RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17630
(372 letters)
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 139 bits (352), Expect = 4e-37
Identities = 92/345 (26%), Positives = 148/345 (42%), Gaps = 45/345 (13%)
Query: 1 MVVSGILYTYVIGSL-----YED-YTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRR 54
+ GIL Y GS + I L+ L L + L PE+P +L+ K R
Sbjct: 171 AITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGL-LFLGLFFLPESPRWLVGKGRV 229
Query: 55 KDAEKSLLILRGPNYDIHGELDELQ-----KELDIQAQKKKSLVEIYSNKATVKATIVIV 109
++A KSL LRG + + LDEL+ + ++ ++ + S + + + V
Sbjct: 230 EEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGV 289
Query: 110 GLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR 169
L F F+GIN +++Y I IVG + TF + LVD+ GRR
Sbjct: 290 VLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR 349
Query: 170 PLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVM 229
PLLLI MAIC+ LG G + + + ++I F++G+GP+P V+
Sbjct: 350 PLLLIGAAGMAICLFVLGILGA--SFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVI 407
Query: 230 MGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVV 289
+ E+F ++ KG+++ V L F+V
Sbjct: 408 VSEIFPLSLRP-----------------------------KGISIAVAANW--LANFIVG 436
Query: 290 KTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQI 334
F + + G G F F ++G FVYF +PETK ++L++I
Sbjct: 437 FLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 133 bits (337), Expect = 4e-35
Identities = 92/342 (26%), Positives = 154/342 (45%), Gaps = 47/342 (13%)
Query: 1 MVVSGILYTYVIG-----SLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRK 55
+ GIL +IG D I L +P + LL+ L+ PE+P +L+ K + +
Sbjct: 145 GITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLE 204
Query: 56 DAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLV-EIYSNKATVKATIVIVGLLCF 114
+A L LRG + D+ E+ E + L+ + +K+ E++ K + ++ V L F
Sbjct: 205 EARAVLAKLRGVS-DVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIF 263
Query: 115 LSFSGINVVIFYLKRILIATNSKIISPNYGQNI-VGFIQVIMTFFSSLLVDKAGRRPLLL 173
+GIN + +Y I + +S + I VG + + TF + LVD+ GRRPLLL
Sbjct: 264 QQLTGINAIFYYSPTIF---ETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLL 320
Query: 174 ISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGEL 233
+ MAIC L LL + + G+ + + ++I F++G+GP+P V++ EL
Sbjct: 321 LGAAGMAIC--FLVLGVALLGVAKSKGAGIVAI--VFILLFIAFFALGWGPVPWVIVSEL 376
Query: 234 FTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFD 293
F V+ A+ + L F++ P I+ I V
Sbjct: 377 FPLGVRPKAMAIATAANWLANFLIG-----FLFP-----------IITGAIGGYV----- 415
Query: 294 DVERAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQ 335
F FA ++ FV+F VPETK ++L++I
Sbjct: 416 -----------FLVFAGLLVLFILFVFFFVPETKGRTLEEID 446
Score = 28.8 bits (65), Expect = 5.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 157 FFSSLLVDKAGRRPLLLISDICMAICIG 184
F+ L D+ GR+ LLI ++ I
Sbjct: 64 LFAGKLGDRFGRKKSLLIGNVLFVIGAL 91
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 110 bits (276), Expect = 1e-26
Identities = 80/326 (24%), Positives = 143/326 (43%), Gaps = 53/326 (16%)
Query: 28 VIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQ 87
IP L L+ L PETP YL+S+ +++ AE L + G L E++ LD +
Sbjct: 201 AIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT-LATQALQEIKHSLDHGRK 259
Query: 88 KKKSLVEIYSNKATVKATIVIVGLL--CFLSFSGINVVIFYLKRIL----IATNSKIISP 141
L+ ++++G++ F F GINVV++Y I +T+ ++
Sbjct: 260 TGGKLL-------MFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQ- 311
Query: 142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVD 201
