Query psy17630
Match_columns 372
No_of_seqs 477 out of 1720
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 18:58:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.6E-29 5.5E-34 240.5 22.9 279 16-343 199-483 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.7 1.5E-18 5.2E-23 162.7 7.2 254 4-320 166-431 (451)
3 1pw4_A Glycerol-3-phosphate tr 99.6 8.4E-16 2.9E-20 143.9 11.5 168 120-328 44-212 (451)
4 3o7q_A L-fucose-proton symport 99.6 1.6E-14 5.6E-19 134.7 18.1 176 90-317 249-427 (438)
5 2cfq_A Lactose permease; trans 99.6 1.9E-16 6.6E-21 147.2 4.2 145 140-328 260-405 (417)
6 3o7q_A L-fucose-proton symport 99.6 1.8E-14 6.3E-19 134.3 13.7 130 120-259 42-171 (438)
7 2gfp_A EMRD, multidrug resista 99.5 1E-14 3.4E-19 133.4 8.3 165 120-328 16-180 (375)
8 4aps_A DI-OR tripeptide H+ sym 99.5 1.5E-13 5.3E-18 130.1 14.8 169 124-328 303-477 (491)
9 4aps_A DI-OR tripeptide H+ sym 99.5 2.4E-13 8.3E-18 128.8 12.8 157 120-320 29-194 (491)
10 2xut_A Proton/peptide symporte 99.4 1.1E-12 3.8E-17 125.3 15.3 158 120-320 28-196 (524)
11 2gfp_A EMRD, multidrug resista 99.4 2.6E-14 8.9E-19 130.7 -0.6 202 4-259 135-344 (375)
12 4gc0_A D-xylose-proton symport 99.3 5.8E-13 2E-17 126.1 5.7 119 140-259 56-180 (491)
13 2xut_A Proton/peptide symporte 99.0 1.4E-10 4.7E-15 110.8 6.1 55 204-259 405-459 (524)
14 2cfq_A Lactose permease; trans 99.0 1.3E-10 4.3E-15 107.9 2.4 61 121-181 24-85 (417)
15 2g9p_A Antimicrobial peptide l 47.4 8.8 0.0003 18.3 1.2 14 158-171 2-15 (26)
16 3iyz_A Aquaporin-4; water tran 27.9 39 0.0013 29.5 3.1 21 300-320 245-265 (340)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=1.6e-29 Score=240.51 Aligned_cols=279 Identities=27% Similarity=0.459 Sum_probs=203.4
Q ss_pred hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhhhhhhhHHHH
Q psy17630 16 YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVEI 95 (372)
Q Consensus 16 Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (372)
||+.+.+. .++.+..++..+++||||+|+..+++.+++++.+++.+.++...++..+. ++...++ ++.......
T Consensus 199 ~~~~~~~~----~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~ 272 (491)
T 4gc0_A 199 WRYMFASE----CIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEI-KHSLDHG-RKTGGRLLM 272 (491)
T ss_dssp HHHHHHTT----HHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHTTHHHH
T ss_pred hHHHhhhh----hhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHH-HHHHHhh-hhhhhHHHH
Confidence 88888877 45555577888899999999999999999999988876543322221111 1111111 111111222
Q ss_pred HhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHh
Q psy17630 96 YSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLIS 175 (372)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 175 (372)
++ .++.........+.+..+.+...+|.+.+.+..+.+..+........++...++.++++++.||+|||+.++.+
T Consensus 273 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~ 348 (491)
T 4gc0_A 273 FG----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIG 348 (491)
T ss_dssp SC----CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHH
T ss_pred hc----ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccc
Confidence 22 23455555666677777888899999999988887777777788888999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHH
Q psy17630 176 DICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEF 255 (372)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~ 255 (372)
.....++.+.++....... ..+..+....++..+++.+++++.+.+.+|++|++.|++++++.+..++++++
T Consensus 349 ~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~ 420 (491)
T 4gc0_A 349 ALGMAIGMFSLGTAFYTQA--------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANY 420 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccc--------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH
Confidence 8888887776655432221 12344455555556667778888889999999999999999999999999999
Q ss_pred HHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHH------HHhcccchhhHHHHHHHHHHHhhhheeccCCCCC
Q psy17630 256 VVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDV------ERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNK 329 (372)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 329 (372)
+.+. ..+.+ ....++...|++++++++++.++.++++||||++
