Your job contains 1 sequence.
>psy17634
MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL
SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLELA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy17634
(119 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1SD85 - symbol:CPSF2 "Uncharacterized protein"... 433 9.6e-41 1
UNIPROTKB|F1NMN0 - symbol:CPSF2 "Uncharacterized protein"... 435 3.4e-40 1
FB|FBgn0027873 - symbol:Cpsf100 "Cleavage and polyadenyla... 433 4.9e-40 1
UNIPROTKB|Q10568 - symbol:CPSF2 "Cleavage and polyadenyla... 433 5.6e-40 1
UNIPROTKB|E2R496 - symbol:CPSF2 "Uncharacterized protein"... 433 5.6e-40 1
UNIPROTKB|Q9P2I0 - symbol:CPSF2 "Cleavage and polyadenyla... 433 5.6e-40 1
ZFIN|ZDB-GENE-040718-79 - symbol:cpsf2 "cleavage and poly... 433 5.9e-40 1
MGI|MGI:1861601 - symbol:Cpsf2 "cleavage and polyadenylat... 425 4.2e-39 1
RGD|1309687 - symbol:Cpsf2 "cleavage and polyadenylation ... 425 4.2e-39 1
UNIPROTKB|Q9W799 - symbol:cpsf2 "Cleavage and polyadenyla... 421 1.1e-38 1
WB|WBGene00017313 - symbol:cpsf-2 species:6239 "Caenorhab... 351 5.2e-31 1
UNIPROTKB|O17403 - symbol:cpsf-2 "Probable cleavage and p... 351 5.2e-31 1
UNIPROTKB|G3V3T7 - symbol:CPSF2 "Cleavage and polyadenyla... 313 5.0e-28 1
DICTYBASE|DDB_G0270392 - symbol:cpsf2 "cleavage and polya... 303 6.4e-26 1
TAIR|locus:2172843 - symbol:CPSF100 "cleavage and polyade... 263 1.1e-21 1
UNIPROTKB|G3V5T3 - symbol:CPSF2 "Cleavage and polyadenyla... 190 5.4e-15 1
UNIPROTKB|G4N6C6 - symbol:MGG_06570 "Uncharacterized prot... 142 1.5e-08 1
ASPGD|ASPL0000040420 - symbol:AN3082 species:162425 "Emer... 131 2.4e-07 1
FB|FBgn0039691 - symbol:IntS11 "Integrator 11" species:72... 126 4.2e-07 1
ZFIN|ZDB-GENE-050522-13 - symbol:cpsf3l "cleavage and pol... 123 8.9e-07 1
UNIPROTKB|E9PIL7 - symbol:CPSF3L "Integrator complex subu... 109 2.1e-06 1
UNIPROTKB|E9PNS4 - symbol:CPSF3L "Integrator complex subu... 112 3.8e-06 1
DICTYBASE|DDB_G0274799 - symbol:cpsf3 "cleavage and polya... 117 5.4e-06 1
UNIPROTKB|C9J979 - symbol:CPSF3L "Integrator complex subu... 112 5.8e-06 1
UNIPROTKB|F1RJE8 - symbol:CPSF3L "Uncharacterized protein... 115 6.4e-06 1
MGI|MGI:1919207 - symbol:Cpsf3l "cleavage and polyadenyla... 115 6.4e-06 1
RGD|1306841 - symbol:Cpsf3l "cleavage and polyadenylation... 115 6.4e-06 1
UNIPROTKB|E1B7Q9 - symbol:CPSF3L "Integrator complex subu... 114 8.1e-06 1
UNIPROTKB|F1NV30 - symbol:CPSF3L "Integrator complex subu... 114 8.2e-06 1
UNIPROTKB|Q5ZIH0 - symbol:CPSF3L "Integrator complex subu... 114 8.2e-06 1
UNIPROTKB|Q5TA45 - symbol:CPSF3L "Integrator complex subu... 112 1.3e-05 1
UNIPROTKB|Q2YDM2 - symbol:CPSF3L "Integrator complex subu... 110 2.2e-05 1
UNIPROTKB|E2QY53 - symbol:CPSF3L "Uncharacterized protein... 110 2.2e-05 1
UNIPROTKB|E9PI75 - symbol:CPSF3L "Integrator complex subu... 99 5.3e-05 1
UNIPROTKB|E9PQF0 - symbol:CPSF3L "Integrator complex subu... 95 7.2e-05 1
UNIPROTKB|E9PIG1 - symbol:CPSF3L "Integrator complex subu... 99 8.1e-05 1
WB|WBGene00008642 - symbol:F10B5.8 species:6239 "Caenorha... 104 9.9e-05 1
DICTYBASE|DDB_G0278189 - symbol:ints11 "integrator comple... 105 9.9e-05 1
POMBASE|SPBC1709.15c - symbol:cft2 "cleavage factor two C... 101 0.00029 1
UNIPROTKB|Q9KV92 - symbol:VC_0264 "Putative uncharacteriz... 98 0.00029 1
TIGR_CMR|VC_0264 - symbol:VC_0264 "conserved hypothetical... 98 0.00029 1
UNIPROTKB|G3V1S5 - symbol:CPSF3L "Integrator complex subu... 99 0.00034 1
FB|FBgn0036570 - symbol:IntS9 "Integrator 9" species:7227... 71 0.00048 2
SGD|S000004267 - symbol:YSH1 "Putative endoribonuclease" ... 98 0.00059 1
>UNIPROTKB|F1SD85 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006379
"mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA polyadenylation"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
InterPro:IPR022712 PANTHER:PTHR11203:SF5 Pfam:PF10996 SMART:SM01027
GeneTree:ENSGT00700000104551 EMBL:CU468363
Ensembl:ENSSSCT00000002717 OMA:GANDESP Uniprot:F1SD85
Length = 385
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 79/108 (73%), Positives = 92/108 (85%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDT 108
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNT 108
>UNIPROTKB|F1NMN0 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0006398 "histone mRNA 3'-end processing" evidence=IEA]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK GO:GO:0006398
EMBL:AADN02003653 IPI:IPI00651282 Ensembl:ENSGALT00000017538
Uniprot:F1NMN0
Length = 782
Score = 435 (158.2 bits), Expect = 3.4e-40, P = 3.4e-40
Identities = 79/108 (73%), Positives = 92/108 (85%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + LK+HVH +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLKKHVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDT 108
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNT 108
>FB|FBgn0027873 [details] [associations]
symbol:Cpsf100 "Cleavage and polyadenylation specificity
factor 100" species:7227 "Drosophila melanogaster" [GO:0006379
"mRNA cleavage" evidence=ISS;NAS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS;IMP;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=NAS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006398 "histone mRNA 3'-end
processing" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE014297 GO:GO:0022008 GO:GO:0006378
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 GO:GO:0006379
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 OMA:NNPFQFK
GO:GO:0006398 EMBL:AF160933 RefSeq:NP_651658.1 RefSeq:NP_733264.1
