BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17634
(119 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|345480428|ref|XP_001601407.2| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Nasonia vitripennis]
Length = 739
Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats.
Identities = 87/117 (74%), Positives = 101/117 (86%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG +DESPPCY+LQVDE +ILLDCGWDE F DF+KELKRHVH IDAVLL
Sbjct: 1 MTSIIKLHAISGALDESPPCYILQVDELRILLDCGWDEKFDPDFIKELKRHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
SYPD HLGALPY+VGKCGLSCPI+ATIPVYKMGQMFMYD++Q R++ L TL+
Sbjct: 61 SYPDPLHLGALPYLVGKCGLSCPIYATIPVYKMGQMFMYDIYQSRHNMEDFNLFTLD 117
>gi|350400562|ref|XP_003485880.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Bombus impatiens]
Length = 737
Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 83/107 (77%), Positives = 97/107 (90%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQVDE +ILLDCGWDE F +F+KELKRHVH IDAVLL
Sbjct: 1 MTSIIKLHAISGAMDESPPCYILQVDELRILLDCGWDENFDQEFIKELKRHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
SYPD HLGALPY+VGKCGL+CPI+ATIPVYKMGQMFMYD++Q R++
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHN 107
>gi|340713940|ref|XP_003395491.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 1 [Bombus terrestris]
gi|340713942|ref|XP_003395492.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 2 [Bombus terrestris]
Length = 737
Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 83/107 (77%), Positives = 97/107 (90%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQVDE +ILLDCGWDE F +F+KELKRHVH IDAVLL
Sbjct: 1 MTSIIKLHAISGAMDESPPCYILQVDELRILLDCGWDENFDQEFIKELKRHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
SYPD HLGALPY+VGKCGL+CPI+ATIPVYKMGQMFMYD++Q R++
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHN 107
>gi|270010824|gb|EFA07272.1| hypothetical protein TcasGA2_TC014506 [Tribolium castaneum]
Length = 733
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 84/107 (78%), Positives = 97/107 (90%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ +LSG MDESPPCY+LQVDE +ILLDCGWDE F M+ +KE++RHVH IDAVL+
Sbjct: 1 MTSIIKLQALSGAMDESPPCYILQVDEVRILLDCGWDEHFDMEIIKEMRRHVHTIDAVLI 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
SYPDVAHLGALPY+VGK GL+CPI+ATIPVYKMGQMFMYDLFQ Y+
Sbjct: 61 SYPDVAHLGALPYLVGKLGLNCPIYATIPVYKMGQMFMYDLFQSHYN 107
>gi|383852782|ref|XP_003701904.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Megachile rotundata]
Length = 737
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 83/107 (77%), Positives = 97/107 (90%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQVDE +ILLDCGWDE F +F+KELKRHVH IDAVLL
Sbjct: 1 MTSIIKLHAVSGAMDESPPCYILQVDELRILLDCGWDENFDQEFIKELKRHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
SYPD HLGALPY+VGKCGL+CPI+ATIPVYKMGQMFMYD++Q R++
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHN 107
>gi|380025109|ref|XP_003696322.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Apis florea]
Length = 737
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 83/107 (77%), Positives = 97/107 (90%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQVDE +ILLDCGWDE F +F+KELKRHVH IDAVLL
Sbjct: 1 MTSIIKLHAVSGAMDESPPCYILQVDELRILLDCGWDENFDQEFIKELKRHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
SYPD HLGALPY+VGKCGL+CPI+ATIPVYKMGQMFMYD++Q R++
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHN 107
>gi|332028657|gb|EGI68691.1| Putative cleavage and polyadenylation specificity factor subunit 2
[Acromyrmex echinatior]
Length = 737
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 83/107 (77%), Positives = 97/107 (90%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG M+ESPPCY+LQVDE +ILLDCGWDE F DF+KELKRHVH IDAVLL
Sbjct: 1 MTSIIKLHAISGAMNESPPCYILQVDELRILLDCGWDENFDQDFIKELKRHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
SYPD HLGALPY+VGKCGL+CPI+ATIPVYKMGQMFMYD++Q R++
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDIYQSRHN 107
>gi|322783252|gb|EFZ10838.1| hypothetical protein SINV_80021 [Solenopsis invicta]
Length = 737
Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats.
Identities = 82/107 (76%), Positives = 97/107 (90%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG M+ESPPCY+LQVDE +ILLDCGWDE F DF+KELKRHVH IDAVLL
Sbjct: 1 MTSIIKLHAISGAMNESPPCYILQVDELRILLDCGWDENFDQDFIKELKRHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
SYPD HLGALPY+VGKCG++CPI+ATIPVYKMGQMFMYD++Q R++
Sbjct: 61 SYPDPLHLGALPYLVGKCGMNCPIYATIPVYKMGQMFMYDIYQSRHN 107
>gi|307203591|gb|EFN82620.1| Probable cleavage and polyadenylation specificity factor subunit 2
[Harpegnathos saltator]
Length = 685
Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats.
Identities = 83/107 (77%), Positives = 97/107 (90%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQVDE +ILLDCGWDE F DF+KELKRHV+ IDAVLL
Sbjct: 1 MTSIIKLHAISGAMDESPPCYILQVDELRILLDCGWDENFDQDFIKELKRHVNQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
SYPD HLGALPY+VGKCGL+CPI+ATIPVYKMGQMFMYD++Q R++
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHN 107
>gi|328780437|ref|XP_394940.3| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2 [Apis mellifera]
Length = 730
Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats.
Identities = 82/107 (76%), Positives = 97/107 (90%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQVDE +ILLDCGWDE F +F++ELKRHVH IDAVLL
Sbjct: 1 MTSIIKLHAVSGAMDESPPCYILQVDELRILLDCGWDENFDQEFIRELKRHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
SYPD HLGALPY+VGKCGL+CPI+ATIPVYKMGQMFMYD++Q R++
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHN 107
>gi|307189918|gb|EFN74154.1| Probable cleavage and polyadenylation specificity factor subunit 2
[Camponotus floridanus]
Length = 737
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 83/107 (77%), Positives = 97/107 (90%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQVDE +ILLDCGWDE F DF+KELKRHV+ IDAVLL
Sbjct: 1 MTSIIKLHAVSGAMDESPPCYILQVDELRILLDCGWDENFDQDFIKELKRHVNQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
SYPD HLGALPY+VGKCGL+CPI+ATIPVYKMGQMFMYD++Q R++
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHN 107
>gi|157112944|ref|XP_001657690.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108884656|gb|EAT48881.1| AAEL000118-PA [Aedes aegypti]
Length = 744
Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats.
Identities = 83/117 (70%), Positives = 98/117 (83%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQVDE + LLDCGWDE F +F+KELK++VH IDAVLL
Sbjct: 1 MTSIIKLHAISGAMDESPPCYILQVDEVRFLLDCGWDEKFDPNFIKELKKYVHTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
SYPD HLGALPY+VGK GL+CPI+ATIPVYKMGQMFMYDLF Y+ + L TL+
Sbjct: 61 SYPDGLHLGALPYLVGKLGLNCPIYATIPVYKMGQMFMYDLFMSHYNMYDFDLFTLD 117
>gi|390333491|ref|XP_780045.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Strongylocentrotus purpuratus]
Length = 773
Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats.
Identities = 76/107 (71%), Positives = 95/107 (88%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T SG +DESPPCY+LQVDEF+ LLDCGWDE F+M+ ++ LK+H+H +DAVLL
Sbjct: 1 MTSIIKLTPFSGVLDESPPCYMLQVDEFRFLLDCGWDEHFTMENIEGLKKHIHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
SYPD HLGALPY+VGKC L+CPI+AT+PVYKMGQMFMYDL+Q +++
Sbjct: 61 SYPDNLHLGALPYLVGKCNLTCPIYATVPVYKMGQMFMYDLYQSKHN 107
>gi|158290938|ref|XP_312464.4| AGAP002474-PA [Anopheles gambiae str. PEST]
gi|157018137|gb|EAA08192.4| AGAP002474-PA [Anopheles gambiae str. PEST]
Length = 745
Score = 187 bits (474), Expect = 9e-46, Method: Composition-based stats.
Identities = 79/107 (73%), Positives = 94/107 (87%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIKM ++SG MDESPPCY+LQVD+ +ILLDCGWDE F F+KE+K++VH IDAVLL
Sbjct: 1 MTSIIKMHAISGAMDESPPCYILQVDDVRILLDCGWDEKFDQGFIKEIKKYVHTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
SYPD +HLGALPY+VGK GL+CPI+ATIPVYKMGQMFMYD+F Y+
Sbjct: 61 SYPDGSHLGALPYLVGKLGLNCPIYATIPVYKMGQMFMYDMFMSHYN 107
>gi|242021798|ref|XP_002431330.1| Cleavage and polyadenylation specificity factor 100 kDa subunit,
putative [Pediculus humanus corporis]
gi|212516598|gb|EEB18592.1| Cleavage and polyadenylation specificity factor 100 kDa subunit,
putative [Pediculus humanus corporis]
Length = 731
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 82/117 (70%), Positives = 98/117 (83%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK ++SG MDESPPC++LQVDEF+ LLDCGWDE F +++KELK+HV IDAV+L
Sbjct: 1 MTSIIKFQAISGAMDESPPCFILQVDEFRFLLDCGWDEKFDQEYMKELKKHVPLIDAVIL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY+VGKC LSCPI+ATIPVYKMGQMFMYDL+Q RY+ L TL+
Sbjct: 61 SHPDPLHLGALPYLVGKCSLSCPIYATIPVYKMGQMFMYDLYQSRYNMEEFDLFTLD 117
>gi|170046825|ref|XP_001850949.1| cleavage and polyadenylation specificity factor subunit 2 [Culex
quinquefasciatus]
gi|167869453|gb|EDS32836.1| cleavage and polyadenylation specificity factor subunit 2 [Culex
quinquefasciatus]
Length = 747
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 82/117 (70%), Positives = 98/117 (83%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQVDE + LLDCGWDE F +F+KELK++VH IDAVLL
Sbjct: 1 MTSIIKLHAISGAMDESPPCYILQVDEVRFLLDCGWDEKFDPNFIKELKKYVHTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
SYPD HLGALPY+VGK GL+CPI+ATIPVYKMGQMFMYDL+ Y+ + L TL+
Sbjct: 61 SYPDGLHLGALPYLVGKLGLNCPIYATIPVYKMGQMFMYDLYMSHYNMYDFDLFTLD 117
>gi|195109795|ref|XP_001999467.1| GI23051 [Drosophila mojavensis]
gi|193916061|gb|EDW14928.1| GI23051 [Drosophila mojavensis]
Length = 754
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 78/117 (66%), Positives = 99/117 (84%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQ+D+ +ILLDCGWDE F +F+KELKR VH +DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDPNFIKELKRQVHTLDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PDV HLGALPY+VGK GL+CPI+ATIPV+KMGQMFMYDL+ ++ + L +L+
Sbjct: 61 SHPDVYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMYDFDLFSLD 117
>gi|312375001|gb|EFR22454.1| hypothetical protein AND_15244 [Anopheles darlingi]
Length = 772
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 77/107 (71%), Positives = 93/107 (86%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQVD+ + LLDCGWDE F F+KE+K++VH IDAVLL
Sbjct: 1 MTSIIKLHAVSGAMDESPPCYILQVDDVRFLLDCGWDEKFDQVFIKEIKKYVHTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
SYPD +HLGALPY+VGK GL+CPI+ATIPVYKMGQMFMYD+F Y+
Sbjct: 61 SYPDGSHLGALPYLVGKLGLNCPIYATIPVYKMGQMFMYDMFMSHYN 107
>gi|196012036|ref|XP_002115881.1| hypothetical protein TRIADDRAFT_30006 [Trichoplax adhaerens]
gi|190581657|gb|EDV21733.1| hypothetical protein TRIADDRAFT_30006 [Trichoplax adhaerens]
Length = 745
Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 77/107 (71%), Positives = 90/107 (84%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSII+MT LSG DE PPCYLLQVDEF LLDCGWDE F M+ ++ +KRH+H IDAVLL
Sbjct: 1 MTSIIRMTVLSGGQDEGPPCYLLQVDEFNFLLDCGWDENFDMEMMERVKRHIHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD+ HLGA+PY+VGKC L CPI+AT+PV+KMGQMFMYDLF R D
Sbjct: 61 SHPDLLHLGAIPYLVGKCQLKCPIYATVPVHKMGQMFMYDLFLSRND 107
>gi|195392300|ref|XP_002054797.1| GJ24636 [Drosophila virilis]
gi|194152883|gb|EDW68317.1| GJ24636 [Drosophila virilis]
Length = 693
Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 77/117 (65%), Positives = 98/117 (83%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQ+D+ +ILLDCGWDE F +F+KELKR VH +DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDPNFIKELKRQVHTLDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY+VGK GL+CPI+ATIPV+KMGQMFMYDL+ ++ + L +L+
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMYDFDLFSLD 117
>gi|195054718|ref|XP_001994270.1| GH10247 [Drosophila grimshawi]
gi|193896140|gb|EDV95006.1| GH10247 [Drosophila grimshawi]
Length = 754
Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 77/117 (65%), Positives = 98/117 (83%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQ+D+ +ILLDCGWDE F +F+KELKR VH +DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDPNFIKELKRQVHTLDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY+VGK GL+CPI+ATIPV+KMGQMFMYDL+ ++ + L +L+
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMYDFDLFSLD 117
>gi|357610700|gb|EHJ67102.1| putative cleavage and polyadenylation specificity factor 100 kDa
subunit [Danaus plexippus]
Length = 818
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 79/103 (76%), Positives = 89/103 (86%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK LSG DESPPCY+LQVDEFK LLDCGWDE F MDF+KELKRHV+ IDAVLL
Sbjct: 1 MTSIIKFHCLSGAGDESPPCYVLQVDEFKFLLDCGWDEKFDMDFIKELKRHVNSIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQ 103
S+ D HLGALPY VG+ GL+CPI+AT+P+YKMGQMFMYDL+Q
Sbjct: 61 SHSDPLHLGALPYAVGQLGLNCPIYATLPIYKMGQMFMYDLYQ 103
>gi|50539828|ref|NP_001002384.1| cleavage and polyadenylation specificity factor subunit 2 [Danio
rerio]
gi|49903850|gb|AAH76029.1| Cleavage and polyadenylation specific factor 2 [Danio rerio]
Length = 790
Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + LKR+VH +DAVLL
Sbjct: 1 MTSIIKLTALSGVQEESALCYLLQVDEFRFLLDCGWDETFSMDIIDSLKRYVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDHVHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|21358013|ref|NP_651658.1| cleavage and polyadenylation specificity factor 100, isoform A
[Drosophila melanogaster]
gi|18203548|sp|Q9V3D6.1|CPSF2_DROME RecName: Full=Probable cleavage and polyadenylation specificity
factor subunit 2; AltName: Full=Cleavage and
polyadenylation specificity factor 100 kDa subunit;
Short=CPSF 100 kDa subunit
gi|5679134|gb|AAD46873.1|AF160933_1 LD14168p [Drosophila melanogaster]
gi|7301732|gb|AAF56844.1| cleavage and polyadenylation specificity factor 100, isoform A
[Drosophila melanogaster]
Length = 756
Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats.
Identities = 75/107 (70%), Positives = 93/107 (86%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQ+D+ +ILLDCGWDE F +F+KELKR VH +DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLGALPY+VGK GL+CPI+ATIPV+KMGQMFMYDL+ ++
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFN 107
>gi|198452192|ref|XP_002137430.1| GA26549 [Drosophila pseudoobscura pseudoobscura]
gi|198131825|gb|EDY67988.1| GA26549 [Drosophila pseudoobscura pseudoobscura]
Length = 757
Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats.
Identities = 75/107 (70%), Positives = 93/107 (86%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQ+D+ +ILLDCGWDE F +F+KELKR VH +DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLGALPY+VGK GL+CPI+ATIPV+KMGQMFMYDL+ ++
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFN 107
>gi|195503417|ref|XP_002098643.1| GE26465, isoform A [Drosophila yakuba]
gi|194184744|gb|EDW98355.1| GE26465, isoform A [Drosophila yakuba]
Length = 756
Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats.
Identities = 75/107 (70%), Positives = 93/107 (86%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQ+D+ +ILLDCGWDE F +F+KELKR VH +DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLGALPY+VGK GL+CPI+ATIPV+KMGQMFMYDL+ ++
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFN 107
>gi|195341087|ref|XP_002037143.1| GM12754 [Drosophila sechellia]
gi|194131259|gb|EDW53302.1| GM12754 [Drosophila sechellia]
Length = 743
Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats.
Identities = 75/107 (70%), Positives = 93/107 (86%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQ+D+ +ILLDCGWDE F +F+KELKR VH +DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLGALPY+VGK GL+CPI+ATIPV+KMGQMFMYDL+ ++
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFN 107
>gi|194906654|ref|XP_001981406.1| GG11633 [Drosophila erecta]
gi|190656044|gb|EDV53276.1| GG11633 [Drosophila erecta]
Length = 756
Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats.
Identities = 75/107 (70%), Positives = 93/107 (86%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQ+D+ +ILLDCGWDE F +F+KELKR VH +DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLGALPY+VGK GL+CPI+ATIPV+KMGQMFMYDL+ ++
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFN 107
>gi|195503420|ref|XP_002098644.1| GE26465, isoform B [Drosophila yakuba]
gi|194184745|gb|EDW98356.1| GE26465, isoform B [Drosophila yakuba]
Length = 548
Score = 181 bits (458), Expect = 6e-44, Method: Composition-based stats.
Identities = 75/107 (70%), Positives = 93/107 (86%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQ+D+ +ILLDCGWDE F +F+KELKR VH +DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLGALPY+VGK GL+CPI+ATIPV+KMGQMFMYDL+ ++
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFN 107
>gi|194745794|ref|XP_001955372.1| GF16269 [Drosophila ananassae]
gi|190628409|gb|EDV43933.1| GF16269 [Drosophila ananassae]
Length = 756
Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats.
Identities = 75/107 (70%), Positives = 93/107 (86%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQ+D+ +ILLDCGWDE F +F+KELKR VH +DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDPNFIKELKRQVHTLDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLGALPY+VGK GL+CPI+ATIPV+KMGQMFMYDL+ ++
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFN 107
>gi|395827898|ref|XP_003787126.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Otolemur garnettii]
Length = 750
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|328722057|ref|XP_001949295.2| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Acyrthosiphon pisum]
Length = 724
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 77/103 (74%), Positives = 90/103 (87%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK +LSG +ESPPCYLLQ+DEFK LLDCGWDE+FSM V +LKR++H IDAVLL
Sbjct: 1 MTSIIKFYTLSGAHNESPPCYLLQIDEFKFLLDCGWDELFSMGVVNKLKRYIHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQ 103
S+PD HLG LPY+VGKCGL+CP++ATIPVY+MGQMFMYDL Q
Sbjct: 61 SHPDRFHLGILPYLVGKCGLNCPVYATIPVYQMGQMFMYDLHQ 103
>gi|195449222|ref|XP_002071979.1| GK22564 [Drosophila willistoni]
gi|194168064|gb|EDW82965.1| GK22564 [Drosophila willistoni]
Length = 757
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 93/107 (86%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQ+D+ +ILLDCGWDE F +F+++LKR VH +DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIRDLKRQVHTLDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLGALPY+VGK GL+CPI+ATIPV+KMGQMFMYDL+ ++
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFN 107
>gi|193676458|ref|XP_001951701.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Acyrthosiphon pisum]
Length = 729
Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats.
Identities = 77/103 (74%), Positives = 89/103 (86%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK +LSG +ESPPCYLLQ+DEFK LLDCGWDE FSM V +LKR++H IDAVLL
Sbjct: 1 MTSIIKFYTLSGAHNESPPCYLLQIDEFKFLLDCGWDERFSMGVVNKLKRYIHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQ 103
S+PD HLG LPY+VGKCGL+CP++ATIPVY+MGQMFMYDL Q
Sbjct: 61 SHPDRFHLGILPYLVGKCGLNCPVYATIPVYQMGQMFMYDLHQ 103
>gi|432944969|ref|XP_004083472.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Oryzias latipes]
Length = 787
Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 80/117 (68%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T++SG +ES CYLLQVDEF+ILLDCGWDE FSMD + +KR+VH +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEESALCYLLQVDEFRILLDCGWDEHFSMDIIDAMKRYVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R ++ L TL+
Sbjct: 61 SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLD 117
>gi|119601889|gb|EAW81483.1| cleavage and polyadenylation specific factor 2, 100kDa, isoform
CRA_c [Homo sapiens]
Length = 690
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|326920924|ref|XP_003206716.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Meleagris gallopavo]
Length = 782
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + LK+HVH +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLKKHVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|149531954|ref|XP_001507374.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Ornithorhynchus anatinus]
Length = 782
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + LK+HVH +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLKKHVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|71894931|ref|NP_001026379.1| cleavage and polyadenylation specificity factor subunit 2 [Gallus
gallus]
gi|60098929|emb|CAH65295.1| hypothetical protein RCJMB04_15m16 [Gallus gallus]
Length = 782
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + LK+HVH +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLKKHVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|344274144|ref|XP_003408878.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Loxodonta africana]
Length = 782
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|340370496|ref|XP_003383782.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Amphimedon queenslandica]
Length = 730
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 76/108 (70%), Positives = 91/108 (84%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK T+LSG E PPCYLLQVDEF LLDCGWDE FS + + +K+H+H IDAVLL
Sbjct: 1 MTSIIKFTALSGAKGEGPPCYLLQVDEFCFLLDCGWDEFFSPEIAENIKKHIHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDT 108
S+PDV HLGALPY+VG+ GL CP++ATIPVYKMGQMFMYDL+Q R+++
Sbjct: 61 SHPDVVHLGALPYVVGRLGLRCPVYATIPVYKMGQMFMYDLYQARHNS 108
>gi|149737455|ref|XP_001497134.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 1 [Equus caballus]
Length = 782
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|291406601|ref|XP_002719640.1| PREDICTED: cleavage and polyadenylation specific factor 2
[Oryctolagus cuniculus]
Length = 782
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|34101288|ref|NP_059133.1| cleavage and polyadenylation specificity factor subunit 2 [Homo
sapiens]
gi|114654441|ref|XP_001147277.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 3 [Pan troglodytes]
gi|397525769|ref|XP_003832826.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Pan paniscus]
gi|51338827|sp|Q9P2I0.2|CPSF2_HUMAN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|119601886|gb|EAW81480.1| cleavage and polyadenylation specific factor 2, 100kDa, isoform
CRA_a [Homo sapiens]
gi|119601888|gb|EAW81482.1| cleavage and polyadenylation specific factor 2, 100kDa, isoform
CRA_a [Homo sapiens]
gi|193786082|dbj|BAG50953.1| unnamed protein product [Homo sapiens]
gi|410221574|gb|JAA08006.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410221576|gb|JAA08007.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410221578|gb|JAA08008.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410252002|gb|JAA13968.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410307320|gb|JAA32260.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410307322|gb|JAA32261.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339303|gb|JAA38598.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339305|gb|JAA38599.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339307|gb|JAA38600.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339309|gb|JAA38601.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339311|gb|JAA38602.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
Length = 782
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|332223568|ref|XP_003260944.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Nomascus leucogenys]
Length = 782
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|28461235|ref|NP_787002.1| cleavage and polyadenylation specificity factor subunit 2 [Bos
taurus]
gi|426248504|ref|XP_004018003.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Ovis aries]
gi|1706103|sp|Q10568.1|CPSF2_BOVIN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|599683|emb|CAA53535.1| Cleavage and Polyadenylation specificity factor (CPSF) 100kD
subunit [Bos taurus]
gi|296475169|tpg|DAA17284.1| TPA: cleavage and polyadenylation specificity factor subunit 2 [Bos
taurus]
gi|440892550|gb|ELR45701.1| Cleavage and polyadenylation specificity factor subunit 2 [Bos
grunniens mutus]
Length = 782
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|351699560|gb|EHB02479.1| Cleavage and polyadenylation specificity factor subunit 2
[Heterocephalus glaber]
Length = 782
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|383872268|ref|NP_001244509.1| cleavage and polyadenylation specificity factor subunit 2 [Macaca
mulatta]
gi|402876992|ref|XP_003902228.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Papio anubis]
gi|355693514|gb|EHH28117.1| hypothetical protein EGK_18472 [Macaca mulatta]
gi|355778801|gb|EHH63837.1| hypothetical protein EGM_16889 [Macaca fascicularis]
gi|380783537|gb|AFE63644.1| cleavage and polyadenylation specificity factor subunit 2 [Macaca
mulatta]
gi|383412079|gb|AFH29253.1| cleavage and polyadenylation specificity factor subunit 2 [Macaca
mulatta]
gi|384942144|gb|AFI34677.1| cleavage and polyadenylation specificity factor subunit 2 [Macaca
mulatta]
Length = 782
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|348553776|ref|XP_003462702.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Cavia porcellus]
Length = 782
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|296215760|ref|XP_002754257.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Callithrix jacchus]
gi|403298149|ref|XP_003939897.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Saimiri boliviensis boliviensis]
Length = 782
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|456753050|gb|JAA74086.1| cleavage and polyadenylation specific factor 2, 100kDa [Sus scrofa]
Length = 782
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|47125306|gb|AAH70095.1| Cleavage and polyadenylation specific factor 2, 100kDa [Homo
sapiens]
Length = 782
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|431839217|gb|ELK01144.1| Cleavage and polyadenylation specificity factor subunit 2 [Pteropus
alecto]
Length = 782
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|73962293|ref|XP_537353.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Canis lupus familiaris]
Length = 782
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|355680846|gb|AER96660.1| cleavage and polyadenylation specific factor 2, 100kDa [Mustela
putorius furo]
Length = 569
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|432115811|gb|ELK36959.1| Cleavage and polyadenylation specificity factor subunit 2 [Myotis
davidii]
Length = 687
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|327259138|ref|XP_003214395.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Anolis carolinensis]
Length = 783
Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKHVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|224051637|ref|XP_002200593.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Taeniopygia guttata]
Length = 782
Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKHVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|223648270|gb|ACN10893.1| Cleavage and polyadenylation specificity factor subunit 2 [Salmo
salar]
Length = 796
Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T++SG +ES CYLLQVDEF+ LLDCGWDE FSMD + +KR+VH +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDSMKRYVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+CPI+ATIPVYKMGQMFMYDL+Q R +T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCPIYATIPVYKMGQMFMYDLYQSRNNTEDFNLFTLD 117
>gi|449280731|gb|EMC87967.1| Cleavage and polyadenylation specificity factor subunit 2 [Columba
livia]
Length = 782
Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKHVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|126282067|ref|XP_001365312.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Monodelphis domestica]
Length = 782
Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|395503674|ref|XP_003756188.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Sarcophilus harrisii]
Length = 782
Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|193786016|dbj|BAG50992.1| unnamed protein product [Homo sapiens]
Length = 644
Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|387015290|gb|AFJ49764.1| Cleavage and polyadenylation specificity factor subunit 2-like
[Crotalus adamanteus]
Length = 783
Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKHVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|403298151|ref|XP_003939898.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 2 [Saimiri boliviensis boliviensis]
Length = 648
Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|213514628|ref|NP_001134023.1| cleavage and polyadenylation specificity factor subunit 2 [Salmo
salar]
gi|209156194|gb|ACI34329.1| Cleavage and polyadenylation specificity factor subunit 2 [Salmo
salar]
Length = 796
Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T++SG +ES CYLLQVDEF+ LLDCGWDE FSMD + +KR+VH +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDAMKRYVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+CPI+ATIPVYKMGQMFMYDL+Q R +T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCPIYATIPVYKMGQMFMYDLYQSRNNTEDFNLFTLD 117
>gi|350587145|ref|XP_001926907.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Sus scrofa]
Length = 438
Score = 174 bits (441), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|444714932|gb|ELW55806.1| Cleavage and polyadenylation specificity factor subunit 2 [Tupaia
chinensis]
Length = 723
Score = 174 bits (441), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALP+ VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|354494117|ref|XP_003509185.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Cricetulus griseus]
Length = 782
Score = 174 bits (440), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALP+ VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|443725188|gb|ELU12868.1| hypothetical protein CAPTEDRAFT_155355 [Capitella teleta]
Length = 728
Score = 174 bits (440), Expect = 9e-42, Method: Composition-based stats.
Identities = 73/108 (67%), Positives = 89/108 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ SG ESPPCY+LQVDEF LLDCGWDE F F++ LK+H+ IDAVLL
Sbjct: 1 MTSIIKLQPFSGVDGESPPCYMLQVDEFHFLLDCGWDEEFDPVFMENLKKHLPQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDT 108
SYPD HLGALPY+VGKCG++CPI++T+PVYKMGQMFMYDL+Q +++
Sbjct: 61 SYPDPQHLGALPYLVGKCGMTCPIYSTLPVYKMGQMFMYDLYQSHHNS 108
>gi|417404575|gb|JAA49034.1| Putative mrna cleavage and polyadenylation factor ii complex
subunit cft2 cpsf subunit [Desmodus rotundus]
Length = 782
Score = 174 bits (440), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALP+ VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|348517622|ref|XP_003446332.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Oreochromis niloticus]
Length = 787
Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats.
Identities = 78/117 (66%), Positives = 95/117 (81%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T++SG +E+ CYLLQVDEF+ LLDCGWDE FSM+ + +KRHVH +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEETALCYLLQVDEFRFLLDCGWDENFSMEIIDVMKRHVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R ++ L TL+
Sbjct: 61 SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLD 117
>gi|344253621|gb|EGW09725.1| Sodium/potassium/calcium exchanger 4 [Cricetulus griseus]
Length = 1206
Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALP+ VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|26344199|dbj|BAC35756.1| unnamed protein product [Mus musculus]
Length = 296
Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/117 (68%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FS+D + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALP+ VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|195145328|ref|XP_002013648.1| GL24247 [Drosophila persimilis]
gi|194102591|gb|EDW24634.1| GL24247 [Drosophila persimilis]
Length = 154
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 76/107 (71%), Positives = 93/107 (86%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQ+D+ +ILLDCGWDE F +F+KELKR VH +DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLGALPY+VGK GL+CPIFATIPV+KMGQMFMYDL+ ++
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIFATIPVFKMGQMFMYDLYMSHFN 107
>gi|157822735|ref|NP_001100223.1| cleavage and polyadenylation specificity factor subunit 2 [Rattus
norvegicus]
gi|149025374|gb|EDL81741.1| cleavage and polyadenylation specific factor 2 (predicted) [Rattus
norvegicus]
Length = 782
Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/117 (68%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FS+D + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALP+ VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|74188762|dbj|BAE28111.1| unnamed protein product [Mus musculus]
Length = 412
Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/117 (68%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FS+D + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALP+ VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|8393762|ref|NP_058552.1| cleavage and polyadenylation specificity factor subunit 2 [Mus
musculus]
gi|18202027|sp|O35218.1|CPSF2_MOUSE RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|2331036|gb|AAB66830.1| cleavage and polyadenylation specificity factor [Mus musculus]
gi|15489017|gb|AAH13628.1| Cleavage and polyadenylation specific factor 2 [Mus musculus]
gi|148686924|gb|EDL18871.1| cleavage and polyadenylation specific factor 2 [Mus musculus]
Length = 782
Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/117 (68%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FS+D + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALP+ VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|74194185|dbj|BAE24650.1| unnamed protein product [Mus musculus]
Length = 396
Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/117 (68%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FS+D + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALP+ VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|74183852|dbj|BAE24504.1| unnamed protein product [Mus musculus]
Length = 493
Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/117 (68%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FS+D + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALP+ VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>gi|339247939|ref|XP_003375603.1| cleavage and polyadenylation specificity factor subunit 2
[Trichinella spiralis]
gi|316971010|gb|EFV54853.1| cleavage and polyadenylation specificity factor subunit 2
[Trichinella spiralis]
Length = 1188
Score = 171 bits (432), Expect = 7e-41, Method: Composition-based stats.
Identities = 68/103 (66%), Positives = 88/103 (85%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTS+I+ +LSG MD+SPPCY+L+V EF +LDCGWD F+MDF++ ++ IDAVLL
Sbjct: 1 MTSLIRFEALSGVMDDSPPCYVLEVGEFHFMLDCGWDSSFNMDFIERAQKWAPRIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQ 103
SYPD+AH+GALPY+VGKCGLSCPI+AT+PVY+MGQMF+YD +Q
Sbjct: 61 SYPDIAHIGALPYLVGKCGLSCPIYATVPVYRMGQMFLYDWYQ 103
>gi|410916717|ref|XP_003971833.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Takifugu rubripes]
Length = 787
Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 95/117 (81%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T++SG +ES CYLLQVDEF+ LLDCGWDE FSMD + +KR+VH +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R ++ L TL+
Sbjct: 61 SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLD 117
>gi|47224566|emb|CAG03550.1| unnamed protein product [Tetraodon nigroviridis]
Length = 765
Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 95/117 (81%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T++SG +ES CYLLQVDEF+ LLDCGWDE FSMD + +KR+VH +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R ++ L TL+
Sbjct: 61 SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLD 117
>gi|187608214|ref|NP_001120452.1| cleavage and polyadenylation specific factor 2, 100kDa [Xenopus
(Silurana) tropicalis]
gi|170285004|gb|AAI61233.1| LOC100145546 protein [Xenopus (Silurana) tropicalis]
Length = 783
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 92/108 (85%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+L+G +ES CYLLQVDEF+ LLDCGWDE FSMD + +K++VH +DAVLL
Sbjct: 1 MTSIIKLTTLAGAQEESAVCYLLQVDEFRFLLDCGWDENFSMDIIDSVKKYVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDT 108
S+PD HLGALPY VGK GL+C I++TIPVYKMGQMFMYDL+Q R++T
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYSTIPVYKMGQMFMYDLYQSRHNT 108
>gi|449670960|ref|XP_004207395.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Hydra magnipapillata]
Length = 105
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 87/105 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSII+ T LSG DE P CYLLQVDEFK LLDCGWDE S D ++ +KRH H IDAVLL
Sbjct: 1 MTSIIRFTPLSGAQDEGPLCYLLQVDEFKFLLDCGWDENLSQDVIENIKRHAHSIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
S+PD+ HLGALPY++GKC L+CP++ATIPVYKMGQMF+YD +QV
Sbjct: 61 SHPDIYHLGALPYLIGKCNLNCPVYATIPVYKMGQMFLYDFYQVN 105
>gi|147901518|ref|NP_001081123.1| cleavage and polyadenylation specificity factor subunit 2 [Xenopus
laevis]
gi|18203567|sp|Q9W799.1|CPSF2_XENLA RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|4927240|gb|AAD33061.1|AF139986_1 cleavage and polyadenylation specificity factor 100 kDa subunit
[Xenopus laevis]
Length = 783
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/108 (70%), Positives = 91/108 (84%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+L G +ES CYLLQVDEF+ LLDCGWDE FSMD + +K++VH +DAVLL
Sbjct: 1 MTSIIKLTTLVGAQEESAVCYLLQVDEFRFLLDCGWDENFSMDIIDSVKKYVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDT 108
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNT 108
>gi|156399337|ref|XP_001638458.1| predicted protein [Nematostella vectensis]
gi|156225579|gb|EDO46395.1| predicted protein [Nematostella vectensis]
Length = 737
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 69/108 (63%), Positives = 87/108 (80%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ LSG DE+P CYLLQVDEF+ LLDCGW+E M+ ++ +KRHV +DAVL+
Sbjct: 1 MTSIIKLNVLSGAHDEAPLCYLLQVDEFRFLLDCGWNETLDMEIMESIKRHVQQVDAVLV 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDT 108
S+PD+ H+G LPY+VGKCGL CPI+ TIPVYKMGQMFMYD +Q ++
Sbjct: 61 SFPDIYHMGGLPYLVGKCGLHCPIYTTIPVYKMGQMFMYDWYQCHQNS 108
>gi|47224568|emb|CAG03552.1| unnamed protein product [Tetraodon nigroviridis]
Length = 206
Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 95/117 (81%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T++SG +ES CYLLQVDEF+ LLDCGWDE FSMD + +KR+VH +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R ++ L TL+
Sbjct: 61 SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLD 117
>gi|321462132|gb|EFX73157.1| hypothetical protein DAPPUDRAFT_58164 [Daphnia pulex]
Length = 735
Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 72/105 (68%), Positives = 86/105 (81%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK +LSG +D+SP YLL+VD+F LLDCGWDE S F+ ELK+HV+ IDAVLL
Sbjct: 1 MTSIIKFCALSGALDDSPHSYLLKVDDFTFLLDCGWDEKCSEGFIHELKKHVNKIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
SYPD HLGALPY VGK GL+CP++AT+PVYKMGQMFMYD +Q +
Sbjct: 61 SYPDQLHLGALPYAVGKLGLTCPVYATVPVYKMGQMFMYDWYQSK 105
>gi|198428144|ref|XP_002129804.1| PREDICTED: similar to cleavage and polyadenylation specific factor
2 [Ciona intestinalis]
Length = 784
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 64/107 (59%), Positives = 85/107 (79%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK T L+G ++E P CYLLQVDEF LLDCGW E F MD + + +H+ +DA+LL
Sbjct: 1 MTSIIKFTPLAGALNEGPNCYLLQVDEFTFLLDCGWSEDFDMDVINNVMKHISQVDAMLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
++PD+ H+GALPY+ GK GL+C I+AT+PVYKMGQMF+YDL+Q ++
Sbjct: 61 TFPDIQHIGALPYLAGKIGLNCAIYATVPVYKMGQMFLYDLYQSHHN 107
>gi|281344001|gb|EFB19585.1| hypothetical protein PANDA_019064 [Ailuropoda melanoleuca]
Length = 237
Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 89/114 (78%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYP 63
+ + +L T +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLLS+P
Sbjct: 59 LFSLLNLDSTREESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLLSHP 118
Query: 64 DVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
D HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 119 DPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 172
>gi|402591052|gb|EJW84982.1| cleavage and polyadenylation specificity factor subunit 2
[Wuchereria bancrofti]
Length = 809
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 67/100 (67%), Positives = 82/100 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ +LSG D+ P CYLLQVD+ LLDCGWDE F M +++ +KR V I+AVLL
Sbjct: 1 MTSIIKLEALSGVQDDGPLCYLLQVDQVYFLLDCGWDERFDMAYIEAVKRRVPLINAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
SY D+ HLGALPY+V KCGL+CPI+AT+PVYKMGQMF+YD
Sbjct: 61 SYADIPHLGALPYLVRKCGLNCPIYATVPVYKMGQMFLYD 100
>gi|393910520|gb|EJD75913.1| cleavage and polyadenylation specificity factor subunit 2, variant
[Loa loa]
Length = 664
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 67/100 (67%), Positives = 82/100 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ +LSG D+ P CYLLQVD+ LLDCGWDE F M +++ +KR V I+AVLL
Sbjct: 1 MTSIIKLEALSGVQDDGPLCYLLQVDQVYFLLDCGWDERFDMAYIEAVKRRVPLINAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
SY D+ HLGALPY+V KCGL+CPI+AT+PVYKMGQMF+YD
Sbjct: 61 SYADIPHLGALPYLVRKCGLNCPIYATVPVYKMGQMFLYD 100
>gi|393910519|gb|EFO19846.2| cleavage and polyadenylation specificity factor subunit 2 [Loa loa]
Length = 828
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 67/100 (67%), Positives = 82/100 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ +LSG D+ P CYLLQVD+ LLDCGWDE F M +++ +KR V I+AVLL
Sbjct: 1 MTSIIKLEALSGVQDDGPLCYLLQVDQVYFLLDCGWDERFDMAYIEAVKRRVPLINAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
SY D+ HLGALPY+V KCGL+CPI+AT+PVYKMGQMF+YD
Sbjct: 61 SYADIPHLGALPYLVRKCGLNCPIYATVPVYKMGQMFLYD 100
>gi|312084310|ref|XP_003144223.1| cleavage and polyadenylation specificity factor subunit 2 [Loa loa]
Length = 837
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 67/100 (67%), Positives = 82/100 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ +LSG D+ P CYLLQVD+ LLDCGWDE F M +++ +KR V I+AVLL
Sbjct: 1 MTSIIKLEALSGVQDDGPLCYLLQVDQVYFLLDCGWDERFDMAYIEAVKRRVPLINAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
SY D+ HLGALPY+V KCGL+CPI+AT+PVYKMGQMF+YD
Sbjct: 61 SYADIPHLGALPYLVRKCGLNCPIYATVPVYKMGQMFLYD 100
>gi|170581110|ref|XP_001895540.1| cleavage and polyadenylation specificity factor [Brugia malayi]
gi|158597460|gb|EDP35606.1| cleavage and polyadenylation specificity factor, putative [Brugia
malayi]
Length = 831
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 67/100 (67%), Positives = 82/100 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ +LSG D+ P CYLLQVD+ LLDCGWDE F M +++ +KR V I+AVLL
Sbjct: 1 MTSIIKLEALSGVQDDGPLCYLLQVDQVYFLLDCGWDERFDMAYIEAVKRRVPLINAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
SY D+ HLGALPY+V KCGL+CPI+AT+PVYKMGQMF+YD
Sbjct: 61 SYADIPHLGALPYLVRKCGLNCPIYATVPVYKMGQMFLYD 100
>gi|324503279|gb|ADY41427.1| Cleavage and polyadenylation specificity factor subunit 2 [Ascaris
suum]
Length = 841
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 66/100 (66%), Positives = 82/100 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ +LSG D+ P CYLLQVD+ LLDCGWDE F M +++ +KR V I+AVLL
Sbjct: 1 MTSIIKLEALSGVQDDGPLCYLLQVDQVFFLLDCGWDERFDMAYIEAVKRRVPQINAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
SY D+ HLGALPY+V KCG++CPI+AT+PVYKMGQMF+YD
Sbjct: 61 SYADILHLGALPYLVRKCGMNCPIYATVPVYKMGQMFLYD 100
>gi|256077070|ref|XP_002574831.1| cleavage and polyadenylation specificity factor [Schistosoma
mansoni]
Length = 928
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 67/105 (63%), Positives = 80/105 (76%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
TSIIK+ +LSG D PCYLLQVDEF LLDCGW E D+VKE+ + H+DAVLLS
Sbjct: 3 TSIIKLHTLSGAGDNGSPCYLLQVDEFHCLLDCGWCEKLDSDYVKEVSKWAKHVDAVLLS 62
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
+ + HLG LPY+VG CGL+CP++AT PVYKMGQMFMYD FQ R+
Sbjct: 63 HQSLRHLGLLPYLVGTCGLNCPVYATTPVYKMGQMFMYDFFQSRH 107
>gi|341883504|gb|EGT39439.1| CBN-CPSF-2 protein [Caenorhabditis brenneri]
Length = 822
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/107 (60%), Positives = 78/107 (72%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ SG DE P CYLLQVD ILLDCGWDE F + + +ELK + I AVL+
Sbjct: 1 MTSIIKLKVFSGAKDEGPLCYLLQVDSDYILLDCGWDERFELKYFEELKPFIPKISAVLI 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLG LPY+V KCGL+ P++AT+PVYKMGQMF+YDL D
Sbjct: 61 SHPDPLHLGGLPYLVAKCGLTAPVYATVPVYKMGQMFIYDLVYSHLD 107
>gi|229553940|sp|A8XUS3.2|CPSF2_CAEBR RecName: Full=Probable cleavage and polyadenylation specificity
factor subunit 2; AltName: Full=Cleavage and
polyadenylation specificity factor 100 kDa subunit;
Short=CPSF 100 kDa subunit
Length = 842
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 63/107 (58%), Positives = 78/107 (72%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ SG DE P CYLLQVD ILLDCGWDE F + + +EL+ ++ I AVL+
Sbjct: 1 MTSIIKLKVFSGAKDEGPLCYLLQVDNDYILLDCGWDERFELKYFEELRPYIPKISAVLI 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLG LPY+V KCGL+ P++ T+PVYKMGQMF+YDL D
Sbjct: 61 SHPDPLHLGGLPYLVAKCGLTAPVYCTVPVYKMGQMFIYDLVYSHLD 107
>gi|17559452|ref|NP_504822.1| Protein CPSF-2 [Caenorhabditis elegans]
gi|18201967|sp|O17403.1|CPSF2_CAEEL RecName: Full=Probable cleavage and polyadenylation specificity
factor subunit 2; AltName: Full=Cleavage and
polyadenylation specificity factor 100 kDa subunit;
Short=CPSF 100 kDa subunit
gi|351057814|emb|CCD64424.1| Protein CPSF-2 [Caenorhabditis elegans]
Length = 843
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 64/107 (59%), Positives = 78/107 (72%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ SG DE P CYLLQVD ILLDCGWDE F + + +ELK + I AVL+
Sbjct: 1 MTSIIKLKVFSGAKDEGPLCYLLQVDGDYILLDCGWDERFGLQYFEELKPFIPKISAVLI 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLG LPY+V KCGL+ P++AT+PVYKMGQMF+YD+ D
Sbjct: 61 SHPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMVYSHLD 107
>gi|268558798|ref|XP_002637390.1| Hypothetical protein CBG19097 [Caenorhabditis briggsae]
Length = 838
Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 63/107 (58%), Positives = 78/107 (72%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ SG DE P CYLLQVD ILLDCGWDE F + + +EL+ ++ I AVL+
Sbjct: 1 MTSIIKLKVFSGAKDEGPLCYLLQVDNDYILLDCGWDERFELKYFEELRPYIPKISAVLI 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLG LPY+V KCGL+ P++ T+PVYKMGQMF+YDL D
Sbjct: 61 SHPDPLHLGGLPYLVAKCGLTAPVYCTVPVYKMGQMFIYDLVYSHLD 107
>gi|308480408|ref|XP_003102411.1| CRE-CPSF-2 protein [Caenorhabditis remanei]
gi|308262077|gb|EFP06030.1| CRE-CPSF-2 protein [Caenorhabditis remanei]
Length = 850
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 63/107 (58%), Positives = 78/107 (72%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ SG DE P CYLLQVD ILLDCGWDE F + + ++LK + I AVL+
Sbjct: 1 MTSIIKLRVFSGAKDEGPLCYLLQVDNDYILLDCGWDERFELKYFEDLKPFIPKISAVLI 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLG LPY+V KCGL+ P++AT+PVYKMGQMF+YD+ D
Sbjct: 61 SHPDPLHLGGLPYLVAKCGLTAPVYATVPVYKMGQMFIYDMVYSHLD 107
>gi|391325235|ref|XP_003737144.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 3 [Metaseiulus occidentalis]
Length = 754
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 61/103 (59%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSI+K+ ++SG DESP CYLLQ+DEFKILLD GWDE F+ ++EL R V +D +LL
Sbjct: 1 MTSIVKIHAISGVHDESPHCYLLQIDEFKILLDLGWDEFFNPKPIRELSRLVSQVDVILL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQ 103
SYPD HLGA P++ + + CP++AT+PVYKMGQ+FMYDL +
Sbjct: 61 SYPDPLHLGAFPHL--RHEIKCPVYATVPVYKMGQLFMYDLHE 101
>gi|391325233|ref|XP_003737143.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 2 [Metaseiulus occidentalis]
Length = 745
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 61/103 (59%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSI+K+ ++SG DESP CYLLQ+DEFKILLD GWDE F+ ++EL R V +D +LL
Sbjct: 1 MTSIVKIHAISGVHDESPHCYLLQIDEFKILLDLGWDEFFNPKPIRELSRLVSQVDVILL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQ 103
SYPD HLGA P++ + + CP++AT+PVYKMGQ+FMYDL +
Sbjct: 61 SYPDPLHLGAFPHL--RHEIKCPVYATVPVYKMGQLFMYDLHE 101
>gi|391325231|ref|XP_003737142.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 1 [Metaseiulus occidentalis]
Length = 741
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 61/103 (59%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSI+K+ ++SG DESP CYLLQ+DEFKILLD GWDE F+ ++EL R V +D +LL
Sbjct: 1 MTSIVKIHAISGVHDESPHCYLLQIDEFKILLDLGWDEFFNPKPIRELSRLVSQVDVILL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQ 103
SYPD HLGA P++ + + CP++AT+PVYKMGQ+FMYDL +
Sbjct: 61 SYPDPLHLGAFPHL--RHEIKCPVYATVPVYKMGQLFMYDLHE 101
>gi|281208327|gb|EFA82503.1| beta-lactamase domain-containing protein [Polysphondylium pallidum
PN500]
Length = 738
Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats.
Identities = 62/103 (60%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Query: 1 MTSIIKMTSLSGTMDE-SPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVL 59
MTSIIK T LSG +E SPPCYLL++DEF ILLDCGW+ + ++ LK + IDA+L
Sbjct: 1 MTSIIKFTPLSGGANEISPPCYLLEIDEFTILLDCGWNHSLDLSILEPLKAVANKIDAIL 60
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLF 102
LSYPD+ HLGALPY V K GL+ I+ T P++KMGQMF+YDL+
Sbjct: 61 LSYPDIEHLGALPYAVSKLGLTGTIYGTTPIFKMGQMFLYDLY 103
>gi|302833565|ref|XP_002948346.1| hypothetical protein VOLCADRAFT_31342 [Volvox carteri f.
nagariensis]
gi|300266566|gb|EFJ50753.1| hypothetical protein VOLCADRAFT_31342 [Volvox carteri f.
nagariensis]
Length = 375
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 59/102 (57%), Positives = 79/102 (77%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + ++ T LSG ESP CYLL++D F ILLDCGWDE F ++ +KR + ++AVLL
Sbjct: 1 METSVRFTPLSGVDAESPLCYLLEIDSFTILLDCGWDENFDESALEPIKRVLPRVNAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLF 102
S+PDVAHLGALPY+VGKCGL+ PIF+T PV +MG+MFM++ +
Sbjct: 61 SHPDVAHLGALPYLVGKCGLTAPIFSTKPVRRMGEMFMFESY 102
>gi|313232558|emb|CBY19228.1| unnamed protein product [Oikopleura dioica]
Length = 764
Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats.
Identities = 58/105 (55%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSI+K SLSG DE+P C+LLQ+D+FK LLDCGW E + LKRH IDA+L+
Sbjct: 1 MTSIVKFQSLSGFDDEAPHCHLLQIDDFKFLLDCGWAEQHHEKIIDGLKRHGRQIDAILI 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
S+PD+ H G LPY+ K G++CPI+ T+P KMGQMF+YD R
Sbjct: 61 SHPDLLHCGMLPYL-SKLGITCPIYMTMPACKMGQMFLYDFVLSR 104
>gi|172087214|ref|XP_001913149.1| cleavage and polyadenylation factor [Oikopleura dioica]
gi|18029276|gb|AAL56454.1| cleavage and polyadenylation factor-like protein [Oikopleura
dioica]
Length = 765
Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats.
Identities = 58/105 (55%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSI+K SLSG DE+P C+LLQ+D+FK LLDCGW E + LKRH IDA+L+
Sbjct: 1 MTSIVKFQSLSGFDDEAPHCHLLQIDDFKFLLDCGWAEQHHEKIIDGLKRHGRQIDAILI 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
S+PD+ H G LPY+ K G++CPI+ T+P KMGQMF+YD R
Sbjct: 61 SHPDLLHCGMLPYL-SKLGITCPIYMTMPACKMGQMFLYDFVLSR 104
>gi|328866931|gb|EGG15314.1| beta-lactamase domain-containing protein [Dictyostelium
fasciculatum]
Length = 768
Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats.
Identities = 56/106 (52%), Positives = 77/106 (72%), Gaps = 1/106 (0%)
Query: 1 MTSIIKMTSLSGTMDE-SPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVL 59
MTS+IK T L G + +PPCYLL++D F ILLDCGW+ + + ELK+ + +DA+L
Sbjct: 1 MTSVIKFTPLCGGAGQITPPCYLLEIDNFCILLDCGWNAKLDISLLDELKKVANKVDAIL 60
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
L+YPD H+GALPY +GK GL+ I+ T P++KMGQ+FMYDL+ R
Sbjct: 61 LTYPDTEHIGALPYAIGKLGLTGKIYGTTPIHKMGQIFMYDLYTSR 106
>gi|167535876|ref|XP_001749611.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772003|gb|EDQ85662.1| predicted protein [Monosiga brevicollis MX1]
Length = 770
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 55/107 (51%), Positives = 75/107 (70%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M I+++ +LSG +DESPPCYLL++D +ILLDCGW E F + L + ID VLL
Sbjct: 1 MAFIVRVEALSGVLDESPPCYLLELDGVRILLDCGWSEHFDTTQLDALAKVASTIDLVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S PD+ HLGALPY K GL+CP +AT+P+ ++G +F+YD FQ R +
Sbjct: 61 SQPDIHHLGALPYAYEKLGLTCPCYATLPIKQLGLLFLYDAFQARME 107
>gi|452822529|gb|EME29547.1| cleavage and polyadenylation specificity factor subunit 2
[Galdieria sulphuraria]
Length = 747
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 55/106 (51%), Positives = 76/106 (71%), Gaps = 1/106 (0%)
Query: 1 MTSIIKMTSLSGTMDES-PPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVL 59
M+SI++ T L G E CYLL++D+F+ILLDCGW++ F ++ L+R +DAVL
Sbjct: 1 MSSILRFTPLYGVKTEDLAVCYLLEIDDFRILLDCGWNDRFEETLLEPLRRIAPRVDAVL 60
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
+S+PD+ HLGALPY V K GL P +AT+PV++MGQ+FMYD Q R
Sbjct: 61 ISHPDLFHLGALPYAVAKLGLRAPTYATLPVWRMGQLFMYDAHQSR 106
>gi|66826811|ref|XP_646760.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
gi|74858209|sp|Q55BS1.1|CPSF2_DICDI RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|60474609|gb|EAL72546.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
Length = 784
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 57/103 (55%), Positives = 73/103 (70%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M SIIK T+LSG DESPPCYLL++D+F ILLDCG ++ L++ IDAVLL
Sbjct: 1 MASIIKFTALSGAKDESPPCYLLEIDDFCILLDCGLSYNLDFSLLEPLEKVAKKIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQ 103
S+ D H+G LPY+VGK GL+ I+ T PV KMG MF+YDL++
Sbjct: 61 SHSDTTHIGGLPYVVGKYGLTGTIYGTTPVLKMGTMFLYDLYE 103
>gi|330803886|ref|XP_003289932.1| hypothetical protein DICPUDRAFT_80682 [Dictyostelium purpureum]
gi|325079974|gb|EGC33550.1| hypothetical protein DICPUDRAFT_80682 [Dictyostelium purpureum]
Length = 752
Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 58/114 (50%), Positives = 75/114 (65%), Gaps = 5/114 (4%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M SI+K T+LSG +E PPCYLL++D+F ILLDCG ++ LK++ IDAVLL
Sbjct: 1 MGSIVKFTALSGGDNEKPPCYLLEIDDFCILLDCGLSYDLDFSLLEPLKKYADKIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLF-----QVRYDTF 109
S D+ H+G LPY VGK GL+ I+ T PV KMG MF+YDL+ Q +D F
Sbjct: 61 SNSDLLHIGGLPYAVGKLGLTGTIYGTTPVLKMGTMFLYDLYENKMAQEEFDQF 114
>gi|255070137|ref|XP_002507150.1| predicted protein [Micromonas sp. RCC299]
gi|255070139|ref|XP_002507151.1| predicted protein [Micromonas sp. RCC299]
gi|226522425|gb|ACO68408.1| predicted protein [Micromonas sp. RCC299]
gi|226522426|gb|ACO68409.1| predicted protein [Micromonas sp. RCC299]
Length = 808
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 53/103 (51%), Positives = 72/103 (69%), Gaps = 2/103 (1%)
Query: 5 IKMTSLSGT--MDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSY 62
IK + L G + E P CY+L +D FKILLDCGW++ F ++ ++ L + +DAVL+S+
Sbjct: 8 IKFSPLYGVQGIGEDPFCYVLDLDGFKILLDCGWNDSFDVNLLEPLAKVAAEVDAVLISH 67
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
PD HLGALPY GK G+ C ++AT+PV+KMG MFMYD F R
Sbjct: 68 PDTEHLGALPYAFGKLGMRCKVYATLPVHKMGLMFMYDHFLSR 110
>gi|428169733|gb|EKX38664.1| hypothetical protein GUITHDRAFT_89302 [Guillardia theta CCMP2712]
Length = 770
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 51/105 (48%), Positives = 74/105 (70%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M+S++K T L G E P CYLL++DE ILLDCGWDE F + +++L + +DA+LL
Sbjct: 1 MSSLVKFTPLCGARSEEPLCYLLEIDEACILLDCGWDENFDVVSLRKLIKIAPTLDAILL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
++ D+ HLGALPY++ C + ++ATIPV KMGQ+ MYD+ + R
Sbjct: 61 THCDLGHLGALPYIIRNCNVKAKVYATIPVQKMGQLTMYDMVESR 105
>gi|159465769|ref|XP_001691095.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279781|gb|EDP05541.1| predicted protein [Chlamydomonas reinhardtii]
Length = 389
Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats.
Identities = 48/100 (48%), Positives = 75/100 (75%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M ++++ T L G ++SP C LL++D++ ILLDCGWD+ F + + + + + IDAVLL
Sbjct: 1 METVVRYTPLCGVGEDSPLCSLLEIDDYTILLDCGWDDSFDVALLDPVLKVLPRIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
S+P AHLG+LPY+VG+CGL+ P+F+T P +MG+MFM++
Sbjct: 61 SHPSPAHLGSLPYLVGRCGLAAPVFSTKPTRRMGEMFMFE 100
>gi|145340766|ref|XP_001415490.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575713|gb|ABO93782.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 715
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 48/88 (54%), Positives = 64/88 (72%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79
CY + +D ILLDCGW++ F +D +K L +DAVL+S+PD AHLGALPY GK G
Sbjct: 2 CYHVSIDGCNILLDCGWNDKFDVDMLKPLAAIAPKVDAVLISHPDTAHLGALPYAFGKLG 61
Query: 80 LSCPIFATIPVYKMGQMFMYDLFQVRYD 107
++C ++AT+PV+KMGQM+MYD F R D
Sbjct: 62 MNCKVYATLPVHKMGQMYMYDHFLTRQD 89
>gi|328768987|gb|EGF79032.1| hypothetical protein BATDEDRAFT_12823 [Batrachochytrium
dendrobatidis JAM81]
Length = 719
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 71/107 (66%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M+S +K T++ G D+ P CYLL++DE K+LLDCGW E + L++ IDA+LL
Sbjct: 1 MSSFVKFTAILGAHDQGPLCYLLEIDEAKLLLDCGWSESTDPSQLAALEKVARQIDALLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+ D+ HLGA PY GL+CP+FAT PV+ MGQ M+DL Q + +
Sbjct: 61 SHADLDHLGAFPYAAKHLGLTCPVFATTPVHDMGQACMHDLIQAKLN 107
>gi|308799055|ref|XP_003074308.1| polyadenylation cleavage/specificity factor 100 kDa subunit (ISS)
[Ostreococcus tauri]
gi|116000479|emb|CAL50159.1| polyadenylation cleavage/specificity factor 100 kDa subunit (ISS)
[Ostreococcus tauri]
Length = 807
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/92 (52%), Positives = 65/92 (70%)
Query: 16 ESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMV 75
E CY + +D ILLDCGW + F ++ +K L+ +DAVL+S+PD AHLGALPY
Sbjct: 43 ERAMCYHVSIDGCNILLDCGWTDAFDVEMLKPLEAIAKDVDAVLISHPDTAHLGALPYAF 102
Query: 76 GKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
GK G++C ++AT+PV+KMGQM+MYD F R D
Sbjct: 103 GKLGMNCKVYATLPVHKMGQMYMYDHFLTRQD 134
>gi|301092285|ref|XP_002997001.1| cleavage and polyadenylation specificity factor subunit, putative
[Phytophthora infestans T30-4]
gi|262112190|gb|EEY70242.1| cleavage and polyadenylation specificity factor subunit, putative
[Phytophthora infestans T30-4]
Length = 222
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
Query: 3 SIIKMTSLSGTMDESPPC-YLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
++I T L G +P C YLL+VDE ILLDCGW + + ++ +K L+R V ID VL+S
Sbjct: 2 AVITFTPLYGVHSTAPCCAYLLEVDEVCILLDCGWTDAYDVELLKPLQRVVDRIDLVLVS 61
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
+ D+AH+GALPY +GK GLS P++ T+PV++MGQ+ +YD FQ +
Sbjct: 62 HLDLAHMGALPYAMGKLGLSAPVYGTLPVHRMGQIALYDAFQAK 105
>gi|449018596|dbj|BAM81998.1| cleavage and polyadenylation specific factor 2, 100kD subunit
[Cyanidioschyzon merolae strain 10D]
Length = 884
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 55/110 (50%), Positives = 76/110 (69%), Gaps = 4/110 (3%)
Query: 1 MTSIIKMTSLSGTMDESPP-CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHH-IDAV 58
M S I++T L G +PP C +L++D+ LLDCGW++ F + ++ L+ + IDAV
Sbjct: 1 MASSIRVTPLYGAHTSAPPLCTVLEIDDGVFLLDCGWNDRFDVALLEPLRPVITRGIDAV 60
Query: 59 LLSYPDVAHLGALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLFQVRY 106
L++PD+AHLGALPY+VGK GL S PI+AT PV +GQMF+YD Q RY
Sbjct: 61 FLTHPDLAHLGALPYLVGKLGLPASVPIYATTPVQILGQMFLYDAHQHRY 110
>gi|168010331|ref|XP_001757858.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691134|gb|EDQ77498.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 724
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 67/100 (67%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T LSG E+P CYLLQVD F+ LLDCGW + F + ++ LK IDAVLL
Sbjct: 1 MGTSVQVTPLSGAHSEAPLCYLLQVDGFRFLLDCGWTDSFDLSLLEPLKSVAPTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
SYPD HLGA Y K GL ++ T+PV+ MGQM+MYD
Sbjct: 61 SYPDTIHLGAFTYAFAKLGLQATMYCTLPVHHMGQMYMYD 100
>gi|449528453|ref|XP_004171219.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 2-like, partial [Cucumis
sativus]
Length = 501
Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 75/117 (64%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T L G +E+P YL+ VD+F L+DCGW++ F ++ L R IDAVL+
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLI 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY + + GLS P+F+T PVY++G + MYD F R L TL+
Sbjct: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQFIARKQVSEFDLFTLD 117
>gi|358338982|dbj|GAA43367.2| cleavage and polyadenylation specificity factor subunit 2, partial
[Clonorchis sinensis]
Length = 995
Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats.
Identities = 46/82 (56%), Positives = 59/82 (71%)
Query: 25 VDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPI 84
VDEF LLDCGW + ++VK L + HIDAVLLS+ + HLG LP++VG CGL CP+
Sbjct: 1 VDEFHCLLDCGWSDGLDKEYVKRLTQWTRHIDAVLLSHQSLRHLGLLPFLVGSCGLKCPV 60
Query: 85 FATIPVYKMGQMFMYDLFQVRY 106
+AT PVYKMGQ+ +YD +Q Y
Sbjct: 61 YATTPVYKMGQLTLYDFYQSMY 82
>gi|297808393|ref|XP_002872080.1| CPSF100 [Arabidopsis lyrata subsp. lyrata]
gi|297317917|gb|EFH48339.1| CPSF100 [Arabidopsis lyrata subsp. lyrata]
Length = 739
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 72/105 (68%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T LSG +E+P YL+ +D F L+DCGW+++F ++ L R IDAVLL
Sbjct: 1 MGTSVQVTPLSGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRVASSIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
S+PD HLGALPY + + GLS P++AT PV+++G + MYD F R
Sbjct: 61 SHPDTLHLGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSR 105
>gi|348689663|gb|EGZ29477.1| hypothetical protein PHYSODRAFT_473604 [Phytophthora sojae]
Length = 221
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
Query: 3 SIIKMTSLSGTMDESPPC-YLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
++I T L G +P C YLL+VDE ILLDCGW + + ++ +K L+R V ID VL+S
Sbjct: 2 AVITFTPLYGVHSSAPCCAYLLEVDEVCILLDCGWTDEYDVELLKPLQRVVDRIDLVLVS 61
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
+ D+AH+GALPY +GK GL+ P++ T+PV++MGQ+ +YD FQ +
Sbjct: 62 HLDLAHMGALPYAMGKLGLNAPVYGTLPVHRMGQIALYDAFQAK 105
>gi|357440035|ref|XP_003590295.1| Cleavage and polyadenylation specificity factor subunit [Medicago
truncatula]
gi|355479343|gb|AES60546.1| Cleavage and polyadenylation specificity factor subunit [Medicago
truncatula]
Length = 630
Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats.
Identities = 48/105 (45%), Positives = 69/105 (65%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T L G +E+P YL+ +D F IL+DCGW++ F ++ L R IDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDSFNILIDCGWNDHFDPSLLQPLSRVASTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
S+PD HL ALPY + GLS P+++T PVY++G + MYD F R
Sbjct: 61 SHPDTLHLAALPYAIKHLGLSAPVYSTEPVYRLGLLTMYDHFLSR 105
>gi|325187176|emb|CCA21717.1| cleavage and polyadenylation specificity factor subunit putative
[Albugo laibachii Nc14]
gi|325187319|emb|CCA21858.1| cleavage and polyadenylation specificity factor subunit putative
[Albugo laibachii Nc14]
Length = 731
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 3 SIIKMTSLSGTMDESPPC-YLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
++I T L G P C YLL++DE ILLDCGW + + + +K L++ ID VL+S
Sbjct: 2 AVITFTPLYGVYSRDPCCAYLLEIDEVCILLDCGWTDQYDTELLKPLQKVADRIDLVLIS 61
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+PD+AH+GALPY +GK GL PI+ T+PV+++GQ+ +YD +Q
Sbjct: 62 HPDMAHIGALPYAIGKLGLKAPIYGTLPVHRLGQINLYDAYQA 104
>gi|302819854|ref|XP_002991596.1| hypothetical protein SELMODRAFT_429848 [Selaginella moellendorffii]
gi|300140629|gb|EFJ07350.1| hypothetical protein SELMODRAFT_429848 [Selaginella moellendorffii]
Length = 715
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 48/100 (48%), Positives = 67/100 (67%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T L+G E P CYLLQVD+F+ LLDCGW+++F + ++ L IDAVLL
Sbjct: 1 MGTSVQLTPLAGAHSEGPLCYLLQVDDFRFLLDCGWNDVFDVSLLQPLVSVAPTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
S+ D HLGALPY + K GL+ ++ T P+ MG M MYD
Sbjct: 61 SHSDTLHLGALPYAIAKLGLNATVYCTHPIRSMGHMQMYD 100
>gi|302776792|ref|XP_002971541.1| hypothetical protein SELMODRAFT_441578 [Selaginella moellendorffii]
gi|300160673|gb|EFJ27290.1| hypothetical protein SELMODRAFT_441578 [Selaginella moellendorffii]
Length = 721
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 48/100 (48%), Positives = 67/100 (67%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T L+G E P CYLLQVD+F+ LLDCGW+++F + ++ L IDAVLL
Sbjct: 1 MGTSVQLTPLAGAHSEGPLCYLLQVDDFRFLLDCGWNDVFDVSLLQPLVSVAPTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
S+ D HLGALPY + K GL+ ++ T P+ MG M MYD
Sbjct: 61 SHSDTLHLGALPYAIAKLGLNATVYCTHPIRSMGHMQMYD 100
>gi|357127861|ref|XP_003565596.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Brachypodium distachyon]
Length = 738
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 70/106 (66%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T LSG E P CYLL VD F+ LLDCGW + ++ L R IDAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDHCDPSLLQPLARVAPTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
S+PD+ HLGALPY + GLS P++AT PV+++G + MYD F R+
Sbjct: 61 SHPDIMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDYFLSRW 106
>gi|449446027|ref|XP_004140773.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Cucumis sativus]
Length = 738
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 71/105 (67%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T L G +E+P YL+ VD+F L+DCGW++ F ++ L R IDAVL+
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLI 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
S+PD HLGALPY + + GLS P+F+T PVY++G + MYD F R
Sbjct: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQFIAR 105
>gi|15237845|ref|NP_197776.1| cleavage and polyadenylation specificity factor subunit 2
[Arabidopsis thaliana]
gi|18203240|sp|Q9LKF9.2|CPSF2_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=AtCPSF100;
Short=CPSF 100 kDa subunit; AltName: Full=Protein EMBRYO
DEFECTIVE 1265; AltName: Full=Protein ENHANCED SILENCING
PHENOTYPE 5
gi|10176855|dbj|BAB10061.1| cleavage and polyadenylation specificity factor [Arabidopsis
thaliana]
gi|14334618|gb|AAK59487.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
gi|28393921|gb|AAO42368.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
gi|332005845|gb|AED93228.1| cleavage and polyadenylation specificity factor subunit 2
[Arabidopsis thaliana]
Length = 739
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 71/105 (67%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T L G +E+P YL+ +D F L+DCGW+++F ++ L R IDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRVASTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
S+PD H+GALPY + + GLS P++AT PV+++G + MYD F R
Sbjct: 61 SHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSR 105
>gi|357160194|ref|XP_003578687.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Brachypodium distachyon]
Length = 738
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 69/106 (65%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T LSG E P CYLL VD F+ LLDCGW + ++ L R IDAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDHCDPSLLQPLARVAPTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
S+PD+ HLGALPY + GLS P++ T PV+++G + MYD F R+
Sbjct: 61 SHPDIMHLGALPYAMKHLGLSAPVYVTEPVFRLGLLTMYDYFLSRW 106
>gi|9082326|gb|AAF82809.1|AF283277_1 polyadenylation cleavage/specificity factor 100 kDa subunit
[Arabidopsis thaliana]
Length = 739
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 71/105 (67%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T L G +E+P YL+ +D F L+DCGW+++F ++ L R IDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLPRVASTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
S+PD H+GALPY + + GLS P++AT PV+++G + MYD F R
Sbjct: 61 SHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSR 105
>gi|219886123|gb|ACL53436.1| unknown [Zea mays]
gi|414881946|tpg|DAA59077.1| TPA: cleavage and polyadenylation specificity factor, subunit
isoform 1 [Zea mays]
gi|414881947|tpg|DAA59078.1| TPA: cleavage and polyadenylation specificity factor, subunit
isoform 2 [Zea mays]
gi|414881948|tpg|DAA59079.1| TPA: cleavage and polyadenylation specificity factor, subunit
isoform 3 [Zea mays]
Length = 737
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 71/106 (66%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T LSG E P CYLL VD F+ LLDCGW ++ ++ L + +DAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDTSQLQPLAKVAPTVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
S+PD+ HLGALPY + GLS P++AT PV+++G + MYD F R+
Sbjct: 61 SHPDMMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDHFLSRW 106
>gi|255553723|ref|XP_002517902.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
gi|223542884|gb|EEF44420.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
Length = 740
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/105 (43%), Positives = 71/105 (67%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T L+G +E+P YL+ +D F +L+DCGW++ F ++ L R IDAVLL
Sbjct: 1 MGTSVQVTPLNGVYNENPLSYLISIDNFNLLIDCGWNDHFDPSLLQPLSRVASTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
S+ D HLGALPY + + GLS P+++T PVY++G + MYD + R
Sbjct: 61 SHSDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSR 105
>gi|414881949|tpg|DAA59080.1| TPA: hypothetical protein ZEAMMB73_548570 [Zea mays]
Length = 766
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 71/106 (66%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T LSG E P CYLL VD F+ LLDCGW ++ ++ L + +DAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDTSQLQPLAKVAPTVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
S+PD+ HLGALPY + GLS P++AT PV+++G + MYD F R+
Sbjct: 61 SHPDMMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDHFLSRW 106
>gi|414881945|tpg|DAA59076.1| TPA: hypothetical protein ZEAMMB73_548570 [Zea mays]
Length = 309
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 71/106 (66%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T LSG E P CYLL VD F+ LLDCGW ++ ++ L + +DAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDTSQLQPLAKVAPTVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
S+PD+ HLGALPY + GLS P++AT PV+++G + MYD F R+
Sbjct: 61 SHPDMMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDHFLSRW 106
>gi|242037469|ref|XP_002466129.1| hypothetical protein SORBIDRAFT_01g001930 [Sorghum bicolor]
gi|241919983|gb|EER93127.1| hypothetical protein SORBIDRAFT_01g001930 [Sorghum bicolor]
Length = 738
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 71/106 (66%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T LSG E P CYLL VD F+ LLDCGW ++ ++ L + +DAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDTSQLQPLAKVAPTVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
S+PD+ HLGALPY + GLS P++AT PV+++G + MYD F R+
Sbjct: 61 SHPDMMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDHFLSRW 106
>gi|225464483|ref|XP_002268591.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Vitis vinifera]
gi|302143847|emb|CBI22708.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 71/105 (67%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T L G +E+P YL+ +D F L+DCGW++ F F++ L R IDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSFLQPLARVASTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
++PD HLGALPY + + GLS P+++T PVY++G + MYD + R
Sbjct: 61 AHPDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSR 105
>gi|290981012|ref|XP_002673225.1| predicted protein [Naegleria gruberi]
gi|284086807|gb|EFC40481.1| predicted protein [Naegleria gruberi]
Length = 808
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 52/111 (46%), Positives = 73/111 (65%), Gaps = 8/111 (7%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSM--DFVKE-LKRHVHHIDA 57
M+S I+ L G+ +E P C +L VD++ ILLDCGWDE F+ ++E + + IDA
Sbjct: 1 MSSSIQFVPLVGSQNEGPVCSILIVDDYYILLDCGWDENFNTKDSHIQEIINNYRDKIDA 60
Query: 58 VLLSYPDVAHLGALPYMVGKCGL-----SCPIFATIPVYKMGQMFMYDLFQ 103
+L+S D+ H GALPY+VGKCG+ IFAT+P+ KMGQM +YD +Q
Sbjct: 61 ILISQSDIYHCGALPYLVGKCGILENKKKAKIFATLPIVKMGQMHLYDAYQ 111
>gi|218202664|gb|EEC85091.1| hypothetical protein OsI_32459 [Oryza sativa Indica Group]
Length = 1195
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 68/105 (64%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T LSG E P CYLL VD F+ LLDCGW ++ ++ L + IDAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDPSHLQPLAKVAPTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
S+ D HLGALPY + GLS P++AT PV+++G + +YD F R
Sbjct: 61 SHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTLYDYFISR 105
>gi|222642134|gb|EEE70266.1| hypothetical protein OsJ_30409 [Oryza sativa Japonica Group]
Length = 1073
Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 68/105 (64%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T LSG E P CYLL VD F+ LLDCGW ++ ++ L + IDAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDPSHLQPLAKVAPTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
S+ D HLGALPY + GLS P++AT PV+++G + +YD F R
Sbjct: 61 SHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTLYDYFISR 105
>gi|356559790|ref|XP_003548180.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 2 [Glycine max]
Length = 743
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 73/117 (62%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T L G +E+P YL+ +D F L+DCGW++ F ++ L R IDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSLLQPLARVASTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+ D HLGALPY + + GLS P+++T PVY++G + MYD + R L TL+
Sbjct: 61 SHADTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLD 117
>gi|356559788|ref|XP_003548179.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 1 [Glycine max]
Length = 738
Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 46/105 (43%), Positives = 69/105 (65%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T L G +E+P YL+ +D F L+DCGW++ F ++ L R IDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSLLQPLARVASTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
S+ D HLGALPY + + GLS P+++T PVY++G + MYD + R
Sbjct: 61 SHADTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSR 105
>gi|356530858|ref|XP_003533996.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 2 [Glycine max]
Length = 742
Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 73/117 (62%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T L G +E+P YL+ +D F L+DCGW++ F ++ L R IDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSHLQPLARVASTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+ D HLGALPY + + GLS P+++T PVY++G + MYD + R L TL+
Sbjct: 61 SHADTLHLGALPYAMKRLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLD 117
>gi|224121102|ref|XP_002330904.1| predicted protein [Populus trichocarpa]
gi|222872726|gb|EEF09857.1| predicted protein [Populus trichocarpa]
Length = 740
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/100 (45%), Positives = 69/100 (69%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T LSG +E+P YL+ +D F L+DCGW++ F ++ L + IDAVLL
Sbjct: 1 MGTSVQVTPLSGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASKIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
SY D+ HLGALP+ + + GL+ P+F+T PVY++G + MYD
Sbjct: 61 SYGDMLHLGALPFAMKQFGLNAPVFSTEPVYRLGLLTMYD 100
>gi|356530856|ref|XP_003533995.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 1 [Glycine max]
Length = 736
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 73/117 (62%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T L G +E+P YL+ +D F L+DCGW++ F ++ L R IDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSHLQPLARVASTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+ D HLGALPY + + GLS P+++T PVY++G + MYD + R L TL+
Sbjct: 61 SHADTLHLGALPYAMKRLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLD 117
>gi|13938095|gb|AAH07163.1| Cpsf2 protein, partial [Mus musculus]
Length = 732
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/67 (70%), Positives = 55/67 (82%)
Query: 51 HVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFL 110
HVH IDAVLLS+PD HLGALP+ VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T
Sbjct: 1 HVHQIDAVLLSHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTED 60
Query: 111 KLLLTLE 117
L TL+
Sbjct: 61 FTLFTLD 67
>gi|224161209|ref|XP_002338303.1| predicted protein [Populus trichocarpa]
gi|222871828|gb|EEF08959.1| predicted protein [Populus trichocarpa]
Length = 106
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 69/100 (69%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T LSG +E+P YL+ +D F L+DCGW++ F ++ L + IDAVLL
Sbjct: 1 MGTSVQVTPLSGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASKIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
SY D+ HLGALP+ + + GL+ P+F+T PVY++G + MYD
Sbjct: 61 SYGDMLHLGALPFAMKQFGLNAPVFSTEPVYRLGLLTMYD 100
>gi|326495752|dbj|BAJ85972.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 726
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 62/94 (65%)
Query: 13 TMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALP 72
T E P CYLL VD F+ LLDCGW + ++ L R IDAVLLS+PD+ HLGALP
Sbjct: 1 TYGEGPLCYLLAVDGFRFLLDCGWTDHCDPALLQPLARVAPTIDAVLLSHPDMMHLGALP 60
Query: 73 YMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
Y + GLS P++AT PVY++G + MYD F R+
Sbjct: 61 YAIKHLGLSAPVYATEPVYRLGLLTMYDYFLSRW 94
>gi|115480769|ref|NP_001063978.1| Os09g0569400 [Oryza sativa Japonica Group]
gi|75253249|sp|Q652P4.1|CPSF2_ORYSJ RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|52077178|dbj|BAD46223.1| putative cleavage and polyadenylation specificity factor [Oryza
sativa Japonica Group]
gi|113632211|dbj|BAF25892.1| Os09g0569400 [Oryza sativa Japonica Group]
Length = 738
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 68/105 (64%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T LSG E P CYLL VD F+ LLDCGW ++ ++ L + IDAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDPSHLQPLAKVAPTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
S+ D HLGALPY + GLS P++AT PV+++G + +YD F R
Sbjct: 61 SHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTLYDYFISR 105
>gi|384251490|gb|EIE24968.1| hypothetical protein COCSUDRAFT_83661 [Coccomyxa subellipsoidea
C-169]
Length = 731
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 50/102 (49%), Positives = 73/102 (71%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
I++T L G + P C LLQ+D+ +LLDCGWD+ + M+ + LK + H+ VL+++PD
Sbjct: 3 IQVTPLYGAGTDGPVCNLLQIDQLLLLLDCGWDDAYDMELLHPLKNVIGHVHGVLITHPD 62
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
AHLGALPY+VG+ LS P++AT PV KMG++FMYD + R+
Sbjct: 63 PAHLGALPYLVGRLKLSVPVYATFPVQKMGEIFMYDQYVTRH 104
>gi|123476407|ref|XP_001321376.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121904201|gb|EAY09153.1| hypothetical protein TVAG_363680 [Trichomonas vaginalis G3]
Length = 700
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
T+ I LSG +P YLL VDEF LLDCGW E F ++ ++ H++AVLLS
Sbjct: 5 TTSISFQPLSGAQSTTPFAYLLHVDEFTFLLDCGWTEDFRLEDIQTQIEICSHVNAVLLS 64
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLF 102
+ + H+GALPY+ GLS PIFAT+P+ +G + +YD +
Sbjct: 65 HASIEHIGALPYLCSH-GLSAPIFATMPIPALGSLLIYDSY 104
>gi|298708373|emb|CBJ48436.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 997
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%)
Query: 12 GTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGAL 71
G P +L+V ILLDCGWD F ++ L+ V ID VL+S+PD+ HLG L
Sbjct: 138 GATGVEPVSSILEVGGVTILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGL 197
Query: 72 PYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
PY GK G+ ++AT+PV+KMGQM +YD + R
Sbjct: 198 PYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 231
>gi|297695726|ref|XP_002825082.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 2 [Pongo abelii]
Length = 747
Score = 94.4 bits (233), Expect = 9e-18, Method: Composition-based stats.
