BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17634
(119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V3D6|CPSF2_DROME Probable cleavage and polyadenylation specificity factor subunit 2
OS=Drosophila melanogaster GN=Cpsf100 PE=1 SV=1
Length = 756
Score = 181 bits (459), Expect = 1e-45, Method: Composition-based stats.
Identities = 75/107 (70%), Positives = 93/107 (86%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQ+D+ +ILLDCGWDE F +F+KELKR VH +DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLGALPY+VGK GL+CPI+ATIPV+KMGQMFMYDL+ ++
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFN 107
>sp|Q9P2I0|CPSF2_HUMAN Cleavage and polyadenylation specificity factor subunit 2 OS=Homo
sapiens GN=CPSF2 PE=1 SV=2
Length = 782
Score = 175 bits (444), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>sp|Q10568|CPSF2_BOVIN Cleavage and polyadenylation specificity factor subunit 2 OS=Bos
taurus GN=CPSF2 PE=1 SV=1
Length = 782
Score = 175 bits (444), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>sp|O35218|CPSF2_MOUSE Cleavage and polyadenylation specificity factor subunit 2 OS=Mus
musculus GN=Cpsf2 PE=1 SV=1
Length = 782
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 80/117 (68%), Positives = 96/117 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FS+D + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
S+PD HLGALP+ VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T L TL+
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLD 117
>sp|Q9W799|CPSF2_XENLA Cleavage and polyadenylation specificity factor subunit 2
OS=Xenopus laevis GN=cpsf2 PE=1 SV=1
Length = 783
Score = 169 bits (428), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 76/108 (70%), Positives = 91/108 (84%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+L G +ES CYLLQVDEF+ LLDCGWDE FSMD + +K++VH +DAVLL
Sbjct: 1 MTSIIKLTTLVGAQEESAVCYLLQVDEFRFLLDCGWDENFSMDIIDSVKKYVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDT 108
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNT 108
>sp|A8XUS3|CPSF2_CAEBR Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis briggsae GN=cpsf-2 PE=3 SV=2
Length = 842
Score = 145 bits (367), Expect = 5e-35, Method: Composition-based stats.
Identities = 63/107 (58%), Positives = 78/107 (72%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ SG DE P CYLLQVD ILLDCGWDE F + + +EL+ ++ I AVL+
Sbjct: 1 MTSIIKLKVFSGAKDEGPLCYLLQVDNDYILLDCGWDERFELKYFEELRPYIPKISAVLI 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLG LPY+V KCGL+ P++ T+PVYKMGQMF+YDL D
Sbjct: 61 SHPDPLHLGGLPYLVAKCGLTAPVYCTVPVYKMGQMFIYDLVYSHLD 107
>sp|O17403|CPSF2_CAEEL Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis elegans GN=cpsf-2 PE=3 SV=1
Length = 843
Score = 145 bits (367), Expect = 5e-35, Method: Composition-based stats.
Identities = 64/107 (59%), Positives = 78/107 (72%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ SG DE P CYLLQVD ILLDCGWDE F + + +ELK + I AVL+
Sbjct: 1 MTSIIKLKVFSGAKDEGPLCYLLQVDGDYILLDCGWDERFGLQYFEELKPFIPKISAVLI 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLG LPY+V KCGL+ P++AT+PVYKMGQMF+YD+ D
Sbjct: 61 SHPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMVYSHLD 107
>sp|Q55BS1|CPSF2_DICDI Cleavage and polyadenylation specificity factor subunit 2
OS=Dictyostelium discoideum GN=cpsf2 PE=3 SV=1
Length = 784
Score = 125 bits (314), Expect = 8e-29, Method: Composition-based stats.
Identities = 57/103 (55%), Positives = 73/103 (70%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M SIIK T+LSG DESPPCYLL++D+F ILLDCG ++ L++ IDAVLL
Sbjct: 1 MASIIKFTALSGAKDESPPCYLLEIDDFCILLDCGLSYNLDFSLLEPLEKVAKKIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQ 103
S+ D H+G LPY+VGK GL+ I+ T PV KMG MF+YDL++
Sbjct: 61 SHSDTTHIGGLPYVVGKYGLTGTIYGTTPVLKMGTMFLYDLYE 103
>sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2
OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2
Length = 739
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 71/105 (67%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T L G +E+P YL+ +D F L+DCGW+++F ++ L R IDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRVASTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
S+PD H+GALPY + + GLS P++AT PV+++G + MYD F R
Sbjct: 61 SHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSR 105
>sp|Q652P4|CPSF2_ORYSJ Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza
sativa subsp. japonica GN=Os09g0569400 PE=2 SV=1
Length = 738
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 68/105 (64%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T LSG E P CYLL VD F+ LLDCGW ++ ++ L + IDAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDPSHLQPLAKVAPTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
S+ D HLGALPY + GLS P++AT PV+++G + +YD F R
Sbjct: 61 SHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTLYDYFISR 105
>sp|Q503E1|INT11_DANRE Integrator complex subunit 11 OS=Danio rerio GN=cpsf3l PE=2 SV=1
Length = 598
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
IK+T L D C L+ + I+LDCG F+ D ++ + R +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPYM G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVD 113
>sp|Q86A79|CPSF3_DICDI Cleavage and polyadenylation specificity factor subunit 3
OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1
Length = 774
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDAVL 59
I+++T + + C LL+ K++ DCG + + S+ F ++ + ID +L
Sbjct: 35 ILEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFDSIESDIPDIDLLL 94
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+S+ + H A+PY VGK +F T P + M + D +V
Sbjct: 95 VSHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKV 139
>sp|Q5NVE6|INT11_PONAB Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2
Length = 600
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>sp|Q5TA45|INT11_HUMAN Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2
Length = 600
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>sp|Q5ZIH0|INT11_CHICK Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1
Length = 600
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
IK+T L D C L+ + ++LDCG ++ D ++ + R +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVD 113
>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1
Length = 600
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG ++ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2
SV=1
Length = 600
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG ++ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>sp|Q2YDM2|INT11_BOVIN Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2
Length = 599
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG FS D + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYNTRSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVD 113
>sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog OS=Dictyostelium discoideum
GN=ints11 PE=3 SV=1
Length = 744
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWD-------EMFSMDFVKELKRHVHHIDA 57
IK+ L D C ++ + I+ DCG ++ + + ID
Sbjct: 3 IKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVIDC 62
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
V++++ + H GALP+ CG PI+ T+P + + + D
Sbjct: 63 VIITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLED 105
>sp|O74740|CFT2_SCHPO Cleavage factor two protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cft2 PE=1 SV=1
Length = 797
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 23 LQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL-S 81
+++D I +D G D+ V E D +LLS+ D+AH+G L Y K +
Sbjct: 18 IELDGIHIYIDPGSDDSLKHPEVPE------QPDLILLSHSDLAHIGGLVYAYYKYDWKN 71
Query: 82 CPIFATIPVYKMGQMFMYDLFQVRY 106
I+AT+P MG+M M D + Y
Sbjct: 72 AYIYATLPTINMGRMTMLDAIKSNY 96
>sp|Q06224|YSH1_YEAST Endoribonuclease YSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YSH1 PE=1 SV=1
Length = 779
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDA 57
T+ K SL G+ + C++LQ ++LD G + + S+ F E + +D
Sbjct: 6 TTTFKFFSLGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFD--LSKVDI 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+L+S+ + H +LPY++ + +F T P + + + D +V
Sbjct: 64 LLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRV 110
>sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II
OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2
Length = 613
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCG-------WDEMFSMDFVKELKRHVHHIDAVLLSY 62
L + C ++ ++ KI+ DCG + + + + + I +++++
Sbjct: 8 LGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITH 67
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
+ H+GALPY CG + PI+ + P + + + D +V D
Sbjct: 68 FHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVD 112
>sp|Q6FUA5|YSH1_CANGA Endoribonuclease YSH1 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YSH1 PE=3
SV=1
Length = 771
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 9 SLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDAVLLSYPD 64
SL G + C+++Q I+LD G + M S+ F + + +D +L+S+
Sbjct: 14 SLGGGNEVGRSCHIIQFKGKTIMLDAGIHPAYQGMASLPFYDDFDLSI--VDVLLISHFH 71
Query: 65 VAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ H +LPY++ K +F T P + + + D +V
Sbjct: 72 LDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLRDFVRV 111
>sp|Q58633|Y1236_METJA Uncharacterized protein MJ1236 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1236 PE=4 SV=1
Length = 634
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRHVHHIDAVL 59
I+++ L G + C +Q + ++L+DCG D+ F E + +DAV+
Sbjct: 180 IRVSFLGGAREVGRSCLYVQTPDTRVLIDCGINVACEDKAFPHFDAPEFS--IEDLDAVI 237
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+++ + H G +P + + G P++ T P + + D ++
Sbjct: 238 VTHAHLDHCGFIPGLF-RYGYDGPVYCTRPTRDLMTLLQKDYLEI 281
>sp|Q60355|Y047_METJA Uncharacterized protein MJ0047 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0047 PE=3 SV=2
Length = 428
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79
C ++ D+ KILLDCG +++ L + +D V +S+ + H GALP + +
Sbjct: 16 CIEIKTDKSKILLDCGVKLGKEIEY-PILDNSIRDVDKVFISHAHLDHSGALPVLFHR-K 73
Query: 80 LSCPIFATIPVYKMGQMFMYDLFQV 104
+ P+ T K+ ++ + D+ ++
Sbjct: 74 MDVPVITTELSKKLIKVLLKDMVKI 98
>sp|Q5SLP1|RNSE_THET8 Ribonuclease TTHA0252 OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=TTHA0252 PE=1 SV=1
Length = 431
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKRHV------HHIDAVLLSYPDVAHLGALPYM 74
+LL ++LLDCG MF +E + H +DAVLL++ + H+G LP +
Sbjct: 17 HLLLAGGRRVLLDCG---MFQGK--EEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKL 71
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFL 110
+ G P++AT + ++ + D +V + F
Sbjct: 72 F-REGYRGPVYATRATVLLMEIVLEDALKVMDEPFF 106
>sp|Q6CUI5|YSH1_KLULA Endoribonuclease YSH1 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=YSH1 PE=3 SV=1
Length = 764
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDAVLL 60
++ SL G+ + C++LQ ++LD G + S+ + E + ID +L+
