RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17634
(119 letters)
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 99.9 bits (248), Expect = 7e-26
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 7 MTSLSGTMDE---SPPCYLLQVDEFKILLDCGWDEMFS--MDFVKELKRHVHHIDAVLLS 61
MT D+ + +++ D +L+D GW+ +K ++ + ID ++LS
Sbjct: 1 MTYKYNCCDDGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILS 60
Query: 62 YPDVAHLGALPYMV----GKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
P + LGA + ++AT+PV +G++ D +
Sbjct: 61 QPTIECLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASA 108
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor;
hydrolase, KH, metallo-beta-lactamase; 3.10A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 636
Score = 58.9 bits (143), Expect = 1e-11
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Query: 20 CYLLQVDEFKILLDCG-----WDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHL---GAL 71
C LQ ++LLDCG D+ S ++ + + +DAV++++ AHL G L
Sbjct: 195 CLYLQTPNSRVLLDCGVNVAGGDDKNSYPYLNVPEFTLDSLDAVIITH---AHLDHSGFL 251
Query: 72 PYMVGKCGLSCPIFATIP 89
PY+ G P++ T P
Sbjct: 252 PYLY-HYGYDGPVYCTAP 268
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
processing; 2.59A {Methanosarcina mazei}
Length = 640
Score = 58.5 bits (142), Expect = 2e-11
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 20 CYLLQVDEFKILLDCG----WDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHL---GALP 72
C+LL E +IL+DCG DE + ++ IDAV++++ AHL G +P
Sbjct: 199 CFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIVTH---AHLDHQGLVP 255
Query: 73 YMVGKCGLSCPIFATIP 89
+ K G P++ T P
Sbjct: 256 LLF-KYGYEGPVYCTPP 271
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
metallo-B-lactamase, PRE-mRNA processing, artemis,
V(D)J recombination; 2.10A {Homo sapiens} SCOP:
d.157.1.10 PDB: 2i7v_A
Length = 459
Score = 58.0 bits (141), Expect = 2e-11
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 20 CYLLQVDEFKILLDCG-------WDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALP 72
C +L+ KI+LDCG D + +D + ID +L+S+ + H GALP
Sbjct: 27 CIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID-----PAEIDLLLISHFHLDHCGALP 81
Query: 73 YMVGKCGLSCPIFATIP 89
+ + K F T
Sbjct: 82 WFLQKTSFKGRTFMTHA 98
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
family, KH domain, ribonuclease, ME beta-lactamase
superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
3af6_A*
Length = 651
Score = 57.0 bits (138), Expect = 6e-11
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 20 CYLLQVDEFKILLDCG------WDEMFSMDFVKELKRHVH----HIDAVLLSYPDVAHL- 68
L+Q DE +L+D G D + + +DA+++++ AHL
Sbjct: 204 ALLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAIIITH---AHLD 260
Query: 69 --GALPYMVGKCGLSCPIFATIP 89
G LPY+ PI+ T P
Sbjct: 261 HCGMLPYLFRYNLFDGPIYTTPP 283
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease,
hydrolase, metal- nuclease, RNA-binding, rRNA
processing; HET: FLC; 2.05A {Thermus thermophilus} PDB:
2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A*
2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Length = 431
Score = 54.8 bits (133), Expect = 4e-10
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 18/79 (22%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRH------VHHIDAVLLSYPDVAHL---GA 70
+LL ++LLDCG MF +E + H +DAVLL++ AHL G
Sbjct: 16 AHLLLAGGRRVLLDCG---MF-QGK-EEARNHAPFGFDPKEVDAVLLTH---AHLDHVGR 67
Query: 71 LPYMVGKCGLSCPIFATIP 89
LP + + G P++AT
Sbjct: 68 LPKLF-REGYRGPVYATRA 85
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II;
metal-dependent hydrolases of the beta-lactamase
superfamily hydrolase; 2.10A {Thermoanaerobacter
tengcongensis}
Length = 284
Score = 39.7 bits (92), Expect = 7e-05
