RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17630
(372 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 2e-05
Identities = 31/222 (13%), Positives = 75/222 (33%), Gaps = 62/222 (27%)
Query: 7 LYTYVIGSLYEDYTIICLSCLVIP--VLNLL--------VFLIVAPETPVYLLSKKRRKD 56
L +++ ++ S IP +L+L+ V ++V + Y L +K+ K+
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVN-KLHKYSLVEKQPKE 423
Query: 57 AEKSL----LILRGPN---YDIHGEL-------------DELQKELD------I------ 84
+ S+ L L+ Y +H + D + LD I
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 85 --QAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVI---FYLKRIL--IATNSK 137
++ ++ + ++ I S S +N + FY I +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 138 IIS------PNYGQNIV-----GFIQVIMTFFSSLLVDKAGR 168
+++ P +N++ +++ + + ++A +
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Score = 42.1 bits (98), Expect = 2e-04
Identities = 59/400 (14%), Positives = 119/400 (29%), Gaps = 108/400 (27%)
Query: 6 ILYTYVIGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLLILR 65
++ +V L +Y + ++ + P + ++R + + +
Sbjct: 78 MVQKFVEEVLRINYKFL---------MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-- 126
Query: 66 GPNYDI--HGELDELQKELDIQAQKKKSLVEIY----SNKATVKATIVI--VGLLCFLSF 117
Y++ +L++ L ++ + K+++ I S K T A V + C + F
Sbjct: 127 -AKYNVSRLQPYLKLRQAL-LELRPAKNVL-IDGVLGSGK-TWVALDVCLSYKVQCKMDF 182
Query: 118 SGINVVIFYLK--------RILIATNS--KIISPNYGQ------NIVGFIQVIMTFFSSL 161
IF+L +L I PN+ NI I I L
Sbjct: 183 K-----IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 162 LVDKAGRRPLLLISDICMAICIGALGYYFYLLKL--DEKLVDGL---------------G 204
L K LL++ ++ A A +L +++ D L
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 205 LLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALGVICILG-SLIEFVVV-KTVR 262
L P ++ + +P +V + I+ S+ + + +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLP---------REVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 263 HRFTPDVKGLALGVICILGSLIE-FVVVKTFDDVERAFGTGVAFGTF--------AVYCI 313
H + ++IE + V + + F F + +
Sbjct: 349 HVNCDKLT-----------TIIESSLNVLEPAEYRKMF---DRLSVFPPSAHIPTILLSL 394
Query: 314 I----GTFFVYFVVPETKNKSLQQIQDELSGVKKKKKARR 349
I V VV + SL V+K+ K
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSL---------VEKQPKEST 425
Score = 34.4 bits (78), Expect = 0.061
Identities = 52/326 (15%), Positives = 97/326 (29%), Gaps = 103/326 (31%)
Query: 68 NYDI-HGELDELQKELDIQ--------AQKKKSLVEIYSNKATVKATIVIVGLLCFLSFS 118
DI D D + K+ + I +K V T+ + L
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL---SK 74
Query: 119 GINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLL------ 172
+V +++ +L NY F +M+ + + +
Sbjct: 75 QEEMVQKFVEEVL--------RINY-----KF---LMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 173 LISDICMAICIGALGYYF-----YLLKLDEKLVDGLGLLPVASLAIYIIVFSV-GFG--- 223
L +D Y LKL + L L L P A +++ V G G
Sbjct: 119 LYND------NQVFAKYNVSRLQPYLKLRQAL---LELRP----AKNVLIDGVLGSGKTW 165
Query: 224 ---------PIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLA- 273
+ M ++F L L +++E +++ + ++ P+ +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFW-----LNLKNCNSPETVLE--MLQKLLYQIDPNWTSRSD 218
Query: 274 ------LGVICILGSLIEFVVVKTF-------DDVERAFGTGVAFGTFAVYC-IIGTFFV 319