Sbjct: 14 LRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFD--LSTIDLLLI 71
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
S+ + H +LPY++ + +F T P + + + D +V
Sbjct: 72 SHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKV 115
>sp|Q4R5Z4|INT9_MACFA Integrator complex subunit 9 OS=Macaca fascicularis GN=INTS9 PE=2
SV=1
Length = 637
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 24/109 (22%)
Query: 19 PCYLLQVDEFKILLDCGWDEMFSMDFV------------------KELKRHVHHIDAVLL 60
PC +L+ I+LDCG D +++F+ K+ + + + L
Sbjct: 13 PCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSSLPGWSLKDGNAFLDKTELIDL 72
Query: 61 SYPDVAHLG------ALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQ 103
S DV + ALPY+ G + ++AT P ++G++ M +L
Sbjct: 73 STVDVILISNYHCMMALPYITEHTGFTGTVYATEPTVQIGRLLMEELVN 121
>sp|Q74ZC0|YSH1_ASHGO Endoribonuclease YSH1 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=YSH1 PE=3 SV=2
Length = 771
Score = 35.8 bits (81), Expect = 0.073, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDA 57
T+ + L G+ + C++LQ ++LD G + S+ F E + ++
Sbjct: 8 TNSFRFFGLGGSNEVGRSCHILQYKGKTVMLDAGVHPAHQGIASLPFYDEFD--LSQVEV 65
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+L+S+ + H +LPY++ + +F T P + + + D +V
Sbjct: 66 LLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKV 112
>sp|P97564|GPAT1_RAT Glycerol-3-phosphate acyltransferase 1, mitochondrial OS=Rattus
norvegicus GN=Gpam PE=1 SV=3
Length = 828
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 48 LKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
L H HID +LL++ H PY+ L+ PIF+T+ ++K+G F+
Sbjct: 227 LPVHRSHIDYLLLTFILFCHNIKAPYIASGNNLNIPIFSTL-IHKLGGFFI 276
>sp|Q5GJ77|GPAT1_BOVIN Glycerol-3-phosphate acyltransferase 1, mitochondrial OS=Bos taurus
GN=GPAM PE=2 SV=1
Length = 825
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 48 LKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
L H HID +LL++ H PY+ L+ PIF+T+ ++K+G F+
Sbjct: 227 LPVHRSHIDYLLLTFILFCHNIKAPYIASGNNLNIPIFSTL-IHKLGGFFI 276
>sp|Q9HCL2|GPAT1_HUMAN Glycerol-3-phosphate acyltransferase 1, mitochondrial OS=Homo
sapiens GN=GPAM PE=1 SV=3
Length = 828
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 48 LKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
L H HID +LL++ H PY+ L+ PIF+T+ ++K+G F+
Sbjct: 227 LPVHRSHIDYLLLTFILFCHNIKAPYIASGNNLNIPIFSTL-IHKLGGFFI 276
>sp|Q61586|GPAT1_MOUSE Glycerol-3-phosphate acyltransferase 1, mitochondrial OS=Mus
musculus GN=Gpam PE=1 SV=2
Length = 827
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 48 LKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFM 98
L H HID +LL++ H PY+ L+ P+F+T+ ++K+G F+
Sbjct: 227 LPVHRSHIDYLLLTFILFCHNIKAPYIASGNNLNIPVFSTL-IHKLGGFFI 276
>sp|P79101|CPSF3_BOVIN Cleavage and polyadenylation specificity factor subunit 3 OS=Bos
taurus GN=CPSF3 PE=2 SV=1
Length = 684
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 20 CYLLQVDEFKILLDCG-------WDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALP 72
C +L+ KI+LDCG D + +D + + ID +L+S+ + H GALP
Sbjct: 27 CIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----IDLLLISHFHLDHCGALP 81
Query: 73 YMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ + K F T + + + D +V
Sbjct: 82 WFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV 113
>sp|Q2KJA6|INT9_BOVIN Integrator complex subunit 9 OS=Bos taurus GN=INTS9 PE=2 SV=1
Length = 658
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 45/130 (34%)
Query: 19 PCYLLQVDEFKILLDCGWDEMFSMDFV--------------------------KELKRHV 52
PC +L+ I+LDCG D +++F+ KELK
Sbjct: 13 PCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSLKDGNAFLDKELKECS 72
Query: 53 HHI-------------DAVLLSYPDVAHLG------ALPYMVGKCGLSCPIFATIPVYKM 93
H+ + + LS DV + ALPY+ G + ++AT P ++