IVG I + T + + VDK GR+PL +I + MAI + +LG FY
Sbjct: 312 ---TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY--------TQ 360
Query: 202 GLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTV 261
G++ + S+ Y+ F++ +GP+ V++ E+F ++G AL + + + V T
Sbjct: 361 APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWT- 419
Query: 262 RHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYF 321
F ++ + F G ++ + ++ F++
Sbjct: 420 ------------------------FPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 455
Query: 322 VVPETKNKSLQQIQDELSGVKKKKKA 347
VPETK K+L+++ E + KK
Sbjct: 456 FVPETKGKTLEEM--EALWEPETKKT 479
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 44.2 bits (105), Expect = 6e-05
Identities = 37/226 (16%), Positives = 78/226 (34%), Gaps = 33/226 (14%)
Query: 104 ATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLV 163
+ + L L ++ + L L + S+ + + + + L
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA---GLIVSAFSLGYALGSLLAGYLS 58
Query: 164 DKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFG 223
D+ GRR +LL+ + A +G+L F + L + + +G G
Sbjct: 59 DRFGRRRVLLLGLLLFA--LGSLLLAF--------------ASSLWLLLVGRFLLGLGGG 102
Query: 224 ---PIPGVMMGELFTPDVKGLALGVICI---LGSLIEFVVVKTVRHRFTPDVKGLALGVI 277
P ++ E F P +G ALG+ LG+L+ ++ + L L ++
Sbjct: 103 ALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAIL 162
Query: 278 CILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVV 323
+L +L+ +++ +A F + Y +
Sbjct: 163 GLLLALLLLFLLRLL--------LLLALAFFLLSFGYYGLLTYLPL 200
Score = 43.5 bits (103), Expect = 1e-04
Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 16/184 (8%)
Query: 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIV-GFIQVIMTFFSSLLV 163
++++ L FL G ++ YL L + + G ++ LL
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235
Query: 164 DKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFG 223
D+ GRR LLL+ I + + L L L + +L + F
Sbjct: 236 DRLGRRRLLLL--IGLLLAALGLLLLALAPSL---------ALLLVALLLLGFGLGFAFP 284
Query: 224 PIPGVMMGELFTPDVKGLALGVICILGSLIEFV---VVKTVRHRFTPDVKGLALGVICIL 280
+ + EL P+ +G A G+ GSL + + + L L + +L
Sbjct: 285 ALL-TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL 343
Query: 281 GSLI 284
+L+
Sbjct: 344 AALL 347
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 43.4 bits (103), Expect = 1e-04
Identities = 52/277 (18%), Positives = 97/277 (35%), Gaps = 42/277 (15%)
Query: 89 KKSLVEIYSNKATVKATIVIVGLLCFLSFSGIN--VVIFYLKRILIATNSKIISPNYGQN 146
K S + I+ N+ + ++++ L I ++++Y+ +L +
Sbjct: 226 KDSFLLIFKNRPLL---LLLLMNLLLFIAFNIRGSIMVYYVTYVL---GDPELFAYLLLL 279
Query: 147 IVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLL 206
G +I LV K G++ L LI + + +G L YF
Sbjct: 280 ASGAGLLIGLILWPRLVKKFGKKKLFLIG--LLLLAVGYLLLYF------------TPAG 325
Query: 207 PVASLAIYIIVFSVGFG---PIPGVMMGELFTPDVKGLALGVIC--ILGSLIEFVVVKTV 261
V + + +I+ VG G P+P M+ T D GV I+ S + F K
Sbjct: 326 SVVLIVVALIIAGVGTGIANPLPWAMVA--DTVDYGEWKTGVRREGIVYSGMTF-FRKLG 382
Query: 262 RHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYF 321
LA + + I +V + FG F ++ + F
Sbjct: 383 L--------ALAGFIPGWILGAIGYVPNVSAQSASALFGIRFLFIILPALLLLLAAIIIF 434
Query: 322 VVPETKNKSLQQIQDELSGVKKKKKARRTGSASRKST 358
+ K ++I +EL ++K A +++ T
Sbjct: 435 FYKLNE-KMHKEIIEELE---QRKAAGSQQPTAKEVT 467
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 36.9 bits (86), Expect = 0.015
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 9/107 (8%)
Query: 147 IVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLL 206
+ + I S L D+ GRRP+L I L + L L G L