UniGene:Dm.1362 ProteinModelPortal:Q9V3D6 SMR:Q9V3D6 IntAct:Q9V3D6
STRING:Q9V3D6 PaxDb:Q9V3D6 PRIDE:Q9V3D6 EnsemblMetazoa:FBtr0085357
GeneID:43426 KEGG:dme:Dmel_CG1957 UCSC:CG1957-RA CTD:43426
FlyBase:FBgn0027873 InParanoid:Q8IML7 OrthoDB:EOG4XD261
PhylomeDB:Q9V3D6 GenomeRNAi:43426 NextBio:833860 Bgee:Q9V3D6
GermOnline:CG1957 Uniprot:Q9V3D6
Length = 756
Score = 433 (157.5 bits), Expect = 4.9e-40, P = 4.9e-40
Identities = 75/107 (70%), Positives = 93/107 (86%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ ++SG MDESPPCY+LQ+D+ +ILLDCGWDE F +F+KELKR VH +DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLGALPY+VGK GL+CPI+ATIPV+KMGQMFMYDL+ ++
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFN 107
>UNIPROTKB|Q10568 [details] [associations]
symbol:CPSF2 "Cleavage and polyadenylation specificity
factor subunit 2" species:9913 "Bos taurus" [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISS] [GO:0005847 "mRNA cleavage
and polyadenylation specificity factor complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343 OMA:NNPFQFK
EMBL:X75931 IPI:IPI00688446 PIR:A56351 RefSeq:NP_787002.1
UniGene:Bt.4077 ProteinModelPortal:Q10568 STRING:Q10568
PRIDE:Q10568 Ensembl:ENSBTAT00000013500 GeneID:327689
KEGG:bta:327689 CTD:53981 HOVERGEN:HBG051106 InParanoid:Q10568
OrthoDB:EOG4MCWZQ NextBio:20810154 GO:GO:0006398 Uniprot:Q10568
Length = 782
Score = 433 (157.5 bits), Expect = 5.6e-40, P = 5.6e-40
Identities = 79/108 (73%), Positives = 92/108 (85%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDT 108
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNT 108
>UNIPROTKB|E2R496 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006398 "histone mRNA 3'-end processing"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 GO:GO:0005847 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK CTD:53981 GO:GO:0006398
EMBL:AAEX03005582 RefSeq:XP_537353.2 ProteinModelPortal:E2R496
Ensembl:ENSCAFT00000017381 GeneID:480230 KEGG:cfa:480230
NextBio:20855279 Uniprot:E2R496
Length = 782
Score = 433 (157.5 bits), Expect = 5.6e-40, P = 5.6e-40
Identities = 79/108 (73%), Positives = 92/108 (85%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDT 108
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNT 108
>UNIPROTKB|Q9P2I0 [details] [associations]
symbol:CPSF2 "Cleavage and polyadenylation specificity
factor subunit 2" species:9606 "Homo sapiens" [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
EMBL:CH471061 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0016787
GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0005847
GO:GO:0006369 eggNOG:COG1236 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 Reactome:REACT_78
HOGENOM:HOG000264343 OMA:NNPFQFK CTD:53981 HOVERGEN:HBG051106
OrthoDB:EOG4MCWZQ GO:GO:0006398 EMBL:AK001627 EMBL:BC070095
EMBL:AB037788 EMBL:AL442079 IPI:IPI00419531 RefSeq:NP_059133.1
UniGene:Hs.657632 UniGene:Hs.736541 ProteinModelPortal:Q9P2I0
SMR:Q9P2I0 DIP:DIP-42500N IntAct:Q9P2I0 MINT:MINT-1697677
STRING:Q9P2I0 PhosphoSite:Q9P2I0 DMDM:51338827 PaxDb:Q9P2I0
PeptideAtlas:Q9P2I0 PRIDE:Q9P2I0 Ensembl:ENST00000298875
GeneID:53981 KEGG:hsa:53981 UCSC:uc001yah.2 GeneCards:GC14P092588
HGNC:HGNC:2325 HPA:HPA024238 MIM:606028 neXtProt:NX_Q9P2I0
PharmGKB:PA26842 InParanoid:Q9P2I0 PhylomeDB:Q9P2I0 ChiTaRS:CPSF2
GenomeRNAi:53981 NextBio:56268 ArrayExpress:Q9P2I0 Bgee:Q9P2I0
CleanEx:HS_CPSF2 Genevestigator:Q9P2I0 GermOnline:ENSG00000165934
Uniprot:Q9P2I0
Length = 782
Score = 433 (157.5 bits), Expect = 5.6e-40, P = 5.6e-40
Identities = 79/108 (73%), Positives = 92/108 (85%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDT 108
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNT 108
>ZFIN|ZDB-GENE-040718-79 [details] [associations]
symbol:cpsf2 "cleavage and polyadenylation specific
factor 2" species:7955 "Danio rerio" [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 ZFIN:ZDB-GENE-040718-79 GO:GO:0016787
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 HOGENOM:HOG000264343 CTD:53981 HOVERGEN:HBG051106
OrthoDB:EOG4MCWZQ EMBL:BC076029 IPI:IPI00512505
RefSeq:NP_001002384.1 UniGene:Dr.121547 ProteinModelPortal:Q6DHE5
STRING:Q6DHE5 PRIDE:Q6DHE5 GeneID:436657 KEGG:dre:436657
InParanoid:Q6DHE5 NextBio:20831102 ArrayExpress:Q6DHE5 Bgee:Q6DHE5
Uniprot:Q6DHE5
Length = 790
Score = 433 (157.5 bits), Expect = 5.9e-40, P = 5.9e-40
Identities = 79/108 (73%), Positives = 92/108 (85%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + LKR+VH +DAVLL
Sbjct: 1 MTSIIKLTALSGVQEESALCYLLQVDEFRFLLDCGWDETFSMDIIDSLKRYVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDT 108
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T
Sbjct: 61 SHPDHVHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRHNT 108
>MGI|MGI:1861601 [details] [associations]
symbol:Cpsf2 "cleavage and polyadenylation specific factor
2" species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 MGI:MGI:1861601
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343 OMA:NNPFQFK
CTD:53981 HOVERGEN:HBG051106 OrthoDB:EOG4MCWZQ GO:GO:0006398
EMBL:AF012822 EMBL:BC013628 EMBL:BC007163 IPI:IPI00314302
RefSeq:NP_058552.1 UniGene:Mm.716 ProteinModelPortal:O35218
SMR:O35218 STRING:O35218 PhosphoSite:O35218 PaxDb:O35218
PRIDE:O35218 Ensembl:ENSMUST00000047357 GeneID:51786 KEGG:mmu:51786
UCSC:uc007otx.2 InParanoid:O35218 NextBio:308008 Bgee:O35218
CleanEx:MM_CPSF2 Genevestigator:O35218
GermOnline:ENSMUSG00000041781 Uniprot:O35218
Length = 782
Score = 425 (154.7 bits), Expect = 4.2e-39, P = 4.2e-39