Sbjct: 73 GHVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITEHTGFTGTVYATEPTVQI 132
Query: 94 GQMFMYDLFQ 103
G++ M +L
Sbjct: 133 GRLLMEELVN 142
>sp|Q9UKF6|CPSF3_HUMAN Cleavage and polyadenylation specificity factor subunit 3 OS=Homo
sapiens GN=CPSF3 PE=1 SV=1
Length = 684
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 20 CYLLQVDEFKILLDCG-------WDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALP 72
C +L+ KI+LDCG D + +D + + ID +L+S+ + H GALP
Sbjct: 27 CIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----IDLLLISHFHLDHCGALP 81
Query: 73 YMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ + K F T + + + D +V
Sbjct: 82 WFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV 113
>sp|Q9QXK7|CPSF3_MOUSE Cleavage and polyadenylation specificity factor subunit 3 OS=Mus
musculus GN=Cpsf3 PE=1 SV=2
Length = 684
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 20 CYLLQVDEFKILLDCG-------WDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALP 72
C +L+ KI+LDCG D + +D + + ID +L+S+ + H GALP
Sbjct: 27 CIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----IDLLLISHFHLDHCGALP 81
Query: 73 YMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+ + K F T + + + D +V
Sbjct: 82 WFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV 113
>sp|Q8K114|INT9_MOUSE Integrator complex subunit 9 OS=Mus musculus GN=Ints9 PE=2 SV=1
Length = 658
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 45/130 (34%)
Query: 19 PCYLLQVDEFKILLDCGWDEMFSMDFV--------------------------KELKRHV 52
PC +L+ I+LDCG D +++F+ KELK
Sbjct: 13 PCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSLKDGNAFLDKELKECS 72
Query: 53 HHI-------------DAVLLSYPDVAHLG------ALPYMVGKCGLSCPIFATIPVYKM 93
H+ + + LS DV + ALPY+ G + ++AT P ++
Sbjct: 73 GHVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITEHTGFTGTVYATEPTMQI 132
Query: 94 GQMFMYDLFQ 103
G++ M +L
Sbjct: 133 GRLLMEELVN 142
>sp|Q9NV88|INT9_HUMAN Integrator complex subunit 9 OS=Homo sapiens GN=INTS9 PE=1 SV=2
Length = 658
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 45/130 (34%)
Query: 19 PCYLLQVDEFKILLDCGWDEMFSMDFV--------------------------KELKRHV 52
PC +L+ I+LDCG D +++F+ KELK
Sbjct: 13 PCNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSLKDGNAFLDKELKECS 72
Query: 53 HHI-------------DAVLLSYPDVAHLG------ALPYMVGKCGLSCPIFATIPVYKM 93
H+ + + LS DV + ALPY+ G + ++AT P ++
Sbjct: 73 GHVFVDSVPEFCLPETELIDLSTVDVILISNYHCMMALPYITEHTGFTGTVYATEPTVQI 132
Query: 94 GQMFMYDLFQ 103
G++ M +L
Sbjct: 133 GRLLMEELVN 142
>sp|Q12102|CFT2_YEAST Cleavage factor two protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CFT2 PE=1 SV=1
Length = 859
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 22 LLQVDEFKILLDCGWD--EMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGA---LPYMVG 76
+++ D +L+D GW+ ++ +K ++ + ID ++LS P + LGA L Y
Sbjct: 19 VVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFT 78
Query: 77 KCGLS-CPIFATIPVYKMGQMFMYDLF 102
+S ++AT+PV +G++ D +
Sbjct: 79 SHFISRIQVYATLPVINLGRVSTIDSY 105
>sp|Q6DFF4|INT9_XENLA Integrator complex subunit 9 OS=Xenopus laevis GN=ints9 PE=2 SV=1
Length = 658
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 49/130 (37%)
Query: 19 PCYLLQVDEFKILLDCGWDEMFSMDFV--------------------------KELKR-- 50
PC +L+ I+LDCG D ++ F+ KELK
Sbjct: 13 PCNILKFKSSTIMLDCGLDMTSTLSFLPLPLVHSTRLSKLPGWVTKDGNNQFEKELKECS 72
Query: 51 -------------------HVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVY 91
+ +D +L+S + + ALPY+ + G + ++AT P
Sbjct: 73 GRVFVDSVPEFCLPETELIDLSTVDVILIS--NYHCMMALPYITERTGFTGTVYATEPTV 130
Query: 92 KMGQMFMYDL 101
++G++ M +L
Sbjct: 131 QIGRLLMEEL 140
>sp|Q8TWK0|RNZ_METKA Ribonuclease Z OS=Methanopyrus kandleri (strain AV19 / DSM 6324 /
