Query psy17634
Match_columns 119
No_of_seqs 122 out of 1228
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 19:03:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1782 Predicted metal-depend 99.8 1.2E-20 2.6E-25 142.5 8.4 102 3-105 179-284 (637)
2 TIGR03675 arCOG00543 arCOG0054 99.8 6.4E-20 1.4E-24 144.4 9.2 99 4-103 174-276 (630)
3 KOG1135|consensus 99.8 2E-19 4.4E-24 139.3 9.4 113 5-117 2-114 (764)
4 TIGR00649 MG423 conserved hypo 99.8 1E-17 2.2E-22 126.9 11.0 93 5-98 1-101 (422)
5 KOG1136|consensus 99.7 7.9E-17 1.7E-21 117.4 7.5 103 3-105 2-111 (501)
6 COG0595 mRNA degradation ribon 99.7 2.9E-16 6.2E-21 121.8 9.8 96 4-100 8-111 (555)
7 PRK00055 ribonuclease Z; Revie 99.6 5.3E-16 1.2E-20 110.5 7.8 90 5-97 2-101 (270)
8 COG1236 YSH1 Predicted exonucl 99.6 1.8E-15 4E-20 114.9 9.4 99 5-105 1-99 (427)
9 COG1237 Metal-dependent hydrol 99.6 2.4E-15 5.3E-20 106.1 7.2 75 18-92 22-96 (259)
10 TIGR02651 RNase_Z ribonuclease 99.6 1.2E-14 2.6E-19 105.4 7.0 89 6-97 1-99 (299)
11 PF00753 Lactamase_B: Metallo- 99.5 1.1E-14 2.4E-19 97.2 5.8 71 17-89 5-76 (194)
12 PRK05184 pyrroloquinoline quin 99.5 5.7E-14 1.2E-18 102.6 7.6 74 18-96 39-120 (302)
13 smart00849 Lactamase_B Metallo 99.5 7.6E-14 1.7E-18 93.3 7.3 74 16-95 4-80 (183)
14 KOG1137|consensus 99.5 1.5E-14 3.3E-19 110.5 3.8 109 4-114 13-125 (668)
15 PRK02113 putative hydrolase; P 99.5 4.2E-13 9.2E-18 95.3 10.4 73 19-96 36-109 (252)
16 TIGR02649 true_RNase_BN ribonu 99.5 1.5E-13 3.2E-18 100.2 7.7 88 7-97 1-102 (303)
17 PRK11244 phnP carbon-phosphoru 99.5 3.8E-13 8.3E-18 95.6 9.2 67 18-91 37-103 (250)
18 COG1234 ElaC Metal-dependent h 99.4 8E-13 1.7E-17 96.2 9.2 90 5-97 2-101 (292)
19 PRK02126 ribonuclease Z; Provi 99.4 1.7E-12 3.7E-17 96.0 10.7 90 1-99 1-95 (334)
20 TIGR02108 PQQ_syn_pqqB coenzym 99.4 1.9E-13 4E-18 99.9 5.5 73 18-95 38-118 (302)
21 PRK00685 metal-dependent hydro 99.4 7E-13 1.5E-17 92.6 7.9 79 5-95 1-79 (228)
22 PLN02469 hydroxyacylglutathion 99.4 1.1E-12 2.3E-17 94.0 8.6 78 5-90 1-81 (258)
23 PRK11921 metallo-beta-lactamas 99.4 7.5E-13 1.6E-17 99.7 7.5 78 15-95 30-109 (394)
24 PRK04286 hypothetical protein; 99.4 2.9E-13 6.3E-18 98.7 4.7 70 5-74 1-85 (298)
25 TIGR03413 GSH_gloB hydroxyacyl 99.4 1.6E-12 3.5E-17 92.5 6.8 67 18-90 10-77 (248)
26 PRK05452 anaerobic nitric oxid 99.4 1.8E-12 3.9E-17 99.9 7.6 78 15-95 32-111 (479)
27 PRK10241 hydroxyacylglutathion 99.4 2.5E-12 5.3E-17 91.8 7.6 79 5-90 1-80 (251)
28 PLN02398 hydroxyacylglutathion 99.4 4.9E-12 1.1E-16 93.2 8.9 81 4-92 75-157 (329)
29 TIGR03307 PhnP phosphonate met 99.3 1E-11 2.2E-16 87.6 7.1 68 18-92 27-94 (238)
30 PLN02962 hydroxyacylglutathion 99.3 2E-11 4.4E-16 87.1 8.4 81 5-89 11-95 (251)
31 COG0426 FpaA Uncharacterized f 99.2 3.2E-11 7E-16 90.0 6.7 98 14-114 32-133 (388)
32 PRK11539 ComEC family competen 99.1 2.5E-10 5.4E-15 92.3 9.3 81 4-88 500-584 (755)
33 TIGR00361 ComEC_Rec2 DNA inter 99.1 3.6E-10 7.8E-15 90.2 9.5 81 5-89 440-524 (662)
34 COG0491 GloB Zn-dependent hydr 99.1 4.7E-10 1E-14 78.1 8.8 73 18-91 25-98 (252)
35 PF12706 Lactamase_B_2: Beta-l 99.0 4.1E-10 8.8E-15 76.3 4.4 66 29-95 2-71 (194)
36 COG1235 PhnP Metal-dependent h 98.9 1.9E-09 4.2E-14 77.5 4.8 57 28-91 41-97 (269)
37 KOG0813|consensus 98.9 7.4E-09 1.6E-13 74.0 6.4 70 18-88 13-85 (265)
38 COG2333 ComEC Predicted hydrol 98.8 2.3E-08 4.9E-13 72.8 8.1 60 18-78 54-114 (293)
39 PF13483 Lactamase_B_3: Beta-l 98.7 6.2E-08 1.3E-12 64.6 6.2 52 6-70 1-52 (163)
40 COG2220 Predicted Zn-dependent 98.6 1.4E-07 3.1E-12 67.3 7.6 82 3-91 5-88 (258)
41 TIGR02650 RNase_Z_T_toga ribon 98.6 6E-08 1.3E-12 70.0 5.6 70 20-95 11-87 (277)
42 PRK11709 putative L-ascorbate 98.6 1.2E-07 2.5E-12 70.9 7.2 84 4-93 37-150 (355)
43 KOG2121|consensus 98.3 1.9E-07 4.2E-12 74.1 1.3 75 4-78 442-525 (746)
44 COG2015 Alkyl sulfatase and re 98.1 2.5E-06 5.3E-11 65.6 3.9 72 18-89 126-202 (655)
45 COG2248 Predicted hydrolase (m 98.1 3.1E-06 6.7E-11 60.3 3.4 66 5-70 1-81 (304)
46 PF02112 PDEase_II: cAMP phosp 98.1 8.4E-06 1.8E-10 60.5 5.9 89 7-95 3-124 (335)
47 PF13691 Lactamase_B_4: tRNase 97.7 0.00018 3.8E-09 40.9 5.3 50 18-70 12-63 (63)
48 KOG0814|consensus 97.5 0.00012 2.5E-09 49.9 3.1 62 18-83 21-85 (237)
49 KOG1138|consensus 97.0 0.0021 4.6E-08 50.0 5.8 50 51-102 93-142 (653)
50 PF14597 Lactamase_B_5: Metall 97.0 0.0028 6.1E-08 43.3 5.8 72 14-93 19-90 (199)
51 COG5212 PDE1 Low-affinity cAMP 97.0 0.00045 9.7E-09 50.1 2.0 45 52-96 110-156 (356)
52 KOG3592|consensus 97.0 0.001 2.2E-08 53.6 4.0 56 18-76 48-103 (934)
53 KOG1137|consensus 96.9 0.0078 1.7E-07 47.4 8.0 109 4-114 150-271 (668)
54 KOG4736|consensus 96.1 0.0059 1.3E-07 44.5 2.9 53 17-75 94-146 (302)
55 KOG1361|consensus 92.7 0.052 1.1E-06 42.3 1.1 44 52-99 110-153 (481)
56 PF14234 DUF4336: Domain of un 89.5 1.8 3.9E-05 31.8 6.3 75 15-90 17-92 (285)
57 KOG3798|consensus 81.3 1.8 3.8E-05 31.6 2.9 56 17-72 87-150 (343)
58 PF06415 iPGM_N: BPG-independe 44.9 12 0.00027 26.5 1.2 24 62-87 42-66 (223)
59 COG1107 Archaea-specific RecJ- 40.4 39 0.00084 27.7 3.4 38 29-69 421-458 (715)
60 KOG1251|consensus 37.6 47 0.001 24.4 3.2 41 51-91 170-210 (323)
61 COG4565 CitB Response regulato 36.4 76 0.0016 22.6 4.0 38 26-63 46-83 (224)
62 COG0075 Serine-pyruvate aminot 33.1 1E+02 0.0022 23.8 4.5 37 28-64 105-141 (383)
63 COG2910 Putative NADH-flavin r 27.8 2.2E+02 0.0048 20.0 5.0 36 27-63 113-155 (211)
64 COG4566 TtrR Response regulato 26.2 1.9E+02 0.004 20.3 4.4 41 27-68 49-89 (202)
65 PF00797 Acetyltransf_2: N-ace 25.5 1.1E+02 0.0024 21.3 3.4 20 20-39 90-109 (240)
66 PF00072 Response_reg: Respons 25.1 1.2E+02 0.0025 17.6 3.1 33 29-61 46-78 (112)
67 TIGR03380 agmatine_aguA agmati 24.1 92 0.002 23.7 3.0 26 17-44 156-181 (357)
68 COG0622 Predicted phosphoester 22.4 65 0.0014 21.8 1.7 10 55-64 110-119 (172)
69 PF05585 DUF1758: Putative pep 22.0 1.2E+02 0.0027 19.8 3.0 29 28-56 13-42 (164)
70 TIGR03446 mycothiol_Mca mycoth 21.2 47 0.001 24.4 0.9 18 57-74 123-146 (283)
71 PRK13551 agmatine deiminase; P 20.0 1.4E+02 0.003 22.8 3.2 46 16-63 158-204 (362)
No 1
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.83 E-value=1.2e-20 Score=142.49 Aligned_cols=102 Identities=25% Similarity=0.452 Sum_probs=86.0
Q ss_pred CcEEEEEecCCCCCCCCEEEEEeCCeEEEEecCCCCCcC-HHHHHHh---hcCCCCccEEEecCCChhhcCChHHHHhhc
Q psy17634 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS-MDFVKEL---KRHVHHIDAVLLSYPDVAHLGALPYMVGKC 78 (119)
Q Consensus 3 ~~m~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~-~~~~~~l---~~~~~~i~~illTH~H~DH~ggl~~l~~~~ 78 (119)
.+++++.+||+.++|.+|+++++++..+|+|||.+.+.. .....++ ......+|||+|||+|.||+|-+|.|. ++
T Consensus 179 ~wvRvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~Lf-kY 257 (637)
T COG1782 179 RWVRVTALGGFREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLF-KY 257 (637)
T ss_pred ceEEEEeeccchhccceeEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhh-hc
Confidence 468999999999999999999999999999999876542 1222222 224447999999999999999999999 89
Q ss_pred CCCCcEEechhhHHHHHHhhHHHHhhh
Q psy17634 79 GLSCPIFATIPVYKMGQMFMYDLFQVR 105 (119)
Q Consensus 79 ~~~~~v~~~~~~~~~~~~~~~~~~~~~ 105 (119)
+|+.|||++++|.+++-.+..|+....