T Consensus 421 i~~~-------------------------------~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 421 FVSW-------------------------------TFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHT-------------------------------HHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHH-------------------------------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 8887 44433 2334555688899999999999888899999999
Q ss_pred CHHHHHHHhccCcc
Q psy17630 330 SLQQIQDELSGVKK 343 (372)
Q Consensus 330 ~~~~~~~~~~~~~~ 343 (372)
++||+++..+++++
T Consensus 470 tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 470 TLEELEALWEPETK 483 (491)
T ss_dssp CHHHHGGGTC----
T ss_pred CHHHHHHHhCCCCc
Confidence 99999887765544
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.74 E-value=1.5e-18 Score=162.67 Aligned_cols=254 Identities=13% Similarity=0.053 Sum_probs=159.9
Q ss_pred echhhHHhhhhh-------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHH
Q psy17630 4 SGILYTYVIGSL-------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELD 76 (372)
Q Consensus 4 ~G~~~~~~i~~~-------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 76 (372)
+|.++++.++.. ||+.|++. +++.++..++.++++||+|+....+++.+. +.+.+++.+
T Consensus 166 ~g~~~g~~~~~~l~~~~g~w~~~f~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 231 (451)
T 1pw4_A 166 VGGGIPPLLFLLGMAWFNDWHAALYMP---AFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPDDYN 231 (451)
T ss_dssp HHHTSHHHHHHHHHHHTCCSTTCTHHH---HHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC------
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHH---HHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------cccccccch
Confidence 444555544432 99999999 777777677777889999874321111100 000000000
Q ss_pred HHHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHH
Q psy17630 77 ELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIM 155 (372)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 155 (372)
++..+....++...++.++++..+...+ ..+...........+.|.++++ .|++..+.+.......++.+++
T Consensus 232 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 304 (451)
T 1pw4_A 232 --EKAEQELTAKQIFMQYVLPNKLLWYIAI-----ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPG 304 (451)
T ss_dssp ---------CCTHHHHHHTSSCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHH
T ss_pred --hhhhcccccccchHHHHHcCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 0000000111112355666553332222 2222222345667788888887 6888889999999999999999
Q ss_pred HHHHHHHHhhc--CCcchhhHhhHHHH-HHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeecc
Q psy17630 156 TFFSSLLVDKA--GRRPLLLISDICMA-ICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGE 232 (372)
Q Consensus 156 ~~~~g~l~dr~--grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 232 (372)
.++.|++.||+ |||+.+..+..+.. ++.+.+... . ..+.+.......+.+.+.+. ..+....++.|
T Consensus 305 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~ 373 (451)
T 1pw4_A 305 TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN----P------AGNPTVDMICMIVIGFLIYG-PVMLIGLHALE 373 (451)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC----C------TTCHHHHHHHHHHHHHHHTH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----c------ccCHHHHHHHHHHHHHHHhc-hHHHHHHHHHH
Confidence 99999999999 99998877766555 333332111 0 01223333344444433332 23344478899
Q ss_pred CCCcchhhhHHHHHHHHHHH-HHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHH
Q psy17630 233 LFTPDVKGLALGVICILGSL-IEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVY 311 (372)
Q Consensus 233 ~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 311 (372)
.+|++.|++++++.+....+ +..++|. +.+.+.+..|++..+++.+++
T Consensus 374 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~-------------------------------~~g~l~~~~g~~~~~~~~~~~ 422 (451)
T 1pw4_A 374 LAPKKAAGTAAGFTGLFGYLGGSVAASA-------------------------------IVGYTVDFFGWDGGFMVMIGG 422 (451)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHSSCSHHHHHHHHHH
T ss_pred HhchhhhhhHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHhcCcHHHHHHHHHH
Confidence 99999999999999999999 9999999 889999999998888888888
Q ss_pred HHHHHhhhh
Q psy17630 312 CIIGTFFVY 320 (372)
Q Consensus 312 ~~~~~~~~~ 320 (372)
.+++.++.+
T Consensus 423 ~~~~~~~~~ 431 (451)
T 1pw4_A 423 SILAVILLI 431 (451)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776655
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.63 E-value=8.4e-16 Score=143.94 Aligned_cols=168 Identities=12% Similarity=0.032 Sum_probs=134.1
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
........|.+.++. .+..+.++..+...++..++.+++|+++||+|||++++++.++.+++.+++++.... .
