RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17634
(119 letters)
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 514
Score = 90.7 bits (224), Expect = 3e-23
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 19 PCYLLQVDEFKILLDCGWDEMFS--MDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMV- 75
+++ D +L+D GW+ +K ++ + ID ++LS P + LGA +
Sbjct: 16 VGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYY 75
Query: 76 ---GKCGLSCPIFATIPVYKMGQMFMYDLFQVR 105
++AT+PV +G++ D +
Sbjct: 76 NFTSHFISRIQVYATLPVINLGRVSTIDSYASA 108
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
specificity factor subunit 3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 451
Score = 69.4 bits (168), Expect = 9e-16
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHV--HHIDAVLLSY 62
+ + L + C +L+ KI+LDCG + ID +L+S+
Sbjct: 4 LLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISH 63
Query: 63 PDVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRY 106
+ H GALP+ + K F T + + + D +V
Sbjct: 64 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSN 107
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein
TTHA0252 {Thermus thermophilus [TaxId: 274]}
Length = 431
Score = 68.9 bits (167), Expect = 1e-15
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 5 IKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMF-SMDFVKELKRHVHHIDAVLLSYP 63
+++ + + +LL ++LLDCG + +DAVLL++
Sbjct: 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHA 60
Query: 64 DVAHLGALPYMVGKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTF 109
+ H+G LP + + G P++AT + ++ + D +V + F
Sbjct: 61 HLDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKVMDEPF 105
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755,
N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 250
Score = 37.6 bits (86), Expect = 1e-04
Identities = 16/97 (16%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHV--HHIDAVLLSYPDVAHLGALPYMVGK 77
YL++++ +L+D +F+ L + V I +++++ + H G+LP +
Sbjct: 42 AYLVKLNGANVLIDGWKGNYAK-EFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKT 100
Query: 78 CGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLL 114
G I A+ ++ + F + +
Sbjct: 101 IGHDVEIIASNFGKRLLEGFYGIