RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17630
         (372 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 35/272 (12%), Positives = 69/272 (25%), Gaps = 38/272 (13%)

Query: 65  RGPNYDIHGELDELQKELDIQAQKKKSLVEIYSNKATVKATIVIVGLLCFLSFSGINVVI 124
            G       + D      +   Q+  +           K    I     F+      ++ 
Sbjct: 211 CGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD 270

Query: 125 FYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVDKAGRRPLLLISDICMAICIG 184
           +    +    +  +   ++   +  +  +  T     + DK  R          M +   
Sbjct: 271 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 330

Query: 185 ALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGPIPGVMMGELFTPDVKGLALG 244
           A   Y+        +             I I     G   + G+   EL      G A G
Sbjct: 331 ATIVYW--------MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 382

Query: 245 VICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVA 304
              + G L                  G ++    I+G  ++             FG    
Sbjct: 383 FTGLFGYL------------------GGSVAASAIVGYTVD------------FFGWDGG 412

Query: 305 FGTFAVYCIIGTFFVYFVVPETKNKSLQQIQD 336
           F       I+    +  V+   K +  Q +Q+
Sbjct: 413 FMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444



 Score = 32.7 bits (73), Expect = 0.076
 Identities = 17/183 (9%), Positives = 42/183 (22%), Gaps = 1/183 (0%)

Query: 105 TIVIVGLLCFLSFSGINVVIFYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSSLLVD 164
            I +     + ++  +          L+          +  + +        F    + D
Sbjct: 25  QIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSD 84

Query: 165 KAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSVGFGP 224
           ++  R  L    I  A  +  +G+  +       +   L L        +          
Sbjct: 85  RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 144

Query: 225 IPGVMMGELFTPDVKGLALG-VICILGSLIEFVVVKTVRHRFTPDVKGLALGVICILGSL 283
                 G + +       +G  I  L  L+                    L  +     +
Sbjct: 145 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM 204

Query: 284 IEF 286
            + 
Sbjct: 205 RDT 207


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 29/180 (16%), Positives = 50/180 (27%), Gaps = 7/180 (3%)

Query: 105 TIVIVGLLCFLSFSGINVVI----FYLKRILIATNSKIISPNYGQNIVGFIQVIMTFFSS 160
              + GL  F  F  +         +L  I   + S           +    ++      
Sbjct: 8   NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT---GIIFAAISLFSLLFQPLFG 64

Query: 161 LLVDKAGRRPLLLISDICMAICIGALGYYFYLLKLDEKLVDGLGLLPVASLAIYIIVFSV 220
           LL DK G R  LL     M +       + +   L   ++ G  +  +     +      
Sbjct: 65  LLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPA 124

Query: 221 GFGPIPGVMMGELFTPDVKGLALGVICILGSLIEFVVVKTVRHRFTPDVKGLALGVICIL 280
               I  V     F      +   V   LG+ I  ++             G AL +  +L
Sbjct: 125 VEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL 184


>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase
           C-terminal domain {Streptococcus pneumoniae [TaxId:
           1313]}
          Length = 196

 Score = 28.2 bits (62), Expect = 1.1
 Identities = 14/33 (42%), Positives = 15/33 (45%)

Query: 287 VVVKTFDDVERAFGTGVAFGTFAVYCIIGTFFV 319
           VV  TF+D      T     T A Y I  TFFV
Sbjct: 2   VVALTFNDGPNPATTPQVLETLAKYDIKATFFV 34


>d1ku2a2 a.177.1.1 (A:93-272) Sigma factor SigA {Thermus aquaticus
           [TaxId: 271]}
          Length = 180

 Score = 27.5 bits (60), Expect = 2.1
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 8/60 (13%)

Query: 256 VVVKTVRHRFTPDVKGLALGVICILGSLIEFVVVKTFDDVERAFGTGVAFGTFAVYCIIG 315
           +VV   +      +  L L      G +     V+ F+  +R       F T+A + I  
Sbjct: 117 LVVSIAKKYTGRGLSFLDLIQEGNQGLIR---AVEKFEY-KR----RFKFSTYATWWIRQ 168


>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 209

 Score = 26.8 bits (59), Expect = 3.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 204 GLLPVASLAIYIIVFSVGFGPIPGVMMGELF 234
           G+  V       IV +  FGPIPGV +G ++
Sbjct: 1   GMACVGRTTECTIVPANHFGPIPGVPVGTMW 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.144    0.413 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,355,719
Number of extensions: 64229
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 8
Length of query: 372
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 285
Effective length of database: 1,213,086
Effective search space: 345729510
Effective search space used: 345729510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.9 bits)