Identities = 77/108 (71%), Positives = 92/108 (85%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FS+D + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDT 108
S+PD HLGALP+ VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNT 108
>RGD|1309687 [details] [associations]
symbol:Cpsf2 "cleavage and polyadenylation specific factor 2,
100kDa" species:10116 "Rattus norvegicus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA;ISO] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006398 "histone mRNA
3'-end processing" evidence=IEA;ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 RGD:1309687 GO:GO:0016787
EMBL:CH473982 GO:GO:0005847 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK CTD:53981
OrthoDB:EOG4MCWZQ GO:GO:0006398 IPI:IPI00189534
RefSeq:NP_001100223.1 UniGene:Rn.8038 Ensembl:ENSRNOT00000008612
GeneID:299256 KEGG:rno:299256 UCSC:RGD:1309687 NextBio:645098
Uniprot:D3Z9E6
Length = 782
Score = 425 (154.7 bits), Expect = 4.2e-39, P = 4.2e-39
Identities = 77/108 (71%), Positives = 92/108 (85%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FS+D + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDT 108
S+PD HLGALP+ VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNT 108
>UNIPROTKB|Q9W799 [details] [associations]
symbol:cpsf2 "Cleavage and polyadenylation specificity
factor subunit 2" species:8355 "Xenopus laevis" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005737 GO:GO:0006397
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
CTD:53981 HOVERGEN:HBG051106 EMBL:AF139986 RefSeq:NP_001081123.1
UniGene:Xl.3876 ProteinModelPortal:Q9W799 GeneID:394394
KEGG:xla:394394 Xenbase:XB-GENE-950598 Uniprot:Q9W799
Length = 783
Score = 421 (153.3 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 76/108 (70%), Positives = 91/108 (84%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+L G +ES CYLLQVDEF+ LLDCGWDE FSMD + +K++VH +DAVLL
Sbjct: 1 MTSIIKLTTLVGAQEESAVCYLLQVDEFRFLLDCGWDENFSMDIIDSVKKYVHQVDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDT 108
S+PD HLGALPY VGK GL+C I+ATIPVYKMGQMFMYDL+Q R++T
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNT 108
>WB|WBGene00017313 [details] [associations]
symbol:cpsf-2 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0016246
"RNA interference" evidence=IMP] [GO:0040027 "negative regulation
of vulval development" evidence=IMP] InterPro:IPR001279
InterPro:IPR027075 SMART:SM00849 Pfam:PF07521 GO:GO:0005634
GO:GO:0009792 GO:GO:0016246 GO:GO:0006397 GO:GO:0003723
GO:GO:0016787 GO:GO:0000910 GO:GO:0040035 GO:GO:0040027
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343
OMA:NNPFQFK EMBL:FO080529 PIR:T32487 RefSeq:NP_504822.1
ProteinModelPortal:O17403 SMR:O17403 STRING:O17403 PaxDb:O17403
EnsemblMetazoa:F09G2.4 GeneID:179103 KEGG:cel:CELE_F09G2.4
CTD:179103 WormBase:F09G2.4 InParanoid:O17403 NextBio:903938
Uniprot:O17403
Length = 843
Score = 351 (128.6 bits), Expect = 5.2e-31, P = 5.2e-31
Identities = 64/107 (59%), Positives = 78/107 (72%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ SG DE P CYLLQVD ILLDCGWDE F + + +ELK + I AVL+
Sbjct: 1 MTSIIKLKVFSGAKDEGPLCYLLQVDGDYILLDCGWDERFGLQYFEELKPFIPKISAVLI 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLG LPY+V KCGL+ P++AT+PVYKMGQMF+YD+ D
Sbjct: 61 SHPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMVYSHLD 107
>UNIPROTKB|O17403 [details] [associations]
symbol:cpsf-2 "Probable cleavage and polyadenylation
specificity factor subunit 2" species:6239 "Caenorhabditis elegans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001279
InterPro:IPR027075 SMART:SM00849 Pfam:PF07521 GO:GO:0005634
GO:GO:0009792 GO:GO:0016246 GO:GO:0006397 GO:GO:0003723
GO:GO:0016787 GO:GO:0000910 GO:GO:0040035 GO:GO:0040027
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343
OMA:NNPFQFK EMBL:FO080529 PIR:T32487 RefSeq:NP_504822.1
ProteinModelPortal:O17403 SMR:O17403 STRING:O17403 PaxDb:O17403
EnsemblMetazoa:F09G2.4 GeneID:179103 KEGG:cel:CELE_F09G2.4
CTD:179103 WormBase:F09G2.4 InParanoid:O17403 NextBio:903938
Uniprot:O17403
Length = 843
Score = 351 (128.6 bits), Expect = 5.2e-31, P = 5.2e-31
Identities = 64/107 (59%), Positives = 78/107 (72%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+ SG DE P CYLLQVD ILLDCGWDE F + + +ELK + I AVL+
Sbjct: 1 MTSIIKLKVFSGAKDEGPLCYLLQVDGDYILLDCGWDERFGLQYFEELKPFIPKISAVLI 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
S+PD HLG LPY+V KCGL+ P++AT+PVYKMGQMF+YD+ D
Sbjct: 61 SHPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMVYSHLD 107
>UNIPROTKB|G3V3T7 [details] [associations]
symbol:CPSF2 "Cleavage and polyadenylation-specificity
factor subunit 2" species:9606 "Homo sapiens" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 GO:GO:0016787 PANTHER:PTHR11203:SF5 HGNC:HGNC:2325
ChiTaRS:CPSF2 EMBL:AL121773 ProteinModelPortal:G3V3T7 SMR:G3V3T7
Ensembl:ENST00000553427 ArrayExpress:G3V3T7 Bgee:G3V3T7
Uniprot:G3V3T7
Length = 80
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 58/80 (72%), Positives = 66/80 (82%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L++HVH IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGL 80
S+PD HLGALPY VGK GL
Sbjct: 61 SHPDPLHLGALPYAVGKLGL 80
>DICTYBASE|DDB_G0270392 [details] [associations]
symbol:cpsf2 "cleavage and polyadenylation
specificity factor 100 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA;ISS] [GO:0006378 "mRNA
