred hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+.+.+.+..+||+.|.+.+.+.++..+..++..||.+
T Consensus 146 -----------l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 146 -----------LGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred -----------HHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7777777889999999888877776665555677754
No 68
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.53 E-value=6.2e-13 Score=123.67 Aligned_cols=185 Identities=11% Similarity=-0.058 Sum_probs=112.6
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHH-HHHHHHHHHHHHHhhcCCc
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKAGRR 169 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~grr 169 (372)
++++.+|+|..+......++.... ......+.+.+.++.|++..+.+.......+ ..+++.++.|++.||+|+|
T Consensus 200 ~~~~~l~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~ 274 (390)
T TIGR02718 200 SLFRFFRRPLAWSLLALALLSAMT-----AVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW 274 (390)
T ss_pred HHHHHHcCcCHHHHHHHHHHHHHH-----HHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 356778877544333322222211 2233345666777889999998888777664 5667789999999999999
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCc-chhhhHHHHHHH
Q psy17630 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP-DVKGLALGVICI 248 (372)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~ 248 (372)
+.+..+..+.++..+..... ...... ...........+.....+....... ....+..++ +.+++.+++.+.
T Consensus 275 ~~l~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~ 347 (390)
T TIGR02718 275 RTFILGVGLAGSLALLWFAQ-AAFWLA-----PGIAVAWSCSAFGSLITGITSVAIY-TAFMRFAGDGDQAGTDVTAVQS 347 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHcccC-----CcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCcccchHHHHHHHHH
Confidence 99887766553332222111 100000 0111111211222222232222222 344445554 788999999999
Q ss_pred HHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhh
Q psy17630 249 LGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFF 318 (372)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 318 (372)
...++..++|. +.+.+.+..|++..|...+++.+++.+.
T Consensus 348 ~~~lg~~~g~~-------------------------------~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 348 TRDLGELIASS-------------------------------IAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHH-------------------------------HHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 99999999999 8899999889887887777666665443
No 69
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.53 E-value=5.8e-13 Score=123.50 Aligned_cols=152 Identities=11% Similarity=0.013 Sum_probs=96.1
Q ss_pred HhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccc
Q psy17630 125 FYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGL 203 (372)
Q Consensus 125 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (372)
.+.+.++ +..|++..+.+.......++.+++.++.|++.||+|+|+.+..+..+.+++.+.+... .. .
T Consensus 220 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~---~~--------~ 288 (382)
T PRK10091 220 SYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF---GG--------M 288 (382)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHH---Hh--------h
Confidence 3444444 4468888899999999999999999999999999999999888777766665443221 00 1
Q ss_pred cHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcch
Q psy17630 204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSL 283 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (372)
.+.......+.+.+......+.......+..+.+.++.+ ..+....++.+++|.
T Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~------------------------ 342 (382)
T PRK10091 289 KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAY------------------------ 342 (382)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHH------------------------
Confidence 122222222333322222222222333444555555544 345667889999998
Q ss_pred hhhhhhhhhHHHHHh-cccchhhHHHHHHHHHHHhhhh
Q psy17630 284 IEFVVVKTFDDVERA-FGTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 284 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 320 (372)
+.+.+.+. .+|+..+.+.++++.+......
T Consensus 343 -------~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 343 -------CGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred -------HhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 88888885 5787777777666655554433
No 70
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.53 E-value=1.9e-13 Score=128.71 Aligned_cols=158 Identities=14% Similarity=0.057 Sum_probs=120.6
Q ss_pred HHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHH
Q psy17630 108 IVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALG 187 (372)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~ 187 (372)
.+.+.............+..|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~ 101 (426)
T PRK12307 22 SAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSG 101 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 33333344444455667777888888999999999999999999999999999999999999999999999888887765
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCC
Q psy17630 188 YYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTP 267 (372)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (372)
+.. +.+..++...+.+.+.+.... ....++.|.+|+++|+++.++......++..+++.
T Consensus 102 ~~~------------~~~~l~~~r~l~G~g~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~-------- 160 (426)
T PRK12307 102 LAS------------GVIMLTLSRFIVGMGMAGEYA-CASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAY-------- 160 (426)
T ss_pred HHh------------HHHHHHHHHHHHHHHHhhHHH-HHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHH--------
Confidence 541 133444555555544443333 33477899999999999999998888888888887
Q ss_pred cccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHH
Q psy17630 268 DVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA 309 (372)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 309 (372)
+.+.+.+..+|++.+++..
T Consensus 161 -----------------------l~~~l~~~~~w~~~f~i~~ 179 (426)
T PRK12307 161 -----------------------FMPSFAEAYGWRAAFFVGL 179 (426)
T ss_pred -----------------------HHHHHcccCCHHHHHHHHH
Confidence 7777777889998887643
No 71
>PRK10054 putative transporter; Provisional
Probab=99.53 E-value=2.5e-13 Score=126.37 Aligned_cols=164 Identities=14% Similarity=0.077 Sum_probs=119.7
Q ss_pred chHHHHHhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccc
Q psy17630 119 GINVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDE 197 (372)
Q Consensus 119 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (372)
+......+.|.++ ++.|++..+.++..+...+..+++.++.|+++||+|||+++..+.++..++.+.+.+..
T Consensus 22 g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~------- 94 (395)
T PRK10054 22 GRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN------- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh-------
Confidence 3455566666665 45799999999999999999999999999999999999999988887777666554431
Q ss_pred cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhh
Q psy17630 198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVI 277 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (372)
+.+..+....+.+...+ ...+....+..|..|+++|+++.++.+...+++..++|.
T Consensus 95 -----~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~------------------ 150 (395)
T PRK10054 95 -----NVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPP------------------ 150 (395)
T ss_pred -----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 12223333333333322 223444577789999999999999999999999999988
Q ss_pred hhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 278 CILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+.+.+.+ .+|+..|.+.+++.++..+...++.||++
T Consensus 151 -------------l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 151 -------------LGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred -------------HHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7766654 68998998887777776555554556543
No 72
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.53 E-value=1e-12 Score=122.89 Aligned_cols=196 Identities=14% Similarity=0.059 Sum_probs=115.3
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (372)
||+.|++. +++.++..+..++.+||+++.. ++ + .. . ++...+++++
T Consensus 166 w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~-~-------------~~----~----------~~~~~~~~~~ 211 (406)
T PRK15402 166 WRGMFVLF---AALAALSFFGLWRAMPETAGRV---GE-K-------------LS----L----------KELGRDYKLV 211 (406)
T ss_pred ccHHHHHH---HHHHHHHHHHHHHhCCCCCccc---cc-c-------------cc----H----------HHHHHHHHHH
Confidence 99999998 6776665555666778875310 00 0 00 0 0011235567
Q ss_pred HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 174 (372)
++++..+...+...+... .......+.|.++. +.|.+..+.+.......++.+++.++.++++||++||+.+..
T Consensus 212 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~ 286 (406)
T PRK15402 212 LKNRRFVAGALALGLVSL-----PLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRM 286 (406)
T ss_pred HcCcHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 777644332222111111 12233444566554 468888777877777778889999999999999999999888
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHH
Q psy17630 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE 254 (372)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 254 (372)
+.++..++.+........... ..+.......+.+.+.+....... .... ..+++.||+..++.+....++.
T Consensus 287 ~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~g~g~~~~~~~~~-~~~~-~~~~~~~g~~~~~~~~~~~~~~ 357 (406)
T PRK15402 287 GLWPMVAGLLLAALATVISSH-------AYLWLTAGLSLYAFGIGLANAGLY-RLTL-FSSDVSKGTVSAAMGMLSMLIF 357 (406)
T ss_pred HHHHHHHHHHHHHHHHHcccc-------cHHHHHHHHHHHHHHHHHHhhhHH-HHHh-hhccccccHHHHHHHHHHHHHH
Confidence 877776666655443111111 122233334444444433322221 2222 2344789999999999998888
Q ss_pred HHHHH
Q psy17630 255 FVVVK 259 (372)
Q Consensus 255 ~~~~~ 259 (372)
.+++.
T Consensus 358 ~~g~~ 362 (406)
T PRK15402 358 TVGIE 362 (406)
T ss_pred HHHHH
Confidence 88888
No 73
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.52 E-value=3e-13 Score=128.93 Aligned_cols=159 Identities=14% Similarity=-0.037 Sum_probs=113.9
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
.+....+.|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++.+..
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~---------- 121 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV---------- 121 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh----------
Confidence 4556667788888999999999998888899999999999999999999999988887777776655443
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
.+.+..++...+.+++.+. ..+.. .+++|.+|+++|++++++.+..+.+++.+++.
T Consensus 122 --~s~~~l~~~r~l~G~~~~~-~~~~~-~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~-------------------- 177 (476)
T PLN00028 122 --SSATGFIAVRFFIGFSLAT-FVSCQ-YWMSTMFNGKIVGTANGIAAGWGNLGGGVTQL-------------------- 177 (476)
T ss_pred --cCHHHHHHHHHHHHHHHHh-hHHHH-HHHHHhcChhheeHHHHHHHHHHHHHHHHHHH--------------------
Confidence 1123333334444443332 22332 56789999999999999998777777777665
Q ss_pred hcchhhhhhhhhhHHH----HH-----hcccchhhHHHHHHHHHHHhhhheec
Q psy17630 280 LGSLIEFVVVKTFDDV----ER-----AFGTGVAFGTFAVYCIIGTFFVYFVV 323 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~----~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~ 323 (372)
+.+.+ .+ ..|||+.|++.++++++..+..+++.
T Consensus 178 -----------~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 178 -----------LMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred -----------HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 22222 11 25899999998888877666555433
No 74
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.52 E-value=1.8e-12 Score=120.99 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=119.0
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcch
Q psy17630 92 LVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPL 171 (372)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~ 171 (372)
+++++++|..+...+.. +....+.+....+.|.+.++.|++..+.+.......++..++.+..|+++||+|||+.
T Consensus 215 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~ 289 (402)
T TIGR00897 215 ATILFTNPNVLLGGMVR-----IINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNT 289 (402)
T ss_pred HHHHHcChhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 45667776433222221 1222234556778898888889988888888888899999999999999999999887
Q ss_pred hh-HhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHH
Q psy17630 172 LL-ISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG 250 (372)
Q Consensus 172 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 250 (372)
+. .+.+...++.+.+........ .+.+.........+.+.+. ..+.. ....|..| ++|+++.|+.+...
T Consensus 290 ~~~~~~l~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~g~~~g~~~~~~ 359 (402)
T TIGR00897 290 VRWFGGVGCGIFTLALYYIPQHFG-------HSFAVALIIAIALGIFLAG-YVPLA-AVFPTLAP-KHKGAAMSVLNLSA 359 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC-------CcHHHHHHHHHHHHHHHHH-HHHHH-HHHHhhCc-chhHHHHHHHHHHH
Confidence 64 233333333222221100000 0122223333333333332 23333 44567655 58999999999999
Q ss_pred HHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630 251 SLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 320 (372)
.+++.++|. +.+.+.+..|++..+++.+++.++..+...
T Consensus 360 ~lg~~~gp~-------------------------------i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 360 GLSAFLAPA-------------------------------IAVLFIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHH-------------------------------HHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999 888999999998888888888777766554
No 75
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.52 E-value=1.6e-13 Score=126.15 Aligned_cols=163 Identities=13% Similarity=-0.037 Sum_probs=122.1
Q ss_pred HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
..+....|.+.+++|.+..+.++..+...++..++.+..|+++||+|||+++..+......+.+.....
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----------- 76 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP----------- 76 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh-----------
Confidence 456677888899999999999999999999999999999999999999987665444333332211110
Q ss_pred ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL 280 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (372)
.+.+..++...+.+.+.+. . .......+|.+|+++|++++++......+|..+++.
T Consensus 77 -~~~~~l~~~R~l~G~g~~~-~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~--------------------- 132 (368)
T TIGR00903 77 -FNYEWLLACQLLAALGQPF-L-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALA--------------------- 132 (368)
T ss_pred -ccHHHHHHHHHHHHhHhHH-H-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 0133445555555555442 2 222345589999999999999999999999999988
Q ss_pred cchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 281 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
+...+.+..|||..|.+.++++++..++.++++||+++
T Consensus 133 ----------~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~ 170 (368)
T TIGR00903 133 ----------AGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPF 170 (368)
T ss_pred ----------HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 77778888999999998888888877777777888643
No 76
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.52 E-value=2.4e-13 Score=127.30 Aligned_cols=165 Identities=13% Similarity=0.096 Sum_probs=126.5
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
......-+|.+.++++.+..+.++..+...++..++.++.|+++||+|||++++.+..+.+++.+.+...
T Consensus 32 ~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a---------- 101 (413)
T PRK15403 32 TDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT---------- 101 (413)
T ss_pred HHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc----------
Confidence 3445555666777889888999999999999999999999999999999999999988888777765543
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
.+.+..++...+.+.+.+. ..+..+.++.|.+|+++|++++++.+....++..++|.
T Consensus 102 --~~~~~l~~~r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------------------- 158 (413)
T PRK15403 102 --TSMTQFLIARFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPL-------------------- 158 (413)
T ss_pred --CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 1233444555555444432 23344577889999999999999999998899988887
Q ss_pred hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
+.+.+.+..||++.|++.+++.++..+..++.+||+++
T Consensus 159 -----------lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 159 -----------SGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred -----------HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 77777777899999998888877776665556788643
No 77
>PRK12382 putative transporter; Provisional
Probab=99.51 E-value=1.7e-12 Score=120.81 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=110.6
Q ss_pred HHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccc
Q psy17630 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (372)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
....+.+.++++.+.+ +.+.......++.+++.++.|++.||+|||+.+..+..+.+++.+.+... +
T Consensus 234 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----~------ 300 (392)
T PRK12382 234 VIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-----P------ 300 (392)
T ss_pred HHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-----c------
Confidence 3445666666666654 34555666777788999999999999999999888877777665544322 1
Q ss_pred cccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhc
Q psy17630 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILG 281 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (372)
+.+.......+.+.+.+... +.......|.+|++.|+++.++.+....++..++|.
T Consensus 301 -~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~---------------------- 356 (392)
T PRK12382 301 -TAWVALAGAALTGAGCSLIF-PALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGP---------------------- 356 (392)
T ss_pred -cHHHHHHHHHHHHHHHHhHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 12233333344444433322 233356688899999999999999999999999999
Q ss_pred chhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhhee
Q psy17630 282 SLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFV 322 (372)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
+.+.+.+..||+..+.+.+++.+++.++.+..
T Consensus 357 ---------~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 357 ---------LAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred ---------HHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999988888777777665533
No 78
>PRK10504 putative transporter; Provisional
Probab=99.51 E-value=7.6e-13 Score=126.25 Aligned_cols=151 Identities=11% Similarity=0.027 Sum_probs=100.0
Q ss_pred HHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchh
Q psy17630 94 EIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLL 172 (372)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~ 172 (372)
++++|+.++......++.. .+.....++.|++++. .|.++.+.++......++..++.++.+++.||+|||+++
T Consensus 256 ~l~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~ 330 (471)
T PRK10504 256 KLFRTRTFSLGLAGSFAGR-----IGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVL 330 (471)
T ss_pred HHhcccchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 4677764433322222221 1234455677777774 688888888888888888888999999999999999999
Q ss_pred hHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHH
Q psy17630 173 LISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSL 252 (372)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~ 252 (372)
..+..+.++..+++... .. . ...+.........+.+.+....+.. .+..+..|++.|+.++++.++...+
T Consensus 331 ~~~~~~~~~~~~~~~~~---~~-~-----~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~ 400 (471)
T PRK10504 331 VATTLGLALVSLLFMLV---AL-L-----GWYYLLPFVLFLQGMVNSTRFSSMN-TLTLKDLPDNLASSGNSLLSMIMQL 400 (471)
T ss_pred HHHHHHHHHHHHHHHhc---cc-c-----ccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHhccchHHHHHHHHHH
Confidence 88877777665554332 10 0 1112222223333334443333333 6667889999999999999999999
Q ss_pred HHHHHHH
Q psy17630 253 IEFVVVK 259 (372)
Q Consensus 253 ~~~~~~~ 259 (372)
+..+++.
T Consensus 401 g~~ig~~ 407 (471)
T PRK10504 401 SMSIGVT 407 (471)
T ss_pred HHHHHHH
Confidence 9988887
No 79
>KOG1330|consensus
Probab=99.51 E-value=2.7e-14 Score=128.60 Aligned_cols=174 Identities=15% Similarity=0.105 Sum_probs=135.3
Q ss_pred HHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHH
Q psy17630 112 LCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFY 191 (372)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~ 191 (372)
....+...-+.+....+.+-+.+|.+....++++....++..+.++++|+++||+.||+++.+|..+..++.+..++..
T Consensus 41 vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~- 119 (493)
T KOG1330|consen 41 VNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN- 119 (493)
T ss_pred HHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH-
Confidence 3333333345555666666667799999999999999999999999999999999999999999999999988887762
Q ss_pred HhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccc
Q psy17630 192 LLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKG 271 (372)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (372)
..|.+++...+.+++-+ .+.++...+++|.+|.++|++.+++.++...+|..++-.
T Consensus 120 -----------~Fwq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~v------------ 175 (493)
T KOG1330|consen 120 -----------HFWQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYV------------ 175 (493)
T ss_pred -----------HHHHHHHHHHHhccchh-hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEE------------
Confidence 24566666666666655 455566689999999999999999999888777655443
Q ss_pred cchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHHhhhheeccCCCCC
Q psy17630 272 LALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYFVVPETKNK 329 (372)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 329 (372)
....+....+ ||+.|...+++.++..++..++.+|.+++
T Consensus 176 -------------------vgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 176 -------------------VGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG 215 (493)
T ss_pred -------------------eeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccc
Confidence 2223333333 99999999999999999888888887654
No 80
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.51 E-value=2.6e-13 Score=128.18 Aligned_cols=163 Identities=11% Similarity=0.044 Sum_probs=117.7
Q ss_pred HHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccccc
Q psy17630 123 VIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG 202 (372)
Q Consensus 123 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (372)
.....|.+. +.|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.+........ . .
T Consensus 46 ~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~--~------~ 116 (438)
T TIGR00712 46 FALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA--T------S 116 (438)
T ss_pred HHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc--c------c
Confidence 344556554 469999999999999999999999999999999999999998888887776665432100 0 0
Q ss_pred ccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcc
Q psy17630 203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGS 282 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (372)
+.+...+...+.+.+.+....+.. ..+.|.+|+++|++++++.+....+++.+++.
T Consensus 117 ~~~~l~~~~~l~g~~~g~~~~~~~-~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~----------------------- 172 (438)
T TIGR00712 117 SIAIMFVLLFLNGWFQGMGWPPCG-RTMVHWWSQSERGTIVSIWNCAHNIGGGIPPL----------------------- 172 (438)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHH-HHHHHhcCcccchhHHHHHHHHHHhHhHHHHH-----------------------
Confidence 122233334444444444444333 67789999999999999999988888888877
Q ss_pred hhhhhhhhhhHHHHH-hcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630 283 LIEFVVVKTFDDVER-AFGTGVAFGTFAVYCIIGTFFVYFVVPET 326 (372)
Q Consensus 283 ~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 326 (372)
+.....+ ..+||..|++.++++++..+..++++||+
T Consensus 173 --------l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 173 --------LVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred --------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 5544333 46899999988888877766666667764
No 81
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.50 E-value=5.7e-13 Score=124.63 Aligned_cols=165 Identities=13% Similarity=0.024 Sum_probs=123.4
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
...+....|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---------- 98 (406)
T PRK15402 29 NDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA---------- 98 (406)
T ss_pred hhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----------
Confidence 3445556677788889999999999999999999999999999999999999999888887777665443
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
++.+..+....+.+.+.+. ..+..+.++.|.+|++.|....++......++..++|.
T Consensus 99 --~~~~~l~~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------------------- 155 (406)
T PRK15402 99 --QSIEQFTLLRFLQGIGLCF-IGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPL-------------------- 155 (406)
T ss_pred --ccHHHHHHHHHHHHhHhhh-HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 0123333333443333332 23344577789999999999888888777778888887
Q ss_pred hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
+.+.+.+..+|++.+++.++++++..+..++..||+++
T Consensus 156 -----------i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 156 -----------VGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred -----------HHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 77777788899999988888877776665556777643
No 82
>PRK10504 putative transporter; Provisional
Probab=99.50 E-value=5.7e-13 Score=127.12 Aligned_cols=166 Identities=10% Similarity=-0.015 Sum_probs=126.8
Q ss_pred hhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcc
Q psy17630 117 FSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD 196 (372)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (372)
...........|.+.+++|.+..+.++..+...++..++.++.|+++||+|||++++.+.++..++.+.+...
T Consensus 23 ~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~------- 95 (471)
T PRK10504 23 SLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS------- 95 (471)
T ss_pred HHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-------
Confidence 3334566778899999999999999999888899999999999999999999999998877777766654432
Q ss_pred ccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhh
Q psy17630 197 EKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGV 276 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (372)
.+.+..++...+.+.+.+.. .+....++.|.+|++.|+++.++......++..++|.
T Consensus 96 -----~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~----------------- 152 (471)
T PRK10504 96 -----GTLNELLLARVLQGVGGAMM-VPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPA----------------- 152 (471)
T ss_pred -----CCHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhH-----------------
Confidence 11233444455554444432 3344577889999999999999999999999999998
Q ss_pred hhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630 277 ICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET 326 (372)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 326 (372)
+.+.+.+..+|++.|.+...++.+..+......|+.
T Consensus 153 --------------~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 153 --------------LGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred --------------HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 888888889999999887777666666655455543
No 83
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.50 E-value=1.1e-12 Score=122.66 Aligned_cols=163 Identities=18% Similarity=0.165 Sum_probs=120.5
Q ss_pred chHHHHHhhHHHHHhcCCCCCCh-----hhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHh
Q psy17630 119 GINVVIFYLKRILIATNSKIISP-----NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLL 193 (372)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~ 193 (372)
+......+.|.+.++.|.+..+. +...+...+...++.++.|+++||+|||+.+..+.+..+++.+++...
T Consensus 29 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---- 104 (408)
T PRK09874 29 AFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA---- 104 (408)
T ss_pred HHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH----
Confidence 34556677888888888776553 677788888999999999999999999999998887777766654432
Q ss_pred hccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccc
Q psy17630 194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLA 273 (372)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (372)
.+.+..++...+.+.+. +..+....++.|.+|+++|+.+.++......++..++|.
T Consensus 105 --------~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------- 160 (408)
T PRK09874 105 --------QNIWQFLILRALLGLLG--GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPL-------------- 160 (408)
T ss_pred --------hhHHHHHHHHHHHHHhh--hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHH--------------
Confidence 01233344444443332 223333356788899999999999999888888888888
Q ss_pred hhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630 274 LGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET 326 (372)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 326 (372)
+.+.+.+..+|+..+++.+++.++..+...++.||+
T Consensus 161 -----------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 161 -----------------AGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred -----------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 777788888999999888887777766665566654
No 84
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.50 E-value=2.8e-13 Score=123.75 Aligned_cols=163 Identities=18% Similarity=0.152 Sum_probs=124.4
Q ss_pred hHHHHHhhH-HHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630 120 INVVIFYLK-RILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (372)
Q Consensus 120 ~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
........| .+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++..+. .
T Consensus 12 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~--- 83 (352)
T PF07690_consen 12 FSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-----S--- 83 (352)
T ss_dssp HHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-----C---
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-----h---
Confidence 344556666 6667789999999999999999999999999999999999999999988888884444322 1
Q ss_pred ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC 278 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (372)
+.+..++...+.+.+.+.. .+....++.|.+|+++|++++++......++..++|.
T Consensus 84 ----~~~~~~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~------------------- 139 (352)
T PF07690_consen 84 ----NFWLLLIARFLLGIGSGFF-SPASNALIADWFPPEERGRAFGILSAGFSLGSILGPL------------------- 139 (352)
T ss_dssp ----CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred ----hHHHHhhhccccccccccc-cccccccccccchhhhhhhccccccchhhhhhhcccc-------------------
Confidence 1334455555555554433 3444588899999999999999999999999999998
Q ss_pred hhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630 279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET 326 (372)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 326 (372)
+.+.+.+..+|+..+++.++++++..++...+.+++
T Consensus 140 ------------l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 140 ------------LGGFLISYFGWRWAFLISAILSLIAAILFILFLPEP 175 (352)
T ss_dssp ------------HHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---
T ss_pred ------------hhhhhhhccccccccccccchhhhhhhhHhhhhhhc
Confidence 777777788899999999998888877544455443
No 85
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.49 E-value=1.3e-12 Score=121.03 Aligned_cols=195 Identities=14% Similarity=0.057 Sum_probs=118.1
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (372)
||+.|++. +++.++..++.++.+||+++. +++ .+ .++...++++.
T Consensus 158 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~---------------~~--------------~~~~~~~~~~~ 202 (385)
T TIGR00710 158 WHAIFAFL---SLAGILLSALIFFILPETLPY---EAR---------------IQ--------------ISTYFETFLLL 202 (385)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHhCCCCCCC---ccc---------------CC--------------HHHHHHHHHHH
Confidence 99999998 677776666666677886531 000 00 00111235566
Q ss_pred HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 174 (372)
+++++.+...+...... ........+.|.+.+ +.|.++.+.+.......++.+++.++.|++.||+|||+.+..
T Consensus 203 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 277 (385)
T TIGR00710 203 LKSKMFWGYALIYGASF-----GGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRM 277 (385)
T ss_pred HcCchhHHHHHHHHHHH-----HHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77764443332221111 123344556676665 568888888999999999999999999999999999999888
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHH
Q psy17630 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE 254 (372)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 254 (372)
+..+..++.+.+......... ............+.+.+.... ....+..|..| +.|+++.++.+.....++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g 348 (385)
T TIGR00710 278 GLILFAVSAVLLEITAILGLG-------SWAMIIGPMMFVGIGNSMISS-IAMAYALEDFP-HVAGTASALFGTLRLVLG 348 (385)
T ss_pred HHHHHHHHHHHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCc-ccchHHHHHHHHHHHHHH
Confidence 877766665554332111100 112222223333333333322 33356677777 578999999888877766
Q ss_pred HHHHH
Q psy17630 255 FVVVK 259 (372)
Q Consensus 255 ~~~~~ 259 (372)
.+.+.
T Consensus 349 ~i~~~ 353 (385)
T TIGR00710 349 AIVGY 353 (385)
T ss_pred HHHHH
Confidence 66665
No 86
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.49 E-value=4.4e-13 Score=126.58 Aligned_cols=193 Identities=12% Similarity=0.011 Sum_probs=113.4
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (372)
||+.+.+. +++.++..++.++.+||.++. +.++ ++ ++...++.++++
T Consensus 172 ~~~~~~i~---~~l~~~~~~~~~~~~~e~~~~-----~~~~---------~~----------------~~~~~~~~~~~l 218 (437)
T TIGR00792 172 WFMFALVL---ALIGVVSLIICFFGTKERYSE-----IPKN---------IE----------------KKLSLKQIFKAL 218 (437)
T ss_pred HHHHHHHH---HHHHHHHHHHHHcCCEecCCC-----CCcc---------cc----------------cCCCHHHHHHHH
Confidence 99999998 788877666777788886520 0000 00 000112235666
Q ss_pred HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 174 (372)
++++.++...+..++.... ......+.+.+.+.. + +....+.......++.+++.+++++++||+|||+.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~ 292 (437)
T TIGR00792 219 FKNDQLLILCLAYLFYNLA-----FNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAG 292 (437)
T ss_pred hCCHHHHHHHHHHHHHHHH-----HHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 7776444332222222211 222222334333332 3 34455666677788899999999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCC-------cchhhhHHHHHH
Q psy17630 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT-------PDVKGLALGVIC 247 (372)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~ 247 (372)
+.++.+++.+.+.+. . . +.+...+...+.+++.+.. .+..+++++|..+ .+.+|...++.+
T Consensus 293 ~~~~~~~~~~~~~~~---~-~-------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 360 (437)
T TIGR00792 293 GILLMVLGYLIFFFA---G-S-------NLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRT 360 (437)
T ss_pred HHHHHHHHHHHHHHc---c-h-------hHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHH
Confidence 877777665554322 0 1 1223333333333343333 3344567777754 455688999999
Q ss_pred HHHHHHHHHHHH
Q psy17630 248 ILGSLIEFVVVK 259 (372)
Q Consensus 248 ~~~~~~~~~~~~ 259 (372)
....++..+++.
T Consensus 361 ~~~~~g~~lg~~ 372 (437)
T TIGR00792 361 FVRKLGQALAGF 372 (437)
T ss_pred HHHHHHHHHHHH
Confidence 999999888887
No 87
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.49 E-value=2.1e-12 Score=118.56 Aligned_cols=123 Identities=10% Similarity=-0.018 Sum_probs=92.2
Q ss_pred HhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccc
Q psy17630 125 FYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGL 203 (372)
Q Consensus 125 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (372)
.+.|.+.++ .|.+..+.+.......++.+++.++.+++.||++||+.+..+..+.+++........ .+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 300 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP-----------PN 300 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc-----------hh
Confidence 567777776 588888889999999999999999999999999999988877666666555443320 01
Q ss_pred cHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.+...+...+.+.+.+.. .+....++.|..|++.|+++.++.+....++..++|.
T Consensus 301 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~ 355 (365)
T TIGR00900 301 FPLFLVLWFAIGVGYGPI-NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLI 355 (365)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334444444444433 3344478899999999999999999999999999998
No 88
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.48 E-value=5.2e-12 Score=117.54 Aligned_cols=149 Identities=9% Similarity=0.008 Sum_probs=93.9
Q ss_pred HhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccccccc
Q psy17630 125 FYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLG 204 (372)
Q Consensus 125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (372)
+..|.+.++.|++..+.+......+++.+++.++.+++.||.+| +.++.+..+..+..+.+... . .+.
T Consensus 238 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~---~--------~~~ 305 (394)
T PRK10213 238 YIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLTLW---G--------SDK 305 (394)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHH---h--------hhH
Confidence 33477777789898888998999999999999999999999644 44333333333322222111 0 012
Q ss_pred HHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchh
Q psy17630 205 LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLI 284 (372)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (372)
+.......+.+.+++....... +++.+..| +.++...+.......++..+++.
T Consensus 306 ~~~~~~~~l~G~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~------------------------- 358 (394)
T PRK10213 306 IVATGVAIIWGLTFALVPVGWS-TWITRSLA-DQAEKAGSIQVAVIQLANTCGAA------------------------- 358 (394)
T ss_pred HHHHHHHHHHHHHHHhhhHHHH-HHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 3334444444444443333333 45566666 44556666666777888888998
Q ss_pred hhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhh
Q psy17630 285 EFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFF 318 (372)
Q Consensus 285 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 318 (372)
+.+.+.+..|++..+...+.+.++..+.
T Consensus 359 ------l~G~l~~~~g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 359 ------IGGYALDNIGLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred ------HHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence 8888989888877776665555444433
No 89
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.48 E-value=1.1e-12 Score=125.50 Aligned_cols=168 Identities=14% Similarity=0.020 Sum_probs=108.5
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHH
Q psy17630 135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIY 214 (372)
Q Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (372)
+.+..+.++..+...++..++.+++|+++||+|||++++.+.++..++.+..++...................++...+.
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~ 130 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIG 130 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHH
Confidence 66778889999999999999999999999999999999999888877766654421110000000000112333444555
Q ss_pred HHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHH
Q psy17630 215 IIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDD 294 (372)
Q Consensus 215 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (372)
+.+.+.... ...++++|.+|+++|+.++++......+|..+++.. ++.... .....
T Consensus 131 G~~~g~~~~-~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~--------------------~~~~~~---~~~~~ 186 (479)
T PRK10077 131 GIGVGLASM-LSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFV--------------------NYFIAR---SGDAS 186 (479)
T ss_pred hhhHhHHhh-HHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHH--------------------HHHHhc---cCccc
Confidence 555444333 444889999999999999999887777777666540 000000 00011
Q ss_pred HHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 295 VERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 295 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
..+..+||+.|++.++..++..+. .+++||+.
T Consensus 187 ~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~ 218 (479)
T PRK10077 187 WLNTDGWRYMFASEAIPALLFLML-LYFVPETP 218 (479)
T ss_pred ccccCChHHHHHHHHHHHHHHHHH-HHcCCCCc
Confidence 224568999998877766665544 45688874
No 90
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.47 E-value=2.7e-12 Score=119.09 Aligned_cols=175 Identities=13% Similarity=0.016 Sum_probs=113.5
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP 170 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~ 170 (372)
++++++|+|..+......++.... ......+.|.+.++.|.+..+.+.......+..++..++.+++.||+|+|+
T Consensus 197 ~~~~i~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 271 (382)
T PRK11128 197 AWKALLKEPTVWRFLLCVSLLQGS-----HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD 271 (382)
T ss_pred hHHHHHcChhHHHHHHHHHHHHHH-----hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 467788887554433333322222 223344556666778888888898888888899999999999999999999
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHH-
Q psy17630 171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL- 249 (372)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~- 249 (372)
.+..+.+..++..+..... ++.+..++...+.+.+.+....... .+..+. +++++++..++.+..
T Consensus 272 ~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~ 337 (382)
T PRK11128 272 LLLLSAICGVVRWGLMGST------------TALPWLIVIQILHCGTFTVCHLAAM-RYIAAR-PGSEVIRLQALYSALA 337 (382)
T ss_pred HHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHC-CHhhhHHHHHHHHHHH
Confidence 9888887777765544322 1234444445555555444333333 555665 555668888877633
Q ss_pred HHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHH
Q psy17630 250 GSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT 316 (372)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 316 (372)
..++..++|. +.+.+.+..|+ ..++..+++.+++.
T Consensus 338 ~~~g~~ig~~-------------------------------i~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 338 MGGSIAIMTV-------------------------------LSGFLYQHLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHH-------------------------------HHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 4556678888 88888888887 45555555555443
No 91
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.47 E-value=2.2e-12 Score=120.49 Aligned_cols=182 Identities=12% Similarity=0.030 Sum_probs=103.4
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHH-HHHHHHHHHHHHHHhhcCCc
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVG-FIQVIMTFFSSLLVDKAGRR 169 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~grr 169 (372)
++++++++|..+......++....... ......+.+.++.|++..+.++.....+ ++.+++.+++|++.||+|||
T Consensus 201 ~~~~l~~~~~~~~~l~~~~l~~~~~~~----~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~ 276 (402)
T PRK11902 201 PLRDFFSRRGAWALLLLIVLYKLGDAF----AGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY 276 (402)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHhHHHH----HHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 466788887544433333222222111 1122334445557888888888775544 56889999999999999999
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHH----HHHhhcccccccceeeeccCCCcchhhhHHHH
Q psy17630 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI----YIIVFSVGFGPIPGVMMGELFTPDVKGLALGV 245 (372)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 245 (372)
+.+..+..+..+..+.+....... + +.+.......+ .+...+. .......++.+.+|.+.++ +
T Consensus 277 ~~l~~~~~~~~l~~l~~~~~~~~~-~-------~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~----~ 343 (402)
T PRK11902 277 RSLMLFGVLQAVSNLGYWVLAVTP-K-------HLWTMALAIGIENLCGGMGTAA-FVALLMALCNRSFSATQYA----L 343 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-C-------cHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCcHHHHH----H
Confidence 988776666555443332211110 1 12222222221 1112222 2223336667777766554 3
Q ss_pred HHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630 246 ICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 320 (372)
.+....++...++. +.+.+.+..||+..|.+.+.+++++.++.+
T Consensus 344 ~~~~~~l~~~~~~~-------------------------------~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 344 LSALASVGRVYVGP-------------------------------TSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHHHHH-------------------------------HHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555 777788999998888888877777765543
No 92
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.47 E-value=1.2e-12 Score=121.84 Aligned_cols=164 Identities=15% Similarity=0.074 Sum_probs=120.7
Q ss_pred HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
.......|.+.++.|.+..+.++......++..++.++.|+++||+|||+.+..+.++..++.+..... .
T Consensus 25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~----- 94 (394)
T PRK11652 25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-----H----- 94 (394)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----c-----
Confidence 344455778888899999999999999999999999999999999999999999888777776654332 1
Q ss_pred ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL 280 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (372)
+.+..++...+.+.+.+.. .+....+..|.++.+.|+.+.+..+....++..++|.
T Consensus 95 --~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------------------- 150 (394)
T PRK11652 95 --SLTVLIAASAIQGLGTGVG-GVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPL--------------------- 150 (394)
T ss_pred --cHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 1233334444443333322 2333356688888888999999888888888888887
Q ss_pred cchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 281 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
+.+.+.+..+|+..+++.+++.++..+...++.||+++
T Consensus 151 ----------i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 151 ----------IGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred ----------HHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 77777778899999988877766655555556777543
No 93
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.47 E-value=9.4e-13 Score=120.89 Aligned_cols=162 Identities=15% Similarity=0.048 Sum_probs=122.0
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
........|.+..+.+.+..+.++..+...++..++.++.|+++||+|||++++.+.++..++.++.........
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~----- 89 (365)
T TIGR00900 15 TAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG----- 89 (365)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC-----
Confidence 344556667777888888889999999999999999999999999999999999988887777666544421110
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
.+.+..++...+.+.+.+.. .+...+++.|.+|+++|++.+++.+....++..++|.
T Consensus 90 --~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-------------------- 146 (365)
T TIGR00900 90 --LNIWQVYVLAGILAIAQAFF-TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPG-------------------- 146 (365)
T ss_pred --CcHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHH--------------------
Confidence 12344444455554444433 3444488899999999999999999999999999998
Q ss_pred hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630 280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 320 (372)
+.+.+.+..+|+..+++.++..++..+..+
T Consensus 147 -----------l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 147 -----------IGGLMYATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred -----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 888888888999888877766655544433
No 94
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.47 E-value=4.3e-12 Score=115.65 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=124.7
Q ss_pred hHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcc-hhhHhhHHHHHHHHHHHHHHHHhhccc
Q psy17630 120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP-LLLISDICMAICIGALGYYFYLLKLDE 197 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (372)
......+.|.+.++. |.+..+.+.......++..++.++.+++.||+|||+ .+..+..+..++.+.....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------- 262 (352)
T cd06174 191 YYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-------- 262 (352)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh--------
Confidence 455667777777776 888889999999999999999999999999999999 8888888887777765443
Q ss_pred cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhh
Q psy17630 198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVI 277 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (372)
.+.+.......+.+.+.+.. .+....+..|..|+++|++.+++.+....++..+++.
T Consensus 263 ----~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------------ 319 (352)
T cd06174 263 ----PSLALLLVALLLLGFGLGFA-FPALLTLASELAPPEARGTASGLFNTFGSLGGALGPL------------------ 319 (352)
T ss_pred ----ccHHHHHHHHHHHHHHHhcc-chhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 01233344444444444443 3455588899999999999999999999999999999
Q ss_pred hhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630 278 CILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 320 (372)
+.+.+.+..+|+..+.+.+++.+++.+..+
T Consensus 320 -------------i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 320 -------------LAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred -------------HHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 888888888999899888888888776654
No 95
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.47 E-value=2.5e-12 Score=123.63 Aligned_cols=116 Identities=12% Similarity=0.027 Sum_probs=85.3
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHH
Q psy17630 137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII 216 (372)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (372)
+..+.++......++.+++.+++|+++||+|||+.+.++.++..++.++.+.... ... ..+.+..++...+.++
T Consensus 54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~--~~~----~~~~~~~~~~r~l~G~ 127 (502)
T TIGR00887 54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG--SSP----KSVMATLCFWRFWLGV 127 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC--ccc----chHHHHHHHHHHHHHH
Confidence 3445678888999999999999999999999999999988888887776554310 000 0012344555555555
Q ss_pred hhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+.+.... ....+++|.+|++.|++++++.+....+|..+++.
T Consensus 128 ~~g~~~~-~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~ 169 (502)
T TIGR00887 128 GIGGDYP-LSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAI 169 (502)
T ss_pred HHhhhhH-HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444 44489999999999999999999888888877765
No 96
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.47 E-value=1.6e-12 Score=124.73 Aligned_cols=130 Identities=9% Similarity=-0.094 Sum_probs=95.0
Q ss_pred hHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630 120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (372)
Q Consensus 120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
.....++.|.++++ .|+++.+.+....+..++..++.++.|++.||+|||+.+..+.++.+++.+.+... ...