T Consensus 44 ~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~----- 116 (451)
T 1pw4_A 44 RKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-T----- 116 (451)
T ss_dssp HTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH-H-----
T ss_pred HHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-c-----
Confidence 344566778888888 899999999999999999999999999999999999999999998888877652111 1
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
.+.+..++...+.+.+.+.... ...+++.|.+|+++|++++++.+....++..++|.
T Consensus 117 --~~~~~l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~-------------------- 173 (451)
T 1pw4_A 117 --SSIAVMFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPL-------------------- 173 (451)
T ss_dssp --SSSSHHHHHHHHHHHHHHHTHH-HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHH--------------------
T ss_pred --ccHHHHHHHHHHHHHHhhhccc-hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 1244555666666666554443 44488999999999999999999999999999988
Q ss_pred hcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 280 LGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
+.+.+.+..+ |++.|++.++++++..++.++++||+++
T Consensus 174 -----------~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 174 -----------LFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp -----------HHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred -----------HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 7777778888 9999999988888777766667777543
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.62 E-value=1.6e-14 Score=134.67 Aligned_cols=176 Identities=13% Similarity=-0.026 Sum_probs=121.8
Q ss_pred hhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHH-HHhc-CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcC
Q psy17630 90 KSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRI-LIAT-NSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAG 167 (372)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 167 (372)
.+++++++++..+...+..++... .......+.|.+ .++. |++..+.+.......++.+++.++.|+++||+|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 323 (438)
T 3o7q_A 249 ASLSRLARIRHWRWAVLAQFCYVG-----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFA 323 (438)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHhChHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778887744443332222221 234556677777 7776 989999999999999999999999999999999
Q ss_pred CcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHH
Q psy17630 168 RRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVIC 247 (372)
Q Consensus 168 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 247 (372)
||+.+..+.++..++.+++... . .........+.+.+.+.. .+..+.+..|.+|++ |+.+.++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~ 388 (438)
T 3o7q_A 324 PHKVLAAYALIAMALCLISAFA-----G--------GHVGLIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGSSFIV 388 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----C--------HHHHHHHHHHHHHHHTTH-HHHHHHHHHSSCGGG-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHc-----C--------CcHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccc-ccchhhHHH
Confidence 9999988887777766554332 0 112223334444444433 345557778999876 888888776
Q ss_pred HHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHhcc-cchhhHHHHHHHHHHHh
Q psy17630 248 ILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFG-TGVAFGTFAVYCIIGTF 317 (372)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~ 317 (372)
.+.+++.++|. +.+.+.+..| ++..+.+.+++.++..+
T Consensus 389 -~~~~g~~~~~~-------------------------------~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 389 -MTIIGGGIVTP-------------------------------VMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp -HTTHHHHHHHH-------------------------------HHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHH-------------------------------HHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 66788999998 8888999888 88787766555444443
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.61 E-value=1.9e-16 Score=147.20 Aligned_cols=145 Identities=13% Similarity=0.148 Sum_probs=100.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhc
Q psy17630 140 SPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFS 219 (372)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (372)
..+.......++.+++.++.|+++||+|||+++..+..+.++..+.+... . +.+..+....+.+.+..
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-----~-------~~~~~~~~~~l~~~~~~ 327 (417)
T 2cfq_A 260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-----T-------SALEVVILKTLHMFEVP 327 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-----C-------SHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-----c-------cHHHHHHHHHHHHHHHH
Confidence 34566667777888999999999999999999887776666654433211 0 12222222222222222
Q ss_pred ccccccceeeeccCCCcchhhhHHHHH-HHHHHHHHHHHHHhhccccCCcccccchhhhhhhcchhhhhhhhhhHHHHHh
Q psy17630 220 VGFGPIPGVMMGELFTPDVKGLALGVI-CILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERA 298 (372)
Q Consensus 220 ~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (372)
. ..+..+.+++|.+|++.|+++.++. +....+++.++|. +.+.+.+.