L + I L + K + +V+ A A+ F + C I+ T
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA----KAWNAFNLSCKILLT--- 271
Query: 320 YFVVPETKNKSLQQIQDELSGVKKKK 345
T+ K + D LS
Sbjct: 272 ------TRFKQ---VTDFLSAATTTH 288
Score = 30.2 bits (67), Expect = 1.4
Identities = 37/226 (16%), Positives = 64/226 (28%), Gaps = 69/226 (30%)
Query: 2 VVSGILYTYVI-----GSLYEDYTI-ICLSCLVIPVLNL----------LVFLIVA---- 41
+S T++ +L D + L L +L + +I
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 42 -PETPVYLL---SKKRRKDAEKSLLILRGPNY------------DIH----------GEL 75
T K E SL +L Y H ++
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 76 DELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVIFYLKRILIAT- 134
+ + + K SLVE ++TI I + L N + L R ++
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPK----ESTISIPSIYLELKVKLEN--EYALHRSIVDHY 453
Query: 135 -------NSKIISP---NYGQNIVGF----IQVI--MTFFSSLLVD 164
+ +I P Y + +G I+ MT F + +D
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 2e-05
Identities = 55/265 (20%), Positives = 95/265 (35%), Gaps = 65/265 (24%)
Query: 27 LVIPVLNLLVFLIVA---PETPVYLLSKKRRKDAEK-------SLLILRGPNYD-IHGEL 75
V + +L F I P L +D+ + +L + + + +
Sbjct: 295 SVRKAITVL-FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 76 DELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGL---LCFLSFSGINVVIFYLKRILI 132
++ L Q + SLV N A +V+ G L G+N+ L++
Sbjct: 354 NKTNSHLPAGKQVEISLV----NGAK---NLVVSGPPQSLY-----GLNL---TLRKAKA 398
Query: 133 ATN---SKIISPNYGQNIVG---FIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIGA- 185
+ S+I P + + F+ V F S LLV + L+ + + A
Sbjct: 399 PSGLDQSRI--PFSERKLKFSNRFLPVASPFHSHLLVPAS---DLINKDLVKNNVSFNAK 453
Query: 186 -LG---YYFY----LLKLD----EKLVDGLGLLPV------ASLAIYIIVFSVGFGPIPG 227
+ Y + L L E++VD + LPV A +I+ F G G G
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF--GPGGASG 511
Query: 228 VMMGELFTPDVKGLALGVICILGSL 252
+ G L + G + VI + G+L
Sbjct: 512 L--GVLTHRNKDGTGVRVI-VAGTL 533
Score = 43.9 bits (103), Expect = 8e-05
Identities = 64/371 (17%), Positives = 97/371 (26%), Gaps = 169/371 (45%)
Query: 42 PETPVYLLSK--------------KRRKDAEKSLL------ILRGPNYDIHGELDELQKE 81
P TP L+ K + L L G N DIH +L +E
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG-N-DIHALAAKLLQE 111
Query: 82 LDIQAQKKKSLVEIY------SNKATVK--------------ATIVIVGLLCFLSFSG-- 119
D K K L++ Y + + K A + F G
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL-------VAIFGGQG 164
Query: 120 -INVVIFYLK--RILIATNSKIISPNYGQNIVGFIQVIMTFFSSLL-------------- 162
+ Y + R L T Y + I+ S L+
Sbjct: 165 NTDD---YFEELRDLYQT--------YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 163 -----VDKAGRRP----LL--LISDICMAICIGALGYYFYLLKLDEKLVDGLGLLP---- 207
++ P LL IS C I + L +Y KL LG P
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPIS--CPLIGVIQLAHYVVTAKL-------LGFTPGELR 264
Query: 208 -------------VASLAI----------------YIIVFSVG------FGPI---PGVM 229
V ++AI ++F +G + P ++
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 230 M-----GELF-TP--DVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILG 281
E +P + L ++ V KT H P K + +
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQ-------EQVQDYVNKTNSH--LPAGKQVEI------- 368
Query: 282 SLI----EFVV 288
SL+ VV