T Consensus 275 ~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~---~~~--- 348 (495)
T PRK14995 275 LVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT---DFS--- 348 (495)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh---cCC---
Confidence 34556677777776 49999999999999999999999999999999999998888877776665544322 111
Q ss_pred ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
...+.......+.+.+.+....+.. ..+.+..|+++++.+.++.+....+|+.+++.
T Consensus 349 ---~~~~~~~~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~a 405 (495)
T PRK14995 349 ---TQQWQAWGLMALLGFSAASALLAST-SAIMAAAPPEKAAAAGAIETMAYELGAGLGIA 405 (495)
T ss_pred ---CchHHHHHHHHHHHHhHHHHHHHHH-HHHHhcCCHHhcchHHHHHHHHHHHHHHHHHH
Confidence 1123333444455555554443343 55677889999999999999999999888887
No 97
>PRK03699 putative transporter; Provisional
Probab=99.47 E-value=1.5e-12 Score=121.34 Aligned_cols=156 Identities=10% Similarity=0.045 Sum_probs=118.0
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
........|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+.++..++.++..+.
T Consensus 23 ~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~---------- 92 (394)
T PRK03699 23 VIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS---------- 92 (394)
T ss_pred HHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc----------
Confidence 4566677888888999999999999999999999999999999999999999998888877777665443
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
++.+..++...+.+.+.+.... ....++.|.+|++.|+.+.+..+....+++.++|.
T Consensus 93 --~~~~~~~~~~~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~-------------------- 149 (394)
T PRK03699 93 --HSLALFSIAMFVLGVVSGITMS-IGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPI-------------------- 149 (394)
T ss_pred --chHHHHHHHHHHHHHhhHhhcc-chhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 1123344444555554444433 33367799999999999998888777788888887
Q ss_pred hcchhhhhhhhhhHHHHH-hcccchhhHHHHHHHHHHHhhh
Q psy17630 280 LGSLIEFVVVKTFDDVER-AFGTGVAFGTFAVYCIIGTFFV 319 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~ 319 (372)
..+.+.. ..+||+.|.+.+++.++..++.
T Consensus 150 -----------~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 150 -----------IAAYLLARSIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred -----------HHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 6665554 5689999988777766655443
No 98
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.46 E-value=3.5e-12 Score=114.09 Aligned_cols=227 Identities=19% Similarity=0.248 Sum_probs=155.8
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (372)
||....+- .+..++..+..++.+.|.|......+ +.....++.+
T Consensus 171 w~~~~~i~---~~~l~v~~v~~~~~~~d~p~~r~~~~---------------------------------~~~~~~~~~v 214 (417)
T COG2223 171 WRNVAGIY---VVALAIAAVLAWLGMNDVPEHRASVK---------------------------------PQLPAQLKAV 214 (417)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHhCCChhhhcccc---------------------------------ccchhHHHHH
Confidence 88888887 55555657777788888774210000 0000235566
Q ss_pred HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 174 (372)
++++..|... +.....+.++..+..++|.++++ +|.+..+++.......+.+.+..+.+|+++||+|.++++.+
T Consensus 215 ~~~~~~W~ls-----llY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~ 289 (417)
T COG2223 215 FSNKDTWLLS-----LLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLA 289 (417)
T ss_pred hcCcchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHH
Confidence 6665333222 22333333456777888887766 49999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHH
Q psy17630 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE 254 (372)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 254 (372)
....++++..+......... ...+....+..+.......+.+.+.+. .+++..+|. +-|...|+....+.+|+
T Consensus 290 ~f~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~l~l~~~~G~GnGsvf-k~Ip~if~~-~~G~v~G~vga~G~lGG 362 (417)
T COG2223 290 VFVGMALAAALLSLFLTGFG-----HGGSFVVFVAVFLALFVFAGLGNGSVF-KMIPVIFPK-ETGAVTGIVGAIGGLGG 362 (417)
T ss_pred HHHHHHHHHHHHHccccccc-----cCcchHHHHHHHHHHHHHhccCcchhe-eechHHHHh-hhhHHHHHHHHhccccc
Confidence 88888877776544311110 012233444444555556666666554 788888875 45788899999999999
Q ss_pred HHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHHhhhhe
Q psy17630 255 FVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYF 321 (372)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 321 (372)
+..|. .++...+..| +...|+++..+.+++.++.+.
T Consensus 363 f~lp~-------------------------------~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 363 FFLPL-------------------------------AFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred cchhH-------------------------------HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 98888 8888888888 666888888888888776653
No 99
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.46 E-value=1.8e-12 Score=121.65 Aligned_cols=167 Identities=13% Similarity=0.021 Sum_probs=119.1
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
........|.+.++.+.+..+.++......++..+++++.|+++||+|||+.+..+..+.+++.+.+........+
T Consensus 33 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~---- 108 (417)
T PRK10489 33 LGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEP---- 108 (417)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCC----
Confidence 3455667788888887788899999999999999999999999999999999988877776665554322111111
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
+.+...+...+.+.+.+....+. ..++.|..|+++|+++.++.+....++..++|.
T Consensus 109 ---~~~~l~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-------------------- 164 (417)
T PRK10489 109 ---SLLAIYLLGLWDGFFGSLGVTAL-LAATPALVGRENLMQAGAITMLTVRLGSVISPA-------------------- 164 (417)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHH-hhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHH--------------------
Confidence 12333333334344333333333 367889999999999999998888999999988
Q ss_pred hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630 280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET 326 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 326 (372)
+.+.+.+..+|++.+.+.++..++..+.. +.+|++
T Consensus 165 -----------l~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 199 (417)
T PRK10489 165 -----------LGGLLIAAGGVAWNYGLAAAGTFITLLPL-LRLPAL 199 (417)
T ss_pred -----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 77777787888888877666655555443 355654
No 100
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.45 E-value=4.8e-13 Score=127.40 Aligned_cols=166 Identities=13% Similarity=-0.083 Sum_probs=120.8
Q ss_pred HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
..+....|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.++..+.++.......+
T Consensus 46 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~----- 120 (467)
T PRK09556 46 KNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSV----- 120 (467)
T ss_pred cChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccc-----
Confidence 344566788889999999999999999999999999999999999999999998888887777665543211111
Q ss_pred ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL 280 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (372)
+.+..++...+.+.+.+.... ....+++|.+|+++|++++++......+|+.+++.
T Consensus 121 --~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~--------------------- 176 (467)
T PRK09556 121 --SLGLMIALWALSGFFQSTGGP-CSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGG--------------------- 176 (467)
T ss_pred --hHHHHHHHHHHHHHHHhccch-HHHHHHHHHcCccceeeeEEeeecccchhhhHHHH---------------------
Confidence 234445555555555555444 34478899999999999999998888888888876
Q ss_pred cchhhhhhhhhhHHHHHhc---ccchhhHHHHHHHHHHHhhhheeccC
Q psy17630 281 GSLIEFVVVKTFDDVERAF---GTGVAFGTFAVYCIIGTFFVYFVVPE 325 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~e 325 (372)
+.....+.. +|+..|.+.+++.++..++.+++.++
T Consensus 177 ----------i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~ 214 (467)
T PRK09556 177 ----------VALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSD 214 (467)
T ss_pred ----------HHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence 444444332 57777777777766665555544443
No 101
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.45 E-value=6.6e-13 Score=126.43 Aligned_cols=152 Identities=11% Similarity=-0.051 Sum_probs=115.7
Q ss_pred hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHH
Q psy17630 133 ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA 212 (372)
Q Consensus 133 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (372)
+++++..+.+.......++..++.++.|+++||+|||+.+..+.++..++.++..... .. ..+..++...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---~~-------~~~~l~~~r~ 139 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA---GG-------GIALVVFCRV 139 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH---Hc-------CchHHHHHHH
Confidence 4577888889999999999999999999999999999999998888777766543321 00 1233444445
Q ss_pred HHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhh
Q psy17630 213 IYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTF 292 (372)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (372)
+.+.+.+.. .+....+++|.+|+++|++++++......++..+++. +.
T Consensus 140 ~~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~-------------------------------l~ 187 (465)
T TIGR00894 140 IQGLAQGSV-SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLP-------------------------------IS 187 (465)
T ss_pred HHHHhcccc-hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HH
Confidence 554444433 3444478899999999999999999999999999998 77
Q ss_pred HHHHHh-cccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630 293 DDVERA-FGTGVAFGTFAVYCIIGTFFVYFVVPET 326 (372)
Q Consensus 293 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 326 (372)
+.+.+. .+|+..|.+.+++.++..++.+.+.+|+
T Consensus 188 ~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 188 GWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred HHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 888787 4999999988888777666555445443
No 102
>PRK03699 putative transporter; Provisional
Probab=99.45 E-value=1.5e-12 Score=121.25 Aligned_cols=156 Identities=7% Similarity=-0.094 Sum_probs=107.6
Q ss_pred hHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630 120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (372)
Q Consensus 120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
.+....+.|.+.++ .|++..+.+.......++..++.++.|+++||++||+.+.....+..+...++... +
T Consensus 221 ~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-----~--- 292 (394)
T PRK03699 221 QLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT-----D--- 292 (394)
T ss_pred HHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc-----C---
Confidence 44566788888855 59999999999999999999999999999999999998877665555443332211 1
Q ss_pred ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC 278 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (372)
+.+.........+.+.+..+ +....+..|..| +.++...+.....+.+++.++|.
T Consensus 293 ----~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~------------------- 347 (394)
T PRK03699 293 ----DPSHLLYAILGLGFFSSAIY-TTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFV------------------- 347 (394)
T ss_pred ----CchHHHHHHHHHHHHHHHHH-HHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHH-------------------
Confidence 12222233333333332222 233245566665 34567778888888899999999
Q ss_pred hhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630 279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 320 (372)
+.+.+.+..|++..+++.+++++++.+.+.
T Consensus 348 ------------~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 348 ------------VTSPIVAHFGLQAALLTANGLYAVVFVMCI 377 (394)
T ss_pred ------------HHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence 889999999998888887777776655443
No 103
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.45 E-value=2.1e-12 Score=118.92 Aligned_cols=127 Identities=16% Similarity=0.008 Sum_probs=96.4
Q ss_pred hHHHHHhhHH-HHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630 120 INVVIFYLKR-ILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (372)
Q Consensus 120 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
......+.|. +.+++|.+..+.++......++..++.++.|+++||+|||+.++++.++..++.+++.....
T Consensus 17 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~------- 89 (366)
T TIGR00886 17 WFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ------- 89 (366)
T ss_pred HHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 4566777785 66788999999999999999999999999999999999999999999888888777655410
Q ss_pred ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+.+..++...+.+.+.+ ...+ ...++.|.+|+++|+.+.++......++..+++.
T Consensus 90 ----~~~~~~~~~~~~g~~~~-~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 144 (366)
T TIGR00886 90 ----SYSVLLLLRLFIGIAGG-SFAS-CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQF 144 (366)
T ss_pred ----hHHHHHHHHHHHHHhch-hhHh-HHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHH
Confidence 12333444444444322 2333 3467899999999999999988777777766665
No 104
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.45 E-value=8.5e-12 Score=116.32 Aligned_cols=189 Identities=17% Similarity=0.152 Sum_probs=117.5
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP 170 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~ 170 (372)
+..+.+|+|..|...++. ++.+.++..+.+++|.+.++ .++............+...+..+++|+++||+|+|+
T Consensus 244 ~~~~vlk~~~~Wllslly-----~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~ 317 (462)
T PRK15034 244 DQLPVLQRLHLWLLSLLY-----LATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR 317 (462)
T ss_pred HHHHHhCCCchhHHHHHH-----HHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH
Confidence 356678887544333322 22333355667788888766 333333333344556778888999999999999999
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCc--------------
Q psy17630 171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP-------------- 236 (372)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------------- 236 (372)
++.++.+...++........ .... ..+.+.....+.......+.+.+++. -++++.+|+
T Consensus 318 vl~~~~i~~~i~~~~~~l~l--p~~~----~~~~~~~~~~~~~l~~~~G~gngsvf-k~ip~~f~~~~~~~~~~~~~~~~ 390 (462)
T PRK15034 318 VTLINFIFMAIFSALLFLTL--PGTG----SGNFIAFYAVFMGLFLTAGLGSGSTF-QMIAVIFRQITIYRVKMKGGSDE 390 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cccc----ccHHHHHHHHHHHHHHHhcccchHHH-HhhHHHHhhhhhhcccccccchh
Confidence 99988877776664432221 1100 01123333333333345555555444 677777774
Q ss_pred -------chhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHH
Q psy17630 237 -------DVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTF 308 (372)
Q Consensus 237 -------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~ 308 (372)
++-|...|+....+.+|+++.|. .++...+..| +...|+.+
T Consensus 391 ~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~-------------------------------~~g~~~~~~g~~~~~~~~~ 439 (462)
T PRK15034 391 QAQREAVTETAAALGFISAIGAVGGFFIPQ-------------------------------AFGMSLNMTGSPVGAMKVF 439 (462)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcccchhhH-------------------------------HHHHHHHHcCCcHHHHHHH
Confidence 13466778888888888888887 7777777665 44477788
Q ss_pred HHHHHHHHhhhheec
Q psy17630 309 AVYCIIGTFFVYFVV 323 (372)
Q Consensus 309 ~~~~~~~~~~~~~~~ 323 (372)
.+..+++.++.+.++
T Consensus 440 ~~~~~~~~~~~w~~y 454 (462)
T PRK15034 440 LIFYIVCVLLTWLVY 454 (462)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888887777543
No 105
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.45 E-value=7e-13 Score=122.68 Aligned_cols=163 Identities=14% Similarity=0.107 Sum_probs=126.8
Q ss_pred HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
.......|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+.+....
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~---------- 77 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ---------- 77 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc----------
Confidence 3455677888888999999999999999999999999999999999999999999888888877765431
Q ss_pred ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL 280 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (372)
+.+.......+.+.+.+. ..+....++.|.+|+++|++++++.+....++..++|.
T Consensus 78 --~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------------------- 133 (377)
T PRK11102 78 --TIDQLIYMRFLHGLAAAA-ASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPI--------------------- 133 (377)
T ss_pred --cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 123333444444444332 22334477899999999999999999999999999988
Q ss_pred cchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 281 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+.+.+.+..+|+..+++.+.++++..+...++.||++
T Consensus 134 ----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 134 ----------IGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred ----------HHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 7778888889999998888887777666655667653
No 106
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.45 E-value=4.1e-12 Score=121.60 Aligned_cols=153 Identities=13% Similarity=0.050 Sum_probs=103.6
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcch
Q psy17630 93 VEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPL 171 (372)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~ 171 (372)
.+.++++..+...+..+.... ..+...++.|.++++ .|++..+.++...+..++.+++.++.|++.||+|||+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~ 323 (485)
T TIGR00711 249 LRLFKYRNFTIGCVYMSLLGL-----GLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKL 323 (485)
T ss_pred HHHHcCCChHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH
Confidence 356777644443322222222 234556677888776 48899999999999999999999999999999999999
Q ss_pred hhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHH
Q psy17630 172 LLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGS 251 (372)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 251 (372)
+..+..+.+++...+... ... +...+.......+.+.+.+....+.. ....+..|++.|+++.++.+....
T Consensus 324 ~~~g~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~ 394 (485)
T TIGR00711 324 VTIGLILYAVGFYWRAFT--FTP------DTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGSSLSNFTRQ 394 (485)
T ss_pred HHHHHHHHHHHHHHHhcc--CCC------CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHHHHHHHHHH
Confidence 888877776666554311 001 11122333334444444444333444 445677899999999999999999
Q ss_pred HHHHHHHH
Q psy17630 252 LIEFVVVK 259 (372)
Q Consensus 252 ~~~~~~~~ 259 (372)
+++.+++.
T Consensus 395 ~g~~ig~~ 402 (485)
T TIGR00711 395 LGGSIGTA 402 (485)
T ss_pred HHHHHHHH
Confidence 99999988
No 107
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.45 E-value=1.3e-12 Score=123.79 Aligned_cols=159 Identities=14% Similarity=0.132 Sum_probs=117.9
Q ss_pred HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
.....+.|.+.+++|.+..+.++..+...++..++.++.|+++||+|||++++.+.++..++.+++++..
T Consensus 36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---------- 105 (455)
T TIGR00892 36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS---------- 105 (455)
T ss_pred cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh----------
Confidence 3456678888889999999999999998888899999999999999999999998888877776654431
Q ss_pred ccccHHHHHHH-HHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 201 DGLGLLPVASL-AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 201 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
+.+...... .+.+.+.+....+ ...++.+.++ ++|+++.++.+....++..++|.
T Consensus 106 --~~~~l~~~~~~l~G~~~~~~~~~-~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~-------------------- 161 (455)
T TIGR00892 106 --NVIELYLTAGFITGLGLAFNFQP-SLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAP-------------------- 161 (455)
T ss_pred --hHHHHHHHHHHHHHhcchhhhhH-HHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHH--------------------
Confidence 112222222 2333333332223 3356678886 78999999999999999998888
Q ss_pred hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheecc
Q psy17630 280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP 324 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 324 (372)
+.+.+.+..|||++|++.+++.++..+..++..+
T Consensus 162 -----------l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 162 -----------LNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred -----------HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888888899999999988877766554443333
No 108
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.45 E-value=2e-13 Score=125.82 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=120.0
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
.+......|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.+...+..
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~--------- 89 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD--------- 89 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHH---------
Confidence 34556778888899999999999999999999999999999999999999999999988888887665541
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
+.+..+....+.+.+.+..+.... ..+.|.+| ++|+++.++......++..+++.
T Consensus 90 ---~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~-------------------- 144 (377)
T TIGR00890 90 ---SLAALYLTYGLASAGVGIAYGIAL-NTAVKWFP-DKRGLASGIIIGGYGLGSFILSP-------------------- 144 (377)
T ss_pred ---HHHHHHHHHHHHhHHHHHHHHhHH-HHHHHHcC-cccHHHHHHHHHhcchhHhHHHH--------------------
Confidence 123334444444444433332222 45567776 57999999988887787777666
Q ss_pred hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccC
Q psy17630 280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE 325 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e 325 (372)
+...+.+..+|++.|.+.++++++..+..+++.++
T Consensus 145 -----------~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 179 (377)
T TIGR00890 145 -----------LITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGY 179 (377)
T ss_pred -----------HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence 55666677899999998888877776665555544
No 109
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.44 E-value=1.5e-11 Score=114.10 Aligned_cols=151 Identities=10% Similarity=-0.043 Sum_probs=108.7
Q ss_pred HHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccc
Q psy17630 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (372)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
....+.|.+.++.|.+..+.+.......++.+++.++.|++.||+|||+.+..+..+..++.+.....
T Consensus 218 ~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~------------ 285 (381)
T PRK03633 218 SLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQ------------ 285 (381)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhh------------
Confidence 34456788888888888888888888889999999999999999999998887777666654433100
Q ss_pred cccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhc
Q psy17630 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILG 281 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (372)
........+.+.+.. ...|....++.|..|++.++...+..+....+++.++|.
T Consensus 286 ---~~~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~---------------------- 339 (381)
T PRK03633 286 ---AAMAPALFILGAAGF-TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPS---------------------- 339 (381)
T ss_pred ---HHHHHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 111112222222222 223444466788888888777777777788899999999
Q ss_pred chhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhh
Q psy17630 282 SLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFV 319 (372)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 319 (372)
+.+.+.+..+++..|.+.+.+.++..+..
T Consensus 340 ---------~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 340 ---------FTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred ---------HHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 89999999999888888777776665443
No 110
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.44 E-value=1.7e-12 Score=124.72 Aligned_cols=162 Identities=12% Similarity=0.014 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH
Q psy17630 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG 184 (372)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 184 (372)
.+..+.+..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 100 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTL 100 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 33333334333344455666777888888999999999999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccc
Q psy17630 185 ALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHR 264 (372)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (372)
.+.+.. +.+..++...+.+.+.+... +....++.|.+|++.|+.++++......++..+++.
T Consensus 101 ~~~~~~------------~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~----- 162 (496)
T PRK03893 101 ACGFAP------------GYWTLFIARLVIGMGMAGEY-GSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQ----- 162 (496)
T ss_pred HHHHHh------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 665431 12334444444444434333 333477899999999999999999999999999998
Q ss_pred cCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHH
Q psy17630 265 FTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV 310 (372)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 310 (372)
+.+.+.+..+|++.|.+.+.
T Consensus 163 --------------------------~~~~l~~~~~w~~~f~~~~~ 182 (496)
T PRK03893 163 --------------------------VYSLVVPVWGWRALFFIGIL 182 (496)
T ss_pred --------------------------HHHHHhccCCHHHHHHHHHH
Confidence 77778888899988765433
No 111
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.44 E-value=4.9e-12 Score=117.04 Aligned_cols=200 Identities=16% Similarity=0.121 Sum_probs=110.6
Q ss_pred echhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHH
Q psy17630 4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE 77 (372)
Q Consensus 4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 77 (372)
+|..+++.++.. ||+.|++. +++.++..++..+++||+++- ++. ++.+.
T Consensus 126 ~g~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~------------~~~~~------ 180 (377)
T PRK11102 126 IAPLLAPIIGGWLLVWFSWHAIFWVL---ALAAILAAALVFFFIPETLPK----ERR------------QPFHL------ 180 (377)
T ss_pred HHHHHHHHHHHHHHHHcChHHHHHHH---HHHHHHHHHHHHHhCCccCcc----ccc------------CCCCh------
Confidence 344455444433 99999988 677766566666778886420 000 00000
Q ss_pred HHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHH
Q psy17630 78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMT 156 (372)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 156 (372)
++...++++.++++..+...+. ......+.+....+.|.+..+ .|++..+.+.......++.+++.
T Consensus 181 --------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~ 247 (377)
T PRK11102 181 --------RTTIRNFASLFRHKRVLGYMLA-----SGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMT 247 (377)
T ss_pred --------HHHHHHHHHHHcChHHHHHHHH-----HHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 0011234556666533322211 111122233444455555444 58888899999999999999999
Q ss_pred HHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCc
Q psy17630 157 FFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP 236 (372)
Q Consensus 157 ~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 236 (372)
++.|++.||+|||+.+..+..+..+..+......... . ..+...........+.+.... ....+..|..|
T Consensus 248 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 317 (377)
T PRK11102 248 IINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD-L-------GFWALVVGVAAFVGCVSMISS-NAMAVILDEFP- 317 (377)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh-h-------hHHHHHHHHHHHHHHHHHhhH-HHHHHHhcccc-
Confidence 9999999999999998887766544433322211100 0 112222222222222222222 22245567766
Q ss_pred chhhhHHHHHHHHHH
Q psy17630 237 DVKGLALGVICILGS 251 (372)
Q Consensus 237 ~~r~~~~~~~~~~~~ 251 (372)
+.|+++.++.+....
T Consensus 318 ~~~g~~~~~~~~~~~ 332 (377)
T PRK11102 318 HMAGTASSLAGTLRF 332 (377)
T ss_pred ccchHHHHHHHHHHH
Confidence 788998888776544
No 112
>PRK11043 putative transporter; Provisional
Probab=99.43 E-value=4.1e-12 Score=118.63 Aligned_cols=156 Identities=12% Similarity=0.031 Sum_probs=115.2
Q ss_pred HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
+......|.+.++.|.+..+.++..+...++..++.+++|+++||+|||+.+..+..+..++.+.....
T Consensus 23 ~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------- 91 (401)
T PRK11043 23 DMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV----------- 91 (401)
T ss_pred HHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-----------
Confidence 444445556677889999999999999999999999999999999999999998888777766655433
Q ss_pred ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL 280 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (372)
.+.+..++...+.+.+.+.. .+....++.|.+|++.++...+..+....++..++|.
T Consensus 92 -~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------------------- 148 (401)
T PRK11043 92 -ESAAQLLVLRFVQAVGVCSA-AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPL--------------------- 148 (401)
T ss_pred -cCHHHHHHHHHHHHhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 11233333333433332222 2222356789999988888888888888888888888
Q ss_pred cchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630 281 GSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 320 (372)
+.+.+.+..+|+..+++.+++.++..+..+
T Consensus 149 ----------i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 149 ----------LGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred ----------HHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 778888888999988888777776665544
No 113
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.43 E-value=3.8e-12 Score=119.88 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=114.4
Q ss_pred hHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHhhHHHHHHHHHHHHHHHHhhccc
Q psy17630 120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICIGALGYYFYLLKLDE 197 (372)
Q Consensus 120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (372)
++.+..++|.++.+ +|++..+.+...........++.+++|+++||+ |||++++++.++..++.+++... ..
T Consensus 25 ~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~----~~-- 98 (493)
T PRK15462 25 FYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS----EI-- 98 (493)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh----hc--
Confidence 56677778877655 599999999999999999999999999999999 99999999998888877654321 00
Q ss_pred cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcc--hhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchh
Q psy17630 198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD--VKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALG 275 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (372)
..........+...+.+... +...++++|.+|++ .|.++.++.+...++|+.++|.
T Consensus 99 -----~~~~~~l~l~li~iG~G~~~-~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~---------------- 156 (493)
T PRK15462 99 -----HPSFLYLSLAIIVCGYGLFK-SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI---------------- 156 (493)
T ss_pred -----chhHHHHHHHHHHHhccccc-ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH----------------
Confidence 01112222223323333322 33347889999976 6899999999999999999999
Q ss_pred hhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHh
Q psy17630 276 VICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTF 317 (372)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 317 (372)
+.+.+.+..||+..|.+.++..+++.+
T Consensus 157 ---------------l~g~L~~~~Gw~~~F~iaaigm~l~li 183 (493)
T PRK15462 157 ---------------ACGYAQEEYSWAMGFGLAAVGMIAGLV 183 (493)
T ss_pred ---------------HHHHHHhhhChHHHHHHHHHHHHHHHH
Confidence 888888889999988876554444433
No 114
>PRK11043 putative transporter; Provisional
Probab=99.43 E-value=1.6e-11 Score=114.60 Aligned_cols=155 Identities=10% Similarity=-0.013 Sum_probs=93.5
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRP 170 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~ 170 (372)
++++.+++++.+...+...... ........+.|.+.++.|++..+.++......++..++.++.+++.||+|+|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~ 269 (401)
T PRK11043 195 TFKQLLKSKTYLGNVLIFAACS-----AAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQ 269 (401)
T ss_pred HHHHHHcChhHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 4566677764443332221111 11234455677788888888888888888888888999999999999999998
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHH
Q psy17630 171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG 250 (372)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 250 (372)
......+..+++.+.+......... ..+..+....+.+.+.+..+. .......|..| +.|+++.++.+..+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~ 340 (401)
T PRK11043 270 LLPWLLVLFAVSVIAIWLASLLSHP-------SLVPLLIPFCVMAAANGAIYP-IVVAQALRPFP-QATGKAAALQNTLQ 340 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-------cHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhCc-ccChHHHHHHHHHH
Confidence 7766555555444333222111111 122222333333333333332 22244456666 57999999999888
Q ss_pred HHHHHHHHH
Q psy17630 251 SLIEFVVVK 259 (372)
Q Consensus 251 ~~~~~~~~~ 259 (372)
..++..++.
T Consensus 341 ~~~~~~~~~ 349 (401)
T PRK11043 341 LGLCFLASL 349 (401)
T ss_pred HHHHHHHHH
Confidence 888887777
No 115
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.41 E-value=1.1e-11 Score=118.82 Aligned_cols=187 Identities=13% Similarity=0.030 Sum_probs=112.6
Q ss_pred HHHHHHhhchHHHHHhhHHHHHhcCCCCCC-hhhH-----HHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH
Q psy17630 111 LLCFLSFSGINVVIFYLKRILIATNSKIIS-PNYG-----QNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG 184 (372)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~-----~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 184 (372)
+..+........+.+..|.+.++++.+..+ ..+. .+...++..++.++.|+++||+|||+++.+++++.+++.+
T Consensus 23 ~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~ 102 (490)
T PRK10642 23 LGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTF 102 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 333334444455566677666666433322 1221 3455678889999999999999999999999999999988
Q ss_pred HHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccc
Q psy17630 185 ALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHR 264 (372)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (372)
++++...+..-+ .......++...+.+.+.+..+. ....+++|.+|+++|+...++......+|..+++..
T Consensus 103 ~~a~~~~~~~~g----~~a~~~l~~~R~l~G~g~g~~~~-~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~---- 173 (490)
T PRK10642 103 CIGLIPSYATIG----IWAPILLLLCKMAQGFSVGGEYT-GASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGV---- 173 (490)
T ss_pred HHHhcccHHHHH----HHHHHHHHHHHHHHHhHhHhhHH-HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH----
Confidence 877652111000 00001234445555555444433 444889999999999999888776666666555540
Q ss_pred cCCcccccchhhhhhhcchhhhhhh-hhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 265 FTPDVKGLALGVICILGSLIEFVVV-KTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
...+. .+........|||+.|++.+.++++.. +....+||+.
T Consensus 174 --------------------~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~-~~~~~~~esp 216 (490)
T PRK10642 174 --------------------VVLISTIVGEANFLDWGWRIPFFIALPLGIIGL-YLRHALEETP 216 (490)
T ss_pred --------------------HHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHH-HHHHcCCCCh
Confidence 00000 011122346799999988665555433 3344677763
No 116
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.41 E-value=6.4e-12 Score=116.94 Aligned_cols=132 Identities=13% Similarity=0.070 Sum_probs=83.0
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (372)
||+.|++. +++.++..++..+++||+++. + + ++ +. ...+..++.
T Consensus 156 ~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~---~-~-~~-----------~~-----------------~~~~~~~~~ 199 (392)
T PRK10473 156 WQSLFYTM---AAMGILVLLLSLFILKETRPA---R-A-PA-----------AS-----------------SKPRENSES 199 (392)
T ss_pred hHHHHHHH---HHHHHHHHHHHHHHcCCCCCc---c-c-CC-----------cc-----------------chHHHHHHH
Confidence 99999998 777777666667778887421 0 0 00 00 000112345
Q ss_pred HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 174 (372)
++++..+...+........ ......+.|.+. ++.|++..+.+.......++.+++.++.+++.||+|||+.+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~ 274 (392)
T PRK10473 200 LLNRFFLSRLVITTLSVTV-----ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLT 274 (392)
T ss_pred HhCHHHHHHHHHHHHHHHH-----HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5555444333322221111 122334455544 4558888888888888999999999999999999999999988
Q ss_pred hhHHHHHHHHHHHH
Q psy17630 175 SDICMAICIGALGY 188 (372)
Q Consensus 175 ~~~~~~~~~~~~~~ 188 (372)
+..+..++.+.+..
T Consensus 275 ~~~~~~~~~~~~~~ 288 (392)
T PRK10473 275 SQVLFLAAGITLAL 288 (392)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777766665543
No 117
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.41 E-value=1.3e-12 Score=124.35 Aligned_cols=163 Identities=13% Similarity=0.050 Sum_probs=115.4
Q ss_pred HHHhhHHHHHhcCCC--------CCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhh
Q psy17630 123 VIFYLKRILIATNSK--------IISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLK 194 (372)
Q Consensus 123 ~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (372)
.....+....+.+++ ..+.++..+...++..++.++.|+++||+|||++++.+.++..++.++..... .
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---~ 123 (481)
T TIGR00879 47 IGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA---F 123 (481)
T ss_pred hhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---c
Confidence 344445555555544 78889999999999999999999999999999999999888887777664431 0
Q ss_pred ccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccch
Q psy17630 195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLAL 274 (372)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (372)
....+..++...+.+.+.+... +....++.|.+|+++|+++.++.+....+|..+++.
T Consensus 124 ------~~~~~~~~~~r~l~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~--------------- 181 (481)
T TIGR00879 124 ------ALSVEMLIVGRVLLGIGVGIAS-ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYG--------------- 181 (481)
T ss_pred ------ccchHHHHHHHHHHHhhhhHHH-hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHH---------------
Confidence 0112244555555555544433 344578899999999999999999999999988887
Q ss_pred hhhhhhcchhhhhhhhhh---HHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 275 GVICILGSLIEFVVVKTF---DDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+. ....+..+||+.|++.+...++..+ ..+++||+.
T Consensus 182 ----------------~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~l~~~~ 220 (481)
T TIGR00879 182 ----------------FGSGKVSLNNTLGWRIPLGLQLIPAGLLFL-GLFFLPESP 220 (481)
T ss_pred ----------------HHHHhhcCCCCccHHHHHHHHHHHHHHHHH-HHhcCCCCh
Confidence 44 3333557899888885555544443 344677763
No 118
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.40 E-value=7.1e-12 Score=116.91 Aligned_cols=161 Identities=14% Similarity=0.138 Sum_probs=120.0
Q ss_pred HHHHHhhHHH-HHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 121 NVVIFYLKRI-LIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 121 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
+....+.+.+ .++.|.+..+.++......+...+..++.|+++||+|||+++..+.++..++.+.+...
T Consensus 27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~---------- 96 (400)
T PRK11646 27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA---------- 96 (400)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh----------
Confidence 4445555554 46679999999999999999999999999999999999999999998888877766443
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
++.+.......+.+.+.+. ..+...+++.|.+|+++|++++++.+....++..++|.
T Consensus 97 --~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~-------------------- 153 (400)
T PRK11646 97 --HEPWLLWLSCILSGLGGTL-FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGAL-------------------- 153 (400)
T ss_pred --ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 1133444444444444332 23333477899999999999999999999999999998
Q ss_pred hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630 280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET 326 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 326 (372)
+.+.+. ..+|++.|++.+.++++..++..++.||.
T Consensus 154 -----------l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 154 -----------LGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred -----------HHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 777776 67899888887777666655544455653
No 119
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.40 E-value=3.3e-11 Score=113.70 Aligned_cols=174 Identities=17% Similarity=0.149 Sum_probs=122.3
Q ss_pred hchHHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc--chhhHhhHHHHHHHHHHHHHHHHhh
Q psy17630 118 SGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR--PLLLISDICMAICIGALGYYFYLLK 194 (372)
Q Consensus 118 ~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (372)
.+.+.+......+.. .+|++..+.........+.+++|++++|++.||+|.| ++++++.++..+..+.-.+-....
T Consensus 295 dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~- 373 (477)
T PF11700_consen 295 DGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPS- 373 (477)
T ss_pred HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhc-
Confidence 345566666666655 5699999999999999999999999999999999999 777776665543333221100010
Q ss_pred ccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccch
Q psy17630 195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLAL 274 (372)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (372)
.. ...+.+.+.+...+.+...+ +..+..-++.+|+.|+++.+..+|+....+...+.++|.
T Consensus 374 ~~---g~~~~~~f~~~a~~~G~~~G-~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPl--------------- 434 (477)
T PF11700_consen 374 FF---GLKSPWEFWVLAVLIGLFMG-GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPL--------------- 434 (477)
T ss_pred cc---CcccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH---------------
Confidence 00 01223444444444444444 334455688899999999999999999999999999999
Q ss_pred hhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 275 GVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
+++.+.+..| .|..+....++.+++.++.+ .++..|+
T Consensus 435 ----------------l~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~-~v~~~~g 472 (477)
T PF11700_consen 435 ----------------LFGLITDATGSQRYGFLFLLVLFLIGLILLF-FVDVEKG 472 (477)
T ss_pred ----------------HHHHHHHHhCCchhHHHHHHHHHHHHHHHHh-hccchhh
Confidence 8888888887 66777777777777776654 5555444
No 120
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.39 E-value=8.7e-12 Score=116.34 Aligned_cols=161 Identities=9% Similarity=-0.187 Sum_probs=112.7
Q ss_pred hHHHHHhhHHH-HHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630 120 INVVIFYLKRI-LIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (372)
Q Consensus 120 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
.......+|.+ .+++|.+..+.++..+...++..+++++.|+++||+|||+++..+.++.+++.+.+..........
T Consensus 31 ~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 108 (399)
T PRK05122 31 IGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWP-- 108 (399)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccc--
Confidence 45556667765 456799999999999999999999999999999999999999999888777665544332111100
Q ss_pred ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC 278 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (372)
....+..++...+.+.+.+... +....++.|.+|+++|+++.++......++..+++.
T Consensus 109 --~~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~------------------- 166 (399)
T PRK05122 109 --VLSLLLLLLGRLLLGIGESLAG-TGSILWGIGRVGALHTGRVISWNGIATYGALAIGAP------------------- 166 (399)
T ss_pred --hhHHHHHHHHHHHHHhhHHhhc-chHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHH-------------------
Confidence 0011233344444444444332 333366789999999999999888777777778887
Q ss_pred hhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHH
Q psy17630 279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT 316 (372)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 316 (372)
+.+.+.+..||+..+++.++++++..
T Consensus 167 ------------l~~~l~~~~g~~~~~~~~~~~~~~~~ 192 (399)
T PRK05122 167 ------------LGVLLYHWGGLAGLGLLIMLLALLGL 192 (399)
T ss_pred ------------HHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 77777788899877766555544433
No 121
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.39 E-value=1e-11 Score=118.36 Aligned_cols=164 Identities=12% Similarity=0.085 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHhhHHHH
Q psy17630 103 KATIVIVGLLCFLSFSGINVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMA 180 (372)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~ 180 (372)
+.....+........ +++....+++.++ +++|++..+..+..........+..+++|+++|| +|||++++.+.++..
T Consensus 14 ~~~~~~~~~~~~er~-~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~ 92 (489)
T PRK10207 14 RPFFMIFFVELWERF-GYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA 92 (489)
T ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence 334444444433333 3555555555554 4579888888888888888888888999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcch--hhhHHHHHHHHHHHHHHHHH
Q psy17630 181 ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV--KGLALGVICILGSLIEFVVV 258 (372)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~ 258 (372)
++.+.+++.. . ......+...+.+.+.+.... ...+++.|.+|+++ |+.+.++.+...++|..++|
T Consensus 93 ~g~~~~~~~~----~-------~~~ll~~~~~l~~ig~g~~~~-~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~ 160 (489)
T PRK10207 93 IGYFMTGMSL----L-------KPDLIFIALGTIAVGNGLFKA-NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISL 160 (489)
T ss_pred HHHHHHHHhc----c-------chhHHHHHHHHHHhccccccC-CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHH
Confidence 9888776541 0 011222334444444443333 33478899998874 47789999999999999999
Q ss_pred HhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHH
Q psy17630 259 KTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAV 310 (372)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 310 (372)
. +.+.+.+..||++.|++.++
T Consensus 161 ~-------------------------------l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 161 S-------------------------------LAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred H-------------------------------HHHHHHHhhChHHHHHHHHH
Confidence 8 88888888999998877544
No 122
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.38 E-value=2.4e-11 Score=113.29 Aligned_cols=147 Identities=15% Similarity=-0.001 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHhhchHHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHH
Q psy17630 104 ATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAIC 182 (372)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~ 182 (372)
+.+....+.+...+..........+.+.+ ++|++..|.+++.++..+...++.+..|++.||+|.|+++.++.++..+.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34444444444444434445555555555 68999999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 183 IGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.+..++..... .++.+..++...+.+++ +..+. .....+++.+|+++||+++|+....+++|..+.+.
T Consensus 114 ~~~~~~a~~~~-------~~s~~~lli~r~l~Gig-g~~f~-~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~ 181 (462)
T PRK15034 114 CVWLGIAVQNP-------NTPFGIFIVIALLCGFA-GANFA-SSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQL 181 (462)
T ss_pred HHHHHHHHccc-------CCCHHHHHHHHHHHHHH-HHhHH-HHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence 77655421000 01233444445555444 33333 34467899999999999999987666666665554
No 123
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.38 E-value=1.4e-11 Score=116.09 Aligned_cols=186 Identities=13% Similarity=0.037 Sum_probs=109.4
Q ss_pred HHHHhhchHHHHHhhHHHHHhcC---CCCCCh---hhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHH
Q psy17630 113 CFLSFSGINVVIFYLKRILIATN---SKIISP---NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGAL 186 (372)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~ 186 (372)
..........+.+..|.+.++++ .+..+. ........++..+++++.|+++||+|||+++..+.++.+++.+.+
T Consensus 31 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~ 110 (432)
T PRK10406 31 NLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVI 110 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 33444445566677777777764 233322 233444556666999999999999999999999999998888877
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccC
Q psy17630 187 GYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFT 266 (372)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (372)
++........ .......++...+.+.+.+..+ +...++++|.+|+++|+...++.......|..+++..
T Consensus 111 ~~~~~~~~~~----~~~~~~l~~~R~l~G~g~g~~~-~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~------ 179 (432)
T PRK10406 111 ACLPGYETIG----TWAPALLLLARLFQGLSVGGEY-GTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV------ 179 (432)
T ss_pred hhcCCchhHH----HHHHHHHHHHHHHHHhhhhhhH-hhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH------
Confidence 6541110000 0001234444555554444333 4445899999999999998887766555555554430
Q ss_pred CcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 267 PDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+..+... .........|||.+|.+.++.+++... .....||++
T Consensus 180 --------------~~~~~~~---~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~ 222 (432)
T PRK10406 180 --------------VVVLQQT---LEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETS 222 (432)
T ss_pred --------------HHHHHHh---CCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCc
Confidence 0000000 001112357999999877766655433 233456653
No 124
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.37 E-value=9.6e-12 Score=118.36 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=117.9
Q ss_pred chHHHHHhhHHHHHh---cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHhhHHHHHHHHHHHHHHHHhh
Q psy17630 119 GINVVIFYLKRILIA---TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLK 194 (372)
Q Consensus 119 ~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (372)
+++....++|.++.+ +|++..+.+.......++..++.+++|+++|| +|||+++.++.++.+++.++++...
T Consensus 25 ~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~---- 100 (475)
T TIGR00924 25 SYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI---- 100 (475)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc----
Confidence 456677778887765 68899999999999999999999999999999 8999999999998888877665430
Q ss_pred ccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcch---hhhHHHHHHHHHHHHHHHHHHhhccccCCcccc
Q psy17630 195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV---KGLALGVICILGSLIEFVVVKTVRHRFTPDVKG 271 (372)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (372)
+.+...+...+.+.+.+.. .+...++++|.+|++. |+++.++.+...++|+.++|.
T Consensus 101 --------~~~~~~~~~~l~g~g~g~~-~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~------------ 159 (475)
T TIGR00924 101 --------YPDLIFYGLGTIAVGSGLF-KANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPL------------ 159 (475)
T ss_pred --------cHhHHHHHHHHHHhccccc-cCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHH------------
Confidence 1223333344444443332 3344477889998754 888999999999999999999
Q ss_pred cchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHh
Q psy17630 272 LALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTF 317 (372)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 317 (372)
+.+.+.+..+|+..|.+.++..+++.+
T Consensus 160 -------------------l~g~l~~~~g~~~~f~~~~~~~~~~~l 186 (475)
T TIGR00924 160 -------------------LAGVIAENYGYHVGFNLAAVGMVIGLL 186 (475)
T ss_pred -------------------HHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 888888888999888877755554443
No 125
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.37 E-value=4.1e-11 Score=107.58 Aligned_cols=142 Identities=10% Similarity=-0.019 Sum_probs=97.3
Q ss_pred HHHHHhhHHHHHh---cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccc
Q psy17630 121 NVVIFYLKRILIA---TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDE 197 (372)
Q Consensus 121 ~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (372)
.....|.+.++++ .|++..+.+...+....+.++|.++.+++.||+|+|+.+.++..+..++.++.... .
T Consensus 157 ~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~----~--- 229 (310)
T TIGR01272 157 VSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT----H--- 229 (310)
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc----C---
Confidence 3456677777764 38888999999999999999999999999999999998877776666655333221 0
Q ss_pred cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhh
Q psy17630 198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVI 277 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (372)
.........+.+.+.+..+. ...+...+.+|++ .+++.++. ..+.+|+++.|.
T Consensus 230 ------~~~~~~~~~l~g~~~s~i~P-~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~------------------ 282 (310)
T TIGR01272 230 ------GYVAMWFVLALGLFNSIMFP-TIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPL------------------ 282 (310)
T ss_pred ------CHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHH------------------
Confidence 11122333344444444444 3335666667654 45566664 567788899998
Q ss_pred hhhcchhhhhhhhhhHHHHHhcccchhhHHHH
Q psy17630 278 CILGSLIEFVVVKTFDDVERAFGTGVAFGTFA 309 (372)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 309 (372)
+.+.+.+..|.+.++++..
T Consensus 283 -------------l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 283 -------------LQGSLADCLGIQLAFALPV 301 (310)
T ss_pred -------------HHHHHHHhccchHHHHHHH
Confidence 8898989888877776433
No 126
>PRK12382 putative transporter; Provisional
Probab=99.37 E-value=1e-11 Score=115.55 Aligned_cols=156 Identities=12% Similarity=-0.136 Sum_probs=107.1
Q ss_pred hHHHHHhhHHH-HHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630 120 INVVIFYLKRI-LIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (372)
Q Consensus 120 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
.......+|.+ .+++|.+..+.++..+...+...+++++.|+++||+|||+.++.+.+...++.+............
T Consensus 31 ~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 108 (392)
T PRK12382 31 VGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSA-- 108 (392)
T ss_pred HHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccch--
Confidence 34445566654 467799999999999999999999999999999999999999988777666544322211100000
Q ss_pred ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC 278 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (372)
..+.+..++...+.+.+.+... +....++.|.+|+++|++++++.......+..++|.
T Consensus 109 --~~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~------------------- 166 (392)
T PRK12382 109 --PFKFALLVVGRLILGFGESQLL-TGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAP------------------- 166 (392)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHH-------------------
Confidence 0112334444445544444322 233356789999999999999988888888888887
Q ss_pred hhcchhhhhhhhhhHHHHHhcccchhhHHHHHH
Q psy17630 279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY 311 (372)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 311 (372)
+.+.+.+..||+..+.+....
T Consensus 167 ------------~~~~l~~~~g~~~~~~~~~~~ 187 (392)
T PRK12382 167 ------------LGLLLHSHFGFAALALTTMVL 187 (392)
T ss_pred ------------HHHHHHhccChHHHHHHHHHH
Confidence 777777778887655544433
No 127
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.37 E-value=1.2e-11 Score=112.83 Aligned_cols=156 Identities=15% Similarity=0.120 Sum_probs=121.9
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
........|.+.++.|.+..+.++......++..++.++.|+++||+|||+.+..+.++..++.+..... +
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~---- 85 (352)
T cd06174 15 RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-----S---- 85 (352)
T ss_pred hhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-----c----
Confidence 4556677788888889899999999999999999999999999999999999999988888887776543 1
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
+.+.......+.+.+.+... +....++.|.+|+++|++.+++.+....++..+++.
T Consensus 86 ---~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------------- 141 (352)
T cd06174 86 ---SLWLLLVGRFLLGLGGGALY-PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPL-------------------- 141 (352)
T ss_pred ---cHHHHHHHHHHHHccccccc-HhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHH--------------------
Confidence 12344444444444444333 344478899999999999999999999999999998
Q ss_pred hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhh
Q psy17630 280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFV 319 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 319 (372)
+.+.+.+..+|+..+.+.+.+.++..+..
T Consensus 142 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (352)
T cd06174 142 -----------LGGLLAESLGWRWLFLILAILGLLLALLL 170 (352)
T ss_pred -----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888877776666555443
No 128
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.36 E-value=1.1e-11 Score=113.69 Aligned_cols=130 Identities=10% Similarity=0.056 Sum_probs=82.7
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHH-HHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVG-FIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
......+.|.+.++.|++..+.+......+ +..+++.+++|++.||+|||+.+..+.++.++...+........... .
T Consensus 225 ~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~ 303 (356)
T TIGR00901 225 DSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHD-G 303 (356)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc-c
Confidence 345566777777778888888877776555 57789999999999999999998888777766555433221000000 0
Q ss_pred ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHH
Q psy17630 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGS 251 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 251 (372)
......+.......+..++.+.... ...+++.|.+|++.||+.+++.+...+
T Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 304 ITFPHLLMLFLTITLEAVTGGLGTV-AFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 0001123333333333344333333 444888999999999999999876543
No 129
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.36 E-value=4.8e-11 Score=111.33 Aligned_cols=123 Identities=9% Similarity=0.049 Sum_probs=78.3
Q ss_pred HHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHh-hcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccccc
Q psy17630 124 IFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD-KAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG 202 (372)
Q Consensus 124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (372)
..+.|.+.++.+.++.+.+.......+....+....+++.| |++.++.+..+.++.+++.+++... +
T Consensus 228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-----~------- 295 (400)
T PRK11646 228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-----S------- 295 (400)
T ss_pred HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-----h-------
Confidence 45677777776556677777777766666655555555554 5666666666666666555444332 0
Q ss_pred ccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+.+.......+.+.+.+... +...+++.|..|++.|++++++.+....++..++|.
T Consensus 296 ~~~~~~~~~~l~~~g~~~~~-p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~ 351 (400)
T PRK11646 296 NLQQLFTLICLFYIGSIIAE-PARETLSASLADARARGSYMGFSRLGLALGGAIGYI 351 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHH-ccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhccc
Confidence 11222222333333333222 333377789999999999999999999999999998
No 130
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.35 E-value=1.6e-11 Score=114.72 Aligned_cols=130 Identities=13% Similarity=-0.020 Sum_probs=90.9
Q ss_pred HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
.....+.+.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.+.+... ....
T Consensus 30 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-~~~~------ 102 (402)
T TIGR00897 30 GLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVF-GLGH------ 102 (402)
T ss_pred hhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH-hccC------
Confidence 344556677778889999999999999999999999999999999999999999888887776543211 0000
Q ss_pred ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHH-HHHHH
Q psy17630 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE-FVVVK 259 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~-~~~~~ 259 (372)
.+.+..+....+.+.+.+.. .+....++.|.+|+++|++++|+.+....++. .++|.
T Consensus 103 -~~~~~l~~~~~i~G~g~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~ 160 (402)
T TIGR00897 103 -ANYPLILLFYGIRGLGYPLF-AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSY 160 (402)
T ss_pred -ccHHHHHHHHHHHHcchHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333333333333222 22222556788999999999999998888775 45665
No 131
>PRK10054 putative transporter; Provisional
Probab=99.35 E-value=1.4e-11 Score=114.67 Aligned_cols=142 Identities=13% Similarity=0.093 Sum_probs=93.3
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHH
Q psy17630 135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIY 214 (372)
Q Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (372)
+.+....+.......+.........|++.||.++|+.+..++.+..++...+... .+ +.+.........
T Consensus 240 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~ 308 (395)
T PRK10054 240 DFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS----GN-------SLLLWGMSAAVF 308 (395)
T ss_pred chHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc----ch-------HHHHHHHHHHHH
Confidence 4444455566666666666777888999999999999888877776665544322 00 122222333333
Q ss_pred HHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHH
Q psy17630 215 IIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDD 294 (372)
Q Consensus 215 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (372)
+.+.. ...+....++.+..|++.|++..+..+ ...+|..++|. ..+.
T Consensus 309 ~~g~~-~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~-------------------------------~~G~ 355 (395)
T PRK10054 309 TVGEI-IYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPL-------------------------------VSGV 355 (395)
T ss_pred HHHHH-HHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHH-------------------------------HHHH
Confidence 33322 223344467788899999999888654 56688999999 8999
Q ss_pred HHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630 295 VERAFGTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 295 ~~~~~g~~~~~~~~~~~~~~~~~~~~ 320 (372)
+.+..|....|++.+.+..+..++..
T Consensus 356 l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 356 ILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 99999887777776665555554443
No 132
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.35 E-value=3.2e-12 Score=116.80 Aligned_cols=212 Identities=18% Similarity=0.247 Sum_probs=126.4
Q ss_pred echhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHH
Q psy17630 4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE 77 (372)
Q Consensus 4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 77 (372)
+|..+++.++.. ||+.|++. +++.++..++..++++++|+....+.+.++ +
T Consensus 132 ~g~~~g~~l~~~l~~~~~~~~~~~~~---~~~~~~~~il~~~~~~~~~~~~~~~~~~~~-----------------~--- 188 (352)
T PF07690_consen 132 LGSILGPLLGGFLISYFGWRWAFLIS---AILSLIAAILFILFLPEPPPPRERESPKES-----------------E--- 188 (352)
T ss_dssp HHHHHHHHHHHHCCCHCHHCCHHHHH---HHHHHHHHHHHHCCC---STTTT--SSTTT-----------------T---
T ss_pred hhhhcccchhhhhhhccccccccccc---cchhhhhhhhHhhhhhhccccccccccccc-----------------c---
Confidence 455555555554 99999999 777777655555666655431111000000 0
Q ss_pred HHHHHHHhhhhhh-hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHH-HHhcCCC-CCChhhHHHHHHHHHHH
Q psy17630 78 LQKELDIQAQKKK-SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRI-LIATNSK-IISPNYGQNIVGFIQVI 154 (372)
Q Consensus 78 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~ 154 (372)
++++++.. .++.+++++..| ..+....... ........+.|.+ .+..|.+ ..+.+....+..+..++
T Consensus 189 -----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (352)
T PF07690_consen 189 -----SKKPKPLKPGFKSLFKNPVLW-ILLIAFFLFF----FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGII 258 (352)
T ss_dssp -------HHHCCCH-CTHHHHHHCCH-HHHHHHHHHH----HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHH
T ss_pred -----cccccccccccccccccchhh-hhhhhhhHHH----HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 00011111 245555555343 2222222221 1234467777776 5566878 67778888889999999
Q ss_pred HHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCC
Q psy17630 155 MTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF 234 (372)
Q Consensus 155 ~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 234 (372)
+.++.|+++||+++|+..........+..+.+...... . +....+....+.+.+.+.. .+....++.|..
T Consensus 259 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~ 328 (352)
T PF07690_consen 259 GSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS--S-------SPVWLIIALFLIGFGFGIV-FPILFSLIQELV 328 (352)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH--C-------HHHHHHHHHHHHHHHHHHH-CHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh--h-------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC
Confidence 99999999999999888777766666555544332111 0 1223333444444444433 344448889999
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHH
Q psy17630 235 TPDVKGLALGVICILGSLIEFVVV 258 (372)
Q Consensus 235 p~~~r~~~~~~~~~~~~~~~~~~~ 258 (372)
|++.|+++.++.+....+++.++|
T Consensus 329 ~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 329 PPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999998876
No 133
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.34 E-value=1.8e-11 Score=113.89 Aligned_cols=150 Identities=11% Similarity=-0.044 Sum_probs=115.9
Q ss_pred HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
.......|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.+..++.
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a----------- 94 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY----------- 94 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC-----------
Confidence 345677888999999999999999999999999999999999999999999999999999999887665
Q ss_pred ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL 280 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (372)
++.+..++...+.+++.+...... ..++.|.+| ++|+.++++.......+..+++.
T Consensus 95 -~~~~~ll~~r~l~Gig~~~~~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~--------------------- 150 (393)
T PRK09705 95 -PQSALLLSSALLGGVGIGIIQAVM-PSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAA--------------------- 150 (393)
T ss_pred -cchHHHHHHHHHHHhHHHHHhhhh-hHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHH---------------------
Confidence 123344555555555555433333 366788887 77999999988888788888887
Q ss_pred cchhhhhhhhhhHHHHHhc-ccchhhHHHHHHHHHH
Q psy17630 281 GSLIEFVVVKTFDDVERAF-GTGVAFGTFAVYCIIG 315 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~ 315 (372)
+.+.+.++. +||..+.+++...++.
T Consensus 151 ----------~~~~l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 151 ----------ITPWLVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 666666664 7888776655554433
No 134
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.34 E-value=3.6e-11 Score=107.67 Aligned_cols=163 Identities=15% Similarity=0.059 Sum_probs=125.4
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
........+.+-+++|+|+.|.+++.+...+.+.+..+..|.+.||+|-|++..+++++..+-++..++....
T Consensus 30 W~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~------- 102 (417)
T COG2223 30 WTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTY------- 102 (417)
T ss_pred HHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccC-------
Confidence 3445555566667889999999999999999999999999999999999999999999988888877665211
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
.+.+..+++..+.+ .+.+...+...++++.||++++|+++|+.. .+++|..+...
T Consensus 103 --~~~~~ll~~gll~G--~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~-------------------- 157 (417)
T COG2223 103 --PSTWQLLVIGLLLG--LAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQL-------------------- 157 (417)
T ss_pred --CchHHHHHHHHHHh--cccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHH--------------------
Confidence 11233333333332 223333344478899999999999999988 99999998888
Q ss_pred hcchhhhhhhhhhHHHHHhcc---cchhhHHHHHHHHHHHhhhheeccC
Q psy17630 280 LGSLIEFVVVKTFDDVERAFG---TGVAFGTFAVYCIIGTFFVYFVVPE 325 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~e 325 (372)
+.+.+....+ |+....++....++..+..++...+
T Consensus 158 -----------~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 158 -----------VAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred -----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888888888 8888888888877777777766543
No 135
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.34 E-value=2.2e-11 Score=113.77 Aligned_cols=130 Identities=8% Similarity=-0.115 Sum_probs=99.5
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
........|.+.+++|.+..+.++..+...++..++++..|++.||+|||+++..+..+.+++.+++..... .
T Consensus 19 ~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~--~----- 91 (410)
T TIGR00885 19 NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE--I----- 91 (410)
T ss_pred HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh--h-----
Confidence 345557778888888999999999999999999999999999999999999999999998888766433210 0
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.+.+..+....+.+.+.+....... .++.+..|+++|++..++.+....+|..++|.
T Consensus 92 --~~~~~~l~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~ 148 (410)
T TIGR00885 92 --MNYTLFLVGLFILTAGLGFLETAAN-PYILVMGPESTATRRLNLAQSFNPFGSIIGMV 148 (410)
T ss_pred --ccHHHHHHHHHHHHhhHHHHHhhhh-HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123344445555555554444333 66778889999999999998888888888887
No 136
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.33 E-value=8.3e-12 Score=118.96 Aligned_cols=153 Identities=14% Similarity=0.105 Sum_probs=108.8
Q ss_pred HHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccc
Q psy17630 124 IFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGL 203 (372)
Q Consensus 124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (372)
...++.+..+.| +..+..++.....+...++.++.|+++|.+|||..++.+.++..++.++.+.+ ++
T Consensus 64 a~~l~~I~~diG-~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA------------~~ 130 (599)
T PF06609_consen 64 ASILPYINADIG-GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA------------QN 130 (599)
T ss_pred HHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC------------Cc
Confidence 444567778888 45677788888999999999999999999999999999999999999887655 22
Q ss_pred cHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcch
Q psy17630 204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSL 283 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (372)
....+....+.+.+.+ ...+....++|+.|.+.|..+.++...........++.
T Consensus 131 ~~~~iag~~l~GvgaG--~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~------------------------ 184 (599)
T PF06609_consen 131 MNTFIAGMVLYGVGAG--VQELAALAISELVPNKWRGLGLAIASIPFIITTWISPL------------------------ 184 (599)
T ss_pred HHHHHHHHHHHHHhhH--HHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHH------------------------
Confidence 3344555555555433 22233355799999999988776655443333333444
Q ss_pred hhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhhee
Q psy17630 284 IEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFV 322 (372)
Q Consensus 284 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
....+....+|||.|++..++..++++..+++
T Consensus 185 -------ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~f 216 (599)
T PF06609_consen 185 -------IAQLFAAHSGWRWIFYIFIIWSGIALVLIFFF 216 (599)
T ss_pred -------HHHHhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 44445556789999988888777766654444
No 137
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.33 E-value=9.1e-12 Score=113.55 Aligned_cols=187 Identities=13% Similarity=0.145 Sum_probs=131.4
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh----cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA----TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA 166 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 166 (372)
+..+++|+|++|...+........ ++.+-...+.+... .+.+....+.+.+...+..++...+..++.+|+
T Consensus 212 ~~~~l~k~~~fw~~~l~v~g~~~~-----Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri 286 (412)
T PF01306_consen 212 DVLSLFKMRNFWFFVLFVIGVAAI-----YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI 286 (412)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466788887666555444444333 33333333444433 334455678889999999999999999999999
Q ss_pred CCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHH
Q psy17630 167 GRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVI 246 (372)
Q Consensus 167 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 246 (372)
|.|+.++++..++.+=.+.+++. ++++.+...-.+.+.-+.....+.. -|+.+.+|++..++...+.
T Consensus 287 g~k~~Lllag~i~~iRi~~~~~~------------~~~~~i~~~klLH~~e~~l~lva~f-kYI~~~fd~rlsAt~y~v~ 353 (412)
T PF01306_consen 287 GAKNLLLLAGVIMAIRIIGSGFA------------TNPWVISLIKLLHALEFPLLLVAAF-KYITAHFDKRLSATLYLVG 353 (412)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHT--------------SHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHS-GGGHHHHHHHH
T ss_pred ChHhHHHHHHHHHHHHHHHHhhh------------cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHhHHHHHHHHH
Confidence 99999999988888887776655 2345555555566555554444343 6889999999988988885
Q ss_pred -HHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccC
Q psy17630 247 -CILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE 325 (372)
Q Consensus 247 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e 325 (372)
+...+++..+.+. ..+.+.++.|.+.+|++.+.+.+...++..+.+++
T Consensus 354 ~~~~~~~~~~i~s~-------------------------------~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 354 FQFAKQIGIIILSP-------------------------------LAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HTTTHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHhh-------------------------------hHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 4667788888888 99999999999889999998888777777666654
Q ss_pred C
Q psy17630 326 T 326 (372)
Q Consensus 326 ~ 326 (372)
.
T Consensus 403 ~ 403 (412)
T PF01306_consen 403 D 403 (412)
T ss_dssp S
T ss_pred C
Confidence 3
No 138
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.33 E-value=4.1e-11 Score=126.61 Aligned_cols=124 Identities=8% Similarity=-0.061 Sum_probs=88.3
Q ss_pred HHHhhHHHHH-hcCCCCC-ChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 123 VIFYLKRILI-ATNSKII-SPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 123 ~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
...+.|.+.. ..|.+.. ..+++.+...++.+++.+++|+++||+++++.+.++.++.+++.+++....
T Consensus 251 ~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~---------- 320 (1146)
T PRK08633 251 AQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP---------- 320 (1146)
T ss_pred HHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh----------
Confidence 3445555554 4588887 888999999999999999999999999999888877777766665544331
Q ss_pred ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+.+..++...+++++.+....+ ..+++.+..|++.||+++++.+.+..++.++++.
T Consensus 321 --~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~ 376 (1146)
T PRK08633 321 --SLASVLVLFFLFGFSAGLFIVP-LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLA 376 (1146)
T ss_pred --hHHHHHHHHHHHHHHHHHhhHH-HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHH
Confidence 1233334444444444433333 3477889999999999999999888887766554
No 139
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.33 E-value=2.5e-10 Score=106.21 Aligned_cols=122 Identities=13% Similarity=0.026 Sum_probs=80.5
Q ss_pred HHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccccc
Q psy17630 124 IFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG 202 (372)
Q Consensus 124 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (372)
.+..+.+.++ +|.++.+.+.......++.++++++.+++.||.++|+.+..+.. .++..+.+... +
T Consensus 225 ~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~-----~------- 291 (393)
T PRK11195 225 RFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ-----H------- 291 (393)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH-----h-------
Confidence 3344444443 58889999999999999999999999999999999987777643 23322222111 0
Q ss_pred ccHHHHHHHHHHHHhhcccccccceeeeccCCCcch-hhhHHHHHHHHHHHHHHHHHH
Q psy17630 203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV-KGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+.+.......+.+.+.+....+.. +.+.|..|++. +|++.++.+...+++..++..
T Consensus 292 ~~~~~~~~~~~~G~~~g~~~~~~~-~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~ 348 (393)
T PRK11195 292 SLLPAYPLLILIGALGGFFVVPMN-ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLG 348 (393)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHH-HHHHhhCcccccchhHHHHHhHHHHHHHHHHHH
Confidence 123233333344444444334444 55677766654 799999999999988888776
No 140
>TIGR00898 2A0119 cation transport protein.
Probab=99.32 E-value=5.7e-12 Score=121.32 Aligned_cols=154 Identities=13% Similarity=0.051 Sum_probs=113.6
Q ss_pred hhHHHHHhcCCC---CCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccccc
Q psy17630 126 YLKRILIATNSK---IISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG 202 (372)
Q Consensus 126 ~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (372)
+.+.+.++++.+ ..+.++..+...++.+++.++.|+++||+|||++++++.++..++.++.++. .
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~------------~ 178 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS------------P 178 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc------------c
Confidence 456666777877 7788999999999999999999999999999999999988888877766543 1
Q ss_pred ccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcc
Q psy17630 203 LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGS 282 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (372)
+.+..++...+.+++.+ +..+....++.|.+|++.|+.+.++......+|..+++.
T Consensus 179 ~~~~~~~~r~l~G~~~~-~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~----------------------- 234 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIG-GIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPL----------------------- 234 (505)
T ss_pred cHHHHHHHHHHHHhhcc-chHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 23344444444444433 334455588999999999999999887777777777665
Q ss_pred hhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 283 LIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 283 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+...+. +||+.+++.++..++..+.. +++||+.
T Consensus 235 --------~~~~~~---~wr~~~~~~~i~~~~~~~~~-~~~~esp 267 (505)
T TIGR00898 235 --------VAYFIP---DWRWLQLAVSLPTFLFFLLS-WFVPESP 267 (505)
T ss_pred --------HHHHhh---HHHHHHHHHHHHHHHHHHHH-HhcCCCh
Confidence 433332 28888888887777666554 4778863
No 141
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.31 E-value=9.8e-11 Score=107.47 Aligned_cols=126 Identities=13% Similarity=0.088 Sum_probs=84.9
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
+.....+.|.+.++.|.+..+.+...+...++.+++.++.|++.||+ +||+.+..+.++.+++.+.+... ..
T Consensus 213 ~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~---~~---- 285 (355)
T TIGR00896 213 YYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA---PM---- 285 (355)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh---hh----
Confidence 34556678888888898988999999999999999999999999999 56666666666666665544332 10
Q ss_pred ccccccHHHHHHHHHHHHhhcccccccceeeecc-CCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGE-LFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.... ....+.+.+.+... +.....+.+ ..+++.++...++.+..+.+++.++|.
T Consensus 286 -----~~~~-~~~~l~g~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~ 340 (355)
T TIGR00896 286 -----HGLW-AWALVLGLGQGGAF-PLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPL 340 (355)
T ss_pred -----hHHH-HHHHHHHHhhhhHh-HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 12233333333222 222233343 344567788899988888899999998
No 142
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.31 E-value=4.8e-11 Score=113.79 Aligned_cols=127 Identities=13% Similarity=0.022 Sum_probs=75.9
Q ss_pred HhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccccccc
Q psy17630 125 FYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLG 204 (372)
Q Consensus 125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (372)
.+.+++.+....+....+.......+..+++.++.++++||+|||+.+.++..+..++.+........... ..
T Consensus 252 ~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 324 (473)
T PRK10429 252 GFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPH-------NA 324 (473)
T ss_pred hheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCch-------hH
Confidence 34444444332233444556666678889999999999999999999988877666555443221111111 12
Q ss_pred HHHHHHHHHHHHhhcccccccceeeeccCCC-----cchh--hhHHHHHHHHHHHHHHHHHH
Q psy17630 205 LLPVASLAIYIIVFSVGFGPIPGVMMGELFT-----PDVK--GLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-----~~~r--~~~~~~~~~~~~~~~~~~~~ 259 (372)
+..++...+.+.+.+... ...+++++|..+ +.+| |...+.......++..+++.
T Consensus 325 ~~~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~ 385 (473)
T PRK10429 325 LLIVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAF 385 (473)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHH
Confidence 333333333434433333 444577888854 3333 66778888888888888776
No 143
>PRK15075 citrate-proton symporter; Provisional
Probab=99.30 E-value=9.2e-11 Score=110.70 Aligned_cols=150 Identities=16% Similarity=0.089 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHH-HHH-----HHHHHHHHHHHHHHHhhcCCcchhhHhhHH
Q psy17630 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQ-NIV-----GFIQVIMTFFSSLLVDKAGRRPLLLISDIC 178 (372)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~-----~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 178 (372)
.....++..+........+....|.+.++++.+..+.+... +.. .+...++.++.|+++||+|||+.++.+.++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 34444455555555567788899999999987776654332 221 222346889999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHH
Q psy17630 179 MAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVV 258 (372)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 258 (372)
..++.+++++......-. .......++...+.+.+.+...... ..+++|.+|+++|++++++.....+++..+++
T Consensus 96 ~~~~~~l~~~~~~~~~~~----~~~~~~l~~~R~l~G~~~g~~~~~~-~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~ 170 (434)
T PRK15075 96 MASGTLLIAFVPGYATIG----LAAPLLVLLGRLLQGFSAGVELGGV-SVYLAEIATPGRKGFYTSWQSASQQVAVVFAA 170 (434)
T ss_pred HHHHHHHHHhCCcHHHHH----HHHHHHHHHHHHHhhccccccHHHH-HHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence 888888776541100000 0000122334444444444333333 37889999999999999998877776666555
Q ss_pred H
Q psy17630 259 K 259 (372)
Q Consensus 259 ~ 259 (372)
.
T Consensus 171 ~ 171 (434)
T PRK15075 171 L 171 (434)
T ss_pred H
Confidence 4
No 144
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.30 E-value=1.9e-10 Score=106.49 Aligned_cols=188 Identities=14% Similarity=0.081 Sum_probs=126.7
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcC-CCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATN-SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr 169 (372)
+..+++|+|+...-++..+.... .......|.+.++++.| .+....+...++..+.+++.....+++..|+|-|
T Consensus 199 ~~~~llk~~~~~~Fll~~~l~~~-----~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~ 273 (400)
T PF03825_consen 199 DALKLLKNPRFLVFLLAAFLIGI-----SHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK 273 (400)
T ss_pred HHHHHhcCccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 34678888754433222222222 24455667778888887 6777778888888899999999999999999999
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHH----HHHHHhhcccccccceeeeccCCCcchhhhHHHH
Q psy17630 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASL----AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGV 245 (372)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 245 (372)
++++++.+..++=..+++.. .+ +.+...... .+.+..++..+.... .|+.+..|++.|++++++
T Consensus 274 ~ll~~a~~~~~vR~~l~a~~----~~-------~~~~~~~~~~l~q~lhG~tf~~~~~a~~-~yi~~~~p~~~~at~Q~l 341 (400)
T PF03825_consen 274 WLLLLALVAYAVRWLLYAYF----SD-------PWPFIVALQLLGQLLHGLTFGLFHAASV-RYIDRIAPPELRATAQGL 341 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHh----cC-------CcHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHhCCccchHHHHHH
Confidence 99999988888776665433 00 112222222 235555554444444 788999999999999999
Q ss_pred HHHH-HHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccch------hhHHHHHHHHHHHhh
Q psy17630 246 ICIL-GSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGV------AFGTFAVYCIIGTFF 318 (372)
Q Consensus 246 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~ 318 (372)
.+.. .++|+.++.. +.+.+.+..|.+. .+.+.+++.++..++
T Consensus 342 ~~~~~~Glg~~iG~~-------------------------------igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~ 390 (400)
T PF03825_consen 342 YSALSFGLGGAIGSL-------------------------------IGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL 390 (400)
T ss_pred HHHHHhhHHHHHHHH-------------------------------HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 8765 5678888888 8888888876553 344455555555555
Q ss_pred hheeccCC
Q psy17630 319 VYFVVPET 326 (372)
Q Consensus 319 ~~~~~~e~ 326 (372)
.+++.||+
T Consensus 391 f~~~fk~~ 398 (400)
T PF03825_consen 391 FVILFKPK 398 (400)
T ss_pred HHhhccCC
Confidence 55555554
No 145
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.30 E-value=6.1e-11 Score=110.38 Aligned_cols=120 Identities=11% Similarity=0.011 Sum_probs=92.7
Q ss_pred HHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccc
Q psy17630 124 IFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGL 203 (372)
Q Consensus 124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (372)
....+...++.+.+..+.++......+...+..+++|+++||+|||++++.+.++.+++.+.+....
T Consensus 23 ~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~------------- 89 (393)
T PRK11195 23 LFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI------------- 89 (393)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH-------------
Confidence 3444555677787888889999999999999999999999999999999999988877766543320
Q ss_pred cHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
. . +....+.+.+.+ ...|...+++.|++|+++|++++++......++..++|.
T Consensus 90 ~-~-~~~r~l~G~~~a-~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~ 142 (393)
T PRK11195 90 H-P-LLAYGLVGIGAA-AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTV 142 (393)
T ss_pred H-H-HHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1 233333443333 344565688999999999999999999998888899988
No 146
>PRK09952 shikimate transporter; Provisional
Probab=99.30 E-value=9.9e-11 Score=110.56 Aligned_cols=149 Identities=9% Similarity=-0.025 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhhchHHHHHhhHHHHH-hc--CCCCCChhhHH-----HHHHHHHHHHHHHHHHHHhhcCCcchhhHhh
Q psy17630 105 TIVIVGLLCFLSFSGINVVIFYLKRILI-AT--NSKIISPNYGQ-----NIVGFIQVIMTFFSSLLVDKAGRRPLLLISD 176 (372)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--g~~~~~~~~~~-----~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 176 (372)
.+....+.............+..|.+.. ++ +.++. .+... ....++..+++++.|+++||+|||+.+..+.
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~ 101 (438)
T PRK09952 23 AALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTV 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHH
Confidence 3333333444444334444555554433 33 44444 33332 2344556788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHH
Q psy17630 177 ICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFV 256 (372)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~ 256 (372)
++.+++.+++++........ .......+....+.+.+.+..+... ..++.|.+|+++|+...+.......+|..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~R~l~G~~~g~~~~~~-~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l 176 (438)
T PRK09952 102 WMMGIATALIGLLPSFSTIG----WWAPVLLVTLRAIQGFAVGGEWGGA-ALLAVESAPKNKKAFYSSGVQVGYGVGLLL 176 (438)
T ss_pred HHHHHHHHHHhcCCcHHHHH----HHHHHHHHHHHHHHHhhhcccHHHH-HHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 99998888776651111000 0000123444455555554443333 478899999999999888877777776666
Q ss_pred HHH
Q psy17630 257 VVK 259 (372)
Q Consensus 257 ~~~ 259 (372)
++.
T Consensus 177 ~~~ 179 (438)
T PRK09952 177 STG 179 (438)
T ss_pred HHH
Confidence 554
No 147
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.29 E-value=5.3e-11 Score=109.91 Aligned_cols=164 Identities=13% Similarity=0.006 Sum_probs=110.0
Q ss_pred hHHHHHhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH-hhHHHHHHHHHHHHHHHHhhccc
Q psy17630 120 INVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI-SDICMAICIGALGYYFYLLKLDE 197 (372)
Q Consensus 120 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 197 (372)
........|.++ ++.|.+..+.++..+...+...+..++.|+++||+|||+.++. +..+..++.+.....
T Consensus 13 ~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-------- 84 (375)
T TIGR00899 13 GALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN-------- 84 (375)
T ss_pred HHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc--------
Confidence 344455566554 5679999999999999999999999999999999999887654 444444444443322
Q ss_pred cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhH--HHHHHHHHHHHHHHHHHhhccccCCcccccchh
Q psy17630 198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLA--LGVICILGSLIEFVVVKTVRHRFTPDVKGLALG 275 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (372)
++.+..++...+.+... ....+....+..|..|++.|+.+ .+.......++..++|.
T Consensus 85 ----~~~~~l~~~~~~~g~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~---------------- 143 (375)
T TIGR00899 85 ----RNYFLLLVLGVLLSSFA-STANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPP---------------- 143 (375)
T ss_pred ----chHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhh----------------
Confidence 11222233333332222 22334444566777777766644 56666677788888887
Q ss_pred hhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 276 VICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+.+.+.+..+|+..|++.+.+.++..+..++++||.+
T Consensus 144 ---------------~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 144 ---------------LAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred ---------------HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 7777888889999999888877777766665677653
No 148
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.29 E-value=1.1e-10 Score=111.84 Aligned_cols=153 Identities=12% Similarity=0.035 Sum_probs=106.5
Q ss_pred hHHHHHhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHhhHHHHHHHHHHHHHHHHhhccc
Q psy17630 120 INVVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLKLDE 197 (372)
Q Consensus 120 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (372)
++....+++.++ +++|++..+................+++|+++|| +|||++++.+.++.+++.+++.+.. .
T Consensus 37 ~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~----~-- 110 (500)
T PRK09584 37 YYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG----H-- 110 (500)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc----c--
Confidence 455666677666 5679888887777766665555666789999999 5999999999888888776654430 0
Q ss_pred cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcch--hhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchh
Q psy17630 198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV--KGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALG 275 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (372)
..+...+...+.+.+.+... +...+++.|.+|++. |..+.++.+...++|+.++|.
T Consensus 111 -----~~~~l~~~~~l~gig~g~~~-~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~---------------- 168 (500)
T PRK09584 111 -----DAGIVYMGMATIAVGNGLFK-ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSML---------------- 168 (500)
T ss_pred -----cHHHHHHHHHHHHHhhhccc-CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHH----------------
Confidence 11222333334444444333 343477899998643 455788888999999999998
Q ss_pred hhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHH
Q psy17630 276 VICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIG 315 (372)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 315 (372)
+.+.+.+..||++.|.+.++...++
T Consensus 169 ---------------i~g~l~~~~g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 169 ---------------ATPWLAAKYGWSVAFALSVVGMLIT 193 (500)
T ss_pred ---------------HHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 8888888899999988766544443
No 149
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.29 E-value=1.3e-11 Score=96.74 Aligned_cols=137 Identities=18% Similarity=0.240 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhccccccc
Q psy17630 146 NIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPI 225 (372)
Q Consensus 146 ~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (372)
....++..++.++.|++.||+|||+.+..+..+..++.+..... . +.+.......+.+.+.+.. .+.
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~-------~~~~~~~~~~~~g~~~~~~-~~~ 71 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-----S-------NITVLIIARFLQGFGAAFA-LVA 71 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-----c-------cHHHHHHHHHHHHHHHHHH-HHh
Confidence 44567788999999999999999999988887777766654332 1 1233334444444443332 334
Q ss_pred ceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhh
Q psy17630 226 PGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAF 305 (372)
Q Consensus 226 ~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 305 (372)
...++.|.+|++.|++..++.+....++..+++. ..+.+.+..+|+..+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------------------------~~~~~~~~~~~~~~~ 120 (141)
T TIGR00880 72 GAALIADIYPPEERGVALGLMSAGIALGPLLGPP-------------------------------LGGVLAQFLGWRAPF 120 (141)
T ss_pred HHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHH-------------------------------hHHHHhcccchHHHH
Confidence 4477899999999999999999999999999998 777777888888888
Q ss_pred HHHHHHHHHHHhhhheeccCC
Q psy17630 306 GTFAVYCIIGTFFVYFVVPET 326 (372)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~e~ 326 (372)
.+.+.+..+..+..+++.||+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 121 LFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHHHHHHHHHHHHhhcCCCC
Confidence 888887777777666555653
No 150
>PRK09848 glucuronide transporter; Provisional
Probab=99.28 E-value=8e-11 Score=111.61 Aligned_cols=153 Identities=12% Similarity=-0.035 Sum_probs=90.7
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr 169 (372)
+++++++|+.++...+..++.... ........|++.++. |.+.....+......++.+++.++.+++.||+|+|
T Consensus 220 ~~~~l~~n~~f~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~ 294 (448)
T PRK09848 220 SLQTLKRNRPLFMLCIGALCVLIS-----TFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK 294 (448)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHH-----HHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 466788887544333332222221 233334455555443 54443333434444566788899999999999999
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcc-------hhhhH
Q psy17630 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD-------VKGLA 242 (372)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~ 242 (372)
+.+.++.++..++.+.+.+. .. .+.+.......+.+.+.+... +..+++.+|..|.+ .+|..
T Consensus 295 ~~~~~g~~~~~i~~~~~~~~---~~-------~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~ 363 (448)
T PRK09848 295 NTFLIGALLGTCGYLLFFWV---SV-------WSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLT 363 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHc---Cc-------hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHH
Confidence 99999888777766554321 10 112333333334444444333 34446777777643 35888
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17630 243 LGVICILGSLIEFVVVK 259 (372)
Q Consensus 243 ~~~~~~~~~~~~~~~~~ 259 (372)
.++.+....++..+++.
T Consensus 364 ~~~~~~~~klg~aig~~ 380 (448)
T PRK09848 364 YSLFSFTRKCGQAIGGS 380 (448)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999888888888776
No 151
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.28 E-value=1.4e-10 Score=106.81 Aligned_cols=141 Identities=12% Similarity=-0.019 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHH
Q psy17630 103 KATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIIS-PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181 (372)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~ 181 (372)
+..++.|...++..+ -....+..|.+.++.|++..+ .+.+......+..++.++.|+++||+|-|+++.++.+...+
T Consensus 27 ~~~~~lC~fGF~~e~--R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl 104 (511)
T TIGR00806 27 VLVLYLCFYGFMAQF--RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVC 104 (511)
T ss_pred HHHHHHHHHHHHHHh--hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 344444444444443 235566777888889999999 99999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 182 CIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
..+++++.. +...+.+...+++.+-+..+ ..+.++...+|+++|+++.++......+|.++++.