T Consensus 258 gy~GPVY~T~PTRDlm~LLq~Dyi~va 284 (637)
T COG1782 258 GYDGPVYCTPPTRDLMVLLQLDYIEVA 284 (637)
T ss_pred CCCCCeeeCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999888887654
No 2
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.81 E-value=6.4e-20 Score=144.37 Aligned_cols=99 Identities=24% Similarity=0.452 Sum_probs=80.6
Q ss_pred cEEEEEecCCCCCCCCEEEEEeCCeEEEEecCCCCCcC-HHH---HHHhhcCCCCccEEEecCCChhhcCChHHHHhhcC
Q psy17634 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS-MDF---VKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79 (119)
Q Consensus 4 ~m~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~-~~~---~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~ 79 (119)
.|+++++||.+++|+||++|+.++..+|||||...... ... +........++|+||+||+|.||+|+++++. +.+
T Consensus 174 ~m~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~-k~g 252 (630)
T TIGR03675 174 WVRVTALGGFREVGRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLF-KYG 252 (630)
T ss_pred eEEEEEEecCCccCCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHH-HhC
Confidence 59999999999999999999999999999999876421 111 1112223567999999999999999999998 455
Q ss_pred CCCcEEechhhHHHHHHhhHHHHh
Q psy17634 80 LSCPIFATIPVYKMGQMFMYDLFQ 103 (119)
Q Consensus 80 ~~~~v~~~~~~~~~~~~~~~~~~~ 103 (119)
++.|||++.++.+++...+.|++.
T Consensus 253 ~~gpIY~T~pT~~l~~~ll~D~~~ 276 (630)
T TIGR03675 253 YDGPVYCTPPTRDLMTLLQLDYID 276 (630)
T ss_pred CCCceeecHHHHHHHHHHHHHHHH
Confidence 689999999999998887777654
No 3
>KOG1135|consensus
Probab=99.80 E-value=2e-19 Score=139.27 Aligned_cols=113 Identities=58% Similarity=1.018 Sum_probs=104.4
Q ss_pred EEEEEecCCCCCCCCEEEEEeCCeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCCCCcE
Q psy17634 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPI 84 (119)
Q Consensus 5 m~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v 84 (119)
++++.+.+....+.-||+++.++..|||||||+..+....++++......||+|+|||+.+-|+||+|+...+.+.++||
T Consensus 2 i~l~~~~g~~de~~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~V 81 (764)
T KOG1135|consen 2 IKLTTLCGATDEGPLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPV 81 (764)
T ss_pred eeEEeeccccCCCcceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceE
Confidence 45667767777788899999999999999999999888889999889999999999999999999999999888888999
Q ss_pred EechhhHHHHHHhhHHHHhhhhccceeeeeeee
Q psy17634 85 FATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117 (119)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (119)
|++-|+..+++.++.|.|.+..+..+|++|+++
T Consensus 82 YAT~PV~~mG~m~myD~~~S~~~~~df~l~sld 114 (764)
T KOG1135|consen 82 YATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLD 114 (764)
T ss_pred EEecchhhhhhhhHHHHHhcccccccccccchh
Confidence 999999999999999999999999999999875
No 4
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.75 E-value=1e-17 Score=126.90 Aligned_cols=93 Identities=18% Similarity=0.310 Sum_probs=74.3
Q ss_pred EEEEEecCCCCCCCCEEEEEeCCeEEEEecCCCCCcCH--------HHHHHhhcCCCCccEEEecCCChhhcCChHHHHh
Q psy17634 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSM--------DFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVG 76 (119)
Q Consensus 5 m~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~--------~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~ 76 (119)
++++++||.+++++|||+++.++..+|||||....... ..++.+.....++++||+||+|.||++|++++..
T Consensus 1 ~~i~~lGG~~eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~ 80 (422)
T TIGR00649 1 VKIFALGGLGEIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFH 80 (422)
T ss_pred CEEEEccCCCccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHH
Confidence 47899999999999999999999999999998532110 1134455556789999999999999999999986
Q ss_pred hcCCCCcEEechhhHHHHHHhh
Q psy17634 77 KCGLSCPIFATIPVYKMGQMFM 98 (119)
Q Consensus 77 ~~~~~~~v~~~~~~~~~~~~~~ 98 (119)
+++ ..|||+++.+.++++..+
T Consensus 81 ~~~-~~~Vy~~~~t~~~l~~~~ 101 (422)
T TIGR00649 81 TVG-FPPIYGTPLTIALIKSKI 101 (422)
T ss_pred hCC-CCeEEeCHHHHHHHHHHH
Confidence 552 478999999988866544
No 5
>KOG1136|consensus
Probab=99.69 E-value=7.9e-17 Score=117.37 Aligned_cols=103 Identities=30% Similarity=0.493 Sum_probs=85.3
Q ss_pred CcEEEEEecCCCCCCCCEEEEEeCCeEEEEecCCCCCcCHH-H---HHHh---hcCCCCccEEEecCCChhhcCChHHHH
Q psy17634 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-F---VKEL---KRHVHHIDAVLLSYPDVAHLGALPYMV 75 (119)
Q Consensus 3 ~~m~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~-~---~~~l---~~~~~~i~~illTH~H~DH~ggl~~l~ 75 (119)
..++++++|...++|.+|.|+..+++.|++|||....+..+ + ..++ +.-...||.|+|||.|.||+|.+|++.
T Consensus 2 p~i~v~pLGAGQdvGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfs 81 (501)
T KOG1136|consen 2 PEIKVTPLGAGQDVGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFS 81 (501)
T ss_pred CcceEEeccCCcccCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchH
Confidence 45899999887889999999999999999999986654211 1 2222 222345899999999999999999999
Q ss_pred hhcCCCCcEEechhhHHHHHHhhHHHHhhh
Q psy17634 76 GKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105 (119)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 105 (119)
+-.+|+.|||++-++.+....++.|+.+..
T Consensus 82 Ev~GY~GPIYMt~PTkaicPvlLeDyRkv~ 111 (501)
T KOG1136|consen 82 EVVGYDGPIYMTYPTKAICPVLLEDYRKVA 111 (501)
T ss_pred hhhCCCCceEEecchhhhchHHHHHHHHHh
Confidence 888999999999999999999999987654
No 6
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.68 E-value=2.9e-16 Score=121.82 Aligned_cols=96 Identities=21% Similarity=0.312 Sum_probs=81.2
Q ss_pred cEEEEEecCCCCCCCCEEEEEeCCeEEEEecCCCCCcC--------HHHHHHhhcCCCCccEEEecCCChhhcCChHHHH
Q psy17634 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS--------MDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMV 75 (119)
Q Consensus 4 ~m~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~--------~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~ 75 (119)
.++++++||.++.|.|||+++.+++.+++|||..-... .....++.++..++++|||||+|.||+|++|++.
T Consensus 8 ~i~i~~lGG~~EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll 87 (555)
T COG0595 8 KIKIFALGGVGEIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLL 87 (555)
T ss_pred ceEEEEecChhhhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHH
Confidence 68999999999999999999999999999999743211 1124567778889999999999999999999999
Q ss_pred hhcCCCCcEEechhhHHHHHHhhHH
Q psy17634 76 GKCGLSCPIFATIPVYKMGQMFMYD 100 (119)
Q Consensus 76 ~~~~~~~~v~~~~~~~~~~~~~~~~ 100 (119)
.+.. .+|||+++-+..+++..+.+
T Consensus 88 ~~~~-~~piy~s~lt~~Li~~k~~~ 111 (555)
T COG0595 88 KQVL-FAPIYASPLTAALIKEKLKE 111 (555)
T ss_pred hcCC-cCceecCHhhHHHHHHHHHH
Confidence 6552 49999999999998887764
No 7
>PRK00055 ribonuclease Z; Reviewed
Probab=99.65 E-value=5.3e-16 Score=110.49 Aligned_cols=90 Identities=16% Similarity=0.208 Sum_probs=66.6
Q ss_pred EEEEEecCCCCC-----CCCEEEEEeCCeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhc-
Q psy17634 5 IKMTSLSGTMDE-----SPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKC- 78 (119)
Q Consensus 5 m~i~~lg~~~~~-----~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~- 78 (119)
|+|+++|+.+.. .++|++|+.++..+|||||.+.. ..+...+....++++||+||.|.||++|++.+...+
T Consensus 2 m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~~---~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~ 78 (270)
T PRK00055 2 MELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGTQ---RQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRS 78 (270)
T ss_pred eEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHHH---HHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhh
Confidence 899999765543 46899999988999999998532 223233335568999999999999999999876322
Q ss_pred ----CCCCcEEechhhHHHHHHh
Q psy17634 79 ----GLSCPIFATIPVYKMGQMF 97 (119)
Q Consensus 79 ----~~~~~v~~~~~~~~~~~~~ 97 (119)
...++||+++.+.+.++..
T Consensus 79 ~~~~~~~l~iy~p~~~~~~~~~~ 101 (270)
T PRK00055 79 LSGRTEPLTIYGPKGIKEFVETL 101 (270)
T ss_pred hcCCCceEEEECCccHHHHHHHH
Confidence 1246799998877765543
No 8
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.8e-15 Score=114.88 Aligned_cols=99 Identities=28% Similarity=0.456 Sum_probs=80.3
Q ss_pred EEEEEecCCCCCCCCEEEEEeCCeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCCCCcE
Q psy17634 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPI 84 (119)
Q Consensus 5 m~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v 84 (119)
|++.++|+..++++.|.+++.++..+++|||................+ ++|++++||+|.||+|+++.+.... ++.+|
T Consensus 1 ~~~~~~g~~~evg~s~~~l~~~~~~il~D~G~~~~~~~~~~p~~~~~~-~vDavllTHaHlDH~g~lp~l~~~~-~~~~v 78 (427)
T COG1236 1 MTLRFLGAAREVGRSCVLLETGGTRILLDCGLFPGDPSPERPLLPPFP-KVDAVLLTHAHLDHIGALPYLVRNG-FEGPV 78 (427)
T ss_pred CceecccccCCcCcEEEEEEECCceEEEECCCCcCcCCccCCCCCCCC-CcCEEEeccCchhhhcccHHHHHhc-cCCce
Confidence 467888999999999999999999999999997754321111111122 6999999999999999999998543 47999
Q ss_pred EechhhHHHHHHhhHHHHhhh
Q psy17634 85 FATIPVYKMGQMFMYDLFQVR 105 (119)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~ 105 (119)
|++++|.++++..+.|.+...
T Consensus 79 ~aT~~T~~l~~~~l~d~~~~~ 99 (427)
T COG1236 79 YATPPTAALLKVLLGDSLKLA 99 (427)
T ss_pred eeccCHHHHHHHHHHHHHhhh
Confidence 999999999999999987766
No 9
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.60 E-value=2.4e-15 Score=106.14 Aligned_cols=75 Identities=28% Similarity=0.416 Sum_probs=63.9
Q ss_pred CCEEEEEeCCeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCCCCcEEechhhHH
Q psy17634 18 PPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYK 92 (119)
Q Consensus 18 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~~~~~ 92 (119)
|-++||+.++..||+|+|.....-...++.++.++.++|+++|||.|+||+||++++.+....++|||+++....
T Consensus 22 GfS~LVE~~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 22 GFSALVEDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred ceEEEEEcCCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 578999999999999999766544556788889999999999999999999999999864434789999888755
No 10
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.55 E-value=1.2e-14 Score=105.39 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=64.6
Q ss_pred EEEEecCCCC-----CCCCEEEEEeCCeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcC-
Q psy17634 6 KMTSLSGTMD-----ESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG- 79 (119)
Q Consensus 6 ~i~~lg~~~~-----~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~- 79 (119)
+|++||+.++ ...+|++|+.++..+|||||.+.. ..+...+....++++|||||.|.||++|++.+.....
T Consensus 1 ~~~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g~~---~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~ 77 (299)
T TIGR02651 1 EITFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEGTQ---RQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSF 77 (299)
T ss_pred CEEEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHHHH---HHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhcc
Confidence 5788876543 245789999988999999998532 2233333345679999999999999999998864221
Q ss_pred ----CCCcEEechhhHHHHHHh
Q psy17634 80 ----LSCPIFATIPVYKMGQMF 97 (119)
Q Consensus 80 ----~~~~v~~~~~~~~~~~~~ 97 (119)
..++||+++.+.+.++..