Identities = 46/86 (53%), Positives = 59/86 (68%), Gaps = 4/86 (4%)
Query: 24 QVDEFKILLDCGWDEMFSM----DFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79
++DE K+ + E+F + +++ +HVH IDAVLLS+PD HLGA PY VGK G
Sbjct: 15 KLDERKLAIIQINKELFRIPGVSSYIRLRYQHVHQIDAVLLSHPDPLHLGAXPYAVGKLG 74
Query: 80 LSCPIFATIPVYKMGQMFMYDLFQVR 105
L C I+A IPVYKMGQM MYDL+Q R
Sbjct: 75 LKCAIYAPIPVYKMGQMXMYDLYQFR 100
>gi|412994069|emb|CCO14580.1| predicted protein [Bathycoccus prasinos]
Length = 1092
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 41/88 (46%), Positives = 60/88 (68%), Gaps = 4/88 (4%)
Query: 18 PPCYLLQVDEFKILLDCGWDEMFSM-DFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVG 76
P CYLLQ+D+ ILLDCGWD+ F ++VKEL++ +D VL+S+ H+GA+P +
Sbjct: 186 PLCYLLQIDQANILLDCGWDDRFDQTEYVKELEKIAPTLDCVLISHCTQRHVGAVPLLFS 245
Query: 77 ---KCGLSCPIFATIPVYKMGQMFMYDL 101
KC +C I+A+IP +K+GQM YD+
Sbjct: 246 ERVKCNPNCKIYASIPTHKLGQMLCYDI 273
>gi|422293869|gb|EKU21169.1| cleavage and polyadenylation specificity factor subunit 2
[Nannochloropsis gaditana CCMP526]
Length = 925
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 58/93 (62%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLG 69
L G ++ P CYLL+V E +LLDCGWD ++ L + + VLLS+PD++H+G
Sbjct: 67 LYGVLEHEPLCYLLKVGEATLLLDCGWDVQLDEALLEPLLPVLPQVQLVLLSFPDLSHMG 126
Query: 70 ALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLF 102
ALP++ PI+ T PV+KM QM +YDL+
Sbjct: 127 ALPWVAKHLRPGVPIYTTQPVFKMAQMVLYDLY 159
>gi|422294077|gb|EKU21377.1| cleavage and polyadenylation specificity factor subunit 2, partial
[Nannochloropsis gaditana CCMP526]
Length = 429
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 58/93 (62%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLG 69
L G ++ P CYLL+V E +LLDCGWD ++ L + + VLLS+PD++H+G
Sbjct: 24 LYGVLEHEPLCYLLKVGEATLLLDCGWDVQLDEALLEPLLPVLPQVQLVLLSFPDLSHMG 83
Query: 70 ALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLF 102
ALP++ PI+ T PV+KM QM +YDL+
Sbjct: 84 ALPWVAKHLRPGVPIYTTQPVFKMAQMVLYDLY 116
>gi|300121266|emb|CBK21646.2| unnamed protein product [Blastocystis hominis]
Length = 400
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/105 (37%), Positives = 60/105 (57%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M S K T L G ++ P C +LQ+D I+LDCGWDE D + +K ++ ++AVL+
Sbjct: 1 MPSTFKFTPLYGAENDGPVCSILQIDSIHIMLDCGWDERLETDMLSPIKDYIPLLNAVLI 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
S+ D HLGALPY+ + + PIF + + + M D+ + R
Sbjct: 61 SHADFLHLGALPYVYSRWDCNVPIFINKDAFLLARFCMEDVMENR 105
>gi|440797154|gb|ELR18249.1| cleavage and polyadenylation specificity factor subunit 2,
putative [Acanthamoeba castellanii str. Neff]
Length = 799
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/68 (50%), Positives = 52/68 (76%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MT+I+K T + G+ E P C LL++DE++ILLDCGWD+ F ++ ++ +K ++ IDAVLL
Sbjct: 1 MTAIVKYTPIYGSKTEGPFCSLLEIDEYRILLDCGWDDKFDIEALENVKAYIPKIDAVLL 60
Query: 61 SYPDVAHL 68
S+PD+ HL
Sbjct: 61 SHPDLLHL 68
>gi|260822493|ref|XP_002606636.1| hypothetical protein BRAFLDRAFT_120095 [Branchiostoma floridae]
gi|229291980|gb|EEN62646.1| hypothetical protein BRAFLDRAFT_120095 [Branchiostoma floridae]
Length = 375
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/51 (62%), Positives = 41/51 (80%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH 51
MTSI+K+T LSG DE+P CYLLQ DEF+ LLDCGWDE F+M +V +K++
Sbjct: 169 MTSILKLTPLSGVHDETPLCYLLQFDEFRFLLDCGWDEKFTMSYVDNMKKN 219
>gi|384484008|gb|EIE76188.1| hypothetical protein RO3G_00892 [Rhizopus delemar RA 99-880]
Length = 657
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 54 HIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLL 113
IDAVLLS+ D+ HLGA PY G++CP+++T+PV MG+M MYDL+Q R +
Sbjct: 6 QIDAVLLSHSDLGHLGAYPYARNHLGMTCPVYSTVPVVNMGKMCMYDLYQSRTNELEFKT 65
Query: 114 LTLE 117
TLE
Sbjct: 66 FTLE 69
>gi|393241063|gb|EJD48587.1| hypothetical protein AURDEDRAFT_183466 [Auricularia delicata
TFB-10046 SS5]
Length = 893
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 57/111 (51%), Gaps = 14/111 (12%)
Query: 4 IIKMTSLSGTMDES---PPCYLLQVDEFKILLDCG---WDEMFSMD--------FVKELK 49
+I T LSG ES P YLLQVD+ KILLDCG W+ F + + + L+
Sbjct: 1 MITFTPLSGDAHESNGNPLAYLLQVDDVKILLDCGSPDWNPEFIDEDGDAPWTPYCQALR 60
Query: 50 RHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
H ID VLLS+ D+ H G PY L P + T P+ MG++ + D
Sbjct: 61 SFAHSIDLVLLSHGDLQHCGLYPYAFAHWNLRAPAYCTYPIQAMGRVAVLD 111
>gi|392593024|gb|EIW82350.1| hypothetical protein CONPUDRAFT_54247 [Coniophora puteana
RWD-64-598 SS2]
Length = 926
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 20/113 (17%)
Query: 4 IIKMTSLSGTMDES---PPCYLLQVDEFKILLDCG---WDE--------------MFSMD 43
+I T LSG S P YLLQ+D+ KILLDCG W+ F D
Sbjct: 1 MITFTPLSGAARSSVTSPLAYLLQIDDVKILLDCGSPDWNPEKIPSTSTESDSSPYFWQD 60
Query: 44 FVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
+ LK+ +D VLLS+ D++H G Y + GL P+++T+PV MG++
Sbjct: 61 YCNALKQCAPSVDLVLLSHGDLSHCGLFAYAYSRWGLKAPVYSTLPVQAMGRI 113
>gi|443926973|gb|ELU45512.1| cleavage and polyadenylation specificity factor subunit
[Rhizoctonia solani AG-1 IA]
Length = 854
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 20/103 (19%)
Query: 18 PPCYLLQVDEFKILLDCG---WDEMFSMD-----------------FVKELKRHVHHIDA 57
P CY+LQ+D+ +ILLDCG W S + + ++L +D
Sbjct: 18 PLCYILQIDDVRILLDCGAPDWHPEPSTETSSTPGESQQVEPHWVRYCEQLAVQAPTVDL 77
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
VLLS+ DVAH+G PY K GL P +A++PV MG+M + D
Sbjct: 78 VLLSHADVAHVGLFPYAHAKYGLRAPAYASLPVQAMGRMAVLD 120
>gi|296424981|ref|XP_002842022.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638279|emb|CAZ86213.1| unnamed protein product [Tuber melanosporum]
Length = 975
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Query: 8 TSLSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDV 65
T L G +S C LL+++ K+L+D GWDE F + + EL+RH ID +LL++P +
Sbjct: 5 TPLLGAQSDSQACQSLLELENGIKVLIDVGWDESFDVKMLAELERHTPTIDLILLTHPTL 64
Query: 66 AHLGALPYMVGKCG--LSCPIFATIPVYKMGQMFMYDLF 102
AH+GA + S P+++T PV +G++ + D++
Sbjct: 65 AHMGAYAHACKHIPSFSSIPVYSTFPVSNLGRLLLQDIY 103
>gi|449549925|gb|EMD40890.1| hypothetical protein CERSUDRAFT_111471 [Ceriporiopsis subvermispora
B]
Length = 934
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/112 (38%), Positives = 58/112 (51%), Gaps = 19/112 (16%)
Query: 4 IIKMTSLSGTMDES---PPCYLLQVDEFKILLDCG---W---DEMFSMD----------F 44
+I T LSG+ S P YLLQVD+ +ILLDCG W D S D +
Sbjct: 1 MITFTPLSGSARTSSTIPLAYLLQVDDVRILLDCGSPDWCPEDASTSEDAEQKPQPWEKY 60
Query: 45 VKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
+ LK +D VLLS+ D++H G PY GL P++ T+PV MG++
Sbjct: 61 SEALKECAPTVDLVLLSHGDLSHSGLYPYAYAHWGLKAPVYTTLPVQAMGRI 112
>gi|167394445|ref|XP_001733538.1| cleavage and polyadenylation specificity factor [Entamoeba dispar
SAW760]
gi|165894673|gb|EDR22582.1| cleavage and polyadenylation specificity factor, putative
[Entamoeba dispar SAW760]
Length = 688
Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
I+ SL SP LL+++ KILLDCG D F+ + +++ + ID VL+S+ D
Sbjct: 3 IRTRSLFDGGKTSPVSALLEINSTKILLDCGVDCNFTREIIEKYDS-ISDIDIVLISHSD 61
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
+ H+GALPY+ K +C I+ T PV KMG + M + + +
Sbjct: 62 LRHMGALPYIANK-NPNCSIYTTDPVGKMGYLCMKEAIKTQ 101
>gi|336373839|gb|EGO02177.1| hypothetical protein SERLA73DRAFT_86401 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386654|gb|EGO27800.1| hypothetical protein SERLADRAFT_447017 [Serpula lacrymans var.
lacrymans S7.9]
Length = 930
Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 22/115 (19%)
Query: 4 IIKMTSLSGTMDES---PPCYLLQVDEFKILLDCG---WDEMFSMDFVK--ELKRHVHH- 54
+I T LSG S P YLLQVD+ +ILLDCG W S VK +L++H +H
Sbjct: 1 MITFTPLSGAARSSRTVPLAYLLQVDDVRILLDCGSPDWSPEPSSSAVKSEDLRQHSYHW 60
Query: 55 -------------IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
+D VLLS+ D+AH G Y + GL P ++T+PV G++
Sbjct: 61 EEYCQALRECSPTVDLVLLSHGDLAHTGLYAYAYSRWGLKAPAYSTLPVQATGRI 115
>gi|392568293|gb|EIW61467.1| hypothetical protein TRAVEDRAFT_162694 [Trametes versicolor
FP-101664 SS1]
Length = 943
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 13/108 (12%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCG---W---------DEMFS-MDFVKE 47
M + ++ +GT+ P YLLQVD+ +ILLDCG W D++ S +
Sbjct: 1 MITFTPLSGAAGTVRTVPLAYLLQVDDVRILLDCGSPDWCPEPSSEEGDDVLSWTKYCDA 60
Query: 48 LKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQ 95
LK +D VLLS+ D++H G PY GL+ P + T+P+ M +
Sbjct: 61 LKECAPSVDLVLLSHGDLSHSGLYPYAYSHWGLTAPAYTTLPIQAMAK 108
>gi|342320223|gb|EGU12165.1| Cleavage and polyadenylation specificity factor subunit
[Rhodotorula glutinis ATCC 204091]
Length = 1010
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 22/110 (20%)
Query: 18 PPCYLLQVDEFKILLDCG-------------------WDEMFS---MDFVKELKRHVHHI 55
PP YLL VD +ILLDCG DE S +++ L++ +
Sbjct: 14 PPTYLLTVDNAQILLDCGSYDKGREATLPSTSTSSALTDEPTSEQVTEYLSILRKLAPSL 73
Query: 56 DAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
+ VLLS+P + LG LP++ +CGL CP++ T+P +MG+ + + + R
Sbjct: 74 NLVLLSHPLLTSLGLLPFLRARCGLRCPVYGTLPTREMGRYAVEEWVEAR 123
>gi|164663111|ref|XP_001732677.1| hypothetical protein MGL_0452 [Malassezia globosa CBS 7966]
gi|159106580|gb|EDP45463.1| hypothetical protein MGL_0452 [Malassezia globosa CBS 7966]
Length = 862
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 16/99 (16%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHH----------------IDAVLLSYPD 64
YLL++D+ +ILLDCG E + +LK+ H ID VLL++ +
Sbjct: 38 YLLEIDQCRILLDCGAPEDLTFVDDTQLKQEGSHVWRGTLPDILERIGPTIDVVLLTHAE 97
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQ 103
++HLG Y GL CP++AT+PV MG++ M ++ +
Sbjct: 98 MSHLGLYAYAYANYGLQCPVYATLPVQTMGRLQMLEIVR 136
>gi|409049761|gb|EKM59238.1| hypothetical protein PHACADRAFT_249539 [Phanerochaete carnosa
HHB-10118-sp]
Length = 951
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/115 (36%), Positives = 56/115 (48%), Gaps = 22/115 (19%)
Query: 4 IIKMTSLSGTMDES---PPCYLLQVDEFKILLDCG---WDEMFSMDFVKE---------- 47
+I T LSG S P YLLQVD+ +ILLDCG W + VKE
Sbjct: 1 MITFTPLSGAARSSRTVPLAYLLQVDDVRILLDCGAPDWCPEDTSSAVKEEDLQETHHHW 60
Query: 48 ------LKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
LK + ID VL+S+ D+ H G PY + GL+ P + T+PV M ++
Sbjct: 61 EQYCQTLKEYAPTIDLVLMSHGDLQHTGLYPYAYSRWGLTAPAYTTLPVQAMARI 115
>gi|396500483|ref|XP_003845730.1| similar to cleavage and polyadenylation specificity factor subunit
2 [Leptosphaeria maculans JN3]
gi|312222311|emb|CBY02251.1| similar to cleavage and polyadenylation specificity factor subunit
2 [Leptosphaeria maculans JN3]
Length = 954
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 4 IIKMTSLSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
+ T L G + SP LL+ D +IL+D GWDE F ++ +KE+++HV I +LL+
Sbjct: 1 MFNFTPLLGALTSSPASQSLLEFDGGIQILVDIGWDESFDVEKLKEIEKHVPTISLILLT 60
Query: 62 YPDVAHLGALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLF 102
+ AHLGA + L P++AT PV +G+ + DL+
Sbjct: 61 HATTAHLGAYVHCCKNFPLFTRIPVYATKPVISLGRTLLQDLY 103
>gi|169599735|ref|XP_001793290.1| hypothetical protein SNOG_02691 [Phaeosphaeria nodorum SN15]
gi|160705309|gb|EAT89422.2| hypothetical protein SNOG_02691 [Phaeosphaeria nodorum SN15]
Length = 957
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 22 LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL 80
LL+ D KIL+D GWDE F + +KE++RHV + VLL++ AHLGA + L
Sbjct: 20 LLEFDGGIKILIDVGWDESFDVAKLKEIERHVSTLSFVLLTHATTAHLGAYVHCCKNFPL 79
Query: 81 --SCPIFATIPVYKMGQMFMYDLF 102
P++AT+PV +G+ + DL+
Sbjct: 80 FSRVPVYATVPVISLGRTLLQDLY 103
>gi|407929750|gb|EKG22561.1| RNA-metabolising metallo-beta-lactamase [Macrophomina phaseolina
MS6]
Length = 974
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 22 LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL 80
LL++D KIL+D GWDE F + +KEL+R + + VLL++ AHLGA + L
Sbjct: 20 LLELDGGIKILIDVGWDETFDAEKLKELERQIPTLSCVLLTHATTAHLGAFAHCCKHFPL 79
Query: 81 --SCPIFATIPVYKMGQMFMYDLF 102
PI+AT PV +G+ + DL+
Sbjct: 80 FTRIPIYATTPVISLGRTLLQDLY 103
>gi|409079696|gb|EKM80057.1| hypothetical protein AGABI1DRAFT_72888 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198540|gb|EKV48466.1| hypothetical protein AGABI2DRAFT_220282 [Agaricus bisporus var.
bisporus H97]
Length = 919
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 22/115 (19%)
Query: 4 IIKMTSLSGTM---DESPPCYLLQVDEFKILLDCGWDEMFS------------------- 41
+I T LSG SP YLLQVD+ ++LLDCG +
Sbjct: 1 MITFTPLSGAARSDSPSPLSYLLQVDDVRMLLDCGSPDWAPENDASTDGENESEEPRHSW 60
Query: 42 MDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
D+ + L+R ID VLLS+ D++H G PY + GL P ++T+PV G++
Sbjct: 61 SDYCETLRRIAPTIDLVLLSHGDLSHSGLYPYAYSRWGLKAPAYSTLPVQATGKI 115
>gi|389746898|gb|EIM88077.1| hypothetical protein STEHIDRAFT_94995 [Stereum hirsutum FP-91666
SS1]
Length = 968
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 12/91 (13%)
Query: 18 PPCYLLQVDEFKILLDCG-------WDEMFSMD-----FVKELKRHVHHIDAVLLSYPDV 65
P YLLQVD+ ILLDCG +D+ ++ + + LK ID VLLS+ D+
Sbjct: 18 PLAYLLQVDDVHILLDCGSPDWCPEFDDGLNVSAHWETYCQSLKEAAPTIDLVLLSHGDL 77
Query: 66 AHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
AH G PY + GL P ++T+PV M ++
Sbjct: 78 AHSGLYPYAYARWGLKAPAYSTLPVQAMARI 108
>gi|330920784|ref|XP_003299151.1| hypothetical protein PTT_10086 [Pyrenophora teres f. teres 0-1]
gi|311327303|gb|EFQ92764.1| hypothetical protein PTT_10086 [Pyrenophora teres f. teres 0-1]
Length = 953
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
+IL+D GWDE F+++ +KE++RHV I +LL++ AHLGA + L P++A
Sbjct: 28 QILIDVGWDEQFNVEKLKEIERHVPTISFILLTHATTAHLGAYVHCCKNFPLFTRIPVYA 87
Query: 87 TIPVYKMGQMFMYDLFQ 103
T PV +G+ + DL++
Sbjct: 88 TNPVISLGRTLLQDLYE 104
>gi|189192102|ref|XP_001932390.1| cleavage and polyadenylation specificity factor subunit 2
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187973996|gb|EDU41495.1| cleavage and polyadenylation specificity factor subunit 2
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 954
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
+IL+D GWDE F+++ +KE++RHV I +LL++ AHLGA + L P++A
Sbjct: 28 QILIDVGWDEQFNVEKLKEIERHVPTISFILLTHATTAHLGAYVHCCKNFPLFTRIPVYA 87
Query: 87 TIPVYKMGQMFMYDLFQ 103
T PV +G+ + DL++
Sbjct: 88 TNPVISLGRTLLQDLYE 104
>gi|395330425|gb|EJF62808.1| hypothetical protein DICSQDRAFT_135076 [Dichomitus squalens
LYAD-421 SS1]
Length = 943
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 18/111 (16%)
Query: 4 IIKMTSLSGTMDES---PPCYLLQVDEFKILLDCG---WDEMFSMDFVKE---------- 47
+I T LSG + P YLLQVD+ +ILLDCG W + D +E
Sbjct: 1 MITFTPLSGPARSARTVPLAYLLQVDDVRILLDCGSPDWCPETTQDGTEESELAPWEKYC 60
Query: 48 --LKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
LK +D VLLS+ D++H G PY GL+ P + T+PV M ++
Sbjct: 61 DSLKECASSVDLVLLSHGDLSHCGLYPYAHAHWGLTAPAYTTLPVQAMARV 111
>gi|170090732|ref|XP_001876588.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648081|gb|EDR12324.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 901
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 21/114 (18%)
Query: 4 IIKMTSLSG---TMDESPPCYLLQVDEFKILLDCG---WD----------EMFSMD---- 43
+I T LSG + + +P YLLQVD+ +ILLDCG W E S D
Sbjct: 1 MITFTPLSGAAHSSNATPLAYLLQVDDVRILLDCGSPDWSPEPSPFEEHPEHDSGDVPWT 60
Query: 44 -FVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
+ + L++ +D VLLS+ D+AH G P+ GL P + T+PV MG++
Sbjct: 61 KYCEALQKCAPTVDLVLLSHGDLAHCGLYPWAYTNWGLKAPAYTTLPVQAMGRI 114
>gi|452840080|gb|EME42018.1| hypothetical protein DOTSEDRAFT_133466 [Dothistroma septosporum
NZE10]
Length = 1101
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 4 IIKMTSLSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
+ T L G +SP LL++D KIL+D GWDE F + + +++HV + VLL+
Sbjct: 1 MFNFTPLLGAQSDSPASQSLLELDGGVKILVDVGWDETFDAEKLHAIEQHVSTLSIVLLT 60
Query: 62 YPDVAHLGALPYMVGKC-GLS-CPIFATIPVYKMGQMFMYDLFQ 103
+P + H+GA + G S P++AT PV +G+ + DL+
Sbjct: 61 HPTLDHIGAYAHCCKHIPGFSRIPVYATTPVVNLGRTLLADLYH 104
>gi|390601510|gb|EIN10904.1| hypothetical protein PUNSTDRAFT_112695 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 937
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 31/119 (26%)
Query: 4 IIKMTSLSG---TMDESPPCYLLQVDEFKILLDCG-----------------------WD 37
+I T LSG + +P YLLQVD+ +ILLDCG WD
Sbjct: 1 MITFTPLSGGAKSTRTTPLAYLLQVDDVRILLDCGSPDWCPERSPSSSAVTTESLSYPWD 60
Query: 38 EMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
E + L+ + +D VLLS+ D+AH G Y + GL P + T+PV M ++
Sbjct: 61 E-----YCDALRENAPSVDLVLLSHADLAHSGLYAYAYSRWGLKAPTYTTLPVQAMARV 114
>gi|302694097|ref|XP_003036727.1| hypothetical protein SCHCODRAFT_72177 [Schizophyllum commune H4-8]
gi|300110424|gb|EFJ01825.1| hypothetical protein SCHCODRAFT_72177 [Schizophyllum commune H4-8]
Length = 913
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 19/112 (16%)
Query: 4 IIKMTSLSG---TMDESPPCYLLQVDEFKILLDCG---W------------DEMFSMD-F 44
++ T L+G + +P C++LQVD+ KILLDCG W D +S + +
Sbjct: 1 MLTFTPLAGAACSNRTTPLCFILQVDDVKILLDCGSPDWSPEPSTSEVKVEDTSYSWEEY 60
Query: 45 VKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
L++H +D VLLS+ D+ H G PY + GL + T+PV M ++
Sbjct: 61 CSILRQHAASVDLVLLSHGDLQHSGLYPYAYSRWGLKAQTYTTLPVQAMARI 112
>gi|452004821|gb|EMD97277.1| hypothetical protein COCHEDRAFT_1163978 [Cochliobolus
heterostrophus C5]
Length = 948
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
+IL+D GWDE FS++ +KE++RHV + +LL++ AHLGA + L P++A
Sbjct: 28 QILIDVGWDEDFSVEQLKEIERHVPTLSFILLTHATTAHLGAYVHCCKNFPLFTRIPVYA 87
Query: 87 TIPVYKMGQMFMYDLFQ 103
T PV +G+ + DL++
Sbjct: 88 TNPVISLGRTLLQDLYE 104
>gi|451853389|gb|EMD66683.1| hypothetical protein COCSADRAFT_35187 [Cochliobolus sativus ND90Pr]
Length = 948
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
+IL+D GWDE FS++ +KE++RHV + +LL++ AHLGA + L P++A
Sbjct: 28 QILIDVGWDEDFSVEQLKEIERHVPTLSFILLTHATTAHLGAYVHCCKNFPLFTRIPVYA 87
Query: 87 TIPVYKMGQMFMYDLFQ 103
T PV +G+ + DL++
Sbjct: 88 TNPVISLGRTLLQDLYE 104
>gi|389601462|ref|XP_001565522.2| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|322505052|emb|CAM39016.2| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 829
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 5 IKMTSL-SGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYP 63
I++TS+ T +P YL+++D +IL DCGW+E F F+ +LK ++ + AV+LS P
Sbjct: 9 IRLTSVYECTTPNAPYAYLVEIDGVRILFDCGWNEEFDTSFLAKLKPYLATVHAVILSSP 68
Query: 64 DVAHLGALPYMV 75
+ GALP+++
Sbjct: 69 HITACGALPFVL 80
>gi|398016320|ref|XP_003861348.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
gi|322499574|emb|CBZ34647.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
Length = 818
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 5 IKMTSL-SGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYP 63
I+ TS+ T +P YL+++D +IL DCGW++ F F+ +LK H+ + AV+LS P
Sbjct: 9 IQFTSVYECTTPNAPYAYLIEIDGVRILFDCGWNDEFDTSFLSKLKPHLPTVHAVVLSSP 68
Query: 64 DVAHLGALPYMV 75
+ GALP+++
Sbjct: 69 HITACGALPFVL 80
>gi|146088435|ref|XP_001466050.1| putative cleavage and polyadenylation specificity factor
[Leishmania infantum JPCM5]
gi|134070152|emb|CAM68485.1| putative cleavage and polyadenylation specificity factor
[Leishmania infantum JPCM5]
Length = 819
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 5 IKMTSL-SGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYP 63
I+ TS+ T +P YL+++D +IL DCGW++ F F+ +LK H+ + AV+LS P
Sbjct: 9 IQFTSVYECTTPNAPYAYLIEIDGVRILFDCGWNDEFDTSFLSKLKPHLPTVHAVVLSSP 68
Query: 64 DVAHLGALPYMV 75
+ GALP+++
Sbjct: 69 HITACGALPFVL 80
>gi|326477880|gb|EGE01890.1| cleavage and polyadenylylation specificity factor [Trichophyton
equinum CBS 127.97]
Length = 1024
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
KIL+D GWDE F +KEL+RH+ + +LL++ +HLGA + L PI+A
Sbjct: 29 KILVDVGWDESFDTSVLKELERHIPTLSLILLTHATPSHLGAFVHCCRTYPLFMQIPIYA 88
Query: 87 TIPVYKMGQMFMYDLF 102
TIPV G+ ++ +L+
Sbjct: 89 TIPVIAFGRTYLQNLY 104
>gi|326473038|gb|EGD97047.1| cleavage and polyadenylylation specificity factor [Trichophyton
tonsurans CBS 112818]
Length = 1024
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
KIL+D GWDE F +KEL+RH+ + +LL++ +HLGA + L PI+A
Sbjct: 29 KILVDVGWDESFDTSVLKELERHIPTLSLILLTHATPSHLGAFVHCCRTYPLFMQIPIYA 88
Query: 87 TIPVYKMGQMFMYDLF 102
TIPV G+ ++ +L+
Sbjct: 89 TIPVIAFGRTYLQNLY 104
>gi|327308534|ref|XP_003238958.1| cleavage and polyadenylylation specificity factor [Trichophyton
rubrum CBS 118892]
gi|326459214|gb|EGD84667.1| cleavage and polyadenylylation specificity factor [Trichophyton
rubrum CBS 118892]
Length = 1024
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
KIL+D GWDE F +KEL+RH+ + +LL++ +HLGA + L PI+A
Sbjct: 29 KILVDVGWDESFDTSVLKELERHIPTLSLILLTHATPSHLGAFVHCCRTYPLFTQIPIYA 88
Query: 87 TIPVYKMGQMFMYDLF 102
TIPV G+ ++ +L+
Sbjct: 89 TIPVIAFGRTYLQNLY 104
>gi|367047989|ref|XP_003654374.1| hypothetical protein THITE_2117338 [Thielavia terrestris NRRL 8126]
gi|347001637|gb|AEO68038.1| hypothetical protein THITE_2117338 [Thielavia terrestris NRRL 8126]
Length = 1015
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 4 IIKMTSLSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
+ T L G + ES LL++D K+L+D GWDE F + ++EL++H+ + +LL+
Sbjct: 1 MFSFTPLQGALSESTASQSLLELDGGVKVLVDVGWDESFDAERLRELEKHIPTLSLILLT 60
Query: 62 YPDVAHLGALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLF 102
+ V HLGA + L P++AT PV +G+ DL+
Sbjct: 61 HATVDHLGAYAHCCKHFPLFTRIPVYATRPVIDLGRTLTQDLY 103
>gi|302661813|ref|XP_003022569.1| hypothetical protein TRV_03308 [Trichophyton verrucosum HKI 0517]
gi|291186522|gb|EFE41951.1| hypothetical protein TRV_03308 [Trichophyton verrucosum HKI 0517]
Length = 1024
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
KIL+D GWDE F +KEL+RH+ + +LL++ +HLGA + L PI+A
Sbjct: 29 KILVDVGWDESFDTSVLKELERHIPTLSLILLTHATPSHLGAFVHCCRAYPLFTQIPIYA 88
Query: 87 TIPVYKMGQMFMYDLF 102
TIPV G+ ++ +L+
Sbjct: 89 TIPVIAFGRTYLQNLY 104
>gi|342185150|emb|CCC94633.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 308
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 5 IKMTSLSGTMD------ESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAV 58
IK+T++ G +P YLL++D +IL+DCGWD+ FS+ ++ L ++ ++ AV
Sbjct: 9 IKLTNIYGAPSSDAFHPNTPMSYLLEIDGVRILMDCGWDDKFSVSYLDALSPYLGNLHAV 68
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMG 94
L S P++ GALP+++ + + A KMG
Sbjct: 69 LFSSPELRSCGALPFVMERIPPGTYVSAAGATSKMG 104
>gi|453084596|gb|EMF12640.1| Metallo-hydrolase/oxidoreductase [Mycosphaerella populorum SO2202]
Length = 964
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 4 IIKMTSLSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
+ T L G +SP LL++D KIL+D GWDE F + + L+RHV + VLL+
Sbjct: 1 MFHFTPLLGAQSDSPASQSLLELDGGVKILVDVGWDETFDAEQLHALERHVATLSVVLLT 60
Query: 62 YPDVAHLGALPYMVGKCG--LSCPIFATIPVYKMGQMFMYDLF 102
+ + HLGA + + P++AT PV +G+ + DL+
Sbjct: 61 HATLDHLGAYAHCCKHIPHFRNVPVYATTPVVNLGRTLITDLY 103
>gi|315054255|ref|XP_003176502.1| cleavage and polyadenylation specificity factor subunit 2
[Arthroderma gypseum CBS 118893]
gi|311338348|gb|EFQ97550.1| cleavage and polyadenylation specificity factor subunit 2
[Arthroderma gypseum CBS 118893]
Length = 1024
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
KIL+D GWDE F +KEL+RH+ + +LL++ +HLGA + L PI+A
Sbjct: 29 KILVDVGWDESFDTSALKELERHIPTLSLILLTHATPSHLGAFVHCCRTYPLFTQIPIYA 88
Query: 87 TIPVYKMGQMFMYDLF 102
TIPV G+ ++ +L+
Sbjct: 89 TIPVIAFGRTYLQNLY 104
>gi|171679503|ref|XP_001904698.1| hypothetical protein [Podospora anserina S mat+]
gi|170939377|emb|CAP64605.1| unnamed protein product [Podospora anserina S mat+]
Length = 967
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 12/101 (11%)
Query: 10 LSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAH 67
L G + ES LL++D KIL+D GWDE F+++ ++EL++ V + +LL++ VAH
Sbjct: 7 LQGALSESTASQSLLELDGGVKILVDVGWDETFAVEKLRELEKQVPTLSFILLTHATVAH 66
Query: 68 LGALPYMVGKCGLSCPIFATIPVY------KMGQMFMYDLF 102
+GA + C P+F+TIP Y +G+ DL+
Sbjct: 67 IGAYAH----CCKHIPLFSTIPAYATRPVIDLGRTLTQDLY 103
>gi|169861678|ref|XP_001837473.1| cleavage and polyadenylation specificity factor subunit
[Coprinopsis cinerea okayama7#130]
gi|116501494|gb|EAU84389.1| cleavage and polyadenylation specificity factor subunit
[Coprinopsis cinerea okayama7#130]
Length = 926
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 37/125 (29%)
Query: 4 IIKMTSLSGTMDE---SPPCYLLQVDEFKILLDCGWDEMFSMDFVKE------------- 47
+I T L+G+ +P Y+LQVD+ +ILLDCG S D+V+E
Sbjct: 1 MITFTPLAGSAKSKSTTPLSYVLQVDDVRILLDCG-----SPDWVQEPSPFQDGADMEDD 55
Query: 48 ----------------LKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVY 91
+K+ ID VLLS+ D+AH G P+ + GL+ P + T+PV
Sbjct: 56 SNVKSTSPPWQAYCEAMKKVAPTIDLVLLSHGDLAHCGLYPWAYSRWGLTAPAYTTLPVQ 115
Query: 92 KMGQM 96
MG++
Sbjct: 116 AMGRI 120
>gi|402226056|gb|EJU06116.1| hypothetical protein DACRYDRAFT_73414 [Dacryopinax sp. DJM-731 SS1]
Length = 925
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 26/119 (21%)
Query: 4 IIKMTSLSGTMDE-SPP---CYLLQVDEFKILLDCG---W-----------DEMFSM--- 42
+I T L G+ S P CYLLQ+D+ ++LLDCG W DE S
Sbjct: 1 MIVFTPLCGSAQSTSVPNAFCYLLQIDDIRVLLDCGAPDWRLGAGEDVEGEDEAASRRET 60
Query: 43 -----DFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
+++ L R ID VL ++ + H+G Y K GLS P FAT+PV +G++
Sbjct: 61 KKWWSEYLSLLTRTAPEIDLVLFTHGSLQHIGLYSYARAKLGLSAPAFATLPVQALGRI 119
>gi|157870438|ref|XP_001683769.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
gi|68126836|emb|CAJ04467.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
Length = 828
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 13 TMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALP 72
T +P YL+ +D +IL DCGW++ F F+ +LK H+ + AV+LS P + GALP
Sbjct: 18 TTPNAPYAYLVDIDGVRILFDCGWNDEFDTSFLNKLKPHLPTVHAVVLSSPHITACGALP 77
Query: 73 YMV 75
+++
Sbjct: 78 FVL 80
>gi|340518710|gb|EGR48950.1| predicted protein [Trichoderma reesei QM6a]
Length = 962
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 10 LSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAH 67
L G + ES LL++D K+L+D GWDE FS D ++EL++ V + +LL++ V+H
Sbjct: 7 LQGALSESLASQSLLELDGGVKVLVDLGWDETFSSDKLEELEKQVPTLSLILLTHATVSH 66
Query: 68 LGALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLF 102
L A + L P++AT PV +G+ DL+
Sbjct: 67 LAAYAHCCKNIALFTRIPVYATRPVIDLGRTLTQDLY 103
>gi|398396344|ref|XP_003851630.1| hypothetical protein MYCGRDRAFT_109995 [Zymoseptoria tritici
IPO323]
gi|339471510|gb|EGP86606.1| hypothetical protein MYCGRDRAFT_109995 [Zymoseptoria tritici
IPO323]
Length = 1108
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 4 IIKMTSLSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
+ T+L G +SP LL++D K+L+D GWDE F + ++ L++HV + +LL+
Sbjct: 1 MFNFTALLGAQSDSPASQSLLELDGGVKLLVDVGWDETFDAEKLQTLEKHVSTLSVILLT 60
Query: 62 YPDVAHLGALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLF 102
+ V H+GA + P++AT PV +G+ + D++
Sbjct: 61 HATVEHIGAYAHCCKHIPAFNKIPVYATTPVINLGRTLIADIY 103
>gi|378733596|gb|EHY60055.1| hypothetical protein HMPREF1120_08027 [Exophiala dermatitidis
NIH/UT8656]
Length = 948
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 10 LSGTMDESPPCYLLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHL 68
L D LL++D KIL+D GWDE F + E+++H + +LL++P ++H+
Sbjct: 8 LGAQSDSRASQSLLELDGGVKILVDVGWDERFDTRQLTEIEKHTSTLSFILLTHPTISHI 67
Query: 69 GALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLF 102
GA + L PI+AT PV G+ + DL+
Sbjct: 68 GAFAHCCKHIPLFSQVPIYATPPVIAFGRTLLEDLY 103
>gi|392862603|gb|EAS36741.2| cleavage and polyadenylylation specificity factor [Coccidioides
immitis RS]
Length = 1026
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATI 88
KIL+D GWDE F +KEL++H+ + +LL++ +H+GA Y C + P+FA I
Sbjct: 29 KILIDVGWDETFDPSALKELEKHIPTLSLILLTHATPSHIGAFVY----CCKTFPLFAQI 84
Query: 89 PVY------KMGQMFMYDLF 102
PVY G+ + DL+
Sbjct: 85 PVYATYPVISFGRSLLQDLY 104
>gi|320034772|gb|EFW16715.1| cleavage and polyadenylylation specificity factor [Coccidioides
posadasii str. Silveira]
Length = 1026
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATI 88
KIL+D GWDE F +KEL++H+ + +LL++ +H+GA Y C + P+FA I
Sbjct: 29 KILIDVGWDETFDPSALKELEKHIPTLSLILLTHATPSHIGAFVY----CCKTFPLFAQI 84
Query: 89 PVY------KMGQMFMYDLF 102
PVY G+ + DL+
Sbjct: 85 PVYATYPVISFGRSLLQDLY 104
>gi|303310723|ref|XP_003065373.1| hypothetical protein CPC735_045980 [Coccidioides posadasii C735
delta SOWgp]
gi|240105035|gb|EER23228.1| hypothetical protein CPC735_045980 [Coccidioides posadasii C735
delta SOWgp]
Length = 1026
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATI 88
KIL+D GWDE F +KEL++H+ + +LL++ +H+GA Y C + P+FA I
Sbjct: 29 KILIDVGWDETFDPSALKELEKHIPTLSLILLTHATPSHIGAFVY----CCKTFPLFAQI 84
Query: 89 PVY------KMGQMFMYDLF 102
PVY G+ + DL+
Sbjct: 85 PVYATYPVISFGRSLLQDLY 104
>gi|358385845|gb|EHK23441.1| hypothetical protein TRIVIDRAFT_37526 [Trichoderma virens Gv29-8]
Length = 957
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 10 LSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAH 67
L G + ES LL++D K+L+D GWDE FS D ++EL++ V + +LL++ V+H
Sbjct: 7 LQGALSESLASQSLLELDGGVKVLVDLGWDESFSSDKLEELEKQVPTLSLILLTHATVSH 66
Query: 68 LGALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLF 102
L A + L P++AT PV +G+ DL+
Sbjct: 67 LAAYAHCCKNIALFTRIPVYATRPVIDLGRTLTQDLY 103
>gi|340966678|gb|EGS22185.1| putative cleavage and polyadenylation protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 998
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 4 IIKMTSLSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
+ T L G ES LL++D K+L+D GWDE F ++EL++HV + +LL+
Sbjct: 1 MFSFTPLLGARSESTASQSLLELDGGVKVLIDVGWDESFDPSLLRELEKHVPTLSLILLT 60
Query: 62 YPDVAHLGALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLF 102
+ + HLGA + L P++AT PV +G+ DL+
Sbjct: 61 HATINHLGAYAHCCKHFPLFTRIPVYATRPVIDLGRTLTQDLY 103
>gi|440632320|gb|ELR02239.1| hypothetical protein GMDG_05312 [Geomyces destructans 20631-21]
Length = 988
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
K+L+D GWDE F ++ ++ L++HV I VLL++ V HL A + L PI+A
Sbjct: 28 KVLIDVGWDETFDVEKLRNLEKHVPAISIVLLTHATVGHLAAYAHCCKHFPLFTRIPIYA 87
Query: 87 TIPVYKMGQMFMYDLF 102
T PV +G+ + DL+
Sbjct: 88 TTPVISLGRTLLQDLY 103
>gi|401423165|ref|XP_003876069.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322492310|emb|CBZ27584.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 822
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 5 IKMTSL-SGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYP 63
I+ TS+ T +P YL+++D +IL DCGW++ F F+ +LK ++ + AV+LS P
Sbjct: 9 IQFTSVYECTTPNAPYAYLVEIDGVRILFDCGWNDEFDTSFLDKLKPYLPTVHAVILSSP 68
Query: 64 DVAHLGALPYMV 75
+ GALP+++
Sbjct: 69 HITACGALPFVL 80
>gi|116203607|ref|XP_001227614.1| hypothetical protein CHGG_09687 [Chaetomium globosum CBS 148.51]
gi|88175815|gb|EAQ83283.1| hypothetical protein CHGG_09687 [Chaetomium globosum CBS 148.51]
Length = 956
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 4 IIKMTSLSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
+ + L G + ES LL++D K+L+D GWDE F ++ ++EL++ + + +LL+
Sbjct: 1 MFTFSPLQGALSESTASQSLLELDGGVKVLIDVGWDEAFDVEKLRELEKQIPTLSLILLT 60
Query: 62 YPDVAHLGALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLF 102
+ V HLGA + L P++AT PV +G+ DL+
Sbjct: 61 HATVDHLGAYAHCCKNFPLFTRVPVYATRPVIDLGRTLTQDLY 103
>gi|407847992|gb|EKG03521.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 883
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 3 SIIKMTSLSG--TMD----ESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHID 56
S IK+T+L G T D +P L+++D +ILLDCGW++ F + F+ L ++ +
Sbjct: 88 SSIKLTNLYGAPTGDTYHPSTPFANLIEIDGVRILLDCGWNDEFDVSFLDTLMPYLGDVH 147
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMG 94
AVL S P++ GALP++V + A KMG
Sbjct: 148 AVLFSTPELVSCGALPFVVEHISTGTCVAAAGSTAKMG 185
>gi|367031802|ref|XP_003665184.1| hypothetical protein MYCTH_2308652 [Myceliophthora thermophila ATCC
42464]
gi|347012455|gb|AEO59939.1| hypothetical protein MYCTH_2308652 [Myceliophthora thermophila ATCC
42464]
Length = 1035
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 4 IIKMTSLSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
+ + L G + ES LL++D K+L+D GWDE F ++ ++EL++ V + +LL+
Sbjct: 1 MFTFSPLQGALTESAASQSLLELDGGVKVLVDVGWDETFDVEKLRELEKQVPTLSLILLT 60
Query: 62 YPDVAHLGALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLF 102
+ + HLGA + L P++AT PV +G+ DL+
Sbjct: 61 HATINHLGAYAHCCKNFPLFTRIPVYATRPVIDLGRTLTQDLY 103
>gi|389638668|ref|XP_003716967.1| hypothetical protein MGG_06570 [Magnaporthe oryzae 70-15]
gi|351642786|gb|EHA50648.1| hypothetical protein MGG_06570 [Magnaporthe oryzae 70-15]
gi|440474177|gb|ELQ42934.1| cleavage and polyadenylation specificity factor subunit 2
[Magnaporthe oryzae Y34]
gi|440484966|gb|ELQ64966.1| cleavage and polyadenylation specificity factor subunit 2
[Magnaporthe oryzae P131]
Length = 962
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 12/107 (11%)
Query: 4 IIKMTSLSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
+ + L G + E+ LL++D K+L+D GWDE F ++ +KE+++ V + +LL+
Sbjct: 1 MFTFSPLQGALSEATASQSLLELDGGVKVLIDIGWDETFDVEKLKEVEKQVPTLSLILLT 60
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVY------KMGQMFMYDLF 102
+ V HL AL + C + P+FA IP+Y +G+ + DL+
Sbjct: 61 HATVPHLSALVH----CCKNFPLFARIPIYATQPAIDLGRTLIQDLY 103
>gi|403346510|gb|EJY72653.1| putative cleavage and polyadenylation specificity factor subunit 2
[Oxytricha trifallax]
Length = 853
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 22 LLQVDEFKILLDCGWDEMFSMDFVKELKRHV--HHIDAVLLSYPDVAHLGALPYMV--GK 77
LL+V + ILLDCG +E +S+D + L+ + ++D + LS+ + H+GA+PY+ G
Sbjct: 58 LLKVGDLTILLDCGANESYSLDQLNLLRDIIKEQNVDFIFLSHASMMHVGAIPYLQANGC 117
Query: 78 CGLSCPIFATIPVYKMGQMFMYDLF 102
+ +T P KMG + MY+ F
Sbjct: 118 LDFQLKVMSTSPTAKMGALTMYEFF 142
>gi|320590943|gb|EFX03384.1| polyadenylation specificity factor [Grosmannia clavigera kw1407]
Length = 1036
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 22 LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG- 79
LL++D K+L+D GWDE F + ++EL++ V I VLL++ V+H+ A +
Sbjct: 20 LLELDGGVKVLIDVGWDESFDAEKLRELEKQVPTISLVLLTHATVSHIAAFAHCCKNFPQ 79
Query: 80 -LSCPIFATIPVYKMGQMFMYDLF 102
+ PIFAT PV +G+ + DL+
Sbjct: 80 FVRIPIFATKPVIDLGRTLLQDLY 103
>gi|71656590|ref|XP_816840.1| cleavage and polyadenylation specificity factor [Trypanosoma cruzi
strain CL Brener]
gi|50363263|gb|AAT75334.1| cleavage polyadenylation specificity factor CPSF100 [Trypanosoma
cruzi]
gi|70881994|gb|EAN94989.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 802
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 6/98 (6%)
Query: 3 SIIKMTSLSG--TMD----ESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHID 56
S IK+T+L G T D +P L+++D +ILLDCGW++ F ++F+ L ++ +
Sbjct: 7 SSIKLTNLYGAPTGDTYHPSTPFANLIEIDGVRILLDCGWNDEFDVNFLDALMPYLGDVH 66
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMG 94
AVL S P++ GALP+++ + A KMG
Sbjct: 67 AVLFSTPELVSCGALPFVMEHIPTGTCVAAAGSTAKMG 104
>gi|410478564|ref|YP_006766201.1| RNA-processing exonuclease [Leptospirillum ferriphilum ML-04]
gi|406773816|gb|AFS53241.1| putative RNA-processing exonuclease [Leptospirillum ferriphilum
ML-04]
Length = 479
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 20 CYLLQVDEFKILLDCGW----DEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMV 75
C+LL VD F+IL+DCG DE+FS + +K I AV+L++ + H G LP +V
Sbjct: 16 CHLLDVDGFRILIDCGLFQGEDELFSSN-LKPFGFEPSSISAVILTHAHLDHCGRLPTLV 74
Query: 76 GKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTF 109
+ G P++AT P + ++ ++D ++ + F
Sbjct: 75 -RQGFRGPVYATSPTRYLAEIVLWDAAHLQEERF 107
>gi|424868917|ref|ZP_18292646.1| Putative metallo-beta-lactamase family protein [Leptospirillum sp.
Group II 'C75']
gi|387220958|gb|EIJ75564.1| Putative metallo-beta-lactamase family protein [Leptospirillum sp.
Group II 'C75']
Length = 393
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 20 CYLLQVDEFKILLDCGW----DEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMV 75
C+LL VD F+IL+DCG DE+FS + +K I AV+L++ + H G LP +V
Sbjct: 16 CHLLDVDGFRILIDCGLFQGEDELFSSN-LKPFGFEPSSISAVILTHAHLDHCGRLPTLV 74
Query: 76 GKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTF 109
+ G P++AT P + ++ ++D ++ + F
Sbjct: 75 -RQGFRGPVYATSPTRYLAEIVLWDAAHLQEERF 107
>gi|323451639|gb|EGB07515.1| hypothetical protein AURANDRAFT_27422, partial [Aureococcus
anophagefferens]
Length = 178
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 17 SPPCY--LLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
P Y +L V + ILLDCG D F + + +D VL+S+ ++ HLGAL
Sbjct: 9 GAPAYGSVLVVGDVTILLDCGCDVGFEEACFERIGAVAKDVDLVLISHHELRHLGALAAA 68
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLK 111
+ GL PI+AT+PV K+G + MY+ + +F +
Sbjct: 69 KARYGLRAPIYATLPVTKLGFVTMYEAWAGYRASFGR 105
>gi|452981499|gb|EME81259.1| hypothetical protein MYCFIDRAFT_140021 [Pseudocercospora fijiensis
CIRAD86]
Length = 938
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 4 IIKMTSLSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
+ T L G SP LL++D KIL+D GWDE F ++ L++HV + +LL+
Sbjct: 1 MFNFTPLLGAQTASPASQSLLELDGGVKILVDVGWDETFDTGKLQALEKHVSTLSVILLT 60
Query: 62 YPDVAHLGALPYMVGKC-GLS-CPIFATIPVYKMGQMFMYDLF 102
+ + H+GA + G + P++AT PV +G+ D++
Sbjct: 61 HATIEHIGAYAHCCKHVPGFAKVPVYATTPVVNLGRTLAADIY 103
>gi|345563127|gb|EGX46131.1| hypothetical protein AOL_s00110g295 [Arthrobotrys oligospora ATCC
24927]
Length = 982
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 4/63 (6%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATI 88
KIL+DCGW E F++D ++++++H I +LL++P ++H+G+ + C P F+ I
Sbjct: 28 KILVDCGWSEPFNVDDLQQIEKHAPTISLILLTHPTLSHIGSYAH----CCAHIPHFSRI 83
Query: 89 PVY 91
PVY
Sbjct: 84 PVY 86
>gi|388579716|gb|EIM20037.1| hypothetical protein WALSEDRAFT_61199 [Wallemia sebi CBS 633.66]
Length = 844
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 18 PPCYLLQVDEFKILLDCGWDEMFSMD-----FVKELKRHVHHIDAVLLSYPDVAHLGALP 72
P CYLL++++ +ILLDCG + + D + K+L+ ID VLLS+ H G
Sbjct: 24 PFCYLLEIEDARILLDCGSRDWEANDESAFYYEKKLREIAPTIDLVLLSHASTKHSGFYA 83
Query: 73 YMVGKCGLSCPIFATIPVYKMGQM 96
Y GL CP + ++PV ++ ++
Sbjct: 84 YAYTHYGLKCPAYCSLPVKELARL 107
>gi|124515744|gb|EAY57253.1| putative metallo-beta-lactamase family protein [Leptospirillum
rubarum]
gi|206602248|gb|EDZ38730.1| Putative metallo-beta-lactamase family protein [Leptospirillum sp.
Group II '5-way CG']
Length = 479
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 20 CYLLQVDEFKILLDCGW----DEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMV 75
C+LL VD F+IL+DCG DE+FS + +K I AV+L++ + H G LP +V
Sbjct: 16 CHLLDVDGFRILIDCGLFQGEDELFSSN-LKPFGFEPSSISAVILTHAHLDHCGRLPTLV 74
Query: 76 GKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTF 109
+ G P++AT P + ++ ++D ++ + F
Sbjct: 75 -RQGFRGPVYATSPTRYLTEIVLWDAAHLQEERF 107
>gi|358394479|gb|EHK43872.1| hypothetical protein TRIATDRAFT_79096 [Trichoderma atroviride IMI
206040]
Length = 957
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 10 LSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAH 67
L G + ES LL++D K+L+D GWDE FS + ++EL++ V + +LL++ +H
Sbjct: 7 LQGALSESLASQSLLELDGGVKVLVDLGWDESFSSEKLEELEKQVPTLSLILLTHATTSH 66
Query: 68 LGALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLF 102
L A + L P++AT PV +G+ DL+
Sbjct: 67 LAAYAHCCKNIALFTRIPVYATRPVIDLGRTLTQDLY 103
>gi|242786013|ref|XP_002480717.1| cleavage and polyadenylylation specificity factor, putative
[Talaromyces stipitatus ATCC 10500]
gi|218720864|gb|EED20283.1| cleavage and polyadenylylation specificity factor, putative
[Talaromyces stipitatus ATCC 10500]
Length = 1017
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATI 88
KIL+D GWDE F + + EL++H+ + +LL++ ++H+GA + C + P+F I
Sbjct: 29 KILVDVGWDETFDVLELAELEKHIPTLSLILLTHATISHIGAFAH----CCKTFPLFTQI 84
Query: 89 PVYKMG 94
PVY G
Sbjct: 85 PVYATG 90
>gi|71754401|ref|XP_828115.1| cleavage and polyadenylation specificity factor [Trypanosoma
brucei]
gi|70833501|gb|EAN79003.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 818
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 5 IKMTSLSGTMDES------PPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAV 58
IK+T++ G P YLL++D +IL+DCGW++ F ++ L ++ + AV
Sbjct: 9 IKLTNIYGAPSGDAYHPSIPMAYLLEIDGVRILMDCGWNDGFETSYLDALLPYLGDLHAV 68
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMG 94
L S P+++ GALP+++ + A KMG
Sbjct: 69 LFSTPELSSCGALPFVMEHITAETHVAAAGATAKMG 104
>gi|325088985|gb|EGC42295.1| cleavage and polyadenylation specific subunit [Ajellomyces
capsulatus H88]
Length = 1010
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
KIL+D GWDE F + + EL+R + + VLL++ +H+GA + L PI+A
Sbjct: 29 KILVDVGWDESFDVSALAELERQIPTLSLVLLTHATPSHIGAFAHCCKTFPLFNQIPIYA 88
Query: 87 TIPVYKMGQMFMYDLF 102
T PV +G+ + DL+
Sbjct: 89 TSPVIALGRTLLQDLY 104
>gi|261333901|emb|CBH16895.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 818
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 5 IKMTSLSGTMDES------PPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAV 58
IK+T++ G P YLL++D +IL+DCGW++ F ++ L ++ + AV
Sbjct: 9 IKLTNIYGAPSGDAYHPSIPMAYLLEIDGVRILMDCGWNDGFETSYLDALLPYLGDLHAV 68
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMG 94
L S P+++ GALP+++ + A KMG
Sbjct: 69 LFSTPELSSCGALPFVMEHITAETHVAAAGATAKMG 104
>gi|240280758|gb|EER44262.1| cleavage and polyadenylation specificity factor subunit 2
[Ajellomyces capsulatus H143]
Length = 1010
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
KIL+D GWDE F + + EL+R + + VLL++ +H+GA + L PI+A
Sbjct: 29 KILVDVGWDESFDVSALAELERQIPTLSLVLLTHATPSHIGAFAHCCKTFPLFNQIPIYA 88
Query: 87 TIPVYKMGQMFMYDLF 102
T PV +G+ + DL+
Sbjct: 89 TSPVIALGRTLLQDLY 104
>gi|225560694|gb|EEH08975.1| cleavage and polyadenylation specificity factor subunit 2
[Ajellomyces capsulatus G186AR]
Length = 1010
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
KIL+D GWDE F + + EL+R + + VLL++ +H+GA + L PI+A
Sbjct: 29 KILVDVGWDESFDVSALAELERQIPTLSLVLLTHATPSHIGAFAHCCKTFPLFNQIPIYA 88
Query: 87 TIPVYKMGQMFMYDLF 102
T PV +G+ + DL+
Sbjct: 89 TSPVIALGRTLLQDLY 104
>gi|154278321|ref|XP_001539974.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150413559|gb|EDN08942.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 977
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
KIL+D GWDE F + + EL+R + + VLL++ +H+GA + L PI+A
Sbjct: 29 KILVDVGWDESFDVSALAELERQIPTLSLVLLTHATPSHIGAFAHCCKTFPLFNQIPIYA 88
Query: 87 TIPVYKMGQMFMYDLF 102
T PV +G+ + DL+
Sbjct: 89 TSPVIALGRTLLQDLY 104
>gi|429857613|gb|ELA32471.1| cleavage and polyadenylylation specificity [Colletotrichum
gloeosporioides Nara gc5]
Length = 962
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 10 LSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAH 67
L G + ES +L++D KIL+D GWDE F ++ ++EL++ V + +LL++ +H
Sbjct: 7 LQGALSESSASQSILELDGGVKILIDLGWDESFDVEKLRELEKQVPTLSIILLTHATTSH 66
Query: 68 LGALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLF 102
L A + L P++AT PV +G+ DL+
Sbjct: 67 LAAFAHCCKNFPLFTRIPVYATRPVIDLGRTLTQDLY 103
>gi|402080824|gb|EJT75969.1| hypothetical protein GGTG_05894 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 974
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 12/107 (11%)
Query: 4 IIKMTSLSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
+ + L G + E+ LL++D K+L+D GWDE ++ +KEL++ V + +LL+
Sbjct: 1 MFTFSPLQGALSEATASQSLLELDGGVKVLIDVGWDETLDIEKLKELEKQVPTLSLILLT 60
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVY------KMGQMFMYDLF 102
+ V HL A + C P+FA IPVY +G+ + DL+
Sbjct: 61 HATVPHLSAFVH----CCKHFPLFARIPVYATQPVIDLGRTLIQDLY 103
>gi|342882935|gb|EGU83499.1| hypothetical protein FOXB_05909 [Fusarium oxysporum Fo5176]
Length = 950
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 10 LSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAH 67
L G + +SP LL++D K+L+D GWDE F ++ +KE+++ V + +L+++ +H
Sbjct: 7 LQGALSDSPASQSLLELDGGVKVLVDLGWDETFDVEKLKEIEKQVTTLSLILVTHATASH 66
Query: 68 LGALPYMVGKCG--LSCPIFATIPVYKMGQMFMYDLF 102
L A + P++AT PV +G+ + DL+
Sbjct: 67 LAAYAHCCKNIPQFTRIPVYATRPVIDLGRTLIQDLY 103
>gi|255934198|ref|XP_002558380.1| Pc12g15810 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582999|emb|CAP81208.1| Pc12g15810 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 893
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 22 LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL 80
+L++D KIL+D GWDE F+ + EL++H+ + +LL++ AH+GAL + L
Sbjct: 21 ILELDGGIKILVDVGWDEKFNTLDLAELEKHIPTLSLILLTHATPAHIGALVHCCRTFPL 80
Query: 81 --SCPIFATIPVYKMGQMFMYDLF 102
PI+AT PV G+ + DL+
Sbjct: 81 FTQIPIYATNPVIAFGRTLLQDLY 104
>gi|212543221|ref|XP_002151765.1| cleavage and polyadenylylation specificity factor, putative
[Talaromyces marneffei ATCC 18224]
gi|210066672|gb|EEA20765.1| cleavage and polyadenylylation specificity factor, putative
[Talaromyces marneffei ATCC 18224]
Length = 1015
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
KIL+D GWDE F + + EL++H+ + VLL++ ++H+GA + L P++A
Sbjct: 29 KILVDVGWDETFDVLELAELEKHIPTLSLVLLTHATISHIGAFAHCCKIFPLFTQIPVYA 88
Query: 87 TIPVYKMGQMFMYDLF 102
T PV +G+ + D++
Sbjct: 89 TGPVISLGRTLLQDMY 104
>gi|393215649|gb|EJD01140.1| cleavage and polyadenylation specificity factor subunit
[Fomitiporia mediterranea MF3/22]
Length = 922
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 21/114 (18%)
Query: 4 IIKMTSLSGTMDES---PPCYLLQVDEFKILLDCG---W--------------DEMFSMD 43
+I T LSG S P YLLQVD+ +ILLDCG W + FS +
Sbjct: 1 MITFTPLSGGARLSKTIPLSYLLQVDDVRILLDCGSPGWCPEHAIAGSEDSSDSQSFSWE 60
Query: 44 -FVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
+ K LK +D VL+S+ D+ H G Y GL P + T+PV ++
Sbjct: 61 SYCKALKECAPTVDLVLISHGDLQHAGLYAYAYAHWGLRAPTYTTLPVQATARL 114
>gi|310799284|gb|EFQ34177.1| RNA-metabolising metallo-beta-lactamase [Glomerella graminicola
M1.001]
Length = 984
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 10 LSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAH 67
L G + ES +L++D KIL+D GWDE F ++ ++EL++ V + +LL++ +H
Sbjct: 7 LQGALSESSASQSILELDGGVKILIDLGWDESFDVEKLQELEKQVPTLSLILLTHATTSH 66
Query: 68 LGALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLF 102
L A + L P++AT PV +G+ DL+
Sbjct: 67 LAAFAHCCKNFPLFTRIPVYATRPVIDLGRTLTQDLY 103
>gi|380480161|emb|CCF42595.1| RNA-metabolising metallo-beta-lactamase [Colletotrichum
higginsianum]
Length = 979
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 10 LSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAH 67
L G + ES +L++D KIL+D GWDE F ++ ++EL++ V + +LL++ +H
Sbjct: 7 LQGALSESAASQSILELDGGVKILIDLGWDESFDVEKLQELEKQVPTLSLILLTHATASH 66
Query: 68 LGALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLF 102
L A + L P++AT PV +G+ DL+
Sbjct: 67 LAAFAHCCKNFPLFTRIPVYATRPVIDLGRTLTQDLY 103
>gi|392580514|gb|EIW73641.1| hypothetical protein TREMEDRAFT_67471 [Tremella mesenterica DSM
1558]
Length = 944
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 18 PPCYLLQVDEFKILLDCGWDEMF------SMDFVKELKRHVHHIDAVLLSYPDVAHLGAL 71
P CYLL+VD+ +ILLD G + S ++ +++ + VLLS+ +L
Sbjct: 19 PLCYLLEVDDARILLDMGQSDYTAASSHSSYEYENKVRELAPTLSLVLLSHSQTRYLSLY 78
Query: 72 PYMVGKCGLSCPIFATIPVYKMGQM 96
P+ + GL CP++AT P +MG++
Sbjct: 79 PFARARWGLQCPVYATQPTVEMGRV 103
>gi|115396064|ref|XP_001213671.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193240|gb|EAU34940.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1005
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
KIL+D GWD+ F ++EL++HV + +LL++ AH+GA + L P++A
Sbjct: 29 KILVDVGWDDTFDPLVLQELEKHVPTLSLILLTHATPAHIGAFVHCCKTFPLFTQIPVYA 88
Query: 87 TIPVYKMGQMFMYDLF 102
T PV +G+ + DL+
Sbjct: 89 TSPVIALGRTLLQDLY 104
>gi|340058172|emb|CCC52525.1| cleavage and polyadenylation specificity factor,putative,
(fragment), partial [Trypanosoma vivax Y486]
Length = 411
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 5 IKMTSLSG--TMDE----SPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAV 58
I++T++ G T D +P YL+++D +IL+DCGW + F + + L H+ + AV
Sbjct: 9 IRLTNIYGAPTGDTYHAGTPMAYLIEIDGVRILMDCGWTDEFRVSHLDALMPHIKDVHAV 68
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMG 94
L S P++ GALP+++ + A KMG
Sbjct: 69 LFSTPEMCSCGALPFVMDHVPPGTHVAAAGATTKMG 104
>gi|169767492|ref|XP_001818217.1| cleavage and polyadenylylation specificity factor [Aspergillus
oryzae RIB40]
gi|83766072|dbj|BAE56215.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1014
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 22 LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL 80
+L++D KIL+D GWD+ F ++EL++HV + +LL++ AH+GA + L
Sbjct: 21 ILELDGGIKILVDVGWDDTFDPLDLQELEKHVPTLSLILLTHATPAHIGAFAHCCKTFPL 80
Query: 81 --SCPIFATIPVYKMGQMFMYDLF 102
P++AT PV +G+ + DL+
Sbjct: 81 FTQIPVYATSPVIALGRTLLQDLY 104
>gi|391871950|gb|EIT81099.1| mRNA cleavage and polyadenylation factor II complex, subunit CFT2
[Aspergillus oryzae 3.042]
Length = 1010
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 22 LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL 80
+L++D KIL+D GWD+ F ++EL++HV + +LL++ AH+GA + L
Sbjct: 21 ILELDGGIKILVDVGWDDTFDPLDLQELEKHVPTLSLILLTHATPAHIGAFAHCCKTFPL 80
Query: 81 --SCPIFATIPVYKMGQMFMYDLF 102
P++AT PV +G+ + DL+
Sbjct: 81 FTQIPVYATSPVIALGRTLLQDLY 104
>gi|358368318|dbj|GAA84935.1| cleavage and polyadenylylation specificity factor [Aspergillus
kawachii IFO 4308]
Length = 1015
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 22 LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL 80
+L++D KIL+D GWD+ F ++EL++HV + +LL++ AH+GA + L
Sbjct: 21 ILELDGGIKILVDVGWDDTFDPLDLQELEKHVPTLSLILLTHATPAHIGAFAHCCKTFPL 80
Query: 81 --SCPIFATIPVYKMGQMFMYDLF 102
P++AT PV +G+ + DL+
Sbjct: 81 FTQIPVYATSPVIALGRTLLQDLY 104
>gi|350633583|gb|EHA21948.1| hypothetical protein ASPNIDRAFT_41125 [Aspergillus niger ATCC 1015]
Length = 1015
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 22 LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL 80
+L++D KIL+D GWD+ F ++EL++HV + +LL++ AH+GA + L
Sbjct: 21 ILELDGGIKILVDVGWDDTFDPLDLQELEKHVPTLSLILLTHATPAHIGAFAHCCKTFPL 80
Query: 81 --SCPIFATIPVYKMGQMFMYDLF 102
P++AT PV +G+ + DL+
Sbjct: 81 FTQIPVYATSPVIALGRTLLQDLY 104
>gi|317036117|ref|XP_001397647.2| cleavage and polyadenylylation specificity factor [Aspergillus
niger CBS 513.88]
Length = 1015
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 22 LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL 80
+L++D KIL+D GWD+ F ++EL++HV + +LL++ AH+GA + L
Sbjct: 21 ILELDGGIKILVDVGWDDTFDPLDLQELEKHVPTLSLILLTHATPAHIGAFAHCCKTFPL 80
Query: 81 --SCPIFATIPVYKMGQMFMYDLF 102
P++AT PV +G+ + DL+
Sbjct: 81 FTQIPVYATSPVIALGRTLLQDLY 104
>gi|302899216|ref|XP_003048005.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256728937|gb|EEU42292.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 958
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 10 LSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAH 67
L G + ESP LL++D K+L+D GWDE F +KE+++ V + +L+++ +H
Sbjct: 7 LQGALSESPASQSLLELDGGVKVLVDLGWDESFDAGKLKEIEKQVTTLSLILVTHATASH 66
Query: 68 LGALPYMVGKCG--LSCPIFATIPVYKMGQMFMYDLF 102
L A + P++AT PV +G+ + DL+
Sbjct: 67 LAAYAHCCKNIPQFTRIPVYATRPVIDLGRTLIQDLY 103
>gi|134083194|emb|CAK42833.1| unnamed protein product [Aspergillus niger]
Length = 865
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 22 LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL 80
+L++D KIL+D GWD+ F ++EL++HV + +LL++ AH+GA + L
Sbjct: 21 ILELDGGIKILVDVGWDDTFDPLDLQELEKHVPTLSLILLTHATPAHIGAFAHCCKTFPL 80
Query: 81 --SCPIFATIPVYKMGQMFMYDLF 102
P++AT PV +G+ + DL+
Sbjct: 81 FTQIPVYATSPVIALGRTLLQDLY 104
>gi|119195099|ref|XP_001248153.1| hypothetical protein CIMG_01924 [Coccidioides immitis RS]
Length = 1015
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 9/74 (12%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATI 88
KIL+D GWDE F +KEL++H+ + +LL++ +H+GA Y ++AT
Sbjct: 29 KILIDVGWDETFDPSALKELEKHIPTLSLILLTHATPSHIGAFVYC---------LYATY 79
Query: 89 PVYKMGQMFMYDLF 102
PV G+ + DL+
Sbjct: 80 PVISFGRSLLQDLY 93
>gi|425768274|gb|EKV06801.1| Cleavage and polyadenylylation specificity factor, putative
[Penicillium digitatum Pd1]
gi|425770355|gb|EKV08828.1| Cleavage and polyadenylylation specificity factor, putative
[Penicillium digitatum PHI26]
Length = 1001
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 22 LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL 80
+L++D KIL+D GWD+ F+ + EL++H+ + +LL++ AH+GAL + L
Sbjct: 21 ILELDGGIKILVDVGWDDTFNTLDLAELEKHIPTLSLILLTHATPAHIGALVHCCRTFPL 80
Query: 81 --SCPIFATIPVYKMGQMFMYDLF 102
PI+AT PV G+ + DL+
Sbjct: 81 FTQIPIYATNPVIAFGRTLLQDLY 104
>gi|312381513|gb|EFR27247.1| hypothetical protein AND_06171 [Anopheles darlingi]
Length = 624
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRH--VHHIDA 57
IK+T L D C LL + I+LDCG DE DF + +HID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSFIIPEGPITNHIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|157107341|ref|XP_001649735.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108879612|gb|EAT43837.1| AAEL004757-PA [Aedes aegypti]
Length = 613
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRH--VHHIDA 57
IK+T L D C LL + I+LDCG DE DF + +HID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSFIVPEGPITNHIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYMTEMIGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|406865774|gb|EKD18815.1| RNA-metabolising metallo-beta-lactamase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1331
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
K+L+D GWDE F + +KEL++ V + +LL++ V+H+ A + L P++A
Sbjct: 28 KVLIDVGWDETFDVAKLKELEKQVPTLSIILLTHATVSHIAAFAHCCKHFPLFSRIPVYA 87
Query: 87 TIPVYKMGQMFMYDLF 102
T+PV +G+ + +++
Sbjct: 88 TLPVISLGRTLVQNIY 103
>gi|158298905|ref|XP_319042.4| AGAP009923-PA [Anopheles gambiae str. PEST]
gi|157014111|gb|EAA13845.4| AGAP009923-PA [Anopheles gambiae str. PEST]
Length = 608
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRH--VHHIDA 57
IK+T L D C LL + I+LDCG DE DF + +HID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMAGKNIMLDCGMHMGYNDERRFPDFSFIIPEGPITNHIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|170052069|ref|XP_001862054.1| cleavage and polyadenylation specificity factor subunit 3 [Culex
quinquefasciatus]
gi|167873079|gb|EDS36462.1| cleavage and polyadenylation specificity factor subunit 3 [Culex
quinquefasciatus]
Length = 615
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS-------MDFVKELKRHVHHIDA 57
IK+T L D C LL + I+LDCG ++ F+ +HID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSFIVPEGPITNHIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|159127661|gb|EDP52776.1| cleavage and polyadenylylation specificity factor, putative
[Aspergillus fumigatus A1163]
Length = 1013
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 22 LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL 80
+L++D KIL+D GWD+ F + EL++H+ + +LL++ AHLGA + L
Sbjct: 20 ILELDGGIKILVDVGWDDTFDTLDLLELEKHIPTLSLILLTHATPAHLGAFVHCCRTFPL 79
Query: 81 --SCPIFATIPVYKMGQMFMYDLF 102
P++AT PV +G+ + DL+
Sbjct: 80 FTQIPVYATSPVIALGRTLLQDLY 103
>gi|70999860|ref|XP_754647.1| cleavage and polyadenylylation specificity factor [Aspergillus
fumigatus Af293]
gi|66852284|gb|EAL92609.1| cleavage and polyadenylylation specificity factor, putative
[Aspergillus fumigatus Af293]
Length = 1013
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 22 LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL 80
+L++D KIL+D GWD+ F + EL++H+ + +LL++ AHLGA + L
Sbjct: 20 ILELDGGIKILVDVGWDDTFDTLDLLELEKHIPTLSLILLTHATPAHLGAFVHCCRTFPL 79
Query: 81 --SCPIFATIPVYKMGQMFMYDLF 102
P++AT PV +G+ + DL+
Sbjct: 80 FTQIPVYATSPVIALGRTLLQDLY 103
>gi|347838796|emb|CCD53368.1| similar to cleavage and polyadenylation specificity factor subunit
2 [Botryotinia fuckeliana]
Length = 934
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
K+L+D GWDE F ++ ++EL++ + + +LL++ V H+ A + L P++A
Sbjct: 28 KVLIDVGWDETFDVEKLRELEKQIPTLSLILLTHATVPHIAAYAHCCKHFPLFTRIPVYA 87
Query: 87 TIPVYKMGQMFMYDLF 102
T PV +G+ + DL+
Sbjct: 88 THPVIALGRTLLQDLY 103
>gi|156042700|ref|XP_001587907.1| hypothetical protein SS1G_11148 [Sclerotinia sclerotiorum 1980]
gi|154695534|gb|EDN95272.1| hypothetical protein SS1G_11148 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 936
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
K+L+D GWDE F ++ ++EL++ + + +LL++ V H+ A + L P++A
Sbjct: 28 KVLIDVGWDETFDVEKLRELEKQIPTLSLILLTHATVPHIAAYAHCCKHFPLFTRIPVYA 87
Query: 87 TIPVYKMGQMFMYDLF 102
T PV +G+ + DL+
Sbjct: 88 THPVIALGRTLLQDLY 103
>gi|154292337|ref|XP_001546744.1| hypothetical protein BC1G_14624 [Botryotinia fuckeliana B05.10]
Length = 901
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
K+L+D GWDE F ++ ++EL++ + + +LL++ V H+ A + L P++A
Sbjct: 28 KVLIDVGWDETFDVEKLRELEKQIPTLSLILLTHATVPHIAAYAHCCKHFPLFTRIPVYA 87
Query: 87 TIPVYKMGQMFMYDLF 102
T PV +G+ + DL+
Sbjct: 88 THPVIALGRTLLQDLY 103
>gi|346976151|gb|EGY19603.1| cleavage and polyadenylation specificity factor subunit 2
[Verticillium dahliae VdLs.17]
Length = 972
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 9 SLSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVA 66
+L G ES +L++D K+L+D GWDE F ++ +KEL++ V + +LL++ +
Sbjct: 7 ALQGARSESAASQSILELDGGVKVLIDIGWDESFDVEKLKELEKQVPTLSLILLTHATTS 66
Query: 67 HLGALPYMVGKCG--LSCPIFATIPVYKMGQMFMYDLF 102
HL A + P++AT PV +G+ DL+
Sbjct: 67 HLAAFAHCCKNFPQFTRIPVYATRPVIDLGRTLTQDLY 104
>gi|46138561|ref|XP_390971.1| hypothetical protein FG10795.1 [Gibberella zeae PH-1]
Length = 964
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 10 LSGTM-DESPPCYLLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAH 67
L G + D S LL++D K+L+D GWDE F ++ +KE+++ V + +L+++ +H
Sbjct: 7 LQGALSDSSASQSLLELDGGVKVLVDLGWDETFDVEKLKEIEKQVTTLSLILVTHATASH 66
Query: 68 LGALPYMVGKCG--LSCPIFATIPVYKMGQMFMYDLF 102
L A + P++AT PV +G+ + DL+
Sbjct: 67 LAAYAHCCKNIPQFTRIPVYATRPVIDLGRTLIQDLY 103
>gi|91086147|ref|XP_969343.1| PREDICTED: similar to CG1972 CG1972-PA [Tribolium castaneum]
gi|270009886|gb|EFA06334.1| hypothetical protein TcasGA2_TC009205 [Tribolium castaneum]
Length = 595
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
IK+T L D C LL + I+LDCG DE DF + + +ID
Sbjct: 4 IKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYISQEGPLTSYIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G S PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYSGPIYMTHPTKAIAPILLEDMRKV 110
>gi|408391611|gb|EKJ70983.1| hypothetical protein FPSE_08842 [Fusarium pseudograminearum CS3096]
Length = 963
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 10 LSGTM-DESPPCYLLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAH 67
L G + D S LL++D K+L+D GWDE F ++ +KE+++ V + +L+++ +H
Sbjct: 7 LQGALSDSSASQSLLELDGGVKVLVDLGWDESFDVEKLKEIEKQVTTLSLILVTHATASH 66
Query: 68 LGALPYMVGKCG--LSCPIFATIPVYKMGQMFMYDLF 102
L A + P++AT PV +G+ + DL+
Sbjct: 67 LAAYAHCCKNIPQFTRIPVYATRPVIDLGRTLIQDLY 103
>gi|350288464|gb|EGZ69700.1| hypothetical protein NEUTE2DRAFT_152270 [Neurospora tetrasperma
FGSC 2509]
Length = 1070
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 10 LSGTM-DESPPCYLLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAH 67
L G + D S LL++D KIL+D GWDE F ++ +KEL + + +LL++ V H
Sbjct: 75 LQGALSDSSASQSLLELDGGVKILIDVGWDETFDVEKLKELGKQAPTLSLILLTHATVPH 134
Query: 68 LGALPYMVGKCG--LSCPIFATIPVYKMGQMFMYDLF 102
L A + P++AT PV +G+ DL+
Sbjct: 135 LAAYAHCCKHFPPFQRIPVYATRPVIDLGRTLTQDLY 171
>gi|336466927|gb|EGO55091.1| hypothetical protein NEUTE1DRAFT_130968 [Neurospora tetrasperma
FGSC 2508]
Length = 1051
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 10 LSGTM-DESPPCYLLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAH 67
L G + D S LL++D KIL+D GWDE F ++ +KEL + + +LL++ V H
Sbjct: 56 LQGALSDSSASQSLLELDGGVKILIDVGWDETFDVEKLKELGKQAPTLSLILLTHATVPH 115
Query: 68 LGALPYMVGKCG--LSCPIFATIPVYKMGQMFMYDLF 102
L A + P++AT PV +G+ DL+
Sbjct: 116 LAAYAHCCKHFPPFQRIPVYATRPVIDLGRTLTQDLY 152
>gi|164424681|ref|XP_958078.2| hypothetical protein NCU06869 [Neurospora crassa OR74A]
gi|157070616|gb|EAA28842.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 986
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 10 LSGTM-DESPPCYLLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAH 67
L G + D S LL++D KIL+D GWDE F ++ +KEL + + +LL++ V H
Sbjct: 7 LQGALSDSSASQSLLELDGGVKILIDVGWDETFDVEKLKELGKQAPTLSLILLTHATVPH 66
Query: 68 LGALPYMVGKCG--LSCPIFATIPVYKMGQMFMYDLF 102
L A + P++AT PV +G+ DL+
Sbjct: 67 LAAYAHCCKHFPPFQRIPVYATRPVIDLGRTLTQDLY 103
>gi|21358523|ref|NP_651721.1| integrator 11 [Drosophila melanogaster]
gi|7301822|gb|AAF56931.1| integrator 11 [Drosophila melanogaster]
gi|16768852|gb|AAL28645.1| LD08814p [Drosophila melanogaster]
gi|220943570|gb|ACL84328.1| CG1972-PA [synthetic construct]
gi|220953494|gb|ACL89290.1| CG1972-PA [synthetic construct]
Length = 597
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRH--VHHIDA 57
IK+T L D C LL + I+LDCG DE DF + HID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|353237084|emb|CCA69065.1| hypothetical protein PIIN_02923 [Piriformospora indica DSM 11827]
Length = 887
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 19/111 (17%)
Query: 4 IIKMTSLSGTMDES---PPCYLLQVDEFKILLDCG---W------------DEMFSMDFV 45
++ T L+G + P YLL +D KILLDCG W ++F +
Sbjct: 1 MVSFTPLAGGAHSASTIPLAYLLDIDGAKILLDCGSPDWHLDDDLKVGEEQKQIFE-SYC 59
Query: 46 KELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
+L+R ID VLLS+ D+AH G Y + GL+ +AT+PV ++
Sbjct: 60 AQLQRISPDIDLVLLSHGDLAHAGLYAYANARWGLTATAYATLPVQATARL 110
>gi|194906134|ref|XP_001981318.1| GG11690 [Drosophila erecta]
gi|190655956|gb|EDV53188.1| GG11690 [Drosophila erecta]
Length = 597
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRH--VHHIDA 57
IK+T L D C LL + I+LDCG DE DF + HID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|195341281|ref|XP_002037239.1| GM12816 [Drosophila sechellia]
gi|195574829|ref|XP_002105386.1| GD21460 [Drosophila simulans]
gi|194131355|gb|EDW53398.1| GM12816 [Drosophila sechellia]
gi|194201313|gb|EDX14889.1| GD21460 [Drosophila simulans]
Length = 597
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRH--VHHIDA 57
IK+T L D C LL + I+LDCG DE DF + HID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|195503187|ref|XP_002098546.1| GE23879 [Drosophila yakuba]
gi|194184647|gb|EDW98258.1| GE23879 [Drosophila yakuba]
Length = 597
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRH--VHHIDA 57
IK+T L D C LL + I+LDCG DE DF + HID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|449299688|gb|EMC95701.1| hypothetical protein BAUCODRAFT_71003 [Baudoinia compniacensis UAMH
10762]
Length = 938
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 4 IIKMTSLSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
+ T L G ES LL++D K+L+D GWD F + ++R + VLL+
Sbjct: 1 MFNFTPLLGAQAESAASQSLLELDGGIKVLVDVGWDAAFDAQRLDAIERQTSTLSLVLLT 60
Query: 62 YPDVAHLGALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLF 102
+ HLGA + L P++AT PV +G+ + DL+
Sbjct: 61 HATTEHLGAYAHCCKHIPLFSKVPVYATTPVINLGRTLLLDLY 103
>gi|119491987|ref|XP_001263488.1| cleavage and polyadenylylation specificity factor, putative
[Neosartorya fischeri NRRL 181]
gi|119411648|gb|EAW21591.1| cleavage and polyadenylylation specificity factor, putative
[Neosartorya fischeri NRRL 181]
Length = 1013
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 22 LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL 80
+L++D KIL+D GWD+ F + EL++H+ + +LL++ AH+GA + C
Sbjct: 20 ILELDGGIKILVDVGWDDTFDTLDLLELEKHIPTLSLILLTHATPAHIGAFVH----CCK 75
Query: 81 SCPIFATIPVY------KMGQMFMYDLF 102
+ P+F IPVY +G+ + DL+
Sbjct: 76 TFPLFTQIPVYATSPIIALGRTLLQDLY 103
>gi|195062087|ref|XP_001996130.1| GH14325 [Drosophila grimshawi]
gi|193891922|gb|EDV90788.1| GH14325 [Drosophila grimshawi]
Length = 597
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRH--VHHIDA 57
IK+T L D C LL + I+LDCG DE DF + HID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYAGPIYMTHPTKAIAPILLEDMRKV 110
>gi|195394529|ref|XP_002055895.1| GJ10637 [Drosophila virilis]
gi|194142604|gb|EDW59007.1| GJ10637 [Drosophila virilis]
Length = 597
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRH--VHHIDA 57
IK+T L D C LL + I+LDCG DE DF + HID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|195445135|ref|XP_002070189.1| GK11920 [Drosophila willistoni]
gi|194166274|gb|EDW81175.1| GK11920 [Drosophila willistoni]
Length = 597
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRH--VHHIDA 57
IK+T L D C LL + I+LDCG DE DF + HID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|195143691|ref|XP_002012831.1| GL23717 [Drosophila persimilis]
gi|194101774|gb|EDW23817.1| GL23717 [Drosophila persimilis]
Length = 597
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRH--VHHIDA 57
IK+T L D C LL + I+LDCG DE DF + HID
Sbjct: 4 IKITPLGAGQDVGRSCLLLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYNGPIYMTHPTKAIAPILLEDMRKV 110
>gi|195112455|ref|XP_002000788.1| GI10422 [Drosophila mojavensis]
gi|193917382|gb|EDW16249.1| GI10422 [Drosophila mojavensis]
Length = 597
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRH--VHHIDA 57
IK+T L D C LL + I+LDCG DE DF + HID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|121705410|ref|XP_001270968.1| cleavage and polyadenylylation specificity factor, putative
[Aspergillus clavatus NRRL 1]
gi|119399114|gb|EAW09542.1| cleavage and polyadenylylation specificity factor, putative
[Aspergillus clavatus NRRL 1]
Length = 1014
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 22 LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL 80
+L++D KIL+D GWD+ F + EL++H+ + +LL++ +H+GA + L
Sbjct: 21 ILELDGGIKILVDVGWDDTFDTLDLLELEKHIPTLSLILLTHATPSHIGAFVHCCKTFPL 80
Query: 81 --SCPIFATIPVYKMGQMFMYDLF 102
P++AT PV +G+ + DL+
Sbjct: 81 FTQIPVYATSPVISLGRTLLQDLY 104
>gi|125773833|ref|XP_001358175.1| GA15164 [Drosophila pseudoobscura pseudoobscura]
gi|54637910|gb|EAL27312.1| GA15164 [Drosophila pseudoobscura pseudoobscura]
Length = 597
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRH--VHHIDA 57
IK+T L D C LL + I+LDCG DE DF + HID
Sbjct: 4 IKITPLGAGQDVGRSCLLLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYNGPIYMTHPTKAIAPILLEDMRKV 110
>gi|194765324|ref|XP_001964777.1| GF23370 [Drosophila ananassae]
gi|190615049|gb|EDV30573.1| GF23370 [Drosophila ananassae]
Length = 597
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRH--VHHIDA 57
IK+T L D C LL + I+LDCG DE DF + HID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPDGPITSHIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|330842661|ref|XP_003293292.1| hypothetical protein DICPUDRAFT_158104 [Dictyostelium purpureum]
gi|325076396|gb|EGC30185.1| hypothetical protein DICPUDRAFT_158104 [Dictyostelium purpureum]
Length = 789
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDAVL 59
I+++T + + C LL+ KI+ DCG + + S+ F ++ + ID +L
Sbjct: 30 ILEITPIGSGNEVGRSCVLLKYKGKKIMFDCGVHPAYSGLVSLPFFDSVESDIPDIDLLL 89
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+S+ + H A+PY VGK S +F T P + M + D +V
Sbjct: 90 VSHFHLDHAAAVPYFVGKTKFSGRVFMTHPTKAIYGMLLADFVKV 134
>gi|336261956|ref|XP_003345764.1| hypothetical protein SMAC_05921 [Sordaria macrospora k-hell]
gi|380090100|emb|CCC12183.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1003
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 10 LSGTM-DESPPCYLLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAH 67
L G + D S LL++D KIL+D GWDE F ++ ++EL R + +LL++ V H
Sbjct: 7 LQGALSDSSASQSLLELDGGVKILIDVGWDETFDVEKLRELGRIAPTLSLILLTHATVPH 66
Query: 68 LGALPYMVGKCG--LSCPIFATIPVYKMGQMFMYDLF 102
L A + P++AT PV +G+ DL+
Sbjct: 67 LAAYAHCCKHFPPFQRIPVYATRPVIDLGRTLTQDLY 103
>gi|452943963|ref|YP_007500128.1| RNA-metabolising metallo-beta-lactamase [Hydrogenobaculum sp. HO]
gi|452882381|gb|AGG15085.1| RNA-metabolising metallo-beta-lactamase [Hydrogenobaculum sp. HO]
Length = 451
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+K+ S + ++L +D+ KIL+DCG + + +EL +DAVLL++
Sbjct: 1 MKVISYGAAKTVTGSAHMLILDDKKILIDCGLFQGVDEEKSEELGFDPKEVDAVLLTHAH 60
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTF 109
+ H G LP +V K G I+ T P Y++ ++ + D +V + +
Sbjct: 61 IDHCGRLPMLV-KNGFKGKIYCTNPTYELSRLMLLDTAKVMLENY 104
>gi|294495430|ref|YP_003541923.1| KH-domain/beta-lactamase-domain protein [Methanohalophilus mahii
DSM 5219]
gi|292666429|gb|ADE36278.1| KH-domain/beta-lactamase-domain protein [Methanohalophilus mahii
DSM 5219]
Length = 637
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 7/105 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHVHHIDAVL 59
+++TSL G + C+LL E KI++DCG D+M ++ E++ ++ IDAV+
Sbjct: 181 VRLTSLGGCREVGRSCFLLSTPESKIMIDCGVNVGSDDDMTPYLYIPEVQP-LNQIDAVV 239
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+++ + H G +P ++ K G PI+ T P + + D V
Sbjct: 240 ITHAHLDHQGLVP-LLYKYGYDGPIYCTHPTRDLMVLLELDFIDV 283
>gi|388853919|emb|CCF52417.1| uncharacterized protein [Ustilago hordei]
Length = 1033
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 42/125 (33%)
Query: 21 YLLQVDEFKILLDCGWDE------------------------------------MFSMDF 44
YLLQ+D+ ++L+DCG E F +D
Sbjct: 39 YLLQMDDVRVLIDCGSPEDFVFSNSVSASTSDNHDGKAESSSMAQQREASDPTASFDLDQ 98
Query: 45 VKE------LKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
+K L++ ID VLLS+ + HLG Y K GL C ++AT+PV MG++ +
Sbjct: 99 LKAAPLDTLLRQLAPTIDLVLLSHSSLDHLGLFAYAHAKLGLRCQVYATMPVQSMGKLTV 158
Query: 99 YDLFQ 103
+ Q
Sbjct: 159 LEAIQ 163
>gi|67525249|ref|XP_660686.1| hypothetical protein AN3082.2 [Aspergillus nidulans FGSC A4]
gi|40744477|gb|EAA63653.1| hypothetical protein AN3082.2 [Aspergillus nidulans FGSC A4]
gi|259485970|tpe|CBF83440.1| TPA: cleavage and polyadenylylation specificity factor, putative
(AFU_orthologue; AFUA_3G09720) [Aspergillus nidulans
FGSC A4]
Length = 1005
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 29 KILLDCGWDEMFS-MDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIF 85
KIL+D GWD+ F +D V EL++HV + +LL++ +H+GA + L P++
Sbjct: 29 KILVDVGWDDTFDPLDLV-ELEKHVSTLSLILLTHATPSHIGAYVHCCKTFPLFTQIPVY 87
Query: 86 ATIPVYKMGQMFMYDLFQ 103
AT PV +G+ + D+++
Sbjct: 88 ATSPVIALGRTLLQDVYE 105
>gi|226288011|gb|EEH43524.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 999
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
KIL+D GWD F + EL+R + + +LL++ +H+GA + L P++A
Sbjct: 29 KILVDVGWDHSFDTSALAELERQIPTLSLILLTHATPSHIGAFAHCCKTFPLFTQIPVYA 88
Query: 87 TIPVYKMGQMFMYDLF 102
T PV G+ + DL+
Sbjct: 89 TSPVIAFGRSLLQDLY 104
>gi|295659367|ref|XP_002790242.1| cleavage and polyadenylation specific factor 2 [Paracoccidioides
sp. 'lutzii' Pb01]
gi|226281947|gb|EEH37513.1| cleavage and polyadenylation specific factor 2 [Paracoccidioides
sp. 'lutzii' Pb01]
Length = 999
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL--SCPIFA 86
KIL+D GWD F + EL+R + + +LL++ +H+GA + L P++A
Sbjct: 29 KILVDVGWDHSFDTSALAELERQIPTLSLILLTHATPSHIGAFAHCCKTFPLFTQIPVYA 88
Query: 87 TIPVYKMGQMFMYDLF 102
T PV G+ + DL+
Sbjct: 89 TSPVIAFGRSLLQDLY 104
>gi|328873132|gb|EGG21499.1| integrator complex subunit 11 [Dictyostelium fasciculatum]
Length = 645
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
IK+ L D C ++ + I+ DCG DE DF + + K+ +D
Sbjct: 3 IKVVPLGAGQDVGRSCVIVSIGNKNIMFDCGMHMGYHDERRFPDFSFISKTKQFTKTLDC 62
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
+++++ + H GALPY CG PI+ T+P + + + D ++ D
Sbjct: 63 IIITHFHLDHCGALPYFTEMCGYDGPIYMTLPTKAIVPILLEDYRKISVD 112
>gi|224009389|ref|XP_002293653.1| cleavage and polyadenylation specificity factor [Thalassiosira
pseudonana CCMP1335]
gi|220971053|gb|EED89389.1| cleavage and polyadenylation specificity factor [Thalassiosira
pseudonana CCMP1335]
Length = 347
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 18 PPCYLLQVDEFKILLDCGWDEMF--SMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMV 75
P C L++ K+LL+ GWDE + + + +DA+L++ ++ LG LP
Sbjct: 1 PSCTLVEYAGMKLLLNAGWDETLPAATSVSDIIPNELPDVDAILITDSTLSSLGGLPMYF 60
Query: 76 GKC---GLSCPIFATIPVYKMGQMFMYD 100
G + P AT P KMGQM +YD
Sbjct: 61 GGNQDKKRNPPFLATYPTVKMGQMTLYD 88
>gi|348687219|gb|EGZ27033.1| hypothetical protein PHYSODRAFT_257520 [Phytophthora sojae]
Length = 138
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 20/89 (22%)
Query: 19 PC--YLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVG 76
PC YLL+VDE ILL GW + + ++ + L+R V ID VLL
Sbjct: 23 PCCAYLLEVDEVCILLYWGWTDEYDVELLMPLQRVVDRIDLVLL---------------- 66
Query: 77 KCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
GL+ P++ P+++MGQ+ +Y FQ +
Sbjct: 67 --GLNAPVYGMRPMHRMGQIPLYSAFQAK 93
>gi|346327110|gb|EGX96706.1| cleavage and polyadenylylation specificity factor, putative
[Cordyceps militaris CM01]
Length = 1024
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 1 MTSIIKMTSLSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAV 58
+ ++ L G ES LL++D K+L+D GWDE F + ++EL++ V + +
Sbjct: 32 IATMFTFCPLQGAQSESLASQSLLELDGGVKVLVDLGWDESFDVAKLEELEKQVPTLSLI 91
Query: 59 LLSYPDVAHLGALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLF 102
LL++ +H+ A + L P++AT PV +G+ DL+
Sbjct: 92 LLTHATASHIAAYVHCCKNIPLFTRIPVYATRPVIDLGRTLTQDLY 137
>gi|223647718|gb|ACN10617.1| Integrator complex subunit 11 [Salmo salar]
Length = 343
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
IK+T L D C L+ + I+LDCG F+ D ++ + R +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQQGRLTEFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPYM G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVD 113
>gi|91772428|ref|YP_565120.1| beta-lactamase-like protein [Methanococcoides burtonii DSM 6242]
gi|91711443|gb|ABE51370.1| RNA-metabolizing metallo-beta-lactamase protein [Methanococcoides
burtonii DSM 6242]
Length = 636
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHVHHIDAVL 59
+++TSL G + C+LL E KI++DCG D M ++ E++ ++ IDAV+
Sbjct: 181 VRVTSLGGCKEVGRSCFLLSTPESKIMIDCGVNVGSDDNMTPYLYLPEVQP-LNQIDAVV 239
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+++ + H G +P ++ K G PI+ T P + + D V
Sbjct: 240 ITHAHLDHQGLVP-LLYKYGYEGPIYCTSPTRDIMTLLQLDFIDV 283
>gi|58266278|ref|XP_570295.1| cleavage and polyadenylation specificity factor subunit
[Cryptococcus neoformans var. neoformans JEC21]
gi|134111080|ref|XP_775682.1| hypothetical protein CNBD4110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258346|gb|EAL21035.1| hypothetical protein CNBD4110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226528|gb|AAW42988.1| cleavage and polyadenylation specificity factor subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 899
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 10/103 (9%)
Query: 4 IIKMTSLSGTMDESPP----CYLLQVDEFKILLDCGW------DEMFSMDFVKELKRHVH 53
+I +T LS + E+ P CYLL++D+ +ILLD G + S D+ + ++
Sbjct: 1 MITLTPLSASAAETSPSEPICYLLELDDARILLDMGQRDYRASSQQCSWDYEEAVRDLAP 60
Query: 54 HIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
+ VLLS+ +L PY + GL+CP++AT P +MG++
Sbjct: 61 TLSLVLLSHSSSNYLSLYPYARARWGLTCPVYATQPTVEMGRV 103
>gi|66472504|ref|NP_001018457.1| integrator complex subunit 11 [Danio rerio]
gi|82192739|sp|Q503E1.1|INT11_DANRE RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|63102425|gb|AAH95364.1| Zgc:110671 [Danio rerio]
Length = 598
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
IK+T L D C L+ + I+LDCG F+ D ++ + R +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPYM G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVD 113
>gi|327401049|ref|YP_004341888.1| KH-domain/beta-lactamase-domain-containing protein [Archaeoglobus
veneficus SNP6]
gi|327316557|gb|AEA47173.1| KH-domain/beta-lactamase-domain protein [Archaeoglobus veneficus
SNP6]
Length = 634
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD----EMFSMDFVKELKRHVHHIDAVLL 60
+++T L G+ + CYLLQ E KIL+DCG + + +V E++ + IDAV++
Sbjct: 180 VRVTFLGGSREVGRSCYLLQTPESKILIDCGVNVSNIQHSPYLYVPEVQP-LDSIDAVVI 238
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++ + H G +P + K G PI+ T P + + D +V
Sbjct: 239 THAHLDHCGLVPILY-KYGYKGPIYMTPPTRDLMVLLQLDFIEV 281
>gi|429963197|gb|ELA42741.1| hypothetical protein VICG_00056 [Vittaforma corneae ATCC 50505]
Length = 547
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79
C+LLQ+D K+++DCG + F +K + + D +LL+ D+ H+GA+
Sbjct: 22 CHLLQIDNIKLIVDCGIGKDFDYSIYDTVKETIQNADCILLTSFDLQHMGAIGLFA---- 77
Query: 80 LSCPIFATIPVYKMGQMFMYDL 101
IF TIP +G++ + +L
Sbjct: 78 -DSQIFCTIPTAVLGKIVLDEL 98
>gi|405120276|gb|AFR95047.1| cleavage and polyadenylation specificity factor subunit
[Cryptococcus neoformans var. grubii H99]
Length = 899
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 10/103 (9%)
Query: 4 IIKMTSLSGTMDESPP----CYLLQVDEFKILLDCGWD------EMFSMDFVKELKRHVH 53
+I +T LS + E+ P CYLL++D+ +ILLD G + S D+ + ++
Sbjct: 1 MITLTPLSASAAETSPSEPICYLLELDDARILLDMGQRDYRASAQQSSWDYEEAVRDLAP 60
Query: 54 HIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
+ VLLS+ +L PY + GL+CP++AT P +MG++
Sbjct: 61 TLSLVLLSHSSSNYLSLYPYARARWGLTCPVYATQPTVEMGRV 103
>gi|195953143|ref|YP_002121433.1| beta-lactamase domain-containing protein [Hydrogenobaculum sp.