T Consensus 105 ~t~L~~fa~------------Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~ 168 (511)
T TIGR00806 105 VWLLLLLGT------------SVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSV 168 (511)
T ss_pred HHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888876651 23445566666666666555 44488899999999999999999999999999998
No 152
>PTZ00207 hypothetical protein; Provisional
Probab=99.28 E-value=1.4e-10 Score=111.29 Aligned_cols=164 Identities=9% Similarity=-0.006 Sum_probs=110.5
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
.+.+..+.+.+.+++|++..+.++....... ...+.++.|++.||+|||+++.++.++..++.+++++......
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i----- 116 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI----- 116 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc-----
Confidence 4566778888888899999888887766433 3356667899999999999999999999999888766421100
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
..+.+.+.+...+.+.+.+....... ..+.+.|| +.||++.|+......+|+++.+.
T Consensus 117 -~~s~~~l~l~r~l~G~G~~~~~~~~~-~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~-------------------- 173 (591)
T PTZ00207 117 -EGSVVRLSVYNGLMTLGCMLFDLGAV-VTVLSVFP-SNRGAVVAIMKTFTGLGSAILGS-------------------- 173 (591)
T ss_pred -cCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 01233334444444444332222233 55678887 78999999999999999987665
Q ss_pred hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheecc
Q psy17630 280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP 324 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 324 (372)
+...+.. .+|+..+++.+++.++..++.+.+++
T Consensus 174 -----------l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 174 -----------IQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred -----------HHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhhee
Confidence 3333333 34666777777777766665555544
No 153
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.26 E-value=8.4e-10 Score=103.40 Aligned_cols=207 Identities=12% Similarity=0.079 Sum_probs=108.3
Q ss_pred chhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHH
Q psy17630 5 GILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDEL 78 (372)
Q Consensus 5 G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 78 (372)
|..+++.++.. ||+.|++. +++.++..+..++.+||+++. +++ +.+.
T Consensus 152 ~~~~g~~lg~~l~~~~gw~~~f~~~---~~~~~i~~~~~~~~lp~~~~~---~~~--------------~~~~------- 204 (413)
T PRK15403 152 APIIGPLSGAALMHFVHWKVLFAII---AVMGLIAFVGLLLAMPETVKR---GAV--------------PFSA------- 204 (413)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHH---HHHHHHHHHHHHHhCCCCccc---cCC--------------CCCh-------
Confidence 44555555543 99999999 777776555556678987530 000 0000
Q ss_pred HHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHH
Q psy17630 79 QKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTF 157 (372)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 157 (372)
+...++++++++|+..+...+...+ ..........+.|.++++. |++..+.++.......+..+++.
T Consensus 205 -------~~~~~~~~~ll~~~~~~~~~l~~~~-----~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~ 272 (413)
T PRK15403 205 -------KSVLRDFRNVFRNRLFLTGAATLSL-----SYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANA 272 (413)
T ss_pred -------HHHHHHHHHHHcCHHHHHHHHHHHH-----HHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0011245677777644432222211 1222345556778777765 88888888888888888888888
Q ss_pred HHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcc
Q psy17630 158 FSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD 237 (372)
Q Consensus 158 ~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 237 (372)
+.+++.++..+++.......+..++.+++........ + ..+..+....+++.+.+....... .. +..-...
T Consensus 273 l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~-~------~~~~~~~~~~l~~~G~~~~~p~~~-~~-al~~~~~ 343 (413)
T PRK15403 273 IVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWP-H------VWLWSVLGTSLYAFGIGLIFPTLF-RF-TLFSNNL 343 (413)
T ss_pred HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHcc-c------cHHHHHHHHHHHHHHHHHHhHHHH-HH-HhccCCC
Confidence 8887765544444433332333333332222111111 1 111223344444444443332222 11 1111122
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q psy17630 238 VKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 238 ~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.+|++.++.+.....+...++.
T Consensus 344 ~~G~a~a~~~~~~~~~~~~~~~ 365 (413)
T PRK15403 344 PKGTVSASLNMVILMVMAVSVE 365 (413)
T ss_pred CCcHHHHHHHHHHHHHHHHHHH
Confidence 3688888888877777777666
No 154
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.25 E-value=1.1e-10 Score=114.51 Aligned_cols=154 Identities=12% Similarity=-0.018 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH
Q psy17630 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG 184 (372)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 184 (372)
+++.+.+..+.+...........+.+.++++++..+.+++.+...++..++.++.+++.||+|||+.+.+++++.+++.+
T Consensus 34 ~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l 113 (633)
T TIGR00805 34 FSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF 113 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence 33344434444433334555666777888899999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcccc--------------------c----------------cc--c-ccHHHHHHHHHHHHhhccccccc
Q psy17630 185 ALGYYFYLLKLDEK--------------------L----------------VD--G-LGLLPVASLAIYIIVFSVGFGPI 225 (372)
Q Consensus 185 ~~~~~~~~~~~~~~--------------------~----------------~~--~-~~~~~~~~~~~~~~~~~~~~~~~ 225 (372)
++++..+....... . .. . ....+++..++.+++.+. ..+.
T Consensus 114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~-~~~~ 192 (633)
T TIGR00805 114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATP-IFPL 192 (633)
T ss_pred HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCc-chhc
Confidence 87665322110000 0 00 0 112333444444444333 3345
Q ss_pred ceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 226 PGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 226 ~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
..+++.|.+|++.|+...++.+....+|..+++.
T Consensus 193 ~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~l 226 (633)
T TIGR00805 193 GISYIDDFAKSKNSPLYIGILESIAVFGPAFGYL 226 (633)
T ss_pred CchhhhccCCccccHHHHHHHHHHHHhhhHHHHH
Confidence 5589999999999999999999888888888776
No 155
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.25 E-value=2.8e-10 Score=106.93 Aligned_cols=164 Identities=13% Similarity=0.090 Sum_probs=98.5
Q ss_pred HHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 121 NVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 121 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
.....+.|.++++ .|++..+.++..+...+...++.++.|+++||+|||++++++..+.++..............
T Consensus 27 ~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~---- 102 (420)
T PRK09528 27 SSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLL---- 102 (420)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3456666666666 79999999999999999999999999999999999999887655544433221111000000
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCC--cchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT--PDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVI 277 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (372)
...............+....... ....++.+ .+.++..++.......++..++|.
T Consensus 103 ----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~------------------ 159 (420)
T PRK09528 103 ----QYNILLGAIVGGIYLGFGFLAGA-GAIEAYIERVSRRSGFEYGRARMWGSLGWALCAF------------------ 159 (420)
T ss_pred ----HHHHHHHHHHHHHHhhhhhccch-hhhhhHHHHHHhhccccchhhHHhhhHHHHHHHH------------------
Confidence 00001111111111121111111 11122222 234566777777778888888887
Q ss_pred hhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccC
Q psy17630 278 CILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE 325 (372)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e 325 (372)
+.+.+.+ .+|+.+|++.++++++..++.++..+|
T Consensus 160 -------------~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK09528 160 -------------IAGILFN-INPQINFWLGSGSALILLVLLFFAKPD 193 (420)
T ss_pred -------------HHHHHHh-cCchHhHHHHHHHHHHHHHHHhccccc
Confidence 7666655 488888888877777666655544444
No 156
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.25 E-value=6.1e-10 Score=103.75 Aligned_cols=191 Identities=13% Similarity=0.011 Sum_probs=107.6
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (372)
||+.|++. +++.++..++..+++||+|+. .+ ++ ++.+.++++.
T Consensus 161 ~~~~f~~~---~~~~~~~~~~~~~~~~~~~~~----~~-~~-----------------------------~~~~~~~~~~ 203 (394)
T PRK11652 161 WRACYLFL---LLLGAGVTFSMARWMPETRPA----DA-RR-----------------------------TRVLASYRTL 203 (394)
T ss_pred hHHHHHHH---HHHHHHHHHHHHHhCCccCcc----cc-ch-----------------------------hHHHHHHHHH
Confidence 99999998 666666555666678887531 00 00 0012235566
Q ss_pred HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 174 (372)
++++..+......+... .+...+..+.+.+.++ .|.+..+.++......++.+++..+.+++.||++|+...
T Consensus 204 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~-- 276 (394)
T PRK11652 204 LSNRRFNCYLLMLIGTL-----AGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ-- 276 (394)
T ss_pred HcChHHHHHHHHHHHHH-----HHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 67664443332221111 1123334445556665 688888888888888888888999999999999843322
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHH
Q psy17630 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIE 254 (372)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 254 (372)
......+..+.......... ...+.......+.+.+.+.... ....+..|.+| +.++++.++.+....+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~ 347 (394)
T PRK11652 277 SVICCLLAGLLMWIPGWFGV-------MNVWTLLVPAALFFFGAGMLFP-LATSGAMEPFP-YLAGTAGALLGGLQNIGS 347 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcc-------ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcc-ccchHHHHHHHHHHHHHH
Confidence 22222222221111100000 1123333344444444443333 33366678777 578999999998888888
Q ss_pred HHHHH
Q psy17630 255 FVVVK 259 (372)
Q Consensus 255 ~~~~~ 259 (372)
.+++.
T Consensus 348 ~~~~~ 352 (394)
T PRK11652 348 GLAAL 352 (394)
T ss_pred HHHHH
Confidence 88887
No 157
>PRK10133 L-fucose transporter; Provisional
Probab=99.24 E-value=2.7e-10 Score=107.44 Aligned_cols=130 Identities=12% Similarity=-0.042 Sum_probs=98.1
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
......+.|.+.+++|.+..+.++..+...++..+++++.|+++||+|||+++..+..+..++.+++.... ..
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~--~a----- 114 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA--EI----- 114 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH--hc-----
Confidence 45667788988888899999999999999999999999999999999999999999999988887643211 01
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
++.+..+....+.+.+.+....... .++.|..|.+.|...+++......+|..+++.
T Consensus 115 --~~~~~ll~~r~l~G~g~g~~~~~~~-~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~ 171 (438)
T PRK10133 115 --MNYTLFLVGLFIIAAGLGCLETAAN-PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVV 171 (438)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHhhHH-HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1233445555555555554444333 56678777777776788888888888888776
No 158
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.24 E-value=2.1e-10 Score=121.12 Aligned_cols=163 Identities=12% Similarity=-0.025 Sum_probs=101.2
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr 169 (372)
.++.+.+++..+...+...+..+. ...+..+.|.+.++ +|.+....+++.+...++.+++.++.|+++|+.+++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~ 291 (1140)
T PRK06814 217 LLKYAKADKRIWLAILGISWFWLV-----GAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITL 291 (1140)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence 456666766444333322222221 23445567777766 488888999999999999999999999999988877
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHhhc-cc-------cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhh
Q psy17630 170 PLLLISDICMAICIGALGYYFYLLKL-DE-------KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL 241 (372)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 241 (372)
+.+..+.++.+++.+.+.+....... .. -....+.+..++..++++++.+....+. .+++.+..|++.||+
T Consensus 292 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~~G~ 370 (1140)
T PRK06814 292 LYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPL-FAALQAWANPAHRAR 370 (1140)
T ss_pred eeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHH-HHHHHhhCCccccee
Confidence 76666555555444433221000000 00 0000123444444444544444433333 478899999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy17630 242 ALGVICILGSLIEFVVVK 259 (372)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~ 259 (372)
++|+.++...++..+++.
T Consensus 371 v~g~~~~~~~~~~~ig~~ 388 (1140)
T PRK06814 371 VIAANNVLNAAFMVAGTI 388 (1140)
T ss_pred eeHHHHHHHHHHHHHHHH
Confidence 999999998888888887
No 159
>KOG2615|consensus
Probab=99.24 E-value=3.5e-11 Score=105.92 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=83.7
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHH
Q psy17630 137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII 216 (372)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (372)
+..-.+.+.+.+++.+++.++.+|.++||+|||++++++++..++..++.+.+- ....++.....++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~-------------~F~afv~aR~l~G 132 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR-------------NFAAFVLARFLGG 132 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHhhh
Confidence 344567888899999999999999999999999999999999888877766651 2222232122323
Q ss_pred hhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.+. +.-.+..++++|+++++.|+.+++.......+|-.++|.
T Consensus 133 i~k-gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPm 174 (451)
T KOG2615|consen 133 IFK-GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPM 174 (451)
T ss_pred hcc-CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcch
Confidence 333 333444589999999999999999999999998888887
No 160
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.23 E-value=1.1e-10 Score=107.49 Aligned_cols=123 Identities=12% Similarity=0.098 Sum_probs=80.6
Q ss_pred HHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 121 NVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 121 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
.....+.|.+.++ .|++..+.+.......+..+++.+++|+++||+|||+.+..+......+..++.... ...
T Consensus 242 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~---- 315 (366)
T TIGR00886 242 LGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL--VSP---- 315 (366)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcC--CCc----
Confidence 3455666767655 488888888888888999999999999999999999887776655555444433220 000
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHH
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLI 253 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~ 253 (372)
.+.+..+..........+.+.+. .+.+.+|..| +.+|+++|+.+..+++|
T Consensus 316 --~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 316 --LSLAVFIVLFVALFFFSGAGNGS-TFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred --chHHHHHHHHHHHHHHhccccch-hhhcchhhch-hhcccHHHHHHHhccCC
Confidence 01222223333333444444443 4477788887 68999999988777654
No 161
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.23 E-value=2.3e-10 Score=106.15 Aligned_cols=129 Identities=11% Similarity=-0.057 Sum_probs=99.3
Q ss_pred hchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccc
Q psy17630 118 SGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDE 197 (372)
Q Consensus 118 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (372)
........+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+.....
T Consensus 20 ~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~-------- 91 (381)
T PRK03633 20 LAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM-------- 91 (381)
T ss_pred HhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 335567788999999999999999999999999999999999999999999999999988888877765543
Q ss_pred cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
++.+..++...+.+.+.+... +.....+.+..++++|+++++.......++..+++.
T Consensus 92 ----~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 148 (381)
T PRK03633 92 ----VGFWSWLAWRFVAGIGCAMIW-VVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQL 148 (381)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113344444445444443322 222244567788889999999999888999988887
No 162
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.23 E-value=4.8e-10 Score=107.05 Aligned_cols=153 Identities=10% Similarity=0.036 Sum_probs=114.2
Q ss_pred HHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccc
Q psy17630 123 VIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (372)
Q Consensus 123 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
....+|.+.++ +|.++...+++.+..+++.++|+++.+++.+|+++++.+..+.++.+++.+.+++.
T Consensus 237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~------------ 304 (524)
T PF05977_consen 237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS------------ 304 (524)
T ss_pred HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc------------
Confidence 34456777654 58788899999999999999999999999999999998888888777776666554
Q ss_pred cccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhc
Q psy17630 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILG 281 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (372)
.+.+.....+++.+.+......... +...+..|.+.||+.+++..+....+..++..
T Consensus 305 ~~~~~~~~~l~l~G~~~~~~~~~~~-t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsl---------------------- 361 (524)
T PF05977_consen 305 PSFWLALIALFLAGAAWIIANSSLN-TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSL---------------------- 361 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHH----------------------
Confidence 1234444444444444443333333 66788999999999999999888888888888
Q ss_pred chhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhh
Q psy17630 282 SLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFV 319 (372)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 319 (372)
+.+.+.+..|.+..+.+.++..+++.++.
T Consensus 362 ---------l~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 362 ---------LWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred ---------HHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 88888898998877766665555554443
No 163
>PRK10133 L-fucose transporter; Provisional
Probab=99.22 E-value=5e-10 Score=105.65 Aligned_cols=173 Identities=12% Similarity=-0.055 Sum_probs=106.6
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHH-HH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy17630 92 LVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRI-LI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169 (372)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr 169 (372)
.++++++|..+...+.. ++.... ......|.+.+ .+ ..|+++.+.+.......++.+++.++++++.||+|||
T Consensus 251 ~~~ll~~~~~~~~~l~~-~~~~~~----~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~ 325 (438)
T PRK10133 251 LSRLARIRHWRWAVLAQ-FCYVGA----QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH 325 (438)
T ss_pred HHHHHhCchHHHHHHHH-HHHHHH----HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 45677777544333222 222211 22233345544 34 3599999999999999999999999999999999999
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHH
Q psy17630 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL 249 (372)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 249 (372)
+++..+..+..+.+++.... . ....+..+.+.+.+.+..+. ..+....|.+|++ .+++.++...
T Consensus 326 ~~l~~~~~~~~~~~~~~~~~-----~--------~~~~~~~~~l~glg~~~i~P-~~~s~a~~~~~~~-~~~as~l~~~- 389 (438)
T PRK10133 326 KVLAAYALIAMALCLISAFA-----G--------GHVGLIALTLCSAFMSIQYP-TIFSLGIKNLGQD-TKYGSSFIVM- 389 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHc-----C--------ChHHHHHHHHHHHHHHHHHH-HHHHHHHcccchh-hccchhHHhH-
Confidence 99888866665554433221 0 11123334445555554444 3336667777653 4666666653
Q ss_pred HHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHH
Q psy17630 250 GSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGT 316 (372)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~ 316 (372)
..+++.++|. +.+.+.+..| .+..|++.....+...
T Consensus 390 ~~~g~~~~~~-------------------------------i~G~l~~~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 390 TIIGGGIVTP-------------------------------VMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred HhccchHHHH-------------------------------HHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 4466777777 7787878776 5666665444444333
No 164
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.22 E-value=1.2e-09 Score=98.21 Aligned_cols=188 Identities=14% Similarity=0.149 Sum_probs=126.3
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr 169 (372)
+++|+.+++ .+..+.+..+....|.+....+...+-. ++|++..+..+......+..++|++++|++.||+|-|
T Consensus 244 t~k~i~~~~-----~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k 318 (438)
T COG2270 244 TFKEIRGRK-----NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSK 318 (438)
T ss_pred HHHHHhccc-----chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 455555554 2222233333333456666777776666 6799999999999999999999999999999999999
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHH
Q psy17630 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL 249 (372)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 249 (372)
+++..+.++..+.++...+. .. .........+.+.+.+ +.....-.|..++.|+++-+..+|+.+..
T Consensus 319 ~vl~~~lvi~~~~~~~~~~~---~~---------~~~f~i~gll~g~s~G-~~qA~SRSy~~~lvp~~k~~~fFglyalt 385 (438)
T COG2270 319 PVLMIGLVILSIAALYLIFL---EG---------ELDFWILGLLVGTSLG-GAQASSRSYLARLVPKGKEGRFFGLYALT 385 (438)
T ss_pred eeehHHHHHHHHHHHHHHHc---cc---------cHHHHHHHHHHHHhcc-hHHHHHHHHHHHhCCCccccceeehhhhh
Confidence 99988877776655543222 10 1122222233333333 33445557889999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhccc-chhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 250 GSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGT-GVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
+...++++|. +.+.+.+..|- |..+....++..++.++ +...|+.++
T Consensus 386 gra~S~~gp~-------------------------------lv~v~t~iTg~~r~g~~~i~vll~iGl~~-L~~v~~~~~ 433 (438)
T COG2270 386 GRAASFLGPF-------------------------------LVAVITQITGSSRAGVLSIIVLLLIGLLL-LLRVKVPGR 433 (438)
T ss_pred hhHHHHHHHH-------------------------------HHHHHHHHhcchhhHHHHHHHHHHhhHhh-EEeecCCCC
Confidence 9999999999 77777766653 33444555555555544 345665533
No 165
>KOG2504|consensus
Probab=99.21 E-value=4.7e-11 Score=113.37 Aligned_cols=182 Identities=14% Similarity=0.207 Sum_probs=128.1
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCC--cc
Q psy17630 93 VEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGR--RP 170 (372)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr--r~ 170 (372)
.++++++ .++.+.+.......++.....++|.+.++.|++..+...+.++.++..+++.++.|+++|+... +.
T Consensus 292 ~~ll~~~-----~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~ 366 (509)
T KOG2504|consen 292 LSLLKDP-----KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALV 366 (509)
T ss_pred HHHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHH
Confidence 4677775 4445555555555667888889999999999999999999999999999999999999999884 34
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHH
Q psy17630 171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG 250 (372)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 250 (372)
...++.+..+++.+.+... . ..+..+....+++...+ .+.......+.|+.+.++-..+.|+...+.
T Consensus 367 ~~~~~ll~~gl~~~~~p~~-----~-------~~~~l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~ 433 (509)
T KOG2504|consen 367 LFLLTLLIAGLARLFLPFA-----T-------TYVGLIVFSILFGFCVG-SFSSLTPVILVDLVGLEKLSNAYGLLLLFQ 433 (509)
T ss_pred HHHHHHHHHHHHHHHHHHh-----c-------cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcChhhcchHHHHHHHHh
Confidence 4455555555555333332 1 12233333333333333 233344357789999999899999999999
Q ss_pred HHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHHhhhheecc
Q psy17630 251 SLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYFVVP 324 (372)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 324 (372)
.++..++|. +.+.+.+..+ |...|...+...+++....+ ..+
T Consensus 434 gi~~l~gpP-------------------------------iag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~-~~~ 476 (509)
T KOG2504|consen 434 GIGALVGPP-------------------------------IAGLLYDITGNYDHAFYFCGLCFLLSAVLLL-ILR 476 (509)
T ss_pred HHHHHcCcc-------------------------------cceeeeeccCCeeeehhhcChHHHHHHHHHH-HhH
Confidence 999999999 8888888877 66677777766666664433 444
No 166
>KOG2532|consensus
Probab=99.21 E-value=1.2e-10 Score=109.28 Aligned_cols=150 Identities=12% Similarity=0.060 Sum_probs=123.3
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHH
Q psy17630 134 TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI 213 (372)
Q Consensus 134 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (372)
++++..+.+++......+.+++.+..|++.||+|-|+++..+.++.+++.++...+... ..+..++...+
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~----------~~~~~~~~R~l 137 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI----------GFYLLLVLRFL 137 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh----------cchhhHHHHHH
Confidence 46677888999999999999999999999999999999999999999888887655221 23455666666
Q ss_pred HHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhH
Q psy17630 214 YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFD 293 (372)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (372)
.+.+.+..+..+. .+.+...|+++|++..++......++.++.-. +.+
T Consensus 138 qGl~~g~~~pa~~-~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp-------------------------------~sg 185 (466)
T KOG2532|consen 138 QGLGQGVLFPAIG-SILAKWAPPNERSTFIAILTAGSQLGTIITMP-------------------------------VSG 185 (466)
T ss_pred hHHHHhHHHhhhh-ceeeeECCHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------hHH
Confidence 6666665555444 88899999999999999999999899988887 888
Q ss_pred HHHHh-cccchhhHHHHHHHHHHHhhhheeccC
Q psy17630 294 DVERA-FGTGVAFGTFAVYCIIGTFFVYFVVPE 325 (372)
Q Consensus 294 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~e 325 (372)
.+.+. .||+..|++.++++++..++.+++..|
T Consensus 186 ~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 186 LLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred HHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888 999999999999988887766555544
No 167
>KOG0569|consensus
Probab=99.21 E-value=1e-10 Score=108.80 Aligned_cols=145 Identities=14% Similarity=0.087 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccc
Q psy17630 143 YGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGF 222 (372)
Q Consensus 143 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (372)
...++..+++++|+++.++++||+|||..+.++.++..++.+++.+...... ..+.++..++.+...+...
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~---------~e~li~GR~i~Gl~~gl~~ 134 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPS---------FEMLILGRLIVGLACGLST 134 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHHHhHHHH
Confidence 3566788999999999999999999999999998888888877766643332 3456666777766666666
Q ss_pred cccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHH-hccc
Q psy17630 223 GPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVER-AFGT 301 (372)
Q Consensus 223 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~ 301 (372)
...+ .|+.|+.|.+.||....+......+|..++..+ ..+.+.. ...|
T Consensus 135 ~~~p-myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~------------------------------~l~~ilGt~~~W 183 (485)
T KOG0569|consen 135 GLVP-MYLTEISPKNLRGALGTLLQIGVVIGILLGQVL------------------------------GLPSLLGTEDLW 183 (485)
T ss_pred HHHH-HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHH------------------------------ccHHhcCCCcch
Confidence 6555 899999999999998888777777666666430 3333432 3447
Q ss_pred chhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 302 GVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
.+.+.+..+.+++..+. ..++||+.+
T Consensus 184 ~~l~~~~~i~~~~~l~~-l~~~PESPk 209 (485)
T KOG0569|consen 184 PYLLAFPLIPALLQLAL-LPFLPESPK 209 (485)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCCCCcc
Confidence 65555555555555544 458999743
No 168
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.20 E-value=5.8e-10 Score=104.82 Aligned_cols=200 Identities=13% Similarity=0.091 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHh----hcCCcchhhHh-hHHH
Q psy17630 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD----KAGRRPLLLIS-DICM 179 (372)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~~~-~~~~ 179 (372)
++.........+++ +.....+.+.++++.|.+....+.......+..++..++.|+++| |+|||+.++.+ .+..
T Consensus 6 li~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~ 84 (477)
T TIGR01301 6 LLRVASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV 84 (477)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence 33344444444443 456667777788889999999999999999999999999999999 59999998775 4444
Q ss_pred HHHHHHHHHHHHHhhc--ccccccccc---HHHHHHHHHHHHhhcccccccceeeeccCCCcchh--hhHHHHHHHHHHH
Q psy17630 180 AICIGALGYYFYLLKL--DEKLVDGLG---LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVK--GLALGVICILGSL 252 (372)
Q Consensus 180 ~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~~~~~~~~~~ 252 (372)
.++.+++......... ......... +..+..+.+.....+....+.. ++++|+.|+++| +.+.++.+....+
T Consensus 85 ~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~r-ALiaDl~p~~~~~~~~a~~~~~~~~~l 163 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCR-AFLADLTGGDARRTRIANAYFSFFMAI 163 (477)
T ss_pred HHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccCchhHHHHHHHHHHHHHHHH
Confidence 4444444332111000 000000011 1222222233334444444554 889999998866 5788888888888
Q ss_pred HHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHH------hcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630 253 IEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVER------AFGTGVAFGTFAVYCIIGTFFVYFVVPET 326 (372)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 326 (372)
|+.+++. +|++.... +.++.... ..+.+..|.+.+++.+++.++..+..+|.
T Consensus 164 G~ilg~~--------------------~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 164 GNVLGYA--------------------AGAYSGLY--KIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred HHHHHHH--------------------HHHHHhHH--HhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 8877765 11110000 00000000 01445678888888888888888888886
Q ss_pred CC
Q psy17630 327 KN 328 (372)
Q Consensus 327 ~~ 328 (372)
..
T Consensus 222 ~~ 223 (477)
T TIGR01301 222 PL 223 (477)
T ss_pred CC
Confidence 43
No 169
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.19 E-value=4.5e-10 Score=104.62 Aligned_cols=162 Identities=12% Similarity=0.040 Sum_probs=100.1
Q ss_pred HHHHHhhHHH-HHhcCCCCCChhhHHHHHHH-HHHHHHHHHHHHHhhcCCcchhh-HhhHHHHHHHHHHHHHHHHhhccc
Q psy17630 121 NVVIFYLKRI-LIATNSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKAGRRPLLL-ISDICMAICIGALGYYFYLLKLDE 197 (372)
Q Consensus 121 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 197 (372)
.......|.+ .+++|.+..+.++..+...+ +...+.+.+++ +||+|||+.++ .+.+...+...+..+. +
T Consensus 32 ~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~-- 103 (393)
T PRK15011 32 ALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN-----R-- 103 (393)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh-----h--
Confidence 4445555554 45679899998888766555 44555555556 99999998754 4444444444333222 0
Q ss_pred cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhh--hHHHHHHHHHHHHHHHHHHhhccccCCcccccchh
Q psy17630 198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKG--LALGVICILGSLIEFVVVKTVRHRFTPDVKGLALG 275 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (372)
+.+..++.....+ +.+....+....+..|..+++.|. ...++.+....++..++|.
T Consensus 104 -----~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~---------------- 161 (393)
T PRK15011 104 -----NYFVLLFVGVFLS-SFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPP---------------- 161 (393)
T ss_pred -----HHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhH----------------
Confidence 1122222222222 222233444445556666655443 3346777778888999988
Q ss_pred hhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 276 VICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+.+.+.+..|||..|++.++++++..+..+++.||.+
T Consensus 162 ---------------i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 162 ---------------LAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred ---------------HHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 8888888899999998888887777776666677754
No 170
>PRK09669 putative symporter YagG; Provisional
Probab=99.18 E-value=4.8e-10 Score=106.13 Aligned_cols=107 Identities=11% Similarity=0.002 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhccc
Q psy17630 142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVG 221 (372)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (372)
........+..+++.+++++++||+|||+.+..+.++..+..+...+. ..+ +.+..++...+.+.+.+.
T Consensus 267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~i~g~~~~~- 335 (444)
T PRK09669 267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI---PPS-------NVWLIFALNILFNFIQNL- 335 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---Ccc-------hHHHHHHHHHHHHHHHHH-
Confidence 344455567778888999999999999999888766555433322111 111 123333333444444443
Q ss_pred ccccceeeeccCCCc-------chhhhHHHHHHHHHHHHHHHHHH
Q psy17630 222 FGPIPGVMMGELFTP-------DVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 222 ~~~~~~~~~~e~~p~-------~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
..+..+++++|..+. +..|...++.+....++..+++.
T Consensus 336 ~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~ 380 (444)
T PRK09669 336 TTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGA 380 (444)
T ss_pred HHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHH
Confidence 335666888888752 22366778888888888888876
No 171
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.18 E-value=2.5e-10 Score=104.80 Aligned_cols=163 Identities=15% Similarity=0.059 Sum_probs=107.5
Q ss_pred HHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc-----CCcchh-hHhhHHHHHHHHHHHHHHHHhhc
Q psy17630 122 VVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-----GRRPLL-LISDICMAICIGALGYYFYLLKL 195 (372)
Q Consensus 122 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~-~~~~~~~~~~~~~~~~~~~~~~~ 195 (372)
......|.+.++.|.+..+.++.... .+...+ .+++|+++||+ |||+.+ +.+.++.++....+++. ...
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~---~~~ 80 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL---VPS 80 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC---Ccc
Confidence 44566788889999999998888655 344444 88999999998 898874 55555555554444322 000
Q ss_pred cccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchh
Q psy17630 196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALG 275 (372)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (372)
...+.......+...+ .....+...+++.|.+|+++|+.+.++......+|..+++.
T Consensus 81 ------~~l~~l~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~---------------- 137 (356)
T TIGR00901 81 ------TDLPLLAGLAFLIAFF-SATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGS---------------- 137 (356)
T ss_pred ------hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHH----------------
Confidence 1112222222222222 22233444478899999999999999998888888888887
Q ss_pred hhhhhcchhhhhhhhhhHHHHHhcc--------cchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 276 VICILGSLIEFVVVKTFDDVERAFG--------TGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+...+....+ ||..|++.+++.++..+..++..||++
T Consensus 138 ---------------l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 138 ---------------LALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred ---------------HHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 5555655666 999998888777766655444456643
No 172
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.18 E-value=2.2e-09 Score=101.13 Aligned_cols=193 Identities=12% Similarity=0.120 Sum_probs=121.3
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (372)
||+...+. +++..+..++..+..+|.++ +.++ ++++.+-++.++++
T Consensus 176 ~~~~~~v~---~iv~~v~~~i~~~~~ke~~~------~~~~-------------------------~~~~~~~~~~~~~~ 221 (428)
T PF13347_consen 176 YRWMALVL---AIVGLVFFLITFFFVKERSV------EVTE-------------------------QEKKISLRDSLRSL 221 (428)
T ss_pred HHHHHHHH---HHHHHHHhhhhhheeeeccc------cccc-------------------------cccccccccchhhh
Confidence 77777777 77777766677777777211 0000 00111223456778
Q ss_pred HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q psy17630 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLI 174 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 174 (372)
++||.+++.....++ .... ........+++.++. |.+ ...+.......+..+++.+++++++||+|||+.+..
T Consensus 222 ~~nr~~~~l~~~~~~-~~~~----~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~ 295 (428)
T PF13347_consen 222 FRNRPFRILLLAFFL-QWLA----FALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII 295 (428)
T ss_pred cccchHHHHHHHHHH-HHhh----hhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence 888754433333222 2222 222233344444443 423 456677778889999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcc-------hhhhHHHHHH
Q psy17630 175 SDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD-------VKGLALGVIC 247 (372)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~~~~~ 247 (372)
+..+.+++.++..+... .+.+..++...+.+.+.+... ...+++.+|+.+.+ ..|...++.+
T Consensus 296 ~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~ 364 (428)
T PF13347_consen 296 GLLLAALGFLLLFFLGP----------GSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRREGMYFSVNS 364 (428)
T ss_pred hHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCchHHHHHhhh
Confidence 99998888777654411 124555555556666655444 56668889998743 2377888888
Q ss_pred HHHHHHHHHHHH
Q psy17630 248 ILGSLIEFVVVK 259 (372)
Q Consensus 248 ~~~~~~~~~~~~ 259 (372)
+...++..+++.
T Consensus 365 ~~~k~~~~la~~ 376 (428)
T PF13347_consen 365 FFIKIGQGLAGA 376 (428)
T ss_pred hhhHHHHHHHHH
Confidence 888888877776
No 173
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.18 E-value=4.9e-10 Score=104.66 Aligned_cols=168 Identities=16% Similarity=0.151 Sum_probs=116.5
Q ss_pred HhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc-----CCcc-hhhHhhHHHHHHHHHHHHH
Q psy17630 116 SFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-----GRRP-LLLISDICMAICIGALGYY 189 (372)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~-~~~~~~~~~~~~~~~~~~~ 189 (372)
+.........-+|.++++.|++.++.+++...... .+..+++|+++||+ |||+ .+..+.++.+++...+.+.
T Consensus 11 ~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~ 88 (402)
T PRK11902 11 SGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC 88 (402)
T ss_pred HhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence 33345667778899999999999999998776665 58889999999999 8876 6777777776666654332
Q ss_pred HHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcc
Q psy17630 190 FYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDV 269 (372)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (372)
.. ..+.+.......+.. .......+...+++.|.+|+++|+++.++......++..+++.
T Consensus 89 ---~~------~~~~~~l~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~---------- 148 (402)
T PRK11902 89 ---PP------HAALWPLAGLAVLVA-FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGG---------- 148 (402)
T ss_pred ---Cc------cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhH----------
Confidence 00 011222232323333 2233344455588899999999999999998887888888777
Q ss_pred cccchhhhhhhcchhhhhhhhhhHHHHHh-cccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 270 KGLALGVICILGSLIEFVVVKTFDDVERA-FGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+...+.+. .||+..|++.+++.++..+.. ++.||++
T Consensus 149 ---------------------l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-~~~~e~~ 185 (402)
T PRK11902 149 ---------------------LALWLADRVLGWGNTYLLMAGLMLAGALTT-LWAPEPE 185 (402)
T ss_pred ---------------------HHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCc
Confidence 66666664 499999988888776655443 3566653
No 174
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.17 E-value=1.8e-09 Score=99.71 Aligned_cols=153 Identities=18% Similarity=0.117 Sum_probs=97.8
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr 169 (372)
++..+++|++++...+..++.... .+.......++.+. .|.+.............+.+++.++..++++|+|||
T Consensus 228 ~~~~~~~Nrp~~~~l~~~l~~~~~-----~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk 302 (467)
T COG2211 228 SFLLIFKNRPLLLLLLMNLLLFIA-----FNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK 302 (467)
T ss_pred HHHHHHccchHHHHHHHHHHHHHH-----HHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH
Confidence 455677887555444433222222 22223333333332 254555666677777777888899999999999999
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCc-----chh--hhH
Q psy17630 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP-----DVK--GLA 242 (372)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-----~~r--~~~ 242 (372)
+++..+.++..++.+++.+. .. .+....++..++.+.+.+ ...+++|++++|..+. .+| |..
T Consensus 303 ~~~~~~~~~~~i~~~~~~f~---~~-------~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~ 371 (467)
T COG2211 303 KLFLIGLLLLAVGYLLLYFT---PA-------GSVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIV 371 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhh---cC-------cchHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhH
Confidence 99999988888888776444 11 123344444444444544 3456888999988652 333 777
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17630 243 LGVICILGSLIEFVVVK 259 (372)
Q Consensus 243 ~~~~~~~~~~~~~~~~~ 259 (372)
.+...++..++.+++..
T Consensus 372 ~s~~tF~~K~g~ala~~ 388 (467)
T COG2211 372 YSGMTFFRKLGLALAGF 388 (467)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888888776
No 175
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.16 E-value=2.2e-09 Score=100.98 Aligned_cols=153 Identities=21% Similarity=0.229 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC-cchhhHhhHHHHHHHHHHHHHHHHhhcc-------cccccc--ccHHHHHHHHH
Q psy17630 144 GQNIVGFIQVIMTFFSSLLVDKAGR-RPLLLISDICMAICIGALGYYFYLLKLD-------EKLVDG--LGLLPVASLAI 213 (372)
Q Consensus 144 ~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~ 213 (372)
......+...+.+++..++.+|+|+ |....++.++.++++....+.....++. ....+. ..+..++.+..
T Consensus 310 ~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (477)
T TIGR01301 310 GLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAI 389 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHH
Confidence 3445556666777788899999995 6776888888888777765442211100 000000 02445555555
Q ss_pred HHHhhcccccccceeeeccCCCcch--hhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhh
Q psy17630 214 YIIVFSVGFGPIPGVMMGELFTPDV--KGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKT 291 (372)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (372)
.++..+.. ..++|+++++..+++. .|..+|+.|.+..+...+... .
T Consensus 390 ~Gi~~A~~-~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl-------------------------------~ 437 (477)
T TIGR01301 390 LGIPLAIT-YSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSL-------------------------------G 437 (477)
T ss_pred hhHHHHHH-HHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHH-------------------------------H
Confidence 55555543 3578889999988544 488999999888877777776 4
Q ss_pred hHHHHHhcc--cchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 292 FDDVERAFG--TGVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 292 ~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
.+.+.+..| ....+.+.++..+++++.+++.+|+++.
T Consensus 438 ~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 438 SGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 554444444 2235666677777888888878887643
No 176
>KOG0255|consensus
Probab=99.16 E-value=2.9e-10 Score=109.94 Aligned_cols=146 Identities=16% Similarity=0.113 Sum_probs=112.9
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHH
Q psy17630 134 TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI 213 (372)
Q Consensus 134 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (372)
...+.....+..++..++..+|+++.|.++||+|||++++.++++..++.+..+++ .+.+..++..++
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a------------~~~~~~~~~Rfl 180 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA------------PNYWMFLIFRFL 180 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh------------CcHHHHHHHHHH
Confidence 35566777888999999999999999999999999999999999999998877666 223444555555
Q ss_pred HHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhH
Q psy17630 214 YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFD 293 (372)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (372)
.+++.+ +...+.+.+..|+++++.|+.+..+ ......++.+++. ...
T Consensus 181 ~G~~~~-~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~-------------------------------~~a 227 (521)
T KOG0255|consen 181 SGFFGS-GPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPA-------------------------------GAA 227 (521)
T ss_pred HHhhcc-chhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHH-------------------------------HHH
Confidence 544443 4445666889999999999999999 7777777777776 666
Q ss_pred HHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 294 DVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 294 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
++.. +||+.+++......+..++ +++.||++
T Consensus 228 ~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 228 YITR--DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred HHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 6655 8998888888877777665 44566864
No 177
>PRK11462 putative transporter; Provisional
Probab=99.15 E-value=1.9e-09 Score=102.30 Aligned_cols=108 Identities=11% Similarity=-0.014 Sum_probs=60.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcc
Q psy17630 141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV 220 (372)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (372)
.+.......+..+++.+++++++||+|||+.+..+..+..+..+++.+. ... +.........+.+.+. .
T Consensus 265 ~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~l~g~~~-~ 333 (460)
T PRK11462 265 FVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV---PMQ-------ASITMFVFIFVIGVLH-Q 333 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh---chh-------HHHHHHHHHHHHHHHH-H
Confidence 3455667778888999999999999999988765544333322222111 110 1112222223333332 2
Q ss_pred cccccceeeeccCCC-----cchh--hhHHHHHHHHHHHHHHHHHH
Q psy17630 221 GFGPIPGVMMGELFT-----PDVK--GLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 221 ~~~~~~~~~~~e~~p-----~~~r--~~~~~~~~~~~~~~~~~~~~ 259 (372)
...+..+++++|..+ +..| |...+...+...++..+++.