Sbjct: 369 SLVNGAKNLVV 379
Score = 40.8 bits (95), Expect = 7e-04
Identities = 42/253 (16%), Positives = 75/253 (29%), Gaps = 77/253 (30%)
Query: 142 NYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICI-----GALGYYFYLLKLD 196
YG +I+ + + + G+R I + A+ G L +++
Sbjct: 1656 TYGFSILDIVINNPVNLTIHFGGEKGKR----IRENYSAMIFETIVDGKLKTEKIFKEIN 1711
Query: 197 EKLVDGL-----GLL-------P---VASLAIYIIVFSVGFGPIPGVMM----GELFTPD 237
E GLL P + A + + S G P GE +
Sbjct: 1712 EHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE-YA-- 1768
Query: 238 VKGLALGVICILGSL-IEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVE 296
AL + + IE +V+ V +R G ++ V + D++
Sbjct: 1769 ----AL--ASLADVMSIE-SLVEVVFYR----------------GMTMQVAVPR--DELG 1803
Query: 297 RAFGTGVAFGTFAVYCIIGTFFVYFVV----PETK--------NKSLQQI--------QD 336
R+ +A V + +VV T N QQ D
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD 1863
Query: 337 ELSGVKKKKKARR 349
++ V K ++
Sbjct: 1864 TVTNVLNFIKLQK 1876
Score = 32.3 bits (73), Expect = 0.28
Identities = 64/418 (15%), Positives = 118/418 (28%), Gaps = 175/418 (41%)
Query: 5 GILYTYV--IGSLYEDYTIICLSCLVIPVLNLLVFLIVAPETPVYLLSKKRRKDAEKSLL 62
G Y + LY+ Y ++ + L+ L LI DAEK +
Sbjct: 164 GNTDDYFEELRDLYQTYHVL-VGDLIKFSAETLSELIRTTL------------DAEK--V 208
Query: 63 ILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLL---CFL---- 115
+G +I L+ D Y + + ++G++ ++
Sbjct: 209 FTQG--LNILEWLENPSNTPDKD----------YLLSIPI--SCPLIGVIQLAHYVVTAK 254
Query: 116 -----------SFSGINVVIFYLKRILIATNSKIIS-----PNYGQNIVGFIQVIMTFF- 158
G + ++ A I+ ++ ++ I V+ FF
Sbjct: 255 LLGFTPGELRSYLKGATGHS---QGLVTAV---AIAETDSWESFFVSVRKAITVL--FFI 306
Query: 159 --------------SSLLVD--KAGR---RPLLLISDICMAICIGALGYYFYLLKLDEK- 198
S+L D + P+L IS++ + L ++
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 199 ---LVDGL------GLLPVASL---AIYI--------------------IVFSVGFGPI- 225
LV+G G P SL + + + FS F P+
Sbjct: 367 EISLVNGAKNLVVSG--PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 226 -P----------GVMMGELFTPDV----KGLALGVIC-------------ILGSLIEFVV 257
P ++ +L +V K + + V I +++ ++
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 258 VKTVR----------H--RFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGV 303
V+ H F P G LG L T + + GTGV
Sbjct: 485 RLPVKWETTTQFKATHILDFGP-------GGASGLGVL-------THRNKD---GTGV 525
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 29.9 bits (67), Expect = 1.6
Identities = 18/135 (13%), Positives = 46/135 (34%), Gaps = 15/135 (11%)
Query: 61 LLILRGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGI 120
+L+ + A K +E++ ++ ++G+ C
Sbjct: 182 VLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQ 241
Query: 121 NVVIFYLKRILIATNSKIISPNYGQNIVGFI-------QVIMTFFSSLLVDKAGRRPLLL 173
F+ S + G + G++ + FF+ L++++ G + LL
Sbjct: 242 QFANFF--------TSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALL 293
Query: 174 ISDICMAICIGALGY 188
++ M++ I +
Sbjct: 294 LAGTIMSVRIIGSSF 308
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 2.2
Identities = 5/19 (26%), Positives = 11/19 (57%), Gaps = 4/19 (21%)
Query: 15 LYEDYT---IICLSC-LVI 29
+ E ++ ++C C LV+
Sbjct: 34 IVERFSEGDVVCALCGLVL 52
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle,
hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Length = 342