polyadenylation" evidence=IEA;ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA;ISS]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0270392 Pfam:PF07521 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006378 GO:GO:0003723 GO:GO:0016787
GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
OMA:NNPFQFK RefSeq:XP_646760.1 ProteinModelPortal:Q55BS1
STRING:Q55BS1 EnsemblProtists:DDB0233700 GeneID:8617733
KEGG:ddi:DDB_G0270392 ProtClustDB:CLSZ2431463 Uniprot:Q55BS1
Length = 784
Score = 303 (111.7 bits), Expect = 6.4e-26, P = 6.4e-26
Identities = 57/103 (55%), Positives = 73/103 (70%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M SIIK T+LSG DESPPCYLL++D+F ILLDCG ++ L++ IDAVLL
Sbjct: 1 MASIIKFTALSGAKDESPPCYLLEIDDFCILLDCGLSYNLDFSLLEPLEKVAKKIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQ 103
S+ D H+G LPY+VGK GL+ I+ T PV KMG MF+YDL++
Sbjct: 61 SHSDTTHIGGLPYVVGKYGLTGTIYGTTPVLKMGTMFLYDLYE 103
>TAIR|locus:2172843 [details] [associations]
symbol:CPSF100 "cleavage and polyadenylation specificity
factor 100" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009793 "embryo development ending
in seed dormancy" evidence=NAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS;NAS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006306 "DNA methylation" evidence=RCA] [GO:0006342 "chromatin
silencing" evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0007267 "cell-cell
signaling" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 GO:GO:0009506 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006378 EMBL:AB005244 GO:GO:0003723
GO:GO:0016787 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 EMBL:AF283277 EMBL:AY034982
EMBL:BT004374 IPI:IPI00521104 RefSeq:NP_197776.1 UniGene:At.25191
ProteinModelPortal:Q9LKF9 SMR:Q9LKF9 IntAct:Q9LKF9 STRING:Q9LKF9
PaxDb:Q9LKF9 PRIDE:Q9LKF9 EnsemblPlants:AT5G23880.1 GeneID:832453
KEGG:ath:AT5G23880 TAIR:At5g23880 HOGENOM:HOG000264343
InParanoid:Q9LKF9 OMA:NNPFQFK PhylomeDB:Q9LKF9
ProtClustDB:CLSN2686300 Genevestigator:Q9LKF9 GermOnline:AT5G23880
GO:GO:0035194 Uniprot:Q9LKF9
Length = 739
Score = 263 (97.6 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 47/105 (44%), Positives = 71/105 (67%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
M + +++T L G +E+P YL+ +D F L+DCGW+++F ++ L R IDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRVASTIDAVLL 60
Query: 61 SYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
S+PD H+GALPY + + GLS P++AT PV+++G + MYD F R
Sbjct: 61 SHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSR 105
>UNIPROTKB|G3V5T3 [details] [associations]
symbol:CPSF2 "Cleavage and polyadenylation-specificity
factor subunit 2" species:9606 "Homo sapiens" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] InterPro:IPR027075
PANTHER:PTHR11203:SF5 HGNC:HGNC:2325 ChiTaRS:CPSF2 EMBL:AL121773
ProteinModelPortal:G3V5T3 SMR:G3V5T3 Ensembl:ENST00000554290
ArrayExpress:G3V5T3 Bgee:G3V5T3 Uniprot:G3V5T3
Length = 62
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 38/61 (62%), Positives = 46/61 (75%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
MTSIIK+T+LSG +ES CYLLQVDEF+ LLDCGWDE FSMD + L R++ I +L
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSL-RNLDTIQKILH 59
Query: 61 S 61
S
Sbjct: 60 S 60
>UNIPROTKB|G4N6C6 [details] [associations]
symbol:MGG_06570 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0005849 "mRNA cleavage factor complex"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0006379 "mRNA cleavage" evidence=ISS] InterPro:IPR027075
Pfam:PF07521 GO:GO:0006378 EMBL:CM001234 GO:GO:0005847
GO:GO:0006379 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 RefSeq:XP_003716967.1 EnsemblFungi:MGG_06570T0
GeneID:2684725 KEGG:mgr:MGG_06570 Uniprot:G4N6C6
Length = 962
Score = 142 (55.0 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 33/97 (34%), Positives = 55/97 (56%)
Query: 10 LSGTMDESPPCY-LLQVDE-FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAH 67
L G + E+ LL++D K+L+D GWDE F ++ +KE+++ V + +LL++ V H
Sbjct: 7 LQGALSEATASQSLLELDGGVKVLIDIGWDETFDVEKLKEVEKQVPTLSLILLTHATVPH 66
Query: 68 LGALPYMVGKCGLSC--PIFATIPVYKMGQMFMYDLF 102
L AL + L PI+AT P +G+ + DL+
Sbjct: 67 LSALVHCCKNFPLFARIPIYATQPAIDLGRTLIQDLY 103
>ASPGD|ASPL0000040420 [details] [associations]
symbol:AN3082 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR027075 EMBL:BN001306 EMBL:AACD01000051 eggNOG:COG1236
KO:K14402 OrthoDB:EOG4WWVSN InterPro:IPR022712 InterPro:IPR025069
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
OMA:YSQPHQP RefSeq:XP_660686.1 EnsemblFungi:CADANIAT00009996
GeneID:2874210 KEGG:ani:AN3082.2 HOGENOM:HOG000196366
Uniprot:Q5B8P8
Length = 1005
Score = 131 (51.2 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 29/86 (33%), Positives = 52/86 (60%)
Query: 22 LLQVDE-FKILLDCGWDEMFS-MDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79
+L++D KIL+D GWD+ F +D V EL++HV + +LL++ +H+GA +
Sbjct: 21 ILELDGGVKILVDVGWDDTFDPLDLV-ELEKHVSTLSLILLTHATPSHIGAYVHCCKTFP 79
Query: 80 L--SCPIFATIPVYKMGQMFMYDLFQ 103
L P++AT PV +G+ + D+++
Sbjct: 80 LFTQIPVYATSPVIALGRTLLQDVYE 105
>FB|FBgn0039691 [details] [associations]
symbol:IntS11 "Integrator 11" species:7227 "Drosophila
melanogaster" [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0034472 "snRNA
3'-end processing" evidence=IDA] [GO:0016180 "snRNA processing"
evidence=ISS] [GO:0032039 "integrator complex" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001279
SMART:SM00849 Pfam:PF07521 EMBL:AE014297 GO:GO:0022008
GO:GO:0006378 GO:GO:0016787 GO:GO:0005847 GO:GO:0006379
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