Y04AAS1]
gi|195932755|gb|ACG57455.1| beta-lactamase domain protein [Hydrogenobaculum sp. Y04AAS1]
Length = 451
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+K+ S + ++L +D+ KIL+DCG + + +EL +DAVLL++
Sbjct: 1 MKVISYGAAKTVTGSAHMLILDDEKILIDCGLFQGVDEEKSEELGFDPKEVDAVLLTHAH 60
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTF 109
+ H G +P ++ K G I+ T P Y++ ++ + D +V + +
Sbjct: 61 IDHCGRIPMLI-KNGFKGKIYCTRPTYELSRLMLLDTAKVMLENY 104
>gi|390367057|ref|XP_784887.2| PREDICTED: integrator complex subunit 11-like, partial
[Strongylocentrotus purpuratus]
Length = 355
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
I++ L D C LL + I+LDCG DE DF + + R H+DA
Sbjct: 4 IRIVPLGAGQDVGRSCILLTIGSKNIMLDCGMHMGFNDERRFPDFSYINKNGRLTDHLDA 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALP+M G PI+ T P + + + D ++
Sbjct: 64 VIISHFHLDHCGALPHMSEIVGYDGPIYMTQPTKAICPILLEDYRKI 110
>gi|443898849|dbj|GAC76183.1| mRNA cleavage and polyadenylation factor II complex, subunit CFT2
[Pseudozyma antarctica T-34]
Length = 1135
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 45/128 (35%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHH-------------------------- 54
YLLQ+D+ ++L+DCG E F EL H
Sbjct: 123 YLLQMDDVRVLIDCGSPEDFFFSGASELDLPSSHATGSSDDQAESSSMAQQRDSDSASLD 182
Query: 55 -------------------IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQ 95
ID VLLS+ + HLG Y K GL C ++AT+PV MG+
Sbjct: 183 LSQLKAAPLDTLLRELAPTIDLVLLSHSSLDHLGLYAYAYAKLGLRCLVYATMPVQSMGK 242
Query: 96 MFMYDLFQ 103
+ + + Q
Sbjct: 243 LTVLEATQ 250
>gi|226492345|ref|NP_001151557.1| LOC100285191 [Zea mays]
gi|195647682|gb|ACG43309.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Zea mays]
Length = 673
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 67 HLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
HLGALPY + GLS P++AT PV+++G + MYD F R+
Sbjct: 3 HLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDHFLSRW 42
>gi|66820693|ref|XP_643926.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
gi|74860395|sp|Q86A79.1|CPSF3_DICDI RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; Short=Cleavage and polyadenylation
specificity factor 3
gi|60472339|gb|EAL70292.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
Length = 774
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDAVL 59
I+++T + + C LL+ K++ DCG + + S+ F ++ + ID +L
Sbjct: 35 ILEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFDSIESDIPDIDLLL 94
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+S+ + H A+PY VGK +F T P + M + D +V
Sbjct: 95 VSHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKV 139
>gi|427779771|gb|JAA55337.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Rhipicephalus pulchellus]
Length = 621
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
I +T L D C LL + ++LDCG DE DF + + H+D
Sbjct: 4 ISVTPLGAGQDVGRSCILLSIGGKNVMLDCGMHMGFNDERRFPDFSYITQEGPLNEHLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPYM G S P++ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYSGPVYMTHPTKAICPILLEDFRKITVD 113
>gi|331212217|ref|XP_003307378.1| hypothetical protein PGTG_00328 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309297781|gb|EFP74372.1| hypothetical protein PGTG_00328 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 950
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 60/96 (62%), Gaps = 5/96 (5%)
Query: 5 IKMTSLSGTMDESPP-CYLLQVDEFKILLDCGWDEMFS---MD-FVKELKRHVHHIDAVL 59
IK+T L G D + YLL++DE +ILLDCG + + +D ++ +L +D VL
Sbjct: 3 IKLTPLIGAHDSTGILSYLLEIDEGRILLDCGCPDRPTPGEIDGYLNKLAELTPSLDLVL 62
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQ 95
LS+P ++ LG +P + + GL CPI+AT+P +MG+
Sbjct: 63 LSHPLLSSLGLVPLLRARLGLRCPIYATLPTKEMGR 98
>gi|430813604|emb|CCJ29043.1| unnamed protein product [Pneumocystis jirovecii]
gi|430813606|emb|CCJ29045.1| unnamed protein product [Pneumocystis jirovecii]
Length = 772
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 14/93 (15%)
Query: 16 ESPPCYLLQVDEFKILLDCGWDEMFS----MDFVKELKRHVHHIDAVLLSYPDVAHLGAL 71
E +L E KILLD G +++ S +DF+ +L +L S+ DV+H+G+
Sbjct: 11 ERSSASVLSFGEIKILLDPGANDLLSEFLELDFIPDL---------ILFSHSDVSHVGSF 61
Query: 72 PYMVGKCGL-SCPIFATIPVYKMGQMFMYDLFQ 103
+ G PI+AT+P++ MG++ M D ++
Sbjct: 62 VHGFKHSGWHDVPIYATLPIFNMGRVTMSDCYK 94
>gi|408404949|ref|YP_006862932.1| beta-lactamase [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408365545|gb|AFU59275.1| beta-lactamase domain protein [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 628
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 7 MTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH------VHHIDAVLL 60
+ +L G + C LL E K+LLDCG + +++ D + + R + IDAV+L
Sbjct: 188 LMTLGGFAEVGRSCMLLTTSESKVLLDCGLN-IYAKDSLAAMPRFDAAGIGMEEIDAVVL 246
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
S+ + H G LP + K G S P++ T P + M D
Sbjct: 247 SHAHMDHTGFLPALF-KYGYSGPVYCTEPTLLLMSMLQRD 285
>gi|424814262|ref|ZP_18239440.1| putative metal-dependent Rnase [Candidatus Nanosalina sp. J07AB43]
gi|339757878|gb|EGQ43135.1| putative metal-dependent Rnase [Candidatus Nanosalina sp. J07AB43]
Length = 544
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD--------EMFSMDFVKELKRHVHHID 56
I++++L C+LLQ +E +LLDCG + E F EL + +D
Sbjct: 173 IRISTLGSCRQVGRSCFLLQTEESNVLLDCGINPSAESGSPENFPYLNAPELD--LQQLD 230
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
AV+LS+ + H G +PY+ K G P++ T P + M D
Sbjct: 231 AVILSHAHMDHCGMIPYLY-KMGYDGPLYCTEPTRDLMIMLALD 273
>gi|322708414|gb|EFY99991.1| cleavage and polyadenylylation specificity factor, putative
[Metarhizium anisopliae ARSEF 23]
Length = 960
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 10 LSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAH 67
L G + ES LL++D K+L+ GWDE F + ++EL++ V + +LL++ +H
Sbjct: 7 LQGALSESTASQSLLELDGGVKVLVGLGWDETFDLGKLEELEKQVPTLSLILLTHATASH 66
Query: 68 LGALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLF 102
L A + L P +AT PV +G+ + DL+
Sbjct: 67 LAAYVHCCKNFPLFTRIPAYATRPVIDLGRSLIQDLY 103
>gi|427785581|gb|JAA58242.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Rhipicephalus pulchellus]
Length = 587
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
I +T L D C LL + ++LDCG DE DF + + H+D
Sbjct: 4 ISVTPLGAGQDVGRSCILLSIGGKNVMLDCGMHMGFNDERRFPDFSYITQEGPLNEHLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPYM G S P++ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYSGPVYMTHPTKAICPILLEDFRKITVD 113
>gi|323140405|ref|ZP_08075334.1| metallo-beta-lactamase domain protein [Phascolarctobacterium
succinatutens YIT 12067]
gi|322415090|gb|EFY05880.1| metallo-beta-lactamase domain protein [Phascolarctobacterium
succinatutens YIT 12067]
Length = 535
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW---DEMFSMDFVKELKRHVHHIDAVLLS 61
+K+T L T + CYLL+V K L+DCG ++ KE H I+AV+L+
Sbjct: 1 MKITFLGATRTVTGSCYLLEVGAHKFLVDCGMFQGSKLIKALNEKEFLFHPGEIEAVVLT 60
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ V H G LP +V K G PI+ T ++ + + D
Sbjct: 61 HAHVDHSGLLPKLV-KEGFRSPIYCTKSTEELCSILLPD 98
>gi|409437044|ref|ZP_11264192.1| putative beta-lactamase family protein [Rhizobium mesoamericanum
STM3625]
gi|408751276|emb|CCM75348.1| putative beta-lactamase family protein [Rhizobium mesoamericanum
STM3625]
Length = 540
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Query: 20 CYLLQVDEFKILLDCGWDEMFS-MDFVKELKRHVH-----HIDAVLLSYPDVAHLGALPY 73
C+LL+V + +IL+DCG MF KEL IDAVLL++ + H G LP
Sbjct: 19 CFLLEVADGRILIDCG---MFQGSKSEKELNYRPFPFDPAKIDAVLLTHAHIDHSGLLPK 75
Query: 74 MVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ GK G S PI+AT P ++ + + D
Sbjct: 76 L-GKDGFSGPIYATRPTMELCAVMLQD 101
>gi|400602286|gb|EJP69888.1| RNA-metabolising metallo-beta-lactamase [Beauveria bassiana ARSEF
2860]
Length = 962
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 4 IIKMTSLSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
+ + L G ES LL++D KIL+ GWDE F + ++EL++ V + +LL+
Sbjct: 1 MFTFSPLQGAQSESLATQSLLELDGGVKILVGLGWDESFDVAKLEELEKQVPTLSLILLT 60
Query: 62 YPDVAHLGALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLF 102
+ HL A + L P++AT PV +G+ DL+
Sbjct: 61 HATAPHLAAYAHCCKNIPLFTRIPVYATRPVIDLGRTLTQDLY 103
>gi|401826283|ref|XP_003887235.1| beta-CASP domain-containing protein [Encephalitozoon hellem ATCC
50504]
gi|392998394|gb|AFM98254.1| beta-CASP domain-containing protein [Encephalitozoon hellem ATCC
50504]
Length = 639
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
+S + +T L T D C+LL++D +IL++CG M + + DA+LL+
Sbjct: 3 SSFVSLTPLIRT-DTGIYCHLLEIDNVRILVNCGAPYTMDMSIYTSVLPQILSCDAILLT 61
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
V ++GALPY++ + IF+++P+ +G++
Sbjct: 62 SFGVNYVGALPYIL-QNNYYNKIFSSVPIKVLGKI 95
>gi|84489102|ref|YP_447334.1| exonuclease [Methanosphaera stadtmanae DSM 3091]
gi|84372421|gb|ABC56691.1| predicted exonuclease [Methanosphaera stadtmanae DSM 3091]
Length = 635
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDC-----GWDEMFSMDFVKELKRHVHHIDAVL 59
+++TSL G + C LQ K++LDC G DE + F+ + ++ +DAV+
Sbjct: 179 VRLTSLGGFREVGRSCLFLQTPNSKVILDCGVNVAGIDEKTAYPFLNVPEFNLQDLDAVI 238
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
+++ + H G +PY+ G P + T P M + D + +
Sbjct: 239 ITHAHLDHTGFVPYLY-HYGYDGPTYCTTPTRDMMTLLQQDHLDISH 284
>gi|432866809|ref|XP_004070946.1| PREDICTED: integrator complex subunit 11-like [Oryzias latipes]
Length = 599
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
IK+T L D C L+ + I+LDCG ++ D +V + R +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYVTQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPYM G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVD 113
>gi|307215032|gb|EFN89859.1| Integrator complex subunit 11 [Harpegnathos saltator]
Length = 594
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
IK+T L D C L+ + I+LDCG DE DF + E HID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYISE-GAATDHIDC 62
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPY G + PI+ T P + + + D+ +V
Sbjct: 63 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKV 109
>gi|444379990|ref|ZP_21179158.1| Metallo-beta-lactamase family protein, RNA-specific [Enterovibrio
sp. AK16]
gi|443675950|gb|ELT82663.1| Metallo-beta-lactamase family protein, RNA-specific [Enterovibrio
sp. AK16]
Length = 454
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVK--ELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
C+ L + K+L+DCG +F + + +++ VH IDA++L++ + H+G LP+++
Sbjct: 16 CHQLTTESGKLLIDCG---LFQGEETRPLDIEFDVHDIDALILTHAHIDHIGRLPWLLA- 71
Query: 78 CGLSCPIFATIPVYKMGQMFMYDLFQVR 105
G + PI+ T+ K+ M + D +++
Sbjct: 72 AGFNSPIYCTLATAKLIPMMLDDALRLQ 99
>gi|348503157|ref|XP_003439132.1| PREDICTED: integrator complex subunit 11-like [Oreochromis
niloticus]
Length = 601
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
IK+T L D C L+ + I+LDCG ++ D ++ + R +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPYM G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVD 113
>gi|322700762|gb|EFY92515.1| cleavage and polyadenylylation specificity factor, putative
[Metarhizium acridum CQMa 102]
Length = 960
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 10 LSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAH 67
L G + ES LL++D K+L+ GWDE F + ++EL++ V + +LL++ +H
Sbjct: 7 LQGALSESTASQSLLELDGGVKVLVGLGWDETFDVRKLEELEKQVPTLSLILLTHATASH 66
Query: 68 LGALPYMVGKCGL--SCPIFATIPVYKMGQMFMYDLF 102
L A + L P +AT PV +G+ + DL+
Sbjct: 67 LAAYVHCCKNFPLFTRIPAYATRPVIDLGRSLIQDLY 103
>gi|303391170|ref|XP_003073815.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
gi|303302963|gb|ADM12455.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
Length = 496
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS-------MDFVKELKRHVHHIDA 57
+ + L D C L+ ++ ++ DCG F+ ++ + K ID
Sbjct: 1 MNVVPLGAGQDVGRSCILVTINGRTVMFDCGMHMGFNDERRFPDFSYISKTKNFDKVIDC 60
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+++S+ + H GALPY CG S PI+ T+P ++ + + D ++
Sbjct: 61 IIISHFHLDHCGALPYFTEVCGYSGPIYMTLPTKEVCPVLLDDFRKI 107
>gi|321468347|gb|EFX79332.1| hypothetical protein DAPPUDRAFT_304859 [Daphnia pulex]
Length = 597
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHV-HHIDAV 58
IK+T L D C LLQ+ I+LDCG DE DF ++ +D V
Sbjct: 4 IKVTPLGAGQDVGRSCILLQMGGKNIMLDCGMHMGYNDERRFPDFSYIADGNLTESLDCV 63
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++S+ + H GALP+M G + PI+ T P + + + D+ +V
Sbjct: 64 IISHFHLDHCGALPFMTEMVGYNGPIYMTHPTKAIAPILLEDMRKV 109
>gi|156546030|ref|XP_001608037.1| PREDICTED: integrator complex subunit 11-like isoform 1 [Nasonia
vitripennis]
gi|345498393|ref|XP_003428220.1| PREDICTED: integrator complex subunit 11-like isoform 2 [Nasonia
vitripennis]
gi|345498395|ref|XP_003428221.1| PREDICTED: integrator complex subunit 11-like isoform 3 [Nasonia
vitripennis]
Length = 595
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
IK+T L D C L+ V I+LDCG DE DF + ++ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSVGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPATNYIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPY G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|321457255|gb|EFX68345.1| hypothetical protein DAPPUDRAFT_218302 [Daphnia pulex]
Length = 597
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHV-HHIDAV 58
IK+T L D C LLQ+ I+LDCG DE DF ++ +D V
Sbjct: 4 IKVTPLGAGQDVGRSCILLQMGGKNIMLDCGMHMGYNDERRFPDFSYIADGNLTESLDCV 63
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++S+ + H GALP+M G + PI+ T P + + + D+ +V
Sbjct: 64 IISHFHLDHCGALPFMTEMVGYNGPIYMTHPTKAIAPILLEDMRKV 109
>gi|213407230|ref|XP_002174386.1| cleavage factor two Cft2/polyadenylation factor CPSF-73
[Schizosaccharomyces japonicus yFS275]
gi|212002433|gb|EEB08093.1| cleavage factor two Cft2/polyadenylation factor CPSF-73
[Schizosaccharomyces japonicus yFS275]
Length = 786
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 22 LLQVDEFKILLDCGWDEMF---SMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKC 78
LL++D IL+D G D S+D V +L +LLS+ D+AHLG L Y
Sbjct: 17 LLELDGVHILIDPGSDNSLTHPSIDVVPDL---------ILLSHSDLAHLGGLVYACRHY 67
Query: 79 GLSCP-IFATIPVYKMGQMFMYD 100
I+AT+PV MG+M MYD
Sbjct: 68 NWKTAFIYATLPVINMGRMTMYD 90
>gi|357624104|gb|EHJ75000.1| hypothetical protein KGM_18742 [Danaus plexippus]
Length = 595
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRH--VHHIDA 57
IK+T L D C LL + I+LDCG DE DF + ID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|71017515|ref|XP_758988.1| hypothetical protein UM02841.1 [Ustilago maydis 521]
gi|46098766|gb|EAK83999.1| hypothetical protein UM02841.1 [Ustilago maydis 521]
Length = 979
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 43/126 (34%)
Query: 21 YLLQVDEFKILLDCGWDEMF-----------SMDFVKE---------------------- 47
YLLQ+D+ ++L+DCG E F S D E
Sbjct: 50 YLLQMDDVRVLIDCGSTEDFLFHGTSSQSDDSADAEAESQPQPESSSMAQQRQASDLDIN 109
Query: 48 ----------LKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMF 97
L++ ID VLLS+ + HLG Y GL C ++AT+PV MG++
Sbjct: 110 HLKAAPLDTLLRQLASTIDLVLLSHSSLDHLGLYAYAHANLGLRCQVYATMPVQSMGKLT 169
Query: 98 MYDLFQ 103
+ + Q
Sbjct: 170 VLEAIQ 175
>gi|410672076|ref|YP_006924447.1| beta-lactamase-like protein [Methanolobus psychrophilus R15]
gi|409171204|gb|AFV25079.1| beta-lactamase-like protein [Methanolobus psychrophilus R15]
Length = 636
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHVHHIDAVL 59
+++TSL G + C+++ E +I++DCG D M +V E ++ IDAV+
Sbjct: 181 VRITSLGGAKEVGRSCFIISTPESRIMVDCGVNVASDDNMTPYLYVPE-AFPINQIDAVV 239
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
L++ + H G +P ++ K G P++ T P + + D V
Sbjct: 240 LTHAHLDHQGLVP-LLYKYGFEGPVYCTPPTRDLMALLQLDYIDV 283
>gi|301618510|ref|XP_002938656.1| PREDICTED: integrator complex subunit 11 isoform 1 [Xenopus
(Silurana) tropicalis]
gi|301618512|ref|XP_002938657.1| PREDICTED: integrator complex subunit 11 isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 600
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
IK+T L D C L+ + ++LDCG ++ D ++ + R +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTEFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPYM G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDYRKITVD 113
>gi|406670652|ref|ZP_11077897.1| hypothetical protein HMPREF9706_00157 [Facklamia hominis CCUG
36813]
gi|405582168|gb|EKB56174.1| hypothetical protein HMPREF9706_00157 [Facklamia hominis CCUG
36813]
Length = 560
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
IK+ L G +E Y+++V++ +LDCG D++ +DFV LK + +
Sbjct: 4 IKIIPLGGVREEGKSLYVIEVNQSIFVLDCGLLYPEDDLLGIDFVIPDFSYLKENADRVV 63
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ LS+ +GALP+++G+ + P+F T
Sbjct: 64 GIFLSHGHADAVGALPFLLGE--IDAPVFGT 92
>gi|330796066|ref|XP_003286090.1| hypothetical protein DICPUDRAFT_30371 [Dictyostelium purpureum]
gi|325083909|gb|EGC37349.1| hypothetical protein DICPUDRAFT_30371 [Dictyostelium purpureum]
Length = 468
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFSMDF--VKELKRHVHHIDA 57
IK+ L D C ++ + I+ DCG +DE DF + + K+ ID
Sbjct: 3 IKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGYYDERRFPDFSYISKNKQFTKIIDC 62
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++++ + H GALPY G PI+ T+P + + + D ++ D
Sbjct: 63 VIITHFHLDHCGALPYFTEMVGYDGPIYMTLPTKAITPILLEDYRKITVD 112
>gi|440801023|gb|ELR22048.1| cleavage and polyadenylation specific factor 3like, putative
[Acanthamoeba castellanii str. Neff]
Length = 657
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDE---MFSMDFVKELKRHVHHIDA 57
IK+T L D C L+ + I+ DCG +D+ +F+ + + ID
Sbjct: 3 IKVTPLGAGQDVGRSCILVSLGGKNIMFDCGMHMGYDDARRFPDFNFISKSGNFTNAIDC 62
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+++++ + H GALPY CG PI+ T P + + + D
Sbjct: 63 IIITHFHLDHCGALPYFTEMCGYDGPIYMTHPTKAICPILLED 105
>gi|402466940|gb|EJW02336.1| hypothetical protein EDEG_03238 [Edhazardia aedis USNM 41457]
Length = 471
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 60/99 (60%), Gaps = 9/99 (9%)
Query: 6 KMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVH---HIDAVLLSY 62
++TSL D CY+L + ++KILL+ G +++D+ L++H+ +ID +LLS+
Sbjct: 9 RLTSLYNK-DGHNVCYILVIGKYKILLNIG---AYNLDW-SYLEKHIEEIKNIDFILLSH 63
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDL 101
D+ G LP++ K G P +AT P++++ ++ + +L
Sbjct: 64 YDLRFTGGLPFLT-KNGCFKPTYATSPIFELSKICINEL 101
>gi|390358942|ref|XP_001200107.2| PREDICTED: uncharacterized protein LOC763955 [Strongylocentrotus
purpuratus]
Length = 1471
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 15 DESPPCYLLQVDEFKILLDCGWDEMFS-------MDFVKELKRHVHHIDAVLLSYPDVAH 67
D C LL + I+LDCG F+ ++ + R H+DAV++S+ + H
Sbjct: 118 DVGRSCILLTIGSKNIMLDCGMHMGFNDERRFPDFSYINKNGRLTDHLDAVIISHFHLDH 177
Query: 68 LGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
GALP+M G PI+ T P + + + D
Sbjct: 178 CGALPHMSEIVGYDGPIYMTQPTKAICPILLED 210
>gi|449686516|ref|XP_002164154.2| PREDICTED: integrator complex subunit 11-like [Hydra
magnipapillata]
Length = 526
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
IK+ L D C ++ + I+LDCG DE DF + + + HID
Sbjct: 4 IKVVPLGAGQDVGRSCIIVTLGGKNIMLDCGMHMGYNDERKFPDFTYIAKTGPYTPHIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
+++S+ + H GALPY CG PI+ T P + + + D +++ +
Sbjct: 64 LIISHFHLDHCGALPYFTEMCGYDGPIYMTHPTKAICPILLEDFRKIQVE 113
>gi|406604299|emb|CCH44271.1| Cleavage and polyadenylation specificity factor subunit
[Wickerhamomyces ciferrii]
Length = 795
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 22 LLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLS 81
LL+ D ++L D GWD + + ++ ++ + ID ++LS+P +G Y+ + L+
Sbjct: 18 LLEFDGVRVLADPGWDGITDISYLDKI---LPTIDIIVLSHPTTNFIGCYAYLAFR-DLN 73
Query: 82 CPIFATIPVYKMGQMFMYDLFQ 103
P++AT+P +G++ DL++
Sbjct: 74 IPVYATLPTTNLGRVATLDLYR 95
>gi|291000374|ref|XP_002682754.1| predicted protein [Naegleria gruberi]
gi|284096382|gb|EFC50010.1| predicted protein [Naegleria gruberi]
Length = 458
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDAVLLSY 62
L D C ++ + I+ DCG DE DF + + + ID V++S+
Sbjct: 1 LGAGQDVGRSCVIVTIGRKTIMFDCGMHMGYNDERRFPDFKFISKNGQFTQTIDCVIISH 60
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
+ H GALPY CG PI+ T P + + + D +V D
Sbjct: 61 FHLDHCGALPYFTEVCGYDGPIYMTYPTKAIAPILLEDFRRVMVD 105
>gi|410928941|ref|XP_003977858.1| PREDICTED: integrator complex subunit 11-like [Takifugu rubripes]
Length = 601
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
IK+T L D C L+ + I+LDCG ++ D +V + R +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYVTQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALP+M G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPFMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVD 113
>gi|339244969|ref|XP_003378410.1| putative metallo-beta-lactamase domain protein [Trichinella
spiralis]
gi|316972680|gb|EFV56345.1| putative metallo-beta-lactamase domain protein [Trichinella
spiralis]
Length = 562
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
IK+ L + C L+ + ++LDCG DE DF + + + ID
Sbjct: 4 IKIVPLGAGQEVGRSCILVTIGGKNVMLDCGMHMGFNDERRFPDFSYITQKGKLDDFIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV----RYDTFL 110
V++S+ + H GALPYM G + PI+ TIP + + + D +V R D F+
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYNGPIYMTIPTKAIVPVLLEDFRKVQVKYRNDPFI 120
>gi|227499050|ref|ZP_03929187.1| RNA-metabolising metallo-beta-lactamase [Acidaminococcus sp. D21]
gi|226904499|gb|EEH90417.1| RNA-metabolising metallo-beta-lactamase [Acidaminococcus sp. D21]
Length = 538
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS-MDFVKELKR-----HVHHID 56
+I+K+ L + C++L+V KILLDCG MF ++ L R H ID
Sbjct: 2 TIMKIRFLGADKVVTGSCHMLEVGSKKILLDCG---MFQGPKLIRSLNRKPFAFHPGEID 58
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
AV+LS+ V H G LP +V K G PI+ T ++ ++ + D
Sbjct: 59 AVVLSHAHVDHSGLLPRLV-KEGFKGPIYCTHVTKELCEILLPD 101
>gi|288931295|ref|YP_003435355.1| KH-domain/beta-lactamase-domain protein [Ferroglobus placidus DSM
10642]
gi|288893543|gb|ADC65080.1| KH-domain/beta-lactamase-domain protein [Ferroglobus placidus DSM
10642]
Length = 634
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD----EMFSMDFVKELKRHVHHIDAVLL 60
+++T L G+ + CYLLQ E KI++DCG + +V E+ + IDAV++
Sbjct: 180 VRITFLGGSREVGRSCYLLQTPESKIMIDCGVNVSNLNQTPYLYVPEVTP-LDSIDAVVV 238
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++ + H G +P + K G PI+ T P + + D V
Sbjct: 239 THAHLDHCGLIPILY-KYGYKGPIYLTQPTRDLMVLLQLDFIDV 281
>gi|302793925|ref|XP_002978727.1| hypothetical protein SELMODRAFT_109555 [Selaginella moellendorffii]
gi|300153536|gb|EFJ20174.1| hypothetical protein SELMODRAFT_109555 [Selaginella moellendorffii]
Length = 522
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 14 MDESPPCYLLQVDEFKILLDCG-----WDEMFSMDF--VKELKRHVHHIDAVLLSYPDVA 66
D C ++ + KI+ DCG DE DF + + H ID V++++ +
Sbjct: 9 QDVGKSCVIVSMGGKKIMFDCGMHMGYQDERRFPDFSQISKTGDFTHEIDCVIVTHFHLD 68
Query: 67 HLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
H+GALPY CG P++ T P + + + D ++ D
Sbjct: 69 HVGALPYFTEVCGYEGPVYMTYPTKALAPIMLEDYRKIMVD 109
>gi|307170840|gb|EFN62951.1| Integrator complex subunit 11 [Camponotus floridanus]
Length = 595
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
IK+T L D C L+ + I+LDCG DE DF + ++ID
Sbjct: 4 IKITPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIVAEGPATNYIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPY G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|241245173|ref|XP_002402434.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
gi|215496345|gb|EEC05985.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
Length = 596
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
I +T L D C LL + I+LDCG DE DF V + H+D
Sbjct: 4 ISVTPLGAGQDVGRSCILLSIGGKNIMLDCGMHMGYNDERRFPDFSYVTQEGPLNDHLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
+++S+ + H GALPYM G + P++ T P + + + D ++ D
Sbjct: 64 LIISHFHLDHCGALPYMTEMVGYAGPVYMTHPTKAICPILLEDFRKITVD 113
>gi|302787435|ref|XP_002975487.1| hypothetical protein SELMODRAFT_52099 [Selaginella moellendorffii]
gi|300156488|gb|EFJ23116.1| hypothetical protein SELMODRAFT_52099 [Selaginella moellendorffii]
Length = 517
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 14 MDESPPCYLLQVDEFKILLDCG-----WDEMFSMDF--VKELKRHVHHIDAVLLSYPDVA 66
D C ++ + KI+ DCG DE DF + + H ID V++++ +
Sbjct: 4 QDVGKSCVIVSMGGKKIMFDCGMHMGYQDERRFPDFSQISKTGDFTHEIDCVIVTHFHLD 63
Query: 67 HLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
H+GALPY CG P++ T P + + + D ++ D
Sbjct: 64 HVGALPYFTEVCGYEGPVYMTYPTKALAPIMLEDYRKIMVD 104
>gi|11498093|ref|NP_069318.1| mRNA 3'-end processing factor [Archaeoglobus fulgidus DSM 4304]
gi|2650146|gb|AAB90756.1| mRNA 3'-end processing factor, putative [Archaeoglobus fulgidus DSM
4304]
Length = 632
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD--EMFSMD--FVKELKRHVHHIDAVLL 60
+++T L G+ + CYLLQ E +IL+DCG + + S +V E++ + +DAV++
Sbjct: 178 VRVTFLGGSREVGRSCYLLQTPESRILIDCGVNVSNLSSTPYLYVPEVQP-LDALDAVVI 236
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++ + H G +P ++ K G PI+ T P + + D +V
Sbjct: 237 THAHLDHCGLVP-LLYKFGYRGPIYLTPPTRDLMVLLQLDFLEV 279
>gi|395518397|ref|XP_003763348.1| PREDICTED: integrator complex subunit 11 [Sarcophilus harrisii]
Length = 393
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
IK+T L D C L+ + ++LDCG ++ D ++ + R +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVD 113
>gi|298674377|ref|YP_003726127.1| KH-domain/beta-lactamase-domain-containing protein [Methanohalobium
evestigatum Z-7303]
gi|298287365|gb|ADI73331.1| KH-domain/beta-lactamase-domain protein [Methanohalobium
evestigatum Z-7303]
Length = 638
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHVHHIDAVL 59
+++TSL G + C++L E ++++DCG + M +V E + +DAV+
Sbjct: 181 VRITSLGGCKEVGRSCFILSTPESRVMIDCGVNIGSDENMTPYLYVPE-AYPLSQLDAVI 239
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
L++ + H G +P ++ K G P++ T+P + + D V
Sbjct: 240 LTHAHLDHSGFIP-LLYKYGYQGPVYCTLPTRDLSALLQLDYIDV 283
>gi|296815164|ref|XP_002847919.1| cleavage and polyadenylation specificity factor subunit 2
[Arthroderma otae CBS 113480]
gi|238840944|gb|EEQ30606.1| cleavage and polyadenylation specificity factor subunit 2
[Arthroderma otae CBS 113480]
Length = 1000
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGAL 71
KIL+D GWDE F +KEL+RH+ + +LL++ +HLGA
Sbjct: 29 KILVDVGWDESFDTSALKELERHIPTLSLILLTHATPSHLGAF 71
>gi|401827835|ref|XP_003888210.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
gi|392999410|gb|AFM99229.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
Length = 496
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS-------MDFVKELKRHVHHIDA 57
+ + L D C L+ + I+ DCG F+ ++ + K ID
Sbjct: 1 MNVVPLGAGQDVGRSCVLVTIGGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFDKVIDC 60
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPY CG + PI+ T+P ++ + + D ++
Sbjct: 61 VIISHFHLDHCGALPYFTEVCGYNGPIYMTLPTKEVCPVLLDDFRKI 107
>gi|380011463|ref|XP_003689822.1| PREDICTED: integrator complex subunit 11-like [Apis florea]
Length = 595
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKR--HVHHIDA 57
IK+T L D C L+ + I+LDCG DE DF + ++ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIIPEGPATNYIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPY G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|340728535|ref|XP_003402577.1| PREDICTED: integrator complex subunit 11-like [Bombus terrestris]
gi|350421011|ref|XP_003492700.1| PREDICTED: integrator complex subunit 11-like [Bombus impatiens]
Length = 595
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRH--VHHIDA 57
IK+T L D C L+ + I+LDCG DE DF + ++ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIIPEGPTTNYIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPY G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|332030612|gb|EGI70300.1| Integrator complex subunit 11 [Acromyrmex echinatior]
Length = 536
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
IK+T L D C L+ + I+LDCG DE DF + ++ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPATNYIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPY G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|396081352|gb|AFN82969.1| putative cleavage and polyadenylation [Encephalitozoon romaleae
SJ-2008]
Length = 639
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79
C+LL++D KIL++CG M + + DA+LL+ V + GALPY++ +
Sbjct: 20 CHLLEIDNVKILVNCGAPYTMDMSIYTPILPQILSCDAILLTSFGVNYAGALPYIL-QNN 78
Query: 80 LSCPIFATIPVYKMGQM 96
+F+++P+ +G++
Sbjct: 79 YYNKVFSSVPIKTLGKI 95
>gi|383859336|ref|XP_003705151.1| PREDICTED: integrator complex subunit 11-like isoform 1 [Megachile
rotundata]
Length = 595
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
IK+T L D C L+ + I+LDCG DE DF + ++ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPATNYIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPY G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|352683091|ref|YP_004893615.1| mRNA 3'-end processing factor [Thermoproteus tenax Kra 1]
gi|350275890|emb|CCC82537.1| mRNA 3'-end processing factor [Thermoproteus tenax Kra 1]
Length = 635
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD-EMFSMDFVKELKRHVHHIDAVLLSYP 63
I ++ L +M+ L+ E KILLDCG + +F + + +DAV+LS+
Sbjct: 175 ITISFLGASMEVGRSAILVDTTESKILLDCGLKPSQYEEEFPLLEQVDLDELDAVVLSHA 234
Query: 64 DVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
+ H+G LPY+ K G P++ T P + + + D +++
Sbjct: 235 HMDHVGCLPYLY-KYGYKGPVYMTDPTKYLTYILLTDYVELK 275
>gi|328776642|ref|XP_003249190.1| PREDICTED: integrator complex subunit 11-like [Apis mellifera]
Length = 603
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKR--HVHHIDA 57
IK+T L D C L+ + I+LDCG DE DF + ++ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIIPEGPATNYIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPY G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>gi|396082329|gb|AFN83939.1| putative beta-lactamase fold-containingexonuclease [Encephalitozoon
romaleae SJ-2008]
Length = 496
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS-------MDFVKELKRHVHHIDA 57
+ + L D C L+ + I+ DCG F+ ++ + K ID
Sbjct: 1 MNVVPLGAGQDVGRSCVLVTIGGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFDKAIDC 60
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPY CG + P++ T+P ++ + + D ++
Sbjct: 61 VVISHFHLDHCGALPYFTEVCGYNGPVYMTLPTKEVCPVLLDDFRKI 107
>gi|73667742|ref|YP_303757.1| cleavage and polyadenylation specificity factor [Methanosarcina
barkeri str. Fusaro]
gi|72394904|gb|AAZ69177.1| cleavage and polyadenylation specificity factor [Methanosarcina
barkeri str. Fusaro]
Length = 637
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHVHHIDAVL 59
+++TSL G + C+LL E +IL+DCG + M +V E+ ++ IDAV+
Sbjct: 181 VRVTSLGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEV-FPLNQIDAVI 239
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+++ + H G +P + K G P++ T P + + D V
Sbjct: 240 VTHAHLDHQGLVPLLF-KFGYEGPVYCTPPTRDLMVLLQLDYIDV 283
>gi|341890123|gb|EGT46058.1| hypothetical protein CAEBREN_05882 [Caenorhabditis brenneri]
Length = 618
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
IK+ L D C L+ + +++DCG + D ++ R ++D
Sbjct: 8 IKIVPLGAGQDVGRSCILITIGGKNVMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDC 67
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H G+LP+M G PI+ T P + Q+ + D +V+ D
Sbjct: 68 VIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAIAQVLLEDYRKVQCD 117
>gi|159487337|ref|XP_001701679.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280898|gb|EDP06654.1| predicted protein [Chlamydomonas reinhardtii]
Length = 460
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 15 DESPPCYLLQVDEFKILLDCGWDEMF-------SMDFVKELKRHVHHIDAVLLSYPDVAH 67
D C ++++ ++ DCG F + R IDA+++++ + H
Sbjct: 10 DVGRSCCIVRMAGRTVMFDCGAHFGFRDARRFPEFGLLSRAGRFTELIDALVITHFHIDH 69
Query: 68 LGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
+GALPY CG P+ T P + M + + D +V D
Sbjct: 70 IGALPYFTEVCGYRGPVLMTYPTFAMAPIMLEDYVKVNAD 109
>gi|162452442|ref|YP_001614809.1| hypothetical protein sce4166 [Sorangium cellulosum So ce56]
gi|161163024|emb|CAN94329.1| unnamed protein product [Sorangium cellulosum So ce56]
Length = 468
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 9 SLSGTMDESPPCYLLQVDEFKILLDCGWDE---MFSMDFVKELKRHVHHIDAVLLSYPDV 65
+++G+M +LL+ + +LLDCG + S + + L +H IDAV+LS+ +
Sbjct: 11 TVTGSM------HLLRTRDATVLLDCGLYQGRRAESFERNRRLPLPIHEIDAVVLSHAHI 64
Query: 66 AHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
H GALP +V K G PI+AT + + + D
Sbjct: 65 DHSGALPILV-KNGYEGPIYATPATRDLAAVMLRD 98
>gi|340381556|ref|XP_003389287.1| PREDICTED: integrator complex subunit 11-like [Amphimedon
queenslandica]
Length = 610
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVH-H 54
S I++ L D C L+ + I+ DCG DE DF + + + +H +
Sbjct: 2 SDIRIVPLGAGQDVGRSCILVSMGGKNIMFDCGMHMGYNDERRFPDFTYITDTGQTLHDY 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
I+ V+LS+ + H GALPY CG + PI+ T P + + + D +V D
Sbjct: 62 INCVILSHFHLDHCGALPYFTEMCGYNGPIYMTHPTKAICPVLLEDFRRVCVD 114
>gi|352684970|ref|YP_004896955.1| RNA-metabolising metallo-beta-lactamase [Acidaminococcus intestini
RyC-MR95]
gi|350279625|gb|AEQ22815.1| RNA-metabolising metallo-beta-lactamase [Acidaminococcus intestini
RyC-MR95]
Length = 535
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 20 CYLLQVDEFKILLDCGWDEMFS-MDFVKELKR-----HVHHIDAVLLSYPDVAHLGALPY 73
C++L+V KILLDCG MF ++ L R H IDAV+LS+ V H G LP
Sbjct: 16 CHMLEVGSKKILLDCG---MFQGPKLIRSLNRKPFAFHPGEIDAVVLSHAHVDHSGLLPR 72
Query: 74 MVGKCGLSCPIFATIPVYKMGQMFMYD 100
+V K G PI+ T ++ ++ + D
Sbjct: 73 LV-KEGFKGPIYCTHVTKELCEILLPD 98
>gi|383784896|ref|YP_005469466.1| metallo-beta-lactamase family protein [Leptospirillum ferrooxidans
C2-3]
gi|383083809|dbj|BAM07336.1| putative metallo-beta-lactamase family protein [Leptospirillum
ferrooxidans C2-3]
Length = 471
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 20 CYLLQVDEFKILLDCGW----DEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMV 75
C+LL++D F++L+DCG DE+F + IDAVLL++ + H G LP +
Sbjct: 16 CHLLEMDGFRLLVDCGLFQGADELFGGE-SDPFGFDPREIDAVLLTHAHLDHCGRLPLLF 74
Query: 76 GKCGLSCPIFATIPVYKMGQMFMYD 100
+ G PI++T P + + + D
Sbjct: 75 -RQGFRGPIYSTQPTRLLSGIVLQD 98
>gi|343429654|emb|CBQ73226.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1039
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 48/131 (36%)
Query: 21 YLLQVDEFKILLDCGWDEMF---------------------------------------- 40
YLLQ+D+ ++L+DCG E F
Sbjct: 54 YLLQMDDVRVLIDCGSAEDFLFHGSAQADDDDNAAAANDAESSSQQQPESSSMAQQRQAS 113
Query: 41 --SMDFVKE------LKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYK 92
++ +K L++ ID VLLS+ + HLG Y K GL C ++AT+PV
Sbjct: 114 DLDLNHLKAAPLDALLRQLAPTIDLVLLSHSSLDHLGLYAYAHAKLGLRCQVYATMPVQS 173
Query: 93 MGQMFMYDLFQ 103
MG++ + + Q
Sbjct: 174 MGKLTVLEAIQ 184
>gi|395840791|ref|XP_003793235.1| PREDICTED: integrator complex subunit 11 isoform 1 [Otolemur
garnettii]
Length = 600
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG FS D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|359415409|ref|ZP_09207872.1| mRNA cleavage/polyadenylation specificity factor, 100 kD subunit
[Candidatus Haloredivivus sp. G17]
gi|358034266|gb|EHK02708.1| mRNA cleavage/polyadenylation specificity factor, 100 kD subunit
[Candidatus Haloredivivus sp. G17]
Length = 623
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD---EMFSMD---FVKELKRHVHHIDAV 58
I+++SL G C L+Q +E +L+D G + E S D ++ + + +DAV
Sbjct: 173 IRISSLGGFRQVGRSCVLVQTEESNVLMDAGINPGAEPGSQDNFPYLNAPELDLRDLDAV 232
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+LS+ + H G +PY+ K G P++ T P M M D
Sbjct: 233 VLSHAHMDHCGMIPYLY-KMGYDGPLYCTKPTRDMMIMLTLD 273
>gi|431795752|ref|YP_007222656.1| metal-dependent Rnase [Echinicola vietnamensis DSM 17526]
gi|430786517|gb|AGA76646.1| putative metal-dependent RNase, consists of a
metallo-beta-lactamase domain and an RNA-binding KH
domain protein [Echinicola vietnamensis DSM 17526]
Length = 466
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 14/104 (13%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH--------VHHID 56
I++ L G + YLL++D+ KIL+DCG +F +KEL++ ID
Sbjct: 3 IRVKFLGGAQTVTGSRYLLEIDKTKILIDCG---LFQG--IKELRKRNWDPFPISAAAID 57
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
VLL++ + H G LP +V K G PI T P + + + D
Sbjct: 58 MVLLTHAHIDHSGYLPKLV-KEGFKGPILLTEPTMDLVKTLLLD 100
>gi|350585498|ref|XP_003127541.3| PREDICTED: integrator complex subunit 11-like [Sus scrofa]
Length = 599
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG FS D ++ R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFSDDRRFPDFSYITRHGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVD 113
>gi|302846726|ref|XP_002954899.1| hypothetical protein VOLCADRAFT_65253 [Volvox carteri f.
nagariensis]
gi|300259874|gb|EFJ44098.1| hypothetical protein VOLCADRAFT_65253 [Volvox carteri f.
nagariensis]
Length = 477
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 15 DESPPCYLLQVDEFKILLDCGWDEMF-------SMDFVKELKRHVHHIDAVLLSYPDVAH 67
D C ++++ ++ DCG F + R IDAV++++ H
Sbjct: 23 DVGRSCCIVRMAGRTVMFDCGAHFGFRDARRFPEFGLLSRAGRFTEIIDAVVITHFHTDH 82
Query: 68 LGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
LGALPY CG PI T P + + + + D +V D
Sbjct: 83 LGALPYFTEICGYRGPILMTYPTFAIAPIMLADYVKVNAD 122
>gi|313238583|emb|CBY13629.1| unnamed protein product [Oikopleura dioica]
Length = 618
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFV----KELKRHVHHI 55
I++ L D C L+ + ++ DCG D DF + HI
Sbjct: 4 IRIVPLGAGQDVGRSCILVSIGNKNVMFDCGMHMGYQDARRFPDFNYITGGDQTTLTPHI 63
Query: 56 DAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
DAV++S+ + H GALPYM + G PI+ T+P + + + D +V
Sbjct: 64 DAVIISHFHLDHCGALPYMSEQVGYEGPIYMTMPTKVICPILLEDFRKV 112
>gi|330508618|ref|YP_004385046.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta concilii GP6]
gi|328929426|gb|AEB69228.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta concilii GP6]
Length = 635
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHVHHIDAVL 59
+++T+L G + C LL E +I++DCG D +V E+ ++ IDAV+
Sbjct: 181 VRITTLGGCREVGRSCMLLSTPESRIIIDCGINVGSDDSATPYLYVPEV-YPLNQIDAVV 239
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
L++ + H G +P M+ K G PI+ T P + + D ++
Sbjct: 240 LTHAHLDHAGLVP-MLYKYGYEGPIYCTPPTRDLFVLLQLDYIEI 283
>gi|440911726|gb|ELR61363.1| Integrator complex subunit 11 [Bos grunniens mutus]
Length = 599
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG FS D ++ R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVD 113
>gi|296479091|tpg|DAA21206.1| TPA: cleavage and polyadenylation specific factor 3-like [Bos
taurus]
Length = 599
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG FS D ++ R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVD 113
>gi|274326663|ref|NP_001094578.1| integrator complex subunit 11 [Bos taurus]
gi|152941100|gb|ABS44987.1| related to CPSF subunits 68 kDa [Bos taurus]
Length = 599
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG FS D ++ R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVD 113
>gi|343515679|ref|ZP_08752730.1| metallo-beta-lactamase family protein RNA-specific [Vibrio sp.
N418]
gi|342797849|gb|EGU33486.1| metallo-beta-lactamase family protein RNA-specific [Vibrio sp.
N418]
Length = 452
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVK--ELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
C+ LQVD IL+DCG +F + E++ HI A+LL++ + H+G LP+++ K
Sbjct: 16 CHELQVDGQAILVDCG---LFQGQDKRPLEVEFATQHIQALLLTHAHIDHIGRLPWLLAK 72
Query: 78 CGLSCPIFATIPVYKMGQMFMYDLFQVR 105
G PI+ T +M + + D +++
Sbjct: 73 -GFKQPIYCTEATAEMVPLMLEDSLKLQ 99
>gi|328766828|gb|EGF76880.1| hypothetical protein BATDEDRAFT_14507, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 475
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS-------MDFVKELKRHVHHIDA 57
I++ L D C L+ + I+ DCG +S ++ + + ID
Sbjct: 8 IRVIPLGAGQDVGRSCVLVTMGSKNIMFDCGMHMGYSDHRRFPDFTYISKSGDYTSMIDC 67
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPY CG PI+ T P + + + D+ +V
Sbjct: 68 VIISHFHLDHCGALPYFTEICGYDGPIYMTGPTKAIAPILLEDMRKV 114
>gi|269793165|ref|YP_003318069.1| beta-lactamase domain-containing protein [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100800|gb|ACZ19787.1| beta-lactamase domain protein [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 531
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVH-----HIDAVLLSYPDVAHLGALPYM 74
CYLL+ D++++L+DCG + D + + V +DAVLL++ + H G LP +
Sbjct: 16 CYLLETDDYRMLVDCGIHQGRDEDDLTRSSKGVFPFNPASVDAVLLTHAHMDHSGLLPLL 75
Query: 75 VGKCGLSCPIFAT 87
V + G PI AT
Sbjct: 76 V-RLGFKGPIMAT 87
>gi|224108267|ref|XP_002314781.1| predicted protein [Populus trichocarpa]
gi|222863821|gb|EEF00952.1| predicted protein [Populus trichocarpa]
Length = 639
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDAVLLSY 62
L + C ++ ++ +I+ DCG D DF + + + H +D V++++
Sbjct: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSRDFDHSLDCVIITH 67
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
+ H+GALPY CG + PI+ T P + + + D +V D
Sbjct: 68 FHLDHVGALPYFTEVCGYNGPIYMTYPTKALAPLMLEDFRKVLVD 112
>gi|403221737|dbj|BAM39869.1| conserved hypothetical protein [Theileria orientalis strain
Shintoku]
Length = 425
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
IK+ G DE + K+LL+CGW F + ++ R + +D +L++ D
Sbjct: 21 IKLEDTEGNYDED--------NVLKVLLNCGWSLEFDEEKLELYNRKIEDVDVILITDGD 72
Query: 65 VAHLGALPYMVGK 77
AH GA+P++V K
Sbjct: 73 FAHAGAVPWLVSK 85
>gi|426240429|ref|XP_004014105.1| PREDICTED: integrator complex subunit 11 [Ovis aries]
Length = 515
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG FS D ++ R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVD 113
>gi|171184545|ref|YP_001793464.1| beta-lactamase domain-containing protein [Pyrobaculum neutrophilum
V24Sta]
gi|170933757|gb|ACB39018.1| beta-lactamase domain protein [Pyrobaculum neutrophilum V24Sta]
Length = 634
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFSMDFVKELKRHVHHIDAVL 59
I +T L M+ L+ E +LLDCG +DE F M ++ R +DAV+
Sbjct: 174 ITVTFLGAAMEVGRSAILVSTTESNVLLDCGLKPGQYDEDFPMLDAVDIDR----LDAVV 229
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
L++ + H+G LP++ K G P++ T P + + D +++
Sbjct: 230 LTHAHMDHVGCLPFLY-KYGYRGPVYMTDPTKYQAFILLMDYIELK 274
>gi|145590331|ref|YP_001152333.1| beta-lactamase domain-containing protein [Pyrobaculum arsenaticum
DSM 13514]
gi|145282099|gb|ABP49681.1| beta-lactamase domain protein [Pyrobaculum arsenaticum DSM 13514]
Length = 635
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFSMDFVKELKRHVHHIDAVL 59
I +T L M+ L+ E +LLDCG +DE F M + ++ R +DAV+
Sbjct: 175 ITVTFLGAAMEVGRSAILVSTTESNVLLDCGLKPSQYDEDFPMLDLVDIDR----LDAVV 230
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
L++ + H+G LP++ K G P++ T P + + D +++
Sbjct: 231 LTHAHMDHVGCLPFLF-KYGYKGPVYMTDPTKYQAFILLTDYVELK 275
>gi|19074744|ref|NP_586250.1| similarity to HYPOTHETICAL PROTEIN YO47_METJA [Encephalitozoon
cuniculi GB-M1]
gi|19069386|emb|CAD25854.1| similarity to HYPOTHETICAL PROTEIN YO47_METJA [Encephalitozoon
cuniculi GB-M1]
gi|449329879|gb|AGE96147.1| hypothetical protein ECU10_1350 [Encephalitozoon cuniculi]
Length = 496
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS-------MDFVKELKRHVHHIDA 57
+ + L D C L+ + I+ DCG F+ ++ + K ID
Sbjct: 1 MNVIPLGAGQDVGRSCILVSIKGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFDKVIDC 60
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+++S+ + H GALPY CG PI+ T+P ++ + + D ++
Sbjct: 61 IIISHFHLDHCGALPYFTEVCGYGGPIYMTLPTKEVCPVLLDDFRKI 107
>gi|147919476|ref|YP_686784.1| mRNA cleavage/polyadenylation specificity factor, 100 kD subunit
[Methanocella arvoryzae MRE50]
gi|110622180|emb|CAJ37458.1| mRNA cleavage/polyadenylation specificity factor,100 kD subunit
[Methanocella arvoryzae MRE50]
Length = 636
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-----FVKELKRHVHHIDAVL 59
I++T+L G + +LL E +IL+DCG + + +V E+ + IDAV+
Sbjct: 181 IRVTTLGGCKEVGRSSFLLSTPETRILIDCGVNTGAESNGTPYLYVPEVSP-LSSIDAVV 239
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+++ + H G +P + K G PI+AT P + + D +V
Sbjct: 240 ITHAHLDHCGIVPLLF-KYGYEGPIYATPPTRDLSALLQLDYIEV 283
>gi|442751667|gb|JAA67993.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit [Ixodes ricinus]
Length = 596
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
I +T L D C LL + I+LDCG DE DF V + H+D
Sbjct: 4 ISVTPLGAGQDVGRSCILLSIGGKNIMLDCGMHMGYNDERRFPDFSYVTQEGPLNDHLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
+++ + + H GALPYM G + P++ T P + + + D ++ D
Sbjct: 64 LIIGHFHLDHCGALPYMTEMVGYAGPVYMTHPTKAICPILLEDFRKITVD 113
>gi|313224131|emb|CBY43589.1| unnamed protein product [Oikopleura dioica]
Length = 213
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFSMDFV----KELKRHVHHI 55
I++ L D C L+ + ++ DCG D DF + HI
Sbjct: 4 IRIVPLGAGQDVGRSCILVSIGNKNVMFDCGMHMGYQDARRFPDFNYITGGDQTTLTPHI 63
Query: 56 DAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
DAV++S+ + H GALPYM + G PI+ T+P + + + D +V
Sbjct: 64 DAVIISHFHLDHCGALPYMSEQVGYEGPIYMTMPTKVICPILLEDFRKV 112
>gi|207079923|ref|NP_001128922.1| DKFZP459J1110 protein [Pongo abelii]
gi|56403907|emb|CAI29738.1| hypothetical protein [Pongo abelii]
Length = 600
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYVTHPTQAICPILLEDYRKIAVD 113
>gi|327311459|ref|YP_004338356.1| beta-lactamase domain-containing protein [Thermoproteus uzoniensis
768-20]
gi|326947938|gb|AEA13044.1| beta-lactamase domain protein [Thermoproteus uzoniensis 768-20]
Length = 635
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD-EMFSMDFVKELKRHVHHIDAVLLSYP 63
I ++ L +M+ L+ E K+LLDCG + +F + + +DAV+LS+
Sbjct: 175 ITVSFLGASMEVGRSAILVDTTESKVLLDCGLKPSQYEEEFPLLEQVDLDSLDAVVLSHA 234
Query: 64 DVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
+ H+G LPY+ K G P++ T P + + + D +++
Sbjct: 235 HMDHVGCLPYLY-KYGYRGPVYMTDPTKYLTYILLTDYVELK 275
>gi|119872614|ref|YP_930621.1| beta-lactamase domain-containing protein [Pyrobaculum islandicum
DSM 4184]
gi|119674022|gb|ABL88278.1| beta-lactamase domain protein [Pyrobaculum islandicum DSM 4184]
Length = 640
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 24/119 (20%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFSMDFVKELKRHVHHIDAVL 59
I +T L M+ L+ E ILLDCG +DE F + ++ R +DAV+
Sbjct: 180 ITVTFLGAAMEVGRSAILVSTTESNILLDCGLKPGQYDEDFPLLDAVDIDR----LDAVV 235
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLEL 118
L++ + H+G LP++ K G P++ T P +Y TF+ L+ +EL
Sbjct: 236 LTHAHMDHVGCLPFLY-KYGYRGPVYMTDP--------------TKYQTFILLMDYIEL 279
>gi|355680857|gb|AER96662.1| cleavage and polyadenylation specific factor 3-like protein
[Mustela putorius furo]
Length = 440
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG FS D ++ R +D
Sbjct: 13 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRNGRLTDFLDC 72
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 73 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 122
>gi|262276306|ref|ZP_06054115.1| metallo-beta-lactamase family protein RNA-specific [Grimontia
hollisae CIP 101886]
gi|262220114|gb|EEY71430.1| metallo-beta-lactamase family protein RNA-specific [Grimontia
hollisae CIP 101886]
Length = 451
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVK--ELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
C+ L + K+L+DCG +F D V+ E+ V IDA++L++ + H+G LP+++
Sbjct: 16 CHQLTTENGKLLIDCG---LFQGDEVRALEIDFDVQDIDALILTHAHIDHIGRLPWLLA- 71
Query: 78 CGLSCPIFATIPVYKMGQMFMYDLFQVR 105
G + PI+ T + + + D +++
Sbjct: 72 AGFTSPIYCTSATASLVPLMLDDALRLQ 99
>gi|367477390|ref|ZP_09476743.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 285]
gi|365270330|emb|CCD89211.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 285]
Length = 530
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKR-----HVHHIDAVLLSYPDVAHLGALPYM 74
CYL++ D+ +IL+DCG + +KEL H IDAVLL++ + H G LP +
Sbjct: 18 CYLVRTDQGQILIDCGLFQ--GQKTLKELNYGDFPFRPHDIDAVLLTHAHIDHSGLLPKL 75
Query: 75 VGKCGLSCPIFAT 87
V + G IFAT
Sbjct: 76 V-RMGFDGKIFAT 87
>gi|303389227|ref|XP_003072846.1| putative cleavage and polyadenylation specificity factor
[Encephalitozoon intestinalis ATCC 50506]
gi|303301989|gb|ADM11486.1| putative cleavage and polyadenylation specificity factor
[Encephalitozoon intestinalis ATCC 50506]
Length = 639
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
+S + +T L T + C+LL+VD KIL++CG M + + DA+LL+
Sbjct: 3 SSFVSLTPLIRT-ETGIYCHLLEVDNVKILINCGASYTMDMSIYAPILPQILSCDAILLT 61
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
+ +G LPY++ + +F+++PV +G++
Sbjct: 62 SFGINCIGGLPYIL-QNNYYNKVFSSVPVKVLGKI 95
>gi|410657214|ref|YP_006909585.1| Metallo-beta-lactamase family protein, RNA-specific [Dehalobacter
sp. DCA]
gi|410660249|ref|YP_006912620.1| Metallo-beta-lactamase family protein, RNA-specific [Dehalobacter
sp. CF]
gi|409019569|gb|AFV01600.1| Metallo-beta-lactamase family protein, RNA-specific [Dehalobacter
sp. DCA]
gi|409022605|gb|AFV04635.1| Metallo-beta-lactamase family protein, RNA-specific [Dehalobacter
sp. CF]
Length = 582
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Query: 20 CYLLQVDEFKILLDCGWDEMFS-MDFVKELKRHV-----HHIDAVLLSYPDVAHLGALPY 73
CYLL+ + +IL+DCG MF +KEL + +DAV+L++ + H G +P
Sbjct: 16 CYLLETTDTRILIDCG---MFQGSKIMKELNYGAFPFDPNLLDAVILTHAHIDHSGLIPK 72
Query: 74 MVGKCGLSCPIFATIPVYKMGQMFMYD 100
++ K G S PI+AT ++ + + D
Sbjct: 73 LIKK-GFSGPIYATTETIELCSVMLPD 98
>gi|91794640|ref|YP_564291.1| RNA-metabolising metallo-beta-lactamase [Shewanella denitrificans
OS217]
gi|91716642|gb|ABE56568.1| RNA-metabolising metallo-beta-lactamase [Shewanella denitrificans
OS217]
Length = 490
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH------VHHIDAVLLSYP 63
L T + + C+LL VD ++LLDCG + D EL+ H IDAV+LS+
Sbjct: 8 LGATQEVTGSCHLLTVDGQQLLLDCGLIQGGKAD---ELRNHDPFDFKPSQIDAVILSHA 64
Query: 64 DVAHLGALPYMVGKCGLSCPIF 85
+ H G LP +V K G + PI+
Sbjct: 65 HIDHSGRLPLLV-KQGFNGPIY 85
>gi|119576637|gb|EAW56233.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_b
[Homo sapiens]
Length = 329
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|441671688|ref|XP_004093259.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11
[Nomascus leucogenys]
Length = 585
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|20092670|ref|NP_618745.1| cleavage and polyadenylation specificity factor [Methanosarcina
acetivorans C2A]
gi|19917954|gb|AAM07225.1| cleavage and polyadenylation specificity factor [Methanosarcina
acetivorans C2A]
Length = 637
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHVHHIDAVL 59
+++T+L G + C+LL E +IL+DCG + M +V E+ ++ IDAV+
Sbjct: 181 VRVTALGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEV-FPLNQIDAVI 239
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+++ + H G +P + K G P++ T P + + D V
Sbjct: 240 VTHAHLDHQGLVPLLF-KYGYEGPVYCTPPTRDLMVLLQLDYIDV 283
>gi|21226797|ref|NP_632719.1| cleavage and polyadenylation specificity factor 100 kD subunit
[Methanosarcina mazei Go1]
gi|452209278|ref|YP_007489392.1| cleavage and polyadenylation specificity factor [Methanosarcina
mazei Tuc01]
gi|20905093|gb|AAM30391.1| cleavage and polyadenylation specificity factor 100 kD subunit
[Methanosarcina mazei Go1]
gi|452099180|gb|AGF96120.1| cleavage and polyadenylation specificity factor [Methanosarcina
mazei Tuc01]
Length = 637
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHVHHIDAVL 59
+++T+L G + C+LL E +IL+DCG + M +V E+ ++ IDAV+
Sbjct: 181 VRVTALGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEV-FPLNQIDAVI 239
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+++ + H G +P + K G P++ T P + + D V
Sbjct: 240 VTHAHLDHQGLVPLLF-KYGYEGPVYCTPPTRDLMVLLQLDYIDV 283
>gi|308198432|pdb|2XR1|A Chain A, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
gi|308198433|pdb|2XR1|B Chain B, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
Length = 640
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHVHHIDAVL 59
+++T+L G + C+LL E +IL+DCG + M +V E+ ++ IDAV+
Sbjct: 184 VRVTALGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEV-FPLNQIDAVI 242
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+++ + H G +P + K G P++ T P + + D V
Sbjct: 243 VTHAHLDHQGLVPLLF-KYGYEGPVYCTPPTRDLMVLLQLDYIDV 286
>gi|313675442|ref|YP_004053438.1| RNA-metabolising metallo-beta-lactamase [Marivirga tractuosa DSM
4126]
gi|312942140|gb|ADR21330.1| RNA-metabolising metallo-beta-lactamase [Marivirga tractuosa DSM
4126]
Length = 459
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 22/95 (23%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG------------WDEMFSMDFVKELKRHV 52
+++ L G + +LL++DE+KIL+DCG WDE F +D V
Sbjct: 3 VRVKFLGGAQSVTGSKFLLEIDEYKILIDCGLFQGLKALRLRNWDE-FPID--------V 53
Query: 53 HHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
IDA++L++ + H G +P MV K G +F T
Sbjct: 54 QEIDAIILTHAHLDHSGYVPRMV-KQGYKKNVFCT 87
>gi|118572558|sp|Q5NVE6.2|INT11_PONAB RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
Length = 600
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|426327390|ref|XP_004024501.1| PREDICTED: integrator complex subunit 11 isoform 1 [Gorilla gorilla
gorilla]
Length = 600
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|348551496|ref|XP_003461566.1| PREDICTED: integrator complex subunit 11 [Cavia porcellus]
Length = 600
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|14165488|gb|AAH08041.1| CPSF3L protein [Homo sapiens]
gi|18044933|gb|AAH20199.1| CPSF3L protein [Homo sapiens]
Length = 389
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|296206477|ref|XP_002750225.1| PREDICTED: integrator complex subunit 11 isoform 1 [Callithrix
jacchus]
Length = 600
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|119576641|gb|EAW56237.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_e
[Homo sapiens]
Length = 578
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|397476276|ref|XP_003809533.1| PREDICTED: integrator complex subunit 11 isoform 1 [Pan paniscus]
gi|410206788|gb|JAA00613.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410251172|gb|JAA13553.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410297680|gb|JAA27440.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410349815|gb|JAA41511.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
Length = 600
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|343958192|dbj|BAK62951.1| protein related to CPSF subunits 68 kDa [Pan troglodytes]
Length = 600
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|33300633|ref|NP_060341.2| integrator complex subunit 11 isoform 2 [Homo sapiens]
gi|118572557|sp|Q5TA45.2|INT11_HUMAN RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein; AltName: Full=Protein
related to CPSF subunits of 68 kDa; Short=RC-68
gi|14124912|gb|AAH07978.1| Cleavage and polyadenylation specific factor 3-like [Homo sapiens]
gi|60650138|tpg|DAA05669.1| TPA_exp: beta-lactamase fold protein family member RC-68 [Homo
sapiens]
gi|78100161|tpg|DAA05728.1| TPA_exp: integrator complex subunit 11 [Homo sapiens]
gi|119576636|gb|EAW56232.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Homo sapiens]
gi|119576638|gb|EAW56234.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Homo sapiens]
Length = 600
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|56403864|emb|CAI29717.1| hypothetical protein [Pongo abelii]
Length = 600
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|406875766|gb|EKD25500.1| Metallo-beta-lactamase, partial [uncultured bacterium (gcode 4)]
Length = 224
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVH------HIDAV 58
+ +T L + + C+L++ KILLDCG MF E K H + +DAV
Sbjct: 1 MNITFLGAAHEVTGSCHLVETKSEKILLDCG---MFQGGQFNEEKNHENFAFDPASLDAV 57
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++S+ + H G +P +V + G PI+ T ++ + D + +
Sbjct: 58 VVSHAHLDHTGRIPKLV-RDGFLGPIYGTDGTLELAALIWKDAYHI 102
>gi|386002906|ref|YP_005921205.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta harundinacea
6Ac]
gi|357210962|gb|AET65582.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta harundinacea
6Ac]
Length = 635
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHVHHIDAVL 59
+++T+L G + C LL E KI++DCG D +V E ++ IDAV+
Sbjct: 181 VRITTLGGCREVGRSCMLLSTPESKIIVDCGVNVGSDDSATPYLYVPE-AYPLNQIDAVV 239
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
L++ + H G +P M+ K G PI+ T P + + D +
Sbjct: 240 LTHAHLDHAGLVP-MLYKYGYEGPIYCTPPTRDLFVLLQLDYIDI 283
>gi|402852593|ref|XP_003891002.1| PREDICTED: integrator complex subunit 11 isoform 1 [Papio anubis]
gi|355557446|gb|EHH14226.1| hypothetical protein EGK_00111 [Macaca mulatta]
gi|387540112|gb|AFJ70683.1| integrator complex subunit 11 [Macaca mulatta]
Length = 600
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|343503644|ref|ZP_08741454.1| metallo-beta-lactamase family protein RNA-specific [Vibrio
ichthyoenteri ATCC 700023]
gi|342814436|gb|EGU49380.1| metallo-beta-lactamase family protein RNA-specific [Vibrio
ichthyoenteri ATCC 700023]
Length = 449
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVK--ELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
C+ L+VD+ IL+DCG +F + E++ + H+ A+LL++ + H+G LP+++ +
Sbjct: 16 CHELRVDDLAILIDCG---LFQGQDKRPLEIEFAIKHLQALLLTHAHIDHIGRLPWLLAQ 72
Query: 78 CGLSCPIFATIPVYKMGQMFMYDLFQVR 105
G PI+ T ++ + + D +++
Sbjct: 73 -GFKQPIYCTEATAELAPLMLEDSLKLQ 99
>gi|403297738|ref|XP_003939709.1| PREDICTED: integrator complex subunit 11 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 600
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|343958314|dbj|BAK63012.1| protein related to CPSF subunits 68 kDa [Pan troglodytes]
Length = 600
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|365874440|ref|ZP_09413973.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermanaerovibrio velox DSM 12556]
gi|363984527|gb|EHM10734.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermanaerovibrio velox DSM 12556]
Length = 533
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 20 CYLLQVDEFKILLDCGWDE-MFSMDFVKELKR-----HVHHIDAVLLSYPDVAHLGALPY 73
CYLL+ D++++L+DCG + D K K + +IDAVLL++ + H G +P
Sbjct: 16 CYLLETDDYRVLVDCGIHQGKDDEDLSKSSKGGYFPFNPANIDAVLLTHAHMDHSGLIP- 74
Query: 74 MVGKCGLSCPIFAT 87
++ K G P+FAT
Sbjct: 75 LLSKQGFKGPVFAT 88
>gi|198413502|ref|XP_002128796.1| PREDICTED: similar to cleavage and polyadenylation specific factor
3-like [Ciona intestinalis]
Length = 605
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS-------MDFVKELKRHV-HHID 56
IK+ L D C ++ + I+LDCG F+ D++ K + HID
Sbjct: 4 IKLVPLGAGQDVGRSCIIVTLGGKNIMLDCGMHMGFNDERRFPYFDYITGGKGTLTEHID 63
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPYM G PI+ T P + + + D ++ D
Sbjct: 64 CVIISHFHLDHCGALPYMSEMKGYDGPIYMTHPTKAICPILLEDYRKITVD 114
>gi|418936824|ref|ZP_13490510.1| RNA-metabolising metallo-beta-lactamase [Rhizobium sp. PDO1-076]
gi|375056472|gb|EHS52661.1| RNA-metabolising metallo-beta-lactamase [Rhizobium sp. PDO1-076]
Length = 530
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFV-KELKR-----HVHHIDA 57
I++ +G + S C+LL+ + ++L+DCG MF KEL H IDA
Sbjct: 6 ILRFHGAAGAVTGS--CHLLEWQDQRVLIDCG---MFQGSKTEKELNYRPFPFQPHRIDA 60
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
V+L++ + H G LP + K G PI+AT P + + + D
Sbjct: 61 VILTHAHIDHSGLLPKL-AKAGYEGPIYATQPTADLCSIMLPD 102
>gi|10435258|dbj|BAB14541.1| unnamed protein product [Homo sapiens]
Length = 278
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|168034228|ref|XP_001769615.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679157|gb|EDQ65608.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 563
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 14 MDESPPCYLLQVDEFKILLDCG-----WDEMFSMDF--VKELKRHVHHIDAVLLSYPDVA 66
D C ++ + I+ DCG DE DF + + H ID V++++ +
Sbjct: 6 QDVGKSCVIVTIGGKNIMFDCGMHMGYQDERRYPDFSFISKSGDFTHVIDCVIVTHFHLD 65
Query: 67 HLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
H+GALPY CG PI+ T P + + + D +V
Sbjct: 66 HIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKV 103
>gi|260060893|ref|YP_003193973.1| hypothetical protein RB2501_04830 [Robiginitalea biformata
HTCC2501]
gi|88785025|gb|EAR16194.1| hypothetical protein RB2501_04830 [Robiginitalea biformata
HTCC2501]
Length = 458
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 14/93 (15%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKR--------HVHHIDAVLLSYPDVAHLGALP 72
YLL + KIL+DCG +F +KEL+ +V IDAVLL++ + H G LP
Sbjct: 22 YLLDTGDRKILIDCG---LFQG--LKELRLKNWEYPPVNVTEIDAVLLTHGHLDHTGYLP 76
Query: 73 YMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
+V K G PI+ T P + ++ + D +++
Sbjct: 77 RLV-KQGFKGPIYGTYPTLDIAKIILNDSAKIQ 108
>gi|116753406|ref|YP_842524.1| beta-lactamase domain-containing protein [Methanosaeta thermophila
PT]
gi|116664857|gb|ABK13884.1| beta-lactamase domain protein [Methanosaeta thermophila PT]
Length = 635
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHVHHIDAVL 59
+++++L G + C LL E KI++DCG D +V E+ + IDAV+
Sbjct: 181 VRISTLGGCREVGRSCMLLSTPESKIIVDCGINVGSDDSATPYLYVPEV-YPLSQIDAVV 239
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
L++ + H G +P M+ K G PI+ T P + + D +V
Sbjct: 240 LTHAHLDHSGLVP-MLYKYGYEGPIYCTPPTRDLYVLLQLDYIEV 283
>gi|197099184|ref|NP_001124760.1| integrator complex subunit 11 [Pongo abelii]
gi|55725797|emb|CAH89679.1| hypothetical protein [Pongo abelii]
Length = 655
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|351697497|gb|EHB00416.1| Integrator complex subunit 11 [Heterocephalus glaber]
Length = 672
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 77 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 136
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 137 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 186
>gi|417403209|gb|JAA48422.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Desmodus rotundus]
Length = 604
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|313885018|ref|ZP_07818770.1| ribonuclease J 2 [Eremococcus coleocola ACS-139-V-Col8]
gi|312619709|gb|EFR31146.1| ribonuclease J 2 [Eremococcus coleocola ACS-139-V-Col8]
Length = 561
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
+K+ L G +E Y++++DE +LDCG DEM +D V L+ + +
Sbjct: 4 VKIIPLGGVREEGKNMYVVEIDEAIYVLDCGLVFPEDEMLGIDAVIPDFTYLEENKERVV 63
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ LS+ +GALPY++ L P+F T
Sbjct: 64 GIFLSHGHADAMGALPYLLDT--LEAPVFGT 92
>gi|291238246|ref|XP_002739041.1| PREDICTED: cleavage and polyadenylation specific factor 3-like
[Saccoglossus kowalevskii]
Length = 573
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
IK+ L D C L+ + I+ DCG DE DF + H+D
Sbjct: 4 IKVVPLGAGQDVGRSCVLVSIGGKNIMFDCGMHMGYNDERRFPDFSYITRAGTLTEHLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H G+LP+M G PI+ TIP + + + D ++
Sbjct: 64 VIISHFHLDHCGSLPHMSEMIGFDGPIYMTIPTKAICPILLEDYRKI 110
>gi|225387597|ref|ZP_03757361.1| hypothetical protein CLOSTASPAR_01362 [Clostridium asparagiforme
DSM 15981]
gi|225046309|gb|EEG56555.1| hypothetical protein CLOSTASPAR_01362 [Clostridium asparagiforme
DSM 15981]
Length = 461
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG--WDEMFSMDFV-KELKRHVH-HIDAVLL 60
I +TSL G+ +E+ C+LL+ +LLDCG + + ++D V L R + + AV L
Sbjct: 21 IAVTSLGGSGEEARNCFLLEAGNHAVLLDCGVRREALGALDHVYPALTREIAGRLTAVFL 80
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
S+ H+ ALPY+ + G ++ T ++ FM
Sbjct: 81 SHAHEDHVAALPYLY-ELGYRGNVYGTEETIRLAGGFM 117
>gi|417403203|gb|JAA48419.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Desmodus rotundus]
Length = 603
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|255513745|gb|EET90010.1| beta-lactamase domain protein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 655
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 16/111 (14%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG---------------WDEMFSMDFVKELK 49
+K T+L G + C LL+ KI++DCG + + ++
Sbjct: 190 LKATALGGFREVGRSCLLLETPNSKIIIDCGISPEPGIKGLDANANQEGNKAFPYIDSAN 249
Query: 50 RHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
++ IDAV+L++ + H+G +PY+ K G P++ T P + + + D
Sbjct: 250 ISINEIDAVILTHGHMDHMGFVPYLF-KYGYEGPVYCTPPTRDLAALLLTD 299
>gi|410989914|ref|XP_004001198.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11
[Felis catus]
Length = 598
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|343509892|ref|ZP_08747154.1| metallo-beta-lactamase family protein RNA-specific [Vibrio
scophthalmi LMG 19158]
gi|342803689|gb|EGU39039.1| metallo-beta-lactamase family protein RNA-specific [Vibrio
scophthalmi LMG 19158]
Length = 452
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVK--ELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
C+ LQVD IL+DCG +F + E++ H+ A+LL++ + H+G LP+++ K
Sbjct: 16 CHELQVDGQAILVDCG---LFQGQDKRPLEVEFATQHLQALLLTHAHIDHIGRLPWLLAK 72
Query: 78 CGLSCPIFATIPVYKMGQMFMYDLFQVR 105
G PI+ T +M + + D +++
Sbjct: 73 -GFKQPIYCTEATAEMVPLMLEDSLKLQ 99
>gi|225849395|ref|YP_002729559.1| metallo-beta-lactamase family protein [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225643204|gb|ACN98254.1| metallo-beta-lactamase family protein [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 463
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 9 SLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKE-LKRHVHHIDAVLLSYPDVAH 67
S G+ + C+L++VD IL+DCG + D E + ID ++L++ + H
Sbjct: 5 SFGGSEGVTGSCHLVKVDHMNILIDCGMFQGLDEDKNYEPFGFNPKEIDYLILTHAHIDH 64
Query: 68 LGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
G +P +V K G I +T P Y + ++ + D +V
Sbjct: 65 CGRIPLLV-KQGFRGKIISTRPTYAVARIMLLDAAKV 100
>gi|424811901|ref|ZP_18237141.1| putative metal-dependent Rnase [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756123|gb|EGQ39706.1| putative metal-dependent Rnase [Candidatus Nanosalinarum sp.