T Consensus 78 ~~~~~~i~Iy~p~~~~~~l~~~ 99 (299)
T TIGR02651 78 QGRKEPLTIYGPPGIKEFIETS 99 (299)
T ss_pred CCCCceEEEECCccHHHHHHHH
Confidence 246799999887775543
No 11
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.54 E-value=1.1e-14 Score=97.15 Aligned_cols=71 Identities=27% Similarity=0.392 Sum_probs=54.5
Q ss_pred CCCEEEEEeCCeEEEEecCCCCCcCHHHH-HHhhcCCCCccEEEecCCChhhcCChHHHHhhcCCCCcEEechh
Q psy17634 17 SPPCYLLQVDEFKILLDCGWDEMFSMDFV-KELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIP 89 (119)
Q Consensus 17 ~~~~~li~~~~~~iLiD~G~~~~~~~~~~-~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~~ 89 (119)
+.|||+|+.+++.+|||||.......... ........+|++||+||.|.||+||+..+.++. .........
T Consensus 5 ~~n~~li~~~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~--~~~~~~~~~ 76 (194)
T PF00753_consen 5 GSNSYLIEGGDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAG--PVVIIYSSA 76 (194)
T ss_dssp EEEEEEEEETTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHT--TEEEEEEHH
T ss_pred eEEEEEEEECCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECccccccccccccccccc--ceeeeeccc
Confidence 46999999999999999999664332221 345668889999999999999999999999765 344444333
No 12
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.51 E-value=5.7e-14 Score=102.57 Aligned_cols=74 Identities=20% Similarity=0.183 Sum_probs=54.6
Q ss_pred CCEEEEEeCC-eEEEEecCCCCCcCHHHHHHh-------hcCCCCccEEEecCCChhhcCChHHHHhhcCCCCcEEechh
Q psy17634 18 PPCYLLQVDE-FKILLDCGWDEMFSMDFVKEL-------KRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIP 89 (119)
Q Consensus 18 ~~~~li~~~~-~~iLiD~G~~~~~~~~~~~~l-------~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~~ 89 (119)
.+|++|+.++ ..+|||||.+.. .++... +.+..++++|||||.|.||+.|++.+.. ...++||+++.
T Consensus 39 ~ss~li~~~g~~~iLiD~G~g~~---~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~--~~~l~Vyg~~~ 113 (302)
T PRK05184 39 QSSIAVSADGEDWVLLNASPDIR---QQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLRE--GQPFPVYATPA 113 (302)
T ss_pred ccEEEEEcCCCEEEEEECChhHH---HHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhcc--CCCeEEEeCHH
Confidence 3578897655 469999998542 122221 1244589999999999999999999863 24789999999
Q ss_pred hHHHHHH
Q psy17634 90 VYKMGQM 96 (119)
Q Consensus 90 ~~~~~~~ 96 (119)
+.+.++.
T Consensus 114 ~~~~l~~ 120 (302)
T PRK05184 114 VLEDLST 120 (302)
T ss_pred HHHHHHh
Confidence 8877654
No 13
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.50 E-value=7.6e-14 Score=93.31 Aligned_cols=74 Identities=28% Similarity=0.421 Sum_probs=58.8
Q ss_pred CCCCEEEEEeCCeEEEEecCCCCCcCHHH---HHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCCCCcEEechhhHH
Q psy17634 16 ESPPCYLLQVDEFKILLDCGWDEMFSMDF---VKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYK 92 (119)
Q Consensus 16 ~~~~~~li~~~~~~iLiD~G~~~~~~~~~---~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~~~~~ 92 (119)
..+||++|+.++..+|||||..... .. ++.+ ...++++|++||.|.||++|++.+.++ +++++|++....+
T Consensus 4 ~~~~~~li~~~~~~iliD~g~~~~~--~~~~~l~~~--~~~~i~~i~iTH~H~DH~~g~~~~~~~--~~~~i~~~~~~~~ 77 (183)
T smart00849 4 VGVNSYLVEGDGGAILIDTGPGEAE--DLLAELKKL--GPKDIDAIILTHGHPDHIGGLPELLEA--PGAPVYAPEGTAE 77 (183)
T ss_pred cceeEEEEEeCCceEEEeCCCChhH--HHHHHHHHc--CchhhcEEEecccCcchhccHHHHHhC--CCCcEEEchhhhH
Confidence 3478999999999999999965432 22 3333 367899999999999999999999855 3889999988887
Q ss_pred HHH
Q psy17634 93 MGQ 95 (119)
Q Consensus 93 ~~~ 95 (119)
.++
T Consensus 78 ~~~ 80 (183)
T smart00849 78 LLK 80 (183)
T ss_pred HHh
Confidence 655
No 14
>KOG1137|consensus
Probab=99.49 E-value=1.5e-14 Score=110.46 Aligned_cols=109 Identities=24% Similarity=0.393 Sum_probs=90.2
Q ss_pred cEEEEEecCCCCCCCCEEEEEeCCeEEEEecCCCCCcCH----HHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcC
Q psy17634 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSM----DFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79 (119)
Q Consensus 4 ~m~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~----~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~ 79 (119)
.++++++|+.+++|++|.+++..++.|++|||..++..- ..++.+ +...+|.+++||.|.||++.+|++.++..
T Consensus 13 ~l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~v--d~s~id~llIthFhldh~aslp~~~qkTs 90 (668)
T KOG1137|consen 13 QLKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEV--DLSAIDPLLITHFHLDHAASLPFTLQKTS 90 (668)
T ss_pred cEEEEECCCCcccCceEEEEEecCeEEEeccccCccccccccccchhhc--ccccccHHHHhhhhhhhcccccceeeecc
Confidence 377999998889999999999999999999999776531 223333 67789999999999999999999998777
Q ss_pred CCCcEEechhhHHHHHHhhHHHHhhhhccceeeee
Q psy17634 80 LSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLL 114 (119)
Q Consensus 80 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (119)
+..++|++.+|.+..+.++.|+...+..+.+-.|+
T Consensus 91 f~grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly 125 (668)
T KOG1137|consen 91 FIGRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLY 125 (668)
T ss_pred ccceeEEecchHHHHHhhhhcceEeeeccCccccc
Confidence 78899999999999999999998766554433333
No 15
>PRK02113 putative hydrolase; Provisional
Probab=99.48 E-value=4.2e-13 Score=95.25 Aligned_cols=73 Identities=29% Similarity=0.379 Sum_probs=54.8
Q ss_pred CEEEEEeCCeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhc-CCCCcEEechhhHHHHHH
Q psy17634 19 PCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKC-GLSCPIFATIPVYKMGQM 96 (119)
Q Consensus 19 ~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~-~~~~~v~~~~~~~~~~~~ 96 (119)
+|++|+.++..+|||||.... ..+ ++....++++|||||.|.||++|++.+.... ..+++||+++.+.+.+..
T Consensus 36 ~s~li~~~~~~iLiD~G~g~~---~~l--~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~ 109 (252)
T PRK02113 36 TSALVETEGARILIDCGPDFR---EQM--LRLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRS 109 (252)
T ss_pred eEEEEEECCeEEEEECCchHH---HHH--HhcCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHh
Confidence 568999999999999998432 112 2225678999999999999999999775211 136889999988776554
No 16
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.48 E-value=1.5e-13 Score=100.22 Aligned_cols=88 Identities=16% Similarity=0.153 Sum_probs=61.8
Q ss_pred EEEecCCCCC-----CCCEEEEEeC----CeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhh
Q psy17634 7 MTSLSGTMDE-----SPPCYLLQVD----EFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77 (119)
Q Consensus 7 i~~lg~~~~~-----~~~~~li~~~----~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~ 77 (119)
+++||+.++. ..+|++|+.+ +..+|||||.+.. ..+...+.+..++++|||||.|.||++|++.+...
T Consensus 1 ~~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~~---~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~ 77 (303)
T TIGR02649 1 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQ---HQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCS 77 (303)
T ss_pred CEEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCccHH---HHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHH
Confidence 4567654422 3468899753 3689999998642 23334444567899999999999999999987532
Q ss_pred c-----CCCCcEEechhhHHHHHHh
Q psy17634 78 C-----GLSCPIFATIPVYKMGQMF 97 (119)
Q Consensus 78 ~-----~~~~~v~~~~~~~~~~~~~ 97 (119)
. ...++||+++++.+.+...
T Consensus 78 ~~~~~~~~~l~Iygp~~~~~~l~~~ 102 (303)
T TIGR02649 78 RSMSGIIQPLTIYGPQGIREFVETA 102 (303)
T ss_pred HHhcCCCCCeEEEechhHHHHHHHH
Confidence 1 1246899999987765543
No 17
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.47 E-value=3.8e-13 Score=95.55 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=50.2
Q ss_pred CCEEEEEeCCeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCCCCcEEechhhH
Q psy17634 18 PPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVY 91 (119)
Q Consensus 18 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~~~~ 91 (119)
.+|++|+.++..+|||||.... .+. ..+.++++|||||.|.||++|+..+.......++||++..+.
T Consensus 37 ~~s~li~~~~~~iLiD~G~~~~-----~~~--~~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~ 103 (250)
T PRK11244 37 PCSALIEFNGARTLIDAGLPDL-----AER--FPPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPE 103 (250)
T ss_pred eeEEEEEECCCEEEEECCChHH-----hhc--CCcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchh
Confidence 3578999888999999996321 111 246789999999999999999987753322367899987654
No 18
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.44 E-value=8e-13 Score=96.17 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=66.1
Q ss_pred EEEEEecCCCC-----CCCCEEEEEeCCeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcC
Q psy17634 5 IKMTSLSGTMD-----ESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79 (119)
Q Consensus 5 m~i~~lg~~~~-----~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~ 79 (119)
|+++++|+.+. ...++++++.++..+|||||.... .++......+.++++|||||.|.||+.|++.+.....
T Consensus 2 m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeGt~---~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~ 78 (292)
T COG1234 2 MEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEGTQ---HQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRS 78 (292)
T ss_pred cEEEEEecCCCCCcCccccceeEEEeCCeeEEEECCHhHH---HHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhh
Confidence 88999976554 234678998888999999998543 3345555566689999999999999999997654221
Q ss_pred ----C-CCcEEechhhHHHHHHh
Q psy17634 80 ----L-SCPIFATIPVYKMGQMF 97 (119)
Q Consensus 80 ----~-~~~v~~~~~~~~~~~~~ 97 (119)
. ..+||++++..+.....
T Consensus 79 ~~~~~~~l~iygP~g~~~~~~~~ 101 (292)
T COG1234 79 FRGRREPLKIYGPPGIKEFVETS 101 (292)
T ss_pred ccCCCCceeEECCcchhhhhhhh
Confidence 1 25789888877664443
No 19
>PRK02126 ribonuclease Z; Provisional
Probab=99.43 E-value=1.7e-12 Score=95.99 Aligned_cols=90 Identities=13% Similarity=0.201 Sum_probs=65.6
Q ss_pred CCCcEEEEEecCCCCCCCCEEEEEeC--CeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhc
Q psy17634 1 MTSIIKMTSLSGTMDESPPCYLLQVD--EFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKC 78 (119)
Q Consensus 1 M~~~m~i~~lg~~~~~~~~~~li~~~--~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~ 78 (119)
|...++.+...| ....|||++..+ +..+|||||. ...+ ......++++||+||.|.||++|++.+....