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKC 78
LL+ +I++D G E F + + V I V+L++ H+G L ++ +
Sbjct: 35 SLLLKKGNKEIVVDTGQSENF-IKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLERN 92
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A
{Bacillus subtilis}
Length = 555
Score = 38.7 bits (91), Expect = 2e-04
Identities = 16/76 (21%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHIDAVLLSYPDVAHLGAL 71
Y +Q + +L+D G DE+ +D+V L ++ I + +++ H+G +
Sbjct: 24 TYAVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEDKIKGLFITHGHEDHIGGI 83
Query: 72 PYMVGKCGLSCPIFAT 87
PY++ + ++ P++
Sbjct: 84 PYLLRQ--VNIPVYGG 97
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease,
exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A
{Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Length = 562
Score = 38.3 bits (90), Expect = 2e-04
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 20 CYLLQVDEFKILLDCGW----DEMFSMDFV----KELKRHVHHIDAVLLSYPDVAHLGAL 71
+ + + +LD G + M +D + L H H I A +L++ H+G L
Sbjct: 32 ITVFRFRDEIFVLDGGLAFPEEGMPGVDLLIPRVDYLIEHRHKIKAWVLTHGHEDHIGGL 91
Query: 72 PYMVGKCG---LSCPIFAT 87
P+++ PI+
Sbjct: 92 PFLLPMIFGKESPVPIYGA 110
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural
genomics, PSI, protein STRU initiative; 1.50A {Bacillus
anthracis str} SCOP: d.157.1.9
Length = 268
Score = 37.3 bits (87), Expect = 4e-04
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 18 PPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHV--HHIDAVLLS 61
YL + D F++L+DCG + +L++++ IDAV+LS
Sbjct: 43 TSGYLFEHDGFRLLVDCG------SGVLAQLQKYITPSDIDAVVLS 82
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold.
two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A
{Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A*
1l9y_A
Length = 263
Score = 36.8 bits (85), Expect = 6e-04
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 4/69 (5%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSM--DFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
YL+ IL++ + M +K+L +L+S+ H + +
Sbjct: 27 SYLIVTPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQ 86
Query: 78 CGLSCPIFA 86
Sbjct: 87 TK--AKYMV 93
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance,
acquired B3, drug binding; 1.40A {Pseudomonas
aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Length = 303
Score = 36.2 bits (83), Expect = 0.001
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSM--DFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
L+ D IL+D + ++ L + A++ S+ H G+L +
Sbjct: 60 ALLVTSDAGHILVDAATPQAGPQILANIRALGFRPEDVRAIVFSHEHFDHAGSLAELQKA 119
Query: 78 CGLSCPIFA 86
G P++A
Sbjct: 120 TG--APVYA 126
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic
resistance, binuclear zinc, hydrolase; 1.70A
{Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB:
2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A*
2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Length = 269
Score = 35.7 bits (82), Expect = 0.002
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSM--DFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
L+Q + +LLD G +M S D +K + +LLS+ H G + + +
Sbjct: 40 ALLVQTPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRR 99
Query: 78 CGLSCPIFA 86
G + A
Sbjct: 100 TG--AKVAA 106
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme,
sulfonamide complex hydrolase-hydrolase inhibitor
complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB:
3lvz_A* 2gmn_A
Length = 294
Score = 35.3 bits (81), Expect = 0.002
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSM--DFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
Y+++ + IL+D + M D + +L V I +L ++ + H G + +