T Consensus 328 ~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~-------------------------------l~G~l~~~ 375 (417)
T 2cfq_A 328 F-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV-------------------------------LAGNMYES 375 (417)
T ss_dssp H-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTH-------------------------------HHHTHHHH
T ss_pred H-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhh-------------------------------hHHHHHHh
Confidence 1 1122347889999999999999985 7778899999998 88888887
Q ss_pred cccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 299 FGTGVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 299 ~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
.|+...|.+.+++++++.++.++..||+++
T Consensus 376 ~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 376 IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 887778888888888877766656665443
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.57 E-value=1.8e-14 Score=134.35 Aligned_cols=130 Identities=12% Similarity=-0.039 Sum_probs=105.3
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
........|.+.+++|.+..+.++..+...++..++.++.|+++||+|||++++.+.++.+++.++..... ..
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~----- 114 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA--EI----- 114 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH--HT-----
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc--cc-----
Confidence 45667778888899999999999999999999999999999999999999999999999988887763221 11
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.+.+..++...+.+.+.+.... ...++++|.+|+++|+.++++.+....++..+++.
T Consensus 115 --~~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 171 (438)
T 3o7q_A 115 --MNYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVV 171 (438)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHhhHHHhhh-hHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 1234555556666665554443 34488999999999999999999999999999988
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.54 E-value=1e-14 Score=133.44 Aligned_cols=165 Identities=14% Similarity=0.079 Sum_probs=130.8
Q ss_pred hHHHHHhhHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccccc
Q psy17630 120 INVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKL 199 (372)
Q Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+......
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------- 86 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS--------- 86 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc---------
Confidence 45566677888888899999999999999999999999999999999999999999998888887765541
Q ss_pred cccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhhhh
Q psy17630 200 VDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICI 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (372)
+.+..+....+.+.+.+.. .+....++.|.+|+++|++++++.+....++..++|.
T Consensus 87 ---~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------------- 142 (375)
T 2gfp_A 87 ---SLTVLIAASAMQGMGTGVG-GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPL-------------------- 142 (375)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHH--------------------
T ss_pred ---cHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHH--------------------
Confidence 1234444445554444433 3444478899999999999999999999999999998
Q ss_pred hcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 280 LGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
+.+.+.+..+|+..+.+.+++.++..+...+..||+++
T Consensus 143 -----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 143 -----------IGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp -----------HHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred -----------HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 77777777789999988888887777766667777644
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.51 E-value=1.5e-13 Score=130.14 Aligned_cols=169 Identities=11% Similarity=0.017 Sum_probs=108.4
Q ss_pred HHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhh-----HhhHHHHHHHHHHHHHHHHhhccc
Q psy17630 124 IFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLL-----ISDICMAICIGALGYYFYLLKLDE 197 (372)
Q Consensus 124 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 197 (372)
..+.+.+.++ .+.+..+.+.......+..+++.++.+++.||+|||+... .+..+.+++.+++.........
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 380 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT-- 380 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC--
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 3345555555 4666677888888999999999999999999999987655 5555555555544333211110
Q ss_pred cccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHHhhccccCCcccccchhhh
Q psy17630 198 KLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVI 277 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (372)
..+.+.+.......+.+.+.+.. .+..+.++.|.+|++.|+++.++.+....+++.+++.
T Consensus 381 -~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~------------------ 440 (491)
T 4aps_A 381 -SGKVSPLWLVGSWALVILGEMLI-SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQ------------------ 440 (491)
T ss_dssp -CTTCCTHHHHHHHHHHHHHHHTT-TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHH------------------
T ss_pred -CCCccHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 01123344444444554444433 3445588999999999999999999999999999988
Q ss_pred hhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhheeccCCCC
Q psy17630 278 CILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKN 328 (372)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 328 (372)
+.+.+.+ .++...+.+.++++++..++.+++.++.++
T Consensus 441 -------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 441 -------------LVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp -------------HGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred -------------HHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554433 455567888888877777776655555443
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.47 E-value=2.4e-13 Score=128.79 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=121.1
Q ss_pred hHHHHHhhHHHHHh------cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHhhHHHHHHHHHHHHHHHH
Q psy17630 120 INVVIFYLKRILIA------TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDK-AGRRPLLLISDICMAICIGALGYYFYL 192 (372)
Q Consensus 120 ~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~ 192 (372)
++....+.+.++.+ +|.+..+.++..+...++..++.+++|+++|| +|||+++..+.++.+++.+++...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--- 105 (491)
T 4aps_A 29 YYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--- 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC---
T ss_pred HHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh---
Confidence 34444455555444 79999999999999999999999999999999 899999999988888887765432
Q ss_pred hhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcch--hhhHHHHHHHHHHHHHHHHHHhhccccCCccc
Q psy17630 193 LKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDV--KGLALGVICILGSLIEFVVVKTVRHRFTPDVK 270 (372)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (372)
.+.+..++...+.+.+.+... +...++++|.+|++. |+.+.++.+....++..++|.