JCM 9639 / NBRC 100938) GN=rnz PE=3 SV=1
Length = 279
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 13 TMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGAL 71
+ D S P L++ K+L+DCG + E +H +DAVLL++ V H+ L
Sbjct: 18 SKDRSHPGLLVEFSGTKLLIDCGEG---TQRRAMEQGVTIHDVDAVLLTHHHVDHVAGL 73
>sp|Q57626|Y162_METJA Uncharacterized protein MJ0162 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=MJ0162 PE=3 SV=1
Length = 421
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPY 73
C ++ + ++LLDCG S D + K +DAV++S+ + H GA+P+
Sbjct: 17 CVEVETQKGRVLLDCG----MSPDTGEIPKVDDKAVDAVIVSHAHLDHCGAIPF 66
>sp|A7SBF0|INT9_NEMVE Integrator complex subunit 9 homolog OS=Nematostella vectensis
GN=ints9 PE=3 SV=1
Length = 660
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDL 101
+D +L+S + H+ ALP++ G + I+AT P ++G+ M +L
Sbjct: 100 VDVILIS--NYHHMLALPFITEYSGFNGKIYATEPTIQIGRDLMLEL 144
>sp|P54122|RNJ_CORGL Ribonuclease J OS=Corynebacterium glutamicum (strain ATCC 13032 /
DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=Cgl1970 PE=3 SV=2
Length = 718
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 48 LKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
++ H+H +DA+++++ H+GA+P+++ K PI A+
Sbjct: 206 IEDHLHRVDALVVTHGHEDHIGAIPWLL-KLRNDIPILAS 244
>sp|Q4L5X8|RNJ2_STAHJ Ribonuclease J 2 OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=SH1638 PE=3 SV=1
Length = 557
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW----DEMFSMDFVKELKRHV----HHID 56
I++ L G + + Y+++VD+ +LD G DEM +D V ++V +
Sbjct: 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLMFPEDEMLGVDIVIPDIQYVIENKEKLK 70
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFAT 87
+ LS+ +GA+ Y++ + + P++ +
Sbjct: 71 GIFLSHGHEHAIGAVSYILEQ--IDAPVYGS 99
>sp|Q6BMW3|YSH1_DEBHA Endoribonuclease YSH1 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YSH1 PE=3
SV=2
Length = 815
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDC----GWDEMFSMDFVKELKRHVHHIDA 57
T K L G + C++++ I+LD G + S+ F E + +D
Sbjct: 11 TDDFKFFGLGGCNEVGRSCHIIEYKNKVIMLDAGVHPGLQGLSSLPFYDEYD--LSKVDI 68
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+L+S+ + H +LPY++ + +F T + + + D +V
Sbjct: 69 LLVSHFHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRWLLSDFVKV 115
>sp|A8YV39|CCA_LACH4 CCA-adding enzyme OS=Lactobacillus helveticus (strain DPC 4571)
GN=cca PE=3 SV=1
Length = 399
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 14 MDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKEL--KRHVHHIDAVLLSYPD 64
+D+ P ++ + + L D G++ F V++L RHVH +D +YP+
Sbjct: 4 VDKLPDVFIKAMPVLQTLEDAGFEAYFVGGSVRDLLLDRHVHDVDITTSAYPE 56
>sp|A6TCX5|NORV_KLEP7 Anaerobic nitric oxide reductase flavorubredoxin OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=norV PE=3 SV=1
Length = 482
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKRHVH--HIDAVLLSYPDVAHLGALPYMVGKC 78
YL++ +E +L+D D FS +FV+ L+R + +D +++++ + H GAL ++ +
Sbjct: 38 YLIR-EEKNVLIDT-VDHKFSREFVQNLRREIDLADLDYIVINHAEEDHAGALTELMMQI 95
Query: 79 GLSCPIFAT 87
PI+ T
Sbjct: 96 P-DTPIYCT 103
>sp|O14332|REM1_SCHPO Meiosis-specific cyclin rem1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rem1 PE=3 SV=1
Length = 402
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 37 DEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMV 75
DE S+++ KE+ H+ ++ + PD H+ A PY V
Sbjct: 135 DESVSVEYAKEILSHMEKLEIRFM--PDYRHMSAQPYYV 171
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.143 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,431,924
Number of Sequences: 539616
Number of extensions: 1515221
Number of successful extensions: 5343
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 5295
Number of HSP's gapped (non-prelim): 62
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)