Sbjct: 57 VYVIKTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKE 116
Query: 78 CGLSCPIFA 86
G + A
Sbjct: 117 TG--AQLVA 123
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein STR
initiative, PSI, joint center for structural genomics,
ELEC transport; HET: MSE; 1.80A {Thermotoga maritima}
SCOP: c.23.5.1 d.157.1.3
Length = 410
Score = 35.2 bits (81), Expect = 0.002
Identities = 19/100 (19%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKRHV--HHIDAVLLSYPDVAHLGALPYMVGKC 78
YL++++ +L+D ++ +F+ L + V I +++++ + H G+LP +
Sbjct: 55 YLVKLNGANVLIDGWKGN-YAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTI 113
Query: 79 GLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLEL 118
G I A+ G+ + + ++ T +K E+
Sbjct: 114 GHDVEIIAS----NFGKRLLEGFYGIKDVTVVKDGEEREI 149
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate
utilization, alkylphosphonate uptake; 1.40A {Escherichia
coli} PDB: 3p2u_A
Length = 258
Score = 34.6 bits (80), Expect = 0.003
Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 7/82 (8%)
Query: 18 PPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
P +++ ++ L+D G ++ + LL++ + H+ L +
Sbjct: 39 PCSGVVKFNDAITLIDAGLHDLA-------DRWSPGSFQQFLLTHYHMDHVQGLFPLRWG 91
Query: 78 CGLSCPIFATIPVYKMGQMFMY 99
G P++ +F +
Sbjct: 92 VGDPIPVYGPPDEQGCDDLFKH 113
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A
{Thermus thermophilus} PDB: 2zzi_A
Length = 207
Score = 31.8 bits (73), Expect = 0.030
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 19/74 (25%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHV-------HHIDAVLLSYPDVAHLGALP 72
YL++ E +L+D G + + + H D H+GA+
Sbjct: 15 AYLVETGEGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFD----------HVGAVA 64
Query: 73 YMVGKCGLSCPIFA 86
+V P++
Sbjct: 65 PLVEALD--LPVYL 76
>2p97_A Hypothetical protein; putative metal-dependent hydrolase,
structural genomics, JOI for structural genomics, JCSG;
HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP:
d.157.1.12
Length = 201
Score = 30.2 bits (68), Expect = 0.100
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 8/67 (11%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79
+ E IL+D ++ L + ++L+ D H+ + + +
Sbjct: 26 GFAWIRPEGNILIDPVALSNHDWKHLESLGG----VVWIVLTNSD--HVRSAKEIADQTY 79
Query: 80 LSCPIFA 86
I
Sbjct: 80 --TKIAG 84
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus
thermophilus}
Length = 317
Score = 29.3 bits (66), Expect = 0.27
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 11/87 (12%)
Query: 20 CYLLQVDEFKILLDCGWDEMFS----MDFVKELKRHVHHIDAVLLSY--PDVAHLGALPY 73
YLLQ L+D + + EL + +LL++ PD H G +
Sbjct: 24 LYLLQGAGEVALVDTALGTRAARGALELHLAELGLCFQDVKTILLTHHHPD--HYGLSGF 81
Query: 74 MVGKCGLSCPIFATIPVYKMGQMFMYD 100
GL +F + G F +
Sbjct: 82 F---EGLGARVFLHEEEFARGHRFWRE 105
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine
like domain, oxidore; HET: FMN; 1.70A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 2ohi_A* 2ohj_A*
Length = 404
Score = 29.1 bits (65), Expect = 0.29
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 11/95 (11%)
Query: 21 YLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSY-------PDVAHLGALPY 73
YL+ DE L+D + + + ++ + + + Y D H G L
Sbjct: 38 YLVCGDEGVALIDNSYPG-TFDELMARVEDALQQVGMERVDYIIQNHVEKD--HSGVLVE 94
Query: 74 MVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDT 108
+ + PI+ T K L + + T
Sbjct: 95 LHRRFP-EAPIYCTEVAVKGLLKHYPSLREAEFMT 128
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone
signal, metallo-beta-lactamase FOL conserved
hypothetical protein; HET: EPE; 1.80A {Sulfolobus
tokodaii}
Length = 261
Score = 28.6 bits (64), Expect = 0.38
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 20 CYLLQVDEFKILLDCGWDEMFS-MDFVKELKR----HVH--HIDAV--LLSYPD---VAH 67