T Consensus 106 ---------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~----------- 164 (491)
T 4aps_A 106 ---------FGASALFGSIILIIIGTGFLK-PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPL----------- 164 (491)
T ss_dssp ---------CSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred ---------hhHHHHHHHHHHHHHHHHhcc-chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHH-----------
Confidence 124455555556555555433 344488899999988 777888888999999999998
Q ss_pred ccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630 271 GLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 320 (372)
+.+.+.+..+|++.|++.++..+++.+..+
T Consensus 165 --------------------~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 165 --------------------IVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp --------------------HHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999888776666655544
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.45 E-value=1.1e-12 Score=125.30 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=119.1
Q ss_pred hHHHHHhhHHHH-HhcC------CCCCChhhHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHhhHHHHHHHHHHHHHHH
Q psy17630 120 INVVIFYLKRIL-IATN------SKIISPNYGQNIVGFIQVIMTFFSSLLVDKA-GRRPLLLISDICMAICIGALGYYFY 191 (372)
Q Consensus 120 ~~~~~~~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~ 191 (372)
++....+.+.++ ++.| .+..+.++..+...++..++.+++|+++||+ |||+++..+.++.+++.+++.+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-- 105 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-- 105 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--
Confidence 344455555554 4568 9999999999999999999999999999999 99999999988888877765443
Q ss_pred HhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHH---HHHHHHHHHHHHHHhhccccCCc
Q psy17630 192 LLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGV---ICILGSLIEFVVVKTVRHRFTPD 268 (372)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 268 (372)
. .+.+..++...+.+.+.+... +...+++.|.+|++.|++..+. .+....++..++|.
T Consensus 106 ---~------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~--------- 166 (524)
T 2xut_A 106 ---E------HSVQGFYTGLFLIALGSGGIK-PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASL--------- 166 (524)
T ss_dssp ---S------SCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred ---c------ccHHHHHHHHHHHHHhccccc-hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 0 023444455555555544433 4444888999999999776665 78888899999998
Q ss_pred ccccchhhhhhhcchhhhhhhhhhHHHHHhcccchhhHHHHHHHHHHHhhhh
Q psy17630 269 VKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 320 (372)
+.+.+.+..+|+..|.+.+++.++..+...
T Consensus 167 ----------------------~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 167 ----------------------SMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp ----------------------TSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 777788888999999888877766655544
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.39 E-value=2.6e-14 Score=130.65 Aligned_cols=202 Identities=14% Similarity=0.082 Sum_probs=122.7
Q ss_pred echhhHHhhhhh------hhHHHHHHhhhhHHHHHHHHHhhcccCCChhHHHhcCCHHHHHHHHHHHcCCCcchHHHHHH
Q psy17630 4 SGILYTYVIGSL------YEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDE 77 (372)
Q Consensus 4 ~G~~~~~~i~~~------Wr~~f~i~~~~~~~~~i~~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 77 (372)
+|..+++.++.. ||+.|++. +++.++..+...+.+||+|+.. +++
T Consensus 135 ~g~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~----------------------- 185 (375)
T 2gfp_A 135 VSPLLAPLIGGLLDTMWNWRACYLFL---LVLCAGVTFSMARWMPETRPVD---APR----------------------- 185 (375)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHH---HHHHHHHHCCCCCSSCCCSTTT---CCC-----------------------
T ss_pred HHHHhhHHHHHHHHHhccHHHHHHHH---HHHHHHHHHHHHHHCcccCCCC---ccc-----------------------
Confidence 455555555544 99999998 7777775555777889987521 000
Q ss_pred HHHHHHHhhhhhhhHHHHHhccchhHHHHHHHHHHHHHHhhchHHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHH
Q psy17630 78 LQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMT 156 (372)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 156 (372)
++.+.++++.+++|..+...+.... ..........+.|.+.++ .|.+..+.+.......++.+++.