Sbjct: 263 LSLILFFITIPLSGALSDRIGRRPVL--------IIFTVLAALLAVPLLMALLDSGSFTL 314
Query: 207 PVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSLI 253
+ ++ + GP+ G + ELF +V+ + L I
Sbjct: 315 FFFLVLGMALIGGMYTGPM-GSFLPELFPTEVRYTGASLAYNLAGAI 360
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 35.4 bits (82), Expect = 0.045
Identities = 54/256 (21%), Positives = 96/256 (37%), Gaps = 44/256 (17%)
Query: 42 PETPVYLLSKKRRKDAEKSLL-ILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKA 100
PE+P +L+S+ R ++A K L I + + E+ L E D+ + KK+ YS
Sbjct: 264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQ-----YSFLD 318
Query: 101 TV-KATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMT--- 156
+ L + + + L L N G NI I
Sbjct: 319 LFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDL---------GNLGGNIY-LDLFISGLVE 368
Query: 157 ----FFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA 212
+ LL+D+ GRR + S + + + L ++ L L +L +
Sbjct: 369 LPAKLITLLLIDRLGRRYTMAASLLLAGVALLLL---LFVPVDLYFLRTALAVLGKFGIT 425
Query: 213 I-YIIVFSVGFGPIPGVMMGELFTPDVKGLALGV---ICILGSLIE-FVVVKTVRHRFTP 267
+ +V+ + EL+ V+ L +GV + +GS+I F+V + F P
Sbjct: 426 SAFQMVY---------LYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLP 476
Query: 268 DVKGLALGVICILGSL 283
V G + +L +
Sbjct: 477 LV---LFGGLALLAGI 489
>gnl|CDD|217785 pfam03901, Glyco_transf_22, Alg9-like mannosyltransferase family.
Members of this family are mannosyltransferase enzymes.
At least some members are localised in endoplasmic
reticulum and involved in GPI anchor biosynthesis.
Length = 412
Score = 35.0 bits (81), Expect = 0.062
Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 17/157 (10%)
Query: 114 FLSFSGINVVIFYLKRILIATNS--------KIISPNYGQNIVGFIQVIMTFFSSLLVDK 165
F ++FY R+L+ S + + YG+ I ++++ S +
Sbjct: 70 ARLFLDSKYLVFYAPRLLLGLFSALADYYLYRAVCRLYGKEI-ARWALLLSLSSWGMFYA 128
Query: 166 AGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDG---LGLLPVASLAIYIIVFSVGF 222
+ R L + M + AL Y + V +L +A+LAI S
Sbjct: 129 STR---TLPNSFEMILTSIALYYLLEYGSVPNTSVSYKYLKAVLLIAALAILGRPTSALL 185
Query: 223 GPIPGV-MMGELFTPDVKGLALGVICILGSLIEFVVV 258
+ + L +K I + G L+ +V+
Sbjct: 186 WLPLVLYHLLRLPGKRLKLFLFLAISL-GLLVLLLVL 221
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 33.9 bits (78), Expect = 0.10
Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 12/166 (7%)
Query: 87 QKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQN 146
+ LV + +++ LL F + L + ++ ++ + G
Sbjct: 187 EAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLG-- 244
Query: 147 IVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLL 206
+ G + I L D+ GRR LL++ + + + L L
Sbjct: 245 LAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTE---------SSLW 295
Query: 207 PVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILGSL 252
+ +L + + F + ++ +L + +G A G+ GSL
Sbjct: 296 LLVALLLLGFGAGLVFPALNALVS-DLAPKEERGTASGLYNTAGSL 340
Score = 31.2 bits (71), Expect = 0.85
Identities = 28/145 (19%), Positives = 54/145 (37%), Gaps = 23/145 (15%)
Query: 106 IVIVGLLCFLSFSGINVVI-FYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD 164
+ + L L S + + YL L + ++I + + L D
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEI---GLLLTAFSLGYALAQPLAGRLSD 57
Query: 165 KAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFG- 223
+ GRR +LLI + A+ + L L + L + ++ +G G
Sbjct: 58 RFGRRRVLLIGLLLFALGLLLL----------------LFASSLWLLLVLRVLQGLGGGA 101
Query: 224 --PIPGVMMGELFTPDVKGLALGVI 246
P ++ + F P+ +G ALG++
Sbjct: 102 LFPAAAALIADWFPPEERGRALGLL 126
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional.