GO:GO:0034472 EMBL:AY061097 RefSeq:NP_651721.1 UniGene:Dm.3722
SMR:Q9VAH9 STRING:Q9VAH9 EnsemblMetazoa:FBtr0085476 GeneID:43506
KEGG:dme:Dmel_CG1972 UCSC:CG1972-RA CTD:43506 FlyBase:FBgn0039691
InParanoid:Q9VAH9 OrthoDB:EOG47D7X3 GenomeRNAi:43506 NextBio:834295
Uniprot:Q9VAH9
Length = 597
Score = 126 (49.4 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 36/107 (33%), Positives = 51/107 (47%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDFVKELKRH--VHHIDA 57
IK+T L D C LL + I+LDCG DE DF + HID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
V++S+ + H GALPYM G + PI+ T P + + + D+ +V
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKV 110
>ZFIN|ZDB-GENE-050522-13 [details] [associations]
symbol:cpsf3l "cleavage and polyadenylation specific
factor 3-like" species:7955 "Danio rerio" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
ZFIN:ZDB-GENE-050522-13 GO:GO:0016787 GO:GO:0043484
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:MAVEYMS GeneTree:ENSGT00700000104485 EMBL:CABZ01054885
EMBL:CR846089 IPI:IPI00865509 Ensembl:ENSDART00000102902
Uniprot:E7EXW1
Length = 601
Score = 123 (48.4 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 32/110 (29%), Positives = 51/110 (46%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
IK+T L D C L+ + I+LDCG F+ D ++ + R +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPYM G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVD 113
>UNIPROTKB|E9PIL7 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 GO:GO:0016787 EMBL:AL139287
HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00977321
ProteinModelPortal:E9PIL7 SMR:E9PIL7 Ensembl:ENST00000534345
ArrayExpress:E9PIL7 Bgee:E9PIL7 Uniprot:E9PIL7
Length = 140
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 30/111 (27%), Positives = 51/111 (45%)
Query: 5 IKMTSLSGT-MDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHID 56
I++T L G D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLVGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 63
Query: 57 AVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 114
>UNIPROTKB|E9PNS4 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00984775
ProteinModelPortal:E9PNS4 SMR:E9PNS4 Ensembl:ENST00000528879
ArrayExpress:E9PNS4 Bgee:E9PNS4 Uniprot:E9PNS4
Length = 278
Score = 112 (44.5 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 29/110 (26%), Positives = 50/110 (45%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>DICTYBASE|DDB_G0274799 [details] [associations]
symbol:cpsf3 "cleavage and polyadenylation
specificity factor 73 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IC] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0274799 Pfam:PF07521 GO:GO:0046872 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000012 GO:GO:0003730
GO:GO:0004519 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
RefSeq:XP_643926.1 ProteinModelPortal:Q86A79 SMR:Q86A79
STRING:Q86A79 EnsemblProtists:DDB0233696 GeneID:8619353
KEGG:ddi:DDB_G0274799 ProtClustDB:CLSZ2431003 Uniprot:Q86A79
Length = 774
Score = 117 (46.2 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 28/105 (26%), Positives = 51/105 (48%)
Query: 4 IIKMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDAVL 59
I+++T + + C LL+ K++ DCG + + S+ F ++ + ID +L
Sbjct: 35 ILEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFDSIESDIPDIDLLL 94
Query: 60 LSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+S+ + H A+PY VGK +F T P + M + D +V
Sbjct: 95 VSHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKV 139
>UNIPROTKB|C9J979 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 InterPro:IPR022712 Pfam:PF10996 HOGENOM:HOG000231294
HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00514808
ProteinModelPortal:C9J979 SMR:C9J979 STRING:C9J979
Ensembl:ENST00000434694 ArrayExpress:C9J979 Bgee:C9J979
Uniprot:C9J979
Length = 344
Score = 112 (44.5 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 29/110 (26%), Positives = 50/110 (45%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>UNIPROTKB|F1RJE8 [details] [associations]
symbol:CPSF3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:FP102596 RefSeq:XP_003127541.3 Ensembl:ENSSSCT00000003708
GeneID:100523908 KEGG:ssc:100523908 Uniprot:F1RJE8
Length = 599
Score = 115 (45.5 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 32/110 (29%), Positives = 50/110 (45%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD--F--VKELKRH---VHHIDA 57
I++T L D C L+ + ++LDCG FS D F + RH +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFSDDRRFPDFSYITRHGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVD 113
>MGI|MGI:1919207 [details] [associations]
symbol:Cpsf3l "cleavage and polyadenylation specific factor
3-like" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 MGI:MGI:1919207 GO:GO:0005737 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000231294 KO:K13148 OMA:MAVEYMS
GeneTree:ENSGT00700000104485 GO:GO:0032039 GO:GO:0016180
HOVERGEN:HBG080215 OrthoDB:EOG4GXFMB CTD:54973 EMBL:AK010425
EMBL:AK090206 EMBL:AK150436 EMBL:AK152740 EMBL:AK167607
EMBL:AK172533 EMBL:BC008240 EMBL:BC011155 IPI:IPI00467084
RefSeq:NP_082296.1 UniGene:Mm.259270 UniGene:Mm.475640
ProteinModelPortal:Q9CWS4 SMR:Q9CWS4 STRING:Q9CWS4
PhosphoSite:Q9CWS4 PaxDb:Q9CWS4 PRIDE:Q9CWS4
Ensembl:ENSMUST00000030901 GeneID:71957 KEGG:mmu:71957
InParanoid:Q9CWS4 NextBio:335052 Bgee:Q9CWS4 Genevestigator:Q9CWS4
GermOnline:ENSMUSG00000029034 Uniprot:Q9CWS4
Length = 600