J07AB56]
Length = 619
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD---EMFSMDFVKEL---KRHVHHIDAV 58
++++SL G C L+Q + +LLDCG D E S + L + + +DAV
Sbjct: 169 VRVSSLGGFRQVGRSCVLVQSETSNVLLDCGIDPSAEEGSRNNFPHLDAPELDIPALDAV 228
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
+LS+ + H+G +PY+ + G P++ T P + M D + +
Sbjct: 229 VLSHAHMDHMGMIPYLY-RMGYDGPLYCTAPTRDLMIMQTLDYIDISH 275
>gi|392988736|ref|YP_006487329.1| metallo-beta-lactamase superfamily protein [Enterococcus hirae
ATCC 9790]
gi|392336156|gb|AFM70438.1| metallo-beta-lactamase superfamily protein [Enterococcus hirae
ATCC 9790]
Length = 559
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V E +LDCG +E+ +D V L+ ++
Sbjct: 2 STIKIIPLGGVRENGKNMYIAEVGEDIFVLDCGLKYPENELLGIDVVIPDFTYLEENIDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V L++ +GALPY++ K LS P+F T
Sbjct: 62 VAGVFLTHGHADAIGALPYLLSK--LSVPVFGT 92
>gi|340509302|gb|EGR34852.1| hypothetical protein IMG5_000800 [Ichthyophthirius multifiliis]
Length = 280
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
Query: 14 MDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVH---HIDAVLLSYPDVAHLGA 70
+D + L+ + ILLDCG ++ MDF ++++H +ID +LLS+ GA
Sbjct: 13 IDGATSTLLIFDQDIHILLDCGLNQ--KMDFT-NYQKNIHLLKNIDLILLSHSGSEFTGA 69
Query: 71 LPYM-----VGKCGLSCPIFATIPVYKMGQMFMYDLF 102
LP++ + + G S I+ T P+ K+G + ++ F
Sbjct: 70 LPFILSNQQIQQQGKSIQIYTTTPIIKLGLINSFNQF 106
>gi|61098197|ref|NP_001012854.1| integrator complex subunit 11 [Gallus gallus]
gi|75571225|sp|Q5ZIH0.1|INT11_CHICK RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|53135966|emb|CAG32473.1| hypothetical protein RCJMB04_26e19 [Gallus gallus]
Length = 600
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
IK+T L D C L+ + ++LDCG ++ D ++ + R +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVD 113
>gi|149024842|gb|EDL81339.1| similar to RIKEN cDNA 2410006F12 [Rattus norvegicus]
Length = 601
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG ++ D ++ + R +D
Sbjct: 5 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 64
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 65 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 114
>gi|74220481|dbj|BAE31460.1| unnamed protein product [Mus musculus]
Length = 600
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG ++ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|449268484|gb|EMC79348.1| Integrator complex subunit 11 [Columba livia]
Length = 600
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
IK+T L D C L+ + ++LDCG ++ D ++ + R +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVD 113
>gi|417788211|ref|ZP_12435894.1| Zn-dependent hydrolase [Lactobacillus salivarius NIAS840]
gi|334308388|gb|EGL99374.1| Zn-dependent hydrolase [Lactobacillus salivarius NIAS840]
Length = 565
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ SL G + + Y ++VD+ +LDCG +E+ +DFV L+ +
Sbjct: 2 SDIKIISLGGVRENAKNMYAVEVDDEIFILDCGLKYPENELLGIDFVIPDFSYLRENSRE 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY V + P+F +
Sbjct: 62 IVGVFLTHGHADAIGALPYFVSE--FDVPVFGS 92
>gi|331086151|ref|ZP_08335233.1| hypothetical protein HMPREF0987_01536 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406310|gb|EGG85824.1| hypothetical protein HMPREF0987_01536 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 536
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+K+T + + + C+LL+V+ IL+DCG ++ + +E+ V ID VLL++
Sbjct: 1 MKLTFIGAAHEVTGSCHLLEVNGKHILIDCGMEQGPDLYENQEIPVAVGEIDYVLLTHAH 60
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ H G +P ++ K G I T + Q+ + D
Sbjct: 61 IDHSGLIP-LLAKRGFQGQIVTTFATADLCQIMLRD 95
>gi|325662348|ref|ZP_08150957.1| hypothetical protein HMPREF0490_01696 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471350|gb|EGC74573.1| hypothetical protein HMPREF0490_01696 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 536
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+K+T + + + C+LL+V+ IL+DCG ++ + +E+ V ID VLL++
Sbjct: 1 MKLTFIGAAHEVTGSCHLLEVNGKHILIDCGMEQGPDLYENQEIPVAVGEIDYVLLTHAH 60
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ H G +P ++ K G I T + Q+ + D
Sbjct: 61 IDHSGLIP-LLAKRGFQGQIVTTFATADLCQIMLRD 95
>gi|21312614|ref|NP_082296.1| integrator complex subunit 11 [Mus musculus]
gi|81904239|sp|Q9CWS4.1|INT11_MOUSE RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|12845859|dbj|BAB26928.1| unnamed protein product [Mus musculus]
gi|26355309|dbj|BAC41135.1| unnamed protein product [Mus musculus]
gi|74192536|dbj|BAE43054.1| unnamed protein product [Mus musculus]
gi|74219576|dbj|BAE29558.1| unnamed protein product [Mus musculus]
gi|148683102|gb|EDL15049.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_b
[Mus musculus]
Length = 600
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG ++ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|76559911|ref|NP_001029064.1| integrator complex subunit 11 [Rattus norvegicus]
gi|119371245|sp|Q3MHC2.1|INT11_RAT RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|75867808|gb|AAI05304.1| Cleavage and polyadenylation specific factor 3-like [Rattus
norvegicus]
Length = 600
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG ++ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|354495797|ref|XP_003510015.1| PREDICTED: integrator complex subunit 11-like [Cricetulus griseus]
gi|344251677|gb|EGW07781.1| Integrator complex subunit 11 [Cricetulus griseus]
Length = 600
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG ++ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|326932364|ref|XP_003212289.1| PREDICTED: integrator complex subunit 11-like [Meleagris gallopavo]
Length = 600
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
IK+T L D C L+ + ++LDCG ++ D ++ + R +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVD 113
>gi|15029864|gb|AAH11155.1| Cleavage and polyadenylation specific factor 3-like [Mus musculus]
Length = 600
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG ++ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|74198351|dbj|BAE39661.1| unnamed protein product [Mus musculus]
Length = 600
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG ++ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|431922648|gb|ELK19568.1| Integrator complex subunit 11 [Pteropus alecto]
Length = 603
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|281201684|gb|EFA75892.1| integrator complex subunit 11 [Polysphondylium pallidum PN500]
Length = 648
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 18/128 (14%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
IK+ L D C ++ + I+ DCG DE DF + + K+ +D
Sbjct: 3 IKVVPLGAGQDVGRSCVIVSIGNKNIMFDCGMHMGYHDERRFPDFSFISKTKQFTKVLDC 62
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFAT--------IPVYKMGQ---MFMYDLFQVRY 106
V++++ + H GALPY CG PI+ T I +YK FM L Q+
Sbjct: 63 VIITHFHLDHCGALPYFTEICGYDGPIYMTVCYKCLISISIYKYNYNSLTFMLQLIQLPT 122
Query: 107 DTFLKLLL 114
+ +LL
Sbjct: 123 KAIVPILL 130
>gi|301788922|ref|XP_002929872.1| PREDICTED: integrator complex subunit 11-like [Ailuropoda
melanoleuca]
Length = 600
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|359319514|ref|XP_003639102.1| PREDICTED: integrator complex subunit 11-like [Canis lupus
familiaris]
Length = 600
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>gi|90961617|ref|YP_535533.1| metallo-beta-lactamase superfamily protein [Lactobacillus
salivarius UCC118]
gi|227890704|ref|ZP_04008509.1| metallo-beta-lactamase superfamily hydrolase [Lactobacillus
salivarius ATCC 11741]
gi|385840307|ref|YP_005863631.1| Metallo-beta-lactamase superfamily protein [Lactobacillus
salivarius CECT 5713]
gi|90820811|gb|ABD99450.1| Metallo-beta-lactamase superfamily protein [Lactobacillus
salivarius UCC118]
gi|227867642|gb|EEJ75063.1| metallo-beta-lactamase superfamily hydrolase [Lactobacillus
salivarius ATCC 11741]
gi|300214428|gb|ADJ78844.1| Metallo-beta-lactamase superfamily protein [Lactobacillus
salivarius CECT 5713]
Length = 565
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ SL G + + Y ++VD+ +LDCG +E+ +DFV L+ +
Sbjct: 2 SDIKIISLGGVRENAKNMYAVEVDDEIFILDCGLKYPENELLGIDFVIPDFSYLRENSRK 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY V + P+F +
Sbjct: 62 IVGVFLTHGHADAIGALPYFVSE--FDVPVFGS 92
>gi|418961248|ref|ZP_13513135.1| metallo-beta-lactamase superfamily protein [Lactobacillus
salivarius SMXD51]
gi|380344915|gb|EIA33261.1| metallo-beta-lactamase superfamily protein [Lactobacillus
salivarius SMXD51]
Length = 565
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ SL G + + Y ++VD+ +LDCG +E+ +DFV L+ +
Sbjct: 2 SDIKIISLGGVRENAKNMYAVEVDDEIFILDCGLKYPENELLGIDFVIPDFSYLRENSRK 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY V + P+F +
Sbjct: 62 IVGVFLTHGHADAIGALPYFVSE--FDVPVFGS 92
>gi|417810395|ref|ZP_12457074.1| metallo-beta-lactamase superfamily protein [Lactobacillus
salivarius GJ-24]
gi|335349191|gb|EGM50691.1| metallo-beta-lactamase superfamily protein [Lactobacillus
salivarius GJ-24]
Length = 565
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ SL G + + Y ++VD+ +LDCG +E+ +DFV L+ +
Sbjct: 2 SDIKIISLGGVRENAKNMYAVEVDDEIFILDCGLKYPENELLGIDFVIPDFSYLRENSRK 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY V + P+F +
Sbjct: 62 IVGVFLTHGHADAIGALPYFVSE--FDVPVFGS 92
>gi|326799928|ref|YP_004317747.1| beta-lactamase [Sphingobacterium sp. 21]
gi|326550692|gb|ADZ79077.1| beta-lactamase domain protein [Sphingobacterium sp. 21]
Length = 462
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 21 YLLQVDEFKILLDCG--WDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKC 78
+LL+++ +KIL+DCG ++ S++ + H ID ++L++ + H G +P ++ +
Sbjct: 17 HLLEIEGYKILIDCGLNYEPSVSLEDNEHFPFHPSEIDVLILTHAHIDHSGNIPTLI-RS 75
Query: 79 GLSCPIFATIPVYKMGQMFMYD 100
G I +T P + ++ M D
Sbjct: 76 GFQGQILSTSPTAALSELLMLD 97
>gi|301299250|ref|ZP_07205536.1| putative Ribonuclease J 2 [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300853094|gb|EFK80692.1| putative Ribonuclease J 2 [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 565
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ SL G + + Y ++VD+ +LDCG +E+ +DFV L+ +
Sbjct: 2 SDIKIISLGGVRENAKNMYAVEVDDEIFILDCGLKYPENELLGIDFVIPDFSYLRENSRK 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY V + P+F +
Sbjct: 62 IVGVFLTHGHADAIGALPYFVSE--FDVPVFGS 92
>gi|407774729|ref|ZP_11122026.1| metallo-beta-lactamase [Thalassospira profundimaris WP0211]
gi|407282211|gb|EKF07770.1| metallo-beta-lactamase [Thalassospira profundimaris WP0211]
Length = 524
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 20 CYLLQVDEFKILLDCGWDEMFS-MDFVKELKR-----HVHHIDAVLLSYPDVAHLGALPY 73
CY LQ D L+DCG MF V+EL I AVLL++ + H G +P
Sbjct: 18 CYFLQTDRGNFLVDCG---MFQGSKTVRELNYGKFPFEADRISAVLLTHAHIDHTGLVPK 74
Query: 74 MVGKCGLSCPIFATIP 89
+V K G PI+AT P
Sbjct: 75 LV-KAGFGGPIYATEP 89
>gi|284161558|ref|YP_003400181.1| RNA-metabolising metallo-beta-lactamase [Archaeoglobus profundus
DSM 5631]
gi|284011555|gb|ADB57508.1| RNA-metabolising metallo-beta-lactamase [Archaeoglobus profundus
DSM 5631]
Length = 631
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD---FVKELKRHVHHIDAVLLS 61
+++T L G + CYLLQ KIL++CG + + ++ E++ + IDAV+++
Sbjct: 178 VRVTFLGGAREVGRSCYLLQTPNSKILVECGINVSGNQPPYLYIPEIQP-LDSIDAVVIT 236
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ + H G +P + K G P++ T P + + D +V
Sbjct: 237 HAHLDHCGLVPVLF-KYGYRGPVYLTPPTRDLMVLLQLDFIEV 278
>gi|393794892|ref|ZP_10378256.1| beta-lactamase domain-containing protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 658
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCG--------WDEMFSMDFVKELKRHVHH 54
S + + +L G C LL E KIL+DCG D +DF L +
Sbjct: 199 SEVSLITLGGFSQVGRSCMLLSTPESKILVDCGINPGAKHPMDSFPRLDF---LDITLDE 255
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+DAV++ + + H G LP + K G PI+ T P M + D +V
Sbjct: 256 LDAVVIGHAHLDHTGFLPALC-KFGYKGPIYCTEPTLPMMNLIQLDAIKV 304
>gi|329766104|ref|ZP_08257663.1| beta-lactamase domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137375|gb|EGG41652.1| beta-lactamase domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 645
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCG--------WDEMFSMDFVKELKRHVHH 54
S + + +L G C LL E KIL+DCG D +DF L +
Sbjct: 186 SEVSLITLGGFSQVGRSCMLLSTPESKILVDCGINPGAKHPMDSFPRLDF---LDITLDE 242
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+DAV++ + + H G LP + K G PI+ T P M + D +V
Sbjct: 243 LDAVVIGHAHLDHTGFLPALC-KFGYKGPIYCTEPTLPMMNLIQLDAIKV 291
>gi|118572556|sp|Q2YDM2.2|INT11_BOVIN RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|158455110|gb|AAI10156.2| CPSF3L protein [Bos taurus]
Length = 599
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG FS D + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYNTRSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVD 113
>gi|341903207|gb|EGT59142.1| hypothetical protein CAEBREN_31222 [Caenorhabditis brenneri]
Length = 571
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW------DEMF-SMDFVKELKRHVHHIDA 57
+K+ L D C L+ + +++DCG D F ++ R ++D
Sbjct: 11 LKIVPLGAGQDVGRSCILITIGGKNVMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDC 70
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H G+LP+M G PI+ T P + Q+ + D +V+ D
Sbjct: 71 VIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAIAQVLLEDYRKVQCD 120
>gi|288561234|ref|YP_003424720.1| RNA-metabolising metallo-beta-lactamase [Methanobrevibacter
ruminantium M1]
gi|288543944|gb|ADC47828.1| RNA-metabolising metallo-beta-lactamase [Methanobrevibacter
ruminantium M1]
Length = 636
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDC-----GWDEMFSMDFVKELKRHVHHIDAVL 59
+++T++ G + C LLQ ++LLDC G D+ S + + + +DAV+
Sbjct: 180 VRLTAMGGFKEVGRSCMLLQTPNSRVLLDCGVNVAGQDDKTSFPMLGVPEFSIQDLDAVV 239
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
LS+ + H G +PY+ G P++ T + + D + +
Sbjct: 240 LSHAHLDHCGFIPYLY-HYGYEGPVYCTSATRDLMTLLQMDYIDIAH 285
>gi|326426580|gb|EGD72150.1| cleavage and polyadenylation specificity factor subunit 3
[Salpingoeca sp. ATCC 50818]
Length = 790
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMF----SMDFVKELKRHVHHIDAV 58
+++ +T L + C++L+ F I+LDCG S+ FV +++ ++ ID V
Sbjct: 49 NVLTITPLGAGQEVGRSCHILKFKGFTIMLDCGIHPGLKGKASLPFVSQIE--LNKIDLV 106
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
L+++ + H GALP+++ + S +F T + + + D +V + + +LE
Sbjct: 107 LITHFHLDHCGALPWLLERSTFSGRVFMTPATKAIYRWILEDYVRVSNISNFAEMYSLE 165
>gi|157377290|ref|YP_001475890.1| aspartate kinase [Shewanella sediminis HAW-EB3]
gi|157319664|gb|ABV38762.1| aspartate kinase [Shewanella sediminis HAW-EB3]
Length = 478
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHV------HHIDAVLLSYP 63
L T + + C+LL+VD ++LLDCG + D +L+ H I AV+LS+
Sbjct: 6 LGATQEVTGSCHLLEVDGQQLLLDCGLIQGGKAD---QLRNHEPFLFEPKVIAAVVLSHA 62
Query: 64 DVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ H G LP +V K G S PIF ++ + + D
Sbjct: 63 HIDHSGRLPLLV-KSGFSGPIFTHKATAELCAIMLKD 98
>gi|344943337|ref|ZP_08782624.1| RNA-metabolising metallo-beta-lactamase [Methylobacter
tundripaludum SV96]
gi|344260624|gb|EGW20896.1| RNA-metabolising metallo-beta-lactamase [Methylobacter
tundripaludum SV96]
Length = 466
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHH------IDA 57
+ +T L T + CYLL+ +ILLDCG +F E + IDA
Sbjct: 1 MTNLTFLGATGQVTGSCYLLETGSSRILLDCG---LFQGSRETEKQNEAEFPFDPAGIDA 57
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
V+LS+ + H G LP + K G P+F T + + ++ + D
Sbjct: 58 VVLSHAHLDHCGRLPKL-AKDGFKGPVFLTEASFPLLELMLMD 99
>gi|223997482|ref|XP_002288414.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975522|gb|EED93850.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 557
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDC----GWDEMFSMDFVKELKRHVHHID 56
M I+ +T L + C+LL ILLDC G+D M + F + +D
Sbjct: 1 MEDIMTITPLGSGQEVGRSCHLLTFRSTTILLDCGIHPGYDGMAGLPFFDRVDP--EQVD 58
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+L+++ + H +LPY + G IF T P + ++ + D ++
Sbjct: 59 VLLITHFHLDHAASLPYFTERTGFKGRIFMTHPTKAVIRLLLGDYLKL 106
>gi|168702845|ref|ZP_02735122.1| hypothetical protein GobsU_25171 [Gemmata obscuriglobus UQM 2246]
Length = 476
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKE---LKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
+L++ KILLDCG + + + H H IDAV++S+ + H G LP ++ +
Sbjct: 30 HLIETGNHKILLDCGLHQGRREEARQRNGHFPFHAHQIDAVIVSHAHIDHCGNLPTLI-R 88
Query: 78 CGLSCPIFATIPVYKMGQMFMYDLFQVR 105
G PI+ T P + ++ + D +++
Sbjct: 89 QGFDGPIYCTPPTRDLLRVMLADSAKIQ 116
>gi|379005388|ref|YP_005261060.1| universal KH-domain/beta-lactamase-domain protein [Pyrobaculum
oguniense TE7]
gi|375160841|gb|AFA40453.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Pyrobaculum oguniense TE7]
Length = 635
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFSMDFVKELKRHVHHIDAVL 59
I + L M+ L+ E +LLDCG +DE F M + ++ R +DAV+
Sbjct: 175 ITVAFLGAAMEVGRSAILVSTTESNVLLDCGLKPSQYDEDFPMLDLVDIDR----LDAVV 230
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
L++ + H+G LP++ K G P++ T P + + D +++
Sbjct: 231 LTHAHMDHVGCLPFLF-KYGYKGPVYMTDPTKYQAFILLTDYVELK 275
>gi|377809577|ref|YP_005004798.1| RNA-metabolising metallo-beta-lactamase family protein [Pediococcus
claussenii ATCC BAA-344]
gi|361056318|gb|AEV95122.1| RNA-metabolising metallo-beta-lactamase family protein [Pediococcus
claussenii ATCC BAA-344]
Length = 569
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 18/120 (15%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHV 52
M+S IK+ G + Y +QVDE +LDCG +E+ +D V L H
Sbjct: 1 MSSSIKIIPFGGVRENGKNMYAVQVDEDIYILDCGLKYPENELLGIDIVIPDFSYLSEHK 60
Query: 53 HHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIF--------ATIPVYKMGQMFMYDLFQV 104
I V L++ +GALPY + + P+F A I + ++ YD F +
Sbjct: 61 DQIVGVFLTHGHADAIGALPYFLKE--FDVPVFGSKLTIELAKITISGETELKSYDQFHI 118
>gi|315426611|dbj|BAJ48239.1| beta-lactamase domain protein [Candidatus Caldiarchaeum
subterraneum]
Length = 635
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDE--MFSMDFVKE---LKRHVHHIDAVL 59
+++T L C L+Q E ++LDCG S+ F + V +DAV+
Sbjct: 179 VRITVLGAGRQVGRSCILIQTSESTVMLDCGLSAGATSSLSFYPRFDAIPNLVEELDAVV 238
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
LS+ + H+G +PY+ K G P++A P + + + D V
Sbjct: 239 LSHAHLDHVGLVPYLF-KYGYRGPVYAVEPTLPLMALEVTDYVSV 282
>gi|315426553|dbj|BAJ48183.1| beta-lactamase domain protein [Candidatus Caldiarchaeum
subterraneum]
gi|343485301|dbj|BAJ50955.1| beta-lactamase domain protein [Candidatus Caldiarchaeum
subterraneum]
Length = 635
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDE--MFSMDFVKE---LKRHVHHIDAVL 59
+++T L C L+Q E ++LDCG S+ F + V +DAV+
Sbjct: 179 VRITVLGAGRQVGRSCILIQTSESTVMLDCGLSAGATSSLSFYPRFDAIPNLVEELDAVV 238
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
LS+ + H+G +PY+ K G P++A P + + + D V
Sbjct: 239 LSHAHLDHVGLVPYLF-KYGYRGPVYAVEPTLPLMALEVTDYVSV 282
>gi|315425373|dbj|BAJ47039.1| mRNA 3'-end processing factor [Candidatus Caldiarchaeum
subterraneum]
Length = 638
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDE--MFSMDFVKE---LKRHVHHIDAVL 59
+++T L C L+Q E ++LDCG S+ F + V +DAV+
Sbjct: 182 VRITVLGAGRQVGRSCILIQTSESTVMLDCGLSAGATSSLSFYPRFDAIPNLVEELDAVV 241
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
LS+ + H+G +PY+ K G P++A P + + + D V
Sbjct: 242 LSHAHLDHVGLVPYLF-KYGYRGPVYAVEPTLPLMALEVTDYVSV 285
>gi|167525469|ref|XP_001747069.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774364|gb|EDQ87993.1| predicted protein [Monosiga brevicollis MX1]
Length = 730
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHV-HHIDAV 58
I++ L D C L+ + I+ DCG D DF + + + HID
Sbjct: 10 IRVVPLGAGQDVGRSCVLVTMGGRTIMFDCGMHMGYNDARRFPDFTQVAQGPLTDHIDLA 69
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
++++ + H GALPY + G P++ T+P + Q+ + D
Sbjct: 70 IITHFHLDHCGALPYFTEQVGYDGPLYMTMPTRAIAQVLLED 111
>gi|160939118|ref|ZP_02086469.1| hypothetical protein CLOBOL_04012 [Clostridium bolteae ATCC
BAA-613]
gi|158438081|gb|EDP15841.1| hypothetical protein CLOBOL_04012 [Clostridium bolteae ATCC
BAA-613]
Length = 535
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+++T + + + C+ L+V K+L+DCG ++ ++ EL H ID VLL++
Sbjct: 3 MRLTFIGADHEVTGSCHFLEVGNTKVLIDCGMEQGNNIYQNAELPVGYHEIDYVLLTHAH 62
Query: 65 VAHLGALPYM 74
+ H G LP++
Sbjct: 63 IDHAGMLPWI 72
>gi|268530366|ref|XP_002630309.1| Hypothetical protein CBG00745 [Caenorhabditis briggsae]
Length = 637
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
IK+ L D C L+ + I++DCG + D ++ R ++D
Sbjct: 34 IKIVPLGAGQDVGRSCILITIGTKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDC 93
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H G+LP+M G PI+ T P + + + D +V+ D
Sbjct: 94 VIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCD 143
>gi|282165070|ref|YP_003357455.1| hypothetical protein MCP_2400 [Methanocella paludicola SANAE]
gi|282157384|dbj|BAI62472.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 636
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-----FVKELKRHVHHIDAVL 59
I++T+L G + +LL E +IL+DCG + +V E+ + +IDAV+
Sbjct: 181 IRITTLGGCKEVGRSSFLLSTPETRILIDCGVSTGAEANGTPYLYVPEVSP-LSNIDAVV 239
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
L++ + H G +P ++ K G P++ T P + + D +V
Sbjct: 240 LTHAHLDHCGMIP-LLYKYGYEGPVYMTPPTRDLMALLQLDYIEV 283
>gi|431453580|ref|ZP_19514103.1| metallo-beta-lactamase [Enterococcus faecium E1630]
gi|431760737|ref|ZP_19549332.1| metallo-beta-lactamase [Enterococcus faecium E3346]
gi|430584922|gb|ELB23232.1| metallo-beta-lactamase [Enterococcus faecium E1630]
gi|430623468|gb|ELB60157.1| metallo-beta-lactamase [Enterococcus faecium E3346]
Length = 559
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V E +LDCG +E+ +D V L+ ++
Sbjct: 2 STIKIIPLGGVRENGKNMYVAEVGEDIFILDCGLKYPENELLGIDVVIPDFTYLEENIDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V L++ +GALPY++ K +S P+F T
Sbjct: 62 VAGVFLTHGHADAIGALPYLLSK--ISVPVFGT 92
>gi|430863787|ref|ZP_19480232.1| metallo-beta-lactamase [Enterococcus faecium E1573]
gi|430547847|gb|ELA87761.1| metallo-beta-lactamase [Enterococcus faecium E1573]
Length = 559
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V E +LDCG +E+ +D V L+ ++
Sbjct: 2 STIKIIPLGGVRENGKNMYVAEVGEDIFILDCGLKYPENELLGIDVVIPDFTYLEENIDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V L++ +GALPY++ K +S P+F T
Sbjct: 62 VAGVFLTHGHADAIGALPYLLSK--ISVPVFGT 92
>gi|430820511|ref|ZP_19439140.1| metallo-beta-lactamase [Enterococcus faecium E0045]
gi|430439469|gb|ELA49817.1| metallo-beta-lactamase [Enterococcus faecium E0045]
Length = 559
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V E +LDCG +E+ +D V L+ ++
Sbjct: 2 STIKIIPLGGVRENGKNMYVAEVGEDIFILDCGLKYPENELLGIDVVIPDFTYLEENIDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V L++ +GALPY++ K +S P+F T
Sbjct: 62 VAGVFLTHGHADAIGALPYLLSK--ISVPVFGT 92
>gi|427395560|ref|ZP_18888482.1| hypothetical protein HMPREF9307_00658 [Enterococcus durans
FB129-CNAB-4]
gi|430962035|ref|ZP_19487318.1| metallo-beta-lactamase [Enterococcus faecium E1576]
gi|431012198|ref|ZP_19489989.1| metallo-beta-lactamase [Enterococcus faecium E1578]
gi|431259982|ref|ZP_19505488.1| metallo-beta-lactamase [Enterococcus faecium E1623]
gi|425723549|gb|EKU86436.1| hypothetical protein HMPREF9307_00658 [Enterococcus durans
FB129-CNAB-4]
gi|430555945|gb|ELA95473.1| metallo-beta-lactamase [Enterococcus faecium E1576]
gi|430559709|gb|ELA99033.1| metallo-beta-lactamase [Enterococcus faecium E1578]
gi|430576721|gb|ELB15346.1| metallo-beta-lactamase [Enterococcus faecium E1623]
Length = 559
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V E +LDCG +E+ +D V L+ ++
Sbjct: 2 STIKIIPLGGVRENGKNMYVAEVGEDIFILDCGLKYPENELLGIDVVIPDFTYLEENIDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V L++ +GALPY++ K +S P+F T
Sbjct: 62 VAGVFLTHGHADAIGALPYLLSK--ISVPVFGT 92
>gi|425056929|ref|ZP_18460366.1| hypothetical protein HMPREF1347_00251 [Enterococcus faecium 504]
gi|403041357|gb|EJY52377.1| hypothetical protein HMPREF1347_00251 [Enterococcus faecium 504]
Length = 562
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V E +LDCG +E+ +D V L+ ++
Sbjct: 5 STIKIIPLGGVRENGKNMYVAEVGEDIFILDCGLKYPENELLGIDVVIPDFTYLEENIDR 64
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V L++ +GALPY++ K +S P+F T
Sbjct: 65 VAGVFLTHGHADAIGALPYLLSK--ISVPVFGT 95
>gi|425055468|ref|ZP_18458942.1| hypothetical protein HMPREF1348_01497 [Enterococcus faecium 505]
gi|403033900|gb|EJY45383.1| hypothetical protein HMPREF1348_01497 [Enterococcus faecium 505]
Length = 562
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V E +LDCG +E+ +D V L+ ++
Sbjct: 5 STIKIIPLGGVRENGKNMYVAEVGEDIFILDCGLKYPENELLGIDVVIPDFTYLEENIDR 64
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V L++ +GALPY++ K +S P+F T
Sbjct: 65 VAGVFLTHGHADAIGALPYLLSK--ISVPVFGT 95
>gi|293571154|ref|ZP_06682192.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
E980]
gi|430840577|ref|ZP_19458501.1| metallo-beta-lactamase [Enterococcus faecium E1007]
gi|431738421|ref|ZP_19527365.1| metallo-beta-lactamase [Enterococcus faecium E1972]
gi|431741725|ref|ZP_19530627.1| metallo-beta-lactamase [Enterococcus faecium E2039]
gi|291608767|gb|EFF38051.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
E980]
gi|430495064|gb|ELA71280.1| metallo-beta-lactamase [Enterococcus faecium E1007]
gi|430597518|gb|ELB35314.1| metallo-beta-lactamase [Enterococcus faecium E1972]
gi|430601227|gb|ELB38837.1| metallo-beta-lactamase [Enterococcus faecium E2039]
Length = 559
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V E +LDCG +E+ +D V L+ ++
Sbjct: 2 STIKIIPLGGVRENGKNMYVAEVGEDIFILDCGLKYPENELLGIDVVIPDFTYLEENIDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V L++ +GALPY++ K +S P+F T
Sbjct: 62 VAGVFLTHGHADAIGALPYLLSK--ISVPVFGT 92
>gi|293552924|ref|ZP_06673579.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
E1039]
gi|291602900|gb|EFF33097.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
E1039]
Length = 559
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V E +LDCG +E+ +D V L+ ++
Sbjct: 2 STIKIIPLGGVRENGKNMYVAEVGEDIFILDCGLKYPENELLGIDVVIPDFTYLEENIDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V L++ +GALPY++ K +S P+F T
Sbjct: 62 VAGVFLTHGHADAIGALPYLLSK--ISVPVFGT 92
>gi|294617806|ref|ZP_06697418.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
E1679]
gi|430823917|ref|ZP_19442486.1| metallo-beta-lactamase [Enterococcus faecium E0120]
gi|430866998|ref|ZP_19482224.1| metallo-beta-lactamase [Enterococcus faecium E1574]
gi|431381607|ref|ZP_19511209.1| metallo-beta-lactamase [Enterococcus faecium E1627]
gi|431517014|ref|ZP_19516404.1| metallo-beta-lactamase [Enterococcus faecium E1634]
gi|431685103|ref|ZP_19524652.1| metallo-beta-lactamase [Enterococcus faecium E1904]
gi|431744677|ref|ZP_19533545.1| metallo-beta-lactamase [Enterococcus faecium E2071]
gi|291595917|gb|EFF27198.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
E1679]
gi|430441950|gb|ELA52021.1| metallo-beta-lactamase [Enterococcus faecium E0120]
gi|430551048|gb|ELA90818.1| metallo-beta-lactamase [Enterococcus faecium E1574]
gi|430581969|gb|ELB20407.1| metallo-beta-lactamase [Enterococcus faecium E1627]
gi|430585568|gb|ELB23847.1| metallo-beta-lactamase [Enterococcus faecium E1634]
gi|430598144|gb|ELB35893.1| metallo-beta-lactamase [Enterococcus faecium E1904]
gi|430605420|gb|ELB42825.1| metallo-beta-lactamase [Enterococcus faecium E2071]
Length = 559
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V E +LDCG +E+ +D V L+ ++
Sbjct: 2 STIKIIPLGGVRENGKNMYVAEVGEDIFILDCGLKYPENELLGIDVVIPDFTYLEENIDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V L++ +GALPY++ K +S P+F T
Sbjct: 62 VAGVFLTHGHADAIGALPYLLSK--ISVPVFGT 92
>gi|261208209|ref|ZP_05922882.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
TC 6]
gi|289566575|ref|ZP_06446996.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
D344SRF]
gi|294615817|ref|ZP_06695660.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
E1636]
gi|430850588|ref|ZP_19468348.1| metallo-beta-lactamase [Enterococcus faecium E1185]
gi|260077466|gb|EEW65184.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
TC 6]
gi|289161620|gb|EFD09499.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
D344SRF]
gi|291591307|gb|EFF22973.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
E1636]
gi|430535456|gb|ELA75864.1| metallo-beta-lactamase [Enterococcus faecium E1185]
Length = 559
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V E +LDCG +E+ +D V L+ ++
Sbjct: 2 STIKIIPLGGVRENGKNMYVAEVGEDIFILDCGLKYPENELLGIDVVIPDFTYLEENIDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V L++ +GALPY++ K +S P+F T
Sbjct: 62 VAGVFLTHGHADAIGALPYLLSK--ISVPVFGT 92
>gi|227552404|ref|ZP_03982453.1| metallo-beta-lactamase superfamily hydrolase [Enterococcus
faecium TX1330]
gi|257888355|ref|ZP_05668008.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
1,141,733]
gi|257896755|ref|ZP_05676408.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
Com12]
gi|314940205|ref|ZP_07847378.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
gi|314941737|ref|ZP_07848616.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
gi|314947619|ref|ZP_07851028.1| conserved hypothetical protein [Enterococcus faecium TX0082]
gi|314950605|ref|ZP_07853685.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
gi|314992528|ref|ZP_07857949.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
gi|314995311|ref|ZP_07860420.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
gi|389869410|ref|YP_006376833.1| metallo-beta-lactamase superfamily hydrolase [Enterococcus
faecium DO]
gi|424762134|ref|ZP_18189655.1| hypothetical protein HMPREF1345_00127 [Enterococcus faecalis
TX1337RF]
gi|424781113|ref|ZP_18207977.1| hypothetical protein HMPREF1383_00248 [Enterococcus faecium V689]
gi|424795250|ref|ZP_18221125.1| hypothetical protein HMPREF1382_00563 [Enterococcus faecium S447]
gi|424826345|ref|ZP_18251255.1| hypothetical protein HMPREF1381_00902 [Enterococcus faecium R501]
gi|424857249|ref|ZP_18281422.1| hypothetical protein HMPREF1380_01672 [Enterococcus faecium R499]
gi|424877840|ref|ZP_18301483.1| hypothetical protein HMPREF1379_01445 [Enterococcus faecium R497]
gi|424951434|ref|ZP_18366529.1| hypothetical protein HMPREF1378_02523 [Enterococcus faecium R496]
gi|424952749|ref|ZP_18367750.1| hypothetical protein HMPREF1377_00382 [Enterococcus faecium R494]
gi|424957311|ref|ZP_18372044.1| hypothetical protein HMPREF1376_01655 [Enterococcus faecium R446]
gi|424960467|ref|ZP_18374979.1| hypothetical protein HMPREF1375_01327 [Enterococcus faecium
P1986]
gi|424964813|ref|ZP_18378875.1| hypothetical protein HMPREF1374_01975 [Enterococcus faecium
P1190]
gi|424966454|ref|ZP_18380253.1| hypothetical protein HMPREF1373_00257 [Enterococcus faecium
P1140]
gi|424971592|ref|ZP_18385019.1| hypothetical protein HMPREF1372_01940 [Enterococcus faecium
P1139]
gi|424973800|ref|ZP_18387065.1| hypothetical protein HMPREF1371_00729 [Enterococcus faecium
P1137]
gi|424977182|ref|ZP_18390214.1| hypothetical protein HMPREF1370_00965 [Enterococcus faecium
P1123]
gi|424981303|ref|ZP_18394039.1| hypothetical protein HMPREF1369_01542 [Enterococcus faecium
ERV99]
gi|424984098|ref|ZP_18396650.1| hypothetical protein HMPREF1368_01240 [Enterococcus faecium
ERV69]
gi|424989462|ref|ZP_18401726.1| hypothetical protein HMPREF1367_03171 [Enterococcus faecium
ERV38]
gi|424991218|ref|ZP_18403386.1| hypothetical protein HMPREF1366_01578 [Enterococcus faecium
ERV26]
gi|424993353|ref|ZP_18405350.1| hypothetical protein HMPREF1365_00192 [Enterococcus faecium
ERV168]
gi|424997940|ref|ZP_18409663.1| hypothetical protein HMPREF1364_01332 [Enterococcus faecium
ERV165]
gi|425000290|ref|ZP_18411863.1| hypothetical protein HMPREF1363_00447 [Enterococcus faecium
ERV161]
gi|425003058|ref|ZP_18414449.1| hypothetical protein HMPREF1362_00059 [Enterococcus faecium
ERV102]
gi|425008584|ref|ZP_18419654.1| hypothetical protein HMPREF1361_02192 [Enterococcus faecium ERV1]
gi|425011849|ref|ZP_18422710.1| hypothetical protein HMPREF1360_02181 [Enterococcus faecium E422]
gi|425013426|ref|ZP_18424156.1| hypothetical protein HMPREF1359_00484 [Enterococcus faecium E417]
gi|425016632|ref|ZP_18427185.1| hypothetical protein HMPREF1358_00428 [Enterococcus faecium C621]
gi|425020735|ref|ZP_18431030.1| hypothetical protein HMPREF1357_01185 [Enterococcus faecium C497]
gi|425023716|ref|ZP_18433817.1| hypothetical protein HMPREF1356_01101 [Enterococcus faecium
C1904]
gi|425032014|ref|ZP_18437104.1| hypothetical protein HMPREF1355_01355 [Enterococcus faecium 515]
gi|425034175|ref|ZP_18439084.1| hypothetical protein HMPREF1354_00269 [Enterococcus faecium 514]
gi|425037330|ref|ZP_18442003.1| hypothetical protein HMPREF1353_00050 [Enterococcus faecium 513]
gi|425042416|ref|ZP_18446756.1| hypothetical protein HMPREF1352_01801 [Enterococcus faecium 511]
gi|425044586|ref|ZP_18448736.1| hypothetical protein HMPREF1351_00567 [Enterococcus faecium 510]
gi|425049075|ref|ZP_18452951.1| hypothetical protein HMPREF1350_01725 [Enterococcus faecium 509]
gi|425053237|ref|ZP_18456790.1| hypothetical protein HMPREF1349_02385 [Enterococcus faecium 506]
gi|425059993|ref|ZP_18463304.1| hypothetical protein HMPREF1346_00409 [Enterococcus faecium 503]
gi|227178458|gb|EEI59430.1| metallo-beta-lactamase superfamily hydrolase [Enterococcus
faecium TX1330]
gi|257824409|gb|EEV51341.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
1,141,733]
gi|257833320|gb|EEV59741.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
Com12]
gi|313590468|gb|EFR69313.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
gi|313592988|gb|EFR71833.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
gi|313597152|gb|EFR75997.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
gi|313599509|gb|EFR78352.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
gi|313640525|gb|EFS05105.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
gi|313645860|gb|EFS10440.1| conserved hypothetical protein [Enterococcus faecium TX0082]
gi|388534659|gb|AFK59851.1| metallo-beta-lactamase superfamily hydrolase [Enterococcus
faecium DO]
gi|402425332|gb|EJV57480.1| hypothetical protein HMPREF1345_00127 [Enterococcus faecium
TX1337RF]
gi|402924261|gb|EJX44477.1| hypothetical protein HMPREF1381_00902 [Enterococcus faecium R501]
gi|402924310|gb|EJX44523.1| hypothetical protein HMPREF1383_00248 [Enterococcus faecium V689]
gi|402924633|gb|EJX44827.1| hypothetical protein HMPREF1382_00563 [Enterococcus faecium S447]
gi|402929217|gb|EJX48997.1| hypothetical protein HMPREF1380_01672 [Enterococcus faecium R499]
gi|402930096|gb|EJX49792.1| hypothetical protein HMPREF1378_02523 [Enterococcus faecium R496]
gi|402934262|gb|EJX53628.1| hypothetical protein HMPREF1379_01445 [Enterococcus faecium R497]
gi|402940575|gb|EJX59387.1| hypothetical protein HMPREF1377_00382 [Enterococcus faecium R494]
gi|402943820|gb|EJX62281.1| hypothetical protein HMPREF1376_01655 [Enterococcus faecium R446]
gi|402945627|gb|EJX63963.1| hypothetical protein HMPREF1374_01975 [Enterococcus faecium
P1190]
gi|402947597|gb|EJX65800.1| hypothetical protein HMPREF1375_01327 [Enterococcus faecium
P1986]
gi|402956472|gb|EJX73930.1| hypothetical protein HMPREF1373_00257 [Enterococcus faecium
P1140]
gi|402957867|gb|EJX75226.1| hypothetical protein HMPREF1371_00729 [Enterococcus faecium
P1137]
gi|402958543|gb|EJX75850.1| hypothetical protein HMPREF1372_01940 [Enterococcus faecium
P1139]
gi|402963896|gb|EJX80733.1| hypothetical protein HMPREF1369_01542 [Enterococcus faecium
ERV99]
gi|402966873|gb|EJX83476.1| hypothetical protein HMPREF1370_00965 [Enterococcus faecium
P1123]
gi|402968709|gb|EJX85177.1| hypothetical protein HMPREF1367_03171 [Enterococcus faecium
ERV38]
gi|402969871|gb|EJX86252.1| hypothetical protein HMPREF1368_01240 [Enterococcus faecium
ERV69]
gi|402977397|gb|EJX93215.1| hypothetical protein HMPREF1366_01578 [Enterococcus faecium
ERV26]
gi|402982799|gb|EJX98238.1| hypothetical protein HMPREF1365_00192 [Enterococcus faecium
ERV168]
gi|402984682|gb|EJX99970.1| hypothetical protein HMPREF1364_01332 [Enterococcus faecium
ERV165]
gi|402989596|gb|EJY04516.1| hypothetical protein HMPREF1363_00447 [Enterococcus faecium
ERV161]
gi|402992030|gb|EJY06763.1| hypothetical protein HMPREF1361_02192 [Enterococcus faecium ERV1]
gi|402992840|gb|EJY07504.1| hypothetical protein HMPREF1362_00059 [Enterococcus faecium
ERV102]
gi|402995390|gb|EJY09855.1| hypothetical protein HMPREF1360_02181 [Enterococcus faecium E422]
gi|403001015|gb|EJY15096.1| hypothetical protein HMPREF1359_00484 [Enterococcus faecium E417]
gi|403006515|gb|EJY20152.1| hypothetical protein HMPREF1358_00428 [Enterococcus faecium C621]
gi|403008682|gb|EJY22176.1| hypothetical protein HMPREF1357_01185 [Enterococcus faecium C497]
gi|403008954|gb|EJY22431.1| hypothetical protein HMPREF1356_01101 [Enterococcus faecium
C1904]
gi|403014296|gb|EJY27311.1| hypothetical protein HMPREF1355_01355 [Enterococcus faecium 515]
gi|403021149|gb|EJY33624.1| hypothetical protein HMPREF1354_00269 [Enterococcus faecium 514]
gi|403022199|gb|EJY34592.1| hypothetical protein HMPREF1353_00050 [Enterococcus faecium 513]
gi|403023587|gb|EJY35828.1| hypothetical protein HMPREF1352_01801 [Enterococcus faecium 511]
gi|403029208|gb|EJY40978.1| hypothetical protein HMPREF1350_01725 [Enterococcus faecium 509]
gi|403029386|gb|EJY41140.1| hypothetical protein HMPREF1351_00567 [Enterococcus faecium 510]
gi|403031050|gb|EJY42696.1| hypothetical protein HMPREF1349_02385 [Enterococcus faecium 506]
gi|403043080|gb|EJY54008.1| hypothetical protein HMPREF1346_00409 [Enterococcus faecium 503]
Length = 562
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V E +LDCG +E+ +D V L+ ++
Sbjct: 5 STIKIIPLGGVRENGKNMYVAEVGEDIFILDCGLKYPENELLGIDVVIPDFTYLEENIDR 64
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V L++ +GALPY++ K +S P+F T
Sbjct: 65 VAGVFLTHGHADAIGALPYLLSK--ISVPVFGT 95
>gi|69245233|ref|ZP_00603311.1| Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase
[Enterococcus faecium DO]
gi|257880118|ref|ZP_05659771.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
1,230,933]
gi|257882350|ref|ZP_05662003.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
1,231,502]
gi|257885547|ref|ZP_05665200.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
1,231,501]
gi|257891209|ref|ZP_05670862.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
1,231,410]
gi|257894021|ref|ZP_05673674.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
1,231,408]
gi|257899791|ref|ZP_05679444.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
Com15]
gi|260560273|ref|ZP_05832449.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
C68]
gi|293378064|ref|ZP_06624240.1| conserved hypothetical protein [Enterococcus faecium PC4.1]
gi|293560633|ref|ZP_06677120.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
E1162]
gi|293570173|ref|ZP_06681251.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
E1071]
gi|294623460|ref|ZP_06702312.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
U0317]
gi|383329561|ref|YP_005355445.1| Ribonuclease J 2 [Enterococcus faecium Aus0004]
gi|406579775|ref|ZP_11055003.1| Ribonuclease J 2 [Enterococcus sp. GMD4E]
gi|406582007|ref|ZP_11057140.1| Ribonuclease J 2 [Enterococcus sp. GMD3E]
gi|406584180|ref|ZP_11059216.1| Ribonuclease J 2 [Enterococcus sp. GMD2E]
gi|406590437|ref|ZP_11064805.1| Ribonuclease J 2 [Enterococcus sp. GMD1E]
gi|410936206|ref|ZP_11368075.1| metallo-beta-lactamase superfamily hydrolase [Enterococcus sp.
GMD5E]
gi|415896264|ref|ZP_11550787.1| Ribonuclease J 2 [Enterococcus faecium E4453]
gi|416137723|ref|ZP_11598918.1| Ribonuclease J 2 [Enterococcus faecium E4452]
gi|430826778|ref|ZP_19444951.1| metallo-beta-lactamase [Enterococcus faecium E0164]
gi|430829358|ref|ZP_19447452.1| metallo-beta-lactamase [Enterococcus faecium E0269]
gi|430832202|ref|ZP_19450249.1| metallo-beta-lactamase [Enterococcus faecium E0333]
gi|430833863|ref|ZP_19451873.1| metallo-beta-lactamase [Enterococcus faecium E0679]
gi|430836879|ref|ZP_19454856.1| metallo-beta-lactamase [Enterococcus faecium E0680]
gi|430839910|ref|ZP_19457847.1| metallo-beta-lactamase [Enterococcus faecium E0688]
gi|430844998|ref|ZP_19462894.1| metallo-beta-lactamase [Enterococcus faecium E1050]
gi|430848626|ref|ZP_19466438.1| metallo-beta-lactamase [Enterococcus faecium E1133]
gi|430853667|ref|ZP_19471394.1| metallo-beta-lactamase [Enterococcus faecium E1258]
gi|430856507|ref|ZP_19474194.1| metallo-beta-lactamase [Enterococcus faecium E1392]
gi|430859305|ref|ZP_19476917.1| metallo-beta-lactamase [Enterococcus faecium E1552]
gi|430925686|ref|ZP_19485441.1| metallo-beta-lactamase [Enterococcus faecium E1575]
gi|431040089|ref|ZP_19492596.1| metallo-beta-lactamase [Enterococcus faecium E1590]
gi|431064413|ref|ZP_19493760.1| metallo-beta-lactamase [Enterococcus faecium E1604]
gi|431123753|ref|ZP_19498466.1| metallo-beta-lactamase [Enterococcus faecium E1613]
gi|431205524|ref|ZP_19500753.1| metallo-beta-lactamase [Enterococcus faecium E1620]
gi|431238514|ref|ZP_19503383.1| metallo-beta-lactamase [Enterococcus faecium E1622]
gi|431309323|ref|ZP_19508704.1| metallo-beta-lactamase [Enterococcus faecium E1626]
gi|431550029|ref|ZP_19519342.1| metallo-beta-lactamase [Enterococcus faecium E1731]
gi|431593576|ref|ZP_19521905.1| metallo-beta-lactamase [Enterococcus faecium E1861]
gi|431745326|ref|ZP_19534175.1| metallo-beta-lactamase [Enterococcus faecium E2134]
gi|431749732|ref|ZP_19538468.1| metallo-beta-lactamase [Enterococcus faecium E2297]
gi|431751143|ref|ZP_19539836.1| metallo-beta-lactamase [Enterococcus faecium E2620]
gi|431755663|ref|ZP_19544312.1| metallo-beta-lactamase [Enterococcus faecium E2883]
gi|431758062|ref|ZP_19546690.1| metallo-beta-lactamase [Enterococcus faecium E3083]
gi|431763523|ref|ZP_19552072.1| metallo-beta-lactamase [Enterococcus faecium E3548]
gi|431765789|ref|ZP_19554291.1| metallo-beta-lactamase [Enterococcus faecium E4215]
gi|431768174|ref|ZP_19556614.1| metallo-beta-lactamase [Enterococcus faecium E1321]
gi|431771359|ref|ZP_19559743.1| metallo-beta-lactamase [Enterococcus faecium E1644]
gi|431774155|ref|ZP_19562467.1| metallo-beta-lactamase [Enterococcus faecium E2369]
gi|431777281|ref|ZP_19565535.1| metallo-beta-lactamase [Enterococcus faecium E2560]
gi|431780033|ref|ZP_19568222.1| metallo-beta-lactamase [Enterococcus faecium E4389]
gi|431783112|ref|ZP_19571236.1| metallo-beta-lactamase [Enterococcus faecium E6012]
gi|431786573|ref|ZP_19574585.1| metallo-beta-lactamase [Enterococcus faecium E6045]
gi|447913501|ref|YP_007394913.1| RNA-metabolising Zn-dependent hydrolase [Enterococcus faecium
NRRL B-2354]
gi|68195908|gb|EAN10342.1| Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase
[Enterococcus faecium DO]
gi|257814346|gb|EEV43104.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
1,230,933]
gi|257818008|gb|EEV45336.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
1,231,502]
gi|257821403|gb|EEV48533.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
1,231,501]
gi|257827569|gb|EEV54195.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
1,231,410]
gi|257830400|gb|EEV57007.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
1,231,408]
gi|257837703|gb|EEV62777.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
Com15]
gi|260073618|gb|EEW61944.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
C68]
gi|291587322|gb|EFF19208.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
E1071]
gi|291597133|gb|EFF28332.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
U0317]
gi|291605384|gb|EFF34831.1| metallo-beta-lactamase superfamily protein [Enterococcus faecium
E1162]
gi|292643319|gb|EFF61453.1| conserved hypothetical protein [Enterococcus faecium PC4.1]
gi|364091153|gb|EHM33654.1| Ribonuclease J 2 [Enterococcus faecium E4453]
gi|364091341|gb|EHM33821.1| Ribonuclease J 2 [Enterococcus faecium E4452]
gi|378939255|gb|AFC64327.1| Ribonuclease J 2 [Enterococcus faecium Aus0004]
gi|404455106|gb|EKA01975.1| Ribonuclease J 2 [Enterococcus sp. GMD4E]
gi|404458669|gb|EKA05077.1| Ribonuclease J 2 [Enterococcus sp. GMD3E]
gi|404464573|gb|EKA10101.1| Ribonuclease J 2 [Enterococcus sp. GMD2E]
gi|404469337|gb|EKA14146.1| Ribonuclease J 2 [Enterococcus sp. GMD1E]
gi|410735447|gb|EKQ77359.1| metallo-beta-lactamase superfamily hydrolase [Enterococcus sp.
GMD5E]
gi|430444719|gb|ELA54540.1| metallo-beta-lactamase [Enterococcus faecium E0164]
gi|430480193|gb|ELA57381.1| metallo-beta-lactamase [Enterococcus faecium E0333]
gi|430481018|gb|ELA58185.1| metallo-beta-lactamase [Enterococcus faecium E0269]
gi|430485763|gb|ELA62644.1| metallo-beta-lactamase [Enterococcus faecium E0679]
gi|430488202|gb|ELA64895.1| metallo-beta-lactamase [Enterococcus faecium E0680]
gi|430490359|gb|ELA66891.1| metallo-beta-lactamase [Enterococcus faecium E0688]
gi|430495832|gb|ELA71952.1| metallo-beta-lactamase [Enterococcus faecium E1050]
gi|430534433|gb|ELA74883.1| metallo-beta-lactamase [Enterococcus faecium E1133]
gi|430540220|gb|ELA80430.1| metallo-beta-lactamase [Enterococcus faecium E1258]
gi|430543666|gb|ELA83721.1| metallo-beta-lactamase [Enterococcus faecium E1552]
gi|430544420|gb|ELA84454.1| metallo-beta-lactamase [Enterococcus faecium E1392]
gi|430553736|gb|ELA93420.1| metallo-beta-lactamase [Enterococcus faecium E1575]
gi|430561941|gb|ELB01194.1| metallo-beta-lactamase [Enterococcus faecium E1590]
gi|430567385|gb|ELB06469.1| metallo-beta-lactamase [Enterococcus faecium E1613]
gi|430569054|gb|ELB08084.1| metallo-beta-lactamase [Enterococcus faecium E1604]
gi|430571248|gb|ELB10169.1| metallo-beta-lactamase [Enterococcus faecium E1620]
gi|430572215|gb|ELB11077.1| metallo-beta-lactamase [Enterococcus faecium E1622]
gi|430579252|gb|ELB17775.1| metallo-beta-lactamase [Enterococcus faecium E1626]
gi|430590717|gb|ELB28771.1| metallo-beta-lactamase [Enterococcus faecium E1731]
gi|430591453|gb|ELB29491.1| metallo-beta-lactamase [Enterococcus faecium E1861]
gi|430610762|gb|ELB47893.1| metallo-beta-lactamase [Enterococcus faecium E2134]
gi|430611220|gb|ELB48329.1| metallo-beta-lactamase [Enterococcus faecium E2297]
gi|430615960|gb|ELB52892.1| metallo-beta-lactamase [Enterococcus faecium E2620]
gi|430616885|gb|ELB53780.1| metallo-beta-lactamase [Enterococcus faecium E2883]
gi|430617725|gb|ELB54589.1| metallo-beta-lactamase [Enterococcus faecium E3083]
gi|430621896|gb|ELB58637.1| metallo-beta-lactamase [Enterococcus faecium E3548]
gi|430627639|gb|ELB64126.1| metallo-beta-lactamase [Enterococcus faecium E4215]
gi|430629558|gb|ELB65954.1| metallo-beta-lactamase [Enterococcus faecium E1321]
gi|430633423|gb|ELB69589.1| metallo-beta-lactamase [Enterococcus faecium E1644]
gi|430634557|gb|ELB70675.1| metallo-beta-lactamase [Enterococcus faecium E2369]
gi|430639393|gb|ELB75266.1| metallo-beta-lactamase [Enterococcus faecium E2560]
gi|430641114|gb|ELB76934.1| metallo-beta-lactamase [Enterococcus faecium E4389]
gi|430645466|gb|ELB80981.1| metallo-beta-lactamase [Enterococcus faecium E6045]
gi|430646134|gb|ELB81629.1| metallo-beta-lactamase [Enterococcus faecium E6012]
gi|445189210|gb|AGE30852.1| RNA-metabolising Zn-dependent hydrolase [Enterococcus faecium
NRRL B-2354]
Length = 559
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V E +LDCG +E+ +D V L+ ++
Sbjct: 2 STIKIIPLGGVRENGKNMYVAEVGEDIFILDCGLKYPENELLGIDVVIPDFTYLEENIDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V L++ +GALPY++ K +S P+F T
Sbjct: 62 VAGVFLTHGHADAIGALPYLLSK--ISVPVFGT 92
>gi|340345702|ref|ZP_08668834.1| Beta-lactamase domain protein [Candidatus Nitrosoarchaeum koreensis
MY1]
gi|339520843|gb|EGP94566.1| Beta-lactamase domain protein [Candidatus Nitrosoarchaeum koreensis
MY1]
Length = 645
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCG--------WDEMFSMDFVKELKRHVHH 54
S + + +L G C LL E KIL+DCG D +DF L +
Sbjct: 186 SEVSLITLGGFSQVGRSCMLLSTPESKILVDCGINPGAKHPMDSFPRLDF---LDITLDE 242
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+DA+++ + + H G LP + K G PI+ T P M + D +V
Sbjct: 243 LDAIVIGHAHLDHTGFLPALC-KFGYKGPIYCTEPTLPMMNLIQLDAIKV 291
>gi|327288530|ref|XP_003228979.1| PREDICTED: integrator complex subunit 11-like [Anolis carolinensis]
Length = 600
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
IK+T L D C L+ + ++LDCG ++ D ++ + R +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
+++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 LIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDFRKITVD 113
>gi|406926210|gb|EKD62486.1| hypothetical protein ACD_52C00151G0005 [uncultured bacterium]
Length = 551
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 14/108 (12%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD----EMFSMDFV----KELKRHVHH 54
S +K +SGT + CY+ Q E +++DCG EM +D V +K++
Sbjct: 2 SELKFIVISGTTGVTENCYIYQWQEEMMVVDCGVGFPDPEMLGVDLVIPDFTYIKKNKDK 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLF 102
+ +L+S+ HLGALP++ + PI+AT K+ F+ D F
Sbjct: 62 LRGILISHGHEDHLGALPFLFRD--VDVPIYAT----KLVAGFIEDKF 103
>gi|385773323|ref|YP_005645889.1| beta-lactamase [Sulfolobus islandicus HVE10/4]
gi|323477437|gb|ADX82675.1| beta-lactamase domain protein [Sulfolobus islandicus HVE10/4]
Length = 638
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD---EMFSMDFVKEL---KRHVHHIDAV 58
+++T+L G ++ L++ E K+LLD G + MF L + + +DAV
Sbjct: 182 VRITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPRLDIDQLKIEELDAV 241
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++++ + H G +P++ K G P++ T+P + + D V
Sbjct: 242 VITHAHLDHCGMVPFLF-KYGYEGPVYTTVPTRDIMALMQLDSLDV 286
>gi|385775961|ref|YP_005648529.1| beta-lactamase [Sulfolobus islandicus REY15A]
gi|323474709|gb|ADX85315.1| beta-lactamase domain protein [Sulfolobus islandicus REY15A]
Length = 638
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD---EMFSMDFVKEL---KRHVHHIDAV 58
+++T+L G ++ L++ E K+LLD G + MF L + + +DAV
Sbjct: 182 VRITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPRLDIDQLKIEELDAV 241
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++++ + H G +P++ K G P++ T+P + + D V
Sbjct: 242 VITHAHLDHCGMVPFLF-KYGYEGPVYTTVPTRDIMALMQLDSLDV 286
>gi|229579166|ref|YP_002837564.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582079|ref|YP_002840478.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
Y.N.15.51]
gi|284997854|ref|YP_003419621.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
L.D.8.5]
gi|228009880|gb|ACP45642.1| beta-lactamase domain protein [Sulfolobus islandicus Y.G.57.14]
gi|228012795|gb|ACP48556.1| beta-lactamase domain protein [Sulfolobus islandicus Y.N.15.51]
gi|284445749|gb|ADB87251.1| beta-lactamase domain protein [Sulfolobus islandicus L.D.8.5]
Length = 638
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD---EMFSMDFVKEL---KRHVHHIDAV 58
+++T+L G ++ L++ E K+LLD G + MF L + + +DAV
Sbjct: 182 VRITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPRLDIDQLKIEELDAV 241
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++++ + H G +P++ K G P++ T+P + + D V
Sbjct: 242 VITHAHLDHCGMVPFLF-KYGYEGPVYTTVPTRDIMALMQLDSLDV 286
>gi|227827653|ref|YP_002829433.1| beta-lactamase [Sulfolobus islandicus M.14.25]
gi|229584857|ref|YP_002843359.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
M.16.27]
gi|238619821|ref|YP_002914647.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
M.16.4]
gi|227459449|gb|ACP38135.1| beta-lactamase domain protein [Sulfolobus islandicus M.14.25]
gi|228019907|gb|ACP55314.1| beta-lactamase domain protein [Sulfolobus islandicus M.16.27]
gi|238380891|gb|ACR41979.1| beta-lactamase domain protein [Sulfolobus islandicus M.16.4]
Length = 638
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD---EMFSMDFVKEL---KRHVHHIDAV 58
+++T+L G ++ L++ E K+LLD G + MF L + + +DAV
Sbjct: 182 VRITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPRLDIDQLKIEELDAV 241
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++++ + H G +P++ K G P++ T+P + + D V
Sbjct: 242 VITHAHLDHCGMVPFLF-KYGYEGPVYTTVPTRDIMALMQLDSLDV 286
>gi|227830349|ref|YP_002832129.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
L.S.2.15]
gi|227456797|gb|ACP35484.1| beta-lactamase domain protein [Sulfolobus islandicus L.S.2.15]
Length = 638
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD---EMFSMDFVKEL---KRHVHHIDAV 58
+++T+L G ++ L++ E K+LLD G + MF L + + +DAV
Sbjct: 182 VRITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPRLDIDQLKIEELDAV 241
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++++ + H G +P++ K G P++ T+P + + D V
Sbjct: 242 VITHAHLDHCGMVPFLF-KYGYEGPVYTTVPTRDIMALMQLDSLDV 286
>gi|374850794|dbj|BAL53774.1| RNA-metabolising metallo-beta-lactamase [uncultured candidate
division OP1 bacterium]
gi|374856618|dbj|BAL59471.1| RNA-metabolising metallo-beta-lactamase [uncultured candidate
division OP1 bacterium]
Length = 506
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFVKELKRHVHHIDAVLL 60
+K+T + C+LLQ+D+ KIL+DCG +E+ S +++ + ID V+L
Sbjct: 1 MKLTFHGAAKTVTGSCFLLQIDKLKILIDCGLFQGSEEVESRNWLP-FGFPPNKIDYVIL 59
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++ + H G +P +V + G + I T P + ++ + D Q+
Sbjct: 60 THAHLDHCGLIPRLV-REGFAGEILCTEPTRDLARLILTDSAQL 102
>gi|320449268|ref|YP_004201364.1| metallo-beta-lactamase family protein [Thermus scotoductus SA-01]
gi|320149437|gb|ADW20815.1| metallo-beta-lactamase family protein [Thermus scotoductus SA-01]
Length = 431
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHV------HHIDAVLLSYPDVAHLGALPY 73
C+LL + KILLDCG MF +E K H +DAV+L++ + H+G LP
Sbjct: 16 CHLLLAEGRKILLDCG---MFQGR--EEEKNHTPFGFDPQAVDAVVLTHAHLDHVGRLPK 70
Query: 74 MVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLK 111
+ + G P++AT + + Q+ + D +V F +
Sbjct: 71 LF-REGYRGPVYATQATFLLMQIILQDALKVMETPFFE 107
>gi|449329090|gb|AGE95364.1| cleavage and polyadenylation specificity factor 100kDa subunit
[Encephalitozoon cuniculi]
Length = 639
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
+S + +T L T + C++L++D KIL++CG M + + DA+LL+
Sbjct: 3 SSFVSLTPLIKT-ETGVYCHMLEIDNTKILVNCGAPYAMDMSMYTPVLPQILSCDAILLT 61
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
++ +G LPY++ + +F+++P+ +G++
Sbjct: 62 SFNINCIGGLPYVL-RNNYYNKVFSSVPIKVLGKI 95
>gi|19173576|ref|NP_597379.1| CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100kDa SUBUNIT
[Encephalitozoon cuniculi GB-M1]
gi|19170782|emb|CAD26556.1| CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100kDa SUBUNIT
[Encephalitozoon cuniculi GB-M1]
Length = 639
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
+S + +T L T + C++L++D KIL++CG M + + DA+LL+
Sbjct: 3 SSFVSLTPLIKT-ETGVYCHMLEIDNTKILVNCGAPYAMDMSMYTPVLPQILSCDAILLT 61
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
++ +G LPY++ + +F+++P+ +G++
Sbjct: 62 SFNINCIGGLPYVL-RNNYYNKVFSSVPIKVLGKI 95
>gi|395219813|ref|ZP_10402572.1| metallo-beta-lactamase superfamily protein [Pontibacter sp.
BAB1700]
gi|394453804|gb|EJF08613.1| metallo-beta-lactamase superfamily protein [Pontibacter sp.
BAB1700]
Length = 459
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 7 MTSLSGTMDESPPCYLLQVDEFKILLDCG-WDEMFSMDFV--KELKRHVHHIDAVLLSYP 63
+T L G + LL+ D ++L+DCG + + + + ++L+ +V +DA++L++
Sbjct: 10 LTFLGGAGTVTGSKMLLKTDRHQVLIDCGLFQGLKQLRLLNWQDLQLNVEELDAIILTHG 69
Query: 64 DVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
+ H G LP + K G + PI+AT P + ++ + D +++
Sbjct: 70 HLDHCGYLPVLT-KNGYNGPIYATTPTRDVTEIILRDSAKIQ 110
>gi|410721908|ref|ZP_11361230.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
Maddingley MBC34]
gi|410598026|gb|EKQ52618.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
Maddingley MBC34]
Length = 634
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDC-----GWDEMFSMDFVKELKRHVHHIDAVL 59
+++T+L G + +Q KILLDC G D+ S ++ + + ++DAV+
Sbjct: 179 VRLTALGGFREVGRSSIFMQTSNSKILLDCGVNVAGSDDKSSYPYLNVPEFVLDNLDAVI 238
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+S+ + H G LPY+ G P++ T P + + D
Sbjct: 239 ISHAHLDHSGFLPYLF-HYGYEGPVYCTTPTRDLMTLLQLD 278
>gi|336477059|ref|YP_004616200.1| KH-domain/beta-lactamase-domain-containing protein [Methanosalsum
zhilinae DSM 4017]
gi|335930440|gb|AEH60981.1| KH-domain/beta-lactamase-domain protein [Methanosalsum zhilinae DSM
4017]
Length = 636
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHVHHIDAVL 59
+++TSL G + C++L E ++++DCG + M +V E ++ +DAV+
Sbjct: 181 VRITSLGGCREVGRSCFVLSTPESRVMVDCGVNVGSDENMTPYLYVPE-AYPLNQLDAVV 239
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+++ + H G +P ++ K G PI+ T P + + D V
Sbjct: 240 ITHAHLDHQGLVP-LLYKYGYEGPIYCTPPTRDLMALLQLDYIDV 283
>gi|224079882|ref|XP_002197797.1| PREDICTED: integrator complex subunit 11 [Taeniopygia guttata]
Length = 600
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
IK+T L D C L+ + ++LDCG ++ D ++ + R +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ + P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMSHPTKAICPILLEDYRKITVD 113
>gi|328957269|ref|YP_004374655.1| ribonuclease J2 [Carnobacterium sp. 17-4]
gi|328673593|gb|AEB29639.1| ribonuclease J2 [Carnobacterium sp. 17-4]
Length = 559
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y ++VDE +LDCG E+ +D V L+ + +
Sbjct: 2 STIKIIPLGGVRENGKNMYAVEVDEDIFVLDCGLMFPETELLGIDVVIPDFSYLEENKNR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ AV L++ +GALPY + K P+F T + ++F+ QV
Sbjct: 62 VTAVFLTHGHEDAIGALPYFLQK--FDVPVFGTELTIALAKLFVEKDSQV 109
>gi|324504608|gb|ADY41989.1| Integrator complex subunit 11 [Ascaris suum]
Length = 588
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFSMDF--VKELKRHVHHIDA 57
+K+T L D C LL + ++LDCG DE DF + ++
Sbjct: 4 LKVTPLGAGQDVGRSCILLSIGGKNVMLDCGMHMGYQDERRFPDFSYISGGVPLTDYLHC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPYM G PI+ T P + + + D +V+ +
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYEGPIYMTYPTKAIAPVLLEDFRKVQTE 113
>gi|300778243|ref|ZP_07088101.1| beta-lactamase family protein [Chryseobacterium gleum ATCC 35910]
gi|300503753|gb|EFK34893.1| beta-lactamase family protein [Chryseobacterium gleum ATCC 35910]
Length = 464
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKE-----LKRHVHHIDAVL 59
I + SL G + +LL+ E IL+DCG + + +++E L V IDA++
Sbjct: 4 ITLKSLGGAETVTGSKHLLKTPELTILIDCGLFQ--GIKYLREQNWLPLNTDVSKIDAII 61
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
L++ + H G +P +V K G I+ T P ++ ++ + D
Sbjct: 62 LTHAHLDHCGYIPLIV-KNGFKGKIYMTGPTKELTKLILLD 101
>gi|260770634|ref|ZP_05879565.1| metallo-beta-lactamase family protein RNA-specific [Vibrio
furnissii CIP 102972]
gi|260614360|gb|EEX39548.1| metallo-beta-lactamase family protein RNA-specific [Vibrio
furnissii CIP 102972]
Length = 439
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH--VHHIDAVLLSY 62
+++T G + C+ L VD+ I +DCG MF ++++ + HI A++L++
Sbjct: 1 MQLTHHGGKQTVTGSCHELVVDDLAIFIDCG---MFQGQDTQDVEPDFPIDHIQALILTH 57
Query: 63 PDVAHLGALPYMVGKCGLSCPIFAT 87
+ H+G LP+++ G + PI+ T
Sbjct: 58 AHIDHIGRLPWLIA-SGFTAPIYCT 81
>gi|257075969|ref|ZP_05570330.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Ferroplasma acidarmanus fer1]
Length = 637
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG----------WDEMFSMDFVKELKRHVHH 54
I++T+L G + L+ + K+L+DCG W+E + + E++
Sbjct: 177 IRITALGGHREVGRSATLISTNNSKVLVDCGMININDPEHPWEEAPYL-YAPEIQPFT-S 234
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKL 112
+DAV+L++ + H G LP + K G + P+++T P + + D +V + KL
Sbjct: 235 LDAVVLTHAHLDHSGLLPLLF-KYGYTGPVYSTAPTRDLAALLQNDYLKVSHSENHKL 291
>gi|18312205|ref|NP_558872.1| mRNA 3'-end processing factor [Pyrobaculum aerophilum str. IM2]
gi|18159643|gb|AAL63054.1| mRNA 3'-end processing factor, conjectural [Pyrobaculum aerophilum
str. IM2]
Length = 634
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHVHHIDAVL 59
I +T L M+ L+ E +LLDCG DE F + + ++ R +DAV+
Sbjct: 174 ITVTFLGAAMEVGRSAILVSTTESNVLLDCGLKPAQNDEEFPLLDLIDIDR----LDAVV 229
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
L++ + H+G LP++ K G P++ T P + + D +++
Sbjct: 230 LTHAHMDHVGCLPFLF-KYGYKGPVYMTDPTKYQAFILLSDYVELK 274
>gi|389860541|ref|YP_006362780.1| beta-lactamase [Thermogladius cellulolyticus 1633]
gi|388525444|gb|AFK50642.1| beta-lactamase domain protein [Thermogladius cellulolyticus 1633]
Length = 653
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKR------HVHHIDAV 58
+++T+L G M+ L++ E ++LLD G + D +K V +DAV
Sbjct: 188 VRVTALGGFMEVGRSAILVETKESRVLLDLGINVGAIHDPLKAYPEIDLDAIRVDELDAV 247
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++++ + H+G +P ++ K G P + T P ++ + + DL QV
Sbjct: 248 IVTHSHLDHVGVVP-LLYKYGYRGPTYMTKPTRELSAIMIQDLIQV 292
>gi|209875817|ref|XP_002139351.1| RNA-metabolising metallo-beta-lactamase family protein
[Cryptosporidium muris RN66]
gi|209554957|gb|EEA05002.1| RNA-metabolising metallo-beta-lactamase family protein
[Cryptosporidium muris RN66]
Length = 797
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFV---KELKRHVHH-- 54
I +T L D C L+++ E ++LDCG D+ DF L V +
Sbjct: 3 ITVTPLGAGQDVGRSCILVRIYEKVVMLDCGMHMGYKDDRRYPDFTLISSSLDPVVINSL 62
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+D V++S+ + H GALPY K G S PI T P + + + D +V
Sbjct: 63 VDVVVISHYHLDHCGALPYFTEKIGYSGPIIMTYPTKAVSPILLADCCKV 112
>gi|15897661|ref|NP_342266.1| mRNA 3'-end processing factor [Sulfolobus solfataricus P2]
gi|6015715|emb|CAB57542.1| mRNA 3'-end polyadenylation factor [Sulfolobus solfataricus P2]
gi|13813930|gb|AAK41056.1| mRNA 3'-end processing factor, putative [Sulfolobus solfataricus
P2]
Length = 639
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD---EMFSMDFVKEL---KRHVHHIDAV 58
+++T+L G ++ L++ E K+LLD G + MF +L + + +DAV
Sbjct: 183 VRITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPKLDIDQLKMEELDAV 242
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++++ + H G +P++ K G P++ T+P + + D V
Sbjct: 243 VITHAHLDHCGMVPFLF-KYGYEGPVYTTVPTRDIMALMQLDSLDV 287
>gi|284174985|ref|ZP_06388954.1| mRNA 3'-end processing factor, putative [Sulfolobus solfataricus
98/2]
Length = 638
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD---EMFSMDFVKEL---KRHVHHIDAV 58
+++T+L G ++ L++ E K+LLD G + MF +L + + +DAV
Sbjct: 182 VRITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPKLDIDQLKMEELDAV 241
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++++ + H G +P++ K G P++ T+P + + D V
Sbjct: 242 VITHAHLDHCGMVPFLF-KYGYEGPVYTTVPTRDIMALMQLDSLDV 286
>gi|384434275|ref|YP_005643633.1| KH-domain/beta-lactamase-domain-containing protein [Sulfolobus
solfataricus 98/2]
gi|261602429|gb|ACX92032.1| KH-domain/beta-lactamase-domain protein [Sulfolobus solfataricus
98/2]
Length = 635
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD---EMFSMDFVKEL---KRHVHHIDAV 58
+++T+L G ++ L++ E K+LLD G + MF +L + + +DAV
Sbjct: 179 VRITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPKLDIDQLKMEELDAV 238
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++++ + H G +P++ K G P++ T+P + + D V
Sbjct: 239 VITHAHLDHCGMVPFLF-KYGYEGPVYTTVPTRDIMALMQLDSLDV 283
>gi|375089352|ref|ZP_09735679.1| hypothetical protein HMPREF9708_00069 [Facklamia languida CCUG
37842]
gi|374567128|gb|EHR38359.1| hypothetical protein HMPREF9708_00069 [Facklamia languida CCUG
37842]
Length = 559
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
IK+ SL G +E Y+++V++ +LDCG D++ +D V L+ + +
Sbjct: 4 IKIISLGGIREEGKNMYVVEVNQALFVLDCGLLYPEDDLLGIDMVIPDFTYLEENRDRVV 63
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ LS+ +GALPY++ K + P+F T
Sbjct: 64 GIFLSHGHADAVGALPYLLDK--IEAPVFGT 92
>gi|239623763|ref|ZP_04666794.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521794|gb|EEQ61660.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 535
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+++T + + + C+ L+V E K+L+DCG ++ ++ EL ID V L++
Sbjct: 3 MRLTFIGADHEVTGSCHFLEVGETKVLIDCGMEQGNNVYQNAELPVSYREIDYVFLTHAH 62
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ H G LP++ + G + AT + + + D
Sbjct: 63 IDHAGMLPWIYAR-GFRGRVIATYATVDLCNIMLKD 97
>gi|383320534|ref|YP_005381375.1| metal-dependent RNAase-like protein [Methanocella conradii HZ254]
gi|379321904|gb|AFD00857.1| metal-dependent RNAase-like protein [Methanocella conradii HZ254]
Length = 637
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-----FVKELKRHVHHIDAVL 59
I++T+L G + +LL E +IL+DCG + + +V E+ + IDAV+
Sbjct: 181 IRITTLGGCKEVGRSSFLLSTPETRILIDCGVNTGAESNGTPYLYVPEVSP-LSSIDAVV 239
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
L++ + H G +P + K G P++ T P + + D +V
Sbjct: 240 LTHAHLDHSGMIPLLF-KYGYDGPVYMTPPTRDLMALLQLDYIEV 283
>gi|295135245|ref|YP_003585921.1| metallo-beta-lactamase superfamily protein [Zunongwangia profunda
SM-A87]
gi|294983260|gb|ADF53725.1| metallo-beta-lactamase superfamily protein [Zunongwangia profunda
SM-A87]
Length = 458
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 16/109 (14%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKR--------HVHHID 56
I +GT+ S YL+ + KIL+DCG +F +KEL+ +V ID
Sbjct: 8 IHFLGAAGTVTGSK--YLVDTGDRKILIDCG---LFQG--LKELRLKNWEYPPVNVGDID 60
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
AVLL++ + H G LP +V K G + PI+ T P + ++ + D +++
Sbjct: 61 AVLLTHGHMDHTGYLPRLV-KQGFNGPIYGTNPTLDIAKIILNDSAKIQ 108
>gi|86141953|ref|ZP_01060477.1| hypothetical protein MED217_02440 [Leeuwenhoekiella blandensis
MED217]
gi|85831516|gb|EAQ49972.1| hypothetical protein MED217_02440 [Leeuwenhoekiella blandensis
MED217]
Length = 458
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 16/109 (14%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKR--------HVHHID 56
I +GT+ S YL+ + KIL+DCG +F +KEL+ +V ID
Sbjct: 8 IHFLGAAGTVTGSK--YLVDTGDRKILIDCG---LFQG--LKELRLKNWEYPPVNVGDID 60
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
AVLL++ + H G LP +V K G + PI+ T P + ++ + D +++
Sbjct: 61 AVLLTHGHMDHTGYLPRLV-KQGFNGPIYGTNPTLDIAKIILNDSAKIQ 108
>gi|296109857|ref|YP_003616806.1| KH-domain/beta-lactamase-domain protein [methanocaldococcus
infernus ME]
gi|295434671|gb|ADG13842.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus
infernus ME]
Length = 631
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKEL---KRHVHHIDAVLLS 61
I+++ L G + C LLQ + K+LLDCG + + + + + +DAV+++
Sbjct: 177 IRVSFLGGAREVGRSCLLLQTPDTKVLLDCGVNIAYEEKMYPQFDAPEFSIEDLDAVIIT 236
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ + H G LP + + G P++ T P + + D +
Sbjct: 237 HAHLDHCGFLPGLF-RYGYDGPVYCTRPTRDLMTLLQKDYLDI 278
>gi|145478255|ref|XP_001425150.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392218|emb|CAK57752.1| unnamed protein product [Paramecium tetraurelia]
Length = 690
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW------DEMFSMDFVKELKRHVHHID 56
S + +T L + C LLQ E +I+ DCG + ++ + ++ + + ID
Sbjct: 6 SKLIITPLGAGNEVGRSCILLQFQEKQIMFDCGIHMNKENKGVMALPYFNKIDK-IEDID 64
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLL 114
+L+++ + H GALPY + I+ T P ++ + + D +V+ + F + L+
Sbjct: 65 LILITHFHLDHCGALPYFLKNYKFKGKIYMTTPTKEIYGLVLKDSIKVKSEDFSQDLI 122
>gi|333988300|ref|YP_004520907.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium sp. SWAN-1]
gi|333826444|gb|AEG19106.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
SWAN-1]
Length = 634
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 6 KMTSLSGTMDESPPCYLLQVDEFKILLDC-----GWDEMFSMDFVKELKRHVHHIDAVLL 60
++TSL G + LQ KILLDC G D+ S ++ + + +DAV++
Sbjct: 180 RLTSLGGFREVGRSSLFLQTTNSKILLDCGVNVAGTDDKSSYPYLNVPEFVLDDLDAVVI 239
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
S+ + H G LPY+ G P++ T P + + D
Sbjct: 240 SHAHLDHSGFLPYLY-HYGYEGPVYCTTPTRDLMTLLQLD 278
>gi|118385183|ref|XP_001025729.1| hypothetical protein TTHERM_00930650 [Tetrahymena thermophila]
gi|89307496|gb|EAS05484.1| hypothetical protein TTHERM_00930650 [Tetrahymena thermophila
SB210]
Length = 749
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 17/99 (17%)
Query: 15 DESPPCYLLQVDEFKILLDCGWDEMFSMDF------VKELKRHVHHIDAVLLSYPDVAHL 68
D + L+ +E ILLDCG + +MDF +++LK+ +D +LLS+ ++
Sbjct: 14 DGATSTLLILDEEIYILLDCGLNS--NMDFTAYWQNIEKLKK----VDMILLSHVGAEYV 67
Query: 69 GALPYMVGK-----CGLSCPIFATIPVYKMGQMFMYDLF 102
GALP+++ G + I++T PV K+G Y+ +
Sbjct: 68 GALPFLLNNKQIMSQGKNIRIYSTTPVMKLGMFNSYNQY 106
>gi|440783043|ref|ZP_20960854.1| metal-dependent RNase [Clostridium pasteurianum DSM 525]
gi|440219618|gb|ELP58829.1| metal-dependent RNase [Clostridium pasteurianum DSM 525]
Length = 828
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELK--RHVHHIDAVLLSY 62
+ ++ L G + C L+ V ILLDCG + S D + + K + +DA+++S+
Sbjct: 1 MNISFLGGANEVGGSCILISVSNKNILLDCGIRQSSSKDPLPDFKTIQDKGGLDAIIISH 60
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
+ H+G+LP ++ K I+ TI + ++ +YD ++ + L++ L E
Sbjct: 61 AHMDHIGSLP-IISKEYPFAKIYTTIMTKDLMKVLLYDSLKIMNNRELEIPLYAE 114
>gi|260774416|ref|ZP_05883330.1| metallo-beta-lactamase family protein RNA-specific [Vibrio
metschnikovii CIP 69.14]
gi|260610543|gb|EEX35748.1| metallo-beta-lactamase family protein RNA-specific [Vibrio
metschnikovii CIP 69.14]
Length = 443
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 20 CYLLQVDEFKILLDCG-WDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKC 78
C+ L+VD +L+DCG + + D EL V HIDA+++++ + H+G +P+++
Sbjct: 16 CHELRVDGVAVLIDCGLFQGKDATDI--ELDFPVEHIDALIVTHAHIDHIGRIPWLLA-A 72
Query: 79 GLSCPIFAT 87
G + PI+ T
Sbjct: 73 GFTGPIYCT 81
>gi|157963049|ref|YP_001503083.1| beta-lactamase domain-containing protein [Shewanella pealeana
ATCC 700345]
gi|157848049|gb|ABV88548.1| beta-lactamase domain protein [Shewanella pealeana ATCC 700345]
Length = 489
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHV---HHIDAVLLS 61
+ ++ L T + + C+LL +D ++LLDCG + D ++ + I AV+LS
Sbjct: 3 MTLSFLGATQEVTGSCHLLTIDGRQVLLDCGLIQGSKADVLRNHEPFAFTPSQIHAVVLS 62
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFA 86
+ + H G LP +V K G + PI++
Sbjct: 63 HAHIDHSGRLPLLV-KSGFTGPIYS 86
>gi|357419642|ref|YP_004932634.1| RNA-metabolising metallo-beta-lactamase [Thermovirga lienii DSM
17291]
gi|355397108|gb|AER66537.1| RNA-metabolising metallo-beta-lactamase [Thermovirga lienii DSM
17291]
Length = 537
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 21 YLLQVDEFKILLDCG-WDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79
YLL+VD ++L+DCG + S D L IDAVLL++ + H G +P +V K G
Sbjct: 17 YLLEVDGRRVLVDCGLYQGANSGDNHVPLDYDPSTIDAVLLTHAHLDHTGKVPLLV-KQG 75
Query: 80 LSCPIFATIPVYKMGQMFMYDLFQVR 105
P++ T P ++ + D ++
Sbjct: 76 YKGPVYGTRPTLELCDILWRDAAHIQ 101
>gi|292490277|ref|YP_003525716.1| beta-lactamase [Nitrosococcus halophilus Nc4]
gi|291578872|gb|ADE13329.1| beta-lactamase domain protein [Nitrosococcus halophilus Nc4]
Length = 482
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKE---LKRHVHHIDAVLLSYPDVAHLGALPYMVG 76
C+L+QV E KILLDCG + D + IDAV+LS+ + H G LP ++
Sbjct: 23 CHLVQVGEKKILLDCGLIQGRPKDEARNREPFPFDPETIDAVVLSHAHIDHSGRLPLLI- 81
Query: 77 KCGLSCPIF 85
K G S P++
Sbjct: 82 KSGYSGPVY 90
>gi|431798503|ref|YP_007225407.1| exonuclease [Echinicola vietnamensis DSM 17526]
gi|430789268|gb|AGA79397.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Echinicola vietnamensis DSM 17526]
Length = 458
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 16/109 (14%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKR--------HVHHID 56
I +GT+ S YL+ + KIL+DCG +F +KEL+ +V ID
Sbjct: 8 IHFLGAAGTVTGSK--YLVDTGDRKILIDCG---LFQG--LKELRLKNWEYPPVNVADID 60
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
AVLL++ + H G LP +V K G PI+ T P + ++ + D +++
Sbjct: 61 AVLLTHGHMDHTGYLPRLV-KQGFKGPIYGTNPTLDIAKIILNDSAKIQ 108
>gi|289579410|ref|YP_003478037.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
italicus Ab9]
gi|289529123|gb|ADD03475.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
italicus Ab9]
Length = 829
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 10 LSGTMDE-SPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHH--IDAVLLSYPDVA 66
SG +E CYL+ +D ILLDCG + D + + + H +DAV++S+ +
Sbjct: 5 FSGGANEVGASCYLINLDGKNILLDCGIRMSSTKDNLPDFRLIQEHGGVDAVIVSHAHLD 64
Query: 67 HLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
H GALP ++ + I+ T + ++ +YD ++
Sbjct: 65 HTGALP-IISRMYPQAKIYMTHATKDLTRVLLYDSLKI 101
>gi|296121596|ref|YP_003629374.1| beta-lactamase [Planctomyces limnophilus DSM 3776]
gi|296013936|gb|ADG67175.1| beta-lactamase domain protein [Planctomyces limnophilus DSM 3776]
Length = 465
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVH------HIDAV 58
+K+T L + + +L++ ++LLDCG +F + ++ H +DAV
Sbjct: 1 MKLTVLGAAGEVTGSQHLIETSTRRLLLDCG---LFQGHRAESRAKNSHFHCRPKELDAV 57
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
+LS+ + H G LP + K G PIF T P ++ + + D +++
Sbjct: 58 ILSHAHIDHCGNLPGLY-KAGFRGPIFCTPPTAEIAAVMLRDAAKIQ 103
>gi|206895786|ref|YP_002246519.1| RNA-metabolising metallo-beta-lactamase [Coprothermobacter
proteolyticus DSM 5265]
gi|206738403|gb|ACI17481.1| RNA-metabolising metallo-beta-lactamase [Coprothermobacter
proteolyticus DSM 5265]
Length = 504
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDF-VKELKRHVHHIDAVLLSYP 63
+++T L + + YLL+ D K+L+D G + D+ + L ++A+LL++
Sbjct: 1 MELTFLGAAQEVTGSSYLLESDNAKLLIDFGMFQGKEEDWNYQPLDIKAKEVNALLLTHA 60
Query: 64 DVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ H G +P +V K G PIFAT P ++ ++ D
Sbjct: 61 HLDHSGRIPVLV-KNGFRGPIFATPPTIELTKLLWED 96
>gi|386822414|ref|ZP_10109629.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Joostella marina DSM 19592]
gi|386423660|gb|EIJ37491.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Joostella marina DSM 19592]
Length = 458
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 16/109 (14%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKR--------HVHHID 56
I +GT+ S YL+ + KIL+DCG +F +KEL+ +V ID
Sbjct: 8 IHFLGAAGTVTGSK--YLVDTGDKKILIDCG---LFQG--LKELRLKNWEYPPVNVADID 60
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
AVLL++ + H G LP +V K G PI+ T P + ++ + D +++
Sbjct: 61 AVLLTHGHMDHTGYLPRLV-KQGFKGPIYGTNPTLDIAKIILNDSAKIQ 108
>gi|325958080|ref|YP_004289546.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium sp. AL-21]
gi|325329512|gb|ADZ08574.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
AL-21]
Length = 634
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 6 KMTSLSGTMDESPPCYLLQVDEFKILLDC-----GWDEMFSMDFVKELKRHVHHIDAVLL 60
++TSL G + LQ KI+LDC G D+ S ++ + + +DAV++
Sbjct: 180 RLTSLGGFREVGRSSLFLQTSNSKIMLDCGVNVAGSDDKSSYPYLNVPEFVLDDLDAVII 239
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
S+ + H G LPY+ G P++ T P + + D
Sbjct: 240 SHAHLDHSGFLPYLY-HYGYEGPVYCTTPTRDLMTLLQLD 278
>gi|365888360|ref|ZP_09427132.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3809]
gi|365335975|emb|CCD99663.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3809]
Length = 530
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKR-----HVHHIDAVLLSYPDVAHLGALPYM 74
CYLL+ D+ +IL+DCG + +KEL IDAVLL++ + H G LP +
Sbjct: 18 CYLLRTDQGQILIDCGLFQ--GQKTLKELNYGDFPFRPADIDAVLLTHAHIDHSGLLPKL 75
Query: 75 VGKCGLSCPIFAT 87
V + G IFAT
Sbjct: 76 V-RLGFDGKIFAT 87
>gi|366992944|ref|XP_003676237.1| hypothetical protein NCAS_0D02950 [Naumovozyma castellii CBS 4309]
gi|342302103|emb|CCC69876.1| hypothetical protein NCAS_0D02950 [Naumovozyma castellii CBS 4309]
Length = 771
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 6 KMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDAVLLS 61
K SL G+ + C++LQ I+LD G + M S+ F E + ID +L+S
Sbjct: 10 KFFSLGGSNEVGRSCHILQYKGKTIMLDAGVHPAYQGMASLPFYDEFD--LSTIDVLLIS 67
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ + H +LPY++ K +F T P + + + D +V
Sbjct: 68 HFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLRDFVRV 110
>gi|255531843|ref|YP_003092215.1| beta-lactamase domain-containing protein [Pedobacter heparinus DSM
2366]
gi|255344827|gb|ACU04153.1| beta-lactamase domain protein [Pedobacter heparinus DSM 2366]
Length = 461
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 15/104 (14%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVH--------HID 56
+K+T L + +LLQ+D + I++DCG +D+ KE ++ + ID
Sbjct: 1 MKLTILGAAQQVTGSMHLLQLDNYNIIVDCG------LDYEKETYQNENLYFPFDPAAID 54
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
V+L++ + H G LP +V + G + I T P + ++ + D
Sbjct: 55 LVILTHAHIDHSGNLPTLV-RMGFNGQILCTPPTADLTELLLLD 97
>gi|170289661|ref|YP_001736477.1| RNA processing exonuclease [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170173741|gb|ACB06794.1| Predicted exonuclease of the beta-lactamase fold involved in RNA
processing [Candidatus Korarchaeum cryptofilum OPF8]
Length = 424
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
I +T L GT + LL+ K+LLD G + E +DAVLL++
Sbjct: 6 ISITCLGGTREVGKSAILLEAGRTKVLLDYGMKLIPKQH--PEFPPIPEEVDAVLLTHAH 63
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ H GALP +V G+ PI+A ++ +YD +V
Sbjct: 64 LDHSGALPRLVSH-GMEVPIYALDITKYYTELLLYDSIKV 102
>gi|153002333|ref|YP_001368014.1| RNA-metabolising metallo-beta-lactamase [Shewanella baltica OS185]
gi|151366951|gb|ABS09951.1| RNA-metabolising metallo-beta-lactamase [Shewanella baltica OS185]
Length = 480
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH------VHHIDAVLLSYP 63
L T + + C+LL VD +LLDCG + D EL+ H I AV+LS+
Sbjct: 8 LGATEEVTGSCHLLSVDHEHLLLDCGLIQGGKAD---ELRNHDPFAFDPESISAVVLSHA 64
Query: 64 DVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD--LFQVR 105
+ H G LP +V K G PI+ ++ + + D + Q R
Sbjct: 65 HIDHSGRLPLLV-KAGFDGPIYTHKATAELCAIMLKDAAMLQTR 107
>gi|304310918|ref|YP_003810516.1| Metallo-beta-lactamase superfamily protein [gamma proteobacterium
HdN1]
gi|301796651|emb|CBL44863.1| Metallo-beta-lactamase superfamily protein [gamma proteobacterium
HdN1]
Length = 473
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 20/106 (18%)
Query: 6 KMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----------DEMFSMDFVKELKRHVHH 54
K+T + + CYLL+ +IL++CG DE F D
Sbjct: 3 KLTFYGAAKEVTGSCYLLETRHSRILMECGMHQGGNAAERRNDEPFPFD--------PRS 54
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
IDAV+LS+ + H G LP +V K G PI+AT ++ + + D
Sbjct: 55 IDAVVLSHAHMDHSGLLPKLV-KEGFHGPIYATDATRRLLAIMLRD 99
>gi|343525114|ref|ZP_08762070.1| metallo-beta-lactamase domain protein [Streptococcus constellatus
subsp. pharyngis SK1060 = CCUG 46377]
gi|343396986|gb|EGV09522.1| metallo-beta-lactamase domain protein [Streptococcus constellatus
subsp. pharyngis SK1060 = CCUG 46377]
Length = 116
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y+ +VDE +LD G +E +DFV L +
Sbjct: 2 SNIKLIALGGVRENGKNLYIAEVDESIFILDVGLKYPENEQLGVDFVIPNMDYLFENKDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
I V L++ +GALPY++ + P+F + ++ ++F+
Sbjct: 62 ISGVFLTHGHADAIGALPYLLAET--KVPVFGSELTIELAKLFV 103
>gi|222445335|ref|ZP_03607850.1| hypothetical protein METSMIALI_00963 [Methanobrevibacter smithii
DSM 2375]
gi|261350104|ref|ZP_05975521.1| putative mRNA 3-end processing factor [Methanobrevibacter smithii
DSM 2374]
gi|222434900|gb|EEE42065.1| arCOG00543 universal archaeal KH-domain/beta-lactamase-domain
protein [Methanobrevibacter smithii DSM 2375]
gi|288860890|gb|EFC93188.1| putative mRNA 3-end processing factor [Methanobrevibacter smithii
DSM 2374]
Length = 636
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 6 KMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFSMDFVKELKRHVHHIDAVLL 60
++TS+ G + LLQ ++LLDCG D + ++ + + +DAV++
Sbjct: 181 RVTSMGGFKEVGRSSMLLQTPNSRVLLDCGVNVAASDNKNAFPYLNVPEFSIEELDAVII 240
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
S+ + H G +PY+ G PI+ T P + + D + +
Sbjct: 241 SHAHLDHCGFVPYLY-HYGYEGPIYCTTPTRDLTTLLQLDHLDIAH 285
>gi|148643098|ref|YP_001273611.1| metal-dependent RNase [Methanobrevibacter smithii ATCC 35061]
gi|148552115|gb|ABQ87243.1| predicted metal-dependent RNase [Methanobrevibacter smithii ATCC
35061]
Length = 636
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 6 KMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFSMDFVKELKRHVHHIDAVLL 60
++TS+ G + LLQ ++LLDCG D + ++ + + +DAV++
Sbjct: 181 RVTSMGGFKEVGRSSMLLQTPNSRVLLDCGVNVAASDNKNAFPYLNVPEFSIEELDAVII 240
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
S+ + H G +PY+ G PI+ T P + + D + +
Sbjct: 241 SHAHLDHCGFVPYLY-HYGYEGPIYCTTPTRDLTTLLQLDHLDIAH 285
>gi|373947990|ref|ZP_09607951.1| RNA-metabolising metallo-beta-lactamase [Shewanella baltica OS183]
gi|386326164|ref|YP_006022281.1| RNA-metabolising metallo-beta-lactamase [Shewanella baltica BA175]
gi|333820309|gb|AEG12975.1| RNA-metabolising metallo-beta-lactamase [Shewanella baltica BA175]
gi|373884590|gb|EHQ13482.1| RNA-metabolising metallo-beta-lactamase [Shewanella baltica OS183]
Length = 480
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH------VHHIDAVLLSYP 63
L T + + C+LL VD +LLDCG + D EL+ H I AV+LS+
Sbjct: 8 LGATEEVTGSCHLLSVDHEHLLLDCGLIQGGKAD---ELRNHDPFAFDPESISAVVLSHA 64
Query: 64 DVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD--LFQVR 105
+ H G LP +V K G PI+ ++ + + D + Q R
Sbjct: 65 HIDHSGRLPLLV-KAGFDGPIYTHKATAELCAIMLKDAAMLQTR 107
>gi|217974921|ref|YP_002359672.1| RNA-metabolising metallo-beta-lactamase [Shewanella baltica OS223]
gi|217500056|gb|ACK48249.1| RNA-metabolising metallo-beta-lactamase [Shewanella baltica OS223]
Length = 480
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH------VHHIDAVLLSYP 63
L T + + C+LL VD +LLDCG + D EL+ H I AV+LS+
Sbjct: 8 LGATEEVTGSCHLLSVDHEHLLLDCGLIQGGKAD---ELRNHDPFAFDPESISAVVLSHA 64
Query: 64 DVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD--LFQVR 105
+ H G LP +V K G PI+ ++ + + D + Q R
Sbjct: 65 HIDHSGRLPLLV-KAGFDGPIYTHKATAELCAIMLKDAAMLQTR 107
>gi|160877057|ref|YP_001556373.1| RNA-metabolising metallo-beta-lactamase [Shewanella baltica OS195]
gi|378710272|ref|YP_005275166.1| RNA-metabolising metallo-beta-lactamase [Shewanella baltica OS678]
gi|418022390|ref|ZP_12661377.1| beta-lactamase domain protein [Shewanella baltica OS625]
gi|160862579|gb|ABX51113.1| RNA-metabolising metallo-beta-lactamase [Shewanella baltica OS195]
gi|315269261|gb|ADT96114.1| RNA-metabolising metallo-beta-lactamase [Shewanella baltica OS678]
gi|353538615|gb|EHC08170.1| beta-lactamase domain protein [Shewanella baltica OS625]
Length = 480
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH------VHHIDAVLLSYP 63
L T + + C+LL VD +LLDCG + D EL+ H I AV+LS+
Sbjct: 8 LGATEEVTGSCHLLSVDHEHLLLDCGLIQGGKAD---ELRNHDPFAFDPESISAVVLSHA 64
Query: 64 DVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD--LFQVR 105
+ H G LP +V K G PI+ ++ + + D + Q R
Sbjct: 65 HIDHSGRLPLLV-KAGFDGPIYTHKATAELCAIMLKDAAMLQTR 107
>gi|408370701|ref|ZP_11168476.1| metallo-beta-lactamase superfamily protein [Galbibacter sp.