Length = 459
Score = 33.5 bits (77), Expect = 0.20
Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 13/57 (22%)
Query: 95 IYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYG-QNIVGF 150
+Y N VKA IV G LC G+NVVI L LI NYG + I G
Sbjct: 81 LYFNPKEVKAGIVTCGGLC----PGLNVVIRELVMNLIN--------NYGVKTIYGA 125
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 33.1 bits (76), Expect = 0.20
Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 5/148 (3%)
Query: 28 VIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQ 87
+ P+L LL+ + PE+ +L+SK+ I + L E +
Sbjct: 179 IAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKAT----QG 234
Query: 88 KKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNI 147
K+S+ + T + T+++ L L G+ + +L ++++ + G +
Sbjct: 235 TKRSVFKALFQGKTARITVLLWLLYFMLLV-GVYFLTNWLPKLMVELGFSLSLAATGGAL 293
Query: 148 VGFIQVIMTFFSSLLVDKAGRRPLLLIS 175
F VI + L D+ G R L+
Sbjct: 294 FNFGGVIGSIIFGWLADRLGPRVTALLL 321
>gnl|CDD|193185 pfam12709, Kinetocho_Slk19, Central kinetochore-associated. This
is a family of proteins integrally involved in the
central kinetochore. Slk19 is a yeast member and it may
play an important role in the timing of nuclear
migration. It may also participate, directly or
indirectly, in the maintenance of centromeric tensile
strength during mitotic stagnation, for instance during
activation of checkpoint controls, when cells need to
preserve nuclear integrity until cell cycle progression
can be resumed.
Length = 87
Score = 30.8 bits (70), Expect = 0.24
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 43 ETPVYLLSKKRRKDAEKSLLILRGPNYDIHGELDELQKELDIQAQKKKSLVE 94
E V +L K +K L L N + E+++L+K+LD + ++K+ L++
Sbjct: 33 EQKVKMLKKGYEAKYQKKLDELELENKALKQEIEQLKKQLDTERKEKQELLK 84
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 32.4 bits (74), Expect = 0.40
Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 45/187 (24%)
Query: 158 FSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIV 217
+ LVD GR+P+ L+ + + LG+ + L LAIY++
Sbjct: 354 VTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS------------THGFLAIYVLA 401
Query: 218 -FSVGFGP--IPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLAL 274
F FGP ++ GE+F + A G+ G
Sbjct: 402 QFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGK----------------------- 438
Query: 275 GVICILGSLIEFVVVKTFDDVERAFGTGVAFG----TFAVYCIIGTFFVYFVVPETKNKS 330
I+G F+ + D + + TG+ G FA++ +G F ++PETK KS
Sbjct: 439 -AGAIIGQFG-FLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKS 495
Query: 331 LQQIQDE 337
L+++ E
Sbjct: 496 LEELSGE 502
>gnl|CDD|234827 PRK00733, hppA, membrane-bound proton-translocating
pyrophosphatase; Validated.
Length = 666
Score = 32.0 bits (74), Expect = 0.54
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 272 LALGVICILGSLIEFVVVKTFD--DVERAFGTGVAFGTFAVYCIIGTFFVYFVV 323
L + + I+ S+I V+ + +A G+ T AV I+ T+F + +
Sbjct: 240 LLIAAVGIIASIIGIFFVRLGKGGNPMKALNRGL-IVT-AVLSIVLTYFATYWL 291
>gnl|CDD|216553 pfam01528, Herpes_glycop, Herpesvirus glycoprotein M. The
herpesvirus glycoprotein M (gM) is an integral membrane
protein predicted to contain 8 transmembrane segments.
Glycoprotein M is not essential for viral replication.