T Consensus 1 ~~~~~~~~~~~g--~~~dn~~~l~~~~~~~~iLiD~G~-----~~~l--~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~ 71 (334)
T PRK02126 1 MFRLLEPRLVNG--PFDDPGLYVDFLFERRALLFDLGD-----LHHL--PPRELLRISHIFVSHTHMDHFIGFDRLLRHC 71 (334)
T ss_pred CCCcceeEEecC--CCCCcEEEEEECCCCeEEEEcCCC-----HHHH--hhcCCCccCEEEEcCCChhHhCcHHHHHHHh
Confidence 444455555533 344799998864 7899999998 1222 2236678999999999999999999997533
Q ss_pred ---CCCCcEEechhhHHHHHHhhH
Q psy17634 79 ---GLSCPIFATIPVYKMGQMFMY 99 (119)
Q Consensus 79 ---~~~~~v~~~~~~~~~~~~~~~ 99 (119)
...++||+++++.+.++..+.
T Consensus 72 ~~r~~~l~iygp~~~~~~l~~~~~ 95 (334)
T PRK02126 72 LGRPRRLRLFGPPGFADQVEHKLA 95 (334)
T ss_pred ccCCCCeEEEECHHHHHHHHHHhc
Confidence 125789999999998777554
No 20
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.43 E-value=1.9e-13 Score=99.88 Aligned_cols=73 Identities=16% Similarity=0.115 Sum_probs=56.0
Q ss_pred CCEEEEEe-CCeEEEEecCCCCCcCHHHHHHh-------hcCCCCccEEEecCCChhhcCChHHHHhhcCCCCcEEechh
Q psy17634 18 PPCYLLQV-DEFKILLDCGWDEMFSMDFVKEL-------KRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIP 89 (119)
Q Consensus 18 ~~~~li~~-~~~~iLiD~G~~~~~~~~~~~~l-------~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~~ 89 (119)
.+|++|+. ++..+|||||.+.. .++..+ +....+|++||+||.|.||+.|++.+.++ ..+|||+++.
T Consensus 38 rss~ll~~~g~~~iLID~Gpd~r---~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~--~~lpVya~~~ 112 (302)
T TIGR02108 38 QSSIAVSADGERWVLLNASPDIR---QQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREG--QPFTLYATEM 112 (302)
T ss_pred ccEEEEEeCCCEEEEEECCHHHH---HHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCC--CCceEEECHH
Confidence 45788865 45699999998543 222222 34577899999999999999999999643 4899999999
Q ss_pred hHHHHH
Q psy17634 90 VYKMGQ 95 (119)
Q Consensus 90 ~~~~~~ 95 (119)
+.+.++
T Consensus 113 t~~~L~ 118 (302)
T TIGR02108 113 VLQDLS 118 (302)
T ss_pred HHHHHH
Confidence 988765
No 21
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.42 E-value=7e-13 Score=92.63 Aligned_cols=79 Identities=22% Similarity=0.224 Sum_probs=58.5
Q ss_pred EEEEEecCCCCCCCCEEEEEeCCeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCCCCcE
Q psy17634 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPI 84 (119)
Q Consensus 5 m~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v 84 (119)
|+++.+| .+|++|+.++..+|||++....... .+.....++|+|++||.|.||++++..+..+ .++++
T Consensus 1 m~i~~lG------~s~~li~~~~~~iLiDP~~~~~~~~----~~~~~~~~id~vliTH~H~DH~~~~~~~~~~--~~~~v 68 (228)
T PRK00685 1 MKITWLG------HSAFLIETGGKKILIDPFITGNPLA----DLKPEDVKVDYILLTHGHGDHLGDTVEIAKR--TGATV 68 (228)
T ss_pred CEEEEEc------ceEEEEEECCEEEEECCCCCCCCCC----CCChhcCcccEEEeCCCCccccccHHHHHHh--CCCEE
Confidence 6889996 5799999999999999866422111 1111233899999999999999998887643 37899
Q ss_pred EechhhHHHHH
Q psy17634 85 FATIPVYKMGQ 95 (119)
Q Consensus 85 ~~~~~~~~~~~ 95 (119)
+++....+.++
T Consensus 69 ~~~~~~~~~~~ 79 (228)
T PRK00685 69 IANAELANYLS 79 (228)
T ss_pred EEeHHHHHHHH
Confidence 99887666543
No 22
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.42 E-value=1.1e-12 Score=93.99 Aligned_cols=78 Identities=13% Similarity=0.082 Sum_probs=58.6
Q ss_pred EEEEEecCCCCCCCC-EEEEEeC--CeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCCC
Q psy17634 5 IKMTSLSGTMDESPP-CYLLQVD--EFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLS 81 (119)
Q Consensus 5 m~i~~lg~~~~~~~~-~~li~~~--~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~ 81 (119)
|++++++... -| ||+|..+ +.+++||+|.. ...++.++....++++|++||.|.||+||+..+.++++ +
T Consensus 1 ~~i~~~~~~~---dNy~Yli~d~~~~~~vlIDp~~~----~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~-~ 72 (258)
T PLN02469 1 MKIIPVPCLE---DNYAYLIIDESTKDAAVVDPVDP----EKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVP-G 72 (258)
T ss_pred CeEEEecccc---ceEEEEEEeCCCCeEEEECCCCh----HHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCC-C
Confidence 3566665433 35 9999765 47999999842 23455565566789999999999999999999997654 7
Q ss_pred CcEEechhh
Q psy17634 82 CPIFATIPV 90 (119)
Q Consensus 82 ~~v~~~~~~ 90 (119)
++||++..+
T Consensus 73 ~~V~~~~~~ 81 (258)
T PLN02469 73 IKVYGGSLD 81 (258)
T ss_pred CEEEEechh
Confidence 899987643
No 23
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.41 E-value=7.5e-13 Score=99.73 Aligned_cols=78 Identities=28% Similarity=0.487 Sum_probs=59.0
Q ss_pred CCCCCEEEEEeCCeEEEEecCCCCCcCHHHHHHhhc--CCCCccEEEecCCChhhcCChHHHHhhcCCCCcEEechhhHH
Q psy17634 15 DESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKR--HVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYK 92 (119)
Q Consensus 15 ~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~--~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~~~~~ 92 (119)
+.+.|||+|.. ++.+|||||.... ....++.+.. ...+|++|++||.|+||+||++.+.++++ +++||+++.+.+
T Consensus 30 g~~~NsyLI~~-~~~vLIDtg~~~~-~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p-~a~V~~~~~~~~ 106 (394)
T PRK11921 30 GSSYNSYLIKD-EKTVLIDTVWQPF-AKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIP-DTPIYCTKNGAK 106 (394)
T ss_pred ceEEEEEEEeC-CCEEEEeCCCCCc-HHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHCC-CCEEEECHHHHH
Confidence 45679999975 5689999997542 2233343332 45689999999999999999999986654 899999998776
Q ss_pred HHH
Q psy17634 93 MGQ 95 (119)
Q Consensus 93 ~~~ 95 (119)
.+.
T Consensus 107 ~l~ 109 (394)
T PRK11921 107 SLK 109 (394)
T ss_pred HHH
Confidence 643
No 24
>PRK04286 hypothetical protein; Provisional
Probab=99.40 E-value=2.9e-13 Score=98.69 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=51.3
Q ss_pred EEEEEecCCC-CCCCCEEEEEeCCeEEEEecCCCCCc--------------CHHHHHHhhcCCCCccEEEecCCChhhcC
Q psy17634 5 IKMTSLSGTM-DESPPCYLLQVDEFKILLDCGWDEMF--------------SMDFVKELKRHVHHIDAVLLSYPDVAHLG 69 (119)
Q Consensus 5 m~i~~lg~~~-~~~~~~~li~~~~~~iLiD~G~~~~~--------------~~~~~~~l~~~~~~i~~illTH~H~DH~g 69 (119)
|++.++|+.+ +..+||++|+.++..||||+|..... .......+.....++|+||+||.|.||++
T Consensus 1 m~~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~ 80 (298)
T PRK04286 1 MKIIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHT 80 (298)
T ss_pred CEEEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCC
Confidence 5788886522 23349999999999999999964311 01224445567778999999999999998
Q ss_pred ChHHH
Q psy17634 70 ALPYM 74 (119)
Q Consensus 70 gl~~l 74 (119)
|+...
T Consensus 81 g~~~~ 85 (298)
T PRK04286 81 PFYED 85 (298)
T ss_pred Ccccc
Confidence 87654
No 25
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.37 E-value=1.6e-12 Score=92.54 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=52.7
Q ss_pred CCEEEEEeCC-eEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCCCCcEEechhh
Q psy17634 18 PPCYLLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPV 90 (119)
Q Consensus 18 ~~~~li~~~~-~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~~~ 90 (119)
.++|+|..++ ..+|||+|... ..++.++....++++|++||.|.||+||+..+.+++ +++||++..+
T Consensus 10 N~~yli~~~~~~~ilID~g~~~----~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~--~~~V~~~~~~ 77 (248)
T TIGR03413 10 NYIWLLHDPDGQAAVVDPGEAE----PVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAF--PAPVYGPAEE 77 (248)
T ss_pred EEEEEEEcCCCCEEEEcCCChH----HHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHC--CCeEEecccc
Confidence 4678887665 79999999642 334555555567999999999999999999998665 5899998764
No 26
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.37 E-value=1.8e-12 Score=99.86 Aligned_cols=78 Identities=26% Similarity=0.429 Sum_probs=58.9
Q ss_pred CCCCCEEEEEeCCeEEEEecCCCCCcCHHHHHHhh--cCCCCccEEEecCCChhhcCChHHHHhhcCCCCcEEechhhHH
Q psy17634 15 DESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELK--RHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYK 92 (119)
Q Consensus 15 ~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~--~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~~~~~ 92 (119)
+.+.|||||+ +++.+|||+|... .....++.+. ....+|++|++||.|+||+||++.+.++++ +++||+++.+.+
T Consensus 32 G~t~NsYLI~-~~~~vLIDtg~~~-~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p-~a~V~~s~~~~~ 108 (479)
T PRK05452 32 GSSYNSYLIR-EEKNVLIDTVDHK-FSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIP-DTPIYCTANAID 108 (479)
T ss_pred CcEEEEEEEE-CCCEEEEeCCCcc-cHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHCC-CCEEEECHHHHH
Confidence 4467999998 4678999999532 2223344443 234689999999999999999999986653 899999998876
Q ss_pred HHH
Q psy17634 93 MGQ 95 (119)
Q Consensus 93 ~~~ 95 (119)
.+.
T Consensus 109 ~l~ 111 (479)
T PRK05452 109 SIN 111 (479)
T ss_pred HHH
Confidence 643
No 27
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.36 E-value=2.5e-12 Score=91.75 Aligned_cols=79 Identities=14% Similarity=0.233 Sum_probs=58.3
Q ss_pred EEEEEecCCCCCCCCEEEEEeC-CeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCCCCc
Q psy17634 5 IKMTSLSGTMDESPPCYLLQVD-EFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCP 83 (119)
Q Consensus 5 m~i~~lg~~~~~~~~~~li~~~-~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~ 83 (119)
|+|+++..... ..+|++..+ +..++||+|.. ...++.++....++++|++||.|.||+||+..+.++++ .++
T Consensus 1 ~~i~~~~~~~d--Ny~~li~~~~~~~ilIDpg~~----~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~-~~~ 73 (251)
T PRK10241 1 MNLNSIPAFDD--NYIWVLNDEAGRCLIVDPGEA----EPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFP-QIV 73 (251)
T ss_pred CeeEEeeeecc--eEEEEEEcCCCcEEEECCCCh----HHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCC-CCE
Confidence 45666654332 456877654 57999999963 23455666566678999999999999999999997764 689
Q ss_pred EEechhh
Q psy17634 84 IFATIPV 90 (119)
Q Consensus 84 v~~~~~~ 90 (119)
||++...