Score = 115 (45.5 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 29/110 (26%), Positives = 49/110 (44%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW------DEMF-SMDFVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG D F ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>RGD|1306841 [details] [associations]
symbol:Cpsf3l "cleavage and polyadenylation specific factor
3-like" species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 RGD:1306841 GO:GO:0005634 GO:GO:0005737
GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 HOGENOM:HOG000231294 KO:K13148
OMA:MAVEYMS GeneTree:ENSGT00700000104485 HOVERGEN:HBG080215
OrthoDB:EOG4GXFMB CTD:54973 EMBL:BC105303 IPI:IPI00365477
RefSeq:NP_001029064.1 UniGene:Rn.98615 ProteinModelPortal:Q3MHC2
STRING:Q3MHC2 Ensembl:ENSRNOT00000026725 GeneID:298688
KEGG:rno:298688 InParanoid:Q3MHC2 NextBio:644186
Genevestigator:Q3MHC2 GermOnline:ENSRNOG00000019712 Uniprot:Q3MHC2
Length = 600
Score = 115 (45.5 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 29/110 (26%), Positives = 49/110 (44%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW------DEMF-SMDFVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG D F ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>UNIPROTKB|E1B7Q9 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9913
"Bos taurus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:DAAA02043243 IPI:IPI00971575 Ensembl:ENSBTAT00000010020
Uniprot:E1B7Q9
Length = 598
Score = 114 (45.2 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 30/110 (27%), Positives = 49/110 (44%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG FS D ++ R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVD 113
>UNIPROTKB|F1NV30 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9031
"Gallus gallus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS GeneTree:ENSGT00700000104485
IPI:IPI00571913 EMBL:AADN02040858 Ensembl:ENSGALT00000002586
Uniprot:F1NV30
Length = 600
Score = 114 (45.2 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 30/110 (27%), Positives = 49/110 (44%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW------DEMF-SMDFVKELKRHVHHIDA 57
IK+T L D C L+ + ++LDCG D F ++ + R +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVD 113
>UNIPROTKB|Q5ZIH0 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9031
"Gallus gallus" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000231294 KO:K13148 GO:GO:0032039 GO:GO:0016180
HOVERGEN:HBG080215 OrthoDB:EOG4GXFMB EMBL:AJ720814 IPI:IPI00571913
RefSeq:NP_001012854.1 UniGene:Gga.13403 ProteinModelPortal:Q5ZIH0
STRING:Q5ZIH0 GeneID:419418 KEGG:gga:419418 CTD:54973
InParanoid:Q5ZIH0 NextBio:20822477 Uniprot:Q5ZIH0
Length = 600
Score = 114 (45.2 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 30/110 (27%), Positives = 49/110 (44%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW------DEMF-SMDFVKELKRHVHHIDA 57
IK+T L D C L+ + ++LDCG D F ++ + R +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVD 113
>UNIPROTKB|Q5TA45 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0005634 GO:GO:0005737 GO:GO:0016787
EMBL:AL139287 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K13148 HOVERGEN:HBG080215
OrthoDB:EOG4GXFMB CTD:54973 EMBL:AL136813 EMBL:AK000549
EMBL:AK021939 EMBL:AK023356 EMBL:AK297350 EMBL:CR533557
EMBL:BC000675 EMBL:BC007978 EMBL:BC013904 EMBL:BK005728
EMBL:BK005673 IPI:IPI00063404 IPI:IPI00306882 IPI:IPI00514973
RefSeq:NP_001243392.1 RefSeq:NP_060341.2 UniGene:Hs.6449
ProteinModelPortal:Q5TA45 SMR:Q5TA45 IntAct:Q5TA45
MINT:MINT-1482228 STRING:Q5TA45 PhosphoSite:Q5TA45 DMDM:118572557
PaxDb:Q5TA45 PRIDE:Q5TA45 DNASU:54973 Ensembl:ENST00000419704
Ensembl:ENST00000435064 Ensembl:ENST00000450926
Ensembl:ENST00000545578 GeneID:54973 KEGG:hsa:54973 UCSC:uc001aee.1
UCSC:uc001aeh.1 UCSC:uc009vjz.1 GeneCards:GC01M001236
HGNC:HGNC:26052 HPA:HPA028379 HPA:HPA029025 MIM:611354
neXtProt:NX_Q5TA45 PharmGKB:PA142672080 InParanoid:Q5TA45
PhylomeDB:Q5TA45 ChiTaRS:CPSF3L GenomeRNAi:54973 NextBio:58222
ArrayExpress:Q5TA45 Bgee:Q5TA45 Genevestigator:Q5TA45
GermOnline:ENSG00000127054 Uniprot:Q5TA45
Length = 600
Score = 112 (44.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 29/110 (26%), Positives = 50/110 (45%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>UNIPROTKB|Q2YDM2 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9913
"Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0005634 GO:GO:0005737 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000231294 EMBL:BC110155 IPI:IPI00725178
UniGene:Bt.4894 ProteinModelPortal:Q2YDM2 STRING:Q2YDM2
PRIDE:Q2YDM2 HOVERGEN:HBG080215 InParanoid:Q2YDM2 OrthoDB:EOG4GXFMB
Uniprot:Q2YDM2
Length = 599
Score = 110 (43.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 31/110 (28%), Positives = 49/110 (44%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFS-----MDFVKELK--RHVHHIDA 57
I++T L D C L+ + ++LDCG FS DF + R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYNTRSGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVD 113
>UNIPROTKB|E2QY53 [details] [associations]
symbol:CPSF3L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:AAEX03003844 RefSeq:XP_003639102.1 Ensembl:ENSCAFT00000030626
GeneID:100855777 KEGG:cfa:100855777 Uniprot:E2QY53
Length = 600
Score = 110 (43.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 29/110 (26%), Positives = 49/110 (44%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDA 57
I++T L D C L+ + ++LDCG F+ D ++ R +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H GALPY G PI+ T P + + + D ++ D