Length = 374
Score = 31.5 bits (72), Expect = 0.63
Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 21/159 (13%)
Query: 211 LAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVI-------CILGSLIEFVVVKTVRH 263
L + +VFS+ + +G F V + G I I + E V+ + V+
Sbjct: 215 LGLETLVFSLSLM----MAIGNSFYVSVSDVVFGAINLFLVLTLIYLLVTEVVLSRYVKV 270
Query: 264 RFTPDVKGLALGVICILGSLIEFVV--VKTFDDVERAFGTGVAFGTFAVYCIIGT---FF 318
+F G LGV+ G L ++ F + A+ C++
Sbjct: 271 QF-----GFYLGVLIASGILGLPIIRYEAIFVAANLHTAIAINLAVIALLCLVMIIVRLV 325
Query: 319 VYFVVPETKNKSLQQIQDELSGVKKKKKARRTGSASRKS 357
++ ++ + + K K RR S+ S
Sbjct: 326 RAYLYHRRRSTRYYALVRTVRETVKSYKRRRRSKLSQAS 364
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 31.3 bits (71), Expect = 0.88
Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 32/182 (17%)
Query: 74 ELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGL-----LCFLSFSGINVVIFYLK 128
+LDE ++ ++ SL ++ N+ +A I+++G LCF +F+ Y++
Sbjct: 217 QLDETSQQETRALKEAGSLKGLWRNR---RAFIMVLGFTAAGSLCFYTFTT------YMQ 267
Query: 129 RILIATNSKIISPNYGQNIVG---FIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGA 185
+ L+ N+ + N I+ F+ +++ L DK GRR +L C G+
Sbjct: 268 KYLV--NTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSML--------CFGS 317
Query: 186 LGYYFY--LLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLAL 243
L F +L + + + A+ I+ F + I G++ E+F V+ L +
Sbjct: 318 LAALFTVPILSALQNVSSPYAAFGLVMCALLIVSF---YTSISGILKAEMFPAQVRALGV 374
Query: 244 GV 245
G+
Sbjct: 375 GL 376
>gnl|CDD|163667 cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain.
PrpA and PrpB are bacterial type I serine/threonine
and tyrosine phosphatases thought to modulate the
expression of proteins that protect the cell upon
accumulation of misfolded proteins in the periplasm.
The PPP (phosphoprotein phosphatase) family, to which
PrpA and PrpB belong, is one of two known protein
phosphatase families specific for serine and threonine.
This family also includes: PP1, PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
and ApA4 hydrolase. The PPP catalytic domain is defined
by three conserved motifs (-GDXHG-, -GDXVDRG- and
-GNHE-). The PPP enzyme family is ancient with members
found in all eukaryotes, and in most bacterial and
archeal genomes. Dephosphorylation of phosphoserines
and phosphothreonines on target proteins plays a
central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and
acid sphingomyelinases (ASMases). The conserved domain
is a double beta-sheet sandwich with a di-metal active
site made up of residues located at the C-terminal side
of the sheets. This domain is thought to allow for
productive metal coordination.
Length = 207
Score = 30.3 bits (69), Expect = 1.3
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 70 DIHGELDELQKELD 83
DIHG LQK LD
Sbjct: 8 DIHGHYSLLQKALD 21
>gnl|CDD|235253 PRK04201, PRK04201, zinc transporter ZupT; Provisional.
Length = 265
Score = 30.2 bits (69), Expect = 1.4
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 240 GLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAF 299
GLA G +GSLI F K +RF G A GV+ + S +E ++ K + A+
Sbjct: 15 GLATG----IGSLIAFFG-KKPNNRFLSFSLGFAAGVM-LYVSFME-ILPKALAALTEAY 67
Query: 300 GTGVAFGTFAVYCIIGTFFVYFV----VPETKNKSLQQIQDELSGVKKKKKARRTG 351
G G+ G F+ VP L Q ++ K +RTG
Sbjct: 68 GEGMGP-WLGYGAFFGGILGIFLIDRLVPHENPHELMQKEEMEFQQPLPKSLKRTG 122
>gnl|CDD|225058 COG2147, RPL19A, Ribosomal protein L19E [Translation, ribosomal
structure and biogenesis].
Length = 150
Score = 29.2 bits (66), Expect = 1.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 342 KKKKKARRTGSASRKSTK 359
+KKK RR G SRK TK
Sbjct: 68 AQKKKGRRRGPGSRKGTK 85
>gnl|CDD|217327 pfam03030, H_PPase, Inorganic H+ pyrophosphatase. The H+
pyrophosphatase is an transmembrane proton pump involved
in establishing the H+ electrochemical potential
difference between the vacuole lumen and the cell
cytosol. Vacuolar-type H(+)-translocating inorganic
pyrophosphatases have long been considered to be
restricted to plants and to a few species of
photo-trophic bacteria. However, in recent
investigations, these pyrophosphatases have been found
in organisms as disparate as thermophilic Archaea and
parasitic protists.