T Consensus 74 V~~~~~~ 80 (251)
T PRK10241 74 VYGPQET 80 (251)
T ss_pred EEecccc
Confidence 9987654
No 28
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.36 E-value=4.9e-12 Score=93.25 Aligned_cols=81 Identities=12% Similarity=0.136 Sum_probs=61.9
Q ss_pred cEEEEEecCCCCCCCCEEEEEeC--CeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCCC
Q psy17634 4 IIKMTSLSGTMDESPPCYLLQVD--EFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLS 81 (119)
Q Consensus 4 ~m~i~~lg~~~~~~~~~~li~~~--~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~ 81 (119)
.|+|+.+-...+ .++|+|..+ +..++||+|.. ...++.++....++++|++||.|.||+||+..+.+++ +
T Consensus 75 ~~~i~~ip~l~d--Ny~Yli~d~~t~~~~vVDP~~a----~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~--g 146 (329)
T PLN02398 75 SLQIELVPCLKD--NYAYLLHDEDTGTVGVVDPSEA----VPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY--G 146 (329)
T ss_pred CcEEEEEeeeCc--eEEEEEEECCCCEEEEEcCCCH----HHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhc--C
Confidence 467777754332 469999654 46899999853 2345666667788999999999999999999998765 7
Q ss_pred CcEEechhhHH
Q psy17634 82 CPIFATIPVYK 92 (119)
Q Consensus 82 ~~v~~~~~~~~ 92 (119)
++||++..+.+
T Consensus 147 a~V~g~~~~~~ 157 (329)
T PLN02398 147 AKVIGSAVDKD 157 (329)
T ss_pred CEEEEehHHhh
Confidence 99999887554
No 29
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.29 E-value=1e-11 Score=87.58 Aligned_cols=68 Identities=16% Similarity=0.262 Sum_probs=51.2
Q ss_pred CCEEEEEeCCeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCCCCcEEechhhHH
Q psy17634 18 PPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYK 92 (119)
Q Consensus 18 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~~~~~ 92 (119)
++|++|+.++..+|||||.... .+. ....++++|||||.|.||++|+..+....+.+++||+++.+..
T Consensus 27 ~~s~~i~~~~~~iliD~G~~~~-----~~~--~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~ 94 (238)
T TIGR03307 27 PCSAVIEFNGARTLIDAGLTDL-----AER--FPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEG 94 (238)
T ss_pred ceEEEEEECCcEEEEECCChhH-----hhc--cCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhh
Confidence 4678999888999999996321 111 2456899999999999999999777533334688999887643
No 30
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.28 E-value=2e-11 Score=87.11 Aligned_cols=81 Identities=14% Similarity=0.032 Sum_probs=57.8
Q ss_pred EEEEEecCCCCCCCCEEEEEe----CCeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCC
Q psy17634 5 IKMTSLSGTMDESPPCYLLQV----DEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL 80 (119)
Q Consensus 5 m~i~~lg~~~~~~~~~~li~~----~~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~ 80 (119)
|.+..+ -..+.+.|||++.. +++++|||+|.... ...++.++....++++|++||.|.||++|+..+.++++
T Consensus 11 m~~~~~-~~~~~~~~~Yll~d~~~~~~~avlIDP~~~~~--~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~~- 86 (251)
T PLN02962 11 LLFRQL-FEKESSTYTYLLADVSHPDKPALLIDPVDKTV--DRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKLP- 86 (251)
T ss_pred eEEEEe-ecCCceeEEEEEEeCCCCCCEEEEECCCCCcH--HHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHCC-
Confidence 444444 12334579999865 36799999985321 23345565566789999999999999999999986653
Q ss_pred CCcEEechh
Q psy17634 81 SCPIFATIP 89 (119)
Q Consensus 81 ~~~v~~~~~ 89 (119)
++++++...
T Consensus 87 ~a~v~~~~~ 95 (251)
T PLN02962 87 GVKSIISKA 95 (251)
T ss_pred CCeEEeccc
Confidence 788888653
No 31
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.22 E-value=3.2e-11 Score=90.02 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=74.0
Q ss_pred CCCCCCEEEEEeCCeEEEEecCCCCCcCHHHHHHhh--cCCCCccEEEecCCChhhcCChHHHHhhcCCCCcEEechhhH
Q psy17634 14 MDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELK--RHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVY 91 (119)
Q Consensus 14 ~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~--~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~~~~ 91 (119)
.+.+.|+|||. +++.+|||++... +....+..+. .++.+||+|+++|..+||+|+++.+.+..+ +++|+++....
T Consensus 32 ~GttyNSYLI~-~~k~aLID~~~~~-~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p-~a~ii~s~~~~ 108 (388)
T COG0426 32 RGTTYNSYLIV-GDKTALIDTVGEK-FFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAP-NAKIICSKLAA 108 (388)
T ss_pred CCceeeeEEEe-CCcEEEECCCCcc-hHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCC-CCEEEeeHHHH
Confidence 45678999999 8899999998744 3333344443 367789999999999999999999997765 99999999999
Q ss_pred HHHHHhhHHH--Hhhhhccceeeee
Q psy17634 92 KMGQMFMYDL--FQVRYDTFLKLLL 114 (119)
Q Consensus 92 ~~~~~~~~~~--~~~~~~~~~~~~~ 114 (119)
.+++.+..+. ++..+.++..++.
T Consensus 109 ~~L~~~~~~~~~~~ivk~Gd~ldlG 133 (388)
T COG0426 109 RFLKGFYHDPEWFKIVKTGDTLDLG 133 (388)
T ss_pred HHHHHhcCCccceeecCCCCEeccC
Confidence 9877664443 3444555555544
No 32
>PRK11539 ComEC family competence protein; Provisional
Probab=99.15 E-value=2.5e-10 Score=92.27 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=59.2
Q ss_pred cEEEEEecCCCCCCCCEEEEEeCCeEEEEecCCCCC-c--C-HHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcC
Q psy17634 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEM-F--S-MDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79 (119)
Q Consensus 4 ~m~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~-~--~-~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~ 79 (119)
.++++++ ..++ |.|.+|+.+++.+|||+|.... . . ...+..++....++|++++||.|.||+||++.+.++++
T Consensus 500 ~~~v~~l-DVGq--G~a~li~~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~~ 576 (755)
T PRK11539 500 EWRVDML-DVGH--GLAVVIERNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAWP 576 (755)
T ss_pred cEEEEEE-EccC--ceEEEEEECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhCC
Confidence 3577777 2333 6899999999999999996421 1 1 12245555555579999999999999999999997664
Q ss_pred CCCcEEech
Q psy17634 80 LSCPIFATI 88 (119)
Q Consensus 80 ~~~~v~~~~ 88 (119)
..+++.+.
T Consensus 577 -~~~i~~~~ 584 (755)
T PRK11539 577 -MAWIRSPL 584 (755)
T ss_pred -cceeeccC
Confidence 56777653
No 33
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.13 E-value=3.6e-10 Score=90.21 Aligned_cols=81 Identities=15% Similarity=0.104 Sum_probs=57.5
Q ss_pred EEEEEecCCCCCCCCEEEEEeCCeEEEEecCCCCCc---CH-HHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCC
Q psy17634 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMF---SM-DFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL 80 (119)
Q Consensus 5 m~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~---~~-~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~ 80 (119)
.+++++ ..++ |.|++|+.+++.+|||+|..... .+ ..+..++....++|++++||.|.||+||++.+.++++
T Consensus 440 ~~v~~l-DVGq--Gdaili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~~~- 515 (662)
T TIGR00361 440 WQVDML-DVGQ--GLAMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKHHP- 515 (662)
T ss_pred EEEEEE-ecCC--ceEEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHhCC-
Confidence 567777 2233 68999999999999999964221 11 1245555444449999999999999999999987653
Q ss_pred CCcEEechh
Q psy17634 81 SCPIFATIP 89 (119)
Q Consensus 81 ~~~v~~~~~ 89 (119)
..+++.+..
T Consensus 516 v~~i~~~~~ 524 (662)
T TIGR00361 516 VKRLVIPKG 524 (662)
T ss_pred ccEEEeccc
Confidence 345766543
No 34
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.12 E-value=4.7e-10 Score=78.07 Aligned_cols=73 Identities=25% Similarity=0.368 Sum_probs=49.5
Q ss_pred CCEEEEEeCC-eEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCCCCcEEechhhH
Q psy17634 18 PPCYLLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVY 91 (119)
Q Consensus 18 ~~~~li~~~~-~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~~~~ 91 (119)
.+++++..++ ..+|||||..........+.+.....+|++|++||.|+||+||+..+.+... .++++..+...
T Consensus 25 ~~~~~~~~~~~~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~-~~~~~~~~~~~ 98 (252)
T COG0491 25 NSVYLLVDGEGGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFG-AAPVIAPAEVP 98 (252)
T ss_pred ccEEEEEcCCCceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcC-CceEEccchhh
Confidence 3455665555 7999999986642122233343333489999999999999999999986542 37774444433
No 35
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.01 E-value=4.1e-10 Score=76.34 Aligned_cols=66 Identities=23% Similarity=0.454 Sum_probs=42.5
Q ss_pred EEEEecCCCCCcCHHHHHHhhc---CCCCccEEEecCCChhhcCChHHHHhhcC-CCCcEEechhhHHHHH
Q psy17634 29 KILLDCGWDEMFSMDFVKELKR---HVHHIDAVLLSYPDVAHLGALPYMVGKCG-LSCPIFATIPVYKMGQ 95 (119)
Q Consensus 29 ~iLiD~G~~~~~~~~~~~~l~~---~~~~i~~illTH~H~DH~ggl~~l~~~~~-~~~~v~~~~~~~~~~~ 95 (119)
.+|||||.+.. .....+.+.. ...++++|||||.|.||+.|++.+..... ...++|+++.+.+.++
T Consensus 2 ~iLiD~g~~~~-~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~ 71 (194)
T PF12706_consen 2 RILIDCGPGTR-SLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLR 71 (194)
T ss_dssp EEEESE-TTHH-HHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHH
T ss_pred EEEEeCCCCcc-cccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHH
Confidence 68999999643 1110111211 11389999999999999999877764221 1128999999988866
No 36
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.90 E-value=1.9e-09 Score=77.50 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=38.4
Q ss_pred eEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCCCCcEEechhhH
Q psy17634 28 FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVY 91 (119)
Q Consensus 28 ~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~~~~ 91 (119)
++++||+|.... .+.+.....++++||+||.|.||+.|++.+.+.+ ..+++....+.
T Consensus 41 ~~~lid~g~~~~-----~~~~~~~~~~idai~~TH~H~DHi~Gl~~l~~~~--~~~~~~~~~~~ 97 (269)
T COG1235 41 KTLLIDAGPDLR-----DQGLRLGVSDLDAILLTHEHSDHIQGLDDLRRAY--TLPIYVNPGTL 97 (269)
T ss_pred eeEEEecChhHH-----hhhhcccccccCeEEEecccHHhhcChHHHHHHh--cCCccccccee
Confidence 366677766321 1222223458999999999999999999998544 56666554443
No 37
>KOG0813|consensus
Probab=98.86 E-value=7.4e-09 Score=74.01 Aligned_cols=70 Identities=16% Similarity=0.057 Sum_probs=49.9
Q ss_pred CCEEEEEeCCeEEEEecCCCCCcCHHH---HHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCCCCcEEech
Q psy17634 18 PPCYLLQVDEFKILLDCGWDEMFSMDF---VKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATI 88 (119)
Q Consensus 18 ~~~~li~~~~~~iLiD~G~~~~~~~~~---~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~ 88 (119)
.++||+.++...+..|++..... ... ++.+.....++.+||.||.|.||+||+..+.+.++++++++.+.