T Consensus 334 ~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~ 379 (460)
T PRK11462 334 LVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGA 379 (460)
T ss_pred HHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 233444566777755 2344 44455555777777777665
No 178
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.14 E-value=1.2e-09 Score=104.58 Aligned_cols=164 Identities=14% Similarity=0.110 Sum_probs=111.3
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc-----CCcch-hhHhhHHHHHHHHHHHHHHHHh
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-----GRRPL-LLISDICMAICIGALGYYFYLL 193 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~-~~~~~~~~~~~~~~~~~~~~~~ 193 (372)
.......+|.++++.|.+..+.+........ .++.+++|+++||+ |||+. +..+.+..+++...+++. .
T Consensus 28 ~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~---~ 102 (491)
T PRK11010 28 LALTSGTLQAWMTVENIDLKTIGFFSLVGQA--YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL---E 102 (491)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc---C
Confidence 4456667788888888888787776333322 26889999999999 99986 556666665655554432 0
Q ss_pred hccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccc
Q psy17630 194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLA 273 (372)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (372)
. ..+.+.......+.+.+.+ ...+...++..|.+|+++|+.+.++......++..+++.
T Consensus 103 ~------~~~l~~l~~~~~l~~~~~a-~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~-------------- 161 (491)
T PRK11010 103 P------GTQLRWLAALAVVIAFCSA-SQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGG-------------- 161 (491)
T ss_pred C------cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHH--------------
Confidence 0 0112233333333333333 333444588899999999999999999988888888887
Q ss_pred hhhhhhhcchhhhhhhhhhHHHHH-hcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 274 LGVICILGSLIEFVVVKTFDDVER-AFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
....+.+ ..|||..|++.+++.++..+..+ +.||+.
T Consensus 162 -----------------l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~ 198 (491)
T PRK11010 162 -----------------LALWLADRYLGWQGMYWLMAALLIPCIIATL-LAPEPT 198 (491)
T ss_pred -----------------HHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCc
Confidence 6666767 46999999998887777655544 467753
No 179
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.13 E-value=3.5e-10 Score=103.82 Aligned_cols=124 Identities=12% Similarity=-0.025 Sum_probs=91.7
Q ss_pred HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
......+|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+.. .. +
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~-----~----- 85 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA-----P----- 85 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh-----c-----
Confidence 344567888899999999999999999999999999999999999999999998877766555443 11 1
Q ss_pred ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+.+..++...+.+.+.+...... ..++.|.+| ++|+++.++.+....++..+++.
T Consensus 86 --~~~~l~~~~~~~g~g~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~ 140 (355)
T TIGR00896 86 --GTALLFAGTALIGVGIAIINVLL-PSLIKRDFP-QRVGLMTGLYSMALMGGAALAAA 140 (355)
T ss_pred --cHHHHHHHHHHHHHHHHHHhccc-hHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHH
Confidence 12333444444444444322222 255677776 67999999999888888888887
No 180
>KOG3764|consensus
Probab=99.10 E-value=2.2e-10 Score=101.63 Aligned_cols=152 Identities=13% Similarity=0.079 Sum_probs=126.2
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHH
Q psy17630 134 TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI 213 (372)
Q Consensus 134 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (372)
.+-...+.+++.....+.+++.+++.|.+.||+|+|..+++|++++....+++++. ...+..++...+
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg------------~sy~~l~vAR~L 168 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG------------NSYPMLFVARSL 168 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc------------chhHHHHHHHHH
Confidence 35567889999999999999999999999999999999999999999999887765 223455666667
Q ss_pred HHHhhcccccccceeeeccCCCcch-hhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhh
Q psy17630 214 YIIVFSVGFGPIPGVMMGELFTPDV-KGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTF 292 (372)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (372)
-+.+.++... ...++++|.||.+. |+.++|+.-.+..+|-.++|. ..
T Consensus 169 QgvgsA~~~t-sglamlAd~f~~d~er~~vmGialgfislG~lvgPp-------------------------------fG 216 (464)
T KOG3764|consen 169 QGVGSAFADT-SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPP-------------------------------FG 216 (464)
T ss_pred hhhhHHHHHh-hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCC-------------------------------cc
Confidence 6666665544 33478899999876 699999999999999999998 88
Q ss_pred HHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCCC
Q psy17630 293 DDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNK 329 (372)
Q Consensus 293 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 329 (372)
+.+++..|.+.+|++++.++++...+-++.++.++.+
T Consensus 217 GilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 217 GILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred cchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 8999999999999999999999988877666655433
No 181
>KOG0254|consensus
Probab=99.09 E-value=6.4e-10 Score=107.15 Aligned_cols=141 Identities=12% Similarity=0.119 Sum_probs=110.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcc
Q psy17630 141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV 220 (372)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (372)
.+++.+...++..++++++|+++|++|||+.++++.++..++.++.+.+. +.....+...+.+++.+.
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~------------~~~~l~~GR~l~G~g~G~ 158 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP------------SWYQLIVGRILTGLGVGG 158 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHhccchhh
Confidence 37999999999999999999999999999999999999999999887762 345666777777766665
Q ss_pred cccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHh--
Q psy17630 221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA-- 298 (372)
Q Consensus 221 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 298 (372)
....++ .|.+|..|++.||...+.......+|..++ + ..+.....
T Consensus 159 ~~~~~p-iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~-------------------------------~~~~~~~~~~ 205 (513)
T KOG0254|consen 159 ASVLAP-VYISEIAPAHIRGTLVSLYQLFITIGILLG-Y-------------------------------CINYGTSKVY 205 (513)
T ss_pred hhhcch-hhHhhcCChhhhHHHHHHHHHHHHHHHHHH-H-------------------------------HHhhhhccCC
Confidence 555555 899999999999999888877766554444 4 44444443
Q ss_pred cccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 299 FGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 299 ~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
.+||..+.+..+.+++..+. .++.||+.
T Consensus 206 ~~Wr~~~~~~~i~~~~~~~~-~~~~pesp 233 (513)
T KOG0254|consen 206 AGWRIPLGLALIPAVILALG-MLFLPESP 233 (513)
T ss_pred ccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 48998887777777777766 66888864
No 182
>KOG2533|consensus
Probab=99.09 E-value=1.2e-09 Score=102.91 Aligned_cols=153 Identities=16% Similarity=0.031 Sum_probs=117.9
Q ss_pred HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHH
Q psy17630 132 IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASL 211 (372)
Q Consensus 132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (372)
++.++...+.+...+++.++.+++.+.++.+.||++-.+.+....++.++..++.... .+.+..++..
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~------------~s~~~~ialr 141 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV------------HSFPGLIALR 141 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH------------hhhHHHHHHH
Confidence 4556777889999999999999999999999999995555544444433333222111 1245667777
Q ss_pred HHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhh
Q psy17630 212 AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKT 291 (372)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (372)
++.+...+.++.+.. .+++..|.+++|++-+++.+....+|+++++. +
T Consensus 142 ~llGl~es~~wP~~~-~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggl-------------------------------i 189 (495)
T KOG2533|consen 142 FLLGLFESGGWPGVV-AILGNWYGKSERGLRMGIWYASASLGNIFGGL-------------------------------I 189 (495)
T ss_pred HHHHHHhcccchHHH-HHHHhhcChhhhhhhHHHHHHhcchhhHHHHH-------------------------------H
Confidence 788878777777666 88899999999999999999999999988887 4
Q ss_pred hHHHH------HhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 292 FDDVE------RAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 292 ~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
...+. ...|||+.|++-+++.++..+++++++|+...
T Consensus 190 A~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 190 AYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred HHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 44432 34689999999999999999999989987544
No 183
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.09 E-value=5.5e-09 Score=91.96 Aligned_cols=179 Identities=16% Similarity=0.136 Sum_probs=120.5
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc-CCcc
Q psy17630 92 LVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-GRRP 170 (372)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~ 170 (372)
-..++|+|.-| ...+++..+...++....|+|.++.|.|+|..+.+.+.....+.+++.++....+.+|. .+|+
T Consensus 201 ~~~vw~~~~aW-----~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~ 275 (395)
T COG2807 201 VRKVWRSPLAW-----QVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRP 275 (395)
T ss_pred ccccccCchhH-----HHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 34567777333 33344555555688899999999999999999999999999999999999999999975 4566
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCC-CcchhhhHHHHHHHH
Q psy17630 171 LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICIL 249 (372)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~ 249 (372)
..+....++.++.+.+.+. .. ...+....+.+.+.+..+ +...+.+.+-. .++.-+.-.++.+.+
T Consensus 276 ~~~~~~~~~l~G~~G~~~~--P~-----------~~~~lw~~llG~G~G~~F-~laL~li~~rs~~a~~Aa~LSgmaQg~ 341 (395)
T COG2807 276 LVVLALLLMLVGLVGLLLA--PG-----------QLPILWALLLGLGQGGAF-PLALTLILLRSSDAAIAAALSGMAQGV 341 (395)
T ss_pred HHHHHHHHHHHHHHHHHHh--hh-----------hHHHHHHHHHhCccchHH-HHHHHHHHhhcCChHHHHHHHHHhhhh
Confidence 6666666666666555433 11 111222334444433332 23323444443 344457778888889
Q ss_pred HHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHHhhhh
Q psy17630 250 GSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 320 (372)
+++....+|. +++.+.|..| |+.+...++...++..+..+
T Consensus 342 GYllAa~GP~-------------------------------l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 342 GYLLAAFGPW-------------------------------LFGFLHDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred hHHHHhhhhh-------------------------------hHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 9999998876 65566666666555555544
No 184
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.09 E-value=6.7e-09 Score=97.11 Aligned_cols=147 Identities=12% Similarity=-0.005 Sum_probs=85.8
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcC--CCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy17630 92 LVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATN--SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169 (372)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr 169 (372)
.++++++|..+.. .+..+++...+ .....+.+.+.++.+ .+................+|.++++++.||+++|
T Consensus 225 ~~~~~~~~~~~~~-~l~~f~yvg~e----~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~ 299 (410)
T TIGR00885 225 LSRLARIRHYREG-VIAQFFYVGVQ----IMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH 299 (410)
T ss_pred HHHHHhChhHHHH-HHHHHHHHHHH----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 3456666644432 22222222222 233456666666543 2323334445555677889999999999999999
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHH
Q psy17630 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL 249 (372)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 249 (372)
+.+.+...+..++.++.... . .........+.+.+.+..+ |..+....+..+++.+..+..+...
T Consensus 300 ~~l~i~~~~~~~~~ll~~~~----~---------~~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~- 364 (410)
T TIGR00885 300 KVLMAYAIIGMALCLGSIFA----G---------GHVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMA- 364 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHc----C---------ChHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHH-
Confidence 98888777777666554332 0 1122344444445555555 5555777888876655444444333
Q ss_pred HHHHHHHHHH
Q psy17630 250 GSLIEFVVVK 259 (372)
Q Consensus 250 ~~~~~~~~~~ 259 (372)
.+|+++.|.
T Consensus 365 -~~Gga~~p~ 373 (410)
T TIGR00885 365 -IIGGGIVPP 373 (410)
T ss_pred -HhccchHHH
Confidence 388888888
No 185
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.07 E-value=3.2e-09 Score=112.18 Aligned_cols=145 Identities=15% Similarity=0.049 Sum_probs=96.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhc
Q psy17630 140 SPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFS 219 (372)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (372)
..++..++..+..++.++++|+++||+|||+++.....+..+........+.. . +.+.+++..++.+.+.+
T Consensus 53 ~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~--~-------s~~~l~~~~~l~gi~~a 123 (1140)
T PRK06814 53 LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL--N-------SVPLLFAALFLMGIHSA 123 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH--h-------hHHHHHHHHHHHHHHHH
Confidence 34566667788889999999999999999997644222222222211111111 1 13444555555544444
Q ss_pred ccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhc
Q psy17630 220 VGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF 299 (372)
Q Consensus 220 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (372)
...+...+++.|++|++.|+.++++.++...++..++|. +.+.+....
T Consensus 124 -~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~-------------------------------l~g~l~~~~ 171 (1140)
T PRK06814 124 -LFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTI-------------------------------IGGLATISG 171 (1140)
T ss_pred -hhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHH-------------------------------HHHHHHhcc
Confidence 345566689999999999999999999999999999999 888888888
Q ss_pred ccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630 300 GTGVAFGTFAVYCIIGTFFVYFVVPET 326 (372)
Q Consensus 300 g~~~~~~~~~~~~~~~~~~~~~~~~e~ 326 (372)
+|+..|.....+.++. ++..+++|++
T Consensus 172 ~~~~~~~~~~~~~~~~-~~~~~~~~~~ 197 (1140)
T PRK06814 172 NFVILVALLMGIAVLG-WLASLFIPKT 197 (1140)
T ss_pred ccHHHHHHHHHHHHHH-HHHHhhCCCC
Confidence 9987773333333333 3334456654
No 186
>KOG2504|consensus
Probab=99.07 E-value=1.9e-09 Score=102.42 Aligned_cols=179 Identities=12% Similarity=0.039 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHH
Q psy17630 101 TVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA 180 (372)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~ 180 (372)
+-|......++.........+.+..+.+.+.++++.+..+.++..++......+..++.+.+.||+|.|.+.+.|.++..
T Consensus 43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence 33444444444433333334455566777788888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccHH-HHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 181 ICIGALGYYFYLLKLDEKLVDGLGLL-PVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+++++..++. +.|. .+..-.+.+.++++.+.|.. ..+...| .++|+.++|+......+|.++.|.
T Consensus 123 ~g~~lssF~~------------~i~~l~lt~gvi~G~G~~~~~~pai-viv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~ 188 (509)
T KOG2504|consen 123 LGLLLSSFAT------------SLWQLYLTFGVIGGLGLGLIYLPAV-VILGTYF-EKKRALATGIAVSGTGVGTVVFPP 188 (509)
T ss_pred HHHHHHHHHh------------hHHHHHHHHHHHhhccchhhhcchh-hhhhhHh-HHHHHHHHhhhhccCCcceeeHHH
Confidence 9998877662 1222 23333344445555555555 4555555 588999999999999999999998
Q ss_pred hhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheecc
Q psy17630 260 TVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVP 324 (372)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 324 (372)
+...+.+..|||..+++++.+.+-..+......|
T Consensus 189 -------------------------------l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 189 -------------------------------LLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred -------------------------------HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8899999999999999999888776666654555
No 187
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.07 E-value=9.3e-10 Score=104.57 Aligned_cols=125 Identities=8% Similarity=-0.054 Sum_probs=89.3
Q ss_pred HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHH
Q psy17630 132 IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASL 211 (372)
Q Consensus 132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (372)
...|+++.+.+......+++.+++..+.+++.+|++.|+++.++.++.+++.+............ ......+......
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~--~gi~~~~~~~~~~ 358 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLA--FGISDEVFVLGDS 358 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccc--cCCCCeeeeeehh
Confidence 34699999999999999999999999999999999999999988888777664432110000000 0001122223333
Q ss_pred HHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 212 AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.+...+.+....+.. .++.+..|++.+|+.+++.+.+.+++..+++.
T Consensus 359 ~l~~~~~g~~~~~~~-~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~ 405 (468)
T TIGR00788 359 IIAEVLAQLKFMPFL-VLLARLCPSGCESSVFALLASILHLGSSVSGF 405 (468)
T ss_pred HHHHHHHHHHHccHH-HHHHHhCCCCceehHHHHHHHHHHHHHHHHHH
Confidence 444445555555554 78899999999999999999999999999887
No 188
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.06 E-value=5.4e-12 Score=119.70 Aligned_cols=148 Identities=13% Similarity=0.160 Sum_probs=102.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcc
Q psy17630 141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV 220 (372)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (372)
.++......++..+|+++.|+++||+|||+.++++.++..++.++.++.... .+.+...+...+.+++.+.
T Consensus 48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~---------~~~~~~~~~R~~~G~~~g~ 118 (451)
T PF00083_consen 48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY---------NNFWMLLIGRFLIGFGIGG 118 (451)
T ss_pred HHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc---------ccccccccccccccccccc
Confidence 4677888999999999999999999999999999999999888887665111 1244555556666555554
Q ss_pred cccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc
Q psy17630 221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG 300 (372)
Q Consensus 221 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 300 (372)
... ....++.|..|++.|+...++......+|..++... .. ......+..+
T Consensus 119 ~~~-~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~------------------------~~----~~~~~~~~~~ 169 (451)
T PF00083_consen 119 AYV-VSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLI------------------------GY----IVSYYSDNWG 169 (451)
T ss_pred ccc-cccccccccccccccccccccccccccccccccccc------------------------cc----cccccccccc
Confidence 444 444899999999999998888776665555544430 00 1111122356
Q ss_pred cchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 301 TGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
||..+.+.++.+++..+. ..++||+.
T Consensus 170 Wr~~~~~~~~~~l~~~~~-~~~~pESP 195 (451)
T PF00083_consen 170 WRILLIFGAIPSLLVLLL-RFFLPESP 195 (451)
T ss_pred cccccccccccccccccc-cccccccc
Confidence 888777776666655544 45789973
No 189
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.06 E-value=4e-09 Score=97.74 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceee
Q psy17630 150 FIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVM 229 (372)
Q Consensus 150 ~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (372)
+...+++++.|+++||+|||+++..+.++..++.+++.......... .......++...+.+.+.+... +....+
T Consensus 46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~-~~~~~~ 120 (394)
T TIGR00883 46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIG----IWAPILLLLARLIQGFSLGGEW-GGAALY 120 (394)
T ss_pred HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhH----HHHHHHHHHHHHHHHhhccccc-cccHHH
Confidence 33456889999999999999999999988888877765541110000 0000122333334433333333 333478
Q ss_pred eccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 230 MGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 230 ~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+.|.+|+++|+...++......+|..+++.
T Consensus 121 ~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~ 150 (394)
T TIGR00883 121 LAEYAPPGKRGFYGSFQQVGAPVGLLLAAL 150 (394)
T ss_pred hhhcCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988888888877776
No 190
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.06 E-value=1.8e-09 Score=100.64 Aligned_cols=167 Identities=12% Similarity=0.128 Sum_probs=98.7
Q ss_pred hHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630 120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (372)
Q Consensus 120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
......+.|.++.+ .|.+..+.++......+...++.++.|+++||+|||+.++.+....++...............
T Consensus 18 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 95 (396)
T TIGR00882 18 MSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQ-- 95 (396)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHH--
Confidence 44555566666654 699999999999999999999999999999999999999877666554433221110000000
Q ss_pred ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC 278 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (372)
........+.....+.+.+.... ....+..|.. +.++...+.....+.+|..++|.
T Consensus 96 --~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~------------------- 151 (396)
T TIGR00882 96 --SNILVGAIVGGLYLGFVFSAGAG-AIEAYIEKVS--RNSNFEYGKARMFGCVGWALCAS------------------- 151 (396)
T ss_pred --HHHHHHHHHHHHHHHHHhccchh-hHHHHHHHhh--hhcccccchhhhhcccHHHHHHH-------------------
Confidence 00011111112222233332222 2223434432 22344556666667777777777
Q ss_pred hhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccC
Q psy17630 279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE 325 (372)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e 325 (372)
+.+.+. ..+|+.+|++.+.+.++..++.+...||
T Consensus 152 ------------~~g~l~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (396)
T TIGR00882 152 ------------IAGILF-SIDPQIVFWLGSGFALILMLLLMFAKPK 185 (396)
T ss_pred ------------HHhhhh-ccCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 555443 4589989988887777766555433444
No 191
>KOG1330|consensus
Probab=99.06 E-value=8.5e-10 Score=99.92 Aligned_cols=216 Identities=14% Similarity=0.112 Sum_probs=108.9
Q ss_pred echhhHHhhhhh-------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHH
Q psy17630 4 SGILYTYVIGSL-------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELD 76 (372)
Q Consensus 4 ~G~~~~~~i~~~-------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 76 (372)
.|..+|+.++.. |||.|++. ++++++.+++.+++++|.+| +..++. .+++..
T Consensus 168 vGsglG~vvgs~va~~~~~Wr~af~~~---avl~vi~~~L~~~f~~eP~r-----ga~~~~-------~~~~~~------ 226 (493)
T KOG1330|consen 168 VGSGLGYVVGSVVASLTFWWRWAFRGS---AVLGVIVGLLVFLFVREPER-----GARDEV-------DGENKM------ 226 (493)
T ss_pred cccceeEEeeeeeccCccceEEEEEee---hHHHHHHHHHHHhhccCccc-----cccccc-------ccCCcC------
Confidence 444444444444 99999999 99999999999999999754 111110 000000
Q ss_pred HHHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHH----hcCCCCCChhhHHHHHHHHH
Q psy17630 77 ELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILI----ATNSKIISPNYGQNIVGFIQ 152 (372)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~ 152 (372)
.+......++.+.+.+++.+....+-.. ...+. ...+.++.|.+.. -.|++..+..++..+...++
T Consensus 227 -----~~~~ts~~kDl~~l~~~~v~v~~sl~~~-a~~fv----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G 296 (493)
T KOG1330|consen 227 -----VKPFTSVWKDLKVLAKIKVFVLSSLGII-AAQFV----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGG 296 (493)
T ss_pred -----CCCccchHHHHHHHHccCceeeehHHHH-HHHHh----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhc
Confidence 0000111223344444442222221111 11111 2334455554432 23667777778888899999
Q ss_pred HHHHHHHHHHHhhcCCc----chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhccccccccee
Q psy17630 153 VIMTFFSSLLVDKAGRR----PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGV 228 (372)
Q Consensus 153 ~~~~~~~g~l~dr~grr----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (372)
.+|.+++|.++||+.|+ ....+.-+..+.+.............. ..++.+..++++.+........+.+.. -
T Consensus 297 ~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~---~~~s~~~~~il~~~g~~~~~~~~a~n~-~ 372 (493)
T KOG1330|consen 297 SLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF---TSSSMIFGLILFLVGETISWFNWATNN-P 372 (493)
T ss_pred hhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHhccccccc-c
Confidence 99999999999995331 222222222222211111111000000 011122222222222222233444444 4
Q ss_pred eeccCCCcchhhhHHHHHHHHHHHHH
Q psy17630 229 MMGELFTPDVKGLALGVICILGSLIE 254 (372)
Q Consensus 229 ~~~e~~p~~~r~~~~~~~~~~~~~~~ 254 (372)
+..|+.|++.|.++.++...+..+.+
T Consensus 373 i~l~vV~p~~Rt~a~a~~~~~~h~fg 398 (493)
T KOG1330|consen 373 IFLEVVPPSRRTTAYALDTVFEHIFG 398 (493)
T ss_pred eeeEecCcccccHHHHHHHHHHHHhc
Confidence 56889999999999999876654443
No 192
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.05 E-value=5.2e-09 Score=110.75 Aligned_cols=109 Identities=12% Similarity=0.061 Sum_probs=80.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcc
Q psy17630 141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV 220 (372)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (372)
.++..++..++.+++++++|+++||+|||++++++.++..+..++..+..... +.+.+++..++.+++.+.
T Consensus 49 ~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~~~ 119 (1146)
T PRK08633 49 TAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLG---------WFWLAFAVTFLLGAQSAI 119 (1146)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHc---------cHHHHHHHHHHHHHHHHh
Confidence 46677788888999999999999999999999988776665555443321111 123444444555444443
Q ss_pred cccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 221 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
..+...++++|++|++.|+.++++......++..+++.
T Consensus 120 -~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~ 157 (1146)
T PRK08633 120 -YSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTA 157 (1146)
T ss_pred -hchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHH
Confidence 34455588999999999999999999999999888887
No 193
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.04 E-value=3e-09 Score=101.64 Aligned_cols=153 Identities=17% Similarity=0.129 Sum_probs=110.0
Q ss_pred hHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHH
Q psy17630 127 LKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLL 206 (372)
Q Consensus 127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (372)
.+.+..+..-|+...+++.....+-.++.++++|.++||++||++++.+-++.++..+.+.+....... +.+.
T Consensus 33 ~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~-------~~~~ 105 (524)
T PF05977_consen 33 LAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLL-------SPWL 105 (524)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcC-------CHHH
Confidence 333344444477788888888899999999999999999999999999988877666655544332222 2344
Q ss_pred HHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhh
Q psy17630 207 PVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEF 286 (372)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (372)
++...++.+.+.+ ...|...++++|+.|+++...++++.....++...++|.
T Consensus 106 Ll~~~fl~g~~~a-~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPa--------------------------- 157 (524)
T PF05977_consen 106 LLILTFLLGIGSA-FFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPA--------------------------- 157 (524)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccch---------------------------
Confidence 4444444444433 344555588999999999999999999999999999998
Q ss_pred hhhhhhHHHHHhcccchhhHHHHHHHHHHHhh
Q psy17630 287 VVVKTFDDVERAFGTGVAFGTFAVYCIIGTFF 318 (372)
Q Consensus 287 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 318 (372)
+.+.+....|....|.+-++..++....
T Consensus 158 ----lgG~Lva~~G~~~~f~inalsfl~~i~~ 185 (524)
T PF05977_consen 158 ----LGGILVAFFGAAAAFLINALSFLISILA 185 (524)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777666554444433
No 194
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.04 E-value=6.5e-08 Score=92.69 Aligned_cols=111 Identities=15% Similarity=0.052 Sum_probs=68.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchh-hHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhh
Q psy17630 140 SPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLL-LISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVF 218 (372)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (372)
..++......++..++.++.|.+..+++|-|.. +++..++.+++-+++.. ..+ +....+....+.+.+.
T Consensus 350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~---~~~-------n~~~~i~~~~l~g~gi 419 (599)
T PF06609_consen 350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV---RPD-------NKNAAIAFLVLAGFGI 419 (599)
T ss_pred eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc---cCC-------CcchHHHHHHHHHHhH
Confidence 567788888889999999999999998875544 45655555443333222 111 1112222333333333
Q ss_pred cccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhh
Q psy17630 219 SVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTV 261 (372)
Q Consensus 219 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 261 (372)
+....+.. +...-..|++.-+++.++...+..+|+.++...+
T Consensus 420 G~~~~~~~-~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 420 GGILVPAI-VIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIY 461 (599)
T ss_pred HHHHHHHH-HeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 32222222 4444567888889999999998888888776644
No 195
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.96 E-value=5e-09 Score=98.93 Aligned_cols=167 Identities=14% Similarity=0.059 Sum_probs=105.3
Q ss_pred HHHhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh----cCCcc-hhhHhhHHHHHHHHHHHHHHHHhhcc
Q psy17630 123 VIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRP-LLLISDICMAICIGALGYYFYLLKLD 196 (372)
Q Consensus 123 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (372)
...|++.++ ++.|.++.+.+...+...+...+..++.|+++|| +|||+ .++.+.+..+++.+++... +...
T Consensus 18 ~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~---~~~~ 94 (437)
T TIGR00792 18 VSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTT---PDFS 94 (437)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhC---CCCC
Confidence 334444444 4569999999999999999999999999999998 67755 5556666666655544222 1100
Q ss_pred ccccccccHHHHHHHHHHHHhhcccccccceeeeccCC-CcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchh
Q psy17630 197 EKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALG 275 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (372)
........+....++..+.+....+.. ++..|+. ++++|++..++......+++.+++.
T Consensus 95 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~---------------- 154 (437)
T TIGR00792 95 ---ATGKLVYAYITYILLGLFYSFVNIPYW-SLVPAITLDPRERESLSTFRRFGATLGGLLVAV---------------- 154 (437)
T ss_pred ---cchHHHHHHHHHHHHHHHHHhhcccHh-hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 000112222223333334333333333 6667876 5688999988887777777766554
Q ss_pred hhhhhcchhhhhhhhhhHHHH-------HhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 276 VICILGSLIEFVVVKTFDDVE-------RAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+.+.+. +..+|+..+.+.++++++..++.++..||++
T Consensus 155 ---------------~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 155 ---------------IVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred ---------------HHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 222222 2457888888888888777776666677653
No 196
>KOG0252|consensus
Probab=98.95 E-value=1.8e-08 Score=91.19 Aligned_cols=106 Identities=17% Similarity=0.080 Sum_probs=72.4
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHH
Q psy17630 136 SKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYI 215 (372)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (372)
+++...+.+..+..++.++|+++.|++.||+|||+++...++++.++.++++......... ...+.+.....+.+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~-----~~m~~L~~~R~~LG 155 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPL-----GVMMTLCFFRFLLG 155 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCc-----chhhHHHHHHHHhh
Confidence 3445567788889999999999999999999999999999999999888655442211110 11222223333333
Q ss_pred HhhcccccccceeeeccCCCcchhhhHHHHHH
Q psy17630 216 IVFSVGFGPIPGVMMGELFTPDVKGLALGVIC 247 (372)
Q Consensus 216 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 247 (372)
++.+ +-.|+..+.++|....+.||+-.+...
T Consensus 156 iGIG-GDYPlSAtI~SE~an~~~RGa~iaavF 186 (538)
T KOG0252|consen 156 IGIG-GDYPLSATIMSESANKKTRGAFIAAVF 186 (538)
T ss_pred cccc-CCCcchHHHhhhhhhhccccceeEEEE
Confidence 3333 334777788899999999988655543
No 197
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.95 E-value=9e-09 Score=95.50 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=100.7
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHH-HHHHHHHHHHHHhhcccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA-ICIGALGYYFYLLKLDEK 198 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 198 (372)
......++|.+.++.|.+..+.++..+...+...++.++.|.++||+||+........... +..+. .....+
T Consensus 20 ~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~----~~~~~~--- 92 (382)
T TIGR00902 20 YGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAA----FSAGAH--- 92 (382)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH----HHHhhh---
Confidence 4566778889999999999999999999999999999999999999998643322211111 11111 111111
Q ss_pred ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC 278 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (372)
+.+..++...+.+.+.+. ..+...++..|. .++|+...+.....+.+|..++|.
T Consensus 93 ----~~~~l~~~~~l~~~~~~~-~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~------------------- 146 (382)
T TIGR00902 93 ----NAWLLFIAIGLFALFFSA-GMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSA------------------- 146 (382)
T ss_pred ----hHHHHHHHHHHHHHHHcc-chhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHH-------------------
Confidence 133444444444444443 234443554442 467888999999999999999998
Q ss_pred hhcchhhhhhhhhhHHHHHhcccchhhHHHHHH
Q psy17630 279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY 311 (372)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 311 (372)
+.+.+.+..||+..|.+....
T Consensus 147 ------------l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 147 ------------LFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred ------------HHHHHHHHcChhHHHHHHHHH
Confidence 888899999999988776554
No 198
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.94 E-value=1.2e-08 Score=94.61 Aligned_cols=161 Identities=11% Similarity=0.037 Sum_probs=103.7
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhH-HHHHHHHHHHHHHHHhhcccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDI-CMAICIGALGYYFYLLKLDEK 198 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 198 (372)
......++|.+.++.|.+..+.++..+...+...++.++.|+++||+|||....-... ...+..+. .....+
T Consensus 20 ~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~----~~~~~~--- 92 (382)
T PRK11128 20 YGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVA----FWFGAH--- 92 (382)
T ss_pred HHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHH----HHHhcc---
Confidence 4566778888899999999999999999999999999999999999999532211111 11111111 111111
Q ss_pred ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC 278 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (372)
+.+..++...+.+.+.+.. .+...++..+. .++|+.+.+.....+.++..++|.
T Consensus 93 ----~~~~l~i~~~l~g~~~~~~-~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~------------------- 146 (382)
T PRK11128 93 ----SFWLLFVAIGLFNLFFSPL-VPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSA------------------- 146 (382)
T ss_pred ----cHHHHHHHHHHHHHHHccc-ccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHH-------------------
Confidence 2344444444444443333 33333454544 355777788888888899999998
Q ss_pred hhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630 279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET 326 (372)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 326 (372)
+.+.+.+..||+..|++.++..++..+. .++.||.
T Consensus 147 ------------lgg~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~ 181 (382)
T PRK11128 147 ------------LTGKLVSWFGEQAILWILTAGVASMLLG-QLLRPTI 181 (382)
T ss_pred ------------HHHHHHHHcChhHHHHHHHHHHHHHHHH-HHccCCC
Confidence 8888889999999887766544444333 3344543
No 199
>KOG2563|consensus
Probab=98.93 E-value=5e-08 Score=88.37 Aligned_cols=157 Identities=17% Similarity=0.187 Sum_probs=93.9
Q ss_pred hhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy17630 89 KKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGR 168 (372)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr 168 (372)
..+.+.+++++++. ...+........++.....+...+...|++....|.......+++++++.+.|.+.||.++
T Consensus 256 ~~si~~~~~n~~F~-----il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~ 330 (480)
T KOG2563|consen 256 PKSIKSCFKNRQFI-----ILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKK 330 (480)
T ss_pred HHHHHHHHcCccHH-----HHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 45678888886322 2222222222223344444443444457777899999999999999999999999999876
Q ss_pred cc-hhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHH
Q psy17630 169 RP-LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVIC 247 (372)
Q Consensus 169 r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 247 (372)
-+ ++++......++.+.+ ......... .+. +...+...+.++.+..|+..-+..|..-+..-++..|+.+
T Consensus 331 fk~~~~v~~~~~~v~~~~l-~~~t~~~~~-------~vi-v~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~ 401 (480)
T KOG2563|consen 331 FKLTTLVLYLFALVGTLML-LTCTLFLGD-------SVI-VFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLN 401 (480)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhhccCCc-------eEe-hhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEE
Confidence 43 3444333333332221 111111111 222 2223333344556777788788888865566677888888
Q ss_pred HHHHHHHHHHHH
Q psy17630 248 ILGSLIEFVVVK 259 (372)
Q Consensus 248 ~~~~~~~~~~~~ 259 (372)
..+++.+.+...
T Consensus 402 ~~gq~f~~~~~~ 413 (480)
T KOG2563|consen 402 LSGQIFGVILVF 413 (480)
T ss_pred eehhHHHHHHHH
Confidence 888888877776
No 200
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.89 E-value=2.3e-08 Score=93.04 Aligned_cols=175 Identities=15% Similarity=0.057 Sum_probs=108.3
Q ss_pred HHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHH--HHHHHHHHHHHHHH-HHHHhhcCCcchhhHhhHHHHH-HHHHH
Q psy17630 111 LLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQ--NIVGFIQVIMTFFS-SLLVDKAGRRPLLLISDICMAI-CIGAL 186 (372)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~-g~l~dr~grr~~~~~~~~~~~~-~~~~~ 186 (372)
...+.+...+.....+.|.++++.|.+..+.+... ....+...+.+++. ++..||+|||+..++.+.+... +...+
T Consensus 8 ~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~ 87 (390)
T TIGR02718 8 LLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASL 87 (390)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHH
Confidence 33344555567778899999999999999999974 55577787788877 4579999999987655433222 22222
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccC
Q psy17630 187 GYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFT 266 (372)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (372)
... .... ......+..... ...+.....+..-.+..|..+++.++...+.......+|..+++.
T Consensus 88 ~~~--~~~~------~~~~~~~~~~~~-~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~------- 151 (390)
T TIGR02718 88 ALV--GPDV------AGAGWAVGLLAC-ASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGA------- 151 (390)
T ss_pred HcC--Ccch------hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHH-------
Confidence 111 0000 001111222222 112222223333345667777777777777766666777777776
Q ss_pred CcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccC
Q psy17630 267 PDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE 325 (372)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e 325 (372)
....+.+..||+..|++.+++.++..+..++..|+
T Consensus 152 ------------------------~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 152 ------------------------GTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred ------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77778888999999999988877766665544343
No 201
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.88 E-value=7.7e-08 Score=86.11 Aligned_cols=174 Identities=12% Similarity=0.131 Sum_probs=115.9
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr 169 (372)
...+++++| +.+.-.+..+++...+ .....+++.+..+ .|.+..+.....+....+.++|.+++.++..|+...
T Consensus 228 ~~~~l~~~~-~~~~gvl~~FlYVG~E----va~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~ 302 (422)
T COG0738 228 GLSSLFQNK-HLRLGVLAIFLYVGAE----VAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE 302 (422)
T ss_pred hHHHHHhCh-HHHHHHHHHHHHHhHH----HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 467788887 4444444445555443 2445667777777 688899999999999999999999999999999999
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHH
Q psy17630 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL 249 (372)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 249 (372)
+.+.+..++..+.++...+. +....+....+.+.+.+..+ |..++...+..|.+ -..+ |..-..
T Consensus 303 k~Laf~a~~~ill~~~~~l~-------------~g~v~~~~l~~ig~F~simf-PTIfslal~~l~~~-ts~~-s~~l~m 366 (422)
T COG0738 303 KYLAFYALIAILLLLAVALI-------------GGVVALYALFLIGLFNSIMF-PTIFSLALKNLGEH-TSVG-SGLLVM 366 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------------cChHHHHHHHHHHHHhHHHH-HHHHHHHHhccCcc-cccc-ceeeee
Confidence 98888777666666655554 12233344444444444443 44446667777733 2222 223334
Q ss_pred HHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHH
Q psy17630 250 GSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGT 316 (372)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 316 (372)
..+|+++.|+ +.+.+.|..|....+.....+|.+-.
T Consensus 367 aivGGAiiP~-------------------------------l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 367 AIVGGAIIPP-------------------------------LQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred heecchHHHH-------------------------------HHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5578888888 99999999888766665555555554
No 202
>KOG0253|consensus
Probab=98.87 E-value=1.3e-08 Score=89.67 Aligned_cols=158 Identities=13% Similarity=-0.042 Sum_probs=106.0
Q ss_pred HHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccc
Q psy17630 124 IFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGL 203 (372)
Q Consensus 124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (372)
....|..-...|.+..+..++......+..+++..+|.++|++|||+.+.......++..++-+.. .+
T Consensus 98 s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s------------pn 165 (528)
T KOG0253|consen 98 SLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS------------PN 165 (528)
T ss_pred HHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC------------CC
Confidence 334444444558888888999999999999999999999999999999888877776655543322 12
Q ss_pred cHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcch
Q psy17630 204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSL 283 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (372)
...+.+...+ .+++.+..|+..++-.|..|...|...+-+. +...+|......
T Consensus 166 f~~L~~f~~l--~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~------------------------ 218 (528)
T KOG0253|consen 166 FASLCVFRAL--WGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEAL------------------------ 218 (528)
T ss_pred eehhhHHHHH--HhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHH------------------------
Confidence 2223333333 4444444555556668999999998876555 666666666665
Q ss_pred hhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 284 IEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 284 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
+.-..+...|||+..........+.+ ...+++||+.+
T Consensus 219 -------law~vm~~~gwr~~l~~~~~pl~~~a-~f~~w~~ESpR 255 (528)
T KOG0253|consen 219 -------LAWGVMSNFGWRYLLFTSSTPLMFAA-RFLVWVYESPR 255 (528)
T ss_pred -------HHHHHHHhhhHHHHHHHHHhHHHHHH-HHHhhcccCcc
Confidence 55556677899876555554444444 44457888743
No 203
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.87 E-value=5.9e-09 Score=95.74 Aligned_cols=144 Identities=19% Similarity=0.134 Sum_probs=106.6
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHH
Q psy17630 135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI 213 (372)
Q Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (372)
|++..++.-+...+....-+..+++||++|| +|+|++++.|.++..++.++++... ........+.+.+
T Consensus 57 g~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~----------~~~~~gl~i~L~~ 126 (498)
T COG3104 57 GFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS----------VSGPGGLYIGLAL 126 (498)
T ss_pred CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc----------cccccHHHHHHHH
Confidence 4888888777777777777888999999999 5999999999999999998876541 0112233444444
Q ss_pred HHHhhcccccccceeeeccCCCcch--hhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhh
Q psy17630 214 YIIVFSVGFGPIPGVMMGELFTPDV--KGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKT 291 (372)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (372)
...+.+..=..+. .++.|++|+++ |-.+.++.++..++|+++.|. +
T Consensus 127 I~iG~Gl~K~NiS-~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~-------------------------------i 174 (498)
T COG3104 127 IIVGTGLFKPNIS-SLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPI-------------------------------I 174 (498)
T ss_pred HHhccccccccHH-HHHHHhcCCCCcccCCCccEEEEEeehHHHHHHH-------------------------------H
Confidence 4444443333333 78899987653 566888888888999999999 9
Q ss_pred hHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630 292 FDDVERAFGTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 292 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 320 (372)
.+++.+..||...|...++-..++.+..+
T Consensus 175 ~~~~~~~~g~~~gF~~aavGm~~gl~~f~ 203 (498)
T COG3104 175 TGLLAINYGWHVGFGLAAVGMIIGLVIFL 203 (498)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888777766666665544
No 204
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.82 E-value=2.7e-08 Score=85.23 Aligned_cols=132 Identities=14% Similarity=0.018 Sum_probs=94.2
Q ss_pred chHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc
Q psy17630 119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEK 198 (372)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
..+.+..|.|.+.+++|++..+.+.+.....++..+| ++.|.+.|++|.+.++.+|.+...++...+..........