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 113
>UNIPROTKB|E9PI75 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI01011963
ProteinModelPortal:E9PI75 SMR:E9PI75 Ensembl:ENST00000527719
ArrayExpress:E9PI75 Bgee:E9PI75 Uniprot:E9PI75
Length = 209
Score = 99 (39.9 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 26/100 (26%), Positives = 45/100 (45%)
Query: 15 DESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDAVLLSYPDVAH 67
D C L+ + ++LDCG F+ D ++ + R +D V++S+ + H
Sbjct: 20 DVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDH 79
Query: 68 LGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
GALPY G PI+ T P + + + D ++ D
Sbjct: 80 CGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 119
>UNIPROTKB|E9PQF0 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 GO:GO:0016787 EMBL:AL139287
HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00982774
ProteinModelPortal:E9PQF0 SMR:E9PQF0 Ensembl:ENST00000498476
ArrayExpress:E9PQF0 Bgee:E9PQF0 Uniprot:E9PQF0
Length = 167
Score = 95 (38.5 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 25/93 (26%), Positives = 42/93 (45%)
Query: 15 DESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDAVLLSYPDVAH 67
D C L+ + ++LDCG F+ D ++ + R +D V++S+ + H
Sbjct: 74 DVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDH 133
Query: 68 LGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
GALPY G PI+ T P + + + D
Sbjct: 134 CGALPYFSEMVGYDGPIYMTHPTQAICPILLED 166
>UNIPROTKB|E9PIG1 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00981641
ProteinModelPortal:E9PIG1 SMR:E9PIG1 Ensembl:ENST00000530031
ArrayExpress:E9PIG1 Bgee:E9PIG1 Uniprot:E9PIG1
Length = 249
Score = 99 (39.9 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 26/100 (26%), Positives = 45/100 (45%)
Query: 15 DESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDAVLLSYPDVAH 67
D C L+ + ++LDCG F+ D ++ + R +D V++S+ + H
Sbjct: 61 DVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDH 120
Query: 68 LGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
GALPY G PI+ T P + + + D ++ D
Sbjct: 121 CGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 160
>WB|WBGene00008642 [details] [associations]
symbol:F10B5.8 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0009792 EMBL:Z48334 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000231294 KO:K13148 OMA:MAVEYMS
GeneTree:ENSGT00700000104485 PIR:T20694 RefSeq:NP_495706.2
ProteinModelPortal:Q9U3K2 SMR:Q9U3K2 STRING:Q9U3K2 PaxDb:Q9U3K2
EnsemblMetazoa:F10B5.8 GeneID:174310 KEGG:cel:CELE_F10B5.8
UCSC:F10B5.8 CTD:174310 WormBase:F10B5.8 InParanoid:Q9U3K2
NextBio:883468 Uniprot:Q9U3K2
Length = 608
Score = 104 (41.7 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 29/110 (26%), Positives = 50/110 (45%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW------DEMF-SMDFVKELKRHVHHIDA 57
IK+ L D C L+ + I++DCG D F ++ R ++D
Sbjct: 8 IKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDC 67
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
V++S+ + H G+LP+M G PI+ T P + + + D +V+ D
Sbjct: 68 VIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCD 117
>DICTYBASE|DDB_G0278189 [details] [associations]
symbol:ints11 "integrator complex subunit 11"
species:44689 "Dictyostelium discoideum" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0278189 Pfam:PF07521 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 RefSeq:XP_642189.1
ProteinModelPortal:Q54YL3 PRIDE:Q54YL3 EnsemblProtists:DDB0234100
GeneID:8621396 KEGG:ddi:DDB_G0278189 OMA:RTIANET
ProtClustDB:CLSZ2729107 Uniprot:Q54YL3
Length = 744
Score = 105 (42.0 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 27/103 (26%), Positives = 46/103 (44%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGW-----DEMFSMDF--VKELKRHVHHIDA 57
IK+ L D C ++ + I+ DCG D DF + + + ID
Sbjct: 3 IKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVIDC 62
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYD 100
V++++ + H GALP+ CG PI+ T+P + + + D
Sbjct: 63 VIITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLED 105
>POMBASE|SPBC1709.15c [details] [associations]
symbol:cft2 "cleavage factor two Cft2/polyadenylation
factor CPSF-73 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISO]
[GO:0006378 "mRNA polyadenylation" evidence=ISO] [GO:0006379 "mRNA
cleavage" evidence=ISO] InterPro:IPR027075 PomBase:SPBC1709.15c
Pfam:PF07521 EMBL:CU329671 GO:GO:0006378 GenomeReviews:CU329671_GR
GO:GO:0005847 GO:GO:0006379 PIR:T39643 RefSeq:NP_595448.1
ProteinModelPortal:O74740 STRING:O74740 EnsemblFungi:SPBC1709.15c.1
GeneID:2539954 KEGG:spo:SPBC1709.15c eggNOG:COG1236 KO:K14402
OMA:ISSIATP OrthoDB:EOG4WWVSN NextBio:20801097 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 Uniprot:O74740
Length = 797
Score = 101 (40.6 bits), Expect = 0.00029, P = 0.00029
Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 23 LQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGL-S 81
+++D I +D G D+ V E D +LLS+ D+AH+G L Y K +
Sbjct: 18 IELDGIHIYIDPGSDDSLKHPEVPEQP------DLILLSHSDLAHIGGLVYAYYKYDWKN 71
Query: 82 CPIFATIPVYKMGQMFMYDLFQVRY 106
I+AT+P MG+M M D + Y
Sbjct: 72 AYIYATLPTINMGRMTMLDAIKSNY 96
>UNIPROTKB|Q9KV92 [details] [associations]
symbol:VC_0264 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0016787
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K07576 OMA:CHIDHVG PIR:F82345 RefSeq:NP_229920.1
ProteinModelPortal:Q9KV92 DNASU:2614470 GeneID:2614470
KEGG:vch:VC0264 PATRIC:20079570 ProtClustDB:CLSK2517501
Uniprot:Q9KV92