Length = 669
Score = 30.1 bits (69), Expect = 2.1
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 272 LALGVICILGSLIEFVVVKTFD--DVERAFGTGVAFGTFAVYCIIGTFFVYFVV 323
L + + I+ S+I V+T + +A G+ + A+ I+ T+F + +
Sbjct: 254 LLVAAVGIIASIIGTFFVRTGKGANPMKALNRGL-IVS-AILSIVATYFATYWL 305
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 30.0 bits (68), Expect = 2.2
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 51 KKRRKDAEKSLLILRGPN----YDIHGELDELQKELDIQAQKKKSLVEI 95
K+RRK+ E+ L R N DI EL+ K L+ QA+K + E+
Sbjct: 171 KERRKETERKLERTRE-NLDRLEDILNELERQLKSLERQAEKAERYKEL 218
>gnl|CDD|238268 cd00481, Ribosomal_L19e, Ribosomal protein L19e. L19e is found in
the large ribosomal subunit of eukaryotes and archaea.
L19e is distinct from the ribosomal subunit L19, which
is found in prokaryotes. It consists of two small
globular domains connected by an extended segment. It is
located toward the surface of the large subunit, with
one exposed end involved in forming the intersubunit
bridge with the small subunit. The other exposed end is
involved in forming the translocon binding site, along
with L22, L23, L24, L29, and L31e subunits.
Length = 145
Score = 28.3 bits (64), Expect = 3.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 342 KKKKKARRTGSASRKSTK 359
+ ++K R G SRK TK
Sbjct: 65 EARRKGRHRGPGSRKGTK 82
>gnl|CDD|201707 pfam01280, Ribosomal_L19e, Ribosomal protein L19e.
Length = 148
Score = 28.3 bits (64), Expect = 4.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 342 KKKKKARRTGSASRKSTK 359
+K++K R G SRK TK
Sbjct: 67 EKRRKGRHRGPGSRKGTK 84
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 304
Score = 28.8 bits (65), Expect = 4.2
Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 18/127 (14%)
Query: 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD 164
T+ + + + +G +++ +KR++ + G ++ + + V
Sbjct: 82 TLASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVG 141
Query: 165 KAGRRPLLLI------SDICMAIC--IGALGYYFYLLKLDEKLVDGLGLLPVASLAIYII 216
K L+ SD+ ++ +G LG LD P+A+L I +
Sbjct: 142 KKTNSQALIADALHHRSDVLTSLAVLVGLLGSLLGWPWLD----------PLAALLISLY 191
Query: 217 VFSVGFG 223
+ GF
Sbjct: 192 ILKTGFR 198
>gnl|CDD|238706 cd01418, Ribosomal_L19e_A, Ribosomal protein L19e, archaeal. L19e
is found in the large ribosomal subunit of eukaryotes
and archaea. L19e is distinct from the ribosomal subunit
L19, which is found in prokaryotes. It consists of two
small globular domains connected by an extended segment.
It is located toward the surface of the large subunit,
with one exposed end involved in forming the
intersubunit bridge with the small subunit. The other
exposed end is involved in forming the translocon
binding site, along with L22, L23, L24, L29, and L31e
subunits.
Length = 145
Score = 28.1 bits (63), Expect = 4.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 342 KKKKKARRTGSASRKSTK 359
+K+KK RR G SRK K
Sbjct: 65 EKRKKGRRRGPGSRKGKK 82
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 29.2 bits (65), Expect = 4.9
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 21/134 (15%)
Query: 122 VVIFYLKRILIATNSKIISPNYGQNIVGFI----QVIMTFFSSLLVDKAGRRPLLLISDI 177
V +F + +L + + P+ G+ ++G I ++ FF L DK GR+
Sbjct: 181 VEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQ------- 233
Query: 178 CMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVM--MGELFT 235
C+ IC+ G++ + V G G L + F +G G IP V E
Sbjct: 234 CLLICLSVNGFFAFF----SSFVQGYGFFLFCRL---LSGFGIG-GAIPIVFSYFAEFLA 285
Query: 236 PDVKGLALGVICIL 249
+ +G L +C+
Sbjct: 286 QEKRGEHLSWLCMF 299
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 28.9 bits (65), Expect = 5.0
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 51 KKRRKDAEKSLLILRGPNYDIHGELDELQKELDI-QAQKKKSLVEIYSNKATVK 103
E+ L L+ + EL +LQ+EL +AQ + S + +A +
Sbjct: 461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE 514
>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter.
