RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17633
         (99 letters)



>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 184

 Score =  126 bits (319), Expect = 2e-39
 Identities = 48/91 (52%), Positives = 64/91 (70%), Gaps = 2/91 (2%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFP  +V  +GL    +Y +LMDI+  D+ RY++  H S W+VAGKADP  P R+Y+HP
Sbjct: 30  RMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKF--HNSRWMVAGKADPEMPKRMYIHP 87

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSP TG+Q   +VV+F K+KLTNN  DK+G 
Sbjct: 88  DSPATGEQWMSKVVTFHKLKLTNNISDKHGF 118


>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor
           {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 184

 Score =  125 bits (316), Expect = 7e-39
 Identities = 45/91 (49%), Positives = 56/91 (61%), Gaps = 3/91 (3%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFP L+VS +GL P+  Y VL+D V  DN R++Y      W+  GK +P AP  +Y+HP
Sbjct: 30  RMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKY--VNGEWVPGGKPEPQAPSCVYIHP 87

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSP  G    K  VSF KVKLTN  M+  GQ
Sbjct: 88  DSPNFGAHWMKDPVSFSKVKLTNK-MNGGGQ 117


>d2imha1 d.153.1.7 (A:1-229) Hypothetical protein SPO2555
           {Silicibacter pomeroyi [TaxId: 89184]}
          Length = 229

 Score = 26.4 bits (58), Expect = 0.56
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 46  HRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRK 79
             ++ LV     PP  LR+  HPD+P     L +
Sbjct: 162 LSAAMLVLHPDRPPVTLRIDYHPDNPI--GALEQ 193


>d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type
          III [TaxId: 4577]}
          Length = 81

 Score = 25.0 bits (54), Expect = 0.85
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 60 APLRLYMHPDSPF 72
          APL+LY  P SP 
Sbjct: 1  APLKLYGMPLSPN 13


>d2bsza1 d.3.1.5 (A:6-275) Arylamine N-acetyltransferase {Rhizobium
           loti [TaxId: 381]}
          Length = 270

 Score = 25.3 bits (55), Expect = 1.2
 Identities = 6/31 (19%), Positives = 10/31 (32%)

Query: 64  LYMHPDSPFTGDQLRKQVVSFEKVKLTNNEM 94
           L   P S F    +  +     +  L  N +
Sbjct: 191 LSTSPTSHFLSSVIAARAAPDRRYALRGNRL 221


>d1w5ra1 d.3.1.5 (A:3-275) Arylamine N-acetyltransferase
           {Mycobacterium smegmatis [TaxId: 1772]}
          Length = 273

 Score = 25.3 bits (55), Expect = 1.6
 Identities = 6/32 (18%), Positives = 9/32 (28%)

Query: 63  RLYMHPDSPFTGDQLRKQVVSFEKVKLTNNEM 94
            +  HP S F        V    +  L    +
Sbjct: 193 YVSTHPGSHFVTGLTVAVVTDDARYNLRGRNL 224


>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein
          DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 169

 Score = 25.2 bits (54), Expect = 1.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 44 AYHRSSWLVAGKADPPAPLRLYMHPDSPFT 73
             +S WL+ GK D P  + ++  P  P+ 
Sbjct: 22 RMEQSHWLLDGKKDAPVIVYVFADPFCPYC 51


>d1axda2 c.47.1.5 (A:1-80) Class phi GST {Maize (Zea mays), type I
          [TaxId: 4577]}
          Length = 80

 Score = 24.1 bits (52), Expect = 1.8
 Identities = 5/13 (38%), Positives = 7/13 (53%)

Query: 60 APLRLYMHPDSPF 72
          AP++LY    S  
Sbjct: 1  APMKLYGAVMSWN 13


>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB)
           {Escherichia coli [TaxId: 562]}
          Length = 155

 Score = 23.6 bits (50), Expect = 5.1
 Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 1/54 (1%)

Query: 23  PDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADP-PAPLRLYMHPDSPFTGD 75
              +YAV +  V  D+    +    +S L     +  P P       +    G 
Sbjct: 90  TGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGY 143


>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
          [TaxId: 562]}
          Length = 571

 Score = 23.4 bits (50), Expect = 6.4
 Identities = 10/39 (25%), Positives = 12/39 (30%)

Query: 55 KADPPAPLRLYMHPDSPFTGDQLRKQVVSFEKVKLTNNE 93
           A P AP  L          + L       E   LT N+
Sbjct: 20 GAQPTAPGSLKAPDTRNEKLNSLEDVRKGSENYALTTNQ 58


>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 98

 Score = 23.0 bits (49), Expect = 7.0
 Identities = 5/15 (33%), Positives = 7/15 (46%)

Query: 58 PPAPLRLYMHPDSPF 72
          P   +R+Y     PF
Sbjct: 16 PEGSIRIYSMRFCPF 30


>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen
          regulation fragment {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 92

 Score = 22.4 bits (47), Expect = 9.5
 Identities = 4/15 (26%), Positives = 6/15 (40%)

Query: 58 PPAPLRLYMHPDSPF 72
          P     L+ H  +P 
Sbjct: 2  PLEGYTLFSHRSAPN 16


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 385,334
Number of extensions: 16114
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 17
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)