T Consensus 186 --------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 252 (375)
T 2gfp_A 186 --------TRLLTSYKTLFGNSGFNCYLLMLIG-----GLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA 252 (375)
T ss_dssp --------CCTTTCSTHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred --------ccHHHHHHHHhcCcchHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 0112234556666533332222221 222244556677776666 68888888999999999999999
Q ss_pred HHHHHHHhhcCCcchhhHhhHH-HHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhhcccccccceeeeccCCC
Q psy17630 157 FFSSLLVDKAGRRPLLLISDIC-MAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFT 235 (372)
Q Consensus 157 ~~~g~l~dr~grr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 235 (372)
++.+++.||++|+ +..+... ...+......... ... +.+.......+.+.+.+... +....+..|..|
T Consensus 253 ~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p 321 (375)
T 2gfp_A 253 WFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF-GVM-------NVWTLLVPAALFFFGAGMLF-PLATSGAMEPFP 321 (375)
T ss_dssp HHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH-HHH-------HHHHHHHHHHHHHHHHHHTS-STTHHHHHTHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh-ccc-------cHHHHHHHHHHHHHHHHHhh-HHHHHHHHHhCC
Confidence 9999999999873 2333222 1211111111110 000 12333344444444544433 444478899998
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 236 PDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 236 ~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
+.|+++.++.+....+++.++|.
T Consensus 322 -~~~g~~~g~~~~~~~~g~~~~~~ 344 (375)
T 2gfp_A 322 -FLAGTAGALVGGLQNIGSGVLAS 344 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCCST
T ss_pred -cccchHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998888
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.34 E-value=5.8e-13 Score=126.11 Aligned_cols=119 Identities=13% Similarity=-0.014 Sum_probs=83.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHhhccc------cccccccHHHHHHHHH
Q psy17630 140 SPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDE------KLVDGLGLLPVASLAI 213 (372)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 213 (372)
..++..+...++.++|++++|+++||+|||++++++.++..++.++.++......... .....+.+..++..++
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l 135 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRII 135 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHH
Confidence 3456777788999999999999999999999999999999988887654210000000 0001224455666666
Q ss_pred HHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 214 YIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.+++.+... +...++++|..|++.|+...++.......+..+++.
T Consensus 136 ~G~g~G~~~-~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~ 180 (491)
T 4gc0_A 136 GGIGVGLAS-MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYC 180 (491)
T ss_dssp HHHHHHHHH-HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhh
Confidence 666655443 344589999999999999999888777666665554
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.05 E-value=1.4e-10 Score=110.76 Aligned_cols=55 Identities=7% Similarity=-0.062 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHHhhcccccccceeeeccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy17630 204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~ 259 (372)
.+..+....+.+.+.+.. .+..+.+..|..|++.|++++++.+....+++.++|.
T Consensus 405 ~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~ 459 (524)
T 2xut_A 405 IFWQILPYALLTFGEVLV-SATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLL 459 (524)
T ss_dssp SHHHHHHHHHHHHHHHHH-HHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333 3444578899999999999999999999999999988
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.97 E-value=1.3e-10 Score=107.86 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=51.7
Q ss_pred HHHHHhhHHHHHh-cCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHH
Q psy17630 121 NVVIFYLKRILIA-TNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAI 181 (372)
Q Consensus 121 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~ 181 (372)
.....+.|.++++ .|.+..+.++..+...++..++++++|+++||+|||++++++..+..+
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3445667777665 699999999999999999999999999999999999999887766544
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=47.35 E-value=8.8 Score=18.32 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=11.1
Q ss_pred HHHHHHhhcCCcch
Q psy17630 158 FSSLLVDKAGRRPL 171 (372)
Q Consensus 158 ~~g~l~dr~grr~~ 171 (372)
+.|.+..++|||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46788999999854
No 16
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=27.90 E-value=39 Score=29.47 Aligned_cols=21 Identities=5% Similarity=-0.123 Sum_probs=10.2
Q ss_pred ccchhhHHHHHHHHHHHhhhh
Q psy17630 300 GTGVAFGTFAVYCIIGTFFVY 320 (372)
Q Consensus 300 g~~~~~~~~~~~~~~~~~~~~ 320 (372)
++.|.+++...+..+.+.+.+
T Consensus 245 ~~~WVywvgPiiGailaallY 265 (340)
T 3iyz_A 245 ENHWIYWVGPIIGAVLAGALY 265 (340)
T ss_pred CcEeehhHHHHHHHHHHHHHH
Confidence 334566665555444443333
Done!