T Consensus 13 Ny~YLl~~~~~~~~a~~vDP~~p-e~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~ 85 (265)
T KOG0813|consen 13 NYMYLLGDGDKTIDADLVDPAEP-EYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGA 85 (265)
T ss_pred ceEEEEecccceeeeeeecCcch-HHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEecCC
Confidence 57999987566666666542221 112 22222367789999999999999999999997655688898875
No 38
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.82 E-value=2.3e-08 Score=72.84 Aligned_cols=60 Identities=25% Similarity=0.326 Sum_probs=46.1
Q ss_pred CCEEEEEeCCeEEEEecCCCCCcCHHHHHHhhc-CCCCccEEEecCCChhhcCChHHHHhhc
Q psy17634 18 PPCYLLQVDEFKILLDCGWDEMFSMDFVKELKR-HVHHIDAVLLSYPDVAHLGALPYMVGKC 78 (119)
Q Consensus 18 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~-~~~~i~~illTH~H~DH~ggl~~l~~~~ 78 (119)
+.+.+++.++..+++|+|..... ...+..|+. ...+||.+++||.|.||+||+..+.+.+
T Consensus 54 g~a~li~~~~~~~l~dtg~~~~~-~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~ 114 (293)
T COG2333 54 GLATLIRSEGKTILYDTGNSMGQ-DVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTI 114 (293)
T ss_pred CeEEEEeeCCceEEeecCcccCc-eeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhC
Confidence 56899999999999999984221 122334432 4567999999999999999999999744
No 39
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.68 E-value=6.2e-08 Score=64.61 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=35.8
Q ss_pred EEEEecCCCCCCCCEEEEEeCCeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCC
Q psy17634 6 KMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGA 70 (119)
Q Consensus 6 ~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~gg 70 (119)
||+.+| .+|++|+.++..||+|+..... .......++|+|++||.|.||+..
T Consensus 1 ~It~lg------ha~~~ie~~g~~iliDP~~~~~-------~~~~~~~~~D~IlisH~H~DH~~~ 52 (163)
T PF13483_consen 1 KITWLG------HASFLIETGGKRILIDPWFSSV-------GYAPPPPKADAILISHSHPDHFDP 52 (163)
T ss_dssp EEEEEE------TTEEEEEETTEEEEES--TTT---------T-TSS-B-SEEEESSSSTTT-CC
T ss_pred CEEEEE------eeEEEEEECCEEEEECCCCCcc-------CcccccCCCCEEEECCCccccCCh
Confidence 567775 6899999999999999985311 111124689999999999999986
No 40
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.65 E-value=1.4e-07 Score=67.31 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=55.8
Q ss_pred CcEEEEEecCCCCCCCCEEEEEeCCeEEEEecCCCCCcCHHHHH--HhhcCCCCccEEEecCCChhhcCChHHHHhhcCC
Q psy17634 3 SIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVK--ELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL 80 (119)
Q Consensus 3 ~~m~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~--~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~ 80 (119)
..|+|+.+| .+|++|+.++..||||+..+......... ........+|+|++||.|.||++.--....+.+
T Consensus 5 ~~m~itwlG------ha~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~- 77 (258)
T COG2220 5 EDMKITWLG------HAAFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTN- 77 (258)
T ss_pred cCceEEEec------ceEEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcC-
Confidence 469999996 68899999999999999986543221100 011235579999999999999997655543322
Q ss_pred CCcEEechhhH
Q psy17634 81 SCPIFATIPVY 91 (119)
Q Consensus 81 ~~~v~~~~~~~ 91 (119)
..+++..+...
T Consensus 78 ~~~~~~~p~~~ 88 (258)
T COG2220 78 KAPVVVVPLGA 88 (258)
T ss_pred CCcEEEeHHHH
Confidence 35655555443
No 41
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=98.64 E-value=6e-08 Score=70.00 Aligned_cols=70 Identities=11% Similarity=-0.069 Sum_probs=48.5
Q ss_pred EEEEEeCCeEEEEe-cCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhc--C----CCCcEEechhhHH
Q psy17634 20 CYLLQVDEFKILLD-CGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKC--G----LSCPIFATIPVYK 92 (119)
Q Consensus 20 ~~li~~~~~~iLiD-~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~--~----~~~~v~~~~~~~~ 92 (119)
++-+......+|+| +|..... .+......++.+||||.|.||++|++.+.-+. . ....||.+++..+
T Consensus 11 ~t~~~~~~~~ilfD~ag~g~~~------~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~ 84 (277)
T TIGR02650 11 FSTIIYSPEEIIFDAAEEGSST------LGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNA 84 (277)
T ss_pred eEEEEECchhheehhhcccchh------HHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhH
Confidence 33444567889999 8875432 23334567999999999999999996654311 1 1245999988777
Q ss_pred HHH
Q psy17634 93 MGQ 95 (119)
Q Consensus 93 ~~~ 95 (119)
...
T Consensus 85 ~ve 87 (277)
T TIGR02650 85 AEE 87 (277)
T ss_pred HHH
Confidence 655
No 42
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=98.64 E-value=1.2e-07 Score=70.94 Aligned_cols=84 Identities=14% Similarity=0.146 Sum_probs=50.8
Q ss_pred cEEEEEecCCCCCCCCEEEEEe-CCeEEEEecCCCCCc------------------CHHHHHH-hh--------cCCCCc
Q psy17634 4 IIKMTSLSGTMDESPPCYLLQV-DEFKILLDCGWDEMF------------------SMDFVKE-LK--------RHVHHI 55 (119)
Q Consensus 4 ~m~i~~lg~~~~~~~~~~li~~-~~~~iLiD~G~~~~~------------------~~~~~~~-l~--------~~~~~i 55 (119)
.++++.+| .++++|+. ++.+||||.-.+... ....++. ++ ....++
T Consensus 37 ~~~~~wlG------~a~~li~~~~g~~ILiD~~~~~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~idp~~i~~I 110 (355)
T PRK11709 37 TFAMWWLG------CTGIWLKTEGGTNVCVDLWCGTGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLDPFAIREI 110 (355)
T ss_pred cEEEEEec------ceEEEEEcCCCcEEEEeecCCCCCccccccccccccchhhhccccccCCCCCCCCcccCHHHCCCC
Confidence 47778885 57889987 578999995111100 0000000 00 134579
Q ss_pred cEEEecCCChhhcC--ChHHHHhhcCCCCcEEechhhHHH
Q psy17634 56 DAVLLSYPDVAHLG--ALPYMVGKCGLSCPIFATIPVYKM 93 (119)
Q Consensus 56 ~~illTH~H~DH~g--gl~~l~~~~~~~~~v~~~~~~~~~ 93 (119)
|+||+||.|.||+. .+..+.+..+.+++++++....+.
T Consensus 111 DaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~ 150 (355)
T PRK11709 111 DAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDL 150 (355)
T ss_pred CEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHH
Confidence 99999999999994 344454333225678887777655
No 43
>KOG2121|consensus
Probab=98.32 E-value=1.9e-07 Score=74.11 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=50.3
Q ss_pred cEEEEEecCCCC---CC--CCEEEEEeCCeE-EEEecCCCCCcCHHH---HHHhhcCCCCccEEEecCCChhhcCChHHH
Q psy17634 4 IIKMTSLSGTMD---ES--PPCYLLQVDEFK-ILLDCGWDEMFSMDF---VKELKRHVHHIDAVLLSYPDVAHLGALPYM 74 (119)
Q Consensus 4 ~m~i~~lg~~~~---~~--~~~~li~~~~~~-iLiD~G~~~~~~~~~---~~~l~~~~~~i~~illTH~H~DH~ggl~~l 74 (119)
.+.|.+||..+. .- .++++|+.+.+. ||+|||.+.-....+ .+......+++++|+|||.|.||..|+..+
T Consensus 442 ~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~v 521 (746)
T KOG2121|consen 442 DPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISV 521 (746)
T ss_pred CcEEEEecCCccCCCcccceEEEEEeccCCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHH
Confidence 477888863222 11 357899887665 999999864321111 111223456789999999999999999988
Q ss_pred Hhhc
Q psy17634 75 VGKC 78 (119)
Q Consensus 75 ~~~~ 78 (119)
.+++
T Consensus 522 L~~r 525 (746)
T KOG2121|consen 522 LQAR 525 (746)
T ss_pred HHHH
Confidence 7544
No 44
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.14 E-value=2.5e-06 Score=65.62 Aligned_cols=72 Identities=15% Similarity=0.097 Sum_probs=50.5
Q ss_pred CCEEEEEeCCeEEEEecCCCCCcCHHHHHHhh--cCCCCccEEEecCCChhhcCChHHHHhhcC---CCCcEEechh
Q psy17634 18 PPCYLLQVDEFKILLDCGWDEMFSMDFVKELK--RHVHHIDAVLLSYPDVAHLGALPYMVGKCG---LSCPIFATIP 89 (119)
Q Consensus 18 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~--~~~~~i~~illTH~H~DH~ggl~~l~~~~~---~~~~v~~~~~ 89 (119)
.|.++|+.+..+|+||+=..+......++-.. .....|.+|+.||+|.||+||+.-+.+... -+++|.++.+
T Consensus 126 sNITfveGdtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~G 202 (655)
T COG2015 126 SNITFVEGDTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAG 202 (655)
T ss_pred cceEEEcCCcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccCceeEecchh
Confidence 37889998899999999665433222232221 234569999999999999999988864321 1567777765
No 45
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.10 E-value=3.1e-06 Score=60.30 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=45.2
Q ss_pred EEEEEecCCC-CCCCCEEEEEeCCeEEEEecCCCCCcCH----------HH----HHHhhcCCCCccEEEecCCChhhcC
Q psy17634 5 IKMTSLSGTM-DESPPCYLLQVDEFKILLDCGWDEMFSM----------DF----VKELKRHVHHIDAVLLSYPDVAHLG 69 (119)
Q Consensus 5 m~i~~lg~~~-~~~~~~~li~~~~~~iLiD~G~~~~~~~----------~~----~~~l~~~~~~i~~illTH~H~DH~g 69 (119)
|+|.+++..+ ++..-|++|++.+-.||||+|.+..... +. .+.+.....+.+-|.|||.|.||.-
T Consensus 1 MkV~Pla~eSLGVRSmAt~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHht 80 (304)
T COG2248 1 MKVIPLASESLGVRSMATFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHT 80 (304)
T ss_pred CceeeccccccchhhhhheeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCC
Confidence 6788884322 2223478999999999999998654321 11 2233344566788999999999997
Q ss_pred C
Q psy17634 70 A 70 (119)
Q Consensus 70 g 70 (119)
-
T Consensus 81 P 81 (304)
T COG2248 81 P 81 (304)
T ss_pred c
Confidence 5
No 46
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=98.10 E-value=8.4e-06 Score=60.53 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=55.2
Q ss_pred EEEec---CCCCCCCCEEEEEeC--CeEEEEecCCCCCcCHHH------------------------HHHhhcCCCCccE
Q psy17634 7 MTSLS---GTMDESPPCYLLQVD--EFKILLDCGWDEMFSMDF------------------------VKELKRHVHHIDA 57 (119)
Q Consensus 7 i~~lg---~~~~~~~~~~li~~~--~~~iLiD~G~~~~~~~~~------------------------~~~l~~~~~~i~~ 57 (119)
+.++| |..+...+++|++.. +..+-+|+|......... .+....-...|.+
T Consensus 3 vi~LG~~GG~~e~nls~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~~ 82 (335)
T PF02112_consen 3 VIVLGSGGGPDEGNLSAYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIKG 82 (335)
T ss_pred EeecCCCCCCCCCCcceeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhhe
Confidence 45564 444445678999864 668999999632110000 0000112246899
Q ss_pred EEecCCChhhcCChHHHHhhcC----CCCcEEechhhHHHHH
Q psy17634 58 VLLSYPDVAHLGALPYMVGKCG----LSCPIFATIPVYKMGQ 95 (119)
Q Consensus 58 illTH~H~DH~ggl~~l~~~~~----~~~~v~~~~~~~~~~~ 95 (119)
.+|||+|.||+.|+-.-..... ..-+||+.+.+.+.++
T Consensus 83 ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk 124 (335)
T PF02112_consen 83 YLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALK 124 (335)
T ss_pred EEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHH
Confidence 9999999999999963322210 2456999999988855
No 47
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=97.68 E-value=0.00018 Score=40.93 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=40.6
Q ss_pred CCEEEEEeCCeEEEE-ecCCCCCcCHHHHHHhhcCCCCccEEEecCCC-hhhcCC
Q psy17634 18 PPCYLLQVDEFKILL-DCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD-VAHLGA 70 (119)
Q Consensus 18 ~~~~li~~~~~~iLi-D~G~~~~~~~~~~~~l~~~~~~i~~illTH~H-~DH~gg 70 (119)
+.|.++..+++..|| +||.... +.+.+-+....+++.||+|+.. .+++||
T Consensus 12 ~p~l~l~~d~~rYlFGn~gEGtQ---R~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 12 GPSLLLFFDSRRYLFGNCGEGTQ---RACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CCEEEEEeCCceEEeccCCcHHH---HHHHHcCCCccccceEEECCCCcccccCC
Confidence 388999999999999 9998653 2334445577899999999999 999987
No 48
>KOG0814|consensus
Probab=97.47 E-value=0.00012 Score=49.89 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=43.9
Q ss_pred CCEEEEEe--CCeEEEEecCCCCCc-CHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCCCCc
Q psy17634 18 PPCYLLQV--DEFKILLDCGWDEMF-SMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCP 83 (119)
Q Consensus 18 ~~~~li~~--~~~~iLiD~G~~~~~-~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~ 83 (119)
..+|++.+ ++.++|||+-..... +.+.++.+ ..++.+.+-||.|.||+-|..++...++ .++
T Consensus 21 TytYll~d~~~~~AviIDPV~et~~RD~qlikdL---gl~LiYa~NTH~HADHiTGtg~Lkt~~p-g~k 85 (237)
T KOG0814|consen 21 TYTYLLGDHKTGKAVIIDPVLETVSRDAQLIKDL---GLDLIYALNTHVHADHITGTGLLKTLLP-GCK 85 (237)
T ss_pred eEEEEeeeCCCCceEEecchhhcccchHHHHHhc---CceeeeeecceeecccccccchHHHhcc-cHH
Confidence 45678864 467999999764432 22334444 5678899999999999999999985553 444
No 49
>KOG1138|consensus
Probab=96.99 E-value=0.0021 Score=50.02 Aligned_cols=50 Identities=28% Similarity=0.499 Sum_probs=43.3
Q ss_pred CCCCccEEEecCCChhhcCChHHHHhhcCCCCcEEechhhHHHHHHhhHHHH
Q psy17634 51 HVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLF 102 (119)
Q Consensus 51 ~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 102 (119)
+...||.|+||..| ..-|+|++-+..|+..+||++.++++.++.++++..