ck-I2-15]
gi|407743938|gb|EKF55510.1| metallo-beta-lactamase superfamily protein [Galbibacter sp.
ck-I2-15]
Length = 458
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 14/93 (15%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKR--------HVHHIDAVLLSYPDVAHLGALP 72
YL+ + KIL+DCG +F +KEL+ +V IDAVLL++ + H G LP
Sbjct: 22 YLVDTGDKKILIDCG---LFQG--LKELRLKNWEYPPVNVADIDAVLLTHGHMDHTGYLP 76
Query: 73 YMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
+V K G PI+ T P + ++ + D +++
Sbjct: 77 RLV-KQGFKGPIYGTNPTLDIAKIILNDSAKIQ 108
>gi|304317834|ref|YP_003852979.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779336|gb|ADL69895.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 820
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHH---IDAVLLS 61
+K G + CYL+ +D ILLDCG S D + + + H+ +D +++S
Sbjct: 1 MKFYFCGGASEVGASCYLVNIDGKNILLDCGIRMSSSKDNLPDFQ-HIQENGGVDVIVIS 59
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ + H+GALP ++ + I+ T + ++ +YD ++
Sbjct: 60 HAHMDHIGALP-IISRIYPDAKIYMTHAAKDLTRVLLYDSLKI 101
>gi|406994452|gb|EKE13438.1| hypothetical protein ACD_13C00015G0003 [uncultured bacterium]
Length = 550
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S +K +LSGT + Y+ + I++DCG EMF +D V +K++
Sbjct: 2 SALKFIALSGTTGVTENLYVYEYGNDMIVVDCGVGFPESEMFGVDLVIPDFSYIKQNAAK 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDT 108
+ +L+S+ HLGALP+++ + I+AT K+ F+ D F+ YDT
Sbjct: 62 LRGILISHGHEDHLGALPFLLKD--VKTTIYAT----KLVGGFIQDKFE-DYDT 108
>gi|336312874|ref|ZP_08567819.1| metallo-beta-lactamase family protein, RNA-specific [Shewanella sp.
HN-41]
gi|335863486|gb|EGM68630.1| metallo-beta-lactamase family protein, RNA-specific [Shewanella sp.
HN-41]
Length = 478
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH------VHHIDAVLLSYP 63
L T + + C+LL VD +LLDCG + D EL+ H I AV+LS+
Sbjct: 6 LGATEEVTGSCHLLSVDHEHLLLDCGLIQGGKAD---ELRNHDPFAFDPESISAVVLSHA 62
Query: 64 DVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD--LFQVR 105
+ H G LP +V K G PI+ ++ + + D + Q R
Sbjct: 63 HIDHSGRLPLLV-KSGFDGPIYTHKATTELCAIMLKDAAMLQTR 105
>gi|345867698|ref|ZP_08819703.1| RNA-metabolising metallo-beta-lactamase family protein [Bizionia
argentinensis JUB59]
gi|344047865|gb|EGV43484.1| RNA-metabolising metallo-beta-lactamase family protein [Bizionia
argentinensis JUB59]
Length = 461
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFVKELKRHVHHIDAVLL 60
+K+T L + + YLL+ +L+DCG E+ +++ ++L V ID VLL
Sbjct: 9 VKVTFLGASQVVTGSKYLLETYGLNVLIDCGMFQGLKELRELNW-RDLSIDVPAIDVVLL 67
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
++ + H+G LP +V K G S I T P + ++ + D
Sbjct: 68 THGHLDHVGYLPRLV-KQGFSGKIIGTAPTLAIAEIILKD 106
>gi|347522769|ref|YP_004780339.1| KH-domain/beta-lactamase-domain containing protein [Pyrolobus
fumarii 1A]
gi|343459651|gb|AEM38087.1| KH-domain/beta-lactamase-domain protein [Pyrolobus fumarii 1A]
Length = 649
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD------EMFSMDFVKELKRHVHHIDAV 58
+++ +L G M+ L++ E ++LLD G + +M+ + E++ +DAV
Sbjct: 182 VRIVALGGFMEVGRSAILVETSESRVLLDLGVNPGGTGYDMYPRLDIDEIRP--EELDAV 239
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++++ + H+G +P++ K G P++ T P + + ++D V
Sbjct: 240 IITHAHLDHMGLVPFLF-KYGFKGPVYVTKPTRDLMVLSLFDFLDV 284
>gi|295397814|ref|ZP_06807879.1| metallo-beta-lactamase superfamily protein [Aerococcus viridans
ATCC 11563]
gi|294973949|gb|EFG49711.1| metallo-beta-lactamase superfamily protein [Aerococcus viridans
ATCC 11563]
Length = 567
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S I + +L G + YL++VDE +LDCG DE+ +D + LK +
Sbjct: 2 SDINIIALGGVRENGKNMYLVEVDEAIYVLDCGLVYPPDELLGIDMMIPDFTYLKENQDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V L++ +GALPY++ + P+F T
Sbjct: 62 VAGVFLTHGHADAIGALPYLLKD--IQVPVFGT 92
>gi|435851175|ref|YP_007312761.1| KH-domain/beta-lactamase-domain protein [Methanomethylovorans
hollandica DSM 15978]
gi|433661805|gb|AGB49231.1| KH-domain/beta-lactamase-domain protein [Methanomethylovorans
hollandica DSM 15978]
Length = 636
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFSMDFVKELKRHVHHIDAVL 59
+++TSL G + C+LL E +++DCG + M +V E+ +DAV+
Sbjct: 181 VRVTSLGGCKEVGRSCFLLSTPESCVMIDCGVNVGSEEHMTPYLYVPEVSP-FSKLDAVV 239
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+++ + H G LP ++ + G P++ T P + + D V
Sbjct: 240 ITHAHLDHQGLLP-LLYRYGFEGPVYCTPPTRDLMALLQLDYIDV 283
>gi|317495781|ref|ZP_07954144.1| metallo-beta-lactamase superfamily protein [Gemella morbillorum
M424]
gi|316913958|gb|EFV35441.1| metallo-beta-lactamase superfamily protein [Gemella morbillorum
M424]
Length = 611
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHV 52
+TS I++T L G + + Y++++ + +LD G EM +D V L R+
Sbjct: 60 LTSKIRITPLGGVDEVAKNMYMIEIADEIFVLDAGLMFPETEMIGIDAVIPDISYLVRNK 119
Query: 53 HHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ + LS V+ +GA+PY++ K L CP++ +
Sbjct: 120 QKVRGIFLSNGHVSSMGAVPYIIDK--LKCPVYGS 152
>gi|66816359|ref|XP_642189.1| integrator complex subunit 11 [Dictyostelium discoideum AX4]
gi|74856745|sp|Q54YL3.1|INT11_DICDI RecName: Full=Integrator complex subunit 11 homolog
gi|60470287|gb|EAL68267.1| integrator complex subunit 11 [Dictyostelium discoideum AX4]
Length = 744
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD-------EMFSMDFVKELKRHVHHIDA 57
IK+ L D C ++ + I+ DCG ++ + + ID
Sbjct: 3 IKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVIDC 62
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
V++++ + H GALP+ CG PI+ T+P + + + D
Sbjct: 63 VIITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLED 105
>gi|124028414|ref|YP_001013734.1| exonuclease [Hyperthermus butylicus DSM 5456]
gi|123979108|gb|ABM81389.1| predicted exonuclease [Hyperthermus butylicus DSM 5456]
Length = 643
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD------EMFSMDFVKELKRHVHHIDAV 58
+++T+L G M+ L++ E KILLD G + ++ + +L ++ +DAV
Sbjct: 179 VRITALGGFMEVGRSAILIETSESKILLDVGINPSGIGYNLYPRLDIDQL--NLEELDAV 236
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIP 89
++++ + H+G +PY+ K G P++AT P
Sbjct: 237 VVTHAHLDHIGLVPYLF-KYGYRGPVYATKP 266
>gi|428177137|gb|EKX46018.1| hypothetical protein GUITHDRAFT_70813 [Guillardia theta CCMP2712]
Length = 485
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
IK+T L D C L+ + I+LDCG DE DF + + ID
Sbjct: 3 IKVTPLGAGQDVGKSCILVTIGGKNIMLDCGMHPGYNDERRFPDFRYISKEGNFTGLIDL 62
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H G+LPY G P++AT P + + + D ++
Sbjct: 63 VIISHFHLDHCGSLPYFTEVLGYDGPMYATHPTKAIMPILLEDYRKI 109
>gi|321257420|ref|XP_003193582.1| cleavage and polyadenylation specificity factor subunit
[Cryptococcus gattii WM276]
gi|317460052|gb|ADV21795.1| Cleavage and polyadenylation specificity factor subunit, putative
[Cryptococcus gattii WM276]
Length = 900
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 20 CYLLQVDEFKILLDCGWDEMFS------MDFVKELKRHVHHIDAVLLSYPDVAHLGALPY 73
CYLL++D+ +ILLD G + S D+ + ++ + VLLS+ +L PY
Sbjct: 21 CYLLELDDARILLDMGQRDYRSSTQQGRWDYEEAVRDLAPTLSLVLLSHSSSNYLSLYPY 80
Query: 74 MVGKCGLSCPIFATIPVYKMGQM 96
+ GL+CP++AT P +MG++
Sbjct: 81 ARARWGLTCPVYATQPTVEMGRV 103
>gi|444519369|gb|ELV12789.1| Integrator complex subunit 11 [Tupaia chinensis]
Length = 601
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 5 IKMTSLSGT-MDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHID 56
I++T L G D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLVGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 63
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 114
>gi|297545551|ref|YP_003677853.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296843326|gb|ADH61842.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 829
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 10 LSGTMDE-SPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHH--IDAVLLSYPDVA 66
SG +E CYL+ +D ILLDCG + D + + + H +DA+++S+ +
Sbjct: 5 FSGGANEVGASCYLINLDGKNILLDCGIRMSSTKDNLPDFRLIQEHGGVDAIIVSHAHLD 64
Query: 67 HLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
H GALP ++ + I+ T + ++ +YD ++
Sbjct: 65 HTGALP-IISRMYPQAKIYMTHATKDLTRVLLYDSLKI 101
>gi|167625216|ref|YP_001675510.1| RNA-metabolising metallo-beta-lactamase [Shewanella halifaxensis
HAW-EB4]
gi|167355238|gb|ABZ77851.1| RNA-metabolising metallo-beta-lactamase [Shewanella halifaxensis
HAW-EB4]
Length = 489
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHV---HHIDAVLLS 61
+ ++ L T + + C+LL +D ++LLDCG + D ++ + I AV+LS
Sbjct: 3 MTLSFLGATQEVTGSCHLLNIDGQQVLLDCGLIQGSKADVLRNHEPFAFSPSQIHAVVLS 62
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD--LFQVR 105
+ + H G LP +V + G + PI++ ++ + + D + Q R
Sbjct: 63 HAHIDHSGRLPLLV-RSGFTGPIYSHKATVELCAVMLKDAAMLQAR 107
>gi|410862881|ref|YP_006978115.1| Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase
[Alteromonas macleodii AltDE1]
gi|410820143|gb|AFV86760.1| Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase
[Alteromonas macleodii AltDE1]
Length = 471
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 14/88 (15%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKRH------VHHIDAVLLSYPDVAHLGALPYM 74
+LL+ + +LLDCG ++ +E K H V IDAV+LS+ + H G LP +
Sbjct: 18 HLLKTEHSTLLLDCG---LYQGRRNEEAKNHEPLPIDVSQIDAVILSHAHLDHSGRLPIL 74
Query: 75 V--GKCGLSCPIFATIPVYKMGQMFMYD 100
+ G CG PI+ T P ++ ++ + D
Sbjct: 75 LREGYCG---PIYMTRPTVELIEVLLKD 99
>gi|440747016|ref|ZP_20926277.1| Metallo-beta-lactamase family protein, RNA-specific [Mariniradius
saccharolyticus AK6]
gi|436484645|gb|ELP40621.1| Metallo-beta-lactamase family protein, RNA-specific [Mariniradius
saccharolyticus AK6]
Length = 467
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 22/108 (20%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG------------WDEMFSMDFVKELKRHV 52
+++ L G + YLL++D K L+DCG WDE F +D +
Sbjct: 3 VQIKFLGGAKSVTGSRYLLEIDHQKFLVDCGLFQGLKELRLRNWDE-FPIDPAE------ 55
Query: 53 HHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
I AV+L++ + H G LP +V K G S I+ T P + ++ + D
Sbjct: 56 --IHAVILTHAHIDHTGYLPKLV-KEGFSGRIYCTYPTLDLTKILLKD 100
>gi|387594701|gb|EIJ89725.1| hypothetical protein NEQG_00495 [Nematocida parisii ERTm3]
gi|387596451|gb|EIJ94072.1| hypothetical protein NEPG_00738 [Nematocida parisii ERTm1]
Length = 744
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79
C ++++D +IL++ G + S+D +L+ ++ I ++L D++ LG L ++ G
Sbjct: 20 CTIVEIDNLRILVNFGTEYDLSLDIYSDLE-YLKSITHIILCSSDISSLGGLIHL-ESLG 77
Query: 80 LSCPIFATIPVYKMGQMFMYDLFQV 104
+ PI+ T+P+ +G++ + + +V
Sbjct: 78 IDVPIYGTVPIKILGRIEILERIKV 102
>gi|260584721|ref|ZP_05852467.1| metallo-beta-lactamase [Granulicatella elegans ATCC 700633]
gi|260157744|gb|EEW92814.1| metallo-beta-lactamase [Granulicatella elegans ATCC 700633]
Length = 558
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y ++VDE +LDCG DE+ +D V L+ +
Sbjct: 2 SSIKIMALGGVRENGKSLYAVEVDEDIFVLDCGLVYPEDELLGIDVVIPDFTYLEDNKDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
I V L++ +GALPY + + P+F T + + ++ QV+
Sbjct: 62 IAGVFLTHGHADAVGALPYFLKN--IQAPVFGTELTIALAKYYVESSKQVK 110
>gi|357053037|ref|ZP_09114140.1| hypothetical protein HMPREF9467_01112 [Clostridium
clostridioforme 2_1_49FAA]
gi|355386016|gb|EHG33057.1| hypothetical protein HMPREF9467_01112 [Clostridium
clostridioforme 2_1_49FAA]
Length = 535
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+++T + + + C+ L+V K+L+DCG ++ ++ EL H ID V L++
Sbjct: 3 MRLTFIGADHEVTGSCHFLEVGNTKVLIDCGMEQGNNIYQNAELPVGYHEIDYVFLTHAH 62
Query: 65 VAHLGALPYM 74
+ H G LP++
Sbjct: 63 IDHAGMLPWI 72
>gi|358638400|dbj|BAL25697.1| RNA-metabolising metallo-beta-lactamase [Azoarcus sp. KH32C]
Length = 469
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH--------VHH 54
+++ +T T + + C+L+Q ++IL+DCG + +E +RH
Sbjct: 6 TVMNVTFFGATREVTGSCFLVQTGHWRILVDCGL-----IQGSREHERHNRAPFPFSPRD 60
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIF 85
+DAV+L++ + H G LP +V K G PIF
Sbjct: 61 LDAVVLTHAHLDHSGRLPLLV-KQGFDGPIF 90
>gi|392967058|ref|ZP_10332476.1| beta-lactamase domain protein [Fibrisoma limi BUZ 3]
gi|387843855|emb|CCH54524.1| beta-lactamase domain protein [Fibrisoma limi BUZ 3]
Length = 473
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHV-------HHIDA 57
+K++ L + +LL+VD+++IL+DCG D S + H I+
Sbjct: 1 MKLSFLGAARQVTGSMFLLEVDDYRILIDCGSDLERSNGQTPPITPHTGFFPFEASSINL 60
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
VLL++ V H G LP + + G I T P Y + ++ + D
Sbjct: 61 VLLTHAHVDHSGNLPNLY-REGYEGQILCTEPTYALTEVLLRD 102
>gi|398815178|ref|ZP_10573849.1| hypothetical protein PMI05_02273 [Brevibacillus sp. BC25]
gi|398035178|gb|EJL28428.1| hypothetical protein PMI05_02273 [Brevibacillus sp. BC25]
Length = 550
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 10/92 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S +K+ ++ G + Y ++ ++ I++DCG +EMF +D V LK + H
Sbjct: 2 SDVKIFAMGGLGEIGKNMYCVEYEDEIIIIDCGVKFPENEMFGIDLVIPDISYLKDNQHK 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFA 86
I A+LL++ H+GA+PY++ + + PI+
Sbjct: 62 IKALLLTHGHEDHIGAIPYILRQ--IKVPIYG 91
>gi|226310040|ref|YP_002769934.1| ribonuclease J 1 [Brevibacillus brevis NBRC 100599]
gi|226092988|dbj|BAH41430.1| ribonuclease J 1 [Brevibacillus brevis NBRC 100599]
Length = 556
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 10/92 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S +K+ ++ G + Y ++ ++ I++DCG +EMF +D V LK + H
Sbjct: 8 SDVKIFAMGGLGEIGKNMYCVEYEDEIIIIDCGVKFPENEMFGIDLVIPDISYLKDNQHK 67
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFA 86
I A+LL++ H+GA+PY++ + + PI+
Sbjct: 68 IKALLLTHGHEDHIGAIPYILRQ--IKVPIYG 97
>gi|392529080|ref|ZP_10276217.1| ribonuclease J2 [Carnobacterium maltaromaticum ATCC 35586]
gi|414083534|ref|YP_006992242.1| metallo-beta-lactamase superfamily protein [Carnobacterium
maltaromaticum LMA28]
gi|412997118|emb|CCO10927.1| metallo-beta-lactamase superfamily protein [Carnobacterium
maltaromaticum LMA28]
Length = 563
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+++V+E +LDCG +E+ +D V L+ +
Sbjct: 2 SDIKIIPLGGVRENGKNMYIVEVEEEIFVLDCGLMYPENELLGIDVVIPDFSYLEANADR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
+ V L++ +GALPY + K + P+F T + ++F+
Sbjct: 62 VTGVFLTHGHADAIGALPYFLQK--FNVPVFGTELTIALAKLFV 103
>gi|146339725|ref|YP_001204773.1| metallo-beta-lactamase [Bradyrhizobium sp. ORS 278]
gi|146192531|emb|CAL76536.1| Conserved hypothetical protein; Putative Metallo-beta-lactamase
family protein [Bradyrhizobium sp. ORS 278]
Length = 530
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKR-----HVHHIDAVLLSYPDVAHLGALPYM 74
CYLL+ D+ ++L+DCG + +KEL IDAVLL++ + H G LP +
Sbjct: 18 CYLLRTDQGQVLIDCGLFQ--GQKTLKELNYGDFPFRPAEIDAVLLTHAHIDHSGLLPKL 75
Query: 75 VGKCGLSCPIFAT 87
V + G IFAT
Sbjct: 76 V-RLGFDGRIFAT 87
>gi|421074667|ref|ZP_15535695.1| Beta-Casp domain-containing protein [Pelosinus fermentans JBW45]
gi|392527266|gb|EIW50364.1| Beta-Casp domain-containing protein [Pelosinus fermentans JBW45]
Length = 533
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 18/106 (16%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS----------MDFVKELKRHVHH 54
+K+T L + YLL+VD KIL+DCG MF DF+ +
Sbjct: 1 MKLTFLGAAKIVTGSSYLLEVDTQKILIDCG---MFQGSKTITAFNRRDFLYDPTA---- 53
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
ID VLL++ + H G LP + K G PI+AT +++ + + D
Sbjct: 54 IDCVLLTHAHIDHSGLLPKLC-KSGFKGPIYATRVTHELCGIMLPD 98
>gi|408382616|ref|ZP_11180159.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium formicicum DSM 3637]
gi|407814692|gb|EKF85316.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium formicicum DSM 3637]
Length = 634
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDC-----GWDEMFSMDFVKELKRHVHHIDAVL 59
+++T+L G + +Q KIL+DC G D+ S ++ + + +DAV+
Sbjct: 179 VRLTALGGFREVGRSSLFMQTSNSKILMDCGVNVAGSDDKSSYPYLNVPEFVLDDLDAVI 238
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+S+ + H G LPY+ G P++ T P + + D
Sbjct: 239 ISHAHLDHSGFLPYLF-HYGYEGPVYCTTPTRDLMTLLQLD 278
>gi|15679214|ref|NP_276331.1| cleavage and polyadenylation specificity factor
[Methanothermobacter thermautotrophicus str. Delta H]
gi|333944120|pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
gi|333944121|pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
gi|2622312|gb|AAB85692.1| cleavage and polyadenylation specificity factor
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 636
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 6 KMTSLSGTMDESPPCYLLQVDEFKILLDC-----GWDEMFSMDFVKELKRHVHHIDAVLL 60
++T++ G + C LQ ++LLDC G D+ S ++ + + +DAV++
Sbjct: 181 RLTAMGGFREVGRSCLYLQTPNSRVLLDCGVNVAGGDDKNSYPYLNVPEFTLDSLDAVII 240
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
++ + H G LPY+ G P++ T P + + D
Sbjct: 241 THAHLDHSGFLPYLY-HYGYDGPVYCTAPTRDLMTLLQLD 279
>gi|307595786|ref|YP_003902103.1| KH-domain/beta-lactamase-domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550987|gb|ADN51052.1| KH-domain/beta-lactamase-domain protein [Vulcanisaeta distributa
DSM 14429]
Length = 643
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKR-HVHHIDAVLLSYP 63
I +T L M+ L++ E ILLDCG S D L + +DAV++++
Sbjct: 185 ITVTGLGAQMEVGRSAILVRTKESSILLDCGVKPSSSGDEAPLLDEVDLDTLDAVVITHA 244
Query: 64 DVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQ 103
+ H+G +PY+ K G P++ T P + ++ + D +
Sbjct: 245 HMDHIGYVPYLF-KYGYKGPVYMTEPTKYLMEVLLTDYIE 283
>gi|406898346|gb|EKD41979.1| hypothetical protein ACD_73C00410G0001 [uncultured bacterium]
Length = 455
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 14/105 (13%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH--------VHHI 55
++K+T L G + YLL+ +IL+DCG +KEL+ +H I
Sbjct: 1 MMKITFLGGAQTVTGSKYLLEAAGKRILVDCGL-----FQGLKELRLRNWDKPPFDIHSI 55
Query: 56 DAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
DAV+L++ + H G LP + K G P+++T +++ ++ + D
Sbjct: 56 DAVVLTHAHIDHSGYLPILYQK-GYRGPVYSTQSTFELCRILLPD 99
>gi|304315326|ref|YP_003850473.1| metal-dependent RNase [Methanothermobacter marburgensis str.
Marburg]
gi|302588785|gb|ADL59160.1| predicted metal-dependent RNase [Methanothermobacter marburgensis
str. Marburg]
Length = 636
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 6 KMTSLSGTMDESPPCYLLQVDEFKILLDC-----GWDEMFSMDFVKELKRHVHHIDAVLL 60
++T++ G + C LQ ++LLDC G D+ S ++ + + +DAV++
Sbjct: 181 RLTAMGGFREVGRSCLYLQTPNSRVLLDCGVNVAGGDDRNSYPYLNVPEFTLDSLDAVII 240
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
++ + H G LPY+ G P++ T P + + D
Sbjct: 241 THAHLDHSGFLPYLY-HYGYDGPVYCTAPTRDLMTLLQLD 279
>gi|297588707|ref|ZP_06947350.1| metallo-beta-lactamase [Finegoldia magna ATCC 53516]
gi|297574080|gb|EFH92801.1| metallo-beta-lactamase [Finegoldia magna ATCC 53516]
Length = 539
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH----VHHIDAVLL 60
+K+T L + + CYL++ ++ K ++DCG +F E K H + ++ +LL
Sbjct: 1 MKITFLGAAQEVTGSCYLVETEKHKFMVDCG---LFQGSKELEQKNHDDIDFNEVEFMLL 57
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
++ + H G +P ++ K G PI+ T + ++ + D +++
Sbjct: 58 THAHIDHTGRIP-LLYKNGFRKPIYCTKATKDLAEIMLMDSAKIQ 101
>gi|452991890|emb|CCQ96731.1| RNA-metabolising metallo-beta-lactamase [Clostridium ultunense Esp]
Length = 543
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 21 YLLQVDEFKILLDCGW----DEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVG 76
+LL D++KIL+DCG +E+ M+F + + ID ++LS+ + H G +P ++
Sbjct: 17 FLLTTDKYKILVDCGMFQGNEELERMNF-EPFPYNPAEIDYLILSHAHIDHSGRIPKLI- 74
Query: 77 KCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
K G I +T P + + ++ + D +++
Sbjct: 75 KDGFKGRIISTKPTFDLCKIMLMDSAKIQ 103
>gi|355677685|ref|ZP_09060452.1| hypothetical protein HMPREF9469_03489 [Clostridium citroniae
WAL-17108]
gi|354812771|gb|EHE97385.1| hypothetical protein HMPREF9469_03489 [Clostridium citroniae
WAL-17108]
Length = 535
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+K+T + + + C+ L+V K+L+DCG ++ ++ EL ID V L++
Sbjct: 3 MKLTFIGADHEVTGSCHFLEVGASKVLIDCGMEQGNNVYQNAELPVSYREIDYVFLTHAH 62
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ H G LP++ + G + AT + + + D
Sbjct: 63 IDHAGMLPWIYAR-GFRGQVIATYATVDLCNIMLKD 97
>gi|170291024|ref|YP_001737840.1| beta-lactamase domain-containing protein [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175104|gb|ACB08157.1| beta-lactamase domain protein [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 624
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 22 LLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLS 81
L+ DE +LLDCG F + + +DAV++++ + H GALP + K G
Sbjct: 192 LITTDESNVLLDCGISLSSRSAFPRLDLIDIDELDAVIITHAHLDHSGALPLLF-KYGYR 250
Query: 82 CPIFATIPVYKMGQMFMYD 100
P++ T P + + +YD
Sbjct: 251 GPVYLTRPTRDLMMLLLYD 269
>gi|392552999|ref|ZP_10300136.1| beta-lactamase domain-containing protein [Pseudoalteromonas
spongiae UST010723-006]
Length = 451
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDE---MFSMDFVKELKRHVHHIDAVLLS 61
+K+T + + +LL+VD KIL+DCG + + + L V +DAVLL+
Sbjct: 1 MKLTFIGAASTVTGSKHLLEVDNLKILIDCGLYQGIKNYRTRNWQALPFDVTKLDAVLLT 60
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ + H G +P ++ K G PIF + K+ ++ + D
Sbjct: 61 HAHIDHSGYIP-LLYKQGFRGPIFCSHETLKLCEVLLPD 98
>gi|386012036|ref|YP_005930313.1| Metallo-beta-lactamase family protein [Pseudomonas putida BIRD-1]
gi|313498742|gb|ADR60108.1| Metallo-beta-lactamase family protein [Pseudomonas putida BIRD-1]
Length = 455
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKE---LKRHVHHIDAVLLS 61
+++T L GT + +LL D ++L+DCG + F ++ L + +DAV+L+
Sbjct: 1 MQLTFLGGTGTVTGSKFLLSRDSTRVLVDCGLFQGFKQLRLRNWQPLPPALRALDAVVLT 60
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ + H G LP +V + G PI+AT + ++ + D
Sbjct: 61 HAHLDHSGYLPVLV-REGYRGPIYATPATCALAEILLLD 98
>gi|308509314|ref|XP_003116840.1| hypothetical protein CRE_01624 [Caenorhabditis remanei]
gi|308241754|gb|EFO85706.1| hypothetical protein CRE_01624 [Caenorhabditis remanei]
Length = 612
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW------DEMF-SMDFVKELKRHVHHIDA 57
IK+ L D C L+ + I++DCG D F ++ R ++D
Sbjct: 8 IKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDC 67
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H G+LP+M G PI+ T P + + + D +V+ D
Sbjct: 68 VIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCD 117
>gi|297527491|ref|YP_003669515.1| KH-domain/beta-lactamase-domain-containing protein [Staphylothermus
hellenicus DSM 12710]
gi|297256407|gb|ADI32616.1| KH-domain/beta-lactamase-domain protein [Staphylothermus hellenicus
DSM 12710]
Length = 647
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD------FVKELKRHVHHIDAV 58
+++T+L G M+ L++ E ++LLD G + D F+ + ++ +DAV
Sbjct: 182 VRITALGGFMEVGRSAILVETRESRVLLDLGINVGAGTDYNRAYPFIDIDQLNLSELDAV 241
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++++ + H+G +P ++ K G P++ T P ++ + + DL +V
Sbjct: 242 IVTHAHLDHIGLVP-LLYKYGYRGPLYVTKPTRELMVIMIKDLIEV 286
>gi|126465835|ref|YP_001040944.1| beta-lactamase domain-containing protein [Staphylothermus marinus
F1]
gi|126014658|gb|ABN70036.1| beta-lactamase domain protein [Staphylothermus marinus F1]
Length = 652
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD------FVKELKRHVHHIDAV 58
+++T+L G M+ L++ E ++LLD G + D F+ + ++ +DAV
Sbjct: 187 VRITALGGFMEVGRSAILVETRESRVLLDLGINVGAGTDYDRAYPFIDIDQLNLSELDAV 246
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++++ + H+G +P ++ K G P++ T P ++ + + DL +V
Sbjct: 247 IVTHAHLDHIGLVP-LLYKYGYRGPLYVTKPTRELMVIMIKDLIEV 291
>gi|392940509|ref|ZP_10306153.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacter siderophilus SR4]
gi|392292259|gb|EIW00703.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacter siderophilus SR4]
Length = 548
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 12/91 (13%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-------DEMFSMDFVKELKRHVHHID 56
I+K++ L + + CYL++ ++ K L+DCG DE+ +F+ + V+ ID
Sbjct: 6 IVKISFLGAAKEVTGSCYLVETEKTKFLVDCGMFQGGEVEDELNYQEFIFD----VNDID 61
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
VLL++ + H G +P ++ K G I+AT
Sbjct: 62 FVLLTHAHIDHSGRIP-LLYKRGYRKRIYAT 91
>gi|347525695|ref|YP_004832443.1| metallo-beta-lactamase superfamily protein [Lactobacillus ruminis
ATCC 27782]
gi|345284654|gb|AEN78507.1| metallo-beta-lactamase superfamily protein [Lactobacillus ruminis
ATCC 27782]
Length = 590
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + + Y+++VD+ +LDCG +E+ +D V + L+++
Sbjct: 2 SDIKIIALGGVRENAKNMYVVEVDDNIYILDCGLKYPENELLGIDTVIPDFEYLRQNARR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY V + P+F +
Sbjct: 62 IVGVFLTHGHADAIGALPYFVSE--FDVPVFGS 92
>gi|335996832|ref|ZP_08562749.1| metallo-beta-lactamase superfamily hydrolase [Lactobacillus
ruminis SPM0211]
gi|335351902|gb|EGM53393.1| metallo-beta-lactamase superfamily hydrolase [Lactobacillus
ruminis SPM0211]
Length = 590
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + + Y+++VD+ +LDCG +E+ +D V + L+++
Sbjct: 2 SDIKIIALGGVRENAKNMYVVEVDDNIYILDCGLKYPENELLGIDTVIPDFEYLRQNARR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY V + P+F +
Sbjct: 62 IVGVFLTHGHADAIGALPYFVSE--FDVPVFGS 92
>gi|323340662|ref|ZP_08080914.1| metallo-beta-lactamase superfamily protein [Lactobacillus ruminis
ATCC 25644]
gi|417974337|ref|ZP_12615158.1| metallo-beta-lactamase superfamily protein [Lactobacillus ruminis
ATCC 25644]
gi|323091785|gb|EFZ34405.1| metallo-beta-lactamase superfamily protein [Lactobacillus ruminis
ATCC 25644]
gi|346329334|gb|EGX97632.1| metallo-beta-lactamase superfamily protein [Lactobacillus ruminis
ATCC 25644]
Length = 590
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + + Y+++VD+ +LDCG +E+ +D V + L+++
Sbjct: 2 SDIKIIALGGVRENAKNMYVVEVDDNIYILDCGLKYPENELLGIDTVIPDFEYLRQNARR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY V + P+F +
Sbjct: 62 IVGVFLTHGHADAIGALPYFVSE--FDVPVFGS 92
>gi|294945374|ref|XP_002784648.1| cleavage and polyadenylation specificity factor, putative
[Perkinsus marinus ATCC 50983]
gi|239897833|gb|EER16444.1| cleavage and polyadenylation specificity factor, putative
[Perkinsus marinus ATCC 50983]
Length = 1115
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 30 ILLDCGWDEMFSMDFVKEL--------KRHVHHIDAVLLSYPDVAHLGALPYM 74
+LLDCGW E D + L R V ID LLS+ D+ H GA PY+
Sbjct: 45 VLLDCGWTEEMDPDMLGPLVAEQQPSGARLVDQIDVCLLSFADLQHCGAWPYV 97
>gi|375129251|ref|YP_004991346.1| exonuclease of the beta-lactamase fold involved in RNA processing
[Vibrio furnissii NCTC 11218]
gi|315178420|gb|ADT85334.1| Predicted exonuclease of the beta-lactamase fold involved in RNA
processing [Vibrio furnissii NCTC 11218]
Length = 439
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRH--VHHIDAVLLSYPDVAHLGALPYMVGK 77
C+ L VD+ I +DCG MF ++++ + HI A++L++ + H+G LP+++
Sbjct: 16 CHELVVDDLAIFIDCG---MFQGQDTQDVEPDFPIEHIQALILTHAHIDHIGRLPWLIA- 71
Query: 78 CGLSCPIFAT 87
G + PI+ T
Sbjct: 72 SGFTAPIYCT 81
>gi|258405797|ref|YP_003198539.1| beta-lactamase domain-containing protein [Desulfohalobium retbaense
DSM 5692]
gi|257798024|gb|ACV68961.1| beta-lactamase domain protein [Desulfohalobium retbaense DSM 5692]
Length = 544
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 22/108 (20%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG------------WDEMFSMDFVKELKRHV 52
+K+ L + CYLL+ ++++ +DCG WD S+ EL
Sbjct: 7 MKVRFLGAARTVTGSCYLLETEQYRFAVDCGLHQGNQEIDARNWD--LSLYTPAEL---- 60
Query: 53 HHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
D +L+++ + H G LP +V K G S P++AT P + ++ + D
Sbjct: 61 ---DFMLVTHAHIDHTGLLPRLV-KLGFSGPVYATEPTCGLMEIMLQD 104
>gi|167646414|ref|YP_001684077.1| beta-lactamase domain-containing protein [Caulobacter sp. K31]
gi|167348844|gb|ABZ71579.1| beta-lactamase domain protein [Caulobacter sp. K31]
Length = 547
Score = 43.1 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFVKELKRHVHHID 56
MT+I+ +G + S C LQ E IL+DCG + ++++ E ID
Sbjct: 1 MTAILSFHGAAGCVTGS--CARLQTQEATILIDCGMFQGSKTLKALNY-GEFPFDPRQID 57
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
AVLL++ V H G LP ++ G PI+AT + + + D
Sbjct: 58 AVLLTHAHVDHCGLLPKLM-LAGFEGPIYATAATRDLCAVMLAD 100
>gi|32564696|ref|NP_495706.2| Protein F10B5.8 [Caenorhabditis elegans]
gi|26985793|emb|CAB54223.2| Protein F10B5.8 [Caenorhabditis elegans]
Length = 608
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW------DEMF-SMDFVKELKRHVHHIDA 57
IK+ L D C L+ + I++DCG D F ++ R ++D
Sbjct: 8 IKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDC 67
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H G+LP+M G PI+ T P + + + D +V+ D
Sbjct: 68 VIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCD 117
>gi|12053137|emb|CAB66747.1| hypothetical protein [Homo sapiens]
gi|49065540|emb|CAG38588.1| FLJ20542 [Homo sapiens]
gi|117645260|emb|CAL38096.1| hypothetical protein [synthetic construct]
gi|208966056|dbj|BAG73042.1| cleavage and polyadenylation specific factor 3-like [synthetic
construct]
Length = 600
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHSTQAICPILLEDYRKIAVD 113
>gi|404330601|ref|ZP_10971049.1| beta-lactamase [Sporolactobacillus vineae DSM 21990 = SL153]
Length = 902
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHVHHIDAVL 59
+K+T L G + C +Q+ +++D G D M + + +L + A+L
Sbjct: 1 MKVTILGGGNEIGASCTYIQIGGTSLIVDAGMRVHGDDVMPATGMLDQLDKPA----AIL 56
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+++ H+GALP ++ + PIFAT P + Q+ M+D F++
Sbjct: 57 VTHAHADHIGALP-VIHRIYPDVPIFATPPTADLMQIMMHDSFKI 100
>gi|392961179|ref|ZP_10326641.1| Beta-Casp domain-containing protein [Pelosinus fermentans DSM
17108]
gi|421055169|ref|ZP_15518133.1| Beta-Casp domain-containing protein [Pelosinus fermentans B4]
gi|421057282|ref|ZP_15520145.1| Beta-Casp domain-containing protein [Pelosinus fermentans B3]
gi|421063905|ref|ZP_15525839.1| Beta-Casp domain-containing protein [Pelosinus fermentans A12]
gi|421072049|ref|ZP_15533162.1| RNA-metabolising metallo-beta-lactamase [Pelosinus fermentans
A11]
gi|392440272|gb|EIW17960.1| Beta-Casp domain-containing protein [Pelosinus fermentans B4]
gi|392446637|gb|EIW23922.1| RNA-metabolising metallo-beta-lactamase [Pelosinus fermentans
A11]
gi|392454105|gb|EIW30950.1| Beta-Casp domain-containing protein [Pelosinus fermentans DSM
17108]
gi|392462058|gb|EIW38177.1| Beta-Casp domain-containing protein [Pelosinus fermentans A12]
gi|392463481|gb|EIW39414.1| Beta-Casp domain-containing protein [Pelosinus fermentans B3]
Length = 533
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 18/93 (19%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS----------MDFVKELKRHVHH 54
+K+T L + YLL+VD KIL+DCG MF DF+ +
Sbjct: 1 MKLTFLGAAKIVTGSSYLLEVDTQKILIDCG---MFQGSKTITAFNRRDFLYDPTA---- 53
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
ID VLL++ + H G LP + K G PI+AT
Sbjct: 54 IDCVLLTHAHIDHSGLLPKLC-KSGFKGPIYAT 85
>gi|19112240|ref|NP_595448.1| cleavage factor two Cft2/polyadenylation factor CPSF-73 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74582548|sp|O74740.1|CFT2_SCHPO RecName: Full=Cleavage factor two protein 2
gi|3738153|emb|CAA21254.1| cleavage factor two Cft2/polyadenylation factor CPSF-73 (predicted)
[Schizosaccharomyces pombe]
Length = 797
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 23 LQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL-S 81
+++D I +D G D+ V E D +LLS+ D+AH+G L Y K +
Sbjct: 18 IELDGIHIYIDPGSDDSLKHPEVPE------QPDLILLSHSDLAHIGGLVYAYYKYDWKN 71
Query: 82 CPIFATIPVYKMGQMFMYDLFQVRY 106
I+AT+P MG+M M D + Y
Sbjct: 72 AYIYATLPTINMGRMTMLDAIKSNY 96
>gi|148547684|ref|YP_001267786.1| beta-lactamase domain-containing protein [Pseudomonas putida F1]
gi|395449495|ref|YP_006389748.1| beta-lactamase domain-containing protein [Pseudomonas putida ND6]
gi|397698313|ref|YP_006536196.1| beta-lactamase domain-containing protein [Pseudomonas putida
DOT-T1E]
gi|421521140|ref|ZP_15967799.1| beta-lactamase domain-containing protein [Pseudomonas putida LS46]
gi|148511742|gb|ABQ78602.1| beta-lactamase domain protein [Pseudomonas putida F1]
gi|388563492|gb|AFK72633.1| beta-lactamase domain-containing protein [Pseudomonas putida ND6]
gi|397335043|gb|AFO51402.1| beta-lactamase domain-containing protein [Pseudomonas putida
DOT-T1E]
gi|402755080|gb|EJX15555.1| beta-lactamase domain-containing protein [Pseudomonas putida LS46]
Length = 455
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKE---LKRHVHHIDAVLLS 61
+++T L GT + +LL D ++L+DCG + F ++ L + +DAV+L+
Sbjct: 1 MQLTFLGGTGTVTGSKFLLTRDSTRVLVDCGLFQGFKQLRLRNWQPLPPALRALDAVVLT 60
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ + H G LP +V + G PI+AT + ++ + D
Sbjct: 61 HAHLDHSGYLPVLV-REGYRGPIYATPATCALAEILLLD 98
>gi|407769517|ref|ZP_11116892.1| metallo-beta-lactamase [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407287439|gb|EKF12920.1| metallo-beta-lactamase [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 526
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 20 CYLLQVDEFKILLDCGWDEMFS-MDFVKELKR-----HVHHIDAVLLSYPDVAHLGALPY 73
CYLL+ D I++DCG MF V+EL I VLL++ + H G LP
Sbjct: 18 CYLLRTDGGDIIVDCG---MFQGSKTVRELNYGAFPFKAADIRGVLLTHAHIDHSGLLPK 74
Query: 74 MVGKCGLSCPIFATIP 89
+V K G + PI+AT P
Sbjct: 75 LV-KAGFNGPIYATEP 89
>gi|307610917|emb|CBX00534.1| metallo-beta lactamase family [Legionella pneumophila 130b]
Length = 453
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKE---LKRHVHHIDAVLLS 61
+K+T L T + YLL VD KIL+DCG + + ++ L + IDAV+++
Sbjct: 1 MKLTFLGATETVTGSKYLLTVDSKKILIDCGLFQGYKELRLRNWAPLPVNPRDIDAVIIT 60
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ + H G LP ++ K G I+AT + + + D
Sbjct: 61 HAHIDHTGYLPLLI-KNGFQGKIYATTGTKALCSILLPD 98
>gi|26990009|ref|NP_745434.1| metallo-beta-lactamase [Pseudomonas putida KT2440]
gi|24984930|gb|AAN68898.1|AE016521_7 metallo-beta-lactamase family protein [Pseudomonas putida KT2440]
Length = 455
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKE---LKRHVHHIDAVLLS 61
+++T L GT + +LL D ++L+DCG + F ++ L + +DAV+L+
Sbjct: 1 MQLTFLGGTGTVTGSKFLLTRDSTRVLVDCGLFQGFKQLRLRNWQPLPPALRALDAVVLT 60
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ + H G LP +V + G PI+AT + ++ + D
Sbjct: 61 HAHLDHSGYLPVLV-REGYRGPIYATPATCALAEILLLD 98
>gi|327405168|ref|YP_004346006.1| RNA-metabolising metallo-beta-lactamase [Fluviicola taffensis DSM
16823]
gi|327320676|gb|AEA45168.1| RNA-metabolising metallo-beta-lactamase [Fluviicola taffensis DSM
16823]
Length = 462
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 8/100 (8%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFVKELKRHVHHIDAVLL 60
I+ +GT+ S YL+++ + K+L+DCG E+ +++ + L V +DAV+L
Sbjct: 7 IQFLGAAGTVTGSK--YLIELIDQKLLIDCGLFQGLKELRLLNW-QSLPFDVASLDAVIL 63
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
++ + H+G LP +V K G I+AT P ++ ++ + D
Sbjct: 64 THGHLDHVGYLPLLV-KQGFKGKIYATEPTIEIAKLILQD 102
>gi|255524630|ref|ZP_05391583.1| beta-lactamase domain protein [Clostridium carboxidivorans P7]
gi|255511654|gb|EET87941.1| beta-lactamase domain protein [Clostridium carboxidivorans P7]
Length = 827
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELK--RHVHHIDAVLLSY 62
+K++ L G + C LL++ ILLDCG + S D + + + + IDA+++S+
Sbjct: 1 MKISFLGGAHEVGGSCILLKIYNKNILLDCGIRQGASKDPLPDFRTIQEQGGIDAIIISH 60
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ H+G+LP ++ K I+A + ++ +YD ++
Sbjct: 61 AHMDHIGSLP-IISKEYPGAKIYANNMTKDLMKVLLYDSLKI 101
>gi|288572942|ref|ZP_06391299.1| beta-lactamase domain protein [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288568683|gb|EFC90240.1| beta-lactamase domain protein [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 601
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
++ L G + YLL+ E I++DCG +EM +DFV L+ + +
Sbjct: 52 LRFIPLGGIGEIGKNMYLLEFGEDMIVIDCGLMFPEEEMLGIDFVIPDTTYLEANKDRVK 111
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+LL++ H+GALP+++ GL P++ T
Sbjct: 112 GILLTHGHEDHVGALPFVLP--GLDVPVYGT 140
>gi|227537735|ref|ZP_03967784.1| beta-lactamase family protein [Sphingobacterium spiritivorum ATCC
33300]
gi|227242349|gb|EEI92364.1| beta-lactamase family protein [Sphingobacterium spiritivorum ATCC
33300]
Length = 458
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKE---LKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
YL+ + KIL+DCG + +K L V ID VLL++ + H G LP +V K
Sbjct: 22 YLVDTGDRKILIDCGLFQGLKELRLKNWEYLPVEVSKIDVVLLTHGHLDHTGYLPRLV-K 80
Query: 78 CGLSCPIFATIPVYKMGQMFMYDLFQVR 105
G + PI+ T P + ++ + D +++
Sbjct: 81 QGYNGPIYGTNPTLDIAKIILNDSAKIQ 108
>gi|120597438|ref|YP_962012.1| beta-lactamase domain-containing protein [Shewanella sp. W3-18-1]
gi|120557531|gb|ABM23458.1| beta-lactamase domain protein [Shewanella sp. W3-18-1]
Length = 478
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH------VHHIDAVLLSYP 63
L T + + C+LL VD +LLDCG + D EL+ H I AV+LS+
Sbjct: 6 LGATREVTGSCHLLSVDHEHLLLDCGLIQGGKED---ELRNHDPFTFEPESISAVVLSHA 62
Query: 64 DVAHLGALPYMVGKCGLSCPIF 85
+ H G LP +V K G PI+
Sbjct: 63 HIDHSGRLPLLV-KSGFDGPIY 83
>gi|349579985|dbj|GAA25146.1| K7_Ysh1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 779
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDA 57
T+ K SL G+ + C++LQ ++LD G + + S+ F E + +D
Sbjct: 6 TTTFKFFSLGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFD--LSKVDI 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+L+S+ + H +LPY++ + +F T P + + + D +V
Sbjct: 64 LLISHFHLDHAASLPYVMQRTNFQGKVFMTHPTKAIYRWLLRDFVRV 110
>gi|299822917|ref|ZP_07054803.1| metallo-beta-lactamase [Listeria grayi DSM 20601]
gi|299816446|gb|EFI83684.1| metallo-beta-lactamase [Listeria grayi DSM 20601]
Length = 555
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHIDAVLLS 61
L G + Y++++DE +LD G DE+ +D V K L+ + + A+ LS
Sbjct: 14 LGGVDENGKNLYIVEIDEDIFILDAGLKFPEDELLGIDVVIPDFKYLEENKDRVKAIFLS 73
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTF 109
+ +GALPY++ K + P++ T + + M L ++R+ F
Sbjct: 74 HGHEDAIGALPYLLQK--VKAPVYGTELTIALAKSAMKALPKLRFRNF 119
>gi|159041038|ref|YP_001540290.1| beta-lactamase domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157919873|gb|ABW01300.1| beta-lactamase domain protein [Caldivirga maquilingensis IC-167]
Length = 636
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD---FVKELKRHVHHIDAVLLS 61
+K+T L + L++ E ++LLD G MD F + V ++DAV++S
Sbjct: 180 VKVTCLGACFEVGRSALLIETSESRVLLDAGVKPSGGMDEAPFFDVID--VDNLDAVVIS 237
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ + H+G LPY+ K G P++ T P + ++ + D
Sbjct: 238 HAHLDHIGMLPYLY-KYGYKGPVYMTEPTKYLMEILLTD 275
>gi|253580435|ref|ZP_04857700.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848165|gb|EES76130.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 538
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+K+T + T + + CY L+ K L+DCG ++ E+ + I+ VLL++
Sbjct: 1 MKITFIGATHEVTGSCYYLEAAGHKFLVDCGMEQGPDYYENAEIPVALGEIEFVLLTHAH 60
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ H G LP + K G P++AT + + + D
Sbjct: 61 IDHSGNLPAIYAK-GFRGPVYATDATSHLCDIMLRD 95
>gi|146294421|ref|YP_001184845.1| beta-lactamase domain-containing protein [Shewanella putrefaciens
CN-32]
gi|145566111|gb|ABP77046.1| beta-lactamase domain protein [Shewanella putrefaciens CN-32]
Length = 478
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH------VHHIDAVLLSYP 63
L T + + C+LL VD +LLDCG + D EL+ H I AV+LS+
Sbjct: 6 LGATREVTGSCHLLSVDHEHLLLDCGLIQGGKED---ELRNHDPFTFEPESISAVVLSHA 62
Query: 64 DVAHLGALPYMVGKCGLSCPIF 85
+ H G LP +V K G PI+
Sbjct: 63 HIDHSGRLPLLV-KSGFDGPIY 83
>gi|332142651|ref|YP_004428389.1| Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase
[Alteromonas macleodii str. 'Deep ecotype']
gi|327552673|gb|AEA99391.1| Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase
[Alteromonas macleodii str. 'Deep ecotype']
Length = 471
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 14/88 (15%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKRH------VHHIDAVLLSYPDVAHLGALPYM 74
+LL+ + +LLDCG ++ +E K H V +DAV+LS+ + H G LP +
Sbjct: 18 HLLKTEHSTLLLDCG---LYQGRRDEEAKNHEPLPIDVSQVDAVILSHAHLDHSGRLPIL 74
Query: 75 V--GKCGLSCPIFATIPVYKMGQMFMYD 100
+ G CG PI+ T P ++ ++ + D
Sbjct: 75 LREGYCG---PIYMTRPTVELIEVLLKD 99
>gi|298682255|gb|ADI95318.1| beta-lactamase domain-containing protein, partial [Pseudomonas
putida DOT-T1E]
Length = 251
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKE---LKRHVHHIDAVLLS 61
+++T L GT + +LL D ++L+DCG + F ++ L + +DAV+L+
Sbjct: 1 MQLTFLGGTGTVTGSKFLLTRDSTRVLVDCGLFQGFKQLRLRNWQPLPPALRALDAVVLT 60
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ + H G LP +V + G PI+AT + ++ + D
Sbjct: 61 HAHLDHSGYLPVLV-REGYRGPIYATPATCALAEILLLD 98
>gi|288574417|ref|ZP_06392774.1| beta-lactamase domain protein [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570158|gb|EFC91715.1| beta-lactamase domain protein [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 533
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHH-----IDAVL 59
+++ L + + Y+L+V +IL+DCG + + D E R H +D VL
Sbjct: 1 MRLKVLGAAEEVTGSSYMLEVAGHRILIDCGLHQGRNED---ERNREPFHFDPLSLDVVL 57
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
L++ + H G +P +V K G S + +T+P ++ ++ D
Sbjct: 58 LTHAHIDHTGRVPLLV-KQGFSGKVMSTLPTVELTEVLWRD 97
>gi|406885873|gb|EKD32986.1| hypothetical protein ACD_76C00106G0027 [uncultured bacterium]
Length = 448
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW---DEMFSMDFVKELKRHVHHIDAVLLS 61
+K+T L T + + YLL+ ++ +IL+DCG ++ + + + +DAV L+
Sbjct: 1 MKLTFLGSTDEVTGSRYLLETEKARILIDCGLFQSEKCCEANNAEPMGFDASKLDAVFLT 60
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ H G LP +V K G + I+ T P + ++ + D +++
Sbjct: 61 HAHADHSGLLPRLV-KEGYAGAIYMTEPTIGLTKLILDDSYEI 102
>gi|381189248|ref|ZP_09896798.1| metallo-beta-lactamase family protein, RNA-specific [Flavobacterium
frigoris PS1]
gi|379648728|gb|EIA07313.1| metallo-beta-lactamase family protein, RNA-specific [Flavobacterium
frigoris PS1]
Length = 342
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 14/93 (15%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELK--------RHVHHIDAVLLSYPDVAHLGALP 72
YL+ + KIL+DCG +F +KEL+ +V ID VLL++ + H G LP
Sbjct: 22 YLVDTGDKKILIDCG---LFQG--LKELRLKNWEYPPVNVSDIDIVLLTHGHMDHTGYLP 76
Query: 73 YMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
+V K G + PI+ T P + ++ + D +++
Sbjct: 77 RLV-KQGFNGPIYGTNPTLDIAKIILNDSAKIQ 108
>gi|148360321|ref|YP_001251528.1| metallo-beta lactamase family transporter protein [Legionella
pneumophila str. Corby]
gi|296106617|ref|YP_003618317.1| metallo-beta-lactamase family protein [Legionella pneumophila
2300/99 Alcoy]
gi|148282094|gb|ABQ56182.1| metallo-beta lactamase family [Legionella pneumophila str. Corby]
gi|295648518|gb|ADG24365.1| metallo-beta-lactamase family protein [Legionella pneumophila
2300/99 Alcoy]
Length = 453
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH--------VHHID 56
+K+T L T + YLL + KIL+DCG + + KEL+ H ID
Sbjct: 1 MKLTFLGATQTVTGSKYLLTIGSKKILIDCGLFQGY-----KELRLRNWAPLPIDPHDID 55
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
AV++++ + H G LP +V K G I+AT
Sbjct: 56 AVIITHAHIDHTGYLPLLV-KNGFQGKIYAT 85
>gi|429966183|gb|ELA48180.1| hypothetical protein VCUG_00418 [Vavraia culicis 'floridensis']
Length = 647
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 22 LLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLS 81
LL++D +KIL++ G D +D++ EL+R + ID +L+ + ++ ++G LP + +
Sbjct: 23 LLEIDTYKILINIGSDPFLKVDYLAELERIIDDIDCILICHAELKYIGGLPSLGER--FK 80
Query: 82 CPIFATIPVYKMGQMFMYDL 101
++ ++PV+ +G++ + ++
Sbjct: 81 GKLYCSVPVHTLGRLMVSEV 100
>gi|374327735|ref|YP_005085935.1| mRNA 3'-end processing factor [Pyrobaculum sp. 1860]
gi|356643004|gb|AET33683.1| mRNA 3'-end processing factor, conjectural [Pyrobaculum sp. 1860]
Length = 644
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFS-MDFVKELKRHVHHIDAV 58
I +T L M+ L+ E +LLDCG +DE F +D V + +DAV
Sbjct: 184 ITVTFLGAAMEVGRSAILVSTTESNVLLDCGLKPGQYDEDFPLLDLVD-----IDKLDAV 238
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
+L++ + H+G LP + K G P++ T P + + D +++
Sbjct: 239 VLTHAHMDHVGCLPLLF-KYGYRGPVYMTDPTKYQAFILLSDYVELK 284
>gi|153955532|ref|YP_001396297.1| hypothetical protein CKL_2915 [Clostridium kluyveri DSM 555]
gi|219855928|ref|YP_002473050.1| hypothetical protein CKR_2585 [Clostridium kluyveri NBRC 12016]
gi|146348390|gb|EDK34926.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219569652|dbj|BAH07636.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 832
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELK--RHVHHIDAVLLSY 62
+ ++ L G + C L+++ IL+DCG + S D + + K + IDA+++S+
Sbjct: 5 MNISFLGGAREVGGSCILVKIYNRNILMDCGIRQSSSKDALPDFKSIQEQGGIDAIIISH 64
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ H+G+LP + + L+ I+AT + ++ +YD ++
Sbjct: 65 SHMDHIGSLPIISKEYPLA-RIYATKMTKDLMRVLLYDSLKI 105
>gi|433656047|ref|YP_007299755.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433294236|gb|AGB20058.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 820
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELK--RHVHHIDAVLLSY 62
+K+ G + CYL+ +D ILLDCG S D + + + + +D +++S+
Sbjct: 1 MKLYFCGGASEVGASCYLVNIDGKNILLDCGIRMSSSKDNLPDFQLIQENGGVDVIVISH 60
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ H+GALP ++ + I+ T + ++ +YD ++
Sbjct: 61 AHMDHIGALP-IISRIYPDAKIYMTHAAKDLTRVLLYDSLKI 101
>gi|48477759|ref|YP_023465.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Picrophilus torridus DSM 9790]
gi|48430407|gb|AAT43272.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Picrophilus torridus DSM 9790]
Length = 638
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG----------WDEMFSMDFVKELKRHVHH 54
I++T+L G + L+ + KIL+DCG W+E + +V E++
Sbjct: 179 IRITALGGHREVGRSATLISTNNSKILVDCGMINVNDPDHPWEEAPYL-YVPEIQP-FSS 236
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
+DAV+L++ + H G +P ++ K G P++ T P + + D +V +
Sbjct: 237 LDAVILTHAHLDHSGLVP-LLYKYGYDGPLYTTAPTRDLAALLQNDYIKVAH 287
>gi|397665132|ref|YP_006506670.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
gi|395128543|emb|CCD06759.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
Length = 453
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH--------VHHID 56
+K+T L T + YLL +D KIL+DCG + + KEL+ ID
Sbjct: 1 MKLTFLGATQTVTGSKYLLTIDSKKILIDCGLFQGY-----KELRLRNWASLPIDPRDID 55
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
AV++++ + H G LP +V K G I+AT
Sbjct: 56 AVIITHAHIDHTGYLPLLV-KNGFQGKIYAT 85
>gi|163790852|ref|ZP_02185277.1| metallo-beta-lactamase superfamily protein [Carnobacterium sp. AT7]
gi|159873920|gb|EDP67999.1| metallo-beta-lactamase superfamily protein [Carnobacterium sp. AT7]
Length = 559
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y ++VDE +LDCG E+ +D V L+ + +
Sbjct: 2 STIKIIPLGGVRENGKNMYAVEVDEDIFVLDCGLMYPETELLGIDVVIPDFSYLEENRNR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
+ V L++ +GALPY + K P+F T + ++F+
Sbjct: 62 VTGVFLTHGHEDAIGALPYFLQK--FDVPVFGTELTIALAKLFV 103
>gi|344204142|ref|YP_004789285.1| beta-lactamase domain-containing protein [Muricauda ruestringensis
DSM 13258]
gi|343956064|gb|AEM71863.1| beta-lactamase domain protein [Muricauda ruestringensis DSM 13258]
Length = 456
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 16/109 (14%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH--------VHHID 56
I SGT+ S + L+ +E KIL+DCG +F VKEL++ V ID
Sbjct: 6 IHFLGASGTVTGSK--FYLETEEVKILVDCG---LFQG--VKELRKQNWERLPIDVSEID 58
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
VLL++ + H G LP +V + G I T P ++ ++ + D +++
Sbjct: 59 YVLLTHGHLDHCGYLPLLV-RQGFRGKILGTGPTLEIARIILEDSAKIQ 106
>gi|170595519|ref|XP_001902415.1| RNA-metabolising metallo-beta-lactamase family protein [Brugia
malayi]
gi|158589929|gb|EDP28737.1| RNA-metabolising metallo-beta-lactamase family protein [Brugia
malayi]
Length = 589
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS-------MDFVKELKRHVHHIDA 57
IK+ L D C L+ + ++LDCG +S F+ +D
Sbjct: 4 IKVVPLGAGRDVGRSCILVSIGGRNVMLDCGMHMGYSDERRFPDFSFINGGGSLTEFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
V++++ + H G+LP+M G PI+ T P + + + D +V+
Sbjct: 64 VIITHFHLDHCGSLPHMSEVVGYDGPIYMTYPTKAIAPVLLEDYRKVQ 111
>gi|170722201|ref|YP_001749889.1| beta-lactamase domain-containing protein [Pseudomonas putida W619]
gi|169760204|gb|ACA73520.1| beta-lactamase domain protein [Pseudomonas putida W619]
Length = 455
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKE---LKRHVHHIDAVLLS 61
+++T GT + +LL D ++L+DCG + + ++ L + +DAV+L+
Sbjct: 1 MQLTFFGGTGTVTGSKFLLTHDSTRVLIDCGLFQGYKQLRLRNWEPLPTALRTVDAVVLT 60
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ + H G LP +V + G S P++AT + ++ + D
Sbjct: 61 HAHLDHSGYLPVLV-REGFSGPVYATPATCALAEILLLD 98
>gi|320581695|gb|EFW95914.1| Ca2+/calmodulin-dependent protein kinase [Ogataea parapolymorpha
DL-1]
Length = 1184
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 22 LLQVD-EFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL 80
LL D + IL D GWD + + + L+ H+ +I ++LS +LGA Y++ K +
Sbjct: 59 LLTFDGQLNILADPGWDGVSDISY---LEPHIPNIHLIILSQTTTEYLGAFAYLLYKYPI 115
Query: 81 --SCPIFATIPVYKMGQMFMYDLFQ 103
+AT+PV K+G++ +L++
Sbjct: 116 LRKVKTYATLPVSKLGRLATIELYR 140
>gi|330836718|ref|YP_004411359.1| beta-lactamase domain-containing protein [Sphaerochaeta coccoides
DSM 17374]
gi|329748621|gb|AEC01977.1| beta-lactamase domain protein [Sphaerochaeta coccoides DSM 17374]
Length = 560
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 20 CYLLQVDEFKILLDCGW----DEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMV 75
C++L D IL+DCG DE D EL +D +LL++ + H G +P +V
Sbjct: 16 CFMLSADGMNILIDCGLAQGTDERVQGD---ELPFKAETVDVMLLTHAHIDHSGRIPLLV 72
Query: 76 GKCGLSCPIFATIPVYKMGQMFMYD 100
K G S I+AT + ++ + D
Sbjct: 73 -KEGFSGAIYATEATRNLCEIMLAD 96
>gi|325289911|ref|YP_004266092.1| RNA-metabolising metallo-beta-lactamase [Syntrophobotulus
glycolicus DSM 8271]
gi|324965312|gb|ADY56091.1| RNA-metabolising metallo-beta-lactamase [Syntrophobotulus
glycolicus DSM 8271]
Length = 554
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 12/83 (14%)
Query: 11 SGTMDESPPCYLLQVDEFKILLDCGWDEMFS-MDFVKELKR-----HVHHIDAVLLSYPD 64
SGT+ S CYL++ F+IL+DCG MF +KEL IDAV+L++
Sbjct: 9 SGTVTGS--CYLVEASGFRILIDCG---MFQGSKIIKELNYGDFPFDPLSIDAVILTHAH 63
Query: 65 VAHLGALPYMVGKCGLSCPIFAT 87
+ H G +P ++ K G + ++AT
Sbjct: 64 IDHSGLIPKLI-KSGYNGKVYAT 85
>gi|320335819|ref|YP_004172530.1| beta-lactamase domain-containing protein [Deinococcus maricopensis
DSM 21211]
gi|319757108|gb|ADV68865.1| beta-lactamase domain protein [Deinococcus maricopensis DSM 21211]
Length = 483
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH-----VHHIDAVL 59
+ +TS + C+LL+V ++L+DCG + D ++ L R V +DAVL
Sbjct: 1 MHLTSFGAAETVTGSCHLLEVAGTRVLIDCGLYQ--GDDDLEALNREPFPFDVRSLDAVL 58
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTF 109
L++ + H+G LP + + G PI+ T + + + D +++ + +
Sbjct: 59 LTHAHLDHVGRLPVLT-RLGYRGPIYCTPATAALAGIVLLDSARLQVEDY 107
>gi|255721479|ref|XP_002545674.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240136163|gb|EER35716.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 870
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 12 GTMDESPPCYLLQVD-EFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGA 70
GT D S LL+ D EFKIL D W+ + +D V +++H+ ID +LLS+ +
Sbjct: 10 GTNDHSFKAGLLEFDNEFKILTDPSWNGV-DVDSVLFIEQHLKEIDVILLSHSTEEFISG 68
Query: 71 LPYMVGK---CGLSCPIFATIPVYKMGQM 96
+ K + PI++T+PV ++G++
Sbjct: 69 FMLLCIKFPNLMSTIPIYSTLPVNQLGRV 97
>gi|219121689|ref|XP_002181194.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407180|gb|EEC47117.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 602
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDC----GWDEMFSMDFVKELKRHVHHID 56
M I+ +T L + C+LL+ ILLDC G+D + + ++ ++ +D
Sbjct: 1 MEDIMSITPLGSGQEVGRSCHLLEFRGMTILLDCGIHPGYDGLNGLPYLDRIEP--DQVD 58
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIP 89
+L+++ + H+ +LPY+ + IF T P
Sbjct: 59 VLLITHFHLDHVASLPYLTERTSFKGRIFMTHP 91
>gi|379011607|ref|YP_005269419.1| RNA-metabolising metallo-beta-lactamase [Acetobacterium woodii DSM
1030]
gi|375302396|gb|AFA48530.1| RNA-metabolising metallo-beta-lactamase [Acetobacterium woodii DSM
1030]
Length = 545
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVH-----HIDAVL 59
+K+ L + + C+L+ D +K LLDCG + + ++EL H ID ++
Sbjct: 1 MKIKFLGAAISVTGSCHLVTTDRYKFLLDCGLFQ--GSEVLEELNEHEFDFDPAEIDFMI 58
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
LS+ + H G +P ++ K G I+ T ++ + + D
Sbjct: 59 LSHAHIDHCGRIPLLIKK-GFKGAIYCTGATAEIADIMLQD 98
>gi|424874960|ref|ZP_18298622.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393170661|gb|EJC70708.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 544
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 20 CYLLQVDEFKILLDCGWDEMFS-------MDFVKELKRHVHHIDAVLLSYPDVAHLGALP 72
C+LL+ +IL+DCG MF +++ K IDAVLL++ + H G LP
Sbjct: 19 CFLLEAGGTRILIDCG---MFQGSKSEKELNY-KPFPFEPAQIDAVLLTHAHIDHSGLLP 74
Query: 73 YMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ K G PIFAT + + + D
Sbjct: 75 KL-AKAGYGGPIFATAATIDLCTIMLQD 101
>gi|441506137|ref|ZP_20988114.1| Metallo-beta-lactamase family protein, RNA-specific [Photobacterium
sp. AK15]
gi|441426276|gb|ELR63761.1| Metallo-beta-lactamase family protein, RNA-specific [Photobacterium
sp. AK15]
Length = 470
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79
C+ +++ + IL+DCG + +++ ++HI A+LL++ + H+G LP+++ G
Sbjct: 24 CHEIKIGNYGILVDCGLFQGEESGGPLDIEFPINHIQALLLTHCHIDHVGRLPWLLA-AG 82
Query: 80 LSCPIFATIPVYKMGQMFMYDLFQV 104
PI+AT + M + D ++
Sbjct: 83 FRGPIYATEATAALLPMMLEDGLKI 107
>gi|284047926|ref|YP_003398265.1| RNA-metabolising metallo-beta-lactamase [Acidaminococcus fermentans
DSM 20731]
gi|283952147|gb|ADB46950.1| RNA-metabolising metallo-beta-lactamase [Acidaminococcus fermentans
DSM 20731]
Length = 535
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS-MDFVKELKR-----HVHHIDAV 58
+K+T L + C+LL+V+ KILLDCG MF +++L R + IDAV
Sbjct: 1 MKITFLGADKIVTGSCHLLEVNGKKILLDCG---MFQGPKLIRDLNRKPFSFNPGEIDAV 57
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+LS+ + H G LP ++ K G I T ++ Q+ + D
Sbjct: 58 ILSHAHIDHSGLLPRLI-KEGFKGFIHCTPVTEELCQILLPD 98
>gi|397666698|ref|YP_006508235.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
gi|395130109|emb|CCD08342.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
Length = 453
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH--------VHHID 56
+K+T L T + YLL V KIL+DCG + + KEL+ H ID
Sbjct: 1 MKLTFLGATETVTGSKYLLTVGSKKILIDCGLFQGY-----KELRLRNWAPLPIDPHDID 55
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
AV++++ + H G LP +V K G I+AT
Sbjct: 56 AVIITHAHIDHTGYLPLLV-KNGFQGKIYAT 85
>gi|449460766|ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Cucumis sativus]
Length = 649
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHVHH--IDAVLLSY 62
L + C ++ ++ +I+ DCG D DF + H ++ + +++++
Sbjct: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASHDYNNVLSCIIITH 67
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
+ H+GALPY CG + PI+ T P + + + D +V D
Sbjct: 68 FHLDHIGALPYFTEVCGYNGPIYMTYPTMALAPITLEDYRKVMVD 112
>gi|397171688|ref|ZP_10495087.1| metallo-beta-lactamase superfamily protein [Alishewanella
aestuarii B11]
gi|396086696|gb|EJI84307.1| metallo-beta-lactamase superfamily protein [Alishewanella
aestuarii B11]
Length = 468
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKR-----HVHHIDAVLLSYPDVAHLGALPYM 74
CYLL++++ + LLDCG + D V+E + IDAV+LS+ + H G LP +
Sbjct: 20 CYLLKMNQQQFLLDCGMVQ--GADQVREWHKFRFPFKPKDIDAVILSHAHIDHSGLLPLL 77
Query: 75 VGKCGLSCPIFAT 87
V K G I+ T
Sbjct: 78 VAK-GFGGKIYCT 89
>gi|41614872|ref|NP_963370.1| hypothetical protein NEQ076 [Nanoarchaeum equitans Kin4-M]
gi|40068596|gb|AAR38931.1| NEQ076 [Nanoarchaeum equitans Kin4-M]
Length = 635
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMF------SMDFVKELKRHVHHIDAV 58
++++ L G LLQ E +ILLD G D + V+ + V +DAV
Sbjct: 189 VRVSFLGGASQVGRSALLLQTKESRILLDFGVDLSLPPNNKNAYPIVELPEFDVKELDAV 248
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLL 113
++++ + H+G +P++ K G P++ T P + + + D ++ + +KL
Sbjct: 249 VITHAHLDHVGFVPFLY-KMGYKGPVYLTPPTLDIATLSLLDYLRIANENNVKLF 302
>gi|6323307|ref|NP_013379.1| Ysh1p [Saccharomyces cerevisiae S288c]
gi|74644951|sp|Q06224.1|YSH1_YEAST RecName: Full=Endoribonuclease YSH1; AltName: Full=Yeast 73 kDa
homolog 1; AltName: Full=mRNA 3'-end-processing protein
YSH1
gi|577190|gb|AAB67367.1| Ysh1p: subunit of polyadenylation factor I (PF I) [Saccharomyces
cerevisiae]
gi|151940984|gb|EDN59365.1| cleavage factor II (CF II) component [Saccharomyces cerevisiae
YJM789]
gi|190405336|gb|EDV08603.1| hypothetical protein SCRG_04228 [Saccharomyces cerevisiae RM11-1a]
gi|256269831|gb|EEU05091.1| Ysh1p [Saccharomyces cerevisiae JAY291]
gi|285813694|tpg|DAA09590.1| TPA: Ysh1p [Saccharomyces cerevisiae S288c]
gi|323332373|gb|EGA73782.1| Ysh1p [Saccharomyces cerevisiae AWRI796]
Length = 779
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDA 57
T+ K SL G+ + C++LQ ++LD G + + S+ F E + +D
Sbjct: 6 TTTFKFFSLGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFD--LSKVDI 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+L+S+ + H +LPY++ + +F T P + + + D +V
Sbjct: 64 LLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRV 110
>gi|259148260|emb|CAY81507.1| Ysh1p [Saccharomyces cerevisiae EC1118]
Length = 779
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDA 57
T+ K SL G+ + C++LQ ++LD G + + S+ F E + +D
Sbjct: 6 TTTFKFFSLGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFD--LSKVDI 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+L+S+ + H +LPY++ + +F T P + + + D +V
Sbjct: 64 LLISHFHLDHAASLPYVMQRTNFEGRVFMTHPTKAIYRWLLRDFVRV 110
>gi|29375760|ref|NP_814914.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
V583]
gi|227552969|ref|ZP_03983018.1| metallo-beta-lactamase superfamily hydrolase [Enterococcus
faecalis HH22]
gi|255973098|ref|ZP_05423684.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
T1]
gi|256618768|ref|ZP_05475614.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
ATCC 4200]
gi|256762188|ref|ZP_05502768.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
T3]
gi|256958677|ref|ZP_05562848.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
DS5]
gi|256965415|ref|ZP_05569586.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
HIP11704]
gi|257077969|ref|ZP_05572330.1| metallo-beta-lactamase family hydrolase [Enterococcus faecalis
JH1]
gi|257085556|ref|ZP_05579917.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
Fly1]
gi|257086538|ref|ZP_05580899.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
D6]
gi|257089595|ref|ZP_05583956.1| metallo-beta-lactamase [Enterococcus faecalis CH188]
gi|257415802|ref|ZP_05592796.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
ARO1/DG]
gi|257419011|ref|ZP_05596005.1| metallo-beta-lactamase [Enterococcus faecalis T11]
gi|257422904|ref|ZP_05599894.1| metallo-beta-lactamase [Enterococcus faecalis X98]
gi|294781100|ref|ZP_06746450.1| conserved hypothetical protein [Enterococcus faecalis PC1.1]
gi|300860070|ref|ZP_07106158.1| putative Ribonuclease J 2 [Enterococcus faecalis TUSoD Ef11]
gi|312899656|ref|ZP_07758980.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
gi|312903935|ref|ZP_07763104.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
gi|384512921|ref|YP_005708014.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
OG1RF]
gi|397699566|ref|YP_006537354.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
D32]
gi|421512143|ref|ZP_15958956.1| Ribonuclease J2 (endoribonuclease in RNA processing)
[Enterococcus faecalis ATCC 29212]
gi|422688502|ref|ZP_16746650.1| conserved hypothetical protein [Enterococcus faecalis TX0630]
gi|422694665|ref|ZP_16752653.1| conserved hypothetical protein [Enterococcus faecalis TX4244]
gi|422703032|ref|ZP_16760860.1| conserved hypothetical protein [Enterococcus faecalis TX1302]
gi|422715017|ref|ZP_16771740.1| conserved hypothetical protein [Enterococcus faecalis TX0309A]
gi|422721213|ref|ZP_16777808.1| conserved hypothetical protein [Enterococcus faecalis TX0017]
gi|422722131|ref|ZP_16778707.1| conserved hypothetical protein [Enterococcus faecalis TX2137]
gi|422731347|ref|ZP_16787715.1| conserved hypothetical protein [Enterococcus faecalis TX0645]
gi|422738422|ref|ZP_16793617.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
gi|428766691|ref|YP_007152802.1| metallo-beta-lactamase family protein [Enterococcus faecalis str.