Y++ ++ +++D G + F+ +L H+H HI + LL +
Sbjct: 22 VYVMCGEKLTVMIDAGVSNSIADFSFLDKLDYIVLTHLHIDHIGLLPELLQVYKAKVLVK 81
Query: 68 LGALPYMVGKCGLSCPIFATIPVY 91
G Y+ + GL + V
Sbjct: 82 SGFKKYLTSEDGLKKLNESAEKVL 105
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR
initiative, midwest center for structural genomics,
MCSG, U function; 2.00A {Enterococcus faecalis} SCOP:
d.157.1.10
Length = 429
Score = 28.1 bits (63), Expect = 0.69
Identities = 11/98 (11%), Positives = 23/98 (23%), Gaps = 36/98 (36%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSM------DFVKELKRHVHHIDAVLLSYPDVA------- 66
+ + I D G F D ++ L + + L P +
Sbjct: 22 VIEVAYKDAHIFFDFG--TEFRPELDLPDDHIETLINNRLVPELKDLYDPRLGYEYHGAE 79
Query: 67 -----------------HLGALPYMVGKCGLSCPIFAT 87
H + Y+ + P++
Sbjct: 80 DKDYQHTAVFLSHAHLDHSRMINYLD----PAVPLYTL 113
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.75
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 38 EMFSMDFVKELK-RHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPIFATIPVY--KMG 94
+F FV + V + +LS ++ H+ V +F T+ +M
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR---LFWTLLSKQEEMV 79
Query: 95 QMFMYDLFQVRYDTFL 110
Q F+ ++ ++ Y FL
Sbjct: 80 QKFVEEVLRINYK-FL 94
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; 1.97A {Thermotoga
maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Length = 280
Score = 26.9 bits (60), Expect = 1.7
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 18 PPCYLLQVDEFKILLDCG 35
+ +IL D G
Sbjct: 10 LFSTWIYYSPERILFDAG 27
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural
genomics, joint center for structural genomics, JCSG;
HET: CIT; 1.85A {Parabacteroides distasonis}
Length = 262
Score = 26.3 bits (58), Expect = 2.5
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 26 DEFKILLDCGWDEMFSMDFVKELKRHVHHIDAV 58
D G ++ + LK+ I ++
Sbjct: 157 QSLGSCSDVGHWRREGLNQIDCLKQLKGRIISL 189
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase,
metal-binding, tRNA processing, zinc-binding,
catabolism; 1.70A {Homo sapiens}
Length = 368
Score = 25.6 bits (56), Expect = 4.2
Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 18 PPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLS 61
+L+ + L DCG + + + I + ++
Sbjct: 19 ASAVVLRCEGECWLFDCGEGTQTQL---MKSQLKAGRITKIFIT 59
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate
specificity, pectin, GH-A, family 53, plant cell WALL
degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis}
SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A*
2gft_A*
Length = 399
Score = 25.5 bits (55), Expect = 4.9
Identities = 6/31 (19%), Positives = 7/31 (22%)
Query: 32 LDCGWDEMFSMDFVKELKRHVHHIDAVLLSY 62
+ L RH D SY
Sbjct: 203 FTNPETSGRYAWIAETLHRHHVDYDVFASSY 233
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate dehydrogenase...; lipoyl domain, lipoic acid,
2-oxoacid dehydrogenase; NMR {Homo sapiens}
Length = 108
Score = 24.6 bits (54), Expect = 6.0
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 1 MTSIIKMTSLSGTMDE 16
+ + SLS TM
Sbjct: 6 SGQKVPLPSLSPTMQA 21
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural
genomics, structural GEN consortium, SGC, ATP-binding,
hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Length = 249
Score = 24.6 bits (54), Expect = 8.9
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 37 DEMFSMDFVKELKR 50
D + +MDF E+ +
Sbjct: 196 DRILNMDFETEVDK 209
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.143 0.448
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,879,330
Number of extensions: 102336
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 56
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.8 bits)