T Consensus 93 d~stiDvILISNy~--~mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv 142 (653)
T KOG1138|consen 93 DASTIDVILISNYM--GMLGLPFITENTGFFGKIYATEPTAQIGRLLMEELV 142 (653)
T ss_pred cccceeEEEEcchh--hhcccceeecCCCceeEEEEechHHHHHHHHHHHHH
Confidence 34568999999888 788999998887888999999999999999888743
No 50
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=96.98 E-value=0.0028 Score=43.34 Aligned_cols=72 Identities=14% Similarity=0.003 Sum_probs=42.8
Q ss_pred CCCCCCEEEEEeCCeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCCCCcEEechhhHHH
Q psy17634 14 MDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKM 93 (119)
Q Consensus 14 ~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~~~~~~ 93 (119)
....-||++...++..|+||+-.-. ....+.+. ....+++|++|| .||+.....+.+++ .++||++..+.+.
T Consensus 19 ~n~dfng~~~~~p~GnilIDP~~ls---~~~~~~l~-a~ggv~~IvLTn--~dHvR~A~~ya~~~--~a~i~~p~~d~~~ 90 (199)
T PF14597_consen 19 RNLDFNGHAWRRPEGNILIDPPPLS---AHDWKHLD-ALGGVAWIVLTN--RDHVRAAEDYAEQT--GAKIYGPAADAAQ 90 (199)
T ss_dssp TTEEEEEEEE--TT--EEES--------HHHHHHHH-HTT--SEEE-SS--GGG-TTHHHHHHHS----EEEEEGGGCCC
T ss_pred hccCceeEEEEcCCCCEEecCcccc---HHHHHHHH-hcCCceEEEEeC--ChhHhHHHHHHHHh--CCeeeccHHHHhh
Confidence 3445688988889999999996522 23344443 346899999996 57999999998775 8999999987654
No 51
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=96.97 E-value=0.00045 Score=50.06 Aligned_cols=45 Identities=9% Similarity=0.112 Sum_probs=32.4
Q ss_pred CCCccEEEecCCChhhcCChHHHHhhcC--CCCcEEechhhHHHHHH
Q psy17634 52 VHHIDAVLLSYPDVAHLGALPYMVGKCG--LSCPIFATIPVYKMGQM 96 (119)
Q Consensus 52 ~~~i~~illTH~H~DH~ggl~~l~~~~~--~~~~v~~~~~~~~~~~~ 96 (119)
.+.|+..+|||+|.||+.|+--=..... .+-.||+.+-+.+.++.
T Consensus 110 ~Q~I~~y~ITH~HLDHIsGlVinSp~~~~qkkkTI~gl~~tIDvL~k 156 (356)
T COG5212 110 RQSINSYFITHAHLDHISGLVINSPDDSKQKKKTIYGLADTIDVLRK 156 (356)
T ss_pred hhhhhheEeccccccchhceeecCccccccCCceEEechhHHHHHHH
Confidence 3679999999999999999843221111 13469999999998543
No 52
>KOG3592|consensus
Probab=96.95 E-value=0.001 Score=53.57 Aligned_cols=56 Identities=29% Similarity=0.450 Sum_probs=43.4
Q ss_pred CCEEEEEeCCeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHh
Q psy17634 18 PPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVG 76 (119)
Q Consensus 18 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~ 76 (119)
+.+.|+..++.+||+|.|..... .++.+-.+..+||+|++||.-.|..+|+..+.+
T Consensus 48 gdaALFavnGf~iLv~GgserKS---~fwklVrHldrVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 48 GDAALFAVNGFNILVNGGSERKS---CFWKLVRHLDRVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred CcceeEeecceEEeecCCccccc---chHHHHHHHhhhhhhhhcccccCccccchHHHH
Confidence 46788888999999999886432 122232356789999999999999999988864
No 53
>KOG1137|consensus
Probab=96.87 E-value=0.0078 Score=47.41 Aligned_cols=109 Identities=14% Similarity=0.061 Sum_probs=72.1
Q ss_pred cEEEEEecCCCCCCCCEEEEEeCCeEEEEecCCCCCc-CHHHH-HHhh---c---CCCCccEEEecCCChhhcCChHHHH
Q psy17634 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMF-SMDFV-KELK---R---HVHHIDAVLLSYPDVAHLGALPYMV 75 (119)
Q Consensus 4 ~m~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~-~~~~~-~~l~---~---~~~~i~~illTH~H~DH~ggl~~l~ 75 (119)
.+|+.+++ ++.+.++|.++-.=.+..|+++|.-... ++... +.+. . -..+.-++.++|.|.||.+.+.++.
T Consensus 150 gIkf~p~~-aGhVlgacMf~veiagv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~vI 228 (668)
T KOG1137|consen 150 GIKFWPYH-AGHVLGACMFMVEIAGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTWVI 228 (668)
T ss_pred CeEEEeec-cchhhhheeeeeeeceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhhhH
Confidence 47788885 8888889875533355788899974322 11111 1111 0 1224577889999999999999987
Q ss_pred hhcCCC-----CcEEechhhHHHHHHhhHHHHhhhhccceeeee
Q psy17634 76 GKCGLS-----CPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLL 114 (119)
Q Consensus 76 ~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (119)
...-.+ .|||+....++++.. +.++|.+..+..+.+++
T Consensus 229 h~~v~rGGR~L~PvFAlgrAqELlli-ldeyw~~h~~l~~iPiy 271 (668)
T KOG1137|consen 229 HSTVPRGGRVLIPVFALGRAQELLLI-LDEYWGNHVDLRDIPIY 271 (668)
T ss_pred HhhccCCCceEeeeeecchHHHHHHH-HHHHhhcchhhhcCcee
Confidence 644334 799999998998777 66677766665555444
No 54
>KOG4736|consensus
Probab=96.06 E-value=0.0059 Score=44.53 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=41.8
Q ss_pred CCCEEEEEeCCeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcCChHHHH
Q psy17634 17 SPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMV 75 (119)
Q Consensus 17 ~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~ 75 (119)
-++..++.+++..+++|+|.+. +..-.....+|+.+++||.+++|.|++..+.
T Consensus 94 ~~~~tl~~d~~~v~v~~~gls~------lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~ 146 (302)
T KOG4736|consen 94 QGQITLVVDGGDVVVVDTGLSV------LAKEGVTLDQIDSVVITHKSPGHLGNNNLFP 146 (302)
T ss_pred hcccceeecCCceEEEecCCch------hhhcCcChhhcceeEEeccCccccccccccc
Confidence 3566788888999999999861 2233346778999999999999999997664
No 55
>KOG1361|consensus
Probab=92.70 E-value=0.052 Score=42.33 Aligned_cols=44 Identities=14% Similarity=0.078 Sum_probs=33.5
Q ss_pred CCCccEEEecCCChhhcCChHHHHhhcCCCCcEEechhhHHHHHHhhH
Q psy17634 52 VHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMY 99 (119)
Q Consensus 52 ~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 99 (119)
.....+-|+||+|.||..|+..-. ...++|++.-++.+....+.
T Consensus 110 ~~~~s~yFLsHFHSDHy~GL~~sW----~~p~lYCS~ita~Lv~~~~~ 153 (481)
T KOG1361|consen 110 IEGCSAYFLSHFHSDHYIGLTKSW----SHPPLYCSPITARLVPLKVS 153 (481)
T ss_pred ccccceeeeecccccccccccccc----cCCcccccccchhhhhhhcc
Confidence 336789999999999988886433 14559999999988665543
No 56
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=89.45 E-value=1.8 Score=31.79 Aligned_cols=75 Identities=7% Similarity=-0.025 Sum_probs=51.8
Q ss_pred CCCCCEEEEEeCCeEEEEecCCCCCc-CHHHHHHhhcCCCCccEEEecCCChhhcCChHHHHhhcCCCCcEEechhh
Q psy17634 15 DESPPCYLLQVDEFKILLDCGWDEMF-SMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPV 90 (119)
Q Consensus 15 ~~~~~~~li~~~~~~iLiD~G~~~~~-~~~~~~~l~~~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~~~ 90 (119)
.++..+++|+..++.+++=....... -...++.+......+++|+.--....|..-+..+.++++ ++++|++++.