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~-- 93 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPS-- 93 (250)
T ss_pred cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCc--
Confidence 3567889999999999999999999999999998875 8899999999999999999999988887765543222111
Q ss_pred ccccccHHHHHHHHHHHHhhcccc-cccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 199 LVDGLGLLPVASLAIYIIVFSVGF-GPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.+.|... ......+.+..+ .........+.|| +.||++.|+.-...++++++...
T Consensus 94 ---~~~~~~~--~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~ 149 (250)
T PF06813_consen 94 ---LPVWLMC--LFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQ 149 (250)
T ss_pred ---cchHHHH--HHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHH
Confidence 1222222 222222323222 2222133356788 57999999999999999888777
No 205
>KOG3762|consensus
Probab=98.73 E-value=7.5e-08 Score=88.94 Aligned_cols=157 Identities=15% Similarity=0.150 Sum_probs=117.3
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
...+..++-..+++.+....-.+...+....+.++.-++.+++.+|+|+-+++..++.+..+=.+.+...
T Consensus 387 ~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L---------- 456 (618)
T KOG3762|consen 387 VGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL---------- 456 (618)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh----------
Confidence 3344445544577777667777788888889999999999999999999999999888777766554433
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHH-HHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL-GSLIEFVVVKTVRHRFTPDVKGLALGVIC 278 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (372)
.++|..+..-.+-++..+..+..+. +|++...|++.|.++.++.... .++|--+++.
T Consensus 457 --~n~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gsl------------------- 514 (618)
T KOG3762|consen 457 --QNPWMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSL------------------- 514 (618)
T ss_pred --cCchheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhh-------------------
Confidence 3478888888888888887777776 8999999999999999987643 3333344444
Q ss_pred hhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630 279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 320 (372)
+.+.+.+.++-+..|.++++.|++.+++..
T Consensus 515 ------------IGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 515 ------------IGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred ------------hhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 555566777888888888887777665543
No 206
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.72 E-value=3.7e-07 Score=81.79 Aligned_cols=129 Identities=11% Similarity=-0.047 Sum_probs=96.2
Q ss_pred HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
.......|.+.+.++.+..++++.......+..++++..+++.+|+|+|+.++.|+.++++++.++.-+....
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~------- 102 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK------- 102 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh-------
Confidence 4455677888788899999999999999999999999999999999999999999999999988763221110
Q ss_pred ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.....+...++.+.+.+.--... ..++..+.|++..+.-+.+...+..+|++++|.
T Consensus 103 --~y~~FL~~lFila~Gi~~Letaa-Np~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~ 158 (422)
T COG0738 103 --SYGFFLVALFILASGIGLLETAA-NPYVTLLGKPESAAFRLNLAQAFNGLGAILGPL 158 (422)
T ss_pred --hHHHHHHHHHHHHhhhHHHHhcc-chHHHHhCCchhHHHHHHHHHHhhhhHHHHHHH
Confidence 11222333333333333322333 367788888877788888899999999999998
No 207
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.69 E-value=4.2e-06 Score=79.90 Aligned_cols=147 Identities=10% Similarity=0.020 Sum_probs=91.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCC-----cchh--hHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHH
Q psy17630 141 PNYGQNIVGFIQVIMTFFSSLLVDKAGR-----RPLL--LISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAI 213 (372)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~g~l~dr~gr-----r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (372)
.+++.+...+..++..++..++-.|.+| +... .+|+++.+++...+++....... ....+.++.+....+
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~---~~~~s~~~~i~~~~~ 390 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADA---GGLTSPWFMVLIYLF 390 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCccCHHHHHHHHHH
Confidence 5677777777777777765544334433 3333 66777777776665543111111 112334555555555
Q ss_pred HHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhH
Q psy17630 214 YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFD 293 (372)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (372)
.+.+-. ...|....++.+..|++.||+.+|+......++..+++. +..
T Consensus 391 ~~~ge~-~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~-------------------------------~~~ 438 (475)
T TIGR00924 391 QTLGEL-MISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGY-------------------------------LAT 438 (475)
T ss_pred HHHHHH-HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHH
Confidence 554443 345566688899999999999999999888888888877 555
Q ss_pred HHHHhcccchhhHHHHHHHHHHHhhhhee
Q psy17630 294 DVERAFGTGVAFGTFAVYCIIGTFFVYFV 322 (372)
Q Consensus 294 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
...+..+|...+...+..+++..++.++.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
T TIGR00924 439 FGAVPQGVTGVFGKIGLVTLLVGVVMALM 467 (475)
T ss_pred HHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 55455566556666666666665555433
No 208
>PRK09669 putative symporter YagG; Provisional
Probab=98.69 E-value=9.7e-08 Score=90.45 Aligned_cols=166 Identities=14% Similarity=0.111 Sum_probs=99.5
Q ss_pred HHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh----cCCcch-hhHhhHHHHHHHHHHHHHHHHhhcc
Q psy17630 123 VIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRPL-LLISDICMAICIGALGYYFYLLKLD 196 (372)
Q Consensus 123 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (372)
...|++.++. ..|++....+.+..+..+...+..++.|+++|| +|||+. ++.+.+..+++..+... .+...
T Consensus 28 ~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~---~p~~~ 104 (444)
T PRK09669 28 VMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFY---TPDFG 104 (444)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHh---CCCCC
Confidence 3444444444 459999999999999999999999999999999 777554 55565666555443311 11100
Q ss_pred ccccccccHHHHHHHHHHHHhhcccccccceeeeccCC-CcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchh
Q psy17630 197 EKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALG 275 (372)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (372)
.........+...++..++.....|.. ++.+|+. ++++|....+.......+|+.+++.
T Consensus 105 ---~~~~~~~~~~~~~l~~~~~t~~~ip~~-al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~---------------- 164 (444)
T PRK09669 105 ---ATGKIIYACVTYILLSLVYTAINVPYC-AMPGAITNDPRERHSLQSWRFALSFIGGLIVSV---------------- 164 (444)
T ss_pred ---cchHHHHHHHHHHHHHHHHHhhcchHH-HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 001112222222333333333333333 6778887 5678988878777777777766654
Q ss_pred hhhhhcchhhhhhhhhhHHHH-------HhcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630 276 VICILGSLIEFVVVKTFDDVE-------RAFGTGVAFGTFAVYCIIGTFFVYFVVPET 326 (372)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 326 (372)
....+. ...+|+..+.++++++.+..+.+++..+|.
T Consensus 165 ---------------~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 165 ---------------IALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred ---------------HHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence 211111 134666677777777766666555555553
No 209
>KOG4686|consensus
Probab=98.68 E-value=3.5e-07 Score=77.95 Aligned_cols=124 Identities=15% Similarity=0.028 Sum_probs=84.4
Q ss_pred HHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHH-HHHHHHHHHHHhhcccc
Q psy17630 121 NVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI-CIGALGYYFYLLKLDEK 198 (372)
Q Consensus 121 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 198 (372)
..+....|.+++ .+|+++..++.+.+.......+.+++.|.++||+||+...+.+..+..+ +-..+.+.++
T Consensus 281 fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~l------- 353 (459)
T KOG4686|consen 281 FPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFL------- 353 (459)
T ss_pred HHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhc-------
Confidence 344445555554 4699999999999999999999999999999999999887765444333 3333322211
Q ss_pred ccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 199 LVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+++. .+.+.+...... ....|.+++-+.|.++-|++.+.++...+++-++.|.
T Consensus 354 ----sPy~---~m~~lGLsysll-AcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~I 406 (459)
T KOG4686|consen 354 ----SPYT---SMTFLGLSYSLL-ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPI 406 (459)
T ss_pred ----cHHH---HHHHHhhhHHHH-HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhh
Confidence 1222 223332222211 1123455677889999999999999999999999888
No 210
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.66 E-value=6.2e-07 Score=79.71 Aligned_cols=157 Identities=13% Similarity=0.055 Sum_probs=98.3
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHH
Q psy17630 129 RILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPV 208 (372)
Q Consensus 129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (372)
.++++.|++..++..+.....+...+...+.|.++||+|||+..+..+++..++++.-.. ++....+
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-------------~~~~~L~ 125 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-------------SNYPVLL 125 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-------------cccHHHH
Confidence 445678999999999999999999999999999999999999998888888887764211 1234445
Q ss_pred HHHHHHHHhhcccccccceeeeccC----CCcchhhhHHHHHHHHH-HHHHHHHHHhhccccCCcccccchhhhhhhcch
Q psy17630 209 ASLAIYIIVFSVGFGPIPGVMMGEL----FTPDVKGLALGVICILG-SLIEFVVVKTVRHRFTPDVKGLALGVICILGSL 283 (372)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~e~----~p~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (372)
+...+.+.....-++.-=.-++.|. +|.+..+...+...... .+.++....
T Consensus 126 ~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv------------------------ 181 (354)
T PF05631_consen 126 LGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGV------------------------ 181 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhH------------------------
Confidence 5555555444433332221233443 44444444444444222 223333333
Q ss_pred hhhhhhhhhHHHHHhcc--cchhhHHHHHHHHHHHhhhheeccCCCCC
Q psy17630 284 IEFVVVKTFDDVERAFG--TGVAFGTFAVYCIIGTFFVYFVVPETKNK 329 (372)
Q Consensus 284 ~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 329 (372)
+...+.+..+ ...+|.....+..++.++.....+|+.+.
T Consensus 182 -------~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 182 -------VANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred -------HHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 3344445444 35688777777777777666567776554
No 211
>KOG2816|consensus
Probab=98.64 E-value=7.8e-07 Score=83.48 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccce
Q psy17630 148 VGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPG 227 (372)
Q Consensus 148 ~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (372)
.++..++.++..|.++||+|||..+....+...+..+...+. .|+.++...+. ++++. ......
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~--------------~~~~~~~~~l~-g~~~~-~~s~~~ 134 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ--------------GYWFFLLLGLS-GGFSA-IFSVGF 134 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH--------------HHHHhhhcccc-cchhh-hhhhhh
Confidence 467888999999999999999999998888877776665544 12222211111 22222 233445
Q ss_pred eeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHH
Q psy17630 228 VMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGT 307 (372)
Q Consensus 228 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 307 (372)
++++|....+.|....++.+.....+..++|. +.+...+..|...++.+
T Consensus 135 a~vadis~~~~R~~~~gll~~~~~~~~~~~p~-------------------------------~~~~~~~~~~~a~~f~i 183 (463)
T KOG2816|consen 135 AYVADISSEEERSSSIGLLSGTFGAGLVIGPA-------------------------------LGGYLVKFLGIALVFLI 183 (463)
T ss_pred hheeeccchhHHHHHHHHHHHHHHHHHhHHHH-------------------------------HHHHHHHhcCchHHHHH
Confidence 89999999999999999999988888888888 88888888888889999
Q ss_pred HHHHHHHHHhhhheeccCCCCCCH
Q psy17630 308 FAVYCIIGTFFVYFVVPETKNKSL 331 (372)
Q Consensus 308 ~~~~~~~~~~~~~~~~~e~~~~~~ 331 (372)
..+..++..+...+++||+..++.
T Consensus 184 a~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 184 AAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred HHHHHHHHHHHHhhccccccCccc
Confidence 999999999988889999876543
No 212
>PTZ00207 hypothetical protein; Provisional
Probab=98.64 E-value=3.2e-06 Score=81.65 Aligned_cols=163 Identities=10% Similarity=-0.002 Sum_probs=96.8
Q ss_pred HHHHHhhHHHHHhc-CCCCCC--hhhHHHHHHHHHHHHHHHHHHHHhhcCCcc--------hhhHhhHHHHHHHHHHHHH
Q psy17630 121 NVVIFYLKRILIAT-NSKIIS--PNYGQNIVGFIQVIMTFFSSLLVDKAGRRP--------LLLISDICMAICIGALGYY 189 (372)
Q Consensus 121 ~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~dr~grr~--------~~~~~~~~~~~~~~~~~~~ 189 (372)
......+.++.+.+ |.+.++ ...+.+..++++.+|.+..|.++...-||+ ..+....++.++.+++...
T Consensus 370 l~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~ 449 (591)
T PTZ00207 370 FVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLT 449 (591)
T ss_pred heeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 34556667777887 662322 222778889999999999998883322222 1111111133333322222
Q ss_pred HHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcc
Q psy17630 190 FYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDV 269 (372)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (372)
.+ ...+.+...+.+++.+..++... ..++|+|. ++-|+-..+......+|+.+..-.
T Consensus 450 ----~p--------~~~L~~~~~lvg~~~G~~~~~~~-~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~--------- 506 (591)
T PTZ00207 450 ----LP--------KAALPLPYFIAAFANGFMAATIA-LVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRL--------- 506 (591)
T ss_pred ----CC--------ccHhHHHHHHHHHHhhHhHHHHH-HHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHH---------
Confidence 11 12445556666677776666555 77899999 777877777766666666655321
Q ss_pred cccchhhhhhhcchhhhhhhhhhHHHHHhcc-------------cchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 270 KGLALGVICILGSLIEFVVVKTFDDVERAFG-------------TGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+++.++|... ++.+|++.+++++++.++...+.-+++
T Consensus 507 ---------------------l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 507 ---------------------LYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred ---------------------HHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 4455544321 456789999999988887665544444
No 213
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.62 E-value=2.9e-06 Score=81.16 Aligned_cols=115 Identities=9% Similarity=-0.068 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcch-------hhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHH
Q psy17630 142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPL-------LLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIY 214 (372)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (372)
..++....+..++.+++.+++.||++||+. +.+|+++.+++.+.+.......... ....+.+..+....+.
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~--~~~~s~~~~i~~~~l~ 389 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADA--QGLTSPWFIVLVYLFQ 389 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCccCHHHHHHHHHHH
Confidence 445555667777888889999999999973 6677777776655433211111110 0112344444555555
Q ss_pred HHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 215 IIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 215 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+.+..+. .+....++.+..|++.++.++++.+....+++.++..
T Consensus 390 g~Ge~~~-~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~ 433 (489)
T PRK10207 390 SLGELFI-SALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGY 433 (489)
T ss_pred HHHHHHH-hHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554443 3444477788899999999999999888888887765
No 214
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.61 E-value=2.8e-07 Score=88.04 Aligned_cols=132 Identities=12% Similarity=0.097 Sum_probs=80.9
Q ss_pred HHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHh----hcCCc-chhhHhhHHHHHHHHHHHHHHHHhh
Q psy17630 121 NVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVD----KAGRR-PLLLISDICMAICIGALGYYFYLLK 194 (372)
Q Consensus 121 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr-~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (372)
.....|++.++.+. |++....+.+..+.-+...+..++.|+++| |+||| +.++++.+..+++..++. ..+.
T Consensus 23 ~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf---~~p~ 99 (473)
T PRK10429 23 GIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLF---SAHL 99 (473)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHH---cCCC
Confidence 34445556555554 999999999999999999999999999999 56984 555566666665544431 1110
Q ss_pred ccccccccccHHHHHHHHHHHHhhcccccccceeeeccCC-CcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 195 LDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.. ........++...++..++.....|.. ++.+|+. ++++|....+.-.....+++.+.+.
T Consensus 100 ~~---~~~~~~~~~~~~~l~~~~~t~~~ip~~-al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~ 161 (473)
T PRK10429 100 FE---GTAQYVFVCVTYILWGMTYTIMDIPFW-SLVPTLTLDKREREQLVPYPRFFASLAGFVTAG 161 (473)
T ss_pred CC---ccHHHHHHHHHHHHHHHHHHHHcchHH-hhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000111222222333334433333333 6778888 5889998888766666666555543
No 215
>KOG3764|consensus
Probab=98.58 E-value=8.1e-08 Score=85.61 Aligned_cols=235 Identities=13% Similarity=0.027 Sum_probs=137.5
Q ss_pred ceechhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHH
Q psy17630 2 VVSGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGEL 75 (372)
Q Consensus 2 ~~~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~ 75 (372)
.++|.++|+..|.+ .+..|++. +++.++-..+.++.++.+.. +.
T Consensus 205 islG~lvgPpfGGilYe~~Gk~aPFlVL---~~v~Lld~~L~l~vi~p~~~------~~--------------------- 254 (464)
T KOG3764|consen 205 ISLGVLVGPPFGGILYEFAGKSAPFLVL---AIVLLLDGALQLLVIEPTEM------DP--------------------- 254 (464)
T ss_pred HhccceecCCcccchHhhcCCcCcHHHH---HHHHHHHHHHHHheeCcccc------Cc---------------------
Confidence 46788888888777 89999999 88888866666666654321 00
Q ss_pred HHHHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHH-HHHhcCCCCCChhhHHHHHHHHHHH
Q psy17630 76 DELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKR-ILIATNSKIISPNYGQNIVGFIQVI 154 (372)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~ 154 (372)
++.++..++++++++|..+. ..........+....-..++. ..++...+..+.+.......+...+
T Consensus 255 --------~~~~~~~~~~~Ll~dP~I~~-----~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~i 321 (464)
T KOG3764|consen 255 --------DSTEQGTPMWSLLMDPYILL-----IAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAI 321 (464)
T ss_pred --------cccccCccHHHHHhCchHhh-----hhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhc
Confidence 01223456888888873222 222222212122222233333 3344464555888899999999999
Q ss_pred HHHHHHHHHhhcC--CcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeecc
Q psy17630 155 MTFFSSLLVDKAG--RRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGE 232 (372)
Q Consensus 155 ~~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 232 (372)
+..+.|.++||++ |......+++..++++....+..... ..+.........+........|.. .+..|
T Consensus 322 g~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~---------~L~vp~~~l~~~i~~~dasl~P~l-~~lvd 391 (464)
T KOG3764|consen 322 GTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA---------QLWVPNFGLGFGIGLADASLIPTL-GYLVD 391 (464)
T ss_pred cCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH---------HHhhhhHHHHHHHHHHHHHHhhhh-HHhcc
Confidence 9999999999999 53334444444444333332221000 011111111111111112222333 23333
Q ss_pred CCCcc---hhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHH
Q psy17630 233 LFTPD---VKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFA 309 (372)
Q Consensus 233 ~~p~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 309 (372)
.-..+ .-|...++......++.+++|. +.+.+.+..|+.|...+.+
T Consensus 392 ~rh~s~~~vYGsVyaIad~a~sla~a~GP~-------------------------------~gg~iv~~iGF~wl~~iig 440 (464)
T KOG3764|consen 392 PRHVSGFNVYGSVYAIADAAFSLAYAIGPT-------------------------------FGGSLVEAIGFEWLMTIIG 440 (464)
T ss_pred hhhccccceeeeHHHHHHHHHHHhhhcccc-------------------------------ccchheeehhHHHHHHHHH
Confidence 32222 4477788888888888899998 8889999999988888888
Q ss_pred HHHHHHHhhhh
Q psy17630 310 VYCIIGTFFVY 320 (372)
Q Consensus 310 ~~~~~~~~~~~ 320 (372)
...++-.-++.
T Consensus 441 ~~n~iyapvl~ 451 (464)
T KOG3764|consen 441 ILNLIYAPVLL 451 (464)
T ss_pred HHHHHHHHHHH
Confidence 77776665544
No 216
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.52 E-value=2.6e-07 Score=87.12 Aligned_cols=164 Identities=14% Similarity=0.002 Sum_probs=104.3
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHh----hcCCcchhh-HhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 126 YLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD----KAGRRPLLL-ISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 126 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
..+.+.+..|+++...+.+..+..+...+..++.|.++| |+|||+..+ .+.+..+++.+++.... +... +.
T Consensus 24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~--p~~~--~~ 99 (428)
T PF13347_consen 24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPP--PAGL--SF 99 (428)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccc--cchh--hh
Confidence 334444445999999999999999999999999999999 789766554 56666666665543210 1000 00
Q ss_pred ccccHHHHHHHHHHHHhhcccccccceeeeccCCC-cchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT-PDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
........+...++..+......|.. ++.+|+.+ +++|....+.......+|+.+...
T Consensus 100 ~~~~~~~~~~~~l~~~~~t~~~i~~~-al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~-------------------- 158 (428)
T PF13347_consen 100 TAKLVWLFVFYILFDIAYTFVQIPYN-ALIPELTPDPDERTRLSSWRMIFSMIGSLLASF-------------------- 158 (428)
T ss_pred hhHHHHHHHHHHHHHHhhhhccCchh-hcCccccccHhhhhhHHHHHHHHHHHHHHHHHH--------------------
Confidence 00111223333344445444444444 78899987 568998888887777777755544
Q ss_pred hcchhhhhhhhhhHHHHHh-------cccchhhHHHHHHHHHHHhhhheeccC
Q psy17630 280 LGSLIEFVVVKTFDDVERA-------FGTGVAFGTFAVYCIIGTFFVYFVVPE 325 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~e 325 (372)
+.+.+.+. .+|+....+.+++.++..++..+..+|
T Consensus 159 -----------~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 159 -----------LAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred -----------HhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 22222211 257777778888888888777777777
No 217
>PRK11462 putative transporter; Provisional
Probab=98.50 E-value=1.4e-06 Score=82.91 Aligned_cols=131 Identities=12% Similarity=0.061 Sum_probs=82.4
Q ss_pred HHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh----cCCcchh-hHhhHHHHHHHHHHHHHHHHhhc
Q psy17630 122 VVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRPLL-LISDICMAICIGALGYYFYLLKL 195 (372)
Q Consensus 122 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~ 195 (372)
....|+..++.+ .|+++...+.+..+.-+...+.-++.|+++|| +|||+.. +++.+..+++.+++. ..+..
T Consensus 27 ~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf---~~p~~ 103 (460)
T PRK11462 27 NVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAY---STPDL 103 (460)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHH---hCCCC
Confidence 334455555544 49999999999999999999999999999997 6876554 456566666554432 11110
Q ss_pred cccccccccHHHHHHHHHHHHhhcccccccceeeeccCCC-cchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 196 DEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT-PDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
. .........+...++..++.....|.. ++.+|+.+ +++|++..++-...+.+++.+++.
T Consensus 104 s---~~~~~~y~~~~~~~~~~~~t~~~ipy~-al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~ 164 (460)
T PRK11462 104 S---MNGKMIYAAITYTLLTLLYTVVNIPYC-ALGGVITNDPTQRISLQSWRFVLATAGGMLSTV 164 (460)
T ss_pred C---cchHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 001111222233333344443333333 66778765 788999999888888887777665
No 218
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.48 E-value=2.5e-06 Score=81.94 Aligned_cols=115 Identities=12% Similarity=-0.021 Sum_probs=69.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHH----HHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHH
Q psy17630 141 PNYGQNIVGFIQVIMTFFSSL----LVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII 216 (372)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~g~----l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (372)
..+..++..+..++..++.++ +.||++....+.+|+++.+++.+.+.......... ...+.++.+....+.+.
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~---~~vs~~~~~~~~~l~~~ 394 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDA---GIVSVNWLIASYGLQSI 394 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CccCHHHHHHHHHHHHH
Confidence 455666666666666666644 44444445667778888888877765542221111 11223334444444443
Q ss_pred hhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+- ....|....++.+..|++.||+.+|+......+++.++..
T Consensus 395 ge-~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~ 436 (500)
T PRK09584 395 GE-LMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGY 436 (500)
T ss_pred HH-HHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3445566678899999999999999887666666666655
No 219
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.44 E-value=4.6e-06 Score=78.33 Aligned_cols=65 Identities=9% Similarity=0.076 Sum_probs=49.5
Q ss_pred HHHHhhHHHH-HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCC-cchhhHhhHHHHHHHHHH
Q psy17630 122 VVIFYLKRIL-IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGR-RPLLLISDICMAICIGAL 186 (372)
Q Consensus 122 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~ 186 (372)
....+++.++ ++.|++..+.+++.....++.++++++.|+++||+|| |+++.++.++..+.....
T Consensus 20 ~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~ 86 (418)
T TIGR00889 20 SWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA 86 (418)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 3334444444 5579999999999999999999999999999999965 667776666655554443
No 220
>KOG3626|consensus
Probab=98.43 E-value=1.2e-05 Score=78.13 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=62.8
Q ss_pred hhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc-CCCCCChhhHHHHHHH-HHHHHHHHHHHHHhhc
Q psy17630 89 KKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT-NSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKA 166 (372)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~ 166 (372)
...++.+++|| +.+...+........+..+..|+|.+++.. |.++..+..+.....+ +..+|.+++|++..|+
T Consensus 382 p~s~~~ll~N~-----if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkf 456 (735)
T KOG3626|consen 382 PKSIKRLLSNP-----IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKF 456 (735)
T ss_pred HHHHHHHhcCc-----hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeee
Confidence 34677888887 555555555555555778888999888764 9999888888755444 5678889999999987
Q ss_pred CC--cchhhHhhHHHHHHHHH
Q psy17630 167 GR--RPLLLISDICMAICIGA 185 (372)
Q Consensus 167 gr--r~~~~~~~~~~~~~~~~ 185 (372)
.- |....+.++...+..+.
T Consensus 457 kl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 457 KLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 53 44444444444444443
No 221
>KOG2325|consensus
Probab=98.43 E-value=6.5e-07 Score=83.26 Aligned_cols=121 Identities=12% Similarity=-0.017 Sum_probs=85.7
Q ss_pred HHHh--cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCC-cchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHH
Q psy17630 130 ILIA--TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGR-RPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLL 206 (372)
Q Consensus 130 ~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (372)
++++ .+-+.+-.|+..+...++.+++++..|+...|.++ |+.++.+.+++.++.++.....+.... ..++
T Consensus 60 Yl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~-------~~y~ 132 (488)
T KOG2325|consen 60 YLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNG-------VKYL 132 (488)
T ss_pred hhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccc-------hHHH
Confidence 3444 45567778899999999999999999999999986 777888999999999887443222221 2344
Q ss_pred HHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 207 PVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+++...+ .+.+.+.....-.|+++..-.+.|.++++.......++..++|.
T Consensus 133 mL~~R~l--~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~ 183 (488)
T KOG2325|consen 133 MLVARIL--TGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPT 183 (488)
T ss_pred HHHHHHH--cCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHH
Confidence 4444444 34444445555688888877888888888777655566666664
No 222
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.40 E-value=2.4e-06 Score=81.39 Aligned_cols=167 Identities=11% Similarity=0.048 Sum_probs=99.0
Q ss_pred HHHhhchHHHHHhhHHHHH-hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcC-----CcchhhHhhHHHH-HHHHHH
Q psy17630 114 FLSFSGINVVIFYLKRILI-ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG-----RRPLLLISDICMA-ICIGAL 186 (372)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----rr~~~~~~~~~~~-~~~~~~ 186 (372)
+.+... .......+.+++ ++|.+..+.+.......+...+-.+ +|.++||++ ||+.++++.++.. ++...+
T Consensus 36 ~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l 113 (468)
T TIGR00788 36 FVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLL 113 (468)
T ss_pred HHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhc
Confidence 333333 334444444455 5799999998888888888888655 999999997 6666666655542 221111
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhh---HHHHHHHHHHHHHHHHHHhhcc
Q psy17630 187 GYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL---ALGVICILGSLIEFVVVKTVRH 263 (372)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~---~~~~~~~~~~~~~~~~~~~~~~ 263 (372)
.. .. +..........+..++.+ ......-.+..|..+ +.+.. ..+.......+|..+++.
T Consensus 114 ~~-----~~------~~~~~~~~~~~l~~~~~a-~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~---- 176 (468)
T TIGR00788 114 PG-----KV------SSAKVAAAFIFLAALAKA-LYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSL---- 176 (468)
T ss_pred cc-----cc------chHHHHHHHHHHHHHHHH-HHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHH----
Confidence 10 00 011122212222222222 223344477788887 44433 333444444577888887
Q ss_pred ccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCC
Q psy17630 264 RFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETK 327 (372)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~ 327 (372)
+.+.+.+..+|+..|++.+++.++..+. .++++|.+
T Consensus 177 ---------------------------l~G~l~~~~~~~~~f~~~a~l~ll~~~~-~~~~~E~~ 212 (468)
T TIGR00788 177 ---------------------------LGGPLLDKTLTRILFLITAALLLLQLFV-SNLSKERR 212 (468)
T ss_pred ---------------------------HHHHHHHhcCcchHHHHHHHHHHHHHHH-HHhccccc
Confidence 7888888889999998888887777433 44677754
No 223
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.39 E-value=4.7e-06 Score=73.85 Aligned_cols=152 Identities=13% Similarity=-0.002 Sum_probs=115.6
Q ss_pred HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
..+...++.+-+++|.+...++++++...++..+.+++..++.+|+|.++.+..++++.+++.++=...
T Consensus 29 tsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~----------- 97 (395)
T COG2807 29 TSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG----------- 97 (395)
T ss_pred hhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-----------
Confidence 355666777888899999999999999999999999999999999999999999988888877653221
Q ss_pred ccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhh
Q psy17630 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL 280 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (372)
..+..+....+.+.+.+.+..-++ ..+-+-||++ -+..++++.....+++++++.
T Consensus 98 --~~~~L~~gt~l~G~gIav~nVLLP-slIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~--------------------- 152 (395)
T COG2807 98 --GLPLLFLGTLLAGAGIAVINVLLP-SLIKRDFPKR-VGLMTGLYSTSLGAGAALAAA--------------------- 152 (395)
T ss_pred --cHHHHHHHHHHHHhhHHHHHHhhh-HHHHhhcccc-hhhHHhHHHHHHHHHHHHHhh---------------------
Confidence 123444444455555444444444 6677888854 488899999888898888887
Q ss_pred cchhhhhhhhhhHHHHHhc-ccchhhHHHHHHHHHHHhh
Q psy17630 281 GSLIEFVVVKTFDDVERAF-GTGVAFGTFAVYCIIGTFF 318 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~ 318 (372)
+...+.++. +|+....+.+..+++..+.
T Consensus 153 ----------lavpla~~~~gW~~aL~~WAl~allAl~~ 181 (395)
T COG2807 153 ----------LAVPLAQHSGGWRGALGFWALLALLALLI 181 (395)
T ss_pred ----------hhhHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 666666666 7999888888887777654
No 224
>KOG2615|consensus
Probab=98.28 E-value=1.4e-05 Score=71.24 Aligned_cols=115 Identities=9% Similarity=0.039 Sum_probs=74.2
Q ss_pred HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcC--CcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHH
Q psy17630 132 IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG--RRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVA 209 (372)
Q Consensus 132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (372)
+.+|+++.|.+.+.+..++.+.+......+..||.. -+-.+..++.++.-..+..... ........
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~------------~~~~~l~~ 357 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA------------RTPVVLYL 357 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc------------ccchhhhH
Confidence 556899999999988888888888887777777765 3334433333322222221111 11223333
Q ss_pred HHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 210 SLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
...+..+..+.....+. .++....|.++||+.+|+....+.++-+++|.
T Consensus 358 ~s~l~sf~~A~~vt~Lt-~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPl 406 (451)
T KOG2615|consen 358 GSTLKSFSTASVVTCLT-SLVHKYGPQSQRGTLNGIFRSLGALARAIGPL 406 (451)
T ss_pred HHHHHHHHHHHhhHHHH-HHHHhcCCcccchHHHHHHHHHHHHHHHhhhh
Confidence 34444444333333333 66778889999999999999999999999997
No 225
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.23 E-value=4.1e-06 Score=76.88 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=44.2
Q ss_pred hHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhh
Q psy17630 120 INVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISD 176 (372)
Q Consensus 120 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 176 (372)
......+.+..+++ .|++..+.|.+.++..+..++.+++.|.++||+|.|+-++...
T Consensus 23 ~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i 80 (412)
T PF01306_consen 23 WGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFI 80 (412)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHH
T ss_pred HHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHH
Confidence 34455666777765 6999999999999999999999999999999999777665443
No 226
>PRK09848 glucuronide transporter; Provisional
Probab=98.22 E-value=1.5e-05 Score=75.57 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=44.3
Q ss_pred HhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc----CCcchh-hHhhHHHHHHH
Q psy17630 125 FYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA----GRRPLL-LISDICMAICI 183 (372)
Q Consensus 125 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----grr~~~-~~~~~~~~~~~ 183 (372)
.|.+.++++ .|++..+.+.+..+..+...+..++.|+++||. |||+.. .++.+...+..
T Consensus 29 ~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~ 93 (448)
T PRK09848 29 LFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFS 93 (448)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHH
Confidence 344445555 499999999999999999999999999999996 666654 45544444433
No 227
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.20 E-value=1.6e-05 Score=78.54 Aligned_cols=91 Identities=11% Similarity=0.054 Sum_probs=61.9
Q ss_pred hhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHH-HHHHHHHHHHHHHhhcC
Q psy17630 90 KSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKAG 167 (372)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g 167 (372)
..+++++++|.++...+..++ .....+.+..++|.++++ +|+++.+++++.....+ +.+++.+++|+++||++
T Consensus 321 ~~~~~Ll~n~~f~~~~l~~~~-----~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~ 395 (633)
T TIGR00805 321 KIIKRLLCNPIYMLVILAQVI-----DSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFK 395 (633)
T ss_pred HHHHHHHcCcHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeec
Confidence 356778888744333332222 222356677788888875 59999998888877665 56899999999999998
Q ss_pred C--cchhhHhhHHHHHHHHH
Q psy17630 168 R--RPLLLISDICMAICIGA 185 (372)
Q Consensus 168 r--r~~~~~~~~~~~~~~~~ 185 (372)
+ |+.+.+++++..+..+.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 396 LNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 4 45566666555555444
No 228
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.19 E-value=8.8e-06 Score=56.25 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=52.5
Q ss_pred chHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhH
Q psy17630 119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDI 177 (372)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 177 (372)
+...+..|.|.+.++.|++..+++.+..+..+..+++.+++|+++||++|++..+....
T Consensus 15 ~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 15 ALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 35567888899999999999999999999999999999999999999999988776543
No 229
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.17 E-value=1.2e-06 Score=82.42 Aligned_cols=230 Identities=11% Similarity=0.066 Sum_probs=114.9
Q ss_pred echhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHH
Q psy17630 4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE 77 (372)
Q Consensus 4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 77 (372)
+|.+++..+++. +|..|.+. +.++.+..+...+..+|.++ .+.++.... .++..+.....
T Consensus 135 ~G~lv~~~l~G~l~~~~~~~~~f~i~---~~~~~l~~~~~~~~~~e~~~-----~~~~~~~~~------~~~~~~~~~~~ 200 (433)
T PF03092_consen 135 VGSLVGSLLSGPLLDSFGPQGVFLIS---AALPLLMLIVALFLLEERKV-----RPADEVFSF------GKEEVPCLFGS 200 (433)
T ss_pred HHHHHHHHhhhhhhhcCCCeEEehHH---HHHHHHHHHHHHHhhhhccc-----cccchhhcc------cccccchhhHH
Confidence 466666655544 89999998 78888866666666666221 000000000 00000000000
Q ss_pred HHHHHHHhhhhhhhHHHHHhccchhHHHHH-HHHHHHHHHhhchHH-HHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHH
Q psy17630 78 LQKELDIQAQKKKSLVEIYSNKATVKATIV-IVGLLCFLSFSGINV-VIFYLKRILIATNSKIISPNYGQNIVGFIQVIM 155 (372)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 155 (372)
-++.....++.++.+..++..+. .++..... ... .. ..++........++++...+....+..++.++|
T Consensus 201 -------~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~-~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g 271 (433)
T PF03092_consen 201 -------FREQLSELWRALQQRAIWQPILFFIFFFNLPP-SIS-SASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLG 271 (433)
T ss_pred -------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc-CCC-CccEEEEEeccccccccCHHHHHHHHHHHHHHHHHH
Confidence 11222346667777655555542 21111111 110 11 112221111112366666667777777777777
Q ss_pred HHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCC
Q psy17630 156 TFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT 235 (372)
Q Consensus 156 ~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 235 (372)
..+......+..-|+++....++..+..+.-.......+.. ..-+..+..+.--.+........+.|.. .+++|+.|
T Consensus 272 ~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~--~Gi~d~~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP 348 (433)
T PF03092_consen 272 ILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLD--LGIPDQWFALGDTILEEVIGMIAFMPSL-VLAARLCP 348 (433)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeee--eCcCCeEEEEEhHHHHHHHHHHHHHHHH-HHHHHHCC
Confidence 77777666666667776666555544333211100000000 0000112222222333333444455555 67799999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 236 PDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 236 ~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+...|+.+++...+.+++..++..
T Consensus 349 ~G~Egt~yall~s~~Nlg~~~s~~ 372 (433)
T PF03092_consen 349 KGSEGTVYALLASFSNLGSSVSST 372 (433)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988887776
No 230
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.11 E-value=0.00016 Score=65.63 Aligned_cols=117 Identities=9% Similarity=-0.037 Sum_probs=82.0
Q ss_pred hcCCCCCChhhHHHHHHHHHHHHHHHHHHHHh-hcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHH
Q psy17630 133 ATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD-KAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASL 211 (372)
Q Consensus 133 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (372)
-+|++..+...++.....+..++..+.|++.. |.++++...+++....++...+..+.... +.+.+....
T Consensus 238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~---------~~~~~~~~~ 308 (403)
T PF03209_consen 238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLG---------SPWLFRPGV 308 (403)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcc---------cchHHHHHH
Confidence 35899999999999999999999999998776 67888888888888887777665542221 245555666
Q ss_pred HHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 212 AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.+++.+.+....... ..+.|+.+++..|+.+|.....+.+...++..
T Consensus 309 ~l~G~g~G~f~vgal-s~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~ 355 (403)
T PF03209_consen 309 FLLGLGNGLFTVGAL-SLMMDLTSAGRAGLFMGAWGAAQAIARGLGTF 355 (403)
T ss_pred HHHHHhhhHHHHHHH-HHHHhCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 666655554333233 45577777788888888877666555544443
No 231
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.10 E-value=6.7e-05 Score=73.83 Aligned_cols=155 Identities=11% Similarity=0.059 Sum_probs=99.6
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHH
Q psy17630 130 ILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPV 208 (372)
Q Consensus 130 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (372)
+.+.+|++...+..+........-+..+++|+++|+ +||++++..+.++..++..++.+........ .......+
T Consensus 14 l~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~----~~~~~~~l 89 (654)
T TIGR00926 14 FLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH----PLHDLLDL 89 (654)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc----chHHHHHH
Confidence 344568777777777777777777888999999997 6999999999888888877665431100000 00111223
Q ss_pred HHHHHHHHhhcccccccceeeeccCCCcc---hhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhh
Q psy17630 209 ASLAIYIIVFSVGFGPIPGVMMGELFTPD---VKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIE 285 (372)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (372)
+.+.+..++.+..-.++. +...|.++++ .|.....+.+...++|+.+++.
T Consensus 90 ~gLaLia~G~GgiKp~vs-af~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~-------------------------- 142 (654)
T TIGR00926 90 LGLALIALGTGGIKPCVS-AFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTI-------------------------- 142 (654)
T ss_pred HHHHHHHhhccccccCch-hhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 333333334333333333 7778888654 3567888888889999988887
Q ss_pred hhhhhhhHHHHHhc-------ccchhhHHHHHHHHHHHhhhh
Q psy17630 286 FVVVKTFDDVERAF-------GTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 286 ~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~ 320 (372)
+.+.+.+.. +|...|.+.+++.+++.++..
T Consensus 143 -----i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 143 -----ITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred -----HHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 666665332 576777777776666665543
No 232
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.09 E-value=2.5e-05 Score=72.62 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=52.1
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCC-cchhhHhhHHHHHHH
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGR-RPLLLISDICMAICI 183 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~~~~~ 183 (372)
......|.+.++++.|++..+++.+.+...+..+++.+++|.++||.++ |+.+.+..++.++..
T Consensus 18 ~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~ 82 (400)
T PF03825_consen 18 YGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALAL 82 (400)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 4556778889999999999999999999999999999999999999864 555555555544443
No 233
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.07 E-value=4.2e-05 Score=71.21 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=109.0
Q ss_pred hHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhh----cCCcc-hhhHhhHHHHHHHHHHHHHHHHh
Q psy17630 120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRP-LLLISDICMAICIGALGYYFYLL 193 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~-~~~~~~~~~~~~~~~~~~~~~~~ 193 (372)
......|+..++.+. |+++..++.+..+.=+..++.-++.|.++|| +||++ -++.+.+..++...++... .