Score = 29.0 bits (64), Expect = 2.9
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 70 DIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVG 110
D+HG+ D L L KK+ +++ N A + +V+ G
Sbjct: 78 DVHGQYDVLLTLL-----KKQKIIDSDGNWAFGEGHMVMTG 113
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 28.8 bits (64), Expect = 3.2
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Query: 284 IEFVVVKTFDDVERAFGTGVAFGTFAVYCIIG--TFFVYFVVPETKNKSLQQIQDELSGV 341
++ + V +D + F ++ + + PE K + L+ E V
Sbjct: 383 MDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQV 442
Query: 342 KKKKKARRTGS-ASRKSTKSNTS 363
+ ++ + + RK N S
Sbjct: 443 QLDQETGFSITELQRKQAMLNAS 465
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda,
Ser/Thr protein phosphatase, ppase, manganese, sulfate,
viral protein; 2.15A {Enterobacteria phage lambda}
SCOP: d.159.1.3
Length = 221
Score = 27.5 bits (61), Expect = 6.4
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 70 DIHGELDELQKELD 83
D+HG L +LD
Sbjct: 20 DLHGCYTNLMNKLD 33
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 27.9 bits (62), Expect = 6.5
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 2/90 (2%)
Query: 284 IEFVVVKTFDDVERAFGTGVAFGTFAVYCIIG--TFFVYFVVPETKNKSLQQIQDELSGV 341
++ V +D F ++ + E K + L+ ++E V
Sbjct: 306 MDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMV 365
Query: 342 KKKKKARRTGSASRKSTKSNTSAGSRPSNV 371
++ +K S ++K + T + V
Sbjct: 366 QEDEKIGFEISENQKRQAAMTVRKASKQKV 395
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine
tetraphosphatase, monomer, PSI- 2, protein structure
initiative, nysgrc; 2.05A {Trypanosoma brucei}
Length = 262
Score = 27.7 bits (62), Expect = 6.6
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 60 SLLILRGPNY---DIHGELDELQKELD 83
+L + G DIHG +L+ L
Sbjct: 13 TLPNVTGRVIIVGDIHGCRAQLEDLLR 39
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 27.3 bits (61), Expect = 9.3
Identities = 31/193 (16%), Positives = 55/193 (28%), Gaps = 51/193 (26%)
Query: 153 VIMTFFSSLLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLA 212
+ T + DK R M + A Y+ + P +
Sbjct: 302 IPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW--------------MNPAGNPT 347
Query: 213 IYIIVFSV----GFGPIP--GVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFT 266
+ +I V +GP+ G+ EL G A G + G L
Sbjct: 348 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL-------------- 393
Query: 267 PDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFVYFVVPET 326
G ++ I+G ++ FG F I+ + V+
Sbjct: 394 ----GGSVAASAIVGYTVD------------FFGWDGGFMVMIGGSILAVILLIVVMIG- 436
Query: 327 KNKSLQQIQDELS 339
+ + +Q+ EL
Sbjct: 437 EKRRHEQLLQELV 449
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.144 0.413
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,697,814
Number of extensions: 363879
Number of successful extensions: 907
Number of sequences better than 10.0: 1
Number of HSP's gapped: 903
Number of HSP's successfully gapped: 38
Length of query: 372
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 277
Effective length of database: 4,049,298
Effective search space: 1121655546
Effective search space used: 1121655546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.0 bits)