Length = 455
Score = 98 (39.6 bits), Expect = 0.00029, P = 0.00029
Identities = 24/86 (27%), Positives = 48/86 (55%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 33 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 86
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ GL PI++T ++ + + D
Sbjct: 87 LA-AGLKQPIYSTAATAELVPLMLED 111
>TIGR_CMR|VC_0264 [details] [associations]
symbol:VC_0264 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0016787 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K07576 OMA:CHIDHVG
PIR:F82345 RefSeq:NP_229920.1 ProteinModelPortal:Q9KV92
DNASU:2614470 GeneID:2614470 KEGG:vch:VC0264 PATRIC:20079570
ProtClustDB:CLSK2517501 Uniprot:Q9KV92
Length = 455
Score = 98 (39.6 bits), Expect = 0.00029, P = 0.00029
Identities = 24/86 (27%), Positives = 48/86 (55%)
Query: 20 CYLLQVDEFKILLDCGW----DEM-FSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYM 74
C+ L+ D +L+DCG DE +++F + H+DA++L++ + H+G LP++
Sbjct: 33 CHELRADGQALLIDCGLFQGADERPLAVEFA------LGHVDALILTHAHIDHIGRLPWL 86
Query: 75 VGKCGLSCPIFATIPVYKMGQMFMYD 100
+ GL PI++T ++ + + D
Sbjct: 87 LA-AGLKQPIYSTAATAELVPLMLED 111
>UNIPROTKB|G3V1S5 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 EMBL:AL139287 EMBL:CH471183 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K13148 OMA:MAVEYMS
CTD:54973 UniGene:Hs.6449 GeneID:54973 KEGG:hsa:54973
HGNC:HGNC:26052 ChiTaRS:CPSF3L GenomeRNAi:54973
RefSeq:NP_001243385.1 ProteinModelPortal:G3V1S5 SMR:G3V1S5
Ensembl:ENST00000540437 ArrayExpress:G3V1S5 Bgee:G3V1S5
Uniprot:G3V1S5
Length = 606
Score = 99 (39.9 bits), Expect = 0.00034, P = 0.00034
Identities = 26/100 (26%), Positives = 45/100 (45%)
Query: 15 DESPPCYLLQVDEFKILLDCGWDEMFSMD-------FVKELKRHVHHIDAVLLSYPDVAH 67
D C L+ + ++LDCG F+ D ++ + R +D V++S+ + H
Sbjct: 20 DVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDH 79
Query: 68 LGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
GALPY G PI+ T P + + + D ++ D
Sbjct: 80 CGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVD 119
>FB|FBgn0036570 [details] [associations]
symbol:IntS9 "Integrator 9" species:7227 "Drosophila
melanogaster" [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0034472 "snRNA 3'-end processing" evidence=IDA]
[GO:0032039 "integrator complex" evidence=ISS] [GO:0016180 "snRNA
processing" evidence=ISS] InterPro:IPR027074 EMBL:AE014296
GO:GO:0006378 GO:GO:0005847 GO:GO:0006379 InterPro:IPR022712
Pfam:PF10996 SMART:SM01027 CTD:55756 KO:K13146
PANTHER:PTHR11203:SF2 GeneTree:ENSGT00390000001445 OMA:PLAMKCV
GO:GO:0034472 EMBL:AY058574 RefSeq:NP_648838.3 UniGene:Dm.977
SMR:Q95TS5 IntAct:Q95TS5 MINT:MINT-1734573
EnsemblMetazoa:FBtr0075495 GeneID:39763 KEGG:dme:Dmel_CG5222
UCSC:CG5222-RA FlyBase:FBgn0036570 InParanoid:Q95TS5
OrthoDB:EOG4FJ6QV GenomeRNAi:39763 NextBio:815254 Uniprot:Q95TS5
Length = 654
Score = 71 (30.1 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFV 45
+++ LSG D + PCY++ +I+LDCG E ++F+
Sbjct: 1 MRLYCLSG--DLAKPCYIITFKGLRIMLDCGLTEQTVLNFL 39
Score = 70 (29.7 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 55 IDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDL 101
+D +L+S + ++ ALPY+ G ++AT P ++G+ F+ +L
Sbjct: 97 VDVILIS--NYLNMLALPYITENTGFKGKVYATEPTLQIGRFFLEEL 141
>SGD|S000004267 [details] [associations]
symbol:YSH1 "Putative endoribonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IMP] [GO:0006379 "mRNA
cleavage" evidence=IMP] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=IMP] [GO:0031126 "snoRNA 3'-end
processing" evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP]
[GO:0034247 "snoRNA splicing" evidence=IMP] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA;IPI] [GO:0005849 "mRNA cleavage factor complex"
evidence=IPI] [GO:0004521 "endoribonuclease activity"
evidence=ISS;IMP] [GO:0003723 "RNA binding" evidence=IC]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 SGD:S000004267
Pfam:PF07521 GO:GO:0046872 GO:GO:0006378 EMBL:BK006945
GO:GO:0004521 GO:GO:0005847 GO:GO:0006379 GO:GO:0006369
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 EMBL:U17245 HOGENOM:HOG000203394 KO:K14403
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0031126 GO:GO:0034247
OMA:EISFAAH OrthoDB:EOG41ZJK7 PIR:S51413 RefSeq:NP_013379.1
ProteinModelPortal:Q06224 SMR:Q06224 DIP:DIP-2470N IntAct:Q06224
MINT:MINT-375457 STRING:Q06224 PaxDb:Q06224 PeptideAtlas:Q06224
EnsemblFungi:YLR277C GeneID:850983 KEGG:sce:YLR277C CYGD:YLR277c
NextBio:967501 Genevestigator:Q06224 GermOnline:YLR277C
Uniprot:Q06224
Length = 779
Score = 98 (39.6 bits), Expect = 0.00059, P = 0.00059
Identities = 26/107 (24%), Positives = 51/107 (47%)
Query: 2 TSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDA 57
T+ K SL G+ + C++LQ ++LD G + + S+ F E + +D
Sbjct: 6 TTTFKFFSLGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFD--LSKVDI 63
Query: 58 VLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQV 104
+L+S+ + H +LPY++ + +F T P + + + D +V
Sbjct: 64 LLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRV 110
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.329 0.142 0.455 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 119 110 0.00091 102 3 11 22 0.36 30
29 0.42 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 44
No. of states in DFA: 565 (60 KB)
Total size of DFA: 124 KB (2080 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.54u 0.08s 11.62t Elapsed: 00:00:17
Total cpu time: 11.55u 0.08s 11.63t Elapsed: 00:00:17
Start: Thu Aug 15 13:36:21 2013 End: Thu Aug 15 13:36:38 2013