T Consensus 28 ~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~---p 104 (467)
T COG2211 28 FGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFIT---P 104 (467)
T ss_pred HHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcC---C
Confidence 344556666666665 9999999999999999999999999999997 67655 4556656666655554222 1
Q ss_pred hccccccccccHHHHHHHHHHHHhhcccccccceeeeccCC-CcchhhhHHHHHHHHHHHHHHHHHHhhccccCCccccc
Q psy17630 194 KLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF-TPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGL 272 (372)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (372)
+. +.........+...+...++.....|-. ++.+|+. .+++|....+.-..+..+++.+...
T Consensus 105 ~~---~~~~k~~ya~vtY~l~~l~YT~vniPy~-al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~------------- 167 (467)
T COG2211 105 DF---SMTGKLIYALVTYMLLGLGYTLVNIPYG-ALGPEITQDPQERASLTSWRMVFASLGGLLVAV------------- 167 (467)
T ss_pred Cc---ccCcchHHHHHHHHHHHHHHHheeCchh-hcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 10 0112233444445555556655544554 6777776 4678999888888888887777666
Q ss_pred chhhhhhhcchhhhhhhhhhHHHHH-------hcccchhhHHHHHHHHHHHhhhheeccCC
Q psy17630 273 ALGVICILGSLIEFVVVKTFDDVER-------AFGTGVAFGTFAVYCIIGTFFVYFVVPET 326 (372)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 326 (372)
..+.+.. ..||+....+++++..+..+++++-.+|+
T Consensus 168 ------------------~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER 210 (467)
T COG2211 168 ------------------LFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKER 210 (467)
T ss_pred ------------------HHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4433333 33565566666666666666666555554
No 234
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.98 E-value=1.4e-06 Score=83.81 Aligned_cols=87 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred hhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHH-HHHHHHHHHHHHHhhcC
Q psy17630 90 KSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGF-IQVIMTFFSSLLVDKAG 167 (372)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g 167 (372)
...+++++|| .++...+...........+..|.|.+++. ++.++.+++++.....+ +.++|.+++|++..|+.
T Consensus 296 ~~l~~Ll~Np-----~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~k 370 (539)
T PF03137_consen 296 KALKRLLTNP-----VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFK 370 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEec
Confidence 3456667776 44444455555555566778888888775 48888888877655544 67789999999999974
Q ss_pred --CcchhhHhhHHHHH
Q psy17630 168 --RRPLLLISDICMAI 181 (372)
Q Consensus 168 --rr~~~~~~~~~~~~ 181 (372)
.|..+.+..+...+
T Consensus 371 l~~~~~~~~~~v~~~v 386 (539)
T PF03137_consen 371 LSARGAAKFCIVVSIV 386 (539)
T ss_dssp ----------------
T ss_pred CcHHHHHHHHHHHHHH
Confidence 34444444433333
No 235
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.95 E-value=7.5e-05 Score=69.56 Aligned_cols=153 Identities=10% Similarity=0.189 Sum_probs=82.8
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCC-CCChhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSK-IISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr 169 (372)
++++..+|+ .++-..++.....++++-+..|...+-+...-+ ..--|..-++..+.+.+.++..|++-.++.|-
T Consensus 254 ~~~~~y~n~-----~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~ 328 (511)
T TIGR00806 254 ELVTIYRNP-----QLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW 328 (511)
T ss_pred HHHHHhcCc-----chhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh
Confidence 455556665 333444555666666777777777776665321 12345566677777888889999986666443
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHH
Q psy17630 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL 249 (372)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 249 (372)
.-+.++.+...-+.+++ .... ..+.|...+...++...+........ .-++.....+.-|...|+.++.
T Consensus 329 ~~l~l~v~s~~~~gll~----~m~~------t~~Iw~~Y~~yvlf~~~y~flitia~-~~iA~~L~~~~~aLvFGiNtfv 397 (511)
T TIGR00806 329 SKLLIAVVSAIQAGLVF----WMSQ------SHDIWVLYVTYVLFRGIYQFLVPIAT-FQIASSLSKELCALVFGINTFV 397 (511)
T ss_pred HHHHHHHHHHHHHHHhh----hhhc------ccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccceEEEEecHHHH
Confidence 23333322222221111 1111 12456666666666666655444333 3334444445557777777766
Q ss_pred HHHHHHHHHH
Q psy17630 250 GSLIEFVVVK 259 (372)
Q Consensus 250 ~~~~~~~~~~ 259 (372)
.-+...+...
T Consensus 398 Al~LQtilT~ 407 (511)
T TIGR00806 398 ATALKTIITA 407 (511)
T ss_pred HHHHHHheEE
Confidence 6655554443
No 236
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.94 E-value=0.00076 Score=62.87 Aligned_cols=131 Identities=16% Similarity=0.084 Sum_probs=88.5
Q ss_pred HHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccc
Q psy17630 124 IFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGL 203 (372)
Q Consensus 124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (372)
...+..|+...|+++...+..-....+.++.+.++..++.+|+|..+.-+++......+..+....++....+ .+..+
T Consensus 278 ~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~--~~~~s 355 (432)
T PF06963_consen 278 GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP--FSSIS 355 (432)
T ss_pred cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC--chhhH
Confidence 3344556666799999999999999999999999999999999999998888888877777665555443321 00011
Q ss_pred cHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHH
Q psy17630 204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVV 257 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~ 257 (372)
...++....+.-.|. -++-....-++.|..|+++||...|+-+...++...+.
T Consensus 356 ~~~l~~gi~~SR~GL-W~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 356 AYLLLGGIALSRIGL-WSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred HHHHHHHHHHHHHHH-HhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 111222222221111 12222333577999999999999999888887766543
No 237
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.79 E-value=0.00089 Score=63.69 Aligned_cols=144 Identities=17% Similarity=0.256 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHH-HHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhccc
Q psy17630 143 YGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMA-ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVG 221 (372)
Q Consensus 143 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (372)
+..++..+...+..++.|-++|+-++|+.++....+.+ ++...+.+. ... ..+...++..+...+++..
T Consensus 74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v---~~~-------~~~~~~~l~iia~v~~~~~ 143 (477)
T PF11700_consen 74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV---SPG-------QWWLALVLFIIANVGYEAS 143 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh---Ccc-------hHHHHHHHHHHHHHHHHHH
Confidence 45667788888899999999999998887765544443 333333222 111 1233333333333344333
Q ss_pred ccccceeeeccCCCcchh--------------------------hhHHHHHHHHHHHHHHHHHHhhccccCCcccccchh
Q psy17630 222 FGPIPGVMMGELFTPDVK--------------------------GLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALG 275 (372)
Q Consensus 222 ~~~~~~~~~~e~~p~~~r--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (372)
.. ...++++|+.+++.+ ++..+.....+++|+.+.-.
T Consensus 144 ~v-fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~---------------- 206 (477)
T PF11700_consen 144 NV-FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALL---------------- 206 (477)
T ss_pred HH-HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHH----------------
Confidence 22 333788899888777 88888888888887766443
Q ss_pred hhhhhcchhhhhhhhhhHHH--------HHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 276 VICILGSLIEFVVVKTFDDV--------ERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
+.-.+ .+....|..+.+.++.-++..+..++++||.++
T Consensus 207 ---------------i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 207 ---------------ISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred ---------------HHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 11111 112234666777777766666666667777644
No 238
>KOG2563|consensus
Probab=97.77 E-value=0.00027 Score=64.64 Aligned_cols=116 Identities=17% Similarity=0.066 Sum_probs=76.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccH--HHHHHHHHH
Q psy17630 137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGL--LPVASLAIY 214 (372)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 214 (372)
+....-+.+.++.+..++..+.+-|+.||+|-|...+++....+++..+=.......- +...+ +......+.
T Consensus 77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v------~~~f~~~l~~~Gq~ia 150 (480)
T KOG2563|consen 77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFV------PPLFRRPLTHTGQSIA 150 (480)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccc------cccchhhhhHHhHHHH
Confidence 5666778999999999999999999999999999999999999998877544422111 11222 222222222
Q ss_pred HHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 215 IIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 215 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
..... ....++.-...-+||+++|+.+..+..+...+|.+++-.
T Consensus 151 a~Aq~-Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l 194 (480)
T KOG2563|consen 151 AAAQP-FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL 194 (480)
T ss_pred HHhhh-HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence 22111 111222123344689999999999888887777766554
No 239
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.70 E-value=0.00031 Score=66.23 Aligned_cols=157 Identities=13% Similarity=0.074 Sum_probs=94.7
Q ss_pred hHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc-----CCcchhhHhhHHHHHHHHHHHHHHHHhhccccccc
Q psy17630 127 LKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-----GRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201 (372)
Q Consensus 127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
.+.+.+++|.++.+.........+-. ...++.|.++|-+ .||+-++++.++..++.+.++..... .
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~--------~ 83 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS--------E 83 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc--------c
Confidence 34445667888777666555544443 3457999999986 35555566666665544444332110 0
Q ss_pred cccHHHHHHHHHHHHhhcccccccceeeeccCC---CcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhh
Q psy17630 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELF---TPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVIC 278 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (372)
.+.....+...+...+.... ..+.-++..|.. |.+ |+...+.......+|+.++..
T Consensus 84 ~s~~~~~~~l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~------------------- 142 (433)
T PF03092_consen 84 SSAAIAVVLLFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSL------------------- 142 (433)
T ss_pred chhhhHHHHHHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 11122222222222222222 222335556664 333 778888888888888888887
Q ss_pred hhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccC
Q psy17630 279 ILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPE 325 (372)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e 325 (372)
+.+.+.+..+++..|.+.+.+..+..+...++.+|
T Consensus 143 ------------l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 143 ------------LSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred ------------hhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 77888888899889988888877777666656666
No 240
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.48 E-value=0.0071 Score=48.03 Aligned_cols=109 Identities=13% Similarity=0.033 Sum_probs=77.2
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHH
Q psy17630 137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII 216 (372)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (372)
+...-.....+......+++++.+.+.+++|.|+.++++.+...+-..... .. +.+..+....+.++
T Consensus 35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~----~~---------~~~~l~~~s~l~G~ 101 (156)
T PF05978_consen 35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF----YP---------NSYTLYPASALLGF 101 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----hh---------hHHHHHHHHHHHhh
Confidence 334445566677788888999999999999999999998777765444321 11 13455566666666
Q ss_pred hhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+.+..+.... .++.+...++.|++-.++.......+..++..
T Consensus 102 ~~a~lW~aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~ 143 (156)
T PF05978_consen 102 GAALLWTAQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNL 143 (156)
T ss_pred hhHHhhHhhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 7666666555 77888888888999888877776666665554
No 241
>KOG2816|consensus
Probab=97.41 E-value=0.00046 Score=65.08 Aligned_cols=113 Identities=13% Similarity=0.113 Sum_probs=83.2
Q ss_pred hcCCCCCChhhHHHHHHHHHHHHHHHHH-HHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHH
Q psy17630 133 ATNSKIISPNYGQNIVGFIQVIMTFFSS-LLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASL 211 (372)
Q Consensus 133 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (372)
.++++..+.+.+.+.......+++++.. .+...+|-|+....|+....+.....++. +..|......
T Consensus 271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~------------~~~w~~~~~~ 338 (463)
T KOG2816|consen 271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA------------TETWMMFAAG 338 (463)
T ss_pred ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh------------ccchhhhHHH
Confidence 3488888888888888888888888776 78888999998888888888887776665 1234433332
Q ss_pred HHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 212 AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
... ..+....+...+.++-..+++.+|+.+++......+.+.++|.
T Consensus 339 v~~--~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~ 384 (463)
T KOG2816|consen 339 VVV--ALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPA 384 (463)
T ss_pred HHH--HhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHH
Confidence 222 2233334444467777888999999999999999998888887
No 242
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.40 E-value=0.016 Score=55.40 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=72.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhhcCC--cch-----hhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHH
Q psy17630 140 SPNYGQNIVGFIQVIMTFFSSLLVDKAGR--RPL-----LLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA 212 (372)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~g~l~dr~gr--r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (372)
...+.++...+..++.+++.+++=.|.+| |.. +.+|+++.+++.+.+.........+ ...+.++.+....
T Consensus 309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~---~~~s~~wl~~~~~ 385 (493)
T PRK15462 309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMY---GHSSLPLMVLGLA 385 (493)
T ss_pred CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCcCHHHHHHHHH
Confidence 46677888888888888887777666633 211 5667777777776654433221111 1123334333333
Q ss_pred HHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHH-HHHHHHHHH
Q psy17630 213 IYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG-SLIEFVVVK 259 (372)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~~~~~~~~ 259 (372)
+.. ..-...+|+..++++++.|++.||..+|+..... .+++.++..
T Consensus 386 ~~t-~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~ 432 (493)
T PRK15462 386 VMG-FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGV 432 (493)
T ss_pred HHH-HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 3345567788889999999999999999986533 455555544
No 243
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.37 E-value=0.0014 Score=60.24 Aligned_cols=150 Identities=11% Similarity=0.160 Sum_probs=79.9
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhc---CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcC
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT---NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG 167 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 167 (372)
++++..+++ .++...++.....+|++.+..|...+-++. +-...--|..-+...+.+.++.+..|++..++.
T Consensus 239 ~~~~~y~~~-----~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~ 313 (412)
T PF01770_consen 239 DFKSCYSNP-----RLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWD 313 (412)
T ss_pred HHHHHhcCc-----hHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchH
Confidence 344555555 444445666666777777777777777666 222233355666777778888889999866666
Q ss_pred CcchhhHhhHHH--HHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHH
Q psy17630 168 RRPLLLISDICM--AICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGV 245 (372)
Q Consensus 168 rr~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 245 (372)
+..-+..+.+-. +.+.+++... .+.|.......++...+........ .-++.....+.-+...|+
T Consensus 314 ~~~~l~l~~~S~l~a~~L~lm~~t------------~~Iwv~Y~~yIif~~~y~fliTiA~-~qIA~~l~~e~yaLVFGi 380 (412)
T PF01770_consen 314 RWGELALGVFSLLQAGLLFLMSFT------------GNIWVCYAGYIIFRSLYMFLITIAS-FQIAKNLSEERYALVFGI 380 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccceeeeeee
Confidence 654444333222 2222222221 1244445555555444443333222 222333334444777777
Q ss_pred HHHHHHHHHHHHH
Q psy17630 246 ICILGSLIEFVVV 258 (372)
Q Consensus 246 ~~~~~~~~~~~~~ 258 (372)
.++...+...+..
T Consensus 381 Ntf~Al~LQtilT 393 (412)
T PF01770_consen 381 NTFVALVLQTILT 393 (412)
T ss_pred HHHHHHHHHHheE
Confidence 6666555544433
No 244
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.36 E-value=0.0015 Score=59.52 Aligned_cols=126 Identities=9% Similarity=0.047 Sum_probs=72.9
Q ss_pred HhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcC-----CcchhhH-hhHHHHHHHHHHHHHHHHhhccccccccccH
Q psy17630 132 IATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG-----RRPLLLI-SDICMAICIGALGYYFYLLKLDEKLVDGLGL 205 (372)
Q Consensus 132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----rr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (372)
.|++.+..-.+.+.....+. .+..+..|+.||+.+ ||..+++ |...+..+..+...............+...+
T Consensus 8 vEL~vpA~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~ 86 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW 86 (403)
T ss_pred HHhccHHHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence 34454444444444444433 346889999999998 7766554 5555555555554444443331011112222
Q ss_pred HH--H--HHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 206 LP--V--ASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 206 ~~--~--~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.. . ..+.+++.+.+..-.+.. ++++|..|+++|++..++.....-+|..++..
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~l-ALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai 143 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFL-ALLADLAPEERRPRVVAIVWVMLIVGIIVSAI 143 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHH-HHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 22 2 223333333333333333 78899999999999999998887777777776
No 245
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.30 E-value=4.6e-05 Score=73.46 Aligned_cols=137 Identities=10% Similarity=0.020 Sum_probs=0.8
Q ss_pred HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcc--cc
Q psy17630 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD--EK 198 (372)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 198 (372)
.......+.+.++++++..+.+++.+..-++.++..++..++.+|..|-+.+-+|.++++++.+++++-.+..... +.
T Consensus 20 g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~ 99 (539)
T PF03137_consen 20 GYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEE 99 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccc
Confidence 3445556677788899999999999999999999999999999998888888889999999888876643322211 00
Q ss_pred --------------------------------ccccccHHHHHHHHHHHHhhccc---ccccceeeeccCCCcchhhhHH
Q psy17630 199 --------------------------------LVDGLGLLPVASLAIYIIVFSVG---FGPIPGVMMGELFTPDVKGLAL 243 (372)
Q Consensus 199 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~e~~p~~~r~~~~ 243 (372)
......+..+..+.+.....+.+ ..++..+|+-|..+++.-+...
T Consensus 100 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYi 179 (539)
T PF03137_consen 100 ASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYI 179 (539)
T ss_dssp ----------------------------------------------------SSS-------------------------
T ss_pred ccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccch
Confidence 00111111122222222222222 3355668999999988888888
Q ss_pred HHHHHHHHHHHHHH
Q psy17630 244 GVICILGSLIEFVV 257 (372)
Q Consensus 244 ~~~~~~~~~~~~~~ 257 (372)
|+.+....+|.+++
T Consensus 180 Gi~~~~~~lGPa~G 193 (539)
T PF03137_consen 180 GILYAMSILGPALG 193 (539)
T ss_dssp --------------
T ss_pred hhhhHHhhccHHHH
Confidence 88777666555443
No 246
>KOG3626|consensus
Probab=97.24 E-value=0.0046 Score=60.72 Aligned_cols=153 Identities=9% Similarity=0.022 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH
Q psy17630 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG 184 (372)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 184 (372)
++....+..+.+......+......+-+.++++..+.+++....-++..+...+..+..-|..|-+.+-+|+++++++.+
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 44444444444443334444455566677799999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcc------------cc---------------------cc---ccccHHHHHHHHHHHHhhcc---ccccc
Q psy17630 185 ALGYYFYLLKLD------------EK---------------------LV---DGLGLLPVASLAIYIIVFSV---GFGPI 225 (372)
Q Consensus 185 ~~~~~~~~~~~~------------~~---------------------~~---~~~~~~~~~~~~~~~~~~~~---~~~~~ 225 (372)
+.++--+..... .+ .. ....+...+.+++.....++ ...++
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 876652221110 00 00 11121122222222222222 33455
Q ss_pred ceeeeccCCCcchhhhHHHHHHHHHHHHHHHH
Q psy17630 226 PGVMMGELFTPDVKGLALGVICILGSLIEFVV 257 (372)
Q Consensus 226 ~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~ 257 (372)
...|+-|...++.-....|+.+....+|.+++
T Consensus 258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiG 289 (735)
T KOG3626|consen 258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIG 289 (735)
T ss_pred CCccccccccccCCcHHHHHHHHHHHhhhHHH
Confidence 56788888888877888888877666655544
No 247
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.15 E-value=0.02 Score=54.20 Aligned_cols=120 Identities=7% Similarity=-0.063 Sum_probs=74.9
Q ss_pred CChhhHHHHHHHHHHHH-HHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcc-ccc--------ccc------
Q psy17630 139 ISPNYGQNIVGFIQVIM-TFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD-EKL--------VDG------ 202 (372)
Q Consensus 139 ~~~~~~~~~~~~~~~~~-~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~------ 202 (372)
+...++-+...+...+. .++.+++++|++|++.+-..........+++++..+...+. +++ ...
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 44555555554544444 78899999999999998877777776666665554322211 000 000
Q ss_pred ----ccHHHHHHHHHHHHhhc-ccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 203 ----LGLLPVASLAIYIIVFS-VGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 203 ----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
..|... .+.+..-.++ ...+.+.|.+++|.+..++-.+-.++....++++..+++.
T Consensus 123 i~~~~~W~~~-~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~ 183 (472)
T TIGR00769 123 IAILRIWSFA-LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGR 183 (472)
T ss_pred HHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 1111111222 2233367889999999999999999999999999999887
No 248
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.14 E-value=0.12 Score=48.46 Aligned_cols=118 Identities=14% Similarity=0.036 Sum_probs=72.8
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhcCCc--c-----hhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHH
Q psy17630 139 ISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR--P-----LLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASL 211 (372)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (372)
....+.++...+.-++.+++..++-.+.+++ . -+-+++++++.+.+++......... +....+.++.+...
T Consensus 324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~--~~~~~s~~~lil~y 401 (498)
T COG3104 324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGG--PSGLVSVWWLVLSY 401 (498)
T ss_pred cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCcCHHHHHHHH
Confidence 4566788888888888888888887775544 1 1345555555555554433122211 12223344444444
Q ss_pred HHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 212 AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.+. ...-...+|+...++....|+...+..++........+..+...
T Consensus 402 ~l~-s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~ 448 (498)
T COG3104 402 VLQ-SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQ 448 (498)
T ss_pred HHH-HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhce
Confidence 333 33345667777788888999998898888887777666666655
No 249
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.08 E-value=0.0034 Score=43.92 Aligned_cols=70 Identities=10% Similarity=0.002 Sum_probs=61.7
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHH
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYY 189 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 189 (372)
-+.+...+|.+.++.+++..+.+++.+...++..+|.+...++.++.++++.+..+.+...+..+.+++.
T Consensus 8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778899999999999999999999999999999999999999888888888888888887777655
No 250
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=97.00 E-value=0.015 Score=51.13 Aligned_cols=126 Identities=17% Similarity=0.107 Sum_probs=73.5
Q ss_pred HHHhhHHHHHhcCCCC--CChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcccccc
Q psy17630 123 VIFYLKRILIATNSKI--ISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200 (372)
Q Consensus 123 ~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (372)
.....+.+..+.+.+. ...++......+...++.++.|.++||+|||+.+..+.....++.+...+...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--------- 91 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN--------- 91 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc---------
Confidence 3445555555554333 35677888888888888899999999999997777776553333233222210
Q ss_pred ccccHHHHHHHHHHHHhhcccccccceeeeccCCCc-chhhhHHHHHHH-HHHHHHHHHHH
Q psy17630 201 DGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTP-DVKGLALGVICI-LGSLIEFVVVK 259 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~-~~~~~~~~~~~ 259 (372)
...+.........+.+.+ ...+....++.|.+|. +.|+...+.... ....+..+++.
T Consensus 92 -~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
T COG0477 92 -VGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPL 150 (338)
T ss_pred -chHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012222333332222322 2334555788899887 567777777666 34444444443
No 251
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=96.98 E-value=0.021 Score=52.62 Aligned_cols=112 Identities=10% Similarity=-0.060 Sum_probs=63.8
Q ss_pred cCCCCCChhhHHHH-HHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHH
Q psy17630 134 TNSKIISPNYGQNI-VGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA 212 (372)
Q Consensus 134 ~g~~~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (372)
.|++..+..--..+ ..-......+....+.|..+.|++++++.+...+...++.+. .+...+-+.-.
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~------------~sv~~mq~~q~ 102 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG------------TSVLAMQLMQF 102 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH------------CcHHHHHHHHH
Confidence 47776665433333 333455667788899999999999999877766666554333 11223333344
Q ss_pred HHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 213 IYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.++...+. -...++|+--..|+++-.++.+.......+|.+++..
T Consensus 103 ~yg~~~a~--evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~ 147 (412)
T PF01770_consen 103 FYGLATAA--EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSL 147 (412)
T ss_pred HHHHHHHH--HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444332 2223344444556665556666666555555555554
No 252
>KOG2325|consensus
Probab=96.70 E-value=0.0018 Score=60.70 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=42.6
Q ss_pred eeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHH
Q psy17630 228 VMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGT 307 (372)
Q Consensus 228 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 307 (372)
+.-+|+..++.+++..++....+..+..++|. +........|.+....+
T Consensus 411 tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~-------------------------------~~t~~~~~~g~~~v~~~ 459 (488)
T KOG2325|consen 411 TLYSKILGPRDQGTMQGVFSISGSIARVVGPI-------------------------------FSTAIFTLSGPRPVWII 459 (488)
T ss_pred HHHHHHhCCccccceeEEEEeccchhhhhhHH-------------------------------HHhhhHHhcCccHHHHH
Confidence 45588899999999999998888888888887 66677777888765554
Q ss_pred HHHHHHHH
Q psy17630 308 FAVYCIIG 315 (372)
Q Consensus 308 ~~~~~~~~ 315 (372)
.+...++.
T Consensus 460 ~~~~~l~~ 467 (488)
T KOG2325|consen 460 LLCLLLVV 467 (488)
T ss_pred HHHHHHHH
Confidence 44443333
No 253
>KOG0637|consensus
Probab=96.66 E-value=0.0019 Score=59.43 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh----cCCcchhhHh-hH
Q psy17630 103 KATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK----AGRRPLLLIS-DI 177 (372)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~~~~~~-~~ 177 (372)
+.++......+..+++ ...-..|.+.++++.|.+....+..-...-+.+.+..++.|..+|| ||||+.++.. ..
T Consensus 32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 3344444455555544 5566778888999999988888888888888999999999999997 7888776654 44
Q ss_pred HHHHHHHHHHHHHHHhhccccccc--cccH---HHHHHHHHHHHhhcccccccceeeeccCCCcchhhh-HHHHHHHHHH
Q psy17630 178 CMAICIGALGYYFYLLKLDEKLVD--GLGL---LPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGL-ALGVICILGS 251 (372)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~-~~~~~~~~~~ 251 (372)
...++.++++........-++... .... ..++.+.+.-+......+|.= +++.|+...+.+-+ +++....+..
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r-a~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR-ALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH-HHHHHhccChhhhhccchhHHHHHH
Confidence 445555555544333321111111 1111 122222223233334445555 78899987776666 8888777777
Q ss_pred HHHHHH
Q psy17630 252 LIEFVV 257 (372)
Q Consensus 252 ~~~~~~ 257 (372)
+|+.++
T Consensus 190 vGnvLG 195 (498)
T KOG0637|consen 190 VGNVLG 195 (498)
T ss_pred hcceee
Confidence 766544
No 254
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.42 E-value=0.076 Score=48.98 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.|..++..+..+...+..+.... ..+.|-.|+++|-.+++.....-.+|-.++..
T Consensus 335 i~ivf~lif~eGLlGGa~YVNtF-~~I~~~~~~~~REFslg~vsvsds~GI~lAgl 389 (402)
T PF02487_consen 335 IWIVFVLIFYEGLLGGASYVNTF-YRISEEVPPEDREFSLGAVSVSDSLGILLAGL 389 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45555555555555555555444 44566778899999999888777776666554
No 255
>KOG3098|consensus
Probab=96.17 E-value=0.066 Score=50.27 Aligned_cols=116 Identities=19% Similarity=0.092 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh---cCCcchhhHhhHHHHHHHHHHHHHHHHhhcccc----c--cccccHHHHHHHH
Q psy17630 142 NYGQNIVGFIQVIMTFFSSLLVDK---AGRRPLLLISDICMAICIGALGYYFYLLKLDEK----L--VDGLGLLPVASLA 212 (372)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~g~l~dr---~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~ 212 (372)
+......+++.+++....+.+.+| +||++++.++..+..+..++.........+-.+ . ........++...
T Consensus 282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence 344556677778888888888765 789999888888777776665443322221000 0 0111223333333
Q ss_pred HHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 213 IYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+.+.+-+. +....+.++.+.+ ++.|..+.++.-+-..+.+.+.-.
T Consensus 362 l~G~~D~~-~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f 406 (461)
T KOG3098|consen 362 LLGFGDAC-FNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFF 406 (461)
T ss_pred HHhhHHHH-HHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhh
Confidence 44333332 3344456777778 577888888877766666655443
No 256
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=96.09 E-value=0.048 Score=50.05 Aligned_cols=106 Identities=21% Similarity=0.196 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHH-HHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcc
Q psy17630 142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICM-AICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV 220 (372)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (372)
+...++..+...+-+++-|.++|+.|+|+..+..+... .++...+.+. .. .+..+..++...+...++..
T Consensus 61 gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i---~~------~s~~~~~l~~~il~~i~~~~ 131 (438)
T COG2270 61 GYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFI---PP------GSYLLLLLLFLILASIGFEF 131 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHh---CC------CchHHHHHHHHHHHHHhcch
Confidence 34566677777888899999999999877665443333 3333333222 11 01233333333444444333
Q ss_pred cccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHH
Q psy17630 221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVV 257 (372)
Q Consensus 221 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~ 257 (372)
. .....+++.++.+++.-++..+.....+++++.+.
T Consensus 132 s-~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~ 167 (438)
T COG2270 132 S-NVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVIL 167 (438)
T ss_pred h-heehhhHhhhhcCccccCcccccccccccccchHH
Confidence 2 23334788888887776777777666666666543
No 257
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=95.66 E-value=0.28 Score=46.82 Aligned_cols=109 Identities=12% Similarity=0.068 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcc-cccc----------ccccHHH-------HHHHH
Q psy17630 151 IQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD-EKLV----------DGLGLLP-------VASLA 212 (372)
Q Consensus 151 ~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~-------~~~~~ 212 (372)
+.++...+..+++++++|.+++.+..........++++..++..+. +++. ..-.+.. ..++.
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 4556677889999999999988877777666666666654332210 0000 0000000 00011
Q ss_pred HHHHhh-cccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 213 IYIIVF-SVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 213 ~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+..=.. ....+.+.|.+.+|.++.++-.+-.++....++++..+++.
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~ 198 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQ 198 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 12223355788999999999899999999999999988887
No 258
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=95.59 E-value=0.021 Score=51.30 Aligned_cols=53 Identities=11% Similarity=-0.042 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 206 LPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
..++..++.+.+.+....... .+++++.|++.+++.+++...+..+|..++|.
T Consensus 12 ~~l~~~f~~g~G~~~lq~~~n-~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~ 64 (310)
T TIGR01272 12 LFLGALFVLASGLTILQVAAN-PYVSILGPIETAASRLALTQAFNKLGTTVAPL 64 (310)
T ss_pred HHHHHHHHHHhhHHHHHhhHH-HHHHHHCCcchHHHHHHHHHHHhhhHHHHHHH
Confidence 334444455455444434343 88899999999999999999999999999998
No 259
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=95.46 E-value=0.061 Score=49.71 Aligned_cols=116 Identities=11% Similarity=-0.009 Sum_probs=73.2
Q ss_pred chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcc---hhhhHHHHH
Q psy17630 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPD---VKGLALGVI 246 (372)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~ 246 (372)
++++++.++..++.+++.++....... .........+.+.+...+.+..=..+. .+.+|.++++ .|.......
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~---~~~~~~~~~~gL~lia~G~G~~K~ni~-~~~~dq~~~~~~~~~~~~F~~f 77 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLP---SGIQLGLFYIGLALIAVGTGGIKPNIS-PFGADQYDEDDDSRRDSFFNWF 77 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC---------CHHHHHHHHHHHHHHCCHHHHH-HHHHHCSSTTTTTHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhh---hhHHHHHHHHHHHHHHhccccccccHH-HHHHHHhcccchhhhhhhHHHH
Confidence 456777778888777755543222210 011123444545555555554333444 7888888765 356678888
Q ss_pred HHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630 247 CILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 320 (372)
+...++|+.++.. ..+++.+..||...|.+.++..+++.+..+
T Consensus 78 Y~~in~G~~~~~~-------------------------------~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 78 YWGINIGSLFSPT-------------------------------LVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHHHHH-------------------------------CCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHhhcc-------------------------------cchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999999988 888888999998888887777776666544
No 260
>KOG3810|consensus
Probab=95.45 E-value=0.52 Score=42.35 Aligned_cols=152 Identities=13% Similarity=0.153 Sum_probs=81.6
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCC--CCChhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSK--IISPNYGQNIVGFIQVIMTFFSSLLVDKAGR 168 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr 168 (372)
++.+..++| .++.-.++.....+|++-+.+|...+-++..-. ..--|..=++..+.++++.+..|.+--.+.|
T Consensus 226 ~l~~~y~np-----~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r 300 (433)
T KOG3810|consen 226 DLQECYSNP-----RLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNR 300 (433)
T ss_pred HHHHHhcCc-----hhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccch
Confidence 455666666 333334555666667777777776666655311 1112334456677778888899998877777
Q ss_pred cchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHH
Q psy17630 169 RPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICI 248 (372)
Q Consensus 169 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 248 (372)
..-++++..-...+.++ ++.... .+.|...+...++...+........ .-+++....+.-|...|+..+
T Consensus 301 ~g~~ll~~~s~~~agll----f~m~~t------~~Iw~~Ya~yvlfr~~y~l~itiA~-~~iA~nL~~e~~gLvFGiNTF 369 (433)
T KOG3810|consen 301 WGDLLLAVGSAVQAGLL----FIMAQT------QHIWVCYAGYVLFRVIYQLTITIAT-FQIARNLSSELFGLVFGINTF 369 (433)
T ss_pred hhHHHHHHHHHHhhhhh----hhhhcc------cceehhhhhHHHHHhhHhhhhhHHH-HHHHHhhhhhhheeeeehHHH
Confidence 64444333221111111 222221 2355555555555555554444333 233444455556777777766
Q ss_pred HHHHHHHHHH
Q psy17630 249 LGSLIEFVVV 258 (372)
Q Consensus 249 ~~~~~~~~~~ 258 (372)
..-+...+..
T Consensus 370 vAl~lQsilT 379 (433)
T KOG3810|consen 370 VALILQSILT 379 (433)
T ss_pred HHHHHHHhhe
Confidence 6555544443
No 261
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=95.43 E-value=0.71 Score=43.36 Aligned_cols=152 Identities=11% Similarity=0.038 Sum_probs=80.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHH---HHHHh
Q psy17630 141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA---IYIIV 217 (372)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 217 (372)
.+.....-.+..++.++..|...||..|.+....+.+..-++..+....+............+.+....++. ..+..
T Consensus 40 ~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i 119 (432)
T PF06963_consen 40 VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAI 119 (432)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHH
Confidence 444555667777888888999999999999887777666544444333322221110100001122111111 11111
Q ss_pred hcccccccceeeeccC----C--CcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhh
Q psy17630 218 FSVGFGPIPGVMMGEL----F--TPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKT 291 (372)
Q Consensus 218 ~~~~~~~~~~~~~~e~----~--p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (372)
..........+.--|+ . +++.....++...-+=.+...++|. .
T Consensus 120 ~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl-------------------------------~ 168 (432)
T PF06963_consen 120 ERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPL-------------------------------F 168 (432)
T ss_pred HHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH-------------------------------H
Confidence 1111111111222222 2 2334455666665555667888888 7
Q ss_pred hHHHHHhcccchhhHHHHHHHHHHHhhhheec
Q psy17630 292 FDDVERAFGTGVAFGTFAVYCIIGTFFVYFVV 323 (372)
Q Consensus 292 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 323 (372)
.+.+.+..+......+.++..+++..+=++++
T Consensus 169 vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l 200 (432)
T PF06963_consen 169 VGLLMTFASPVIAAIFIAGWNLASVFVEYFLL 200 (432)
T ss_pred HHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88787777777677777777777766554443
No 262
>KOG4686|consensus
Probab=95.35 E-value=0.0042 Score=53.69 Aligned_cols=119 Identities=13% Similarity=0.038 Sum_probs=77.9
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHH
Q psy17630 129 RILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLP 207 (372)
Q Consensus 129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (372)
++-.+.+....+..++.++.+.-.++-++++|++.|| +|-|...++-+....++-++++.-.+.+ ..|..
T Consensus 69 ~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~---------aFw~M 139 (459)
T KOG4686|consen 69 DFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISH---------AFWTM 139 (459)
T ss_pred hhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHH---------HHHHH
Confidence 3334446666677788888888889999999999997 5666555555555555555543321111 24555
Q ss_pred HHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHH
Q psy17630 208 VASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVV 257 (372)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~ 257 (372)
....++++++.- ........|..-.|..++-+..+|+......+|+.+-
T Consensus 140 ~~GRF~FGIGgE-SlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvN 188 (459)
T KOG4686|consen 140 LAGRFLFGIGGE-SLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVN 188 (459)
T ss_pred HhhheeeccCch-hhhhhhcceeEEEecCccccchhhHHHHHHHhhceee
Confidence 666666655532 2333444777888888888999999888888776543
No 263
>KOG3762|consensus
Probab=95.27 E-value=0.029 Score=52.97 Aligned_cols=62 Identities=10% Similarity=0.137 Sum_probs=52.4
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHH
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~ 181 (372)
...+...++.+.+++|+++.+.+.+...--+..+++.+++|+++||+.+|+.++++..+..+
T Consensus 27 ~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v 88 (618)
T KOG3762|consen 27 FGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSV 88 (618)
T ss_pred ccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 34567788889999999999999999999999999999999999999887776666544433
No 264
>KOG1237|consensus
Probab=95.10 E-value=1.2 Score=43.58 Aligned_cols=163 Identities=15% Similarity=0.120 Sum_probs=92.9
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHhhHHHHHHHHHHHHHHHHhhcc--------
Q psy17630 126 YLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYLLKLD-------- 196 (372)
Q Consensus 126 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 196 (372)
...++...++.+...+.-.............+++++++|- +||-+++.++.++..++..++..........
T Consensus 60 lv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~ 139 (571)
T KOG1237|consen 60 LVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKP 139 (571)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCC
Confidence 3334444556555555555666666667778899999997 4898999998888888766665544333211
Q ss_pred ccc--ccccc-HHHHHHHHHHHHhhc-ccccccceeeeccCCCcc----hh--hhHHHHHHHHHHHHHHHHHHhhccccC
Q psy17630 197 EKL--VDGLG-LLPVASLAIYIIVFS-VGFGPIPGVMMGELFTPD----VK--GLALGVICILGSLIEFVVVKTVRHRFT 266 (372)
Q Consensus 197 ~~~--~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~----~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (372)
... ..... -..++...+.....+ .+.-+....+-+|-++.. .+ ..-+...+...+.+..++-.
T Consensus 140 ~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t------- 212 (571)
T KOG1237|consen 140 GGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQT------- 212 (571)
T ss_pred CCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHH-------
Confidence 000 01111 111222222222222 233344446778888722 22 34556666666766666655
Q ss_pred CcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhh
Q psy17630 267 PDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFV 319 (372)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 319 (372)
+..+..+..+|...|.+..+..+++.++.
T Consensus 213 ------------------------~~vyiq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 213 ------------------------VLVYIQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred ------------------------HHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence 55556677888887777766665555443
No 265
>KOG3098|consensus
Probab=95.01 E-value=0.48 Score=44.64 Aligned_cols=109 Identities=14% Similarity=0.070 Sum_probs=82.3
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHH
Q psy17630 137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII 216 (372)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (372)
++..-...+++......+++++++.+.|+.|.|..+.++........+.+... +.+.....-++.++
T Consensus 48 ~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-------------N~y~~yfssallG~ 114 (461)
T KOG3098|consen 48 SAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-------------NSYYLYFSSALLGF 114 (461)
T ss_pred CCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-------------chHHHHHHHHHhhh
Confidence 33333445788888999999999999999999999999987777666554332 35667777778888
Q ss_pred hhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 217 VFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 217 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+.+..+.... .|++|..+++.+.+-.++.-.....+.++++.
T Consensus 115 Gaallw~GqG-~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi 156 (461)
T KOG3098|consen 115 GAALLWTGQG-GYLTSNSTRETIERNISIFWAIGQSSLIIGGI 156 (461)
T ss_pred hHHheecccc-eehhhcCChhhHHHHHHHHHHHHHHHHHhhhH
Confidence 8776666555 88999999888888888877777666666654
No 266
>KOG4332|consensus
Probab=94.87 E-value=0.035 Score=47.72 Aligned_cols=59 Identities=12% Similarity=-0.081 Sum_probs=45.6
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH
Q psy17630 126 YLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG 184 (372)
Q Consensus 126 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 184 (372)
|.-++.+.+|+...+++.+........++...+.|-++||-|||+..+.-++...++++
T Consensus 59 YvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi 117 (454)
T KOG4332|consen 59 YVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI 117 (454)
T ss_pred eeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH
Confidence 33334566788888999888888888888889999999999999987766665555544
No 267
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=94.86 E-value=0.55 Score=40.37 Aligned_cols=14 Identities=7% Similarity=0.185 Sum_probs=10.8
Q ss_pred hhHHHHHHhhhhHHHHH
Q psy17630 16 YEDYTIICLSCLVIPVL 32 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i 32 (372)
||+++.+. +++..+
T Consensus 40 W~~I~si~---~lL~~I 53 (267)
T PF07672_consen 40 WQWILSIF---ILLIFI 53 (267)
T ss_pred HHHHHHHH---HHHHHH
Confidence 99999999 555544
No 268
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=94.76 E-value=0.083 Score=49.80 Aligned_cols=55 Identities=7% Similarity=0.038 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.+..++...+++...+. .+.....+.++..++++|..+-.+...+-.+|-.++..