This model describes a broadly distributed family of
transporters, a number of which have been shown to
transport divalent cations of cobalt, cadmium and/or
zinc. The family has six predicted transmembrane
domains. Members of the family are variable in length
because of variably sized inserts, often containing
low-complexity sequence [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 268
Score = 28.7 bits (65), Expect = 5.2
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 24/121 (19%)
Query: 114 FLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRR--PL 171
FL + ++ ++R++ I IV + +I+ +L + + G R L
Sbjct: 68 FLVVVALFILYEAIERLI--NPEPEIDGGTML-IVAIVGLIVNLILALYLHRVGHRLGSL 124
Query: 172 LLISD---------ICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGF 222
L + + + IGAL YF D P+A+L I +++ F
Sbjct: 125 ALRAAALHVLSDALSSVGVLIGALLIYFGWHWAD----------PIAALLISLLILYTAF 174
Query: 223 G 223
Sbjct: 175 R 175
>gnl|CDD|236292 PRK08566, PRK08566, DNA-directed RNA polymerase subunit A';
Validated.
Length = 882
Score = 28.7 bits (65), Expect = 6.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 129 RILIATNSKIISPNYGQNIVGFIQ 152
RIL+ I+SP YG I+G IQ
Sbjct: 478 RILMLVQEHILSPRYGGPIIGGIQ 501
>gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and
metabolism].
Length = 395
Score = 28.4 bits (64), Expect = 7.2
Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 29/143 (20%)
Query: 85 QAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNY- 143
A K S+ +++ + + T + +GL L + VI +L ILI + +S
Sbjct: 194 IATKLVSVRKVWRSPLAWQVT-LFMGLQSLLYYI----VIGWLPAILI---DRGLSAAEA 245
Query: 144 --GQNIVGFIQVIMTFFSSLLVDKAG-RRPLLLISDICMAICIGALGYYFYLLKLDEKLV 200
+++ Q+ LL ++ +RPL++++ + M + G +G
Sbjct: 246 GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV--GLVG------------- 290
Query: 201 DGLGLLPVASLAIYIIVFSVGFG 223
L L P ++ ++ +G G
Sbjct: 291 --LLLAPGQLPILWALLLGLGQG 311
>gnl|CDD|184755 PRK14583, hmsR, N-glycosyltransferase; Provisional.
Length = 444
Score = 28.4 bits (63), Expect = 7.7
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 215 IIVFSVGFGPI--PGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDV 269
I ++ +G PG+ + +F P G+ L + C L++F + + R+ P +
Sbjct: 340 ITLYLLGLVITLPPGIHVQSVFPPAFTGMVLALTC----LLQFAISLVIERRYEPKL 392
>gnl|CDD|183067 PRK11272, PRK11272, putative DMT superfamily transporter inner
membrane protein; Provisional.
Length = 292
Score = 27.6 bits (62), Expect = 9.4
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 21/90 (23%)
Query: 207 PVASLAIYIIVFSVGFG-------PIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVK 259
P ++ I I S FG P+P MM + LA GV+ ++ SL+
Sbjct: 149 PWGAILILIASASWAFGSVWSSRLPLPVGMMA----GAAEMLAAGVVLLIASLL------ 198
Query: 260 TVRHRFT--PDVKG-LALGVICILGSLIEF 286
R T P + G LALG + + GS+I
Sbjct: 199 -SGERLTALPTLSGFLALGYLAVFGSIIAI 227
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 28.2 bits (63), Expect = 9.6
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 297 RAFGTGVAFGTFAVYCIIGTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARRTGSASRK 356
R FG + F + FFVY ++ E NK +Q + L + K + +
Sbjct: 670 RNFGIIIGF-------TVFFFFVYILLTEF-NKGAKQKGEILVFRRGSLKRAKKAGETSA 721
Query: 357 STKSNTSAGS 366
S K++ AG
Sbjct: 722 SNKNDIEAGE 731
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.144 0.413
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,526,197
Number of extensions: 2032921
Number of successful extensions: 3435
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3377
Number of HSP's successfully gapped: 173
Length of query: 372
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 274
Effective length of database: 6,590,910
Effective search space: 1805909340
Effective search space used: 1805909340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.8 bits)