T Consensus 17 ~v~~RMTVVrL~~G~L~VhSPvapT~el~~~l~~L~~~~G~VkyIVaPn~~lEH~lfl~~w~~afP-~A~v~~~Pg~ 92 (285)
T PF14234_consen 17 PVPTRMTVVRLSDGGLWVHSPVAPTPELKAELDELEAQHGPVKYIVAPNKGLEHHLFLGPWARAFP-DAKVWAPPGQ 92 (285)
T ss_pred eecceEEEEEECCCCEEEECCCCCCHHHHHHHHHHhccCCceeEEEcCCcchhHHHhHHHHHHHCC-CCEEEeCCCc
Confidence 34567899988755444333332221 123466665567899999998776668888888887885 9999998874
No 57
>KOG3798|consensus
Probab=81.31 E-value=1.8 Score=31.61 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=34.7
Q ss_pred CCCEEEEEeCCeEEEEecCCCCCc-----CHHH---HHHhhcCCCCccEEEecCCChhhcCChH
Q psy17634 17 SPPCYLLQVDEFKILLDCGWDEMF-----SMDF---VKELKRHVHHIDAVLLSYPDVAHLGALP 72 (119)
Q Consensus 17 ~~~~~li~~~~~~iLiD~G~~~~~-----~~~~---~~~l~~~~~~i~~illTH~H~DH~ggl~ 72 (119)
|..|.++..++-.++=|+=+.... ...+ ......+..+++.+++||.|+||.-.-.
T Consensus 87 g~a~~~~~~~g~~~~tdpvf~d~~if~s~gPkry~~pp~~~~~~p~~d~~~vsh~h~dhld~~~ 150 (343)
T KOG3798|consen 87 GHATVLVDLEGVKFVTDPVWADRASFTSFGPKRYRPPPMKLEDLPDLDFAVVSHDHYDHLDADA 150 (343)
T ss_pred cceeEEEeccCcEEecchhhccchhhcccCcccccCCchhhccCCCCceeccccccccccchHH
Confidence 345667766776777666543221 1111 1222346788999999999999986543
No 58
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=44.95 E-value=12 Score=26.50 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=16.0
Q ss_pred CCChhhcCChHHHHhhcCCCCc-EEec
Q psy17634 62 YPDVAHLGALPYMVGKCGLSCP-IFAT 87 (119)
Q Consensus 62 H~H~DH~ggl~~l~~~~~~~~~-v~~~ 87 (119)
|+|.||+-++..+..+. +++ ||.+
T Consensus 42 HSh~~Hl~al~~~a~~~--gv~~V~vH 66 (223)
T PF06415_consen 42 HSHIDHLFALIKLAKKQ--GVKKVYVH 66 (223)
T ss_dssp S--HHHHHHHHHHHHHT--T-SEEEEE
T ss_pred cccHHHHHHHHHHHHHc--CCCEEEEE
Confidence 99999999999888665 443 6553
No 59
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=40.38 E-value=39 Score=27.71 Aligned_cols=38 Identities=24% Similarity=0.193 Sum_probs=28.1
Q ss_pred EEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhcC
Q psy17634 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLG 69 (119)
Q Consensus 29 ~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~g 69 (119)
.+|+|.|..... ...++.+ ....++.|++-|.|+|-.-
T Consensus 421 ~VlvDnGsTeED-ipA~~~~--k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 421 LVLVDNGSTEED-IPAIKQL--KAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred EEEEcCCCcccc-cHHHHHH--HhcCCCEEEEcCCCCcchh
Confidence 689999986543 3445555 4567899999999999765
No 60
>KOG1251|consensus
Probab=37.58 E-value=47 Score=24.40 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=29.1
Q ss_pred CCCCccEEEecCCChhhcCChHHHHhhcCCCCcEEechhhH
Q psy17634 51 HVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVY 91 (119)
Q Consensus 51 ~~~~i~~illTH~H~DH~ggl~~l~~~~~~~~~v~~~~~~~ 91 (119)
....+|++|+.=.----..|.....+.+.++++||+-+|..
T Consensus 170 qVg~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~ 210 (323)
T KOG1251|consen 170 QVGEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEA 210 (323)
T ss_pred hhCccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcc
Confidence 45589999999776555555555555555789999977743
No 61
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=36.37 E-value=76 Score=22.60 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=32.7
Q ss_pred CCeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCC
Q psy17634 26 DEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYP 63 (119)
Q Consensus 26 ~~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~ 63 (119)
..+.||+|.=.......+.++.+......+|.|++|=+
T Consensus 46 ~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iTAA 83 (224)
T COG4565 46 KPDLILLDIYMPDGNGIELLPELRSQHYPVDVIVITAA 83 (224)
T ss_pred CCCEEEEeeccCCCccHHHHHHHHhcCCCCCEEEEecc
Confidence 45789999988888888888999888889999999965
No 62
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=33.06 E-value=1e+02 Score=23.81 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=23.7
Q ss_pred eEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCC
Q psy17634 28 FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPD 64 (119)
Q Consensus 28 ~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H 64 (119)
....+++.|....+.+.++..-....++++|.++|..
T Consensus 105 ~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~E 141 (383)
T COG0075 105 EVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNE 141 (383)
T ss_pred ceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEecc
Confidence 4556666666555544444433356689999999875
No 63
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=27.82 E-value=2.2e+02 Score=20.04 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=21.5
Q ss_pred CeEEEEecCCCCCcC-------HHHHHHhhcCCCCccEEEecCC
Q psy17634 27 EFKILLDCGWDEMFS-------MDFVKELKRHVHHIDAVLLSYP 63 (119)
Q Consensus 27 ~~~iLiD~G~~~~~~-------~~~~~~l~~~~~~i~~illTH~ 63 (119)
...-|+|++..+..- .+.++.++... .++..|+|-+
T Consensus 113 ~g~rLvD~p~fP~ey~~~A~~~ae~L~~Lr~~~-~l~WTfvSPa 155 (211)
T COG2910 113 EGTRLVDTPDFPAEYKPEALAQAEFLDSLRAEK-SLDWTFVSPA 155 (211)
T ss_pred CCceeecCCCCchhHHHHHHHHHHHHHHHhhcc-CcceEEeCcH
Confidence 337788887654321 12355555443 4999999954
No 64
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=26.18 E-value=1.9e+02 Score=20.33 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=28.1
Q ss_pred CeEEEEecCCCCCcCHHHHHHhhcCCCCccEEEecCCChhhc
Q psy17634 27 EFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHL 68 (119)
Q Consensus 27 ~~~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illTH~H~DH~ 68 (119)
..++|+|.........+..+.+......+--||+| +|-|==
T Consensus 49 pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfiT-GhgDIp 89 (202)
T COG4566 49 PGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLT-GHGDIP 89 (202)
T ss_pred CCeEEEecCCCCCchHHHHHHHHhcCCCCCEEEEe-CCCChH
Confidence 46899998876555555556666666677778888 775543
No 65
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=25.55 E-value=1.1e+02 Score=21.25 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=15.2
Q ss_pred EEEEEeCCeEEEEecCCCCC
Q psy17634 20 CYLLQVDEFKILLDCGWDEM 39 (119)
Q Consensus 20 ~~li~~~~~~iLiD~G~~~~ 39 (119)
+.+|+.+++..|+|+|....
T Consensus 90 ~liV~~~~~~ylvDvGfG~~ 109 (240)
T PF00797_consen 90 VLIVTLDGERYLVDVGFGGP 109 (240)
T ss_dssp EEEEEETTEEEEE-SSSTTC
T ss_pred EEEEEECCEEEEEeccCCCc
Confidence 45667899999999998654
No 66
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=25.08 E-value=1.2e+02 Score=17.60 Aligned_cols=33 Identities=9% Similarity=0.282 Sum_probs=16.8
Q ss_pred EEEEecCCCCCcCHHHHHHhhcCCCCccEEEec
Q psy17634 29 KILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61 (119)
Q Consensus 29 ~iLiD~G~~~~~~~~~~~~l~~~~~~i~~illT 61 (119)
.+++|...........++.++....++.-|++|
T Consensus 46 ~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 46 LIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred EEEEEeeeccccccccccccccccccccEEEec
Confidence 566665554433334444444444555556666
No 67
>TIGR03380 agmatine_aguA agmatine deiminase. Members of this family are agmatine deiminase (3.5.3.12), as characterized in Pseudomonas aeruginosa and plants. Related deiminases include the peptidyl-arginine deiminase (3.5.3.15) as found in Porphyromonas gingivalis.
Probab=24.12 E-value=92 Score=23.70 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=11.7
Q ss_pred CCCEEEEEeCCeEEEEecCCCCCcCHHH
Q psy17634 17 SPPCYLLQVDEFKILLDCGWDEMFSMDF 44 (119)
Q Consensus 17 ~~~~~li~~~~~~iLiD~G~~~~~~~~~ 44 (119)
.|..+++.++ ..|++...++..+...
T Consensus 156 dG~GtlltTe--~clln~nRNP~ls~~e 181 (357)
T TIGR03380 156 DGEGTLLTTE--ECLLSEGRNPHLTKEQ 181 (357)
T ss_pred CCCeeEEEEh--hhhcCCCCCCCCCHHH
Confidence 3444555432 2344554555555443
No 68
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=22.39 E-value=65 Score=21.78 Aligned_cols=10 Identities=10% Similarity=0.311 Sum_probs=5.2
Q ss_pred ccEEEecCCC
Q psy17634 55 IDAVLLSYPD 64 (119)
Q Consensus 55 i~~illTH~H 64 (119)
.|-++.-|.|
T Consensus 110 ~Dvli~GHTH 119 (172)
T COG0622 110 ADVLIFGHTH 119 (172)
T ss_pred CCEEEECCCC
Confidence 4445555555
No 69
>PF05585 DUF1758: Putative peptidase (DUF1758); InterPro: IPR008737 This is a family of nematode proteins of unknown function []. However, it seems likely that these proteins act as aspartic peptidases.
Probab=21.95 E-value=1.2e+02 Score=19.76 Aligned_cols=29 Identities=21% Similarity=0.246 Sum_probs=17.1
Q ss_pred eEEEEecCCCCCcCHH-HHHHhhcCCCCcc
Q psy17634 28 FKILLDCGWDEMFSMD-FVKELKRHVHHID 56 (119)
Q Consensus 28 ~~iLiD~G~~~~~~~~-~~~~l~~~~~~i~ 56 (119)
..+|+|+|...++... ..+.++......+
T Consensus 13 ~~~LlDsGSq~SfIt~~la~~L~L~~~~~~ 42 (164)
T PF05585_consen 13 ARALLDSGSQRSFITESLANKLNLPGTGEK 42 (164)
T ss_pred EEEEEecCCchhHHhHHHHHHhCCCCCCce
Confidence 4689999997766432 3455544433333
No 70
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=21.19 E-value=47 Score=24.36 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=12.7
Q ss_pred EEEecC------CChhhcCChHHH
Q psy17634 57 AVLLSY------PDVAHLGALPYM 74 (119)
Q Consensus 57 ~illTH------~H~DH~ggl~~l 74 (119)
.|++|| .|+||+.--...
T Consensus 123 dvVvT~d~~GgygHpDH~~v~~a~ 146 (283)
T TIGR03446 123 HVITTYDENGGYPHPDHIMCHEVS 146 (283)
T ss_pred EEEEecCCCCCCCChhHHHHHHHH
Confidence 378888 599998654443
No 71
>PRK13551 agmatine deiminase; Provisional
Probab=20.05 E-value=1.4e+02 Score=22.83 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=19.8
Q ss_pred CCCCEEEEEeCCeEEEEecCCCCCcCHHHHH-HhhcCCCCccEEEecCC
Q psy17634 16 ESPPCYLLQVDEFKILLDCGWDEMFSMDFVK-ELKRHVHHIDAVLLSYP 63 (119)
Q Consensus 16 ~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~-~l~~~~~~i~~illTH~ 63 (119)
..|..+++.++. .|++...++..+...++ .++....--+.|+|-|.
T Consensus 158 ~DG~GtlltTe~--clln~nRNP~ls~~~ie~~Lk~~LGv~kvIWL~~g 204 (362)
T PRK13551 158 VDGEGTLLTTEE--CLLNPNRNPHLTKEQIEQLLRDYLGVEKVIWLPDG 204 (362)
T ss_pred ECCCeEEEEEhh--hhcCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCC
Confidence 334555554332 34455555555544432 23322222234555443
Done!