Symbioflor 1]
gi|430356576|ref|ZP_19425017.1| metallo-beta-lactamase superfamily hydrolase [Enterococcus
faecalis OG1X]
gi|430370372|ref|ZP_19429016.1| metallo-beta-lactamase superfamily hydrolase [Enterococcus
faecalis M7]
gi|29343221|gb|AAO80984.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
V583]
gi|227177939|gb|EEI58911.1| metallo-beta-lactamase superfamily hydrolase [Enterococcus
faecalis HH22]
gi|255964116|gb|EET96592.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
T1]
gi|256598295|gb|EEU17471.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
ATCC 4200]
gi|256683439|gb|EEU23134.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
T3]
gi|256949173|gb|EEU65805.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
DS5]
gi|256955911|gb|EEU72543.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
HIP11704]
gi|256985999|gb|EEU73301.1| metallo-beta-lactamase family hydrolase [Enterococcus faecalis
JH1]
gi|256993586|gb|EEU80888.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
Fly1]
gi|256994568|gb|EEU81870.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
D6]
gi|256998407|gb|EEU84927.1| metallo-beta-lactamase [Enterococcus faecalis CH188]
gi|257157630|gb|EEU87590.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
ARO1/DG]
gi|257160839|gb|EEU90799.1| metallo-beta-lactamase [Enterococcus faecalis T11]
gi|257164728|gb|EEU94688.1| metallo-beta-lactamase [Enterococcus faecalis X98]
gi|294451778|gb|EFG20230.1| conserved hypothetical protein [Enterococcus faecalis PC1.1]
gi|300850888|gb|EFK78637.1| putative Ribonuclease J 2 [Enterococcus faecalis TUSoD Ef11]
gi|310632655|gb|EFQ15938.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
gi|311293162|gb|EFQ71718.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
gi|315027738|gb|EFT39670.1| conserved hypothetical protein [Enterococcus faecalis TX2137]
gi|315031513|gb|EFT43445.1| conserved hypothetical protein [Enterococcus faecalis TX0017]
gi|315145496|gb|EFT89512.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
gi|315147667|gb|EFT91683.1| conserved hypothetical protein [Enterococcus faecalis TX4244]
gi|315162559|gb|EFU06576.1| conserved hypothetical protein [Enterococcus faecalis TX0645]
gi|315165402|gb|EFU09419.1| conserved hypothetical protein [Enterococcus faecalis TX1302]
gi|315578284|gb|EFU90475.1| conserved hypothetical protein [Enterococcus faecalis TX0630]
gi|315579800|gb|EFU91991.1| conserved hypothetical protein [Enterococcus faecalis TX0309A]
gi|327534810|gb|AEA93644.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
OG1RF]
gi|397336205|gb|AFO43877.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
D32]
gi|401674712|gb|EJS81057.1| Ribonuclease J2 (endoribonuclease in RNA processing)
[Enterococcus faecalis ATCC 29212]
gi|427184864|emb|CCO72088.1| metallo-beta-lactamase family protein [Enterococcus faecalis str.
Symbioflor 1]
gi|429514144|gb|ELA03697.1| metallo-beta-lactamase superfamily hydrolase [Enterococcus
faecalis OG1X]
gi|429515513|gb|ELA05027.1| metallo-beta-lactamase superfamily hydrolase [Enterococcus
faecalis M7]
Length = 562
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V++ +LDCG +E+ +D V L+ +
Sbjct: 2 STIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPDFTYLEENSER 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY++ K + P+F T
Sbjct: 62 IAGVFLTHGHADAIGALPYLLSK--IQVPVFGT 92
>gi|424692085|ref|ZP_18128599.1| hypothetical protein HMPREF1332_03055 [Enterococcus faecalis
ERV31]
gi|424693219|ref|ZP_18129665.1| hypothetical protein HMPREF1333_00966 [Enterococcus faecalis
ERV37]
gi|424697475|ref|ZP_18133802.1| hypothetical protein HMPREF1334_01849 [Enterococcus faecalis
ERV41]
gi|424703611|ref|ZP_18139744.1| hypothetical protein HMPREF1336_01283 [Enterococcus faecalis
ERV63]
gi|424712247|ref|ZP_18144439.1| hypothetical protein HMPREF1337_02661 [Enterococcus faecalis
ERV65]
gi|424725894|ref|ZP_18154583.1| hypothetical protein HMPREF1340_03068 [Enterococcus faecalis
ERV73]
gi|424739660|ref|ZP_18168077.1| hypothetical protein HMPREF1342_01188 [Enterococcus faecalis
ERV85]
gi|402360610|gb|EJU95206.1| hypothetical protein HMPREF1332_03055 [Enterococcus faecalis
ERV31]
gi|402374704|gb|EJV08708.1| hypothetical protein HMPREF1333_00966 [Enterococcus faecalis
ERV37]
gi|402376025|gb|EJV09995.1| hypothetical protein HMPREF1334_01849 [Enterococcus faecalis
ERV41]
gi|402381283|gb|EJV14992.1| hypothetical protein HMPREF1337_02661 [Enterococcus faecalis
ERV65]
gi|402384486|gb|EJV18038.1| hypothetical protein HMPREF1336_01283 [Enterococcus faecalis
ERV63]
gi|402390237|gb|EJV23592.1| hypothetical protein HMPREF1340_03068 [Enterococcus faecalis
ERV73]
gi|402402931|gb|EJV35627.1| hypothetical protein HMPREF1342_01188 [Enterococcus faecalis
ERV85]
Length = 565
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V++ +LDCG +E+ +D V L+ +
Sbjct: 5 STIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPDFTYLEENSER 64
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY++ K + P+F T
Sbjct: 65 IAGVFLTHGHADAIGALPYLLSK--IQVPVFGT 95
>gi|422868134|ref|ZP_16914682.1| ribonuclease J 2 [Enterococcus faecalis TX1467]
gi|329576551|gb|EGG58058.1| ribonuclease J 2 [Enterococcus faecalis TX1467]
Length = 494
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V++ +LDCG +E+ +D V L+ +
Sbjct: 5 STIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPDFTYLEENSER 64
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY++ K + P+F T
Sbjct: 65 IAGVFLTHGHADAIGALPYLLSK--IQVPVFGT 95
>gi|384518285|ref|YP_005705590.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
62]
gi|323480418|gb|ADX79857.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
62]
Length = 562
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V++ +LDCG +E+ +D V L+ +
Sbjct: 2 STIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPDFTYLEENSER 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY++ K + P+F T
Sbjct: 62 IAGVFLTHGHADAIGALPYLLSK--IQVPVFGT 92
>gi|422698757|ref|ZP_16756644.1| conserved hypothetical protein [Enterococcus faecalis TX1346]
gi|422736686|ref|ZP_16792949.1| conserved hypothetical protein [Enterococcus faecalis TX1341]
gi|424756192|ref|ZP_18184026.1| hypothetical protein HMPREF1344_00218 [Enterococcus faecalis
R508]
gi|315166604|gb|EFU10621.1| conserved hypothetical protein [Enterococcus faecalis TX1341]
gi|315172782|gb|EFU16799.1| conserved hypothetical protein [Enterococcus faecalis TX1346]
gi|402408699|gb|EJV41157.1| hypothetical protein HMPREF1344_00218 [Enterococcus faecalis
R508]
Length = 565
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V++ +LDCG +E+ +D V L+ +
Sbjct: 5 STIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPDFTYLEENSER 64
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY++ K + P+F T
Sbjct: 65 IAGVFLTHGHADAIGALPYLLSK--IQVPVFGT 95
>gi|422726679|ref|ZP_16783123.1| conserved hypothetical protein [Enterococcus faecalis TX0312]
gi|315158441|gb|EFU02458.1| conserved hypothetical protein [Enterococcus faecalis TX0312]
Length = 565
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V++ +LDCG +E+ +D V L+ +
Sbjct: 5 STIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPEFTYLEENSER 64
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY++ K + P+F T
Sbjct: 65 IAGVFLTHGHADAIGALPYLLSK--IQVPVFGT 95
>gi|422728050|ref|ZP_16784469.1| conserved hypothetical protein [Enterococcus faecalis TX0012]
gi|315151369|gb|EFT95385.1| conserved hypothetical protein [Enterococcus faecalis TX0012]
Length = 562
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V++ +LDCG +E+ +D V L+ +
Sbjct: 2 STIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPDFTYLEENSER 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY++ K + P+F T
Sbjct: 62 IAGVFLTHGHADAIGALPYLLSK--IQVPVFGT 92
>gi|293383252|ref|ZP_06629168.1| metallo-beta-lactamase family protein [Enterococcus faecalis
R712]
gi|291079430|gb|EFE16794.1| metallo-beta-lactamase family protein [Enterococcus faecalis
R712]
Length = 565
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V++ +LDCG +E+ +D V L+ +
Sbjct: 5 STIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPDFTYLEENSER 64
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY++ K + P+F T
Sbjct: 65 IAGVFLTHGHADAIGALPYLLSK--IQVPVFGT 95
>gi|257082858|ref|ZP_05577219.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
E1Sol]
gi|422701437|ref|ZP_16759277.1| conserved hypothetical protein [Enterococcus faecalis TX1342]
gi|256990888|gb|EEU78190.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
E1Sol]
gi|315169867|gb|EFU13884.1| conserved hypothetical protein [Enterococcus faecalis TX1342]
Length = 562
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V++ +LDCG +E+ +D V L+ +
Sbjct: 2 STIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPDFTYLEENSER 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY++ K + P+F T
Sbjct: 62 IAGVFLTHGHADAIGALPYLLSK--IQVPVFGT 92
>gi|256962225|ref|ZP_05566396.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
Merz96]
gi|293387593|ref|ZP_06632139.1| metallo-beta-lactamase family protein [Enterococcus faecalis
S613]
gi|312907160|ref|ZP_07766151.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
gi|312909779|ref|ZP_07768627.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
gi|256952721|gb|EEU69353.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
Merz96]
gi|291082925|gb|EFE19888.1| metallo-beta-lactamase family protein [Enterococcus faecalis
S613]
gi|310626188|gb|EFQ09471.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
gi|311289737|gb|EFQ68293.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
Length = 562
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V++ +LDCG +E+ +D V L+ +
Sbjct: 2 STIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPDFTYLEENSER 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY++ K + P+F T
Sbjct: 62 IAGVFLTHGHADAIGALPYLLSK--IQVPVFGT 92
>gi|255976137|ref|ZP_05426723.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
T2]
gi|307279003|ref|ZP_07560061.1| hypothetical protein HMPREF9515_01319 [Enterococcus faecalis
TX0860]
gi|255969009|gb|EET99631.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
T2]
gi|306504128|gb|EFM73340.1| hypothetical protein HMPREF9515_01319 [Enterococcus faecalis
TX0860]
Length = 562
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V++ +LDCG +E+ +D V L+ +
Sbjct: 2 STIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPDFTYLEENSER 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY++ K + P+F T
Sbjct: 62 IAGVFLTHGHADAIGALPYLLSK--IQVPVFGT 92
>gi|229550326|ref|ZP_04439051.1| metallo-beta-lactamase superfamily hydrolase [Enterococcus
faecalis ATCC 29200]
gi|307268704|ref|ZP_07550073.1| hypothetical protein HMPREF9498_00836 [Enterococcus faecalis
TX4248]
gi|307273528|ref|ZP_07554771.1| hypothetical protein HMPREF9514_02294 [Enterococcus faecalis
TX0855]
gi|307274491|ref|ZP_07555674.1| hypothetical protein HMPREF9521_00118 [Enterococcus faecalis
TX2134]
gi|307288514|ref|ZP_07568500.1| hypothetical protein HMPREF9505_01897 [Enterococcus faecalis
TX0109]
gi|312951054|ref|ZP_07769962.1| conserved hypothetical protein [Enterococcus faecalis TX0102]
gi|422691212|ref|ZP_16749250.1| conserved hypothetical protein [Enterococcus faecalis TX0031]
gi|422705151|ref|ZP_16762955.1| conserved hypothetical protein [Enterococcus faecalis TX0043]
gi|422711002|ref|ZP_16767936.1| conserved hypothetical protein [Enterococcus faecalis TX0027]
gi|422716251|ref|ZP_16772967.1| conserved hypothetical protein [Enterococcus faecalis TX0309B]
gi|424671463|ref|ZP_18108462.1| hypothetical protein HMPREF1327_00530 [Enterococcus faecalis 599]
gi|229304589|gb|EEN70585.1| metallo-beta-lactamase superfamily hydrolase [Enterococcus
faecalis ATCC 29200]
gi|306500589|gb|EFM69920.1| hypothetical protein HMPREF9505_01897 [Enterococcus faecalis
TX0109]
gi|306508885|gb|EFM77972.1| hypothetical protein HMPREF9521_00118 [Enterococcus faecalis
TX2134]
gi|306509805|gb|EFM78832.1| hypothetical protein HMPREF9514_02294 [Enterococcus faecalis
TX0855]
gi|306515016|gb|EFM83562.1| hypothetical protein HMPREF9498_00836 [Enterococcus faecalis
TX4248]
gi|310631009|gb|EFQ14292.1| conserved hypothetical protein [Enterococcus faecalis TX0102]
gi|315035071|gb|EFT47003.1| conserved hypothetical protein [Enterococcus faecalis TX0027]
gi|315154091|gb|EFT98107.1| conserved hypothetical protein [Enterococcus faecalis TX0031]
gi|315157378|gb|EFU01395.1| conserved hypothetical protein [Enterococcus faecalis TX0043]
gi|315575756|gb|EFU87947.1| conserved hypothetical protein [Enterococcus faecalis TX0309B]
gi|402358491|gb|EJU93159.1| hypothetical protein HMPREF1327_00530 [Enterococcus faecalis 599]
Length = 565
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V++ +LDCG +E+ +D V L+ +
Sbjct: 5 STIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPDFTYLEENSER 64
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY++ K + P+F T
Sbjct: 65 IAGVFLTHGHADAIGALPYLLSK--IQVPVFGT 95
>gi|227518439|ref|ZP_03948488.1| metallo-beta-lactamase superfamily hydrolase [Enterococcus
faecalis TX0104]
gi|424678485|ref|ZP_18115324.1| hypothetical protein HMPREF1328_02473 [Enterococcus faecalis
ERV103]
gi|424681925|ref|ZP_18118709.1| hypothetical protein HMPREF1329_02739 [Enterococcus faecalis
ERV116]
gi|424683187|ref|ZP_18119940.1| hypothetical protein HMPREF1330_00809 [Enterococcus faecalis
ERV129]
gi|424687189|ref|ZP_18123839.1| hypothetical protein HMPREF1331_01463 [Enterococcus faecalis
ERV25]
gi|424700701|ref|ZP_18136884.1| hypothetical protein HMPREF1335_01648 [Enterococcus faecalis
ERV62]
gi|424718378|ref|ZP_18147627.1| hypothetical protein HMPREF1338_02642 [Enterococcus faecalis
ERV68]
gi|424721254|ref|ZP_18150348.1| hypothetical protein HMPREF1339_02088 [Enterococcus faecalis
ERV72]
gi|424730241|ref|ZP_18158838.1| hypothetical protein HMPREF1341_02307 [Enterococcus faecalis
ERV81]
gi|424750045|ref|ZP_18178116.1| hypothetical protein HMPREF1343_01041 [Enterococcus faecalis
ERV93]
gi|227074117|gb|EEI12080.1| metallo-beta-lactamase superfamily hydrolase [Enterococcus
faecalis TX0104]
gi|402350058|gb|EJU84971.1| hypothetical protein HMPREF1329_02739 [Enterococcus faecalis
ERV116]
gi|402351463|gb|EJU86347.1| hypothetical protein HMPREF1328_02473 [Enterococcus faecalis
ERV103]
gi|402365570|gb|EJU99989.1| hypothetical protein HMPREF1331_01463 [Enterococcus faecalis
ERV25]
gi|402365684|gb|EJV00102.1| hypothetical protein HMPREF1330_00809 [Enterococcus faecalis
ERV129]
gi|402373433|gb|EJV07510.1| hypothetical protein HMPREF1335_01648 [Enterococcus faecalis
ERV62]
gi|402381933|gb|EJV15626.1| hypothetical protein HMPREF1338_02642 [Enterococcus faecalis
ERV68]
gi|402391924|gb|EJV25202.1| hypothetical protein HMPREF1339_02088 [Enterococcus faecalis
ERV72]
gi|402393734|gb|EJV26947.1| hypothetical protein HMPREF1341_02307 [Enterococcus faecalis
ERV81]
gi|402407008|gb|EJV39547.1| hypothetical protein HMPREF1343_01041 [Enterococcus faecalis
ERV93]
Length = 562
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V++ +LDCG +E+ +D V L+ +
Sbjct: 2 STIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPDFTYLEENSER 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY++ K + P+F T
Sbjct: 62 IAGVFLTHGHADAIGALPYLLSK--IQVPVFGT 92
>gi|403337788|gb|EJY68117.1| Integrator complex subunit 11 [Oxytricha trifallax]
Length = 771
Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW---------DEMFSMDFVKELKRHVHH 54
+IK+ L D C ++++ +++ DCG D F ++ +H
Sbjct: 2 VIKVIPLGAGQDVGRSCVIVELGGRRLMFDCGIHMVNQQQFPDFHFLQGSQQQPLDFTNH 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
ID VL+++ + H GAL Y G PI AT P + + + D +V
Sbjct: 62 IDCVLITHFHLDHCGALTYFTEGVGYHGPILATPPTKAIIPLMLEDFRKV 111
>gi|381188809|ref|ZP_09896369.1| metallo-beta-lactamase family protein, RNA-specific [Flavobacterium
frigoris PS1]
gi|379649447|gb|EIA08022.1| metallo-beta-lactamase family protein, RNA-specific [Flavobacterium
frigoris PS1]
Length = 457
Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 14/93 (15%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKR--------HVHHIDAVLLSYPDVAHLGALP 72
YL+ + KIL+DCG +F +KEL+ +V ID VLL++ + H G LP
Sbjct: 22 YLVDTGDKKILIDCG---LFQG--LKELRLKNWEYPPVNVSDIDIVLLTHGHMDHTGYLP 76
Query: 73 YMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
+V K G + PI+ T P + ++ + D +++
Sbjct: 77 RLV-KQGFNGPIYGTNPTLDIAKIILNDSAKIQ 108
>gi|127514255|ref|YP_001095452.1| RNA-metabolising metallo-beta-lactamase [Shewanella loihica PV-4]
gi|126639550|gb|ABO25193.1| RNA-metabolising metallo-beta-lactamase [Shewanella loihica PV-4]
Length = 481
Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVH---HIDAVLLS 61
+ ++ L + + C+LL + ++LLDCG + +D ++ + + I AV+LS
Sbjct: 3 MTLSFLGAAQEVTGSCHLLDISGRQVLLDCGLIQGGKLDALRNHEPFLFEPTEIHAVVLS 62
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD--LFQVR 105
+ + H G LP +V K G + PI+ ++ ++ + D + QVR
Sbjct: 63 HAHIDHSGRLPLLV-KSGFTGPIYTHKATVELCEVMLRDAAMLQVR 107
>gi|160947664|ref|ZP_02094831.1| hypothetical protein PEPMIC_01599 [Parvimonas micra ATCC 33270]
gi|158446798|gb|EDP23793.1| hypothetical protein PEPMIC_01599 [Parvimonas micra ATCC 33270]
Length = 557
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
+KM L G + +L+ D+ I+LDCG D+M +D V L +++ +
Sbjct: 10 LKMIPLGGVGEIGKNMSILEYDDEIIILDCGMTFPDDDMPGIDIVIPDITYLMKNIDRVK 69
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
A+ L++ H+GA+PY++ K ++ P++ T
Sbjct: 70 ALFLTHGHEDHIGAVPYILKK--INVPVYGT 98
>gi|386315150|ref|YP_006011315.1| RNA-metabolising metallo-beta-lactamase [Shewanella putrefaciens
200]
gi|319427775|gb|ADV55849.1| RNA-metabolising metallo-beta-lactamase [Shewanella putrefaciens
200]
Length = 480
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH------VHHIDAVLLSYP 63
L T + + C+LL VD +LLDCG + D EL+ H I AV+LS+
Sbjct: 8 LGATREVTGSCHLLSVDHEHLLLDCGLIQGGKED---ELRNHDPFTFEPESISAVVLSHA 64
Query: 64 DVAHLGALPYMVGKCGLSCPIF 85
+ H G LP +V K G PI+
Sbjct: 65 HIDHSGRLPLLV-KSGFYGPIY 85
>gi|10639780|emb|CAC11752.1| conserved hypothetical protein [Thermoplasma acidophilum]
Length = 497
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG----------WDEMFSMDFVKELKRHVHH 54
+++T+L G + L+ K+L+DCG WD + +V E++ +
Sbjct: 180 VRLTALGGHSEVGRSATLVSTKNSKVLIDCGMMNVGPDADPWDAAPYL-YVPEVQP-LST 237
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
IDAV+L++ + H G LP + K G P++ T P + + D +V
Sbjct: 238 IDAVILTHAHLDHSGLLPLLF-KYGYDGPVYMTPPTRDLAALLQNDYIKV 286
>gi|117918991|ref|YP_868183.1| aspartate kinase [Shewanella sp. ANA-3]
gi|117611323|gb|ABK46777.1| Aspartate kinase [Shewanella sp. ANA-3]
Length = 480
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHH------IDAVLLSYP 63
L T + + C+LL V ++LLDCG + D EL+ H I AV+LS+
Sbjct: 8 LGATEEVTGSCHLLTVAGKQMLLDCGLIQGGKAD---ELRNHEPFSFDPLAISAVVLSHA 64
Query: 64 DVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD--LFQVR 105
+ H G LP +V K G + PIF ++ + + D + QVR
Sbjct: 65 HIDHSGRLPLLV-KAGYTGPIFTHKATAELCAIMLKDAAMLQVR 107
>gi|443694305|gb|ELT95478.1| hypothetical protein CAPTEDRAFT_151615 [Capitella teleta]
Length = 600
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
I++ L D C L+ + ++LDCG DE DF + + ++D
Sbjct: 4 IRVVPLGAGQDVGRSCILVSIGGKNLMLDCGMHMGYNDERRFPDFSYINKEGPLTDYLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G PI+ T P + + + D ++
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGFDGPIYMTHPTKAICPILLEDYRKI 110
>gi|16082538|ref|NP_394086.1| metal-dependent RNase [Thermoplasma acidophilum DSM 1728]
Length = 639
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG----------WDEMFSMDFVKELKRHVHH 54
+++T+L G + L+ K+L+DCG WD + +V E++ +
Sbjct: 180 VRLTALGGHSEVGRSATLVSTKNSKVLIDCGMMNVGPDADPWDAAPYL-YVPEVQP-LST 237
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
IDAV+L++ + H G LP + K G P++ T P + + D +V
Sbjct: 238 IDAVILTHAHLDHSGLLPLLF-KYGYDGPVYMTPPTRDLAALLQNDYIKV 286
>gi|375106423|ref|ZP_09752684.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Burkholderiales bacterium JOSHI_001]
gi|374667154|gb|EHR71939.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Burkholderiales bacterium JOSHI_001]
Length = 451
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHH---IDAVLLSYPDVAHLGALPYMVGK 77
+L+ + +ILLDCG + F + + H H +DAV+LS+ + H G LP +V +
Sbjct: 17 HLVHIGGQRILLDCGMFQGFKVLRERNWDTHDLHPDDVDAVVLSHAHLDHSGWLPVLVAR 76
Query: 78 CGLSCPIFATIPVYKMGQMFMYD 100
G PIFA+ + ++ + D
Sbjct: 77 -GYRGPIFASPATCDLAEVLLRD 98
>gi|333394696|ref|ZP_08476515.1| metallo-beta-lactamase family hydrolase [Lactobacillus
coryniformis subsp. coryniformis KCTC 3167]
gi|420145893|ref|ZP_14653340.1| Hypothetical protein A11Y_175371 [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398402423|gb|EJN55765.1| Hypothetical protein A11Y_175371 [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 568
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHV 52
M+S +K+ L G + Y+++VD+ +LDCG +E+ +D V L+ ++
Sbjct: 1 MSSHVKIMPLGGVRENGKNMYVVEVDDEIYILDCGLMYPENELLGIDVVIPDFSYLEENI 60
Query: 53 HHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ + L++ +GALPY + + S P+F +
Sbjct: 61 DRVVGIFLTHGHADAIGALPYFIKQ--HSVPVFGS 93
>gi|375088825|ref|ZP_09735163.1| hypothetical protein HMPREF9703_01245 [Dolosigranulum pigrum ATCC
51524]
gi|374561790|gb|EHR33129.1| hypothetical protein HMPREF9703_01245 [Dolosigranulum pigrum ATCC
51524]
Length = 560
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S +K+ L G + S Y+++VD +LDCG E++ +D V LK++
Sbjct: 2 SNVKIIPLGGVRENSKSLYVVEVDTQIFVLDCGLMFPEGELYGIDAVIPDFTYLKQNKER 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V LS+ +GALPY + + + P+F +
Sbjct: 62 IAGVFLSHGHEDAIGALPYFIDE--FNVPVFGS 92
>gi|163783204|ref|ZP_02178198.1| RNA-metabolising metallo-beta-lactamase [Hydrogenivirga sp.
128-5-R1-1]
gi|159881538|gb|EDP75048.1| RNA-metabolising metallo-beta-lactamase [Hydrogenivirga sp.
128-5-R1-1]
Length = 458
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH------VHHIDAV 58
I++T + C+L++V+ K+L+DCG MF + +E K + ID +
Sbjct: 3 IRITPCGAARTVTGSCHLVEVEGTKLLIDCG---MFQGE--EEEKNYEPFPFEPGEIDFL 57
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTF 109
+L++ + H G +P +V K G I T P ++ ++ + D +V ++T+
Sbjct: 58 ILTHAHIDHCGRIPLLV-KEGFKGKILCTRPTAQIAKIMLLDAAKVMHETY 107
>gi|388507878|gb|AFK42005.1| unknown [Medicago truncatula]
Length = 534
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVK--ELKRHVHHIDA 57
I++ L + C +++++ +I+ DCG D DF K + +D
Sbjct: 3 IEVLVLGAGQEVGKSCVIVKINGKRIMFDCGMRMRHTDHSRYPDFKKISDSGNFNDALDC 62
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
+++++ + H+GAL Y CG S P++ T P+ + + + D +V D
Sbjct: 63 IIITHFHLDHVGALAYFTEVCGYSGPVYMTYPIKALSPLMLEDYRKVMVD 112
>gi|206890479|ref|YP_002249123.1| metallo-beta-lactamase superfamily [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742417|gb|ACI21474.1| metallo-beta-lactamase superfamily [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 459
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFV--KELKRHVHHIDAVLLSY 62
+K+ T + C+LL++++ IL++CG + +F+ + + ID V+L++
Sbjct: 18 MKIQFFGATKTVTGSCFLLEIEKQNILIECGLFQENDKEFLNYEPFPFNPRKIDLVILTH 77
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLL 114
+ H +P +V K GL C I T + ++ ++D +V+ + K LL
Sbjct: 78 AHLDHSALIPKLV-KEGLRCRIITTPATKDLLEIMLFDALKVQKNENHKQLL 128
>gi|398356209|ref|YP_006529536.1| ribonuclease [Sinorhizobium fredii USDA 257]
gi|399995424|ref|YP_006575662.1| K07576 metallo-beta-lactamase family protein [Sinorhizobium fredii
HH103]
gi|365182271|emb|CCE99121.1| K07576 metallo-beta-lactamase family protein [Sinorhizobium fredii
HH103]
gi|390131456|gb|AFL54836.1| ribonuclease [Sinorhizobium fredii USDA 257]
Length = 560
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHV-----HHIDAV 58
II+ +GT+ S C L++ KIL+DCG + + KEL IDAV
Sbjct: 35 IIRFHGAAGTVTGS--CQLVEFGTTKILIDCGLFQGSKTE--KELNYRPFPFDPRKIDAV 90
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+L++ + H G LP +V + G PIFAT
Sbjct: 91 ILTHAHIDHSGLLPKLV-RLGYDGPIFAT 118
>gi|398353794|ref|YP_006399258.1| ribonuclease [Sinorhizobium fredii USDA 257]
gi|390129120|gb|AFL52501.1| ribonuclease [Sinorhizobium fredii USDA 257]
Length = 532
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-------DEMFSMDFVKELKRHVHHID 56
II+ +GT+ S C L++ KIL+DCG E+ F + K+ ID
Sbjct: 6 IIRFHGAAGTVTGS--CQLVEFGATKILVDCGLFQGSKTEKELNYRSFPFDPKK----ID 59
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
AV+L++ + H G LP +V + G PIFAT + + + D
Sbjct: 60 AVILTHAHIDHSGLLPKLV-RLGYDGPIFATSATADLCSVMLAD 102
>gi|198421242|ref|XP_002128016.1| PREDICTED: similar to Cleavage and polyadenylation specificity
factor subunit 3 (Cleavage and polyadenylation
specificity factor 73 kDa subunit) (CPSF 73 kDa subunit)
(mRNA 3-end-processing endonuclease CPSF-73) [Ciona
intestinalis]
Length = 690
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS-------MDFVKELKRHVHH 54
+ ++K+T L + C+LL+ E KI+LDCG S +DF + K
Sbjct: 14 SELLKITPLGAGQEVGRSCHLLEFKEKKIMLDCGIHPGISGLAGLPYIDFTEPEK----- 68
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
ID +L+++ + H G LP+ + K +F T + + + D +V
Sbjct: 69 IDLLLVTHFHLDHAGGLPWFLQKTTFKGRVFMTHATKAIYRWLLSDYIKV 118
>gi|150400487|ref|YP_001324253.1| beta-lactamase domain-containing protein [Methanococcus aeolicus
Nankai-3]
gi|150013190|gb|ABR55641.1| beta-lactamase domain protein [Methanococcus aeolicus Nankai-3]
Length = 635
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH------VHHID 56
S I+M+ L G + C LQ E +IL+DCG + +MD + V ID
Sbjct: 178 SWIRMSFLGGAREVGRTCNYLQTPESRILIDCGIN--VAMDGDRAFPHFDAPEFAVEEID 235
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
AV++++ + H G +P + + G PI+ + P + + D +
Sbjct: 236 AVVVTHAHLDHCGFVPGLF-RYGYDGPIYCSKPTRDLMTLLQKDYIDI 282
>gi|335357120|ref|ZP_08548990.1| metallo-beta-lactamase superfamily protein [Lactobacillus
animalis KCTC 3501]
Length = 569
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ SL G + + Y ++V++ +LDCG +E+ +D V + L+++
Sbjct: 2 SDIKIISLGGVRENAKNMYAVEVNDDIYILDCGLKYPENELLGIDIVIPDFEYLRQNARR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY V + P+F +
Sbjct: 62 IVGVFLTHGHADAIGALPYFVSE--FDVPVFGS 92
>gi|217075847|gb|ACJ86283.1| unknown [Medicago truncatula]
Length = 230
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVK--ELKRHVHHIDA 57
I++ L + C +++++ +I+ DCG D DF K + +D
Sbjct: 3 IEVLVLGAGQEVGKSCVIVKINGKRIMFDCGMRMRHTDHSRYPDFKKISDSGNFNDALDC 62
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
+++++ + H+GAL Y CG S P++ T P+ + + + D +V D
Sbjct: 63 IIITHFHLDHVGALAYFTEVCGYSGPVYMTYPIKALSPLMLEDYRKVMVD 112
>gi|300697519|ref|YP_003748180.1| exonuclease/RNA metabolizing enzyme, metallo-beta-lactamase
family [Ralstonia solanacearum CFBP2957]
gi|299074243|emb|CBJ53788.1| exonuclease/RNA metabolizing enzyme, metallo-beta-lactamase
family [Ralstonia solanacearum CFBP2957]
Length = 452
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVK---ELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
Y+L+ ++++DCG + F ++ +L + HHIDAVLL++ + H G LP +V +
Sbjct: 17 YVLEAGGRQVMVDCGLFQGFKSLRLRNWDKLPVNPHHIDAVLLTHAHIDHSGYLPLLV-R 75
Query: 78 CGLSCPIFAT 87
G P++ T
Sbjct: 76 NGFRGPVYCT 85
>gi|325103497|ref|YP_004273151.1| RNA-metabolising metallo-beta-lactamase [Pedobacter saltans DSM
12145]
gi|324972345|gb|ADY51329.1| RNA-metabolising metallo-beta-lactamase [Pedobacter saltans DSM
12145]
Length = 467
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFV--KELKRHVHHIDAVLLSY 62
+K+T + +LL +D ++IL+DCG D D + ID ++L++
Sbjct: 1 MKLTCWGAAKQVTGSMHLLDIDNYRILIDCGLDYEGGKDLSHNANFPFNPAEIDLIILTH 60
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ H G +P ++ K G I T P ++ Q+ + D
Sbjct: 61 AHIDHSGNIPTLI-KEGYKGQILCTPPTAELSQLLLSD 97
>gi|404450111|ref|ZP_11015097.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Indibacter alkaliphilus LW1]
gi|403764310|gb|EJZ25215.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Indibacter alkaliphilus LW1]
Length = 466
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKR---HVHHIDAVLLS 61
+K+ L G + YL+++ F+IL+DCG + ++ + + IDAV+L+
Sbjct: 3 VKLKFLGGAKTVTGSRYLVEIGHFRILVDCGLFQGLKDYRIRNWEAFPVNPREIDAVILT 62
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ + H G LP +V K G + I T P ++ ++ + D
Sbjct: 63 HAHIDHSGYLPKLV-KEGFNGQIHCTYPTAELVKILLLD 100
>gi|393764474|ref|ZP_10353084.1| metallo-beta-lactamase superfamily protein [Alishewanella agri
BL06]
gi|392604603|gb|EIW87504.1| metallo-beta-lactamase superfamily protein [Alishewanella agri
BL06]
Length = 468
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKR-----HVHHIDAVLLSYPDVAHLGALPYM 74
CYLL++++ + LLDCG + D V+E + IDAV+LS+ + H G LP +
Sbjct: 20 CYLLKMNQQQFLLDCGMVQ--GADQVREWHKFRFPFKPKDIDAVILSHAHIDHSGLLPLL 77
Query: 75 VGKCGLSCPIFAT 87
V K G I+ T
Sbjct: 78 VAK-GFGGNIYCT 89
>gi|390933363|ref|YP_006390868.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389568864|gb|AFK85269.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 820
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELK--RHVHHIDAVLLSY 62
+K+ G + CYL +D ILLDCG + D + + + + +D +L+S+
Sbjct: 1 MKLCFCGGASEVGASCYLANIDGKNILLDCGIRMSSNKDNLPDFQLIQENGGVDVILISH 60
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ H+GALP ++ + I+ T + ++ +YD ++
Sbjct: 61 AHMDHIGALP-IISRIYPDAKIYMTHAAKDLTRVLLYDSLKI 101
>gi|397667286|ref|YP_006508823.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
gi|395130697|emb|CCD08943.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
Length = 453
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDC----GWDEMFSMDFVKELKRHVHHIDAVLL 60
+K+T L T + YLL V KIL+DC G+ E+ ++ L H IDAV++
Sbjct: 1 MKLTFLGATETVTGSKYLLTVGSKKILIDCGLFQGYKELRLRNWAP-LPIDPHDIDAVII 59
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFAT 87
++ + H G LP +V K G I+AT
Sbjct: 60 THAHIDHTGYLPLLV-KNGFRGKIYAT 85
>gi|381182565|ref|ZP_09891365.1| hypothetical protein KKC_04613 [Listeriaceae bacterium TTU M1-001]
gi|380317544|gb|EIA20863.1| hypothetical protein KKC_04613 [Listeriaceae bacterium TTU M1-001]
Length = 555
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 10/108 (9%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHIDAVLLS 61
L G + Y+++VD+ +LD G DE+ +D V + L+ + + A+ LS
Sbjct: 14 LGGVAESGKNMYVVEVDDELFILDAGLMFPEDELLGIDVVIPDFRYLEENKERVKAIFLS 73
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTF 109
+ +GALPY++ K + P++ T ++ + + + +VR+ F
Sbjct: 74 HGHEDAIGALPYLLQK--VKAPVYGTELTIELAKSSVKEYKKVRFKNF 119
>gi|295107897|emb|CBL21850.1| Predicted exonuclease of the beta-lactamase fold involved in RNA
processing [Ruminococcus obeum A2-162]
Length = 539
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+K+T + T + + CY L+ K L+DCG ++ +E+ +D VLL++
Sbjct: 1 MKITFIGATHEVTGSCYYLEAAGKKFLVDCGMEQGPDYYENQEIPVKGSDLDFVLLTHAH 60
Query: 65 VAHLGALPYMVGKCGLSCPIFAT 87
+ H G LP + K G P++AT
Sbjct: 61 MDHSGNLPAIYAK-GFQGPVYAT 82
>gi|312083284|ref|XP_003143797.1| RNA-metabolising metallo-beta-lactamase [Loa loa]
gi|307761039|gb|EFO20273.1| RNA-metabolising metallo-beta-lactamase [Loa loa]
Length = 644
Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS-------MDFVKELKRHVHHIDA 57
IK+ L D C L+ + ++LDCG +S F+ +D
Sbjct: 59 IKIVPLGAGRDVGRSCILVSIGGKNVMLDCGMHMGYSDERRFPDFSFISGGGSLTEFLDC 118
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
V++++ + H G+LP+M G PI+ T P + + + D +++
Sbjct: 119 VIITHFHLDHCGSLPHMSEVIGYDGPIYMTYPTKAIAPVLLEDYRKIQ 166
>gi|407701271|ref|YP_006826058.1| Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase
[Alteromonas macleodii str. 'Black Sea 11']
gi|407250418|gb|AFT79603.1| Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase
[Alteromonas macleodii str. 'Black Sea 11']
Length = 471
Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKRH------VHHIDAVLLSYPDVAHLGALPYM 74
+LL+ + +LLDCG ++ +E K H V +DAV+LS+ + H G LP +
Sbjct: 18 HLLKTEHSTLLLDCG---LYQGRRDEEAKNHKPLPVDVSQLDAVILSHAHLDHSGRLPIL 74
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ + G S PI+ T P + ++ + D
Sbjct: 75 L-REGYSGPIYMTRPTVDLIEVLLKD 99
>gi|438002123|ref|YP_007271866.1| Metallo-beta-lactamase family protein, RNA-specific
[Tepidanaerobacter acetatoxydans Re1]
gi|432178917|emb|CCP25890.1| Metallo-beta-lactamase family protein, RNA-specific
[Tepidanaerobacter acetatoxydans Re1]
Length = 469
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELK--RHVHHIDAVLLSY 62
+K+ G + CYL+ +D ILLDCG S D + + + + IDA+++S+
Sbjct: 1 MKLIFCGGAQEVGASCYLVTIDGKNILLDCGIRLTSSKDTLPDFRLIQENGGIDAIIISH 60
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
H GALP + + + I+ T + ++ +YD ++
Sbjct: 61 AHTDHTGALP-AISRQFPNALIYMTHMSKDLTRVLLYDSLKI 101
>gi|332799023|ref|YP_004460522.1| beta-lactamase domain-containing protein [Tepidanaerobacter
acetatoxydans Re1]
gi|332696758|gb|AEE91215.1| beta-lactamase domain protein [Tepidanaerobacter acetatoxydans Re1]
Length = 831
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELK--RHVHHIDAVLLSY 62
+K+ G + CYL+ +D ILLDCG S D + + + + IDA+++S+
Sbjct: 1 MKLIFCGGAQEVGASCYLVTIDGKNILLDCGIRLTSSKDTLPDFRLIQENGGIDAIIISH 60
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
H GALP + + + I+ T + ++ +YD ++
Sbjct: 61 AHTDHTGALP-AISRQFPNALIYMTHMSKDLTRVLLYDSLKI 101
>gi|307291168|ref|ZP_07571053.1| hypothetical protein HMPREF9509_01475 [Enterococcus faecalis
TX0411]
gi|306497822|gb|EFM67354.1| hypothetical protein HMPREF9509_01475 [Enterococcus faecalis
TX0411]
Length = 562
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V++ +LDCG +E+ +D V L+ +
Sbjct: 2 STIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPDFTYLEENSER 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I + L++ +GALPY++ K + P+F T
Sbjct: 62 IAGIFLTHGHADAIGALPYLLSK--IQVPVFGT 92
>gi|229546137|ref|ZP_04434862.1| metallo-beta-lactamase superfamily hydrolase [Enterococcus
faecalis TX1322]
gi|256852833|ref|ZP_05558203.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
T8]
gi|422686139|ref|ZP_16744347.1| conserved hypothetical protein [Enterococcus faecalis TX4000]
gi|229308661|gb|EEN74648.1| metallo-beta-lactamase superfamily hydrolase [Enterococcus
faecalis TX1322]
gi|256711292|gb|EEU26330.1| metallo-beta-lactamase superfamily protein [Enterococcus faecalis
T8]
gi|315029170|gb|EFT41102.1| conserved hypothetical protein [Enterococcus faecalis TX4000]
Length = 565
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + Y+ +V++ +LDCG +E+ +D V L+ +
Sbjct: 5 STIKIVPLGGVRENGKNMYVAEVEDEIFVLDCGLQYPENELLGIDVVIPDFTYLEENSER 64
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I + L++ +GALPY++ K + P+F T
Sbjct: 65 IAGIFLTHGHADAIGALPYLLSK--IQVPVFGT 95
>gi|312136618|ref|YP_004003955.1| kh-domain/beta-lactamase-domain-containing protein [Methanothermus
fervidus DSM 2088]
gi|311224337|gb|ADP77193.1| KH-domain/beta-lactamase-domain protein [Methanothermus fervidus
DSM 2088]
Length = 650
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 6 KMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHVHHIDAVLL 60
++T+L G + C LQ KILLDCG DE + ++ + + I+AV++
Sbjct: 196 RITALGGFREVGRSCLYLQTPNSKILLDCGVNVAANDEKNAYPYLNIPEFILDEIEAVVI 255
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
S+ + H G +PY+ G P++ + P + + D
Sbjct: 256 SHAHLDHSGFVPYLY-HYGYRGPVYCSAPTRDLMALLQLD 294
>gi|225572894|ref|ZP_03781649.1| hypothetical protein RUMHYD_01085 [Blautia hydrogenotrophica DSM
10507]
gi|225039759|gb|EEG50005.1| metallo-beta-lactamase domain protein [Blautia hydrogenotrophica
DSM 10507]
Length = 532
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVK--ELKRHVHHIDAVLLSY 62
+K+T + T + + CY L+ K L+DCG ++ D+ + E+ ++ +D +LL++
Sbjct: 1 MKITFIGATHEVTGSCYYLEAAGKKFLVDCGMEQ--GPDYYENVEIPVNLGEVDFLLLTH 58
Query: 63 PDVAHLGALPYMVGKCGLSCPIFAT 87
+ H G +P + K G P++AT
Sbjct: 59 AHIDHSGNIPAIYAK-GFQGPVYAT 82
>gi|345018855|ref|YP_004821208.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344034198|gb|AEM79924.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 829
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 10 LSGTMDE-SPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHH--IDAVLLSYPDVA 66
SG +E CYL+ ++ ILLDCG + D + + + H +DA+++S+ +
Sbjct: 5 FSGGANEVGASCYLINLEGKNILLDCGIRMSSTKDNLPDFRLIQEHGGVDAIIVSHAHLD 64
Query: 67 HLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
H GALP ++ + I+ T + ++ +YD ++
Sbjct: 65 HTGALP-IISRMYPQAKIYMTHATKDLTRVLLYDSLKI 101
>gi|402465801|gb|EJW01455.1| hypothetical protein EDEG_00447 [Edhazardia aedis USNM 41457]
Length = 774
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS----MDFVKELKRHVHHIDAVLL 60
+K+T L + C ++ + ++LLD G F+ + F+ + +H IDA+ +
Sbjct: 7 LKITPLGAGNEVGRSCIHIEYKQTQLLLDIGIHPAFTGPCALPFLDVID--LHKIDALFV 64
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++ + H GALPY+ K IF T P + + + D +V
Sbjct: 65 THFHLDHAGALPYLTEKTNFKGKIFMTHPTKSILKYLLNDYTKV 108
>gi|375109082|ref|ZP_09755336.1| metallo-beta-lactamase superfamily protein [Alishewanella
jeotgali KCTC 22429]
gi|374571268|gb|EHR42397.1| metallo-beta-lactamase superfamily protein [Alishewanella
jeotgali KCTC 22429]
Length = 468
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKR-----HVHHIDAVLLSYPDVAHLGALPYM 74
CYL+++++ + LLDCG + D V+E + IDAV+LS+ + H G LP +
Sbjct: 20 CYLIKINQQQFLLDCGMVQ--GADQVREWHKFRFPFKPKDIDAVILSHAHIDHSGLLPLL 77
Query: 75 VGKCGLSCPIFAT 87
V K G I+ T
Sbjct: 78 VAK-GFGGNIYCT 89
>gi|148254501|ref|YP_001239086.1| hypothetical protein BBta_3061 [Bradyrhizobium sp. BTAi1]
gi|146406674|gb|ABQ35180.1| hypothetical protein BBta_3061 [Bradyrhizobium sp. BTAi1]
Length = 533
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKR-----HVHHIDAVLLSYPDVAHLGALPYM 74
CYL++ D+ +IL+DCG + +KEL IDAVLL++ + H G LP +
Sbjct: 18 CYLVRTDKGQILIDCGLFQ--GQKTLKELNYGDFPFRPAGIDAVLLTHAHIDHSGLLPKL 75
Query: 75 VGKCGLSCPIFAT 87
V + G IFAT
Sbjct: 76 V-RMGFDGKIFAT 87
>gi|323489069|ref|ZP_08094305.1| beta-lactamase domain-containing protein [Planococcus donghaensis
MPA1U2]
gi|323397294|gb|EGA90104.1| beta-lactamase domain-containing protein [Planococcus donghaensis
MPA1U2]
Length = 373
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 22 LLQVDEFKILLDCG-WDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
LL+V+ F IL+D G W +D++K+ + + +ID V+ ++PD H+G L ++G+
Sbjct: 69 LLEVEGFSILIDAGNWKSTEVIDYLKQ--QEIKNIDIVVGTHPDADHIGQLAQVIGE 123
>gi|193608339|ref|XP_001949326.1| PREDICTED: integrator complex subunit 11-like isoform 1
[Acyrthosiphon pisum]
gi|328710634|ref|XP_003244318.1| PREDICTED: integrator complex subunit 11-like isoform 2
[Acyrthosiphon pisum]
Length = 603
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVH 53
+++ I +T L D C L+ + I+LDCG DE DF +
Sbjct: 3 ISNRIIVTPLGAGQDVGRSCILITIGNRNIMLDCGMHMGYQDERKFPDFSYITSDGNITD 62
Query: 54 HIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDL 101
ID V++S+ + H GAL Y+ G PI+ T P + + + D+
Sbjct: 63 IIDCVIISHFHLDHCGALSYLTEHLGYHGPIYMTHPTKAIAPILLEDM 110
>gi|241889914|ref|ZP_04777212.1| ribonuclease J 2 [Gemella haemolysans ATCC 10379]
gi|241863536|gb|EER67920.1| ribonuclease J 2 [Gemella haemolysans ATCC 10379]
Length = 622
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
I++T L G + + Y++++ + +LD G EM +D V L R+ I
Sbjct: 75 IRITPLGGVEEVAKNMYMVEIGDEIFVLDAGLMFPETEMIGIDAVIPDISYLVRNKQKIK 134
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ LS V+ +GA+PY++ K L CP++ +
Sbjct: 135 GIFLSNGHVSSMGAVPYIIDK--LKCPVYGS 163
>gi|114330238|ref|YP_746460.1| beta-lactamase domain-containing protein [Nitrosomonas eutropha
C91]
gi|114307252|gb|ABI58495.1| beta-lactamase domain protein [Nitrosomonas eutropha C91]
Length = 468
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHV------HHIDAV 58
+++T L G + + CYL++ D+ + L+DCG MF K H +D V
Sbjct: 1 MQITFLGGVGEVTGSCYLVETDDVRFLVDCG---MFQGGRDASRKNHTAINFNPESMDFV 57
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
LL++ V H G LP + G P++ T
Sbjct: 58 LLTHAHVDHSGLLPRL-SVLGFRGPVYMT 85
>gi|399024769|ref|ZP_10726797.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Chryseobacterium sp. CF314]
gi|398079754|gb|EJL70595.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Chryseobacterium sp. CF314]
Length = 455
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 15/108 (13%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH--------V 52
M +II + SL G + +LL+ E IL+DCG +F +K L+ V
Sbjct: 1 MDTII-LKSLGGAETVTGSKHLLKTSELTILVDCG---LFQG--IKSLREQNWESLNVDV 54
Query: 53 HHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
ID V+L++ + H G +P +V K G I+ T P ++ ++ + D
Sbjct: 55 AEIDIVILTHAHLDHCGYIPLLV-KNGFKGKIYMTEPTKELAKLILLD 101
>gi|260790823|ref|XP_002590440.1| hypothetical protein BRAFLDRAFT_289082 [Branchiostoma floridae]
gi|229275634|gb|EEN46451.1| hypothetical protein BRAFLDRAFT_289082 [Branchiostoma floridae]
Length = 597
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 15 DESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDAVLLSYPDVAH 67
D C L+ + I+LDCG DE DF + + H+D V++S+ + H
Sbjct: 5 DVGRSCILVSIGGKNIMLDCGMHMGYNDERRFPDFTYITQSGTLNDHLDCVIISHFHLDH 64
Query: 68 LGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
G LPYM G PI+ T P + + + D ++ D
Sbjct: 65 CGCLPYMTEMVGYDGPIYMTHPTKAICPILLEDYRKITVD 104
>gi|399074890|ref|ZP_10751269.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Caulobacter sp. AP07]
gi|398039894|gb|EJL33017.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Caulobacter sp. AP07]
Length = 553
Score = 42.0 bits (97), Expect = 0.047, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFVKELKRHVHHID 56
MT I+ +G + S C LQ E IL+DCG + ++++ E ID
Sbjct: 1 MTPILSFHGAAGCVTGS--CARLQTQEATILVDCGMFQGSKTLKALNY-GEFPFDPSQID 57
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
AVLL++ V H G LP ++ G PI+AT + + + D
Sbjct: 58 AVLLTHAHVDHCGLLPKLM-LAGFEGPIYATAATRDLCAVMLAD 100
>gi|365904362|ref|ZP_09442121.1| metallo-beta-lactamase hydrolase [Lactobacillus versmoldensis
KCTC 3814]
Length = 566
Score = 42.0 bits (97), Expect = 0.047, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHV 52
M+ IK+ LSG + Y ++V++ +LD G ++++ +D V +K ++
Sbjct: 1 MSQKIKIMILSGVRETGKNMYAVEVNDEIYILDIGLQYPDNDLYGIDVVVPDMTYIKENI 60
Query: 53 HHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFA 86
H + + LS+ +GALPY+VG + P+F
Sbjct: 61 HKVVGIFLSHGHADAIGALPYLVGDYDI--PVFG 92
>gi|401624491|gb|EJS42547.1| ysh1p [Saccharomyces arboricola H-6]
Length = 779
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDA 57
T+ K SL G+ + C++LQ ++LD G + + S+ F E + ID
Sbjct: 6 TTKFKFFSLGGSNEVGRSCHVLQYKGKTVMLDAGIHPAYQGLASLPFYDEFD--LSKIDI 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+L+S+ + H +LPY++ + +F T P + + + D +V
Sbjct: 64 LLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRV 110
>gi|374710344|ref|ZP_09714778.1| beta-lactamase domain-containing protein [Sporolactobacillus
inulinus CASD]
Length = 916
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 10/106 (9%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DE-MFSMDFVKELKRHVHHIDAV 58
++K++ L G + C +Q+ + +++D G DE + ++ + +L + DA+
Sbjct: 6 LLKISVLGGGSEIGASCLHIQIGKTNLIIDAGMRVHGDEPLPAIGMLDDLGKP----DAI 61
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
L+++ H+GALP +V + PIFA P + Q+ M D F++
Sbjct: 62 LVTHAHADHIGALP-VVHRIYPDVPIFANPPTADLMQIMMRDSFKI 106
>gi|113968883|ref|YP_732676.1| RNA-metabolizing metallo-beta-lactamase [Shewanella sp. MR-4]
gi|114048980|ref|YP_739530.1| RNA-metabolising metallo-beta-lactamase [Shewanella sp. MR-7]
gi|113883567|gb|ABI37619.1| RNA-metabolizing metallo-beta-lactamase [Shewanella sp. MR-4]
gi|113890422|gb|ABI44473.1| RNA-metabolising metallo-beta-lactamase [Shewanella sp. MR-7]
Length = 480
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHV---HHIDAVLLSYPDVA 66
L T + + C+LL + ++LLDCG + D ++ +R I AV+LS+ +
Sbjct: 8 LGATEEVTGSCHLLTIAGQQMLLDCGLIQGGKADELRNHERFSFDPQAISAVVLSHAHID 67
Query: 67 HLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD--LFQVR 105
H G LP +V K G + PI+ ++ + + D + QVR
Sbjct: 68 HSGRLPLLV-KAGYTGPIYTHKATAELCAIMLKDAAMLQVR 107
>gi|262168029|ref|ZP_06035728.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
RC27]
gi|262023562|gb|EEY42264.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
RC27]
Length = 438
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 16 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 69
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ GL PI++T ++ + + D
Sbjct: 70 LA-AGLKQPIYSTAATAELVPLMLED 94
>gi|15640293|ref|NP_229920.1| hypothetical protein VC0264 [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121586320|ref|ZP_01676109.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|153818482|ref|ZP_01971149.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|153821803|ref|ZP_01974470.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|227080479|ref|YP_002809030.1| hypothetical protein VCM66_0249 [Vibrio cholerae M66-2]
gi|229506939|ref|ZP_04396447.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
BX 330286]
gi|229509310|ref|ZP_04398793.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
B33]
gi|229516256|ref|ZP_04405704.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
RC9]
gi|229606450|ref|YP_002877098.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
MJ-1236]
gi|298500900|ref|ZP_07010702.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
gi|9654673|gb|AAF93439.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549440|gb|EAX59468.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|126510958|gb|EAZ73552.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|126520699|gb|EAZ77922.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|227008367|gb|ACP04579.1| conserved hypothetical protein [Vibrio cholerae M66-2]
gi|229346682|gb|EEO11652.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
RC9]
gi|229353625|gb|EEO18562.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
B33]
gi|229356044|gb|EEO20963.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
BX 330286]
gi|229369105|gb|ACQ59528.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
MJ-1236]
gi|297540404|gb|EFH76463.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
Length = 455
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 33 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 86
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ GL PI++T ++ + + D
Sbjct: 87 LA-AGLKQPIYSTAATAELVPLMLED 111
>gi|384423584|ref|YP_005632942.1| Metallo-beta-lactamase family protein, RNA- specific [Vibrio
cholerae LMA3984-4]
gi|422305672|ref|ZP_16392865.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae CP1035(8)]
gi|422305728|ref|ZP_16392919.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae CP1035(8)]
gi|424589540|ref|ZP_18028997.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1037(10)]
gi|327483137|gb|AEA77544.1| Metallo-beta-lactamase family protein, RNA- specific [Vibrio
cholerae LMA3984-4]
gi|408037347|gb|EKG73744.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1037(10)]
gi|408628215|gb|EKL00980.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae CP1035(8)]
gi|408628309|gb|EKL01067.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae CP1035(8)]
Length = 438
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 16 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 69
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ GL PI++T ++ + + D
Sbjct: 70 LA-AGLKQPIYSTAATAELVPLMLED 94
>gi|255016998|ref|ZP_05289124.1| hypothetical protein LmonF_02778 [Listeria monocytogenes FSL
F2-515]
Length = 278
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Query: 12 GTMDES-PPCYLLQVDEFKILLDCG----WDEMFSMDFV----KELKRHVHHIDAVLLSY 62
G +DES Y++++DE +LD G +E+ +D V K L+ + + A+ L++
Sbjct: 15 GGVDESGKNLYVVEIDEDIFILDAGLMFPENELLGIDIVIPDFKYLEENKDRVKAIFLTH 74
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTF 109
+GALPY++ K + P++ T + + + + ++R+ F
Sbjct: 75 GHEDAIGALPYLLQK--IKAPVYGTELTIALAKSALKEHRKLRFKNF 119
>gi|147674075|ref|YP_001218520.1| hypothetical protein VC0395_A2642 [Vibrio cholerae O395]
gi|227116657|ref|YP_002818553.1| hypothetical protein VC395_0293 [Vibrio cholerae O395]
gi|146315958|gb|ABQ20497.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|227012107|gb|ACP08317.1| conserved hypothetical protein [Vibrio cholerae O395]
Length = 455
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 33 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 86
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ GL PI++T ++ + + D
Sbjct: 87 LA-AGLKQPIYSTAATAELVPLMLED 111
>gi|153818271|ref|ZP_01970938.1| cleavage and polyadenylation [Vibrio cholerae NCTC 8457]
gi|255744070|ref|ZP_05418024.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholera
CIRS 101]
gi|262161959|ref|ZP_06030976.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
INDRE 91/1]
gi|360036901|ref|YP_004938664.1| metallo-beta-lactamase family protein [Vibrio cholerae O1 str.
2010EL-1786]
gi|379740152|ref|YP_005332121.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
IEC224]
gi|417811337|ref|ZP_12458002.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-49A2]
gi|417815091|ref|ZP_12461732.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae HCUF01]
gi|418330969|ref|ZP_12941927.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-06A1]
gi|418335930|ref|ZP_12944833.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-23A1]
gi|418342505|ref|ZP_12949316.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-28A1]
gi|418347677|ref|ZP_12952415.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-43A1]
gi|418353184|ref|ZP_12955911.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-61A1]
gi|419824739|ref|ZP_14348249.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae CP1033(6)]
gi|421315554|ref|ZP_15766128.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1032(5)]
gi|421319053|ref|ZP_15769615.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1038(11)]
gi|421323089|ref|ZP_15773622.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1041(14)]
gi|421326559|ref|ZP_15777078.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1042(15)]
gi|421330490|ref|ZP_15780975.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1046(19)]
gi|421334086|ref|ZP_15784559.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1048(21)]
gi|421337990|ref|ZP_15788432.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-20A2]
gi|421345368|ref|ZP_15795756.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-46A1]
gi|422890300|ref|ZP_16932737.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-40A1]
gi|422901089|ref|ZP_16936483.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-48A1]
gi|422905261|ref|ZP_16940130.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-70A1]
gi|422912004|ref|ZP_16946542.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae HFU-02]
gi|422924477|ref|ZP_16957530.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-38A1]
gi|423143532|ref|ZP_17131158.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-19A1]
gi|423148514|ref|ZP_17135884.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-21A1]
gi|423152300|ref|ZP_17139522.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-22A1]
gi|423155092|ref|ZP_17142235.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-32A1]
gi|423158958|ref|ZP_17145936.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-33A2]
gi|423163624|ref|ZP_17150430.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-48B2]
gi|423729634|ref|ZP_17702967.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-17A1]
gi|423746617|ref|ZP_17711165.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-50A2]
gi|423890243|ref|ZP_17725179.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-62A1]
gi|423924780|ref|ZP_17729793.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-77A1]
gi|424000807|ref|ZP_17743909.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-17A2]
gi|424004967|ref|ZP_17747964.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-37A1]
gi|424022765|ref|ZP_17762440.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-62B1]
gi|424025782|ref|ZP_17765411.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-69A1]
gi|424585159|ref|ZP_18024764.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1030(3)]
gi|424593784|ref|ZP_18033135.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1040(13)]
gi|424597715|ref|ZP_18036926.1| metallo-beta-lactamase superfamily protein [Vibrio Cholerae
CP1044(17)]
gi|424600484|ref|ZP_18039652.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1047(20)]
gi|424605402|ref|ZP_18044374.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1050(23)]
gi|424609118|ref|ZP_18047986.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-39A1]
gi|424615914|ref|ZP_18054616.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-42A1]
gi|424620677|ref|ZP_18059211.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-47A1]
gi|424651410|ref|ZP_18088945.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-57A2]
gi|424655363|ref|ZP_18092674.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-81A2]
gi|443502315|ref|ZP_21069316.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-64A1]
gi|443506215|ref|ZP_21073022.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-65A1]
gi|443510053|ref|ZP_21076735.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-67A1]
gi|443513895|ref|ZP_21080448.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-68A1]
gi|443517699|ref|ZP_21084133.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-71A1]
gi|443522288|ref|ZP_21088546.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-72A2]
gi|443529218|ref|ZP_21095239.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae HC-7A1]
gi|443533958|ref|ZP_21099889.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-80A1]
gi|443540044|ref|ZP_21105895.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-81A1]
gi|449054541|ref|ZP_21733209.1| RNA-specific metallo-beta-lactamase family protein [Vibrio cholerae
O1 str. Inaba G4222]
gi|126511160|gb|EAZ73754.1| cleavage and polyadenylation [Vibrio cholerae NCTC 8457]
gi|255738335|gb|EET93726.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholera
CIRS 101]
gi|262028337|gb|EEY46993.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
INDRE 91/1]
gi|340045480|gb|EGR06423.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae HCUF01]
gi|340045887|gb|EGR06825.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-49A2]
gi|341626387|gb|EGS51781.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-70A1]
gi|341628107|gb|EGS53386.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-48A1]
gi|341628302|gb|EGS53561.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-40A1]
gi|341641716|gb|EGS66240.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae HFU-02]
gi|341648945|gb|EGS72956.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-38A1]
gi|356422394|gb|EHH75870.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-06A1]
gi|356423178|gb|EHH76632.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-21A1]
gi|356427287|gb|EHH80538.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-19A1]
gi|356434312|gb|EHH87493.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-23A1]
gi|356435592|gb|EHH88743.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-22A1]
gi|356438474|gb|EHH91493.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-28A1]
gi|356444114|gb|EHH96927.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-32A1]
gi|356448398|gb|EHI01170.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-43A1]
gi|356451060|gb|EHI03764.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-33A2]
gi|356455377|gb|EHI08020.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-61A1]
gi|356456690|gb|EHI09277.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-48B2]
gi|356648055|gb|AET28110.1| metallo-beta-lactamase family protein [Vibrio cholerae O1 str.