T Consensus 372 d~~~~~~~~l~gltnGy-~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~ 426 (437)
T TIGR00939 372 DAYFIILMLLFGFSNGY-LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAV 426 (437)
T ss_pred cHHHHHHHHHHHHhhhH-HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445554444332 23344466778888888877777766666555555554
No 269
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=94.71 E-value=0.25 Score=45.69 Aligned_cols=45 Identities=7% Similarity=0.025 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHH
Q psy17630 144 GQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGY 188 (372)
Q Consensus 144 ~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~ 188 (372)
+...-.+-.++..+++.++.+|+.-+.-......++.+++++.++
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~ 108 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAF 108 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheee
Confidence 444445566677778889999886544455555566666665544
No 270
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=94.45 E-value=0.35 Score=45.60 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=23.8
Q ss_pred eeeccCCCcchhhhHHHHHHHHHHHHHHH
Q psy17630 228 VMMGELFTPDVKGLALGVICILGSLIEFV 256 (372)
Q Consensus 228 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~ 256 (372)
++-+.+.++..-|+.+.+.|...++|+--
T Consensus 428 AFharISDP~IGGTYMTLLNTvSNLGGtW 456 (544)
T PF13000_consen 428 AFHARISDPAIGGTYMTLLNTVSNLGGTW 456 (544)
T ss_pred HHHhhccCcccchHHHHHHHHHHhcCCCc
Confidence 55677788899999999999998888743
No 271
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=92.85 E-value=0.024 Score=50.89 Aligned_cols=113 Identities=12% Similarity=-0.002 Sum_probs=2.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHhhHHHHHHHHHHHHHHHHhhcc-ccccccccHHHHHHHHHHHHhhccc
Q psy17630 144 GQNIVGFIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICIGALGYYFYLLKLD-EKLVDGLGLLPVASLAIYIIVFSVG 221 (372)
Q Consensus 144 ~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (372)
....+.++..+|..+.++.--+- .+|.+. +..+.=.+...++.......... .+..-.+.+..++...+++...| .
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNG-y 264 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNG-Y 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccc-h
Confidence 45567888889988887642111 233333 22222222222211111110000 00001122333333444433333 2
Q ss_pred ccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHH
Q psy17630 222 FGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVV 258 (372)
Q Consensus 222 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 258 (372)
.......+.++..++++|..+-.+....-..|-.+|.
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs 301 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGS 301 (309)
T ss_dssp --HHHH-------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345556778888888886665555555444444433
No 272
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=92.57 E-value=5.6 Score=37.71 Aligned_cols=123 Identities=10% Similarity=-0.083 Sum_probs=74.8
Q ss_pred CCCChhhHHHHHHH-HHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhcc-ccc----------cc-c-
Q psy17630 137 KIISPNYGQNIVGF-IQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLD-EKL----------VD-G- 202 (372)
Q Consensus 137 ~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~-~- 202 (372)
+++...++=...-+ ++++..++..++.++..|.+++...+.....+.+++++..++..+. +++ .+ .
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 44455555444444 6678888999999999999998887777777777777665533211 000 00 0
Q ss_pred -------ccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 203 -------LGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 203 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+.|.......+.-.-.+...+-+.|..+.|.+..++-.+-.++.+..++++..+++.
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~ 202 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGE 202 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 002111111111111122233355677889998888888899988888888777766
No 273
>KOG3574|consensus
Probab=92.48 E-value=2 Score=39.33 Aligned_cols=66 Identities=17% Similarity=0.062 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHh-----hcCCcchhhH
Q psy17630 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD-----KAGRRPLLLI 174 (372)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~grr~~~~~ 174 (372)
.....+++. .+..- .......|.+++.-|.|-++.+.......= .---+++..+.| |+|||+.-++
T Consensus 33 illLl~LYl-lQGiP-~GL~~~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 33 ILLLLFLYL-LQGIP-LGLIGAIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred HHHHHHHHH-HcCCc-hhHhhhhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceee
Confidence 333333443 33433 344448888888777776665554433221 123467888888 9999987554
No 274
>KOG0637|consensus
Probab=91.63 E-value=1.4 Score=41.19 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhH
Q psy17630 143 YGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDI 177 (372)
Q Consensus 143 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 177 (372)
+-..+..+...+.+...-++++|+|-|+.+..+..
T Consensus 336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~ 370 (498)
T KOG0637|consen 336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVN 370 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhH
Confidence 34566777788888999999999995554444433
No 275
>PRK03612 spermidine synthase; Provisional
Probab=91.21 E-value=4.2 Score=39.47 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=20.9
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q psy17630 135 NSKIISPNYGQNIVGFIQVIMTFFSSLLVD 164 (372)
Q Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 164 (372)
|.+....+.+.+.+.++..+|+.+++++.+
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~ 75 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLR 75 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 655556666777777777788877777653
No 276
>KOG1479|consensus
Probab=89.39 E-value=1.5 Score=40.39 Aligned_cols=50 Identities=6% Similarity=-0.146 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHH
Q psy17630 205 LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEF 255 (372)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~ 255 (372)
++.+....+++...+ -.+.+...+.++..|++++-.+-.+...+-..|-+
T Consensus 344 ~~~~~l~~~lglsnG-Yltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~ 393 (406)
T KOG1479|consen 344 GWFIFLMSLLGLSNG-YLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLA 393 (406)
T ss_pred hHHHHHHHHHHhccc-hHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 444444444433332 23455557778888888776655555444433333
No 277
>KOG1479|consensus
Probab=88.90 E-value=19 Score=33.48 Aligned_cols=44 Identities=9% Similarity=0.014 Sum_probs=21.1
Q ss_pred hHHHHHhhHHHHHhc-CCCCCChhhHHHHHHHHHHH----HHHHHHHHHhh
Q psy17630 120 INVVIFYLKRILIAT-NSKIISPNYGQNIVGFIQVI----MTFFSSLLVDK 165 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~----~~~~~g~l~dr 165 (372)
.+.+..-.+++.+++ +.+. ....+....+.+.+ ....-.++.-|
T Consensus 34 WN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~ 82 (406)
T KOG1479|consen 34 WNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTR 82 (406)
T ss_pred hHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666665 3222 33333334444333 33444444555
No 278
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=88.45 E-value=3.9 Score=38.87 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=26.0
Q ss_pred HhhHHHHHh--cCCCCCChhhHHHHHHHHHHHHHHHHHHHH-----hhcCCcchhhHh
Q psy17630 125 FYLKRILIA--TNSKIISPNYGQNIVGFIQVIMTFFSSLLV-----DKAGRRPLLLIS 175 (372)
Q Consensus 125 ~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~-----dr~grr~~~~~~ 175 (372)
.-.|.++++ .+.+-.+.+..+....=. ---+++.++. .|+|||+.-++-
T Consensus 21 gsiPflL~~~~~~~sy~q~~~fSla~~Pf--SlKlLWaPiVDs~y~~~~GRRKSWiiP 76 (544)
T PF13000_consen 21 GSIPFLLQSMAKKVSYSQQAIFSLASYPF--SLKLLWAPIVDSVYSKRIGRRKSWIIP 76 (544)
T ss_pred ccchhhhccccCCCChhHheeeeeeechh--HHHHhhhhhhhhhcccccCCcchhhhH
Confidence 456777777 355555554433221110 0123445444 579999986653
No 279
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=86.45 E-value=19 Score=34.18 Aligned_cols=31 Identities=10% Similarity=0.037 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcchhhHhhH
Q psy17630 147 IVGFIQVIMTFFSSLLVDKAGRRPLLLISDI 177 (372)
Q Consensus 147 ~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 177 (372)
...+..++..+..-.+..|+..|.-+..+++
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv 83 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLV 83 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHHHH
Confidence 3344444445555555566655433444433
No 280
>KOG3574|consensus
Probab=85.25 E-value=17 Score=33.65 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=24.4
Q ss_pred eeeccCCCcchhhhHHHHHHHHHHHHHHH
Q psy17630 228 VMMGELFTPDVKGLALGVICILGSLIEFV 256 (372)
Q Consensus 228 ~~~~e~~p~~~r~~~~~~~~~~~~~~~~~ 256 (372)
+..+.+.|+...|+-+.+.+...++|+--
T Consensus 392 af~aqisdp~iggTymTlLNTLsnLGg~w 420 (510)
T KOG3574|consen 392 AFHAQISDPAIGGTYMTLLNTLSNLGGNW 420 (510)
T ss_pred HHHhhcCCcccCccHHHHHHHHHHhcCCc
Confidence 56678889999999999999998887744
No 281
>KOG2881|consensus
Probab=85.00 E-value=5.8 Score=33.91 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=18.0
Q ss_pred HHHH-HHHhhcCCcchhhHhhHHHHHH
Q psy17630 157 FFSS-LLVDKAGRRPLLLISDICMAIC 182 (372)
Q Consensus 157 ~~~g-~l~dr~grr~~~~~~~~~~~~~ 182 (372)
.++| .++.|+.-|.+.++|.+++.+.
T Consensus 257 VigGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 257 VIGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred HhhhHHHhhhheeEEEEEecchhHHHH
Confidence 3444 6788999888888776655544
No 282
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=81.98 E-value=2 Score=32.12 Aligned_cols=31 Identities=6% Similarity=0.131 Sum_probs=18.8
Q ss_pred hhHHHHHHhhhh--HHHHHHHHHhhcccCCChh
Q psy17630 16 YEDYTIICLSCL--VIPVLNLLVFLIVAPETPV 46 (372)
Q Consensus 16 Wr~~f~i~~~~~--~~~~i~~~~~~~~lpesp~ 46 (372)
-|.+|.+...++ .+++++-+++++.+|+.|.
T Consensus 36 VRl~~vl~~~~~~~~~~~~~Yi~l~~~lp~~P~ 68 (118)
T PRK10697 36 VRIIVVLSIFFGLFVFTLVAYIILSFALDPMPD 68 (118)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhccCCcc
Confidence 577766552222 2345556677888988774
No 283
>KOG4332|consensus
Probab=81.01 E-value=23 Score=31.08 Aligned_cols=101 Identities=5% Similarity=0.006 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCc--chhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhh
Q psy17630 141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRR--PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVF 218 (372)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (372)
-+.+.+-+.+..++|+-+..++..|-..| ..+.+...+......+........ ++ ..++..-++.++++-.+.
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vs----P~-kes~~~s~i~F~~~E~cv 358 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVS----PS-KESPSESLIGFCLFEACV 358 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccC----CC-cCCchHHHHHHHHHHHHH
Confidence 35677777778888888877776654333 334444444443333322222111 11 223444466666666666
Q ss_pred cccccccceeeeccCCCcchhhhHHHHHH
Q psy17630 219 SVGFGPIPGVMMGELFTPDVKGLALGVIC 247 (372)
Q Consensus 219 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 247 (372)
+..+.++. -+=++..|.+.|++.+.+.-
T Consensus 359 GlfwPSim-kmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 359 GLFWPSIM-KMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred hhcchHHH-HHHHhhCCHHHHhhhhhhee
Confidence 66665555 45577889999987765543
No 284
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=77.64 E-value=41 Score=32.13 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=27.1
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHH
Q psy17630 145 QNIVGFI-QVIMTFFSSLLVDKAGRRPLLLISDICMAICIGAL 186 (372)
Q Consensus 145 ~~~~~~~-~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~ 186 (372)
+...++. .++...+++.+.+|.|-....++.-+++.+..+++
T Consensus 327 ~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~litg~lF 369 (509)
T COG3202 327 QIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLITGVLF 369 (509)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4444555 45566778889999888777666655555554443
No 285
>KOG3880|consensus
Probab=73.84 E-value=2.3 Score=37.68 Aligned_cols=46 Identities=2% Similarity=-0.104 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHH
Q psy17630 142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALG 187 (372)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~ 187 (372)
+.+...-.+-..+..+.+..+.||+.--.-..+..++.+.+.++.+
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVa 110 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVA 110 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEE
Confidence 3344444555566677788888886432223334444455444443
No 286
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=73.38 E-value=4.5 Score=30.49 Aligned_cols=31 Identities=6% Similarity=0.052 Sum_probs=18.6
Q ss_pred hhHHHHHHhhhhHH-H-HHHHHHhhcccCCChh
Q psy17630 16 YEDYTIICLSCLVI-P-VLNLLVFLIVAPETPV 46 (372)
Q Consensus 16 Wr~~f~i~~~~~~~-~-~i~~~~~~~~lpesp~ 46 (372)
.|.+|.+...++.. + +++-+++++.+|+.|.
T Consensus 31 VRl~~vl~~~~~~~~~~ll~Y~i~w~~lp~~p~ 63 (121)
T TIGR02978 31 VRILVVSALLFGGGFFVLVAYIALWLLLDKKPI 63 (121)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcc
Confidence 78888876322221 2 2224567788898775
No 287
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.90 E-value=16 Score=26.68 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhhc-CCcchhhHhhHHHH
Q psy17630 149 GFIQVIMTFFSSLLVDKA-GRRPLLLISDICMA 180 (372)
Q Consensus 149 ~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~ 180 (372)
.+.+++.....||+.||| |.++..++.+++.+
T Consensus 52 fIsGilVGa~iG~llD~~agTsPwglIv~lllG 84 (116)
T COG5336 52 FISGILVGAGIGWLLDKFAGTSPWGLIVFLLLG 84 (116)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 344556667789999996 66776555444433
No 288
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=70.35 E-value=47 Score=30.32 Aligned_cols=70 Identities=10% Similarity=0.013 Sum_probs=44.1
Q ss_pred hHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy17630 91 SLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKA 166 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 166 (372)
.++.+.+++ +.+.......+.....+..+..|.|.+..+ + .....+++.....+..++|+.+..++..+-
T Consensus 236 a~~~i~~d~----ril~LG~~qslFE~smy~FVflWtPaL~~~-~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 236 AWRAILSDP----RILLLGLIQSLFEGSMYLFVFLWTPALDPD-D-EELPLGLIFSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred HHHHHHcCc----hhHHHHHHHHHHHHHHHHheeeeeceecCC-C-CCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345555554 344444455555555556667778876521 1 234568888889999999998887665443
No 289
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=68.81 E-value=11 Score=24.57 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=20.0
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCCh
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETP 45 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp 45 (372)
+|.+|.+...++..+++.-++.++.+|+.|
T Consensus 31 vRl~~v~l~~~~~~~~l~Y~~~w~~lP~~~ 60 (61)
T PF04024_consen 31 VRLIFVVLTFFTGGGILLYLILWLLLPKEP 60 (61)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 899998883333334555556777888875
No 290
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=66.08 E-value=62 Score=31.20 Aligned_cols=40 Identities=30% Similarity=0.438 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHH
Q psy17630 144 GQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI 183 (372)
Q Consensus 144 ~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~ 183 (372)
.....++..++.+++++.+.+|+|-+...++.-++..++.
T Consensus 324 ~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~ 363 (491)
T PF03219_consen 324 FSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG 363 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence 4455566777777888999999998877766544444433
No 291
>PRK09609 hypothetical protein; Provisional
Probab=64.18 E-value=1.1e+02 Score=27.38 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=17.1
Q ss_pred hhHHHHHHhhhhH-HHHHHHHHhhcccCCChhHHHhcCC
Q psy17630 16 YEDYTIICLSCLV-IPVLNLLVFLIVAPETPVYLLSKKR 53 (372)
Q Consensus 16 Wr~~f~i~~~~~~-~~~i~~~~~~~~lpesp~~l~~~~~ 53 (372)
|...|-+. ++ .+++..++.+++..--.+|...+.|
T Consensus 78 ffPgFTLs---a~l~GlI~Glf~~~~fk~~~~~f~~~~~ 113 (312)
T PRK09609 78 YHPYYTLA---AMVYGFIPGIVGWFFFKFGKKFFGKESR 113 (312)
T ss_pred cCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 55555555 33 3334344545555555566544433
No 292
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=61.49 E-value=1.9e+02 Score=29.23 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=14.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHH-HHHhhcCC
Q psy17630 140 SPNYGQNIVGFIQVIMTFFSS-LLVDKAGR 168 (372)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~g-~l~dr~gr 168 (372)
....+..+..+..++..++.. ++-.+.+|
T Consensus 281 p~~~lq~~n~L~IIil~Pi~~~~lyp~l~~ 310 (654)
T TIGR00926 281 QPDQMQVVNPLLILIFVPIFDYIVYPAIAK 310 (654)
T ss_pred CHHHHHHHHHHHHHHhHHHHHHhHHHHHHh
Confidence 445555555555555544442 44444433
No 293
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=60.81 E-value=16 Score=32.24 Aligned_cols=10 Identities=40% Similarity=0.783 Sum_probs=7.4
Q ss_pred HHHhhcCCcc
Q psy17630 161 LLVDKAGRRP 170 (372)
Q Consensus 161 ~l~dr~grr~ 170 (372)
.+.+|-||.+
T Consensus 16 kL~~r~gR~~ 25 (336)
T PF07168_consen 16 KLAERRGRLP 25 (336)
T ss_pred HHHHhcCCcc
Confidence 5677878876
No 294
>KOG0055|consensus
Probab=58.50 E-value=1.6e+02 Score=31.72 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=12.7
Q ss_pred hhHHHHHHhhhhHHHHHHH
Q psy17630 16 YEDYTIICLSCLVIPVLNL 34 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~ 34 (372)
||....+. +..|++..
T Consensus 808 W~lalv~l---a~~Pll~~ 823 (1228)
T KOG0055|consen 808 WRLALVVL---ATFPLLIL 823 (1228)
T ss_pred HHHHHHHH---HHHHHHHH
Confidence 99999888 77777743
No 295
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=56.36 E-value=42 Score=31.03 Aligned_cols=20 Identities=10% Similarity=0.394 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q psy17630 148 VGFIQVIMTFFSSLLVDKAG 167 (372)
Q Consensus 148 ~~~~~~~~~~~~g~l~dr~g 167 (372)
..+..++.....|++..|+|
T Consensus 4 ~~i~~i~~ii~~G~~~~~~~ 23 (385)
T PF03547_consen 4 SAILPIFLIILLGYLLGRFG 23 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 34555666677777777764
No 296
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=55.34 E-value=27 Score=27.52 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=20.3
Q ss_pred cceeeeccCCCcchhhhHHHHHHHHHHHHHH
Q psy17630 225 IPGVMMGELFTPDVKGLALGVICILGSLIEF 255 (372)
Q Consensus 225 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~ 255 (372)
+.|..++-..+++..|...|+-.+-.+++-+
T Consensus 114 isYGilSaSWD~~r~GSllG~~e~~~N~~r~ 144 (153)
T PF11947_consen 114 ISYGILSASWDPEREGSLLGWEEFKRNWGRM 144 (153)
T ss_pred hhhhhcccccCCCCCCCcccHHHHHHhHHHH
Confidence 4444555566777778888887776665544
No 297
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=54.41 E-value=24 Score=25.83 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=22.2
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCCh
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETP 45 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp 45 (372)
|+.+|+++ ..++++++.+.+.+.||+.
T Consensus 59 we~~~f~~---~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 59 WELPFFFG---FSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred hHHHHHHH---HHHHHHHHHHHHHcCCCCC
Confidence 99999998 6777777778888889875
No 298
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=53.97 E-value=86 Score=23.03 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=27.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHH
Q psy17630 140 SPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDIC 178 (372)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 178 (372)
..+.......++..++..+.+.+.|..|.+..+......
T Consensus 88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (141)
T TIGR00880 88 ALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAIL 126 (141)
T ss_pred HHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHH
Confidence 344556677788888888999999988877665544333
No 299
>KOG2601|consensus
Probab=53.81 E-value=1.9e+02 Score=26.98 Aligned_cols=45 Identities=9% Similarity=-0.053 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHH
Q psy17630 141 PNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGA 185 (372)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 185 (372)
......+-+....+...+.|...|+..|++++...+.+.=++.+.
T Consensus 65 vAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~v 109 (503)
T KOG2601|consen 65 VAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIV 109 (503)
T ss_pred HHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHH
Confidence 333444445555666777788889999999887666555443333
No 300
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=51.35 E-value=2.4e+02 Score=27.48 Aligned_cols=67 Identities=3% Similarity=-0.005 Sum_probs=31.6
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCC-CCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q psy17630 93 VEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNS-KIISPNYGQNIVGFIQVIMTFFSSLLVDK 165 (372)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 165 (372)
.|+||.|++ ..+++.++....+...... ...++...|+ ++...+.+.....+..++++.++|+.+-|
T Consensus 252 gDVFR~P~~--~~lls~lvG~G~Qll~~~~----~~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~ 319 (521)
T PF02990_consen 252 GDVFRPPKH--PMLLSALVGTGIQLLFMAL----VTLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSAR 319 (521)
T ss_pred HHHhcCcCC--chHHHhHhcchhhhhHHHH----HHHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHH
Confidence 578888753 3444555554444432221 1222223332 33334445555555555555555555544
No 301
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=49.55 E-value=2.5e+02 Score=27.04 Aligned_cols=30 Identities=13% Similarity=0.053 Sum_probs=20.0
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy17630 137 KIISPNYGQNIVGFIQVIMTFFSSLLVDKA 166 (372)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 166 (372)
+..|+.-.....++++-++.+++|.+...+
T Consensus 159 t~~qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 159 TIDEAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556676677777777777777777655543
No 302
>PF15050 SCIMP: SCIMP protein
Probab=47.77 E-value=14 Score=27.35 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=20.0
Q ss_pred hhHHHHHHhhhhHHHH--HHHHHhhcccCCChhHHHhcCCHHHH
Q psy17630 16 YEDYTIICLSCLVIPV--LNLLVFLIVAPETPVYLLSKKRRKDA 57 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~--i~~~~~~~~lpesp~~l~~~~~~~~a 57 (372)
||.-||+.++.+++.+ ++.++++.. -||+.++|+.-+.
T Consensus 4 Wr~nFWiiLAVaII~vS~~lglIlyCv----cR~~lRqGkkwei 43 (133)
T PF15050_consen 4 WRDNFWIILAVAIILVSVVLGLILYCV----CRWQLRQGKKWEI 43 (133)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcccccee
Confidence 8999988854443322 222233322 3677666654443
No 303
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=45.61 E-value=1.8e+02 Score=24.36 Aligned_cols=59 Identities=8% Similarity=-0.004 Sum_probs=32.5
Q ss_pred HHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHH
Q psy17630 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGA 185 (372)
Q Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 185 (372)
..+...+|+++.. + .........+...+.-.+.|.+..|+..++....+.-...++.+.
T Consensus 145 g~liPllp~~~~~-~-----~~~a~~~s~~~~~~~L~~~G~~~a~~~~~~~~~~~l~~~~~G~~a 203 (213)
T PF01988_consen 145 GGLIPLLPYFFLP-S-----VSEAFIASIAVTILALFILGYFKARISGQSWWRSGLEMLLIGLIA 203 (213)
T ss_pred HHHHHHHHHHHhh-h-----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3445556665443 1 113444445555666677788888887776655544444444433
No 304
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=44.42 E-value=2e+02 Score=24.38 Aligned_cols=37 Identities=5% Similarity=-0.070 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH
Q psy17630 148 VGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG 184 (372)
Q Consensus 148 ~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 184 (372)
..+...+.-++.|.+.-|+++++...-+.=...++.+
T Consensus 170 s~~~~~~aL~~~G~~~a~~~~~~~~~~~l~~~~iG~~ 206 (218)
T cd02432 170 TIIATLLALALTGYVSARLGGASVLRAILRNVIWGAL 206 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 3444666777888888888887776544433333333
No 305
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=41.38 E-value=82 Score=23.08 Aligned_cols=47 Identities=11% Similarity=0.029 Sum_probs=36.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHH
Q psy17630 139 ISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGA 185 (372)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 185 (372)
...+-.....+...++.++++++..|+....+-=.+|..++.++..+
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~i 100 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAI 100 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHh
Confidence 56778889999999999999999999987766656665555554443
No 306
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=40.37 E-value=95 Score=26.95 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=11.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHH
Q psy17630 237 DVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 237 ~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
-.|..++|+.....+..+.+.+.
T Consensus 75 ii~~iGLglg~liW~s~n~l~Gw 97 (254)
T PF07857_consen 75 IIKTIGLGLGMLIWGSVNCLTGW 97 (254)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHH
Confidence 34555555555555555554444
No 307
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=39.65 E-value=2.4e+02 Score=23.99 Aligned_cols=33 Identities=9% Similarity=0.004 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH
Q psy17630 152 QVIMTFFSSLLVDKAGRRPLLLISDICMAICIG 184 (372)
Q Consensus 152 ~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 184 (372)
..+.-++.|++.-|+++++....+.-...++.+
T Consensus 180 ~~~~L~~~G~~~~~~~~~~~~~~~l~~~~~G~~ 212 (225)
T cd02434 180 VAFTLFLLGSFKSKLYNGKWIISGIIMLINGAA 212 (225)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 566667788888888777765544433333333
No 308
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=39.46 E-value=1.5e+02 Score=21.57 Aligned_cols=28 Identities=4% Similarity=-0.095 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhcCCcchhhHhhHHHHH
Q psy17630 154 IMTFFSSLLVDKAGRRPLLLISDICMAI 181 (372)
Q Consensus 154 ~~~~~~g~l~dr~grr~~~~~~~~~~~~ 181 (372)
+|.+++-|+=.+++-++.+.+.+++.++
T Consensus 58 ~G~~lG~WLD~~~~t~~~~tl~~lllGv 85 (100)
T TIGR02230 58 LGVAVGIWLDRHYPSPFSWTLTMLIVGV 85 (100)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 3334444444456666554444443333
No 309
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=38.08 E-value=3.1e+02 Score=24.94 Aligned_cols=8 Identities=63% Similarity=0.862 Sum_probs=3.0
Q ss_pred HHHHhhhh
Q psy17630 313 IIGTFFVY 320 (372)
Q Consensus 313 ~~~~~~~~ 320 (372)
++..++.+
T Consensus 296 IiiG~vvy 303 (334)
T PF06027_consen 296 IIIGFVVY 303 (334)
T ss_pred HHHHhheE
Confidence 33333333
No 310
>PRK02237 hypothetical protein; Provisional
Probab=37.10 E-value=1.3e+02 Score=22.17 Aligned_cols=47 Identities=11% Similarity=-0.041 Sum_probs=35.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHH
Q psy17630 139 ISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGA 185 (372)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 185 (372)
.+.+-.....+...++.++++++..|+...-+-=.+|..++.++..+
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~i 102 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAV 102 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHH
Confidence 34778889999999999999999999987665555665555554433
No 311
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=33.58 E-value=13 Score=32.13 Aligned_cols=11 Identities=9% Similarity=0.570 Sum_probs=0.0
Q ss_pred hhhheeccCCC
Q psy17630 317 FFVYFVVPETK 327 (372)
Q Consensus 317 ~~~~~~~~e~~ 327 (372)
++.|.++.+++
T Consensus 179 iLIWlY~H~~~ 189 (381)
T PF05297_consen 179 ILIWLYVHDQR 189 (381)
T ss_dssp -----------
T ss_pred HHHHHHhcCCC
Confidence 34444555544
No 312
>KOG4830|consensus
Probab=33.44 E-value=63 Score=28.27 Aligned_cols=48 Identities=25% Similarity=0.205 Sum_probs=36.6
Q ss_pred HHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHH---------HHhhcCCcch
Q psy17630 124 IFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSL---------LVDKAGRRPL 171 (372)
Q Consensus 124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~---------l~dr~grr~~ 171 (372)
..|+-.++++.|.++.+...++....+...+..++.|. -.||+|||..
T Consensus 37 FTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 37 FTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 34455566777888888888888888888888888764 3578999864
No 313
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=33.43 E-value=21 Score=24.42 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=19.9
Q ss_pred echhhHHhhhhh---hhHHHHHHhhhhHHHHHHHHHhhcccCCChh
Q psy17630 4 SGILYTYVIGSL---YEDYTIICLSCLVIPVLNLLVFLIVAPETPV 46 (372)
Q Consensus 4 ~G~~~~~~i~~~---Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~ 46 (372)
++.+++.++|+. -+..+.+. .+..++.+...+|+=|-
T Consensus 19 ~~~iisfi~Gy~~q~~~~~~~~~------~~g~~~~~lv~vP~Wp~ 58 (76)
T PF06645_consen 19 ISAIISFIVGYITQSFSYTFYIY------GAGVVLTLLVVVPPWPF 58 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhheeCCcHh
Confidence 455666677766 55555554 22223344556666554
No 314
>COG1288 Predicted membrane protein [Function unknown]
Probab=30.75 E-value=2.5e+02 Score=26.59 Aligned_cols=14 Identities=0% Similarity=0.022 Sum_probs=10.2
Q ss_pred hhHHHHHHhhhhHHHHH
Q psy17630 16 YEDYTIICLSCLVIPVL 32 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i 32 (372)
||.+.++. ..+..+
T Consensus 218 ~Riv~~v~---~~~~~i 231 (481)
T COG1288 218 LRIVVWVV---FTLISI 231 (481)
T ss_pred HHHHHHHH---HHHHHH
Confidence 99999988 444444
No 315
>KOG4255|consensus
Probab=30.20 E-value=4.3e+02 Score=24.18 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=15.5
Q ss_pred chHHHHHhhHHHHHhcCCCCCChhhHHHHHHHH
Q psy17630 119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFI 151 (372)
Q Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 151 (372)
+.+..-.-.|...++..-.-....+...+..++
T Consensus 26 ~vn~~wv~lp~lv~elpe~wslpsyl~vvVqla 58 (439)
T KOG4255|consen 26 GVNGLWVELPLLVKELPEGWSLPSYLSVVVQLA 58 (439)
T ss_pred hhcceeeehhHHHhhcCcccccchHHHHHHHHH
Confidence 344444556666776632223334444443333
No 316
>KOG3097|consensus
Probab=29.04 E-value=3.8e+02 Score=24.56 Aligned_cols=117 Identities=9% Similarity=0.037 Sum_probs=0.0
Q ss_pred hccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhh
Q psy17630 97 SNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISD 176 (372)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 176 (372)
|+++-..+-+......+...+..+............++| ++ ......+.-+.++++.+.+.+++|-|.++.++.
T Consensus 22 r~~~~~~knv~i~s~~fl~~f~a~~gl~nlq~~vn~~lg---~~---sl~~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav 95 (390)
T KOG3097|consen 22 RKRLGILKNVLILSIAFLLTFTAYLGLQNLQTSVNYDLG---TV---SLGALYLSLIDSSMFMPLLIRFLGTKWTMVLAV 95 (390)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cc---hhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccC
Q psy17630 177 ICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL 233 (372)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 233 (372)
.........-..- .....+......+.+.+..+.+-. +|++++
T Consensus 96 ~~Y~lyiA~Nl~p-------------r~~tlVPa~~~~G~aa~p~W~Skg-tYlT~~ 138 (390)
T KOG3097|consen 96 FPYALYIAANLEP-------------RYETLVPAGLVLGMAAGPIWASKG-TYLTPM 138 (390)
T ss_pred HHHHHHHHhhcch-------------hHHhhccHHHhhccccccccccCc-ceecHH
No 317
>KOG4112|consensus
Probab=28.36 E-value=48 Score=23.46 Aligned_cols=26 Identities=0% Similarity=0.140 Sum_probs=12.3
Q ss_pred hhHHHHHhcccchhhHHHHHHHHHHHhh
Q psy17630 291 TFDDVERAFGTGVAFGTFAVYCIIGTFF 318 (372)
Q Consensus 291 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 318 (372)
+.+...+.++| ..+ +.++-+++.+++
T Consensus 41 i~Gf~~Qqls~-tvy-~vg~~~v~t~li 66 (101)
T KOG4112|consen 41 IYGFAQQQLSV-TVY-IVGAGFVFTLLI 66 (101)
T ss_pred HHHHHHHHHHH-HHH-HHHHHHHHHHHh
Confidence 55556666666 233 333333444433
No 318
>KOG1278|consensus
Probab=28.23 E-value=1e+02 Score=29.92 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=24.5
Q ss_pred hcCC-CCCChhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy17630 133 ATNS-KIISPNYGQNIVGFIQVIMTFFSSLLVDKA 166 (372)
Q Consensus 133 ~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 166 (372)
-+|+ ++..-+.+.+.+.+..+++.+.+|+.+-|.
T Consensus 352 ~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rl 386 (628)
T KOG1278|consen 352 CLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARL 386 (628)
T ss_pred HhccCCccccccHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3343 666667777777777788888888887774
No 319
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=26.13 E-value=1.9e+02 Score=26.49 Aligned_cols=105 Identities=11% Similarity=0.002 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCc---ch----hhHhhHHHHHHHHHHHHHHH---HhhccccccccccHHHHHHH
Q psy17630 142 NYGQNIVGFIQVIMTFFSSLLVDKAGRR---PL----LLISDICMAICIGALGYYFY---LLKLDEKLVDGLGLLPVASL 211 (372)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~g~l~dr~grr---~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 211 (372)
..+..+..+..++..++..++..++.|+ .. +.+|.++..++.+....... .... +......+..+...
T Consensus 254 ~~l~~~n~i~iii~~pi~~~~~~p~~~~~~~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~--~~~~~~~~~~~~~~ 331 (372)
T PF00854_consen 254 AWLQSFNPIFIIIFIPILDRVVYPLLRRGIQPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQ--PCGKVSPWWQVPMY 331 (372)
T ss_dssp GGGTTHHHHHCHHHHHHHHHHCCCTTTT------HHHHHHH-HHHHHHHHTTTHHHH---HH------TT--THHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHhHHhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhhhhhccc--ccCCCChhhHHHHH
Confidence 3455566666666667777766665542 21 23343444444443332211 0111 11112222323222
Q ss_pred HHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHH
Q psy17630 212 AIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICIL 249 (372)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 249 (372)
.....+ .....++......|.+|++..+...++....
T Consensus 332 ~~~~~~-e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~ 368 (372)
T PF00854_consen 332 IFWLIP-EYFLSGTGESAAYEFAPSRAPSSMMGIWFAL 368 (372)
T ss_dssp HHHHHH-HHTTTTHHHHHHHHHTTTT-SSSSTHHHHHH
T ss_pred HHHHHH-HHHhhHHHHHHHHHhhHHhhhHHHHHHHHHH
Confidence 222222 2333444445667778877777766665543
No 320
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=26.09 E-value=4.2e+02 Score=22.69 Aligned_cols=29 Identities=7% Similarity=-0.065 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhhHhh
Q psy17630 148 VGFIQVIMTFFSSLLVDKAGRRPLLLISD 176 (372)
Q Consensus 148 ~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 176 (372)
..++.+.-.++.-+++.|+|+...+.++.
T Consensus 138 l~~~sl~~~~l~l~ls~~~g~~~si~ig~ 166 (248)
T TIGR03733 138 LIIGSLFLYIIHLFVSFAFGMGASIGIGI 166 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 34455556667778999999766555554
No 321
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=25.94 E-value=74 Score=23.31 Aligned_cols=36 Identities=11% Similarity=-0.124 Sum_probs=23.6
Q ss_pred HHHHhcccchhhHHHHHHHHHHHhhhheeccCCCCC
Q psy17630 294 DVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNK 329 (372)
Q Consensus 294 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 329 (372)
...+..+|..++++...++++.+.+.+.+.|++.-+
T Consensus 52 ~~~d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~ 87 (105)
T PF10183_consen 52 EKRDWEGWELPFFFGFSGSLVFGGVFLAYKPDTSIQ 87 (105)
T ss_pred CcchHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 345667888877766666666655555577887653
No 322
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=25.57 E-value=4.1e+02 Score=22.73 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhcCCcchhhHhhH
Q psy17630 150 FIQVIMTFFSSLLVDKAGRRPLLLISDI 177 (372)
Q Consensus 150 ~~~~~~~~~~g~l~dr~grr~~~~~~~~ 177 (372)
++...-.++.-+++.|+|.-..+.++..
T Consensus 134 i~sl~~i~l~l~ls~~~g~~~si~ig~~ 161 (241)
T TIGR03732 134 LTSLWQIPLCLFLARKFGMFVSILVNLV 161 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444566677877765544444443
No 323
>PRK10263 DNA translocase FtsK; Provisional
Probab=25.49 E-value=7.4e+02 Score=27.39 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q psy17630 147 IVGFIQVIMTFFSSLLVDKAG 167 (372)
Q Consensus 147 ~~~~~~~~~~~~~g~l~dr~g 167 (372)
+.+.++.+|..++..+..-||
T Consensus 60 V~Nl~GiVGA~LAD~L~~LFG 80 (1355)
T PRK10263 60 IHNLGGMPGAWLADTLFFIFG 80 (1355)
T ss_pred cccccchHHHHHHHHHHHHHh
Confidence 345556666666666555555
No 324
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=25.01 E-value=6e+02 Score=24.13 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchh
Q psy17630 149 GFIQVIMTFFSSLLVDKAGRRPLL 172 (372)
Q Consensus 149 ~~~~~~~~~~~g~l~dr~grr~~~ 172 (372)
++..+.-.+++-++.+.+.++++.
T Consensus 301 giLFI~LTF~~fflfE~~~~~~iH 324 (430)
T PF06123_consen 301 GILFIGLTFLAFFLFELLSKLRIH 324 (430)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccc
Confidence 333444455666777777777653
No 325
>KOG1277|consensus
Probab=24.20 E-value=6.4e+02 Score=24.14 Aligned_cols=24 Identities=0% Similarity=-0.112 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q psy17630 141 PNYGQNIVGFIQVIMTFFSSLLVD 164 (372)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~g~l~d 164 (372)
-+.+.+...+..+..+++.|+.+.
T Consensus 325 rGal~saaI~vYAlTs~i~GY~~g 348 (593)
T KOG1277|consen 325 RGALLSAAIVVYALTSPINGYVSG 348 (593)
T ss_pred chHHHHHHHHHHHhcccccccccc
Confidence 444555555666666666666554
No 326
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=24.00 E-value=4.1e+02 Score=21.83 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhccccCC
Q psy17630 239 KGLALGVICILGSLIEFVVVKTVRHRFTP 267 (372)
Q Consensus 239 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (372)
++.......++-++.-.+...+++.+.+|
T Consensus 163 K~~lv~~~sm~lWi~v~i~t~~lPtslN~ 191 (226)
T COG4858 163 KYLLVAVLSMLLWIAVMIATVFLPTSLNP 191 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcCCc
Confidence 34444444555555554444434444333
No 327
>PRK11715 inner membrane protein; Provisional
Probab=23.36 E-value=6.5e+02 Score=23.95 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchh
Q psy17630 149 GFIQVIMTFFSSLLVDKAGRRPLL 172 (372)
Q Consensus 149 ~~~~~~~~~~~g~l~dr~grr~~~ 172 (372)
++..+.-++.+-++.+...++++.
T Consensus 307 giLFI~LTF~~fFlfE~~~~~~iH 330 (436)
T PRK11715 307 AILFIALTFAAFFLFELLKKLRIH 330 (436)
T ss_pred HHHHHHHHHHHHHHHHHhcCceec
Confidence 344445556666778888877763
No 328
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=21.85 E-value=1.1e+02 Score=23.74 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=16.5
Q ss_pred eccCCCcchhhhHHHHHHHHHH
Q psy17630 230 MGELFTPDVKGLALGVICILGS 251 (372)
Q Consensus 230 ~~e~~p~~~r~~~~~~~~~~~~ 251 (372)
+.|++|+..|....+..+....
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~ 81 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSS 81 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHH
Confidence 3789999999887776665444
No 329
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=20.88 E-value=4.6e+02 Score=21.22 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhc-CCcchhhHhhHHHHH
Q psy17630 149 GFIQVIMTFFSSLLVDKA-GRRPLLLISDICMAI 181 (372)
Q Consensus 149 ~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~ 181 (372)
.+.+++++++.-.+-.|+ |.-+-++.|.+..++
T Consensus 78 gv~Si~aAllY~~~l~k~~g~W~Gi~YG~~~W~i 111 (173)
T PF11085_consen 78 GVFSIVAALLYYALLKKFKGPWPGILYGLAWWAI 111 (173)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 444555555555555554 233334444444333
Done!