2010EL-1786]
gi|378793662|gb|AFC57133.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
IEC224]
gi|395923043|gb|EJH33856.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1032(5)]
gi|395924409|gb|EJH35212.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1041(14)]
gi|395926329|gb|EJH37117.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1038(11)]
gi|395934890|gb|EJH45627.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1042(15)]
gi|395936177|gb|EJH46906.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1046(19)]
gi|395938149|gb|EJH48847.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1048(21)]
gi|395947164|gb|EJH57821.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-20A2]
gi|395948738|gb|EJH59376.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-46A1]
gi|395964869|gb|EJH75062.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-57A2]
gi|395967572|gb|EJH77637.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-42A1]
gi|395976269|gb|EJH85725.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-47A1]
gi|395979240|gb|EJH88600.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1030(3)]
gi|395979945|gb|EJH89262.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1047(20)]
gi|408010877|gb|EKG48720.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-39A1]
gi|408038149|gb|EKG74504.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1040(13)]
gi|408045625|gb|EKG81437.1| metallo-beta-lactamase superfamily protein [Vibrio Cholerae
CP1044(17)]
gi|408047341|gb|EKG82976.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
CP1050(23)]
gi|408057986|gb|EKG92810.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-81A2]
gi|408612393|gb|EKK85736.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae CP1033(6)]
gi|408628275|gb|EKL01035.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-17A1]
gi|408643976|gb|EKL15688.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-50A2]
gi|408659921|gb|EKL30954.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-77A1]
gi|408660820|gb|EKL31822.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-62A1]
gi|408849984|gb|EKL89973.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-37A1]
gi|408850287|gb|EKL90254.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-17A2]
gi|408875779|gb|EKM14922.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-62B1]
gi|408882197|gb|EKM21041.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-69A1]
gi|443433351|gb|ELS75860.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-64A1]
gi|443437162|gb|ELS83262.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-65A1]
gi|443440995|gb|ELS90666.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-67A1]
gi|443444836|gb|ELS98096.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-68A1]
gi|443448682|gb|ELT05300.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-71A1]
gi|443451752|gb|ELT11998.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-72A2]
gi|443460061|gb|ELT27451.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae HC-7A1]
gi|443462899|gb|ELT33919.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-80A1]
gi|443464331|gb|ELT38994.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-81A1]
gi|448265687|gb|EMB02920.1| RNA-specific metallo-beta-lactamase family protein [Vibrio cholerae
O1 str. Inaba G4222]
Length = 438
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 16 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 69
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ GL PI++T ++ + + D
Sbjct: 70 LA-AGLKQPIYSTAATAELVPLMLED 94
>gi|153801549|ref|ZP_01956135.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|229521020|ref|ZP_04410441.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
TM 11079-80]
gi|229527238|ref|ZP_04416631.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
12129(1)]
gi|124122954|gb|EAY41697.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|229335246|gb|EEO00730.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
12129(1)]
gi|229341905|gb|EEO06906.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
TM 11079-80]
Length = 455
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 33 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 86
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ GL PI++T ++ + + D
Sbjct: 87 LA-AGLKQPIYSTAATAELVPLMLED 111
>gi|255030427|ref|ZP_05302378.1| hypothetical protein LmonL_17426 [Listeria monocytogenes LO28]
Length = 313
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Query: 12 GTMDES-PPCYLLQVDEFKILLDCG----WDEMFSMDFV----KELKRHVHHIDAVLLSY 62
G +DES Y++++DE +LD G +E+ +D V K L+ + + A+ L++
Sbjct: 15 GGVDESGKNLYVVEIDEDIFILDAGLMFPENELLGIDIVIPDFKYLEENKDRVKAIFLTH 74
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTF 109
+GALPY++ K + P++ T + + + + ++R+ F
Sbjct: 75 GHEDAIGALPYLLQK--IKAPVYGTELTIALAKSALKEHRKLRFKNF 119
>gi|307721979|ref|YP_003893119.1| beta-lactamase domain-containing protein [Sulfurimonas autotrophica
DSM 16294]
gi|306980072|gb|ADN10107.1| beta-lactamase domain protein [Sulfurimonas autotrophica DSM 16294]
Length = 466
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 9 SLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKE-LKRHVHHIDAVLLSYPDVAH 67
S T + + C++ +V KI++DCG + D +E ID +L+++ + H
Sbjct: 6 SYGATKEVTGSCHVFEVGGVKIMIDCGMFQGLDEDKNEEAFYFEPASIDYLLVTHAHLDH 65
Query: 68 LGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDL-------FQVRYDTFLK 111
+G +P +V K G I+AT + Q+ + D FQ RY L+
Sbjct: 66 VGRIPKLV-KEGFKGKIYATSATMDLAQIILMDSAKIMNEDFQTRYRKALR 115
>gi|226229328|ref|YP_002763434.1| hypothetical protein GAU_3922 [Gemmatimonas aurantiaca T-27]
gi|226092519|dbj|BAH40964.1| hypothetical protein GAU_3922 [Gemmatimonas aurantiaca T-27]
Length = 465
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 10 LSGTMDE-SPPCYLLQVDEFKILLDCGWDEMF------SMDFVKELKRHVHHIDAVLLSY 62
SG E + C++L+V +LLDCG MF S +L V IDA++LS+
Sbjct: 5 FSGAAQEVTGSCHILRVGNRTVLLDCG---MFQGKRSESRAKNMQLPLPVDEIDAIVLSH 61
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ H G LPY+V + G I+AT + + + D
Sbjct: 62 AHIDHAGRLPYLVAQ-GYKNNIWATSATRDLCAIMLAD 98
>gi|42523510|ref|NP_968890.1| beta-lactamase exonuclease [Bdellovibrio bacteriovorus HD100]
gi|39575716|emb|CAE79883.1| predicted exonuclease of the beta-lactamase family [Bdellovibrio
bacteriovorus HD100]
Length = 452
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 14/93 (15%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKR--------HVHHIDAVLLSYPDVAHLGALP 72
+L+ ++ +IL+DCG + F KEL+ I AV+L++ + H GALP
Sbjct: 17 FLVHNNDTRILVDCGMFQGF-----KELRELNWEDFPFDPRDIQAVVLTHAHLDHCGALP 71
Query: 73 YMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
+V K G PI+ T P ++ ++ + D +++
Sbjct: 72 LLVKK-GFKGPIYCTEPTLELTKIILLDSAKIQ 103
>gi|383754023|ref|YP_005432926.1| hypothetical protein SELR_11950 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366075|dbj|BAL82903.1| hypothetical protein SELR_11950 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 537
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 20 CYLLQVDEFKILLDCGWDEMFS-MDFVKELKRHVH-----HIDAVLLSYPDVAHLGALPY 73
CYLL+ E + L+DCG MF ++EL IDAV+L++ V H G +P
Sbjct: 16 CYLLETQEKQFLIDCG---MFQGARRIRELNYESFPFNPAGIDAVILTHAHVDHCGLIPK 72
Query: 74 MVGKCGLSCPIFATIPVYKMGQMFMYD 100
+V K G ++AT + Q+ + D
Sbjct: 73 LV-KDGFKGTVYATQATCDLAQIMLPD 98
>gi|13541495|ref|NP_111183.1| metal-dependent RNase [Thermoplasma volcanium GSS1]
gi|14324879|dbj|BAB59805.1| cleavage and polyadenylation specificity factor [Thermoplasma
volcanium GSS1]
Length = 639
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG----------WDEMFSMDFVKELKRHVHH 54
+++T+L G + L+ K+L+DCG WD + +V E++ +
Sbjct: 180 VRLTALGGHSEVGRSATLVSTKNSKVLIDCGMMNVGPDADPWDAAPYL-YVPEVQP-LSS 237
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
IDAV+L++ + H G LP + K G P++ T P + + D +V
Sbjct: 238 IDAVILTHAHLDHSGLLPLLF-KYGYDGPVYMTQPTRDLAVLLQDDYIKV 286
>gi|392329432|ref|ZP_10274048.1| Zn-dependent hydrolase [Streptococcus canis FSL Z3-227]
gi|391419304|gb|EIQ82115.1| Zn-dependent hydrolase [Streptococcus canis FSL Z3-227]
Length = 553
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
IKM +L G + YL+++++ +LD G +E +D V + H +
Sbjct: 4 IKMIALGGVREYGKNFYLVEINDSMFILDAGLKYPENEQLGVDLVIPNLDYVIEHKDKVQ 63
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
+ LS+ +GALPY++ + +S P+F + ++ ++F+
Sbjct: 64 GIFLSHGHADAIGALPYLLAE--VSAPVFGSELTIELAKLFV 103
>gi|330809350|ref|YP_004353812.1| beta-lactamase domain-containing protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|423697016|ref|ZP_17671506.1| ribonuclease [Pseudomonas fluorescens Q8r1-96]
gi|327377458|gb|AEA68808.1| Putative beta-lactamase domain-containing protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|388003333|gb|EIK64660.1| ribonuclease [Pseudomonas fluorescens Q8r1-96]
Length = 451
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 14/104 (13%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH--------VHHID 56
++MT L + YLL+ D+ +IL+DCG + + K+L+ H + +D
Sbjct: 1 MRMTFLGAAGTVTGSKYLLEHDDQRILIDCGLFQGY-----KQLRLHNWDPFELPMRDLD 55
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
A++L++ + H G LP +V + G PI+A+ ++ ++ + D
Sbjct: 56 AIVLTHAHLDHSGYLPVLV-RNGYRGPIYASPATCELVKILLRD 98
>gi|156840674|ref|XP_001643716.1| hypothetical protein Kpol_1009p4 [Vanderwaltozyma polyspora DSM
70294]
gi|156114339|gb|EDO15858.1| hypothetical protein Kpol_1009p4 [Vanderwaltozyma polyspora DSM
70294]
Length = 778
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 6 KMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDAVLLS 61
K SL G+ + C++LQ ++LD G + + S+ F E + ID +L+S
Sbjct: 10 KFLSLGGSNEVGRSCHVLQFKGKTVMLDTGIHPAYQGLASLPFYDEFD--LSKIDVLLIS 67
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ + H +LPY++ + +F T P + + + D +V
Sbjct: 68 HFHLDHAASLPYVMKRTNFQGRVFMTHPTKAIYRWLLRDFVRV 110
>gi|336392418|ref|ZP_08573817.1| metallo-beta-lactamase family hydrolase [Lactobacillus
coryniformis subsp. torquens KCTC 3535]
Length = 568
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHV 52
M+S +K+ L G + Y+++VD+ +LDCG +E+ +D V L+ ++
Sbjct: 1 MSSHVKIMPLGGVRENGKNMYVVEVDDEIYILDCGLMYPENELLGIDVVIPDFSYLEENI 60
Query: 53 HHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ + L++ +GALPY + + S P+F +
Sbjct: 61 DRVVGIFLTHGHADAIGALPYFLKQ--HSVPVFGS 93
>gi|255039354|ref|YP_003089975.1| beta-lactamase domain-containing protein [Dyadobacter fermentans
DSM 18053]
gi|254952110|gb|ACT96810.1| beta-lactamase domain protein [Dyadobacter fermentans DSM 18053]
Length = 473
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHH---------- 54
+K+T T + +LL+ D+++IL+DCG D F +D + + R+
Sbjct: 1 MKLTFWGATQQVTGSMFLLESDDYRILIDCGSD--FDLDEIGKKTRYEQQKSVFPFEPSL 58
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
I+ VLL++ + H G +P + K G + T P + + + D
Sbjct: 59 INTVLLTHAHIDHSGNIPNLY-KEGFEGRVVCTEPTMALTSLLLKD 103
>gi|114564754|ref|YP_752268.1| RNA-metabolising metallo-beta-lactamase [Shewanella frigidimarina
NCIMB 400]
gi|114336047|gb|ABI73429.1| RNA-metabolising metallo-beta-lactamase [Shewanella frigidimarina
NCIMB 400]
Length = 490
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 12 GTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH------VHHIDAVLLSYPDV 65
T + + C+LL V ++LLDCG + D L+ H I AV+LS+ +
Sbjct: 10 ATQEVTGSCHLLTVKGQQVLLDCGLIQGSKAD---ALRNHDPFPFDATQIHAVVLSHAHI 66
Query: 66 AHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
H G LPY++ + G + PI+ ++ + + D
Sbjct: 67 DHSGRLPYLINQ-GFTGPIYTQKATAQLCDVMLRD 100
>gi|389857011|ref|YP_006359254.1| beta-lactamase [Streptococcus suis ST1]
gi|353740729|gb|AER21736.1| beta-lactamase domain protein [Streptococcus suis ST1]
Length = 553
Score = 41.6 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y+ +V+E +LD G +E +D V L+ + H
Sbjct: 2 STIKIMALGGVRENGKNLYIAEVNEHIFVLDAGAKYPENEQLGVDVVVPNFDYLEENKHR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V+LS+ +GALPY++ K + P+F +
Sbjct: 62 VAGVILSHGHADAIGALPYLLEK--VKVPVFGS 92
>gi|302380226|ref|ZP_07268698.1| putative ribonuclease [Finegoldia magna ACS-171-V-Col3]
gi|303235047|ref|ZP_07321671.1| RNA-metabolizing metallo-beta-lactamase [Finegoldia magna BVS033A4]
gi|302312009|gb|EFK94018.1| putative ribonuclease [Finegoldia magna ACS-171-V-Col3]
gi|302493902|gb|EFL53684.1| RNA-metabolizing metallo-beta-lactamase [Finegoldia magna BVS033A4]
Length = 539
Score = 41.6 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 56/107 (52%), Gaps = 12/107 (11%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVH------HIDAV 58
+K+T L + + CY+++ ++ K ++DCG +F KEL++ H ++ +
Sbjct: 1 MKITFLGAAQEVTGSCYIVETEKHKFMVDCG---LFQGS--KELEQKNHDEIDFSDVEFM 55
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
LL++ + H G +P ++ K G PI+ T + ++ + D +++
Sbjct: 56 LLTHAHIDHTGRIP-LLYKNGFRKPIYCTKATKDLAEIMLMDSAKIQ 101
>gi|424787947|ref|ZP_18214710.1| metallo-beta-lactamase superfamily protein [Streptococcus
intermedius BA1]
gi|422113297|gb|EKU17043.1| metallo-beta-lactamase superfamily protein [Streptococcus
intermedius BA1]
Length = 553
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y+ +VDE +LD G +E +DFV L +
Sbjct: 2 SNIKLIALGGVRENGKNLYIAEVDESIFILDVGLKYPENEQLGVDFVIPNMDYLFENKDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
I V L++ +GALPY++ + + P+F + ++ ++F+
Sbjct: 62 IAGVFLTHGHADAIGALPYLLAE--IKVPVFGSELTIELAKLFV 103
>gi|392428897|ref|YP_006469908.1| metallo-beta-lactamase [Streptococcus intermedius JTH08]
gi|419776630|ref|ZP_14302552.1| hypothetical protein HMPREF1109_0259 [Streptococcus intermedius
SK54]
gi|383846041|gb|EID83441.1| hypothetical protein HMPREF1109_0259 [Streptococcus intermedius
SK54]
gi|391758043|dbj|BAM23660.1| metallo-beta-lactamase [Streptococcus intermedius JTH08]
Length = 553
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y+ +VDE +LD G +E +DFV L +
Sbjct: 2 SNIKLIALGGVRENGKNLYIAEVDESIFILDVGLKYPENEQLGVDFVIPNMDYLFENKDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
I V L++ +GALPY++ + + P+F + ++ ++F+
Sbjct: 62 IAGVFLTHGHADAIGALPYLLAE--IKVPVFGSELTIELAKLFV 103
>gi|423070185|ref|ZP_17058961.1| hypothetical protein HMPREF9177_00278 [Streptococcus intermedius
F0413]
gi|355366506|gb|EHG14224.1| hypothetical protein HMPREF9177_00278 [Streptococcus intermedius
F0413]
Length = 553
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y+ +VDE +LD G +E +DFV L +
Sbjct: 2 SNIKLIALGGVRENGKNLYIAEVDESIFILDVGLKYPENEQLGVDFVIPNMDYLFENKDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
I V L++ +GALPY++ + + P+F + ++ ++F+
Sbjct: 62 IAGVFLTHGHADAIGALPYLLAE--IKVPVFGSELTIELAKLFV 103
>gi|339448212|ref|ZP_08651768.1| beta-lactamase domain-containing protein [Lactobacillus
fructivorans KCTC 3543]
Length = 573
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKI-LLDCGW----DEMFSMDFV----KELKRH 51
M + IK+ L G + Y +++++ I +LDCG +EM +DFV L+ +
Sbjct: 1 MKNNIKIIPLGGVRENGKDLYAIEINDNSIFILDCGLKYPQNEMLGIDFVIPDFSYLRDN 60
Query: 52 VHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY + + + P+F T
Sbjct: 61 ADKIVGVFLTHGHADAIGALPYFLSE--FNVPVFGT 94
>gi|326803906|ref|YP_004321724.1| hypothetical protein HMPREF9243_1571 [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651674|gb|AEA01857.1| conserved hypothetical protein [Aerococcus urinae
ACS-120-V-Col10a]
Length = 600
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMD-FVKELKRHVHHID- 56
S I + L G ++ YL++V + +LDCG DEM +D + + + H D
Sbjct: 2 SGISIIPLGGVREDGKNMYLVEVKDKIFILDCGLIFPPDEMLGVDIMIPDFTYVIEHKDK 61
Query: 57 --AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
V LS+ +GALPY++ + ++ P+F T
Sbjct: 62 VAGVFLSHGHADAIGALPYLLKE--VNVPVFGT 92
>gi|397690632|ref|YP_006527886.1| beta-lactamase domain protein [Melioribacter roseus P3M]
gi|395812124|gb|AFN74873.1| beta-lactamase domain protein [Melioribacter roseus P3M]
Length = 454
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 12/81 (14%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDC-------GWDEMFSMDFVKELKRHVHHID 56
+IK S+ G + Y LQ+D ILLDC G D + D ++ + +D
Sbjct: 1 MIKFLSIGGAREVGANSYYLQIDGTGILLDCGIHPRKKGLDSLPLFDLLEN-----YPLD 55
Query: 57 AVLLSYPDVAHLGALPYMVGK 77
V++S+ H+GALP+++ K
Sbjct: 56 FVIISHAHQDHVGALPFLIKK 76
>gi|149173952|ref|ZP_01852581.1| exonuclease of the beta-lactamase fold involved in RNA processing
[Planctomyces maris DSM 8797]
gi|148847482|gb|EDL61816.1| exonuclease of the beta-lactamase fold involved in RNA processing
[Planctomyces maris DSM 8797]
Length = 464
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVH---HIDAVLLS 61
+K+T L + + +L++ D +ILLDCG + + + R + +DAV LS
Sbjct: 1 MKITFLGAAGEVTGSQHLIETDSRRILLDCGLFQGHRQESYLKNSRFAYPPESLDAVFLS 60
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ + H G LP + K G P+F T + ++ + D
Sbjct: 61 HGHMDHCGNLPRLFNK-GFRGPVFCTSATADIAEIMLKD 98
>gi|20807203|ref|NP_622374.1| RNA processing exonuclease [Thermoanaerobacter tengcongensis MB4]
gi|20515705|gb|AAM23978.1| predicted exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacter tengcongensis MB4]
Length = 541
Score = 41.6 bits (96), Expect = 0.059, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-------DEMFSMDFVKELKRHVHHIDA 57
+K+T L + + CYL++ + + L+DCG DE+ +F+ ++K ID
Sbjct: 1 MKITFLGAAKEVTGSCYLVETENARFLVDCGMFQGGEVEDELNYQEFIFDIK----DIDF 56
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
VLL++ + H G +P + K G I+AT
Sbjct: 57 VLLTHAHIDHSGRIPVLY-KRGYRKRIYAT 85
>gi|387814932|ref|YP_005430419.1| metallo-beta-lactamase [Marinobacter hydrocarbonoclasticus ATCC
49840]
gi|381339949|emb|CCG95996.1| putative RNAse with metallo-beta-lactamase-like domain
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 473
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 20 CYLLQVDEFKILLDCGW---DEMFSMDFVKELKRH--VHHIDAVLLSYPDVAHLGALPYM 74
C+ LQV +F IL+DCG E + EL + HI A+++++ + H+G +PY+
Sbjct: 17 CHELQVSDFGILIDCGLFQGKEKGAASSATELAIDFPIDHIRALVVTHVHIDHVGRIPYL 76
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
+ G PI + P M + D ++ +
Sbjct: 77 LA-AGFEGPIICSEPSAIMLPEILEDALKIGF 107
>gi|210608670|ref|ZP_03287947.1| hypothetical protein CLONEX_00126 [Clostridium nexile DSM 1787]
gi|210152927|gb|EEA83933.1| hypothetical protein CLONEX_00126 [Clostridium nexile DSM 1787]
Length = 535
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+K+T + + + C+LL+ + IL+DCG ++ + +EL ID +LL++
Sbjct: 1 MKLTFIGAAHEVTGSCHLLETNGKHILIDCGMEQGPDLYENQELPIAPGDIDFILLTHAH 60
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ H G +P MV K G I T + + + D
Sbjct: 61 IDHSGLIPLMV-KNGFKGQIVTTFATADLCDIMLRD 95
>gi|406835261|ref|ZP_11094855.1| beta-lactamase [Schlesneria paludicola DSM 18645]
Length = 464
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVH------HIDAV 58
+K+T L + + +L++ D +ILLDCG +F + ++ H ID V
Sbjct: 1 MKITFLGAAGEVTGSQHLIETDSHRILLDCG---LFQGHRTESRLKNEHFYCDPKSIDGV 57
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+LS+ H G LP + K G PIF T + + ++D
Sbjct: 58 ILSHAHADHCGNLPGLY-KAGYRGPIFCTPATADVADVMLHD 98
>gi|451818074|ref|YP_007454275.1| ribonuclease J 1 [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451784053|gb|AGF55021.1| ribonuclease J 1 [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 555
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
IK+ L G + ++ E I++DCG D+MF +D V L ++V I
Sbjct: 8 IKIIPLGGINEIGKNITAIEYKEDIIVIDCGLKFPDDDMFGIDIVIPDVSYLIKNVEKIK 67
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ L++ H+GALPY++ + L+ P++ T
Sbjct: 68 GIFLTHGHEDHIGALPYVLRQ--LNVPVYGT 96
>gi|448732507|ref|ZP_21714783.1| beta-lactamase [Halococcus salifodinae DSM 8989]
gi|445804621|gb|EMA54862.1| beta-lactamase [Halococcus salifodinae DSM 8989]
Length = 541
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79
C+ + V + L+DCG + + ++ +DAV L++ V H+GALP +
Sbjct: 40 CFEIDVGDRTYLVDCGIKQGYKTEYPLFRGLGPGEVDAVFLTHAHVDHIGALPVAEQRGL 99
Query: 80 LS--CPIFATIPVYKMGQMFMYDLFQV 104
L+ PI AT P + + ++D ++
Sbjct: 100 LADDAPIIATRPTNALAHILLHDSLKI 126
>gi|319790325|ref|YP_004151958.1| RNA-metabolising metallo-beta-lactamase [Thermovibrio ammonificans
HB-1]
gi|317114827|gb|ADU97317.1| RNA-metabolising metallo-beta-lactamase [Thermovibrio ammonificans
HB-1]
Length = 457
Score = 41.6 bits (96), Expect = 0.063, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 20 CYLLQVDEFKILLDCGW----DEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMV 75
C+L++ + LLDCG +E+ D + +D V+LS+ + H G LPY+V
Sbjct: 16 CHLVEAGGVRFLLDCGLFQGSEEL--EDLNPKFTFDPSEVDFVILSHGHLDHCGRLPYLV 73
Query: 76 GKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
K G + I+AT + + + D QV+
Sbjct: 74 KK-GFNGKIYATSGTVDIAHLILLDAAQVQ 102
>gi|336121952|ref|YP_004576727.1| KH-domain/beta-lactamase-domain-containing protein
[Methanothermococcus okinawensis IH1]
gi|334856473|gb|AEH06949.1| KH-domain/beta-lactamase-domain protein [Methanothermococcus
okinawensis IH1]
Length = 635
Score = 41.6 bits (96), Expect = 0.063, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG------WDEMFSMDFVKELKRHVHHIDAV 58
I+M+ L G + C LQ E +IL+DCG D+ F E + IDAV
Sbjct: 180 IRMSFLGGAREVGRTCNYLQTPESRILIDCGINVAIDGDKAFPHFDAPEFS--IEEIDAV 237
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++++ + H G +P + + G P++ + P + + D +
Sbjct: 238 VITHAHLDHCGFVPGLF-RYGYDGPVYCSKPTRDLMTLLQKDYLDI 282
>gi|329767412|ref|ZP_08258937.1| hypothetical protein HMPREF0428_00634 [Gemella haemolysans M341]
gi|328836101|gb|EGF85792.1| hypothetical protein HMPREF0428_00634 [Gemella haemolysans M341]
Length = 619
Score = 41.6 bits (96), Expect = 0.063, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
I++T L G + + Y++++ + +LD G EM +D V L R+ I
Sbjct: 72 IRITPLGGVEEVAKNMYMVEIGDEIYVLDAGLMFPETEMIGIDAVIPDISYLVRNKQKIK 131
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ LS V+ +GA+PY++ K L CP++ +
Sbjct: 132 GIFLSNGHVSSMGAVPYIIDK--LKCPVYGS 160
>gi|329768910|ref|ZP_08260337.1| hypothetical protein HMPREF0433_00101 [Gemella sanguinis M325]
gi|328836627|gb|EGF86285.1| hypothetical protein HMPREF0433_00101 [Gemella sanguinis M325]
Length = 631
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
I++T L G + + Y++++ + +LD G EM +D V L R+ +
Sbjct: 84 IRITPLGGVEEVAKNMYMVEIADEIFVLDAGLMFPETEMIGIDAVIPDISYLVRNKQKVK 143
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ LS V+ +GA+PY++ K L CP++ +
Sbjct: 144 GIFLSNGHVSSMGAIPYIIDK--LKCPVYGS 172
>gi|46360445|gb|AAS80153.1| ACT11D09.9 [Cucumis melo]
Length = 708
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 20 CYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDAVLLSYPDVAHLGALP 72
C ++ ++ +I+ DCG D DF + + + + + +++++ + H+GALP
Sbjct: 50 CVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASRDYNNTLSCIIITHFHLDHIGALP 109
Query: 73 YMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
Y CG + PI+ T P + + + D +V D
Sbjct: 110 YFTEICGYNGPIYMTYPTMALAPITLEDYRKVMVD 144
>gi|225389087|ref|ZP_03758811.1| hypothetical protein CLOSTASPAR_02833 [Clostridium asparagiforme
DSM 15981]
gi|225044851|gb|EEG55097.1| hypothetical protein CLOSTASPAR_02833 [Clostridium asparagiforme
DSM 15981]
Length = 535
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+K+T + + + C+ L+V K+L+DCG ++ ++ L + ID VLL++
Sbjct: 3 MKLTFIGADHEVTGSCHYLEVGNTKLLVDCGMEQGNNVYENAPLPVPYNQIDYVLLTHAH 62
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ H G LP++ K G I T + + + D
Sbjct: 63 IDHAGLLPWLYAK-GFKGRIITTYATADLCNIMLVD 97
>gi|88602138|ref|YP_502316.1| beta-lactamase-like protein [Methanospirillum hungatei JF-1]
gi|88187600|gb|ABD40597.1| beta-lactamase-like protein [Methanospirillum hungatei JF-1]
Length = 629
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD----EMFSMDFVKELKRHVHHIDAVLL 60
I++T+L + +LL E ++L+DCG E +V E+ + +DAV+L
Sbjct: 179 IRVTTLGCCREVGRAAFLLSTPESRVLIDCGEKPDSFEATPYLYVPEI-HPLSQLDAVVL 237
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++ + H +P ++ K G P+++T P + M D V
Sbjct: 238 THAHLDHCAYIP-LLYKYGYEGPVYSTPPTRDLAAMLQLDYLDV 280
>gi|363423474|ref|ZP_09311539.1| beta-lactamase-like protein [Rhodococcus pyridinivorans AK37]
gi|359731723|gb|EHK80759.1| beta-lactamase-like protein [Rhodococcus pyridinivorans AK37]
Length = 550
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 20 CYLLQVDEFKILLDCG-WDEMFSMDF--VKELKRHVHHIDAVLLSYPDVAHLGALPYMVG 76
C +++ + +IL+DCG + S++ V E +DAV+L++ + H G LP +V
Sbjct: 20 CATVELGDARILIDCGLFQGSRSLENLNVAEFAFPPESVDAVILTHAHIDHCGLLPKLVA 79
Query: 77 KCGLSCPIFATIPVYKMGQMFMYD 100
+ G PIF T P ++ + D
Sbjct: 80 R-GFDGPIFCTAPTAELLSFMLAD 102
>gi|302874710|ref|YP_003843343.1| RNA-metabolising metallo-beta-lactamase [Clostridium cellulovorans
743B]
gi|307690677|ref|ZP_07633123.1| RNA-metabolising metallo-beta-lactamase [Clostridium cellulovorans
743B]
gi|302577567|gb|ADL51579.1| RNA-metabolising metallo-beta-lactamase [Clostridium cellulovorans
743B]
Length = 559
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ L G + L++ + I++DCG DEMF +D V L ++
Sbjct: 10 SKIKIIPLGGISEIGKNMTLIEYKDELIIVDCGLKFPEDEMFGIDLVIPDITYLLKNKDR 69
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I + L++ H+GALPY++ + ++ P++ T
Sbjct: 70 IKGIFLTHGHEDHIGALPYILKQ--INIPVYGT 100
>gi|187926558|ref|YP_001892903.1| beta-lactamase [Ralstonia pickettii 12J]
gi|241666068|ref|YP_002984427.1| beta-lactamase [Ralstonia pickettii 12D]
gi|187728312|gb|ACD29476.1| beta-lactamase domain protein [Ralstonia pickettii 12J]
gi|240868095|gb|ACS65755.1| beta-lactamase domain protein [Ralstonia pickettii 12D]
Length = 454
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVK---ELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
Y+L+ ++++DCG + + ++ +L + HHIDAV+L++ + H G LP +V +
Sbjct: 17 YVLETGAHRVMVDCGLFQGYKSLRLRNWDKLAVNPHHIDAVVLTHAHIDHSGYLPLLV-R 75
Query: 78 CGLSCPIFATIPVYKMGQMFMYD 100
G P++ T ++ + + D
Sbjct: 76 NGFHGPVYCTKGTAELCNILLPD 98
>gi|417926423|ref|ZP_12569822.1| beta-Casp domain protein [Finegoldia magna SY403409CC001050417]
gi|341589273|gb|EGS32555.1| beta-Casp domain protein [Finegoldia magna SY403409CC001050417]
Length = 539
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 56/107 (52%), Gaps = 12/107 (11%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVH------HIDAV 58
+K+T L + + CY+++ ++ K ++DCG +F KEL++ H ++ +
Sbjct: 1 MKITFLGAAQEVTGSCYVVETEKHKFMVDCG---LFQGS--KELEQKNHDEIDFSDVEFM 55
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
LL++ + H G +P ++ K G PI+ T + ++ + D +++
Sbjct: 56 LLTHAHIDHTGRIP-LLYKNGFRKPIYCTKATKDLAEIMLMDSAKIQ 101
>gi|169824737|ref|YP_001692348.1| putative metallo-beta-lactamase superfamily protein [Finegoldia
magna ATCC 29328]
gi|167831542|dbj|BAG08458.1| putative metallo-beta-lactamase superfamily protein [Finegoldia
magna ATCC 29328]
Length = 539
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 56/107 (52%), Gaps = 12/107 (11%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVH------HIDAV 58
+K+T L + + CY+++ ++ K ++DCG +F KEL++ H ++ +
Sbjct: 1 MKITFLGAAQEVTGSCYVVETEKHKFMVDCG---LFQGS--KELEQKNHDEIDFSDVEFM 55
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
LL++ + H G +P ++ K G PI+ T + ++ + D +++
Sbjct: 56 LLTHAHIDHTGRIP-LLYKNGFRKPIYCTKATKDLAEIMLMDSAKIQ 101
>gi|335047442|ref|ZP_08540463.1| hypothetical protein HMPREF9126_0438 [Parvimonas sp. oral taxon
110 str. F0139]
gi|333761250|gb|EGL38805.1| hypothetical protein HMPREF9126_0438 [Parvimonas sp. oral taxon
110 str. F0139]
Length = 556
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
+KM L G + +L+ D+ I+LDCG D+M +D V L +++ +
Sbjct: 9 LKMIPLGGVGEIGKNMSILEYDDEIIILDCGMTFPDDDMPGIDIVIPDITYLMKNIDRVK 68
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
A+ L++ H+G++PY++ K ++ P++ T
Sbjct: 69 ALFLTHGHEDHIGSVPYILKK--INVPVYGT 97
>gi|407788144|ref|ZP_11135279.1| beta-lactamase domain-containing protein [Celeribacter
baekdonensis B30]
gi|407198162|gb|EKE68203.1| beta-lactamase domain-containing protein [Celeribacter
baekdonensis B30]
Length = 471
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 6 KMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS------MDFVKELKRHVHHIDAVL 59
K++ L + + C+L++ E + L+DCG MF K ID VL
Sbjct: 4 KISFLGAAREVTGSCFLVETGEVRFLIDCG---MFQGGREAPARNRKPFGFDPESIDFVL 60
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFAT 87
L++ + H G LP + K G + PIFAT
Sbjct: 61 LTHAHIDHSGLLPKLT-KAGFTGPIFAT 87
>gi|153811282|ref|ZP_01963950.1| hypothetical protein RUMOBE_01674 [Ruminococcus obeum ATCC 29174]
gi|149832780|gb|EDM87864.1| metallo-beta-lactamase domain protein [Ruminococcus obeum ATCC
29174]
Length = 539
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+K+T + T + + CY L+ K L+DCG ++ +++ +D VLL++
Sbjct: 1 MKITFIGATHEVTGSCYYLEAAGKKFLVDCGMEQGPDYYENQDIPVKGSDLDFVLLTHAH 60
Query: 65 VAHLGALPYMVGKCGLSCPIFAT 87
+ H G LP + K G PI+AT
Sbjct: 61 MDHSGNLPAIYAK-GFQGPIYAT 82
>gi|451948972|ref|YP_007469567.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Desulfocapsa sulfexigens DSM 10523]
gi|451908320|gb|AGF79914.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Desulfocapsa sulfexigens DSM 10523]
Length = 503
Score = 41.2 bits (95), Expect = 0.070, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 7 MTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKR---HVHHIDAVLLSYP 63
+ L G + C+LL D+ KIL+DCG + + D VK L H ID + L++
Sbjct: 54 LIHLGGKDSVTGSCHLLVADDVKILVDCGTAQGY--DNVKSLTEWPIHPSDIDYLFLTHA 111
Query: 64 DVAHLGALPYMV 75
+ H+G LP ++
Sbjct: 112 HIDHIGRLPELI 123
>gi|254478890|ref|ZP_05092253.1| RNA-metabolising metallo-beta-lactamase family protein
[Carboxydibrachium pacificum DSM 12653]
gi|214035156|gb|EEB75867.1| RNA-metabolising metallo-beta-lactamase family protein
[Carboxydibrachium pacificum DSM 12653]
Length = 541
Score = 41.2 bits (95), Expect = 0.070, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-------DEMFSMDFVKELKRHVHHIDA 57
+K+T L + + CYL++ + + L+DCG DE+ +F+ ++K ID
Sbjct: 1 MKITFLGAAKEVTGSCYLVKTENARFLVDCGMFQGGEVEDELNYQEFIFDIK----DIDF 56
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
VLL++ + H G +P + K G I+AT
Sbjct: 57 VLLTHAHIDHSGRIPVLY-KRGYRKRIYAT 85
>gi|391330858|ref|XP_003739869.1| PREDICTED: integrator complex subunit 11-like [Metaseiulus
occidentalis]
Length = 601
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFSMDF--VKELKRHVHHI 55
S I +T L D C L+ + I+LDCG DE DF + +
Sbjct: 2 SEITITPLGAGQDVGRSCILISMGGKNIMLDCGMHMGYQDERRFPDFSYINNGGPLDDFL 61
Query: 56 DAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
D V++S+ + H GALP+M G + PI+ T P + + + D ++ D
Sbjct: 62 DCVIISHFHLDHCGALPFMSEMIGYTGPIYMTHPTKAICPILLEDFRKICVD 113
>gi|399024279|ref|ZP_10726323.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Chryseobacterium sp. CF314]
gi|398080819|gb|EJL71614.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Chryseobacterium sp. CF314]
Length = 455
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 24/111 (21%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCG------------WDEMFSMDFVKELK 49
T IIK +GT+ S +LL+ E IL+DCG W E S+D +
Sbjct: 3 TMIIKSLGGAGTVTGSK--HLLKTSELTILIDCGLFQGVKALREQNW-ESLSIDLAE--- 56
Query: 50 RHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
ID V+L++ + H G +P +V K G ++ T P ++ ++ + D
Sbjct: 57 -----IDIVILTHAHLDHCGYIPLLV-KNGFKGKVYMTEPTKELAKLILLD 101
>gi|344283025|ref|XP_003413273.1| PREDICTED: integrator complex subunit 11-like [Loxodonta africana]
Length = 719
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 14 MDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDAVLLSYPDVA 66
D C L+ V ++LDCG F+ D ++ + R +D V++S+ +
Sbjct: 132 QDVGRSCILVSVAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLD 191
Query: 67 HLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
H GALPY G PI+ T P + + + D ++ D
Sbjct: 192 HCGALPYFSEMVGYDGPIYMTPPTQAICPILLEDYRKIAVD 232
>gi|289523960|ref|ZP_06440814.1| metallo-beta-lactamase family protein [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289502616|gb|EFD23780.1| metallo-beta-lactamase family protein [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 527
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 19/90 (21%)
Query: 21 YLLQVDEFKILLDCGW----------DEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGA 70
YLL+ DE ++L+DCG E F D K +DA+LL++ + H G
Sbjct: 17 YLLEHDEKRVLIDCGIFQGRDEDRKNSEPFPFDASK--------VDALLLTHAHLDHSGR 68
Query: 71 LPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+P +V K G I+AT P ++ ++ D
Sbjct: 69 VPLLV-KRGFRGKIYATTPTLELCEILWRD 97
>gi|300121617|emb|CBK22135.2| unnamed protein product [Blastocystis hominis]
Length = 545
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSM-DFVKELKRH-VHHIDAV 58
I +T L G C+LL V + +LLDCG D ++ DF K K V+ I AV
Sbjct: 3 ISLTVLGGGQSIGKSCFLLSVGDQHVLLDCGSFVGKDTKKALPDFSKLPKSMTVNDITAV 62
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIP 89
L+S+ + H+G L Y+ + I+A+ P
Sbjct: 63 LISHFHMDHIGGLLYLTEQLKYKGDIYASSP 93
>gi|386586586|ref|YP_006082988.1| beta-lactamase [Streptococcus suis D12]
gi|353738732|gb|AER19740.1| beta-lactamase domain protein [Streptococcus suis D12]
Length = 553
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y+ +V+E +LD G +E +D V L+ + H
Sbjct: 2 STIKIMALGGVRENGKNLYIAEVNEHIFVLDAGAKYPENEQLGVDVVVPNFDYLEENKHR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V LS+ +GALPY++ K + P+F +
Sbjct: 62 VAGVFLSHGHADAIGALPYLLEK--VKVPVFGS 92
>gi|417089231|ref|ZP_11955422.1| beta-lactamase domain protein [Streptococcus suis R61]
gi|353534180|gb|EHC03812.1| beta-lactamase domain protein [Streptococcus suis R61]
Length = 553
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y+ +V+E +LD G +E +D V L+ + H
Sbjct: 2 STIKIMALGGVRENGKNLYIAEVNEHIFVLDAGAKYPENEQLGVDVVVPNFDYLEENKHR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V LS+ +GALPY++ K + P+F +
Sbjct: 62 VAGVFLSHGHADAIGALPYLLEK--VKVPVFGS 92
>gi|146321340|ref|YP_001201051.1| metallo-beta-lactamase superfamily hydrolase [Streptococcus suis
98HAH33]
gi|386578308|ref|YP_006074714.1| Beta-lactamase-like: RNA-metabolising metallo-beta-lactamase
[Streptococcus suis GZ1]
gi|145692146|gb|ABP92651.1| Predicted hydrolase of the metallo-beta-lactamase superfamily
[Streptococcus suis 98HAH33]
gi|292558771|gb|ADE31772.1| Beta-lactamase-like: RNA-metabolising metallo-beta-lactamase
[Streptococcus suis GZ1]
Length = 570
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y+ +V+E +LD G +E +D V L+ + H
Sbjct: 19 STIKIMALGGVRENGKNLYIAEVNEHIFVLDAGAKYPENEQLGVDVVVPNFDYLEENKHR 78
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V LS+ +GALPY++ K + P+F +
Sbjct: 79 VAGVFLSHGHADAIGALPYLLEK--VKVPVFGS 109
>gi|146319134|ref|YP_001198846.1| metallo-beta-lactamase superfamily hydrolase [Streptococcus suis
05ZYH33]
gi|145689940|gb|ABP90446.1| Predicted hydrolase of the metallo-beta-lactamase superfamily
[Streptococcus suis 05ZYH33]
Length = 570
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y+ +V+E +LD G +E +D V L+ + H
Sbjct: 19 STIKIMALGGVRENGKNLYIAEVNEHIFVLDAGAKYPENEQLGVDVVVPNFDYLEENKHR 78
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V LS+ +GALPY++ K + P+F +
Sbjct: 79 VAGVFLSHGHADAIGALPYLLEK--VKVPVFGS 109
>gi|223932550|ref|ZP_03624551.1| beta-lactamase domain protein [Streptococcus suis 89/1591]
gi|253752183|ref|YP_003025324.1| metallo-beta-lactamase superfamily protein [Streptococcus suis
SC84]
gi|253754009|ref|YP_003027150.1| metallo-beta-lactamase superfamily protein [Streptococcus suis
P1/7]
gi|253755943|ref|YP_003029083.1| metallo-beta-lactamase superfamily protein [Streptococcus suis
BM407]
gi|330833129|ref|YP_004401954.1| beta-lactamase domain-containing protein [Streptococcus suis ST3]
gi|386580378|ref|YP_006076783.1| beta-lactamase [Streptococcus suis JS14]
gi|386582392|ref|YP_006078796.1| beta-lactamase [Streptococcus suis SS12]
gi|386584521|ref|YP_006080924.1| beta-lactamase [Streptococcus suis D9]
gi|386588578|ref|YP_006084979.1| beta-lactamase [Streptococcus suis A7]
gi|403061947|ref|YP_006650163.1| beta-lactamase [Streptococcus suis S735]
gi|223898821|gb|EEF65181.1| beta-lactamase domain protein [Streptococcus suis 89/1591]
gi|251816472|emb|CAZ52108.1| metallo-beta-lactamase superfamily protein [Streptococcus suis
SC84]
gi|251818407|emb|CAZ56236.1| metallo-beta-lactamase superfamily protein [Streptococcus suis
BM407]
gi|251820255|emb|CAR46707.1| metallo-beta-lactamase superfamily protein [Streptococcus suis
P1/7]
gi|319758570|gb|ADV70512.1| beta-lactamase domain protein [Streptococcus suis JS14]
gi|329307352|gb|AEB81768.1| beta-lactamase domain protein [Streptococcus suis ST3]
gi|353734538|gb|AER15548.1| beta-lactamase domain protein [Streptococcus suis SS12]
gi|353736667|gb|AER17676.1| beta-lactamase domain protein [Streptococcus suis D9]
gi|354985739|gb|AER44637.1| beta-lactamase domain protein [Streptococcus suis A7]
gi|402809273|gb|AFR00765.1| beta-lactamase [Streptococcus suis S735]
Length = 553
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y+ +V+E +LD G +E +D V L+ + H
Sbjct: 2 STIKIMALGGVRENGKNLYIAEVNEHIFVLDAGAKYPENEQLGVDVVVPNFDYLEENKHR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ V LS+ +GALPY++ K + P+F +
Sbjct: 62 VAGVFLSHGHADAIGALPYLLEK--VKVPVFGS 92
>gi|255024259|ref|ZP_05296245.1| hypothetical protein LmonocyFSL_13989 [Listeria monocytogenes FSL
J1-208]
Length = 178
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Query: 12 GTMDES-PPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHIDAVLLSY 62
G +DES Y++++DE +LD G +E+ +D V K L+ + + A+ L++
Sbjct: 15 GGVDESGKNLYVVEIDEDIFILDAGLMFPENELLGIDIVIPDFKYLEENKDRVKAIFLTH 74
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTF 109
+GALPY++ K + P++ T + + + + ++R+ F
Sbjct: 75 GHEDAIGALPYLLQK--IKAPVYGTELTIALAKSALKEHRKLRFKNF 119
>gi|300707669|ref|XP_002996033.1| hypothetical protein NCER_100929 [Nosema ceranae BRL01]
gi|239605293|gb|EEQ82362.1| hypothetical protein NCER_100929 [Nosema ceranae BRL01]
Length = 632
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M +II L T E C+LL ++ +IL++CG D F + +EL ++ D +L+
Sbjct: 1 MKNIITFEPLIETFKEVY-CHLLTINNTRILINCGGDLSF---YTQELLNIINSCDCILV 56
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMF----MYDLFQVRY 106
+ D A + L ++ + G P++ ++P+ + +F ++F+++Y
Sbjct: 57 TSFDSACINGLWTILDR-GYFKPVYMSVPIKEYSLIFHPFEYKNIFEIKY 105
>gi|259046429|ref|ZP_05736830.1| metallo-beta-lactamase superfamily protein [Granulicatella
adiacens ATCC 49175]
gi|259036917|gb|EEW38172.1| metallo-beta-lactamase superfamily protein [Granulicatella
adiacens ATCC 49175]
Length = 557
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y ++V+E +LDCG DE+ +D V L+ +
Sbjct: 2 SSIKIIALGGVRENGKSLYAVEVEEDIFVLDCGLVYPEDELLGIDVVIPDFSYLEENKER 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY + + P+F +
Sbjct: 62 IAGVFLTHGHADAVGALPYFLQN--IDAPVFGS 92
>gi|444424461|ref|ZP_21219917.1| hypothetical protein B878_00889 [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444242167|gb|ELU53682.1| hypothetical protein B878_00889 [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 449
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 14/121 (11%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVK-----ELKRHVHHI 55
++ I +T G + C+ L++ IL+DCG + + F +++ V HI
Sbjct: 5 ISDIASVTHHGGKHTVTGSCHELKLPHGSILIDCGLFQGKDIHFGNRRASLDIEFPVKHI 64
Query: 56 DAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLT 115
A++L++ + H+G LP+++ G PI+ T ++ + + D LKLLL
Sbjct: 65 KALVLTHAHIDHIGRLPWLLA-AGFKGPIYCTKATAELVPLMLED--------GLKLLLG 115
Query: 116 L 116
L
Sbjct: 116 L 116
>gi|392392777|ref|YP_006429379.1| flavoprotein [Desulfitobacterium dehalogenans ATCC 51507]
gi|390523855|gb|AFL99585.1| putative flavoprotein [Desulfitobacterium dehalogenans ATCC 51507]
Length = 396
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKRHV--HHIDAVLLSYPDVAHLGALPYMVGKC 78
YL++ DE +L+D W E F +FV +LK+ + ID +++++ +V H GALP+++ +
Sbjct: 38 YLIR-DEKTVLIDTVW-EPFGREFVDKLKQEIDLKEIDYIIMNHNEVDHSGALPFLMEEI 95
Query: 79 GLSCPIFAT 87
+ PI+ T
Sbjct: 96 P-NTPIYCT 103
>gi|390945130|ref|YP_006408891.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Belliella baltica DSM 15883]
gi|390418558|gb|AFL86136.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Belliella baltica DSM 15883]
Length = 466
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKR---HVHHIDAVLLS 61
+K+ L G + YLL+++ +K+L+DCG + V+ + ID V+L+
Sbjct: 3 VKVKFLGGAGTVTGSRYLLEINNYKVLVDCGMFQGLKDYRVRNWEAFPISPSEIDMVILT 62
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ + H G LP +V K G PI+ T ++ ++ + D
Sbjct: 63 HAHIDHSGYLPKLV-KEGFRGPIYGTEATLELIKILLLD 100
>gi|333897915|ref|YP_004471789.1| beta-lactamase [Thermoanaerobacterium xylanolyticum LX-11]
gi|333113180|gb|AEF18117.1| beta-lactamase domain protein [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 820
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELK--RHVHHIDAVLLSY 62
+K G + CYL+ +D ILLDCG D + + + + +D +L+S+
Sbjct: 1 MKFYFCGGASEVGASCYLVNIDGKNILLDCGIRMASGKDNLPDFQLIQENGGVDVILISH 60
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ H+GALP ++ + I+ T + ++ +YD ++
Sbjct: 61 AHMDHIGALP-ILSRIYPDAKIYMTHAAKDLTRVLLYDSLKI 101
>gi|219851430|ref|YP_002465862.1| beta-lactamase [Methanosphaerula palustris E1-9c]
gi|219545689|gb|ACL16139.1| beta-lactamase domain protein [Methanosphaerula palustris E1-9c]
Length = 630
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-----FVKELKRHVHHIDAVL 59
+++T+L + +LL E K+L+DCG + + +V E+ + +DAV+
Sbjct: 179 VRVTTLGCCREVGRAAFLLSTPESKVLIDCGEKPDNNNNGTPYLYVPEI-HPLSQLDAVV 237
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
L++ + H +P ++ K G P+++T P + M D +V
Sbjct: 238 LTHAHLDHCALIP-LLYKYGYEGPVYSTPPTRDLASMLQLDYLEV 281
>gi|452851057|ref|YP_007492741.1| Beta-lactamase domain protein [Desulfovibrio piezophilus]
gi|451894711|emb|CCH47590.1| Beta-lactamase domain protein [Desulfovibrio piezophilus]
Length = 535
Score = 41.2 bits (95), Expect = 0.081, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDA------- 57
+K+T + S CY+++ + LDCG + KE+++ + DA
Sbjct: 1 MKITFMGAARTVSGSCYIIECGGKRFALDCGLHQG-----NKEIEKRNRNFDAYGAKNLD 55
Query: 58 -VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+L+++ + H G LP +V K G PI+ T P + ++ + D
Sbjct: 56 FILITHAHIDHSGLLPALVAK-GFKNPIYCTAPTRDLLEIMLLD 98
>gi|256084683|ref|XP_002578556.1| cleavage and polyadenylation specificity factor [Schistosoma
mansoni]
gi|350644758|emb|CCD60512.1| cleavage and polyadenylation specificity factor,putative
[Schistosoma mansoni]
Length = 619
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHI 55
S I++ L D C L+ + I+ DCG ++ D ++ + ++
Sbjct: 2 SSIRVIPLGAGQDVGRSCILVTLGGKNIMFDCGMHMGYNDDRKFPDFTYITDKGGLNEYL 61
Query: 56 DAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
D V++S+ + H GALPYM G PI+ T P + + + D ++ +
Sbjct: 62 DCVIISHFHLDHCGALPYMTEVIGYDGPIYMTHPTKAICPILLEDYRKINVE 113
>gi|398347264|ref|ZP_10531967.1| metallo-beta-lactamase superfamily protein [Leptospira broomii str.
5399]
Length = 459
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELK--------RHVHHIDAVLLSYPDVAHLGALP 72
YLL V IL+DCG +F VKEL+ ID +LL++ + H G LP
Sbjct: 22 YLLTVLGKNILIDCG---LFQG--VKELRLRNWDVLPAEAEKIDVILLTHGHLDHTGYLP 76
Query: 73 YMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+V K G S I AT P + ++ + D
Sbjct: 77 RLV-KSGFSGSILATAPTLDVAEIILKD 103
>gi|424887341|ref|ZP_18310946.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Rhizobium leguminosarum bv. trifolii
WSM2012]
gi|393175113|gb|EJC75156.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Rhizobium leguminosarum bv. trifolii
WSM2012]
Length = 543
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 20 CYLLQVDEFKILLDCGWDEMFS-------MDFVKELKRHVHHIDAVLLSYPDVAHLGALP 72
C+LL+ +IL+DCG MF +++ K L +DAVLL++ + H G LP
Sbjct: 19 CFLLETLGGRILVDCG---MFQGSKSEKELNY-KPLPFDPEKVDAVLLTHAHIDHSGLLP 74
Query: 73 YMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ K G P+FAT + + + D
Sbjct: 75 KL-AKAGYGGPVFATAATIDLCTIMLQD 101
>gi|313680726|ref|YP_004058465.1| RNA-metabolising metallo-beta-lactamase [Oceanithermus profundus
DSM 14977]
gi|313153441|gb|ADR37292.1| RNA-metabolising metallo-beta-lactamase [Oceanithermus profundus
DSM 14977]
Length = 447
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 20 CYLLQVDEFKILLDCG-WDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKC 78
C+LL+ FK+LLDCG + D +DAV+LS+ + H+G +P + +
Sbjct: 16 CHLLEHQGFKLLLDCGMYQGEPRSDNYDPFGFDPRAVDAVVLSHAHLDHVGRIPRLY-RL 74
Query: 79 GLSCPIFATIPVYKMGQMFMYDLFQV 104
G ++AT P K+ + + D ++
Sbjct: 75 GFEGRVYATAPTLKLIRPILEDALKL 100
>gi|160933971|ref|ZP_02081358.1| hypothetical protein CLOLEP_02833 [Clostridium leptum DSM 753]
gi|156866644|gb|EDO60016.1| metallo-beta-lactamase domain protein [Clostridium leptum DSM
753]
Length = 539
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+K+T L + + CYLL+ IL+DCG ++ +E+ ID VLL++
Sbjct: 8 MKLTFLGAAHEVTGSCYLLEACGKTILIDCGMEQGPDEYENQEIPVSPSSIDWVLLTHAH 67
Query: 65 VAHLGALPYMVGKCGLSCPIFAT 87
+ H G LP + G IFAT
Sbjct: 68 IDHSGRLPLLYAH-GFRGKIFAT 89
>gi|397639513|gb|EJK73612.1| hypothetical protein THAOC_04754 [Thalassiosira oceanica]
Length = 454
Score = 41.2 bits (95), Expect = 0.084, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDC----GWDEMFSMDFVKELKRHVHHID 56
M +++T L + C+LL +LLDC G+D M + F + +D
Sbjct: 1 MEDTMQITPLGSGQEVGRSCHLLTFRGTTVLLDCGIHPGYDGMAGLPFFDRVDP--ESVD 58
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+L+++ + H +LPY + G +F T P + ++ + D ++
Sbjct: 59 VLLVTHFHLDHAASLPYFTERTGFRGRVFMTHPTKAVIRLLLGDYLRL 106
>gi|350562671|ref|ZP_08931503.1| RNA-metabolising metallo-beta-lactamase [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349778540|gb|EGZ32892.1| RNA-metabolising metallo-beta-lactamase [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 579
Score = 41.2 bits (95), Expect = 0.084, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 7 MTSLSGTMDESPPCYLLQV-DEFKILLDCGWDEMFSMDFVKELKRH-----VHHIDAVLL 60
+T G + C+ LQ+ + +L+DCG + + L++H VH + A+++
Sbjct: 6 LTHHGGAQGVTGSCHRLQLAPDRALLVDCGLFQGQDAESADNLEQHRVTFPVHDVLALIV 65
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
++ + H+G LPY++ G PI ++P ++ + + D +V +
Sbjct: 66 THVHIDHVGRLPYLLA-AGYRGPILCSVPSARLLPLVIEDALKVGF 110
>gi|392297785|gb|EIW08884.1| Ysh1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 772
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDA 57
T+ K SL G+ + C++LQ ++LD G + + S+ F E + +D
Sbjct: 6 TTTFKFFSLGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFD--LSKVDI 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDL 101
+L+S+ + H +LPY++ + +F T P + + + D
Sbjct: 64 LLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDF 107
>gi|193786492|dbj|BAG51775.1| unnamed protein product [Homo sapiens]
Length = 606
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 14 MDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDAVLLSYPDVA 66
D C L+ + ++LDCG F+ D ++ + R +D V++S+ +
Sbjct: 19 QDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLD 78
Query: 67 HLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
H GALPY G PI+ T P + + + D ++ D
Sbjct: 79 HCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 119
>gi|374633103|ref|ZP_09705470.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Metallosphaera yellowstonensis MK1]
gi|373524587|gb|EHP69464.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Metallosphaera yellowstonensis MK1]
Length = 639
Score = 41.2 bits (95), Expect = 0.089, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG-------WDEMFSMDFVKELKRHVHHIDA 57
+++T+L + L++ E ++LLD G + MF + +L+ + +DA
Sbjct: 179 VRITALGAFQEVGRSAVLVETPESRVLLDVGVNPSVNSGERMFPKLDIDQLR--LEDLDA 236
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V+L++ + H G +P++ K G P++AT P + + D+ +
Sbjct: 237 VVLTHAHLDHSGMIPFLF-KYGYEGPVYATQPTRDIMALMQLDMLDI 282
>gi|302386457|ref|YP_003822279.1| RNA-metabolising metallo-beta-lactamase [Clostridium
saccharolyticum WM1]
gi|302197085|gb|ADL04656.1| RNA-metabolising metallo-beta-lactamase [Clostridium
saccharolyticum WM1]
Length = 532
Score = 41.2 bits (95), Expect = 0.089, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+K+ + + + C+ L+ FKIL+DCG ++ +L ID VLL++
Sbjct: 1 MKLMFIGAAREVTGSCHYLEAAGFKILVDCGMEQGIDKFENVDLPVSYAEIDYVLLTHAH 60
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ H G LP++ + G + +T+ + + + D
Sbjct: 61 IDHAGMLPFIYAR-GFRGQVISTVATADLCGIMLKD 95
>gi|156082980|ref|XP_001608974.1| RNA-metabolising metallo-beta-lactamase and metallo-beta-lactamase
superfamily domain containing protein [Babesia bovis
T2Bo]
gi|154796224|gb|EDO05406.1| RNA-metabolising metallo-beta-lactamase and metallo-beta-lactamase
superfamily domain containing protein [Babesia bovis]
Length = 760
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 46 KELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
K L +ID ++S+ + H+GALP++ G P+F T P +G + + D QV
Sbjct: 112 KSLNDITSNIDCAIISHFHLDHIGALPFLTEHLGYKGPVFMTYPTRGLGPIMLRDSAQVV 171
Query: 106 YDTFLKLLLT 115
F + T
Sbjct: 172 TSRFRDAIET 181
>gi|431802334|ref|YP_007229237.1| metallo-beta-lactamase [Pseudomonas putida HB3267]
gi|430793099|gb|AGA73294.1| metallo-beta-lactamase [Pseudomonas putida HB3267]
Length = 455
Score = 41.2 bits (95), Expect = 0.090, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKE---LKRHVHHIDAVLLS 61
+++T L GT + +LL + ++L+DCG + + ++ L + +DAV+L+
Sbjct: 1 MQLTFLGGTGTVTGSKFLLTHESSRVLIDCGLFQGYKQLRLRNWEPLSAALRALDAVVLT 60
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ + H G LP ++ K G + PI+AT + ++ + D
Sbjct: 61 HAHLDHSGYLP-VLAKEGYTGPIYATPATCALAEILLLD 98
>gi|397476278|ref|XP_003809534.1| PREDICTED: integrator complex subunit 11 isoform 2 [Pan paniscus]
Length = 606
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 14 MDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDAVLLSYPDVA 66
D C L+ + ++LDCG F+ D ++ + R +D V++S+ +
Sbjct: 19 QDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLD 78
Query: 67 HLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
H GALPY G PI+ T P + + + D ++ D
Sbjct: 79 HCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 119
>gi|426327392|ref|XP_004024502.1| PREDICTED: integrator complex subunit 11 isoform 2 [Gorilla gorilla
gorilla]
Length = 606
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 14 MDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDAVLLSYPDVA 66
D C L+ + ++LDCG F+ D ++ + R +D V++S+ +
Sbjct: 19 QDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLD 78
Query: 67 HLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
H GALPY G PI+ T P + + + D ++ D
Sbjct: 79 HCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 119
>gi|354557360|ref|ZP_08976619.1| beta-lactamase domain protein [Desulfitobacterium metallireducens
DSM 15288]
gi|353550945|gb|EHC20374.1| beta-lactamase domain protein [Desulfitobacterium metallireducens
DSM 15288]
Length = 395
Score = 40.8 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKRHVH--HIDAVLLSYPDVAHLGALPYMVGKC 78
YL++ DE +L+D W + F +FV+ LK+ + ID +++ + +V H GALPY++ +
Sbjct: 38 YLIR-DEKTVLIDTVW-KPFGKEFVENLKQEIDLTKIDFIIMQHSEVDHSGALPYLMQEI 95
Query: 79 GLSCPIFATIPVYKMGQ 95
+ PI+ T K+ Q
Sbjct: 96 P-NTPIYCTASGKKIIQ 111
>gi|158256210|dbj|BAF84076.1| unnamed protein product [Homo sapiens]
Length = 606
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 14 MDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDAVLLSYPDVA 66
D C L+ + ++LDCG F+ D ++ + R +D V++S+ +
Sbjct: 19 QDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLD 78
Query: 67 HLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
H GALPY G PI+ T P + + + D ++ D
Sbjct: 79 HCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 119
>gi|374253819|ref|NP_001243385.1| integrator complex subunit 11 isoform 1 [Homo sapiens]
gi|119576642|gb|EAW56238.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_f
[Homo sapiens]
Length = 606
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 14 MDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDAVLLSYPDVA 66
D C L+ + ++LDCG F+ D ++ + R +D V++S+ +
Sbjct: 19 QDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLD 78
Query: 67 HLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
H GALPY G PI+ T P + + + D ++ D
Sbjct: 79 HCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 119
>gi|89896900|ref|YP_520387.1| metallo-beta-lactamase/flavodoxin domain-containing protein
[Desulfitobacterium hafniense Y51]
gi|89336348|dbj|BAE85943.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 396
Score = 40.8 bits (94), Expect = 0.093, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKRHV--HHIDAVLLSYPDVAHLGALPYMVGKC 78
YL++ DE +L+D W E F +F+ +LK+ + + ID +++++ +V H GALP+++ +
Sbjct: 38 YLIR-DEKTVLIDTVW-EPFGREFIAKLKQEIDLNEIDYIVMNHNEVDHSGALPFLLEEI 95
Query: 79 GLSCPIFAT 87
+ PI+ T
Sbjct: 96 P-NTPIYCT 103
>gi|355744837|gb|EHH49462.1| hypothetical protein EGM_00117, partial [Macaca fascicularis]
Length = 592
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDAVLLSY 62
+ D C L+ + ++LDCG F+ D ++ + R +D V++S+
Sbjct: 1 VGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 60
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
+ H GALPY G PI+ T P + + + D ++ D
Sbjct: 61 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 105
>gi|433546684|ref|ZP_20502992.1| ribonuclease J 1 [Brevibacillus agri BAB-2500]
gi|432182014|gb|ELK39607.1| ribonuclease J 1 [Brevibacillus agri BAB-2500]
Length = 550
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S +K+ ++ G + Y ++ ++ I++DCG +EMF +D V L + H
Sbjct: 2 SDVKIFAMGGLGEIGKNMYCVEYEDEIIMIDCGVKFPENEMFGIDLVIPDISYLVDNQHK 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFA 86
I A+LL++ H+GA+PY+ + ++ PI+
Sbjct: 62 IKALLLTHGHEDHIGAIPYIFKQ--INVPIYG 91
>gi|380798915|gb|AFE71333.1| integrator complex subunit 11 isoform 2, partial [Macaca mulatta]
Length = 588
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 14 MDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDAVLLSYPDVA 66
D C L+ + ++LDCG F+ D ++ + R +D V++S+ +
Sbjct: 1 QDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLD 60
Query: 67 HLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
H GALPY G PI+ T P + + + D ++ D
Sbjct: 61 HCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 101
>gi|451987807|ref|ZP_21935959.1| Metallo-beta-lactamase family protein,RNA-specific [Pseudomonas
aeruginosa 18A]
gi|451754566|emb|CCQ88482.1| Metallo-beta-lactamase family protein,RNA-specific [Pseudomonas
aeruginosa 18A]
Length = 467
Score = 40.8 bits (94), Expect = 0.096, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 23/107 (21%)
Query: 7 MTSLSGTMDESPPCYLLQ-VDEFKILLDCGWDEMFSMDFVKELKRHVHH----------- 54
+T L + + CYLL+ +D K+LL+CG +++ +R +
Sbjct: 4 LTFLGAAQEVTGSCYLLETLDGVKVLLECG---------MRQGRREADNGNRAPFPFDPA 54
Query: 55 -IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
IDAV++S+ + H G LP + + G PIFAT ++ ++ + D
Sbjct: 55 SIDAVVISHAHLDHSGLLPRLAAE-GFKGPIFATEATCELLELMLLD 100
>gi|15598810|ref|NP_252304.1| hypothetical protein PA3614 [Pseudomonas aeruginosa PAO1]
gi|418586151|ref|ZP_13150197.1| hypothetical protein O1O_15768 [Pseudomonas aeruginosa MPAO1/P1]
gi|418589421|ref|ZP_13153343.1| hypothetical protein O1Q_02483 [Pseudomonas aeruginosa MPAO1/P2]
gi|421518157|ref|ZP_15964831.1| hypothetical protein A161_17800 [Pseudomonas aeruginosa PAO579]
gi|9949771|gb|AAG07002.1|AE004781_10 hypothetical protein PA3614 [Pseudomonas aeruginosa PAO1]
gi|375043825|gb|EHS36441.1| hypothetical protein O1O_15768 [Pseudomonas aeruginosa MPAO1/P1]
gi|375051655|gb|EHS44121.1| hypothetical protein O1Q_02483 [Pseudomonas aeruginosa MPAO1/P2]
gi|404347639|gb|EJZ73988.1| hypothetical protein A161_17800 [Pseudomonas aeruginosa PAO579]
Length = 467
Score = 40.8 bits (94), Expect = 0.096, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 23/107 (21%)
Query: 7 MTSLSGTMDESPPCYLLQ-VDEFKILLDCGWDEMFSMDFVKELKRHVHH----------- 54
+T L + + CYLL+ +D K+LL+CG +++ +R +
Sbjct: 4 LTFLGAAQEVTGSCYLLETLDGVKVLLECG---------MRQGRREADNGNRAPFPFDPA 54
Query: 55 -IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
IDAV++S+ + H G LP + + G PIFAT ++ ++ + D
Sbjct: 55 SIDAVVISHAHLDHSGLLPRLAAE-GFKGPIFATEATCELLELMLLD 100
>gi|420138188|ref|ZP_14646128.1| hypothetical protein PACIG1_1626 [Pseudomonas aeruginosa CIG1]
gi|421158594|ref|ZP_15617841.1| hypothetical protein PABE173_1452 [Pseudomonas aeruginosa ATCC
25324]
gi|403249041|gb|EJY62557.1| hypothetical protein PACIG1_1626 [Pseudomonas aeruginosa CIG1]
gi|404549475|gb|EKA58334.1| hypothetical protein PABE173_1452 [Pseudomonas aeruginosa ATCC
25324]
Length = 467
Score = 40.8 bits (94), Expect = 0.096, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 23/107 (21%)
Query: 7 MTSLSGTMDESPPCYLLQ-VDEFKILLDCGWDEMFSMDFVKELKRHVHH----------- 54
+T L + + CYLL+ +D K+LL+CG +++ +R +
Sbjct: 4 LTFLGAAQEVTGSCYLLETLDGVKVLLECG---------MRQGRREADNGNRAPFPFDPA 54
Query: 55 -IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
IDAV++S+ + H G LP + + G PIFAT ++ ++ + D
Sbjct: 55 SIDAVVISHAHLDHSGLLPRLAAE-GFKGPIFATEATCELLELMLLD 100
>gi|355640042|ref|ZP_09051532.1| hypothetical protein HMPREF1030_00618 [Pseudomonas sp. 2_1_26]
gi|354831562|gb|EHF15574.1| hypothetical protein HMPREF1030_00618 [Pseudomonas sp. 2_1_26]
Length = 467
Score = 40.8 bits (94), Expect = 0.096, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 23/107 (21%)
Query: 7 MTSLSGTMDESPPCYLLQ-VDEFKILLDCGWDEMFSMDFVKELKRHVHH----------- 54
+T L + + CYLL+ +D K+LL+CG +++ +R +
Sbjct: 4 LTFLGAAQEVTGSCYLLETLDGVKVLLECG---------MRQGRREADNGNRAPFPFDPA 54
Query: 55 -IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
IDAV++S+ + H G LP + + G PIFAT ++ ++ + D
Sbjct: 55 SIDAVVISHAHLDHSGLLPRLAAE-GFKGPIFATEATCELLELMLLD 100
>gi|386057438|ref|YP_005973960.1| putative metallo-beta-lactamase superfamily protein [Pseudomonas
aeruginosa M18]
gi|421166154|ref|ZP_15624422.1| hypothetical protein PABE177_1243 [Pseudomonas aeruginosa ATCC
700888]
gi|421179222|ref|ZP_15636818.1| hypothetical protein PAE2_1267 [Pseudomonas aeruginosa E2]
gi|424939573|ref|ZP_18355336.1| putative metallo-beta-lactamase superfamily protein [Pseudomonas
aeruginosa NCMG1179]
gi|346056019|dbj|GAA15902.1| putative metallo-beta-lactamase superfamily protein [Pseudomonas
aeruginosa NCMG1179]
gi|347303744|gb|AEO73858.1| putative metallo-beta-lactamase superfamily protein [Pseudomonas
aeruginosa M18]
gi|404539131|gb|EKA48636.1| hypothetical protein PABE177_1243 [Pseudomonas aeruginosa ATCC
700888]
gi|404547465|gb|EKA56463.1| hypothetical protein PAE2_1267 [Pseudomonas aeruginosa E2]
Length = 467
Score = 40.8 bits (94), Expect = 0.096, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 23/107 (21%)
Query: 7 MTSLSGTMDESPPCYLLQ-VDEFKILLDCGWDEMFSMDFVKELKRHVHH----------- 54
+T L + + CYLL+ +D K+LL+CG +++ +R +
Sbjct: 4 LTFLGAAQEVTGSCYLLETLDGVKVLLECG---------MRQGRREADNGNRAPFPFDPA 54
Query: 55 -IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
IDAV++S+ + H G LP + + G PIFAT ++ ++ + D
Sbjct: 55 SIDAVVISHAHLDHSGLLPRLAAE-GFKGPIFATEATCELLELMLLD 100
>gi|116051611|ref|YP_789550.1| hypothetical protein PA14_17570 [Pseudomonas aeruginosa UCBPP-PA14]
gi|313108972|ref|ZP_07794947.1| putative metallo-beta-lactamase superfamily protein [Pseudomonas
aeruginosa 39016]
gi|386067649|ref|YP_005982953.1| hypothetical protein NCGM2_4745 [Pseudomonas aeruginosa NCGM2.S1]
gi|421173148|ref|ZP_15630902.1| hypothetical protein PACI27_1388 [Pseudomonas aeruginosa CI27]
gi|115586832|gb|ABJ12847.1| putative metallo-beta-lactamase superfamily protein [Pseudomonas
aeruginosa UCBPP-PA14]
gi|310881449|gb|EFQ40043.1| putative metallo-beta-lactamase superfamily protein [Pseudomonas
aeruginosa 39016]
gi|348036208|dbj|BAK91568.1| hypothetical protein NCGM2_4745 [Pseudomonas aeruginosa NCGM2.S1]
gi|404536449|gb|EKA46089.1| hypothetical protein PACI27_1388 [Pseudomonas aeruginosa CI27]
Length = 467
Score = 40.8 bits (94), Expect = 0.096, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 23/107 (21%)
Query: 7 MTSLSGTMDESPPCYLLQ-VDEFKILLDCGWDEMFSMDFVKELKRHVHH----------- 54
+T L + + CYLL+ +D K+LL+CG +++ +R +
Sbjct: 4 LTFLGAAQEVTGSCYLLETLDGVKVLLECG---------MRQGRREADNGNRAPFPFDPA 54
Query: 55 -IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
IDAV++S+ + H G LP + + G PIFAT ++ ++ + D
Sbjct: 55 SIDAVVISHAHLDHSGLLPRLAAE-GFKGPIFATEATCELLELMLLD 100
>gi|219667246|ref|YP_002457681.1| metallo-beta-lactamase/flavodoxin domain-containing protein
[Desulfitobacterium hafniense DCB-2]
gi|219537506|gb|ACL19245.1| beta-lactamase domain protein [Desulfitobacterium hafniense DCB-2]
Length = 396
Score = 40.8 bits (94), Expect = 0.096, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKRHV--HHIDAVLLSYPDVAHLGALPYMVGKC 78
YL++ DE +L+D W E F +F+ +LK+ + + ID +++++ +V H GALP+++ +
Sbjct: 38 YLIR-DEKTVLIDTVW-EPFGREFIAKLKQEIDLNEIDYIVMNHNEVDHSGALPFLMEEI 95
Query: 79 GLSCPIFAT 87
+ PI+ T
Sbjct: 96 P-NTPIYCT 103
>gi|218890161|ref|YP_002439025.1| putative metallo-beta-lactamase superfamily protein [Pseudomonas
aeruginosa LESB58]
gi|254236530|ref|ZP_04929853.1| hypothetical protein PACG_02527 [Pseudomonas aeruginosa C3719]
gi|254242312|ref|ZP_04935634.1| hypothetical protein PA2G_03053 [Pseudomonas aeruginosa 2192]
gi|296387882|ref|ZP_06877357.1| putative metallo-beta-lactamase superfamily protein [Pseudomonas
aeruginosa PAb1]
gi|392982662|ref|YP_006481249.1| metallo-beta-lactamase superfamily protein [Pseudomonas aeruginosa
DK2]
gi|416854713|ref|ZP_11911070.1| putative metallo-beta-lactamase superfamily protein [Pseudomonas
aeruginosa 138244]
gi|416874855|ref|ZP_11918404.1| putative metallo-beta-lactamase superfamily protein [Pseudomonas
aeruginosa 152504]
gi|419754793|ref|ZP_14281151.1| putative metallo-beta-lactamase superfamily protein [Pseudomonas
aeruginosa PADK2_CF510]
gi|421152577|ref|ZP_15612157.1| hypothetical protein PABE171_1503 [Pseudomonas aeruginosa ATCC
14886]
gi|126168461|gb|EAZ53972.1| hypothetical protein PACG_02527 [Pseudomonas aeruginosa C3719]
gi|126195690|gb|EAZ59753.1| hypothetical protein PA2G_03053 [Pseudomonas aeruginosa 2192]
gi|218770384|emb|CAW26149.1| putative metallo-beta-lactamase superfamily protein [Pseudomonas
aeruginosa LESB58]
gi|334842597|gb|EGM21201.1| putative metallo-beta-lactamase superfamily protein [Pseudomonas
aeruginosa 152504]
gi|334843696|gb|EGM22281.1| putative metallo-beta-lactamase superfamily protein [Pseudomonas
aeruginosa 138244]
gi|384398611|gb|EIE45016.1| putative metallo-beta-lactamase superfamily protein [Pseudomonas
aeruginosa PADK2_CF510]
gi|392318167|gb|AFM63547.1| putative metallo-beta-lactamase superfamily protein [Pseudomonas
aeruginosa DK2]
gi|404525337|gb|EKA35613.1| hypothetical protein PABE171_1503 [Pseudomonas aeruginosa ATCC
14886]
gi|453047379|gb|EME95093.1| metallo-beta-lactamase superfamily protein [Pseudomonas aeruginosa
PA21_ST175]
Length = 467
Score = 40.8 bits (94), Expect = 0.096, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 23/107 (21%)
Query: 7 MTSLSGTMDESPPCYLLQ-VDEFKILLDCGWDEMFSMDFVKELKRHVHH----------- 54
+T L + + CYLL+ +D K+LL+CG +++ +R +
Sbjct: 4 LTFLGAAQEVTGSCYLLETLDGVKVLLECG---------MRQGRREADNGNRAPFPFDPA 54
Query: 55 -IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
IDAV++S+ + H G LP + + G PIFAT ++ ++ + D
Sbjct: 55 SIDAVVISHAHLDHSGLLPRLAAE-GFKGPIFATEATCELLELMLLD 100
>gi|15614961|ref|NP_243264.1| hypothetical protein BH2398 [Bacillus halodurans C-125]
gi|10175018|dbj|BAB06117.1| BH2398 [Bacillus halodurans C-125]
Length = 555
Score = 40.8 bits (94), Expect = 0.097, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVH 53
T I++ +L G + Y+++VD+ ++D G DEM +D V L +
Sbjct: 6 TESIRVFALGGVGEIGKNMYVVEVDDDLFVIDAGLMFPDDEMLGVDVVIPDISYLVENEE 65
Query: 54 HIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ A+LL++ H+G LPY++ K L+ P++ T
Sbjct: 66 RVRAILLTHGHEDHIGGLPYVLQK--LNVPVYGT 97
>gi|259417676|ref|ZP_05741595.1| metallo-beta-lactamase domain protein [Silicibacter sp.
TrichCH4B]
gi|259346582|gb|EEW58396.1| metallo-beta-lactamase domain protein [Silicibacter sp.
TrichCH4B]
Length = 356
Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 7 MTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVA 66
+T LSG D+ P L + LLDCG+ + +F + + +DAV +++ +
Sbjct: 4 ITVLSGIGDKGPAAMRLDTGRHRWLLDCGFGPEANANFDPKW---LDGVDAVFVTHDHID 60
Query: 67 HLGALPYMVGKCGLSCPIFAT 87
H+G Y V + GL PI+AT
Sbjct: 61 HIGGAAYAV-EAGL--PIYAT 78
>gi|387594235|gb|EIJ89259.1| integrator complex subunit 11 [Nematocida parisii ERTm3]
gi|387594982|gb|EIJ92609.1| integrator complex subunit 11 [Nematocida parisii ERTm1]
Length = 502
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVK--ELK-----RHVHHIDA 57
+K+T L D C ++ + I+ DCG M D+ + + K + ID
Sbjct: 1 MKVTVLGAGQDIGRSCVVVTIQNRTIMFDCGM-HMGHSDYRRFPDFKLLGPGPYTGVIDC 59
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++++ + H G LPY +C S PI+ T P + + + D +V
Sbjct: 60 VIITHFHMDHCGGLPYFTERCKYSGPIYMTPPTKAVLPIILQDYCKV 106
>gi|326435554|gb|EGD81124.1| integrator complex subunit 11 [Salpingoeca sp. ATCC 50818]
Length = 620
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW------DEMFSMDFVKELKRHVHHIDAV 58
I + L D C +++++ I+ DCG D F V ID V
Sbjct: 38 IVVLPLGAGQDVGRSCIIVEMNGRTIMFDCGMHMGYNDDRRFPDFSVLADGDLTSRIDVV 97
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
++S+ + H GALP+ CG PI+ T P + + + D
Sbjct: 98 IISHFHLDHCGALPFFSEMCGYDKPIYMTYPTKAICPLLLED 139
>gi|82702786|ref|YP_412352.1| beta-lactamase-like protein [Nitrosospira multiformis ATCC 25196]
gi|82410851|gb|ABB74960.1| Beta-lactamase-like protein [Nitrosospira multiformis ATCC 25196]
Length = 453
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 21 YLLQVDEFKILLDCGWDEMFS---MDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
YLLQ + IL+DCG + + + K L I+AV+L++ + H G LP ++ K
Sbjct: 18 YLLQHEAANILIDCGLFQGYKQLRLRNWKALPFDAKKINAVVLTHAHIDHSGYLP-LLAK 76
Query: 78 CGLSCPIFATIPVYKMGQMFMYDLFQVR 105
G + P++ T + ++ + D Q++
Sbjct: 77 NGFTAPVYCTTATRDLCEILLPDSGQLQ 104
>gi|386359601|ref|YP_006057846.1| beta-lactamase fold exonuclease [Thermus thermophilus JL-18]
gi|383508628|gb|AFH38060.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermus thermophilus JL-18]
Length = 431
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHV------HHIDAVLLSYPDVAHLGALPY 73
C+LL ++LLDCG MF +E + H +DAVLL++ + H+G LP
Sbjct: 16 CHLLLAGSRRVLLDCG---MFQGK--EEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPK 70
Query: 74 MVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFL 110
+ + G P++AT + ++ + D +V + F
Sbjct: 71 LF-REGYRGPVYATRATALLMEIVLEDALKVMDEPFF 106
>gi|418966368|ref|ZP_13518109.1| hypothetical protein HMPREF1044_0608 [Streptococcus constellatus
subsp. constellatus SK53]
gi|383340189|gb|EID18501.1| hypothetical protein HMPREF1044_0608 [Streptococcus constellatus
subsp. constellatus SK53]
Length = 553
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y+ +VDE +LD G +E +DFV L +
Sbjct: 2 SNIKLIALGGVRENGKNLYIAEVDESIFILDVGLKYPENEQLGVDFVIPNMDYLFENKDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
I V L++ +GALPY++ + + P+F + ++ ++F+
Sbjct: 62 IAGVFLTHGHADAIGALPYLLAETKV--PVFGSELTIELAKLFV 103
>gi|423068344|ref|ZP_17057132.1| hypothetical protein HMPREF9682_00353 [Streptococcus intermedius
F0395]
gi|355366835|gb|EHG14549.1| hypothetical protein HMPREF9682_00353 [Streptococcus intermedius
F0395]
Length = 553
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y+ +VDE +LD G +E +DFV L +
Sbjct: 2 SNIKLIALGGVRENGKNLYIAEVDESIFILDVGLKYPENEQLGVDFVIPNMDYLFENKDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
I V L++ +GALPY++ + + P+F + ++ ++F+
Sbjct: 62 IAGVFLTHGHADAIGALPYLLAETKV--PVFGSELTIELAKLFV 103
>gi|332796323|ref|YP_004457823.1| beta-lactamase domain-containing protein [Acidianus hospitalis W1]
gi|332694058|gb|AEE93525.1| beta-lactamase domain protein [Acidianus hospitalis W1]
Length = 638
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG-------WDEMFSMDFVKELKRHVHHIDA 57
+++T+L + L++ E ++LLD G + MF + +L+ + +DA
Sbjct: 178 VRITALGAFQEIGRSAILVETPESRVLLDTGVNPSVNFGERMFPKLDIDQLR--LEDLDA 235
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++++ + H G +PY+ K G P++ T P + + DL V
Sbjct: 236 VVITHAHLDHCGMVPYLF-KYGYEGPVYTTPPTRDVMALMQLDLLDV 281
>gi|315221395|ref|ZP_07863316.1| conserved hypothetical protein [Streptococcus anginosus F0211]
gi|315189514|gb|EFU23208.1| conserved hypothetical protein [Streptococcus anginosus F0211]
Length = 553
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y+ +VDE +LD G +E +DFV L +
Sbjct: 2 SNIKLIALGGVRENGKNLYIAEVDESIFILDVGLKYPENEQLGVDFVIPNMDYLFENKDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
I V L++ +GALPY++ + + P+F + ++ ++F+
Sbjct: 62 IAGVFLTHGHADAIGALPYLLAETKV--PVFGSELTIELAKLFV 103
>gi|238917336|ref|YP_002930853.1| metallo-beta-lactamase family protein [Eubacterium eligens ATCC
27750]
gi|238872696|gb|ACR72406.1| metallo-beta-lactamase family protein [Eubacterium eligens ATCC
27750]
Length = 537
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+K+T L + + C+ LQ IL+DCG ++ + +EL +D +LL++
Sbjct: 1 MKLTFLGADHEVTGSCHFLQAAGLNILVDCGMEQGNDVYENQELPVVASDVDCILLTHAH 60
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ H G +P M G +++T ++ ++ + D
Sbjct: 61 IDHSGLIPLMYVN-GFRGQVYSTSATAQLCEIMLRD 95
>gi|328867689|gb|EGG16071.1| beta-lactamase domain-containing protein [Dictyostelium
fasciculatum]
Length = 786
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVK--ELKRHVHHIDA 57
I+++ + + C LL+ I+ DCG + + S+ F EL ++ ID
Sbjct: 26 ILQIMPIGSGSEVGRSCVLLKYKGKTIMFDCGVHPAYSGLSSLPFFDSIELYCNIDDIDL 85
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+L+S+ + H A+PY V K ++ T P K+ ++ + D +V
Sbjct: 86 LLVSHFHLDHAAAVPYFVQKTDFKGKVYMTHPTKKIYKVLLSDYVKV 132
>gi|402471873|gb|EJW05382.1| hypothetical protein EDEG_00046 [Edhazardia aedis USNM 41457]
Length = 507
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCG-------WDEMFSMDFVKELKRHVHHIDAVLLSY 62
L D C L ++ I+LDCG + + ++ + ID +++S+
Sbjct: 6 LGAGQDVGRSCILATLEGRTIMLDCGMHMGYNDYRKFPDFSYISKQLGFNRLIDCIIISH 65
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ H GALPY G PI+ T P + Q+ + D
Sbjct: 66 FHIDHCGALPYFTEVLGYDGPIYMTHPTKAICQILLED 103
>gi|399046463|ref|ZP_10738843.1| hypothetical protein PMI08_00333 [Brevibacillus sp. CF112]
gi|398055454|gb|EJL47525.1| hypothetical protein PMI08_00333 [Brevibacillus sp. CF112]
Length = 550
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S +K+ ++ G + Y ++ ++ I++DCG +EMF +D V L + H
Sbjct: 2 SDVKIFAMGGLGEIGKNMYCVEYEDEIIIIDCGVKFPENEMFGIDLVIPDISYLVDNQHK 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFA 86
I A+LL++ H+GA+PY+ + ++ PI+
Sbjct: 62 IKALLLTHGHEDHIGAIPYIFKQ--INVPIYG 91
>gi|257439905|ref|ZP_05615660.1| metallo-beta-lactamase family protein [Faecalibacterium prausnitzii
A2-165]
gi|257197633|gb|EEU95917.1| metallo-beta-lactamase domain protein [Faecalibacterium prausnitzii
A2-165]
Length = 535
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+K+T L + + C LL+ + L+DCG ++ + + ID VL+++
Sbjct: 1 MKLTFLGANHEVTGSCTLLEAAGQRYLIDCGMEQGKDVYENQPFPVAPGEIDGVLVTHAH 60
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ H G LP +V + G I+AT P ++ + + D
Sbjct: 61 IDHTGQLPLLV-RNGFRGRIYATKPTTQLCSIMLRD 95
>gi|262172629|ref|ZP_06040307.1| metallo-beta-lactamase family protein RNA-specific [Vibrio mimicus
MB-451]
gi|261893705|gb|EEY39691.1| metallo-beta-lactamase family protein RNA-specific [Vibrio mimicus
MB-451]
Length = 438
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG + +DF V+H++ ++L++ + H+G LP++
Sbjct: 16 CHELRSDGQALLIDCGLFQGADERSLEIDFA------VNHLNGLVLTHAHIDHIGRLPWL 69
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ G + PIF T ++ + + D
Sbjct: 70 LA-AGFNQPIFCTAATAELVPLMLED 94
>gi|330838791|ref|YP_004413371.1| beta-lactamase domain protein [Selenomonas sputigena ATCC 35185]
gi|329746555|gb|AEB99911.1| beta-lactamase domain protein [Selenomonas sputigena ATCC 35185]
Length = 537
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS-------MDFVKELKRHVHHIDA 57
+K+T L + CYLL+ +E K+L+DCG MF +++ KE + +D
Sbjct: 1 MKLTFLGAAHTVTGSCYLLESEERKVLVDCG---MFQGGRRIRELNY-KEFCFNPAELDC 56
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
V+L++ + H G +P + K G ++AT ++ + + D
Sbjct: 57 VILTHAHIDHCGLVPKLY-KEGFKGAVYATKVTCELAHIMLPD 98
>gi|85857919|ref|YP_460121.1| metallo-beta-lactamase protein [Syntrophus aciditrophicus SB]
gi|85721010|gb|ABC75953.1| metallo-beta-lactamase protein [Syntrophus aciditrophicus SB]
Length = 541
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFVKELKRHVHHIDAVL 59
I+K+ L + CY+L+ + +DCG +E+ ++ EL I+ L
Sbjct: 6 IMKIKFLGAARTVTGSCYILETQGHRFAIDCGMHQGNEEIEKRNWNVELYEP-EKIEFFL 64
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+++ + H G LP +V K G PI+AT P + ++ + D
Sbjct: 65 ITHAHIDHTGLLPRLVQK-GFRGPIYATQPTVDLLRILLLD 104
>gi|373957121|ref|ZP_09617081.1| RNA-metabolising metallo-beta-lactamase [Mucilaginibacter paludis
DSM 18603]
gi|373893721|gb|EHQ29618.1| RNA-metabolising metallo-beta-lactamase [Mucilaginibacter paludis
DSM 18603]
Length = 463
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD------EMFSMDFVKELKRHVHHIDAV 58
+K+T + +LL+V ++KIL+DCG D M + +F + ID V
Sbjct: 1 MKLTIHGAAQQVTGSMHLLEVGQYKILVDCGLDCERDHHVMLNENF----PFNPGEIDVV 56
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+L++ + H G LP +V + G + I T P + ++ + D
Sbjct: 57 ILTHAHIDHSGNLPTLV-RMGFNGQILCTPPTADLTEILLLD 97
>gi|71027091|ref|XP_763189.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350142|gb|EAN30906.1| hypothetical protein TP03_0171 [Theileria parva]
Length = 678
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 46 KELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
K LK + +D ++S+ + H+GALP++ G S PI+ T P + + + D QV
Sbjct: 108 KALKNVTNSVDCSVISHFHLDHVGALPFLTEHIGYSGPIYLTYPTRALCPLLLRDSVQV 166
>gi|398345287|ref|ZP_10529990.1| metallo-beta-lactamase superfamily protein [Leptospira inadai
serovar Lyme str. 10]
Length = 460
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELK--------RHVHHIDAVLLSYPDVAHLGALP 72
YLL V IL+DCG +F +KEL+ ID +LL++ + H G LP
Sbjct: 22 YLLTVFGKNILIDCG---LFQG--IKELRLRNWDVLPTEAERIDVILLTHGHLDHTGYLP 76
Query: 73 YMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+V K G S I AT P + ++ + D
Sbjct: 77 RLV-KSGFSGNILATAPTLDVAEIILKD 103
>gi|431792962|ref|YP_007219867.1| flavoprotein [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430783188|gb|AGA68471.1| putative flavoprotein [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 396
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKRHV--HHIDAVLLSYPDVAHLGALPYMVGKC 78
YL++ DE +L+D W E F +FV +LK+ + ID +++++ +V H GALP+++ +
Sbjct: 38 YLIR-DEKTVLIDTIW-EPFGREFVTKLKQEIDLKEIDYIIMNHNEVDHSGALPFLMEEI 95
Query: 79 GLSCPIFAT 87
PI+ T
Sbjct: 96 P-DTPIYCT 103
>gi|378951018|ref|YP_005208506.1| metallo-beta-lactamase family protein, RNA-specific [Pseudomonas
fluorescens F113]
gi|359761032|gb|AEV63111.1| Metallo-beta-lactamase family protein, RNA-specific [Pseudomonas
fluorescens F113]
Length = 451
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH--------VHHID 56
+ MT L + YLL+ D+ +IL+DCG + + K+L+ H + +D
Sbjct: 1 MHMTFLGAAGTVTGSKYLLEHDDQRILIDCGLFQGY-----KQLRLHNWDPFELPMRDLD 55
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
A++L++ + H G LP +V + G PI+A+ ++ ++ + D
Sbjct: 56 AIVLTHAHLDHSGYLPVLV-RNGYRGPIYASPATCELVKILLRD 98
>gi|335436298|ref|ZP_08559097.1| metal-dependent RNase [Halorhabdus tiamatea SARL4B]
gi|335438977|ref|ZP_08561703.1| metal-dependent RNase [Halorhabdus tiamatea SARL4B]
gi|334889315|gb|EGM27602.1| metal-dependent RNase [Halorhabdus tiamatea SARL4B]
gi|334897911|gb|EGM36036.1| metal-dependent RNase [Halorhabdus tiamatea SARL4B]
Length = 523
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSY 62
S ++T G + CY +Q + L+DCG + + +F IDAV +++
Sbjct: 2 SEFEITPRGGVEEVGRSCYQVQAGDRDYLVDCGLKQSHTAEFPTFRGLEPGQIDAVFITH 61
Query: 63 PDVAHLGALPYMVGKCGL---SCPIFATIPVYKMGQMFMYDLFQV 104
+ H+G LP + + GL I T P + + ++D Q+
Sbjct: 62 AHIDHIGGLP-VAEQRGLFADDASIIMTRPTNALATILLHDSLQI 105
>gi|19881000|gb|AAM00627.1| unknown [Legionella pneumophila]
Length = 470
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH--------VHHID 56
+K+T L T + YLL + KIL+DCG + + KEL+ H ID
Sbjct: 18 MKLTFLGATETVTGSKYLLTIGSKKILIDCGLFQGY-----KELRLRNWAPLPIDPHDID 72
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
AV++++ + H G LP +V K G I+ T
Sbjct: 73 AVIITHAHIDHSGYLPLLV-KNGFQGKIYTT 102
>gi|407277334|ref|ZP_11105804.1| beta-lactamase-like protein [Rhodococcus sp. P14]
Length = 534
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 20 CYLLQVDEFKILLDCGW-------DEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALP 72
C + +D +IL+DCG +E+ DF IDAV+L++ + H G LP
Sbjct: 20 CTEIALDSTRILVDCGLFQGSRTLEELNYGDFAFA----PDEIDAVVLTHAHIDHCGLLP 75
Query: 73 YMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+V + G PIF T P + + + D
Sbjct: 76 KLVAQ-GFEGPIFCTGPTTDLLEFMLAD 102
>gi|330446617|ref|ZP_08310269.1| metallo-beta-lactamase superfamily protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328490808|dbj|GAA04766.1| metallo-beta-lactamase superfamily protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 458
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 8/72 (11%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKE----LKRHVHHIDAVLLSYPDVAHLGALPYMV 75
C+ L + + +L+DCG +F K ++ + HI+A+L+++ + H+G +P+++
Sbjct: 16 CHELMIGKSSLLIDCG---LFQGAEAKHQQLNIEFDIKHIEALLVTHSHIDHIGRIPWLL 72
Query: 76 GKCGLSCPIFAT 87
G S PI+AT
Sbjct: 73 A-AGFSGPIYAT 83
>gi|410029643|ref|ZP_11279473.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Marinilabilia sp. AK2]
Length = 466
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDE---MFSMDFVKELKRHVHHIDAVLLS 61
+K+ L G + YL+++D K L+DCG + + + + ID V+L+
Sbjct: 3 VKVKFLGGAKTVTGSRYLIEMDHSKFLVDCGLFQGLKEYRLRNWESFPIKPSEIDFVILT 62
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ + H G LP +V K G S I+ T P ++ ++ + D
Sbjct: 63 HAHIDHSGYLPKLV-KEGFSGKIYCTFPTEELVRILLLD 100
>gi|345563625|gb|EGX46611.1| hypothetical protein AOL_s00097g515 [Arthrobotrys oligospora ATCC
24927]
Length = 791
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDA 57
+ ++ L G + C+++Q ++LD G +D + S+ F + + +D
Sbjct: 18 SDMLSFICLGGGSEVGRSCHIVQYKGKTVMLDAGVHPAYDGISSLPFYDDFD--LSTVDI 75
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDT 108
+L+S+ + H G+LPY++ K +F T P + + M D +V T
Sbjct: 76 LLISHFHLDHAGSLPYVLTKTNFRGRVFMTHPTKAIYKWLMSDSVRVSNTT 126
>gi|452957917|gb|EME63274.1| beta-lactamase-like protein [Rhodococcus ruber BKS 20-38]
Length = 534
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 20 CYLLQVDEFKILLDCGW-------DEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALP 72
C + +D +IL+DCG +E+ DF IDAV+L++ + H G LP
Sbjct: 20 CTEIALDSTRILVDCGLFQGSRSLEELNYGDFAFT----PDEIDAVVLTHAHIDHCGLLP 75
Query: 73 YMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+V + G PIF T P + + + D
Sbjct: 76 KLVAQ-GFDGPIFCTGPTTDLLEFMLAD 102
>gi|421489901|ref|ZP_15937276.1| hypothetical protein HMPREF1126_0121 [Streptococcus anginosus
SK1138]
gi|400373914|gb|EJP26838.1| hypothetical protein HMPREF1126_0121 [Streptococcus anginosus
SK1138]
Length = 553
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y+ +VDE +LD G +E +DFV L +
Sbjct: 2 SNIKLIALGGVRENGKNLYIAEVDESIFVLDVGLKYPENEQLGVDFVIPNMDYLFENKDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
I V L++ +GALPY++ + + P+F + ++ ++F+
Sbjct: 62 IAGVFLTHGHADAIGALPYLLAETKV--PVFGSELTIELAKLFV 103
>gi|418962915|ref|ZP_13514764.1| hypothetical protein HMPREF1043_1237 [Streptococcus anginosus
subsp. whileyi CCUG 39159]
gi|383344891|gb|EID23041.1| hypothetical protein HMPREF1043_1237 [Streptococcus anginosus
subsp. whileyi CCUG 39159]
Length = 553
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y+ +VDE +LD G +E +DFV L +
Sbjct: 2 SNIKLIALGGVRENGKNLYIAEVDESIFVLDVGLKYPENEQLGVDFVIPNMDYLFENKDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
I V L++ +GALPY++ + + P+F + ++ ++F+
Sbjct: 62 IAGVFLTHGHADAIGALPYLLAETKV--PVFGSELTIELAKLFV 103
>gi|379727317|ref|YP_005319502.1| Zn-dependent hydrolase [Melissococcus plutonius DAT561]
gi|376318220|dbj|BAL62007.1| Zn-dependent hydrolase [Melissococcus plutonius DAT561]
Length = 561
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
IK+ L G + Y+ +V E +LDCG +++ +D V L+ + I
Sbjct: 4 IKIIPLGGVRENGKNMYITEVGEEIFVLDCGLKYPENDLLGIDIVIPDFTYLEENRDRIA 63
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
V L++ +GALPY++ K L P+F T
Sbjct: 64 GVFLTHGHADAIGALPYLLSK--LKIPVFGT 92
>gi|335032319|ref|ZP_08525718.1| ribonuclease J 2 [Streptococcus anginosus SK52 = DSM 20563]
gi|333767234|gb|EGL44489.1| ribonuclease J 2 [Streptococcus anginosus SK52 = DSM 20563]
Length = 553
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y+ +VDE +LD G +E +DFV L +
Sbjct: 2 SNIKLIALGGVRENGKNLYIAEVDESIFVLDVGLKYPENEQLGVDFVIPNMDYLFENKDR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
I V L++ +GALPY++ + + P+F + ++ ++F+
Sbjct: 62 IAGVFLTHGHADAIGALPYLLAETKV--PVFGSELTIELAKLFV 103
>gi|332686677|ref|YP_004456451.1| Zn-dependent hydrolase [Melissococcus plutonius ATCC 35311]
gi|332370686|dbj|BAK21642.1| Zn-dependent hydrolase, RNA-metabolising, CPSF 100 kDa analog
[Melissococcus plutonius ATCC 35311]
Length = 561
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
IK+ L G + Y+ +V E +LDCG +++ +D V L+ + I
Sbjct: 4 IKIIPLGGVRENGKNMYITEVGEEIFVLDCGLKYPENDLLGIDIVIPDFTYLEENRDRIA 63
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
V L++ +GALPY++ K L P+F T
Sbjct: 64 GVFLTHGHADAIGALPYLLSK--LKIPVFGT 92
>gi|397904376|ref|ZP_10505292.1| Metallo-beta-lactamase family protein, RNA-specific [Caloramator
australicus RC3]
gi|397162596|emb|CCJ32626.1| Metallo-beta-lactamase family protein,RNA-specific [Caloramator
australicus RC3]
Length = 464
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCG-WDEMFSMDFVKELKRHVHHIDAVLLSY 62
+IK+ + CYL++ E K L+DCG + S + ID V+L++
Sbjct: 1 MIKIKFCGAAKSVTGSCYLIETSERKFLVDCGLFQGKESKTNQSNFPFNPEEIDFVILTH 60
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ H G LP +V K G IF T + ++ + D
Sbjct: 61 AHIDHSGRLPLLVKK-GFKGSIFCTSATQDLAKIMLVD 97
>gi|196007172|ref|XP_002113452.1| hypothetical protein TRIADDRAFT_57642 [Trichoplax adhaerens]
gi|190583856|gb|EDV23926.1| hypothetical protein TRIADDRAFT_57642 [Trichoplax adhaerens]
Length = 596
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
IK+ L D C L+ + I+ DCG ++ D ++ +D
Sbjct: 4 IKVVPLGAGQDVGRSCILVTIGCKNIMFDCGMHMGYNDDRRFPDFTYITRSGSLTQFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY C PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMCKYDGPIYMTHPTKAICPILLEDYRKITVD 113
>gi|163744208|ref|ZP_02151568.1| metallo-beta-lactamase family protein [Oceanibulbus indolifex
HEL-45]
gi|161381026|gb|EDQ05435.1| metallo-beta-lactamase family protein [Oceanibulbus indolifex
HEL-45]
Length = 464
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-------DEMFSMDFVKELKRHVHHIDA 57
+K++ + + C+LLQ +IL+DCG DE + F E ID
Sbjct: 1 MKLSFHGAAQNVTGSCHLLQCAGLRILIDCGMFQGRQHTDEENAGAFGFEPS----EIDV 56
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
+LL++ + H G +P +V K G I T P + ++ M D +++
Sbjct: 57 LLLTHAHLDHCGRIPLLV-KRGFKGEIICTAPTRDLAELIMMDSAKIQ 103
>gi|156089433|ref|XP_001612123.1| hypothetical protein [Babesia bovis T2Bo]
gi|154799377|gb|EDO08555.1| hypothetical protein BBOV_III009990 [Babesia bovis]
Length = 943
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 30 ILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM-----VGKCGLSCP- 83
IL++CGW F + + LK+ +D ++L+ D H+GALP + V + GL P
Sbjct: 97 ILVNCGWSLDFEPESIDLLKQCCSDVDVIILTDGDFGHVGALPVIYSWLHVVRDGLGLPS 156
Query: 84 IFATIPVYKMGQMFMYDLF 102
I T YK + + D+
Sbjct: 157 ILCTEGCYKFARACLVDVL 175
>gi|432090010|gb|ELK23618.1| Integrator complex subunit 11 [Myotis davidii]
Length = 561
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 14 MDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDAVLLSYPDVA 66
D C L+ + ++LDCG F+ D ++ R +D V++S+ +
Sbjct: 47 QDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISHFHLD 106
Query: 67 HLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
H GALPY G PI+ T P + + + D ++ D
Sbjct: 107 HCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 147
>gi|409386641|ref|ZP_11239014.1| Zn-dependent hydrolase, RNA-metabolising, CPSF 100 kDa analog
[Lactococcus raffinolactis 4877]
gi|399206158|emb|CCK19929.1| Zn-dependent hydrolase, RNA-metabolising, CPSF 100 kDa analog
[Lactococcus raffinolactis 4877]
Length = 570
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD----EMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y+++VD+ +LD G EM +DFV L +
Sbjct: 2 SKIKIAALGGVREFGKNMYVVEVDDVIFVLDAGLKYPETEMLGVDFVIPDLSYLVENADR 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFA---TIPVYKMG 94
+ V +++ +GALPY+V + + P+F TI + K+G
Sbjct: 62 VAGVFVTHGHPDSIGALPYLVSE--VPVPVFGSQLTIELAKIG 102
>gi|365901468|ref|ZP_09439308.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3843]
gi|365417809|emb|CCE11850.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3843]
Length = 530
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKR-----HVHHIDAVLLSYPDVAHLGALPYM 74
CYL++ D +L+DCG + +KEL H IDAVLL++ + H G LP +
Sbjct: 18 CYLVRTDAGHLLIDCGLFQ--GQKTLKELNYGAFPFHPSDIDAVLLTHAHIDHSGLLPKL 75
Query: 75 VGKCGLSCPIFAT 87
V K G I AT
Sbjct: 76 V-KEGFRGRILAT 87
>gi|392949124|ref|ZP_10314719.1| metallo-beta-lactamase superfamily protein [Lactobacillus pentosus
KCA1]
gi|392435713|gb|EIW13642.1| metallo-beta-lactamase superfamily protein [Lactobacillus pentosus
KCA1]
Length = 574
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHV 52
M+S I++T G + Y ++VD +LDCG +E+ +D V L+ +
Sbjct: 1 MSSKIQITPFGGVRENGKNMYAVEVDGDIYILDCGLKYPENELLGIDIVIPDFSYLRENA 60
Query: 53 HHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
I V L++ +GALPY + + + P+F + ++ ++ M
Sbjct: 61 DRIVGVFLTHGHADAIGALPYFLNE--FNVPVFGSELTIELAKIQM 104
>gi|372209359|ref|ZP_09497161.1| lipoate-protein ligase B [Flavobacteriaceae bacterium S85]
Length = 254
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 22 LLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLS 81
L+Q + F +L+DCG D + M L +V HIDA+L ++ H+ L + C
Sbjct: 39 LIQWNNFSVLVDCGGDFRYQM-----LANNVQHIDAILFTHEHSDHIAGLDDIRPFCYKI 93
Query: 82 CPIFATIPVYKMGQMFMYDLFQVRYDTFLKL 112
P +P+Y M ++ D+ RY ++
Sbjct: 94 GP----MPIYGMKRVI--DVLSERYQYIFEI 118
>gi|372488298|ref|YP_005027863.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Dechlorosoma suillum PS]
gi|359354851|gb|AEV26022.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Dechlorosoma suillum PS]
Length = 474
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 9 SLSGTMDE-SPPCYLLQVDEFKILLDCGWDEMFSMDFVKE---LKRHVHHIDAVLLSYPD 64
S+ G E + C L++++ + L+DCG + + K L V H+D VLL++
Sbjct: 10 SMHGAAGEVTGSCTLVEMEGLRFLVDCGMFQGGGDAYGKNQRALAFDVRHLDFVLLTHAH 69
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ H G LP + G PI+AT + Q+ + D
Sbjct: 70 IDHSGLLPRL-AMLGYRGPIYATAATTDLLQVLLLD 104
>gi|16263064|ref|NP_435857.1| Metallo-beta-lactamase superfamily protein [Sinorhizobium
meliloti 1021]
gi|14523721|gb|AAK65269.1| Metallo-beta-lactamase superfamily protein [Sinorhizobium
meliloti 1021]
Length = 531
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 14/90 (15%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-------DEMFSMDFVKELKRHVHHIDA 57
I+ +GT+ S C L++ KIL+DCG E+ DF + K IDA
Sbjct: 7 IRFDGAAGTVTGS--CQLVEFGATKILVDCGLFQGSKTEKELNYRDFPFDPKT----IDA 60
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
V+L++ + H G LP + + G PIFAT
Sbjct: 61 VILTHAHIDHSGLLPKL-ARLGYDGPIFAT 89
>gi|70949293|ref|XP_744071.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56523865|emb|CAH82128.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 670
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 30 ILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALP 72
IL++CGWD+ F +D +K + + ++D VL++ + ++G LP
Sbjct: 98 ILINCGWDDNFCLDDIKNVIKVCEYVDLVLITNHGLNYIGCLP 140
>gi|449145379|ref|ZP_21776185.1| metallo-beta-lactamase family protein RNA-specific [Vibrio mimicus
CAIM 602]
gi|449078918|gb|EMB49846.1| metallo-beta-lactamase family protein RNA-specific [Vibrio mimicus
CAIM 602]
Length = 438
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +DF V+H++ ++L++ + H+G LP++
Sbjct: 16 CHELRSDGQALLIDCGLFQGADERPLEIDFA------VNHLNGLVLTHAHIDHIGRLPWL 69
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ G + PIF T ++ + + D
Sbjct: 70 LA-AGFNQPIFCTAATAELVPLMLED 94
>gi|119719226|ref|YP_919721.1| beta-lactamase domain-containing protein [Thermofilum pendens Hrk
5]
gi|119524346|gb|ABL77718.1| beta-lactamase domain protein [Thermofilum pendens Hrk 5]
Length = 639
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW------DEMFSMDFVKELKRHVHHIDAV 58
+++ SL + L+Q E ILLD G DE+ D + + +DAV
Sbjct: 180 VRIVSLGAFHEVGRSAVLVQTPEANILLDAGLKPTGNGDELPLFDLPE---FDLESLDAV 236
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++++ + H+GALP + K G P++ T P + ++ D +V
Sbjct: 237 VITHAHLDHVGALPVLF-KYGYKGPVYMTEPTLHLSKLLFEDYIKV 281
>gi|374336376|ref|YP_005093063.1| beta-lactamase domain-containing protein [Oceanimonas sp. GK1]
gi|372986063|gb|AEY02313.1| beta-lactamase domain-containing protein [Oceanimonas sp. GK1]
Length = 455
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79
C+ L+ + IL+DCG + + + HI A+++++ + H+G LPY++G G
Sbjct: 20 CHELRAGDAGILIDCGLFQGLEGKRDLAIDFDIAHIKALVVTHVHIDHVGRLPYLLG-AG 78
Query: 80 LSCPIFATIP 89
PI+ + P
Sbjct: 79 FDGPIYCSQP 88
>gi|334882270|emb|CCB83258.1| putative metallo-beta-lactamase superfamily protein
[Lactobacillus pentosus MP-10]
gi|339639095|emb|CCC18314.1| metallo-beta-lactamase superfamily protein (Putat ive)
[Lactobacillus pentosus IG1]
Length = 574
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHV 52
M+S I++T G + Y ++VD +LDCG +E+ +D V L+ +
Sbjct: 1 MSSKIQITPFGGVRENGKNMYAVEVDGDIYILDCGLKYPENELLGIDIVIPDFSYLRENA 60
Query: 53 HHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY + + + P+F +
Sbjct: 61 DRIVGVFLTHGHADAIGALPYFLNE--FNVPVFGS 93
>gi|17544920|ref|NP_518322.1| hypothetical protein RSc0201 [Ralstonia solanacearum GMI1000]
gi|17427210|emb|CAD13729.1| putative beta-lactamase-like;rna-metabolising
metallo-beta-lactamase; protein [Ralstonia solanacearum
GMI1000]
Length = 452
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKE---LKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
Y+L+ ++++DCG + + ++ L + HHIDAV+L++ + H G LP +V +
Sbjct: 17 YVLETGARRVMVDCGLFQGYKSLRLRNWDTLAVNPHHIDAVVLTHAHIDHSGYLPLLV-R 75
Query: 78 CGLSCPIFATIPVYKMGQMFMYD 100
G P++ T ++ + + D
Sbjct: 76 NGFRGPVYCTKGTAELCNILLPD 98
>gi|149180045|ref|ZP_01858550.1| Zn-dependent hydrolase [Bacillus sp. SG-1]
gi|148852237|gb|EDL66382.1| Zn-dependent hydrolase [Bacillus sp. SG-1]
Length = 556
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 10/94 (10%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDF----VKELKRHVH 53
+S++ + +L G + Y+LQ E +++DCG + + +D + L+ +
Sbjct: 5 SSLLSIFALGGCNEIGKNMYVLQYGEDIVIIDCGGKFPDETLMGIDLIIPDISYLEENAD 64
Query: 54 HIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ A+L+++ H+G +PY++ K L+ P++AT
Sbjct: 65 KVKALLITHGHEDHIGGVPYLLKK--LNVPVYAT 96
>gi|73748823|ref|YP_308062.1| metallo-beta-lactamase [Dehalococcoides sp. CBDB1]
gi|73660539|emb|CAI83146.1| metallo-beta-lactamase family protein [Dehalococcoides sp. CBDB1]
Length = 468
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 23/113 (20%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHH---------- 54
IK+ L + + YLLQ D ++L+DCG + +RH+ +
Sbjct: 3 IKIQFLGAAQNVTGSRYLLQTDHTRLLVDCGLYQ----------ERHLQNRNWQPFDVPP 52
Query: 55 --IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
++AVL+S+ + H G LP +V K G + P++ T ++ ++ + D +++
Sbjct: 53 ESLNAVLVSHAHIDHCGLLPKLV-KDGYNGPVYLTAATAEIARISLADAGKIQ 104
>gi|401837471|gb|EJT41396.1| YSH1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 779
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDAV 58
+ K SL G+ + C++LQ ++LD G + + S+ F + + ID +
Sbjct: 7 TTFKFLSLGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDDFD--LSKIDIL 64
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
L+S+ + H +LPY++ + +F T P + + + D +V
Sbjct: 65 LISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRV 110
>gi|350562146|ref|ZP_08930982.1| RNA-metabolising metallo-beta-lactamase [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349780085|gb|EGZ34424.1| RNA-metabolising metallo-beta-lactamase [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 460
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKR------HVHHIDAV 58
+K+ S G + +LL+ ++L+DCG MF + L+ IDAV
Sbjct: 1 MKLASFGGAAGVTGSKHLLESAGQRLLVDCG---MFQGEKAGRLRNWEPPPFDPRTIDAV 57
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
LL++ + H G LP +V + G P++ T P ++ ++ + D
Sbjct: 58 LLTHGHLDHCGYLPRLV-RAGFRGPVYTTRPGREVARVILMD 98
>gi|289432844|ref|YP_003462717.1| RNA-metabolising metallo-beta-lactamase [Dehalococcoides sp. GT]
gi|288946564|gb|ADC74261.1| RNA-metabolising metallo-beta-lactamase [Dehalococcoides sp. GT]
Length = 468
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 23/113 (20%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHH---------- 54
IK+ L + + YLLQ D ++L+DCG + +RH+ +
Sbjct: 3 IKIQFLGAAQNVTGSRYLLQTDHTRLLVDCGLYQ----------ERHLQNRNWQPFDVPP 52
Query: 55 --IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
++AVL+S+ + H G LP +V K G + P++ T ++ ++ + D +++
Sbjct: 53 ESLNAVLVSHAHIDHCGLLPKLV-KDGYNGPVYLTAATAEIARISLADAGKIQ 104
>gi|138894798|ref|YP_001125251.1| Zn-dependent hydrolase [Geobacillus thermodenitrificans NG80-2]
gi|196247577|ref|ZP_03146279.1| beta-lactamase domain protein [Geobacillus sp. G11MC16]
gi|134266311|gb|ABO66506.1| Zn-dependent hydrolase [Geobacillus thermodenitrificans NG80-2]
gi|196212361|gb|EDY07118.1| beta-lactamase domain protein [Geobacillus sp. G11MC16]
Length = 556
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
I++ +L G + Y++++DE +LD G DEM +D V L H I
Sbjct: 11 IRIFALGGVGEIGKNMYVVELDEDIFVLDAGVMYPEDEMLGIDKVIPDITYLIERQHRIQ 70
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
A+ L++ H+GA+ Y++ + LS P++ T
Sbjct: 71 AIFLTHGHEEHMGAIAYVLKQ--LSAPVYGT 99
>gi|54298302|ref|YP_124671.1| hypothetical protein lpp2360 [Legionella pneumophila str. Paris]
gi|53752087|emb|CAH13513.1| hypothetical protein lpp2360 [Legionella pneumophila str. Paris]
Length = 470
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH--------VHHID 56
+K+T L T + YLL + KIL+DCG + + KEL+ H ID
Sbjct: 18 MKLTFLGATETVTGSKYLLTIGSKKILIDCGLFQGY-----KELRLRNWAPLPIDPHDID 72
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
AV++++ + H G LP +V K G I+ T
Sbjct: 73 AVIITHAHIDHSGYLPLLV-KNGFQGKIYTT 102
>gi|281348165|gb|EFB23749.1| hypothetical protein PANDA_020173 [Ailuropoda melanoleuca]
Length = 591
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 14 MDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDAVLLSYPDVA 66
D C L+ + ++LDCG F+ D ++ R +D V++S+ +
Sbjct: 4 QDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISHFHLD 63
Query: 67 HLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 HCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 104
>gi|409097886|ref|ZP_11217910.1| beta-lactamase domain-containing protein [Pedobacter agri PB92]
Length = 460
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHH--------ID 56
+K+T + +LL+V +KIL+DCG +D+ KE + + I+
Sbjct: 1 MKLTFWGAAQQVTGSMHLLEVGHYKILIDCG------LDYEKETYQEENQQFPFDPADIN 54
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
V+L++ + H G LP +V + G + T P + + ++D
Sbjct: 55 LVILTHAHIDHSGNLPTLV-RLGFDGQVLCTAPTADLTSILLFD 97
>gi|323486962|ref|ZP_08092277.1| hypothetical protein HMPREF9474_04028 [Clostridium symbiosum
WAL-14163]
gi|323692009|ref|ZP_08106257.1| metallo-beta-lactamase [Clostridium symbiosum WAL-14673]
gi|355628078|ref|ZP_09049593.1| hypothetical protein HMPREF1020_03672 [Clostridium sp. 7_3_54FAA]
gi|323399734|gb|EGA92117.1| hypothetical protein HMPREF9474_04028 [Clostridium symbiosum
WAL-14163]
gi|323503932|gb|EGB19746.1| metallo-beta-lactamase [Clostridium symbiosum WAL-14673]
gi|354819971|gb|EHF04403.1| hypothetical protein HMPREF1020_03672 [Clostridium sp. 7_3_54FAA]
Length = 533
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+++T + + + C+LLQ IL+DCG ++ + EL +D VL+++
Sbjct: 1 MRLTFIGADHEVTGSCHLLQACGLNILVDCGMEQGINKFENAELPISYSDVDYVLVTHSH 60
Query: 65 VAHLGALPYMVGK 77
+ H+G LP++ +
Sbjct: 61 IDHVGMLPFIYAR 73
>gi|254581424|ref|XP_002496697.1| ZYRO0D06028p [Zygosaccharomyces rouxii]
gi|238939589|emb|CAR27764.1| ZYRO0D06028p [Zygosaccharomyces rouxii]
Length = 835
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 19/102 (18%)
Query: 22 LLQVDEFKILLDCGW--DEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGA--------L 71
+++ D IL+D GW ++ D VK + ++ +LLS V LGA L
Sbjct: 19 IVRFDNVTILIDPGWFSSKVSYEDSVKYWSNLIPEVNIILLSQSSVDCLGAYTMLYHNFL 78
Query: 72 PYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR-----YDT 108
P+ + + ++AT+PV +G++ +DL+ R YDT
Sbjct: 79 PHFISRI----QVYATLPVTNLGRVSTFDLYASRGLVGPYDT 116
>gi|436838463|ref|YP_007323679.1| beta-lactamase domain protein [Fibrella aestuarina BUZ 2]
gi|384069876|emb|CCH03086.1| beta-lactamase domain protein [Fibrella aestuarina BUZ 2]
Length = 469
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 28 FKILLDCGWDEMFSMDFVKELKRHVH----HIDAVLLSYPDVAHLGALPYMVGKCGLSCP 83
+KILLDCG + + D EL + H +DA++LS+ + H G +P +V + G
Sbjct: 25 YKILLDCGLFQGINTD---ELNQEFHFDPGEVDALILSHAHIDHTGLVPRLV-RQGFKGS 80
Query: 84 IFATIPVYKMGQMFMYD 100
I+AT + Q+ + D
Sbjct: 81 IYATPATIDLCQIMLRD 97
>gi|359791646|ref|ZP_09294491.1| hypothetical protein MAXJ12_19343 [Mesorhizobium alhagi CCNWXJ12-2]
gi|359252291|gb|EHK55557.1| hypothetical protein MAXJ12_19343 [Mesorhizobium alhagi CCNWXJ12-2]
Length = 530
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 18/109 (16%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHH------ 54
M +++K +G + S CY ++ +IL+DCG +F + +R +++
Sbjct: 1 MKTLLKFHGAAGGVTGS--CYEIETARGRILIDCG---LFQG---SKSERELNYGAFPFD 52
Query: 55 ---IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
IDAV+L++ + H G LP +V K G S PI ++P + + + D
Sbjct: 53 PAGIDAVVLTHAHIDHGGLLPKLV-KQGFSGPIHTSVPTIDLCSVMLPD 100
>gi|344995951|ref|YP_004798294.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
lactoaceticus 6A]
gi|343964170|gb|AEM73317.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
lactoaceticus 6A]
Length = 540
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH------VHHIDAV 58
+K+T + G + CYL +++ KIL+DCG MF +EL + + I+ V
Sbjct: 1 MKITFIGGAQSVTGSCYLFELEGKKILVDCG---MFQGGLTEELLNYESFPFNLSEIEFV 57
Query: 59 LLSYPDVAHLGALP 72
+LS+ + H G +P
Sbjct: 58 ILSHAHIDHSGRIP 71
>gi|161529235|ref|YP_001583061.1| beta-lactamase domain-containing protein [Nitrosopumilus maritimus
SCM1]
gi|160340536|gb|ABX13623.1| beta-lactamase domain protein [Nitrosopumilus maritimus SCM1]
Length = 646
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD-----EMFSMDFVKELKRHVHHIDAVL 59
+ + +L G LL E KIL+DCG + M + + L + +DAV+
Sbjct: 189 VSLYTLGGFGQVGRSSLLLSTPESKILIDCGINPGARSPMDAFPRLDSLNLTLDDLDAVV 248
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ + + H G LP + K G PI+ T P M + D +V
Sbjct: 249 IGHAHLDHTGFLPTLC-KYGYKGPIYCTEPTLPMMNLIQLDAIKV 292
>gi|448340516|ref|ZP_21529487.1| KH-domain/beta-lactamase-domain protein [Natrinema gari JCM 14663]
gi|445629949|gb|ELY83219.1| KH-domain/beta-lactamase-domain protein [Natrinema gari JCM 14663]
Length = 644
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFSMDFVKELKRHVHHIDAVL 59
+++T+L + ++L E +IL+DCG DE+ + + L IDAV+
Sbjct: 182 VRITTLGCCREVGRASFILSTPETRILIDCGDKPGAEDEVPYLHAPEALGAGPQTIDAVV 241
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
L++ + H +P + K G PI+ T P M + D V
Sbjct: 242 LTHAHLDHSALIPLLF-KYGYDGPIYCTEPTRDMMGLLTLDYLDV 285
>gi|448337182|ref|ZP_21526264.1| KH-domain/beta-lactamase-domain protein [Natrinema pallidum DSM
3751]
gi|445626528|gb|ELY79871.1| KH-domain/beta-lactamase-domain protein [Natrinema pallidum DSM
3751]
Length = 644
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFSMDFVKELKRHVHHIDAVL 59
+++T+L + ++L E +IL+DCG DE+ + + L IDAV+
Sbjct: 182 VRITTLGCCREVGRASFILSTPETRILIDCGDKPGAEDEVPYLHAPEALGAGPQTIDAVV 241
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
L++ + H +P + K G PI+ T P M + D V
Sbjct: 242 LTHAHLDHSALIPLLF-KYGYDGPIYCTEPTRDMMGLLTLDYLDV 285
>gi|397772828|ref|YP_006540374.1| KH-domain/beta-lactamase-domain protein [Natrinema sp. J7-2]
gi|397681921|gb|AFO56298.1| KH-domain/beta-lactamase-domain protein [Natrinema sp. J7-2]
Length = 720
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFSMDFVKELKRHVHHIDAVL 59
+++T+L + ++L E +IL+DCG DE+ + + L IDAV+
Sbjct: 258 VRITTLGCCREVGRASFILSTPETRILIDCGDKPGAEDEVPYLHAPEALGAGPQTIDAVV 317
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
L++ + H +P + K G PI+ T P M + D V
Sbjct: 318 LTHAHLDHSALIPLLF-KYGYDGPIYCTEPTRDMMGLLTLDYLDV 361
>gi|373857347|ref|ZP_09600089.1| RNA-metabolising metallo-beta-lactamase [Bacillus sp. 1NLA3E]
gi|372452997|gb|EHP26466.1| RNA-metabolising metallo-beta-lactamase [Bacillus sp. 1NLA3E]
Length = 562
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
IK+ +L G + YL+++DE ++D G +EM +D V L+ + I
Sbjct: 9 IKLIALGGVGELGKNMYLVEIDEDIFIVDAGLMFPENEMLGIDIVIPEITYLQANKERIK 68
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
AVLL++ H+GAL Y++ + P++ T
Sbjct: 69 AVLLTHGHEDHIGALSYVLKS--IDVPVYGT 97
>gi|309782661|ref|ZP_07677382.1| metallo-beta-lactamase family protein [Ralstonia sp. 5_7_47FAA]
gi|404397356|ref|ZP_10989147.1| hypothetical protein HMPREF0989_02869 [Ralstonia sp. 5_2_56FAA]
gi|308918439|gb|EFP64115.1| metallo-beta-lactamase family protein [Ralstonia sp. 5_7_47FAA]
gi|348614037|gb|EGY63600.1| hypothetical protein HMPREF0989_02869 [Ralstonia sp. 5_2_56FAA]
Length = 454
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVK---ELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
Y+L+ ++++DCG + + ++ +L + HHIDAV+L++ + H G LP +V +
Sbjct: 17 YVLETGGRRVMVDCGLFQGYKSLRLRNWDKLAVNPHHIDAVVLTHAHIDHSGYLPLLV-R 75
Query: 78 CGLSCPIFATIPVYKMGQMFMYD 100
G P++ T ++ + + D
Sbjct: 76 NGFHGPVYCTKGTAELCNILLPD 98
>gi|315282324|ref|ZP_07870757.1| ribonuclease J 2 [Listeria marthii FSL S4-120]
gi|313614029|gb|EFR87740.1| ribonuclease J 2 [Listeria marthii FSL S4-120]
Length = 555
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 11/107 (10%)
Query: 12 GTMDES-PPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHIDAVLLSY 62
G +DES Y++++DE +LD G +E+ +D V K L+ + + A+LL++
Sbjct: 15 GGVDESGKNLYVVEIDEDIFILDAGLMFPENELLGIDIVIPDFKYLEENKDRVKAILLTH 74
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTF 109
+GALPY++ K + P++ T + + + + ++R+ F
Sbjct: 75 GHEDAIGALPYLLQK--IKAPVYGTELTIALAKSALKEHRKLRFKNF 119
>gi|78186471|ref|YP_374514.1| metallo-beta-lactamase superfamily protein [Chlorobium luteolum DSM
273]
gi|78166373|gb|ABB23471.1| metallo-beta-lactamase superfamily protein [Chlorobium luteolum DSM
273]
Length = 464
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKR-----HVHHIDAVLLSYPDVAHLGALPYM 74
C++L+V F +LLDCG + D + L R ++A++LS+ + H G +P +
Sbjct: 16 CHILRVGRFTVLLDCGLIQ--GSDVEEALNRAPFAFDPERVEAMILSHGHIDHSGRIPLL 73
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
V K G + P+F + ++ + D
Sbjct: 74 V-KRGFTGPVFTGDATADLARVLLLD 98
>gi|348686031|gb|EGZ25846.1| hypothetical protein PHYSODRAFT_478942 [Phytophthora sojae]
Length = 733
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMF----SMDFVKELKRHVHHIDAVL 59
I+++ L + C +L+ I+LDCG + S+ F ++ ID +L
Sbjct: 16 IMRIMPLGAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFDGVE--AEEIDLLL 73
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+++ + H+ ALP+ K +F T P + QM + D +V
Sbjct: 74 ITHFHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRDFLRV 118
>gi|301111988|ref|XP_002905073.1| cleavage and polyadenylation specificity factor subunit 3
[Phytophthora infestans T30-4]
gi|262095403|gb|EEY53455.1| cleavage and polyadenylation specificity factor subunit 3
[Phytophthora infestans T30-4]
Length = 724
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMF----SMDFVKELKRHVHHIDAVL 59
I+++ L + C +L+ I+LDCG + S+ F ++ ID +L
Sbjct: 16 IMRIMPLGAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFDGVE--AEEIDLLL 73
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+++ + H+ ALP+ K +F T P + QM + D +V
Sbjct: 74 ITHFHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRDFLRV 118
>gi|345017207|ref|YP_004819560.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344032550|gb|AEM78276.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 542
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-------DEMFSMDFVKELKRHVHHIDA 57
+K++ L + + CYL++ ++ K L+DCG DE+ +F+ + V ID
Sbjct: 1 MKISFLGAAKEVTGSCYLVETEKTKFLVDCGMFQGGEVEDELNYQEFIFD----VADIDF 56
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
VLL++ + H G +P ++ K G I+AT
Sbjct: 57 VLLTHAHIDHSGRIP-LLYKRGYRKRIYAT 85
>gi|448821646|ref|YP_007414808.1| Metallo-beta-lactamase superfamily protein [Lactobacillus
plantarum ZJ316]
gi|448275143|gb|AGE39662.1| Metallo-beta-lactamase superfamily protein [Lactobacillus
plantarum ZJ316]
Length = 574
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHV 52
M+S I++T G + Y ++VD +LDCG +E+ +D V L+ +
Sbjct: 1 MSSEIQITPFGGVRENGKNMYAVEVDGDIYILDCGLKYPENELLGIDIVIPDFSYLRENA 60
Query: 53 HHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY + + + P+F +
Sbjct: 61 DRIVGVFLTHGHADAIGALPYFLNE--FNVPVFGS 93
>gi|254556945|ref|YP_003063362.1| metallo-beta-lactamase superfamily protein () [Lactobacillus
plantarum JDM1]
gi|300768260|ref|ZP_07078165.1| metallo-beta-lactamase superfamily protein [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308180934|ref|YP_003925062.1| metallo-beta-lactamase superfamily protein () [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|380032879|ref|YP_004889870.1| metallo-beta-lactamase superfamily protein [Lactobacillus
plantarum WCFS1]
gi|418275675|ref|ZP_12890998.1| metallo-beta-lactamase superfamily protein [Lactobacillus
plantarum subsp. plantarum NC8]
gi|254045872|gb|ACT62665.1| metallo-beta-lactamase superfamily protein (putative)
[Lactobacillus plantarum JDM1]
gi|300494324|gb|EFK29487.1| metallo-beta-lactamase superfamily protein [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308046425|gb|ADN98968.1| metallo-beta-lactamase superfamily protein (putative)
[Lactobacillus plantarum subsp. plantarum ST-III]
gi|342242122|emb|CCC79356.1| metallo-beta-lactamase superfamily protein [Lactobacillus
plantarum WCFS1]
gi|376009226|gb|EHS82555.1| metallo-beta-lactamase superfamily protein [Lactobacillus
plantarum subsp. plantarum NC8]
Length = 574
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHV 52
M+S I++T G + Y ++VD +LDCG +E+ +D V L+ +
Sbjct: 1 MSSEIQITPFGGVRENGKNMYAVEVDGDIYILDCGLKYPENELLGIDIVIPDFSYLRENA 60
Query: 53 HHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY + + + P+F +
Sbjct: 61 DRIVGVFLTHGHADAIGALPYFLNE--FNVPVFGS 93
>gi|456011889|gb|EMF45609.1| Late competence protein ComEC, DNA transport [Planococcus
halocryophilus Or1]
Length = 373
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 22 LLQVDEFKILLDCG-WDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
LL+V+ F IL+D G W +D++K+ + + ++D V+ ++PD H+G L ++G+
Sbjct: 69 LLEVEGFSILIDAGNWKSTEVIDYLKQ--QGIKNLDIVVGTHPDADHIGQLAQVIGE 123
>gi|433616379|ref|YP_007193174.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Sinorhizobium meliloti GR4]
gi|429554626|gb|AGA09575.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Sinorhizobium meliloti GR4]
Length = 531
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 14/90 (15%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-------DEMFSMDFVKELKRHVHHIDA 57
I+ +GT+ S C L++ KIL+DCG E+ DF + K IDA
Sbjct: 7 IRFHGAAGTVTGS--CQLVEFGTTKILVDCGLFQGSKTEKELNYRDFPFDPKT----IDA 60
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
V+L++ + H G LP + + G PIFAT
Sbjct: 61 VILTHAHIDHSGLLPKL-ARLGYDGPIFAT 89
>gi|52841255|ref|YP_095054.1| metallo-beta lactamase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|52628366|gb|AAU27107.1| metallo-beta lactamase family [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 453
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH--------VHHID 56
+K+T L T + YLL + KIL+DCG + + KEL+ H ID
Sbjct: 1 MKLTFLGATETVTGSKYLLTIGSKKILIDCGLFQGY-----KELRLRNWAPLPIDPHDID 55
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
AV++++ + H G LP +V K G I+ T
Sbjct: 56 AVIITHAHIDHSGYLPLLV-KNGFQGKIYTT 85
>gi|355571913|ref|ZP_09043121.1| KH-domain/beta-lactamase-domain protein [Methanolinea tarda NOBI-1]
gi|354825009|gb|EHF09244.1| KH-domain/beta-lactamase-domain protein [Methanolinea tarda NOBI-1]
Length = 629
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW--DEMFSMDFVKELKRH-VHHIDAVLLS 61
+++T L + +LL E ++L+DCG D S ++ + H + +DAV+L+
Sbjct: 179 VRVTMLGCCREVGRAAFLLSTPESRVLIDCGEKPDNSASTPYLYVPEIHPLSQLDAVVLT 238
Query: 62 YPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ + H +P + K G P+++T P + M D V
Sbjct: 239 HAHLDHCALVPLLF-KYGYDGPVYSTPPTRDLSAMLQLDYLDV 280
>gi|68074769|ref|XP_679301.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56500016|emb|CAH98160.1| conserved hypothetical protein [Plasmodium berghei]
Length = 1171
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 30 ILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALP 72
IL++CGWD+ F +D VK + + ++D + ++ ++++G LP
Sbjct: 99 ILINCGWDDNFCLDDVKNIIKVCEYVDIIFITNHGLSYVGCLP 141
>gi|389816834|ref|ZP_10207767.1| late competence protein [Planococcus antarcticus DSM 14505]
gi|388464982|gb|EIM07305.1| late competence protein [Planococcus antarcticus DSM 14505]
Length = 374
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 22 LLQVDEFKILLDCG-WDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
LL+ + F +L+D G W+ ++D++K+ + + ID V+ ++PD H+G L ++G+
Sbjct: 70 LLEFEGFSMLIDAGNWNSKEAVDYLKQ--QEIQDIDIVVGTHPDADHIGQLAQVIGE 124
>gi|452819966|gb|EME27015.1| cleavage and polyadenylation specifity factor protein [Galdieria
sulphuraria]
Length = 717
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDAVLL 60
+++T L + C LL I+ DCG + + S+ F E+ ID +L+
Sbjct: 24 LQITPLGAGNEVGRSCVLLTYKNKTIMFDCGVHPAYSGLASLPFFDEMDP--RSIDLILI 81
Query: 61 SYPDVAHLGALPYMVGK--CGLSCPIFATIPVYKMGQMFMYDLFQV 104
++ + H ALPY++ K C + +F T P + + + D +V
Sbjct: 82 THFHLDHCAALPYLLEKTNCNPNARVFMTHPTKAIYKTLLSDFVRV 127
>gi|358448218|ref|ZP_09158723.1| beta-lactamase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
gi|357227646|gb|EHJ06106.1| beta-lactamase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
Length = 453
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 14/104 (13%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH--------VHHID 56
+K+ L GT + YLL D ++L+DCG M+ VK L+R ID
Sbjct: 1 MKLRFLGGTGTVTGSRYLLSDDRHRVLVDCG---MYQG--VKTLRRRNWAKFPVDPSTID 55
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
AV+L++ + H G LP +V K G ++ T +++ ++ + D
Sbjct: 56 AVVLTHAHIDHSGYLPALV-KNGFKGKVYCTKATHELCKVLLPD 98
>gi|423606482|ref|ZP_17582375.1| hypothetical protein IIK_03063 [Bacillus cereus VD102]
gi|401242038|gb|EJR48416.1| hypothetical protein IIK_03063 [Bacillus cereus VD102]
Length = 436
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSY 62
S++++ G + CY ++ E KIL DCG + + + K + V +DAV LS+
Sbjct: 16 SMMRVEVWGGAGEYGRSCYFVKNKETKILFDCGINRSYKDSYPKIEREVVPFLDAVFLSH 75
Query: 63 PDVAHLGALPYMVGKCGLSCPIFAT 87
H +LP ++ K G I+ T
Sbjct: 76 IHEDHTMSLP-LLAKYGYKKKIWTT 99
>gi|320159695|ref|YP_004172919.1| hypothetical protein ANT_02850 [Anaerolinea thermophila UNI-1]
gi|319993548|dbj|BAJ62319.1| hypothetical protein ANT_02850 [Anaerolinea thermophila UNI-1]
Length = 465
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFV---KELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
+LL+++ ++LL+CG + D + + +DAV+LS+ + H G LP +V K
Sbjct: 17 HLLEINGARVLLECGLFQGRRADTYTRNRTFPFNPRRLDAVILSHAHIDHSGNLPNLV-K 75
Query: 78 CGLSCPIFATIPVYKMGQMFMYD 100
G PI+AT ++ ++ + D
Sbjct: 76 QGFEGPIYATPATAELAEIMVRD 98
>gi|315641462|ref|ZP_07896534.1| metallo-beta-lactamase superfamily protein [Enterococcus italicus
DSM 15952]
gi|315482750|gb|EFU73274.1| metallo-beta-lactamase superfamily protein [Enterococcus italicus
DSM 15952]
Length = 562
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
IK+ L G + Y+ +V E +LDCG +E+ +D V L+ + +
Sbjct: 7 IKLIPLGGVRENGKNMYVAEVGEDIFVLDCGLRYPENELLGIDTVIPDFSYLEENAERVA 66
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMY 99
V L++ +GALPY + + + P+F T ++ +M ++
Sbjct: 67 GVFLTHGHADAIGALPYFLER--VPVPVFGTKLTVELAKMIVH 107
>gi|28211481|ref|NP_782425.1| metallo-beta-lactamase/flavodoxin domain-containing protein
[Clostridium tetani E88]
gi|28203922|gb|AAO36362.1| flavoprotein [Clostridium tetani E88]
Length = 395
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKRHV--HHIDAVLLSYPDVAHLGALPYMVGKC 78
YL++ D+ +L+D W E FS +FV+ LK+ V + ID +++++ ++ H GALP ++ +
Sbjct: 38 YLIK-DKKIVLIDTVW-EPFSKEFVENLKKEVDLNKIDYIIMNHNEIDHSGALPLLMKEI 95
Query: 79 GLSCPIFAT 87
+ PI+ T
Sbjct: 96 P-NTPIYCT 103
>gi|399575311|ref|ZP_10769069.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halogranum salarium B-1]
gi|399239579|gb|EJN60505.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halogranum salarium B-1]
Length = 641
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFSMDFVKELKRHVHHIDAVL 59
+++T+L + ++L E +IL+DCG DE+ + + L + IDAV+
Sbjct: 182 VRITTLGCCREVGRASFVLSTPETRILIDCGDKPGAEDEVPYLHVPEALGAGANTIDAVV 241
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
L++ + H +P + K G PI+ T P + + D V
Sbjct: 242 LTHAHLDHSALIPLLF-KYGYDGPIYCTEPTRDLMGLLTLDYLDV 285
>gi|367016955|ref|XP_003682976.1| hypothetical protein TDEL_0G03980 [Torulaspora delbrueckii]
gi|359750639|emb|CCE93765.1| hypothetical protein TDEL_0G03980 [Torulaspora delbrueckii]
Length = 775
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMF----SMDFVKELKRHVHHIDAVLL 60
+K +L G + C++LQ I+LD G S+ F E + ID +L+
Sbjct: 9 LKFFALGGGNEVGRSCHILQFKGKTIMLDAGVHPAHQGYSSLPFYDEFD--LSKIDVLLI 66
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
S+ V H +LPY++ K +F T P + + + D +V
Sbjct: 67 SHFHVDHAASLPYVMQKTNFQGRVFMTHPTKAIYRWLLRDFVRV 110
>gi|359441164|ref|ZP_09231067.1| metallo-beta-lactamase family protein, RNA-specific
[Pseudoalteromonas sp. BSi20429]
gi|358036974|dbj|GAA67316.1| metallo-beta-lactamase family protein, RNA-specific
[Pseudoalteromonas sp. BSi20429]
Length = 456
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 20 CYLLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKC 78
C+ L V+E +L+DCG + +K ++ HI A+++++ + H+G +PY++
Sbjct: 16 CHELVVNEQTSVLIDCGLFQGEDSKADLSIKFNITHITALIVTHCHIDHVGRIPYLLA-A 74
Query: 79 GLSCPIFATIPVYKMGQMFMYDLFQV 104
G PIF +I + + + D +V
Sbjct: 75 GFKGPIFTSIASASLLPLVIEDALKV 100
>gi|357406777|ref|YP_004918701.1| ribonuclease of the metallo-beta-lactamase superfamily
[Methylomicrobium alcaliphilum 20Z]
gi|351719442|emb|CCE25118.1| putative ribonuclease of the metallo-beta-lactamase superfamily
[Methylomicrobium alcaliphilum 20Z]
Length = 467
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 6 KMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKR---HVHHIDAVLLSY 62
K+T L T + CYLL+ + +IL+DCG + + R + IDAV+LS+
Sbjct: 3 KLTFLGATGQVTGSCYLLESNAKRILIDCGIFQGGKAADKQNRSRFPFNPSSIDAVVLSH 62
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD--LFQVR 105
+ H G LP + K G +F T ++ ++ + D L Q+R
Sbjct: 63 AHLDHSGRLPQLY-KDGFRGDLFLTEGSVRLVELLLKDAALLQLR 106
>gi|120555563|ref|YP_959914.1| beta-lactamase domain-containing protein [Marinobacter aquaeolei
VT8]
gi|120325412|gb|ABM19727.1| beta-lactamase domain protein [Marinobacter aquaeolei VT8]
Length = 453
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 14/104 (13%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH--------VHHID 56
+K+ L GT + YLL D ++L+DCG M+ VK L+R ID
Sbjct: 1 MKLRFLGGTGTVTGSRYLLSDDNHRMLVDCG---MYQG--VKTLRRRNWAKFPVDPSTID 55
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
AV+L++ + H G LP +V K G I+ T +++ ++ + D
Sbjct: 56 AVVLTHAHIDHSGYLPALV-KNGFKGKIYCTKATHELCKVLLPD 98
>gi|423629351|ref|ZP_17605099.1| hypothetical protein IK5_02202 [Bacillus cereus VD154]
gi|401268106|gb|EJR74161.1| hypothetical protein IK5_02202 [Bacillus cereus VD154]
Length = 436
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSY 62
S++++ G + CY ++ E KIL DCG + + + K + V +DAV LS+
Sbjct: 16 SMMRVEVWGGAGEYGRSCYFVKNKETKILFDCGINRSYEDSYPKIEREVVPFLDAVFLSH 75
Query: 63 PDVAHLGALPYMVGKCGLSCPIFAT------IPVY 91
H LP ++ K G I+ T +P+Y
Sbjct: 76 IHEDHTMGLP-LLAKYGYKKKIWTTRYTKEQLPLY 109
>gi|326391500|ref|ZP_08213034.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
ethanolicus JW 200]
gi|325992476|gb|EGD50934.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
ethanolicus JW 200]
Length = 542
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-------DEMFSMDFVKELKRHVHHIDA 57
+K++ L + + CYL++ ++ K L+DCG DE+ +F+ + V ID
Sbjct: 1 MKISFLGAAKEVTGSCYLVETEKTKFLVDCGMFQGGEVEDELNYQEFIFD----VGDIDF 56
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
VLL++ + H G +P ++ K G I+AT
Sbjct: 57 VLLTHAHIDHSGRIP-LLYKRGYRKRIYAT 85
>gi|452205306|ref|YP_007485435.1| metallo-beta-lactamase family protein, RNA-specific
[Dehalococcoides mccartyi BTF08]
gi|452112362|gb|AGG08093.1| metallo-beta-lactamase family protein, RNA-specific
[Dehalococcoides mccartyi BTF08]
Length = 468
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 23/113 (20%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHH---------- 54
IK+ L + + YLLQ D ++L+DCG + +RH+ +
Sbjct: 3 IKIQFLGAAQNVTGSRYLLQTDRTRLLVDCGLYQ----------ERHLQNRNWQPFDVPP 52
Query: 55 --IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
++AVL+S+ + H G LP +V K G P++ T ++ ++ + D +++
Sbjct: 53 ESLNAVLVSHAHIDHCGLLPKLV-KDGYKGPVYLTAATAEIARISLADAGKIQ 104
>gi|452203809|ref|YP_007483942.1| metallo-beta-lactamase family protein, RNA-specific
[Dehalococcoides mccartyi DCMB5]
gi|452110868|gb|AGG06600.1| metallo-beta-lactamase family protein, RNA-specific
[Dehalococcoides mccartyi DCMB5]
Length = 468
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 23/113 (20%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHH---------- 54
IK+ L + + YLLQ D ++L+DCG + +RH+ +
Sbjct: 3 IKIQFLGAAQNVTGSRYLLQTDRTRLLVDCGLYQ----------ERHLQNRNWQPFDVPP 52
Query: 55 --IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
++AVL+S+ + H G LP +V K G P++ T ++ ++ + D +++
Sbjct: 53 ESLNAVLVSHAHIDHCGLLPKLV-KDGYKGPVYLTAATAEIARISLADAGKIQ 104
>gi|419827962|ref|ZP_14351454.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-1A2]
gi|419831623|ref|ZP_14355092.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-61A2]
gi|422915995|ref|ZP_16950346.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-02A1]
gi|423811715|ref|ZP_17714949.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-55C2]
gi|423846935|ref|ZP_17718736.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-59A1]
gi|423878600|ref|ZP_17722345.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-60A1]
gi|423996413|ref|ZP_17739690.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-02C1]
gi|424015116|ref|ZP_17754972.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-55B2]
gi|424018227|ref|ZP_17758039.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-59B1]
gi|424623604|ref|ZP_18062088.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-50A1]
gi|424628177|ref|ZP_18066494.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-51A1]
gi|424632129|ref|ZP_18070257.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-52A1]
gi|424635217|ref|ZP_18073247.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-55A1]
gi|424639014|ref|ZP_18076919.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-56A1]
gi|424647295|ref|ZP_18084981.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-57A1]
gi|443526139|ref|ZP_21092239.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-78A1]
gi|341641544|gb|EGS66080.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-02A1]
gi|408017003|gb|EKG54526.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-50A1]
gi|408022532|gb|EKG59740.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-52A1]
gi|408028026|gb|EKG64950.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-56A1]
gi|408028323|gb|EKG65226.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-55A1]
gi|408037918|gb|EKG74280.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-57A1]
gi|408059641|gb|EKG94390.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-51A1]
gi|408624326|gb|EKK97275.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-1A2]
gi|408637205|gb|EKL09284.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-55C2]
gi|408644604|gb|EKL16282.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-60A1]
gi|408645717|gb|EKL17355.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-59A1]
gi|408652510|gb|EKL23725.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-61A2]
gi|408855263|gb|EKL94976.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-02C1]
gi|408862391|gb|EKM01908.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-55B2]
gi|408871348|gb|EKM10591.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-59B1]
gi|443455515|gb|ELT19282.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-78A1]
Length = 438
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 16 CHELRADGQALLIDCGLFQGADERPLAVEFA------LAHVDALILTHAHIDHIGRLPWL 69
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ G PI+ T ++ + + D
Sbjct: 70 LA-AGFKQPIYCTAATAELVPLMLED 94
>gi|153826736|ref|ZP_01979403.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|149739451|gb|EDM53689.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
Length = 460
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 38 CHELRADGQALLIDCGLFQGADERPLAVEFA------LAHVDALILTHAHIDHIGRLPWL 91
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ G PI+ T ++ + + D
Sbjct: 92 LA-AGFKQPIYCTAATAELVPLMLED 116
>gi|385803384|ref|YP_005839784.1| beta-lactamase [Haloquadratum walsbyi C23]
gi|339728876|emb|CCC40055.1| beta-lactamase domain protein [Haloquadratum walsbyi C23]
Length = 538
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMV--GK 77
CY LQ ++ +DCG + + ++ IDAV +++ + H+G LP G
Sbjct: 19 CYHLQAGDYDYFIDCGLKQSETPEYPLFEDVSQGQIDAVFITHAHIDHIGGLPVAEHHGL 78
Query: 78 CGLSCPIFATIPVYKMGQMFMYDLFQV 104
IF T P + + ++D Q+
Sbjct: 79 LDDDASIFMTRPTNALASILLHDSLQI 105
>gi|110667945|ref|YP_657756.1| metal-dependent RNase [Haloquadratum walsbyi DSM 16790]
gi|109625692|emb|CAJ52124.1| beta-lactamase domain protein [Haloquadratum walsbyi DSM 16790]
Length = 538
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMV--GK 77
CY LQ ++ +DCG + + ++ IDAV +++ + H+G LP G
Sbjct: 19 CYHLQAGDYDYFIDCGLKQSETPEYPLFEDVSQGQIDAVFITHAHIDHIGGLPVAEHHGL 78
Query: 78 CGLSCPIFATIPVYKMGQMFMYDLFQV 104
IF T P + + ++D Q+
Sbjct: 79 LDDDASIFMTRPTNALASILLHDSLQI 105
>gi|282856021|ref|ZP_06265310.1| ribonuclease [Pyramidobacter piscolens W5455]
gi|282586140|gb|EFB91419.1| ribonuclease [Pyramidobacter piscolens W5455]
Length = 594
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKE-LKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79
YLL+ + L+DCG + D + + IDAVLL++ + H G +P +V K G
Sbjct: 17 YLLEAGGHRFLVDCGMHQGEREDANDDPFPYAANSIDAVLLTHAHIDHSGRIPKLV-KEG 75
Query: 80 LSCPIFATIPVYKMGQMFMYD 100
I+AT+P ++ ++ D
Sbjct: 76 FRGKIYATLPTIELTEILWDD 96
>gi|256828208|ref|YP_003156936.1| beta-lactamase domain-containing protein [Desulfomicrobium
baculatum DSM 4028]
gi|256577384|gb|ACU88520.1| beta-lactamase domain protein [Desulfomicrobium baculatum DSM 4028]
Length = 547
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 25/110 (22%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG------------WDE--MFSMDFVKELKR 50
+K+T L + CY+L+ ++ + +DCG WDE M+ +
Sbjct: 1 MKITFLGAARTVTGSCYVLECEQTRFAIDCGMHQGNRDIDGRNWDENGMYRPE------- 53
Query: 51 HVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+D +LL++ + H G LP +V + G P++ T P + + + D
Sbjct: 54 ---SLDFILLTHAHIDHSGLLPRLVSQ-GFKGPVYTTAPTKDLLGIMLED 99
>gi|75758998|ref|ZP_00739107.1| putative Zn-dependent hydrolases (beta-lactamase superfamily)
[Bacillus thuringiensis serovar israelensis ATCC 35646]
gi|74493533|gb|EAO56640.1| putative Zn-dependent hydrolases (beta-lactamase superfamily)
[Bacillus thuringiensis serovar israelensis ATCC 35646]
Length = 436
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSY 62
S++++ G + CY ++ E KIL DCG + + + + + V +DAV LS+
Sbjct: 16 SMMRIEVWGGAGEYGRSCYFVKNKETKILFDCGINRSYEKSYPEIEREAVPFLDAVFLSH 75
Query: 63 PDVAHLGALPYMVGKCGLSCPIFAT------IPVY 91
H LP ++ K G I+ T +P+Y
Sbjct: 76 IHEDHTMGLP-LLAKYGYKKKIWTTRYTKEQLPLY 109
>gi|156936804|ref|YP_001434600.1| beta-lactamase domain-containing protein [Ignicoccus hospitalis
KIN4/I]
gi|156565788|gb|ABU81193.1| beta-lactamase domain protein [Ignicoccus hospitalis KIN4/I]
Length = 652
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFSMDFVKELKRHVHHID 56
T+ +++T+L + LL+ E K+LLD G +D V+E+ + +D
Sbjct: 179 TNYVRITALGAFKEVGRSAILLETKESKVLLDFGANVGSYDPQKHFPKVEEVP--IDELD 236
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
AV++++ + H G +P++ K G P++ T P + + D +V
Sbjct: 237 AVIVTHAHLDHCGLVPWLY-KYGYRGPVYVTQPTRDLMYLVQKDYIEV 283
>gi|30677952|ref|NP_178282.2| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
gi|332278175|sp|Q8GUU3.2|CPS3B_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3-II; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit II; Short=AtCPSF73-II;
Short=CPSF 73 kDa subunit II; AltName: Full=Protein
EMBRYO SAC DEVELOPMENT ARREST 26
gi|62320470|dbj|BAD94982.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
gi|330250395|gb|AEC05489.1| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
Length = 613
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCG-------WDEMFSMDFVKELKRHVHHIDAVLLSY 62
L + C ++ ++ KI+ DCG + + + + + I +++++
Sbjct: 8 LGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITH 67
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
+ H+GALPY CG + PI+ + P + + + D +V D
Sbjct: 68 FHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVD 112
>gi|440493393|gb|ELQ75870.1| mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF
subunit) [Trachipleistophora hominis]
Length = 801
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 20 CYLLQVDEFKILLDCGWDEMF----SMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMV 75
C + ILLDCG + S+ F+ + ++ +DAV +++ + H GALPY+
Sbjct: 22 CIHITYKSLSILLDCGVHPAYTGTASLPFLDLI--NLSTVDAVFITHFHLDHAGALPYLT 79
Query: 76 GKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
K + +F T P + + + D ++
Sbjct: 80 EKTAFTGKVFMTHPTKAILRWLLNDYIRI 108
>gi|403223285|dbj|BAM41416.1| uncharacterized protein TOT_030000678 [Theileria orientalis strain
Shintoku]
Length = 706
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 46 KELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
K L + ID+ ++S+ + H+GALP++ + G S P++ T P + + + D
Sbjct: 112 KALNNVTNTIDSAIISHFHIDHVGALPFLTEEIGYSGPVYMTYPTKALSPLLLRD 166
>gi|387814960|ref|YP_005430447.1| metallo-beta-lactamase [Marinobacter hydrocarbonoclasticus ATCC
49840]
gi|381339977|emb|CCG96024.1| putative Metallo-beta-lactamase family protein precursor
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 453
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 14/104 (13%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRH--------VHHID 56
+K+ L GT + YLL D ++L+DCG M+ VK L+R ID
Sbjct: 1 MKLRFLGGTGTVTGSRYLLSDDNHRMLVDCG---MYQG--VKTLRRRNWAKFPVDPSTID 55
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
AV+L++ + H G LP +V K G I+ T +++ ++ + D
Sbjct: 56 AVVLTHAHIDHSGYLPALV-KNGFKGKIYCTKATHELCKVLLPD 98
>gi|15789650|ref|NP_279474.1| mRNA 3'-end processing factor-like protein [Halobacterium sp.
NRC-1]
gi|169235363|ref|YP_001688563.1| mRNA 3'-end processing factor-like protein [Halobacterium salinarum
R1]
gi|10580012|gb|AAG18954.1| mRNA 3'-end processing factor homolog [Halobacterium sp. NRC-1]
gi|167726429|emb|CAP13214.1| beta-lactamase domain protein [Halobacterium salinarum R1]
Length = 641
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFSMDFVKELKRHVHHIDAVL 59
+++T+L + ++L E +IL+DCG DE+ + + L + IDAV+
Sbjct: 182 VRVTTLGCCREVGRASFVLSTPETRILVDCGDKPGSEDEVPYLQVQEALAGGANTIDAVI 241
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
L++ + H +P + K G PI+ T P + + D V
Sbjct: 242 LTHAHLDHSAFIPLLF-KYGYDGPIYCTEPTRDLMGLLTLDYLDV 285
>gi|359472593|ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261060 [Vitis vinifera]
Length = 2299
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 20 CYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDAVLLSYPDVAHLGALP 72
C ++ ++ +I+ DCG D DF + + ID +++++ + H+GALP
Sbjct: 18 CAVVTINGKRIMFDCGMHMGYLDHRRFPDFSLISKSADFNTAIDCIVITHFHLDHVGALP 77
Query: 73 YMVGKCGLSCPIFATI 88
Y CG S PI+ T+
Sbjct: 78 YFTEVCGYSGPIYMTV 93
>gi|291546658|emb|CBL19766.1| Predicted exonuclease of the beta-lactamase fold involved in RNA
processing [Ruminococcus sp. SR1/5]
Length = 538
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+K+T + T + + CY L+ K L+D G ++ KEL +D VLL++
Sbjct: 1 MKITFIGATHEVTGSCYYLEAAGRKFLVDYGMEQGPDYYENKELPVAPGDLDFVLLTHAH 60
Query: 65 VAHLGALPYMVGKCGLSCPIFAT 87
+ H G LP + K G PI+AT
Sbjct: 61 MDHSGNLPALYAK-GYQGPIYAT 82
>gi|4220489|gb|AAD12712.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
Length = 837
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 20 CYLLQVDEFKILLDCGW-------DEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALP 72
C ++ ++ KI+ DCG + + + + + I +++++ + H+GALP
Sbjct: 18 CVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITHFHMDHVGALP 77
Query: 73 YMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
Y CG + PI+ + P + + + D +V D
Sbjct: 78 YFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVD 112
>gi|433656089|ref|YP_007299797.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433294278|gb|AGB20100.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 537
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFV------KELKRHVHHIDAV 58
+K+T L + + CYL++ + K L+DCG MF + +E V ID +
Sbjct: 1 MKITFLGAAKEVTGSCYLVETESTKFLVDCG---MFQGSEIEDEFNYQEFAFDVDEIDFM 57
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
LL++ + H G +P ++ K G I+AT
Sbjct: 58 LLTHAHIDHSGRIP-LLYKRGYKKKIYAT 85
>gi|365902989|ref|ZP_09440812.1| metallo-beta-lactamase superfamily hydrolase [Lactobacillus
malefermentans KCTC 3548]
Length = 579
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHV 52
M+S IK++ G + Y++ +++ +LDCG +E+ +D V L+ +
Sbjct: 1 MSSKIKISPFGGVRENGKNMYVVDINDGIYILDCGLQYPENELLGIDIVIPDFSYLEENK 60
Query: 53 HHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
I V L++ +GALPY + K + P+F +
Sbjct: 61 DRIVGVFLTHGHADAIGALPYFLNK--FNVPVFGS 93
>gi|418399594|ref|ZP_12973142.1| Metallo-beta-lactamase superfamily protein [Sinorhizobium
meliloti CCNWSX0020]
gi|359506415|gb|EHK78929.1| Metallo-beta-lactamase superfamily protein [Sinorhizobium
meliloti CCNWSX0020]
Length = 531
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 14/90 (15%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-------DEMFSMDFVKELKRHVHHIDA 57
I+ +GT+ S C L++ KIL+DCG E+ DF + K IDA
Sbjct: 7 IRFHGAAGTVTGS--CQLVEFGTTKILVDCGLFQGSKTEKELNYRDFPFDPKT----IDA 60
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
V+L++ + H G LP + + G PIFAT
Sbjct: 61 VVLTHAHIDHSGLLPKL-ARLGYDGPIFAT 89
>gi|304317880|ref|YP_003853025.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779382|gb|ADL69941.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 538
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFV------KELKRHVHHIDAV 58
+K+T L + + CYL++ + K L+DCG MF + +E V ID +
Sbjct: 1 MKITFLGAAKEVTGSCYLVETESTKFLVDCG---MFQGSEIEDEFNYQEFAFDVDEIDFM 57
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
LL++ + H G +P ++ K G I+AT
Sbjct: 58 LLTHAHIDHSGRIP-LLYKRGYKKKIYAT 85
>gi|27372065|gb|AAN87883.1| FEG protein [Arabidopsis thaliana]
Length = 613
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCG-------WDEMFSMDFVKELKRHVHHIDAVLLSY 62
L + C ++ ++ KI+ DCG + + + + + I +++++
Sbjct: 8 LGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITH 67
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
+ H+GALPY CG + PI+ + P + + + D +V D
Sbjct: 68 FHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVD 112
>gi|325186851|emb|CCA21396.1| cleavage and polyadenylation specific factor 3 puta [Albugo
laibachii Nc14]
Length = 759
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMF----SMDFVKELKRHVHHIDAVL 59
I+++ L + C +L+ I+LDCG + S+ F ++ ID +L
Sbjct: 17 IMRIMPLGAGNEVGRSCIILKFKGKTIMLDCGVHPGYSGHGSLPFFDGVE--AEEIDLLL 74
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+++ + H+ ALP+ K +F T P + QM + D +V
Sbjct: 75 VTHFHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRDFLRV 119
>gi|354611945|ref|ZP_09029897.1| KH-domain/beta-lactamase-domain protein [Halobacterium sp. DL1]
gi|353191523|gb|EHB57029.1| KH-domain/beta-lactamase-domain protein [Halobacterium sp. DL1]
Length = 641
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG-----WDEMFSMDFVKELKRHVHHIDAVL 59
+++T+L + ++L E +IL+DCG DE+ + + L IDAV+
Sbjct: 182 VRITTLGCCREVGRASFILSTPETRILIDCGDKPGSEDEVPYLQVQEALGAGAATIDAVV 241
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
L++ + H +P + K G PI+ T P + + D V
Sbjct: 242 LTHAHLDHSALIPILF-KYGYDGPIYTTEPTRDLMGLLTLDYLDV 285
>gi|347532112|ref|YP_004838875.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Roseburia hominis A2-183]
gi|345502260|gb|AEN96943.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Roseburia hominis A2-183]
Length = 535
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+K+ L + + C+ L+ + +L+DCG ++ + +E+ + ID V +++
Sbjct: 1 MKLEFLGAAHEVTGSCHYLEFADKHVLVDCGMEQGPDLYVNQEIPVNASTIDYVFVTHAH 60
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
+ H G LP M+ G IF T +++ ++ + D
Sbjct: 61 IDHSGLLP-MLYNHGFRGQIFTTTATHQLCEIMLKD 95
>gi|270208655|ref|YP_003329426.1| hypothetical protein pSmeSM11ap128 [Sinorhizobium meliloti]
gi|76880929|gb|ABA56099.1| conserved hypothetical protein [Sinorhizobium meliloti]
Length = 531
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 14/90 (15%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-------DEMFSMDFVKELKRHVHHIDA 57
I+ +GT+ S C L++ KIL+DCG E+ DF + K IDA
Sbjct: 7 IRFHGAAGTVTGS--CQLVESGATKILVDCGLFQGSKTEKELNYRDFPFDPKT----IDA 60
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
V+L++ + H G LP + + G PIFAT
Sbjct: 61 VILTHAHIDHSGLLPKL-ARLGYDGPIFAT 89
>gi|421766748|ref|ZP_16203517.1| Zn-dependent hydrolase [Lactococcus garvieae DCC43]
gi|407624774|gb|EKF51507.1| Zn-dependent hydrolase [Lactococcus garvieae DCC43]
Length = 578
Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
IK+T L G + YL +V+E +LD G +M +DFV L + +
Sbjct: 4 IKITPLGGVREFGKNMYLAEVNEQIFVLDAGLKYADSDMLGIDFVIPDIDYLVENADRVA 63
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ L++ +GALPY+V + L P+F +
Sbjct: 64 GIFLTHGHADSIGALPYIVSE--LRVPVFGS 92
>gi|423563912|ref|ZP_17540188.1| hypothetical protein II5_03316 [Bacillus cereus MSX-A1]
gi|401198406|gb|EJR05326.1| hypothetical protein II5_03316 [Bacillus cereus MSX-A1]
Length = 436
Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSY 62
S++++ G + CY ++ E KIL DCG + + + + + V +DAV LS+
Sbjct: 16 SMMRIEVWGGAGEYGRSCYFVKNKETKILFDCGINRSYEKSYPEIEREAVPFLDAVFLSH 75
Query: 63 PDVAHLGALPYMVGKCGLSCPIFAT------IPVY 91
H LP ++ K G I+ T +P+Y
Sbjct: 76 IHEDHTMGLP-LLAKYGYKKKIWTTRYTKEQLPLY 109
>gi|420143864|ref|ZP_14651352.1| Metallo-beta-lactamase superfamily protein [Lactococcus garvieae
IPLA 31405]
gi|391855316|gb|EIT65865.1| Metallo-beta-lactamase superfamily protein [Lactococcus garvieae
IPLA 31405]
Length = 578
Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
IK+T L G + YL +V+E +LD G +M +DFV L + +
Sbjct: 4 IKITPLGGVREFGKNMYLAEVNEQIFVLDAGLKYADSDMLGIDFVIPDIDYLVENADRVA 63
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ L++ +GALPY+V + L P+F +
Sbjct: 64 GIFLTHGHADSIGALPYIVSE--LRVPVFGS 92
>gi|456356431|dbj|BAM90876.1| conserved hypothetical protein [Agromonas oligotrophica S58]
Length = 530
Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKR-----HVHHIDAVLLSYPDVAHLGALPYM 74
CYL++ + +IL+DCG + +KEL IDAVLL++ + H G LP +
Sbjct: 18 CYLVRTGKSQILIDCGLFQ--GQKTLKELNYGDFPFRPADIDAVLLTHAHIDHSGLLPKL 75
Query: 75 VGKCGLSCPIFAT 87
V + G IFAT
Sbjct: 76 V-RLGFDGKIFAT 87
>gi|430004998|emb|CCF20799.1| conserved protein of unknown function [Rhizobium sp.]
Length = 540
Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHV-----HHIDAVLLSYPDVAHLGALPYM 74
C+LL+ +E IL+DCG + + KEL +DAV+L++ + H G LP +
Sbjct: 20 CFLLRANERSILIDCGLFQGSKTE--KELSYRAFPFSPSTVDAVILTHSHIDHSGLLPKL 77
Query: 75 VGKCGLSCPIFAT 87
V K G PI+ T
Sbjct: 78 V-KEGYRGPIYCT 89
>gi|345856357|ref|ZP_08808845.1| metallo-beta-lactamase superfamily protein [Desulfosporosinus sp.
OT]
gi|344330559|gb|EGW41849.1| metallo-beta-lactamase superfamily protein [Desulfosporosinus sp.
OT]
Length = 578
Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 21 YLLQVDEFKILLDCGWDEMFS-MDFVKELKRHVH-----HIDAVLLSYPDVAHLGALPYM 74
YL++ E +IL+DCG MF +KEL IDAV+L++ + H G LP +
Sbjct: 17 YLVESGESRILIDCG---MFQGSKALKELNYDTFPYNPASIDAVVLTHAHIDHSGMLPKL 73
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ K G I+AT K+ + + D
Sbjct: 74 I-KAGFKGTIWATAETIKLCSIMLPD 98
>gi|339641614|ref|ZP_08663058.1| ribonuclease J 2 [Streptococcus sp. oral taxon 056 str. F0418]
gi|339454883|gb|EGP67498.1| ribonuclease J 2 [Streptococcus sp. oral taxon 056 str. F0418]
Length = 553
Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHH 54
S IK+ +L G + Y+ +VDE +LD G +E +D V L +
Sbjct: 2 SKIKIIALGGVRENGKNLYIAEVDELIFVLDTGLKYPENEQLGVDVVIPNMDYLYENSER 61
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
I V L++ +GALPY++ + + P+F + ++ ++F+
Sbjct: 62 IAGVFLTHGHADAIGALPYLLAETKV--PVFGSELTIELAKLFV 103
>gi|255718601|ref|XP_002555581.1| KLTH0G12606p [Lachancea thermotolerans]
gi|238936965|emb|CAR25144.1| KLTH0G12606p [Lachancea thermotolerans CBS 6340]
Length = 816
Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 20 CYLLQVDEFKILLDCGWDEMFS-----MDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C +L+ + I++D W+ S +DF EL V D +LLS P LGA +
Sbjct: 17 CGVLRFENVTIMVDPAWEGRGSWSSEQIDFWGEL---VAQADIILLSQPTAEFLGAYAML 73
Query: 75 ----VGKCGLSCPIFATIPVYKMGQMFMYDLF 102
+G +FAT+PV +G++ DL+
Sbjct: 74 YFKFLGHFKTRIAVFATLPVANLGRVTTLDLY 105
>gi|440712203|ref|ZP_20892828.1| hypothetical protein VC4260B_35730 [Vibrio cholerae 4260B]
gi|439972213|gb|ELP48510.1| hypothetical protein VC4260B_35730 [Vibrio cholerae 4260B]
Length = 438
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 16 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 69
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ G PI+ T ++ + + D
Sbjct: 70 LA-AGFKQPIYCTAATAELVPLMLED 94
>gi|429886670|ref|ZP_19368216.1| Metallo-beta-lactamase family protein, RNA-specific [Vibrio
cholerae PS15]
gi|429226456|gb|EKY32577.1| Metallo-beta-lactamase family protein, RNA-specific [Vibrio
cholerae PS15]
Length = 438
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 16 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 69
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ G PI+ T ++ + + D
Sbjct: 70 LA-AGFKQPIYCTAATAELVPLMLED 94
>gi|410727163|ref|ZP_11365385.1| hypothetical protein A370_03494 [Clostridium sp. Maddingley
MBC34-26]
gi|410599193|gb|EKQ53749.1| hypothetical protein A370_03494 [Clostridium sp. Maddingley
MBC34-26]
Length = 555
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
IK+ L G + ++ E I++DCG D+MF +D V L ++ I
Sbjct: 8 IKIIPLGGINEIGKNITAIEYKEDIIVIDCGLKFPDDDMFGIDIVIPDVSYLMKNSEKIK 67
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ L++ H+GALPY++ + L+ P++ T
Sbjct: 68 GIFLTHGHEDHIGALPYVLRQ--LNVPVYGT 96
>gi|424658155|ref|ZP_18095420.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae HE-16]
gi|408056299|gb|EKG91189.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae HE-16]
Length = 438
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 16 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 69
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ G PI+ T ++ + + D
Sbjct: 70 LA-AGFKQPIYCTAATAELVPLMLED 94
>gi|407465689|ref|YP_006776571.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
sp. AR2]
gi|407048877|gb|AFS83629.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
sp. AR2]
Length = 646
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD-----EMFSMDFVKELKRHVHHIDAVL 59
+ + +L G LL E KIL+DCG + M + + L + +DA++
Sbjct: 189 VSLYTLGGFGQVGRSSLLLSTPESKILIDCGINPGARSPMDAFPRLDSLNITLDELDAIV 248
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ + + H G LP + K G PI+ T P M + D +V
Sbjct: 249 IGHAHLDHTGFLPTLC-KYGYKGPIYCTEPTLPMMNLIQLDAIKV 292
>gi|421353091|ref|ZP_15803429.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae HE-45]
gi|395955550|gb|EJH66146.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae HE-45]
Length = 438
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 16 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 69
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ G PI+ T ++ + + D
Sbjct: 70 LA-AGFKQPIYCTAATAELVPLMLED 94
>gi|421350124|ref|ZP_15800492.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae HE-25]
gi|395955231|gb|EJH65834.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae HE-25]
Length = 438
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 16 CHELRADGQALLIDCGLFQGVDERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 69
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ G PI+ T ++ + + D
Sbjct: 70 LA-AGFKQPIYCTAATAELVPLMLED 94
>gi|419835210|ref|ZP_14358658.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-46B1]
gi|421341810|ref|ZP_15792219.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-43B1]
gi|423733560|ref|ZP_17706788.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-41B1]
gi|424007853|ref|ZP_17750809.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-44C1]
gi|395946987|gb|EJH57645.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HC-43B1]
gi|408632210|gb|EKL04683.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-41B1]
gi|408859351|gb|EKL99012.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-46B1]
gi|408867710|gb|EKM07066.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HC-44C1]
Length = 438
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 16 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 69
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ G PI+ T ++ + + D
Sbjct: 70 LA-AGFKQPIYCTAATAELVPLMLED 94
>gi|422921507|ref|ZP_16954730.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae BJG-01]
gi|341648795|gb|EGS72829.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae BJG-01]
Length = 438
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 16 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 69
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ G PI+ T ++ + + D
Sbjct: 70 LA-AGFKQPIYCTAATAELVPLMLED 94
>gi|417819154|ref|ZP_12465773.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae HE39]
gi|423944535|ref|ZP_17733216.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HE-40]
gi|423973982|ref|ZP_17736762.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HE-46]
gi|340043044|gb|EGR04005.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae HE39]
gi|408662385|gb|EKL33328.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HE-40]
gi|408666438|gb|EKL37226.1| RNA-metabolising metallo-beta-lactamase family protein [Vibrio
cholerae HE-46]
Length = 438
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 16 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 69
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ G PI+ T ++ + + D
Sbjct: 70 LA-AGFKQPIYCTAATAELVPLMLED 94
>gi|262404993|ref|ZP_06081545.1| metallo-beta-lactamase family protein RNA-specific [Vibrio sp.
RC586]
gi|262348832|gb|EEY97973.1| metallo-beta-lactamase family protein RNA-specific [Vibrio sp.
RC586]
Length = 438
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 16 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 69
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ G PI+ T ++ + + D
Sbjct: 70 LA-AGFKQPIYCTAATAELVPLMLED 94
>gi|229512735|ref|ZP_04402203.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
TMA 21]
gi|229350245|gb|EEO15197.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
TMA 21]
Length = 446
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 24 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 77
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ G PI+ T ++ + + D
Sbjct: 78 LA-AGFKQPIYCTAATAELVPLMLED 102
>gi|229524785|ref|ZP_04414190.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
bv. albensis VL426]
gi|229338366|gb|EEO03383.1| metallo-beta-lactamase family protein RNA-specific [Vibrio cholerae
bv. albensis VL426]
Length = 438
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 16 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 69
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ G PI+ T ++ + + D
Sbjct: 70 LA-AGFKQPIYCTAATAELVPLMLED 94
>gi|254286264|ref|ZP_04961223.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|150423679|gb|EDN15621.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
Length = 438
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 16 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 69
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ G PI+ T ++ + + D
Sbjct: 70 LA-AGFKQPIYCTAATAELVPLMLED 94
>gi|121727067|ref|ZP_01680258.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|121630578|gb|EAX62968.1| conserved hypothetical protein [Vibrio cholerae V52]
Length = 459
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 37 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 90
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ G PI+ T ++ + + D
Sbjct: 91 LA-AGFKQPIYCTAATAELVPLMLED 115
>gi|194336035|ref|YP_002017829.1| beta-lactamase domain-containing protein [Pelodictyon
phaeoclathratiforme BU-1]
gi|194308512|gb|ACF43212.1| beta-lactamase domain protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 464
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 9/62 (14%)
Query: 20 CYLLQVDEFKILLDCGW------DEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPY 73
C++L+V E+ +LLDCG +E+ + + IDAV+LS+ + H G LPY
Sbjct: 16 CHILRVGEYTVLLDCGLIQGAPAEELLNKE---PFPFAPSSIDAVVLSHGHIDHSGRLPY 72
Query: 74 MV 75
+V
Sbjct: 73 LV 74
>gi|254851399|ref|ZP_05240749.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|3724326|dbj|BAA33615.1| unknown [Vibrio cholerae]
gi|254847104|gb|EET25518.1| conserved hypothetical protein [Vibrio cholerae MO10]
Length = 446
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 24 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 77
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ G PI+ T ++ + + D
Sbjct: 78 LA-AGFKQPIYCTAATAELVPLMLED 102
>gi|334321967|ref|XP_001364674.2| PREDICTED: integrator complex subunit 11-like [Monodelphis
domestica]
Length = 600
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 15 DESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDAVLLSYPDVAH 67
D C L+ + ++LDCG ++ D ++ + R +D V++S+ + H
Sbjct: 14 DVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDH 73
Query: 68 LGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
GALPY G PI+ T P + + + D ++ D
Sbjct: 74 CGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVD 113
>gi|347758757|ref|YP_004866319.1| metallo-beta-lactamase superfamily protein [Micavibrio
aeruginosavorus ARL-13]
gi|347591275|gb|AEP10317.1| metallo-beta-lactamase superfamily protein [Micavibrio
aeruginosavorus ARL-13]
Length = 455
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFVKELKRHVHHIDAVLL 60
+K+T L T + YLL+ K L+DCG E+ S ++ L + IDAV+L
Sbjct: 1 MKLTFLGATETVTGSKYLLEHGGKKYLIDCGLFQGSKELRSRNW-DGLPVAPNAIDAVIL 59
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
++ + H G +P +V K G PI+ T + + ++ + D ++ D
Sbjct: 60 THAHIDHSGYIPKLV-KAGFRGPIYCTDATFDLCKILLPDSGHLQED 105
>gi|352516503|ref|YP_004885820.1| ribonuclease J [Tetragenococcus halophilus NBRC 12172]
gi|348600610|dbj|BAK93656.1| ribonuclease J [Tetragenococcus halophilus NBRC 12172]
Length = 561
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
I++ LSG Y+ +V E +LDCG D +F +D V L+ + +
Sbjct: 4 IRIIPLSGVRGNGKNLYIAEVGEDIFVLDCGLSYPEDGLFGIDTVIPDFTYLEENADRVA 63
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQM 96
V +++ +GALPY + K + P+F T ++ +M
Sbjct: 64 GVFVTHGHADAIGALPYFLEK--IDAPVFGTKLTIELAKM 101
>gi|390940642|ref|YP_006404379.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Sulfurospirillum barnesii SES-3]
gi|390193749|gb|AFL68804.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Sulfurospirillum barnesii SES-3]
Length = 465
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 6 KMTSLSGTMDESPPCYLLQVDEFKILLDCGW--DEMFSMDFVKELKRHVHHIDAVLLSYP 63
K+TS G + C+L+++ KIL+DCG E++ D + ID +LL++
Sbjct: 3 KVTSYGGASMVTGSCHLVEIHSIKILIDCGMIQGELWH-DNYQPFGFDASQIDYLLLTHA 61
Query: 64 DVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD---LFQVRYDTFLK 111
H+G +P +V K G I AT + + + D L Y++ L+
Sbjct: 62 HADHIGRVPKLV-KEGFRGEIIATEASLDIAYIMLLDSAALLMEEYESQLR 111
>gi|302348117|ref|YP_003815755.1| exonuclease [Acidilobus saccharovorans 345-15]
gi|302328529|gb|ADL18724.1| Putative exonuclease [Acidilobus saccharovorans 345-15]
Length = 674
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDE------MFSMDFVKELKRHVHHIDAV 58
+++T L + C L+ E KILLD G+ + + M EL+ + +DAV
Sbjct: 195 VRITGLGSFGEVGRSCILIDTSESKILLDVGFAQSGFGPDAYPMFDAPELR--LDELDAV 252
Query: 59 LLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
++S+ + H+G P M+ K G PI+ T + + + D +
Sbjct: 253 VISHAHMDHVGLAP-MLYKYGYRGPIYMTPATRDIATLMLQDFINL 297
>gi|299144214|ref|ZP_07037294.1| metallo-beta-lactamase family protein [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298518699|gb|EFI42438.1| metallo-beta-lactamase family protein [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 554
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHID 56
+K+ L G + L++ + I++DCG DEM +D V L ++ I
Sbjct: 7 LKIIPLGGMREVGKNLTLIEYRDEIIIVDCGMTFPEDEMLGIDVVIPDVTYLIKNQEKIK 66
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
A++L++ H+GA+PY++ K L PI+ T
Sbjct: 67 ALVLTHGHEDHIGAIPYILKK--LKMPIYGT 95
>gi|283797888|ref|ZP_06347041.1| metallo-beta-lactamase family protein [Clostridium sp. M62/1]
gi|291074577|gb|EFE11941.1| metallo-beta-lactamase domain protein [Clostridium sp. M62/1]
gi|295116118|emb|CBL36965.1| Predicted exonuclease of the beta-lactamase fold involved in RNA
processing [butyrate-producing bacterium SM4/1]
Length = 535
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
+++T + + + C+ L+ IL+DCG ++ + +EL ID VL+++
Sbjct: 1 MRLTFIGADHEVTGSCHYLEACGLNILIDCGMEQGSNKYQNQELPVSYADIDYVLVTHSH 60
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
+ H+G LP++ + G S I A+ + + + D ++
Sbjct: 61 IDHVGMLPFIFAR-GFSGQIMASRATCDLCNIMLKDCAHIQ 100
>gi|49477329|ref|YP_035906.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|49328885|gb|AAT59531.1| Zn-dependent hydrolase [Bacillus thuringiensis serovar konkukian
str. 97-27]
Length = 436
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSY 62
S++++ G + CY ++ E KIL DCG + + + K + V +DAV LS+
Sbjct: 16 SMMRVEVWGGAGEYGRSCYFVKNKETKILFDCGINRSYEDSYPKIEREVVPFLDAVFLSH 75
Query: 63 PDVAHLGALPYMVGKCGLSCPIFAT 87
H LP ++ K G I+ T
Sbjct: 76 IHEDHTMGLP-LLAKYGYKKKIWTT 99
>gi|49184627|ref|YP_027879.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
Sterne]
gi|49178554|gb|AAT53930.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
Sterne]
Length = 436
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSY 62
S++++ G + CY ++ E KIL DCG + + + K + V +DAV LS+
Sbjct: 16 SMMRVEVWGGAGEYGRSCYFVKNKETKILFDCGINRSYEDSYPKIEREVVPFLDAVFLSH 75
Query: 63 PDVAHLGALPYMVGKCGLSCPIFAT 87
H LP ++ K G I+ T
Sbjct: 76 IHEDHTMGLP-LLAKYGYKKKIWTT 99
>gi|52143669|ref|YP_083159.1| zinc-dependent hydrolase [Bacillus cereus E33L]
gi|51977138|gb|AAU18688.1| Zn-dependent hydrolase (beta-lactamase superfamily) [Bacillus
cereus E33L]
Length = 436
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSY 62
S++++ G + CY ++ E KIL DCG + + + K + V +DAV LS+
Sbjct: 16 SMMRVEVWGGAGEYGRSCYFVKNKETKILFDCGINRSYEDSYPKIEREVVPFLDAVFLSH 75
Query: 63 PDVAHLGALPYMVGKCGLSCPIFAT 87
H LP ++ K G I+ T
Sbjct: 76 IHEDHTMGLP-LLAKYGYKKKIWTT 99
>gi|406925991|gb|EKD62332.1| hypothetical protein ACD_52C00216G0001, partial [uncultured
bacterium]
Length = 152
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 14/106 (13%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD----EMFSMDFV----KELKRHVHHID 56
+K +SGT + CY+ + + I++DCG EM +D V L+++ + +
Sbjct: 4 LKFIVISGTTGVTENCYVYEWQDEMIVVDCGVGFPDPEMLGVDLVIPDFTYLRKNKNKLK 63
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLF 102
+L+S+ HLG+LP++ + PI++T K+ F+ D F
Sbjct: 64 GILISHGHEDHLGSLPFLFKD--VEVPIYST----KLVAGFIEDKF 103
>gi|423552475|ref|ZP_17528802.1| hypothetical protein IGW_03106 [Bacillus cereus ISP3191]
gi|401186417|gb|EJQ93505.1| hypothetical protein IGW_03106 [Bacillus cereus ISP3191]
Length = 436
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSY 62
S++++ G + CY ++ E KIL DCG + + + K + V +DAV LS+
Sbjct: 16 SMMRVEVWGGAGEYGRSCYFVKNKETKILFDCGINRSYEDSYPKIEREVVPFLDAVFLSH 75
Query: 63 PDVAHLGALPYMVGKCGLSCPIFAT 87
H LP ++ K G I+ T
Sbjct: 76 IHEDHTMGLP-LLAKYGYKKKIWTT 99
>gi|386875398|ref|ZP_10117572.1| KH/beta-lactamase domain protein [Candidatus Nitrosopumilus salaria
BD31]
gi|386806797|gb|EIJ66242.1| KH/beta-lactamase domain protein [Candidatus Nitrosopumilus salaria
BD31]
Length = 646
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD-----EMFSMDFVKELKRHVHHIDAVL 59
+ + +L G LL E KIL+DCG + M + + L + +DA++
Sbjct: 189 VSLYTLGGFGQVGRSSLLLSTPESKILIDCGINPGARSPMDAFPRLDSLNITLDELDAIV 248
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ + + H G LP + K G PI+ T P M + D +V
Sbjct: 249 IGHAHLDHTGFLPALC-KYGYKGPIYCTEPTLPMMNLIQLDAIKV 292
>gi|118477221|ref|YP_894372.1| Zn-dependent hydrolase [Bacillus thuringiensis str. Al Hakam]
gi|118416446|gb|ABK84865.1| Zn-dependent hydrolase [Bacillus thuringiensis str. Al Hakam]
Length = 436
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSY 62
S++++ G + CY ++ E KIL DCG + + + K + V +DAV LS+
Sbjct: 16 SMMRVEVWGGAGEYGRSCYFVKNKETKILFDCGINRSYEDSYPKIEREVVPFLDAVFLSH 75
Query: 63 PDVAHLGALPYMVGKCGLSCPIFAT 87
H LP ++ K G I+ T
Sbjct: 76 IHEDHTMGLP-LLAKYGYKKKIWTT 99
>gi|423576490|ref|ZP_17552609.1| hypothetical protein II9_03711 [Bacillus cereus MSX-D12]
gi|401207486|gb|EJR14265.1| hypothetical protein II9_03711 [Bacillus cereus MSX-D12]
Length = 436
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSY 62
S++++ G + CY ++ E KIL DCG + + + K + V +DAV LS+
Sbjct: 16 SMMRVEVWGGAGEYGRSCYFVKNKETKILFDCGINRSYKDSYPKIEREVVPFLDAVFLSH 75
Query: 63 PDVAHLGALPYMVGKCGLSCPIFAT 87
H LP ++ K G I+ T
Sbjct: 76 IHEDHTMGLP-LLAKYGYKKKIWTT 99
>gi|423353724|ref|ZP_17331350.1| hypothetical protein IAU_01799 [Bacillus cereus IS075]
gi|423371769|ref|ZP_17349109.1| hypothetical protein IC5_00825 [Bacillus cereus AND1407]
gi|423569290|ref|ZP_17545536.1| hypothetical protein II7_02512 [Bacillus cereus MSX-A12]
gi|401088629|gb|EJP96812.1| hypothetical protein IAU_01799 [Bacillus cereus IS075]
gi|401100853|gb|EJQ08846.1| hypothetical protein IC5_00825 [Bacillus cereus AND1407]
gi|401206900|gb|EJR13682.1| hypothetical protein II7_02512 [Bacillus cereus MSX-A12]
Length = 436
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSY 62
S++++ G + CY ++ E KIL DCG + + + K + V +DAV LS+
Sbjct: 16 SMMRVEVWGGAGEYGRSCYFVKNKETKILFDCGINRSYKDSYPKIEREVVPFLDAVFLSH 75
Query: 63 PDVAHLGALPYMVGKCGLSCPIFAT 87
H LP ++ K G I+ T
Sbjct: 76 IHEDHTMGLP-LLAKYGYKKKIWTT 99
>gi|297814408|ref|XP_002875087.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata]
gi|297320925|gb|EFH51346.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata]
Length = 819
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 20 CYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDAVLLSYPDVAHLGALP 72
C ++ ++ +I+ DCG D DF V + + I +++++ + H+GALP
Sbjct: 18 CVVVTINGKRIMFDCGMHMGCDDHNRYPDFSLVSKSGDFDNAISCIIITHFHMDHVGALP 77
Query: 73 YMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
Y CG + PI+ + P + + + D +V D
Sbjct: 78 YFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVD 112
>gi|229103002|ref|ZP_04233691.1| Metal-dependent hydrolase [Bacillus cereus Rock3-28]
gi|228680417|gb|EEL34605.1| Metal-dependent hydrolase [Bacillus cereus Rock3-28]
Length = 217
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 22 LLQVDEFKILLDCGWDEMFSMDFVKELKR---HVHHIDAVLLSYPDVAHLGALPYMVGKC 78
LL DE +L+D G+ D E++R + AV+L++ D+ H+G+LP ++ C
Sbjct: 23 LLWNDEMAVLIDTGFPRQIE-DIQVEMERVDVSFDKLKAVILTHQDIDHIGSLPELLQNC 81
Query: 79 GLSCPIFA 86
G + ++A
Sbjct: 82 GSNIKVYA 89
>gi|407463310|ref|YP_006774627.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046932|gb|AFS81685.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
koreensis AR1]
Length = 646
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD-----EMFSMDFVKELKRHVHHIDAVL 59
+ + +L G LL E KIL+DCG + M + + L + +DAV+
Sbjct: 189 VSLFTLGGFGQVGRSSLLLSTPESKILIDCGINPGARSPMDAFPRLDSLNITLDDLDAVV 248
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ + + H G LP + K G PI+ T P M + D +V
Sbjct: 249 IGHAHLDHTGFLPTLC-KYGYKGPIYCTEPTLPMMNLIQLDAIKV 292
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.329 0.143 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,728,551,176
Number of Sequences: 23463169
Number of extensions: 62594958
Number of successful extensions: 186995
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 1616
Number of HSP's that attempted gapping in prelim test: 185304
Number of HSP's gapped (non-prelim): 2228
length of query: 119
length of database: 8,064,228,071
effective HSP length: 86
effective length of query: 33
effective length of database: 6,046,395,537
effective search space: 199531052721
effective search space used: 199531052721
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 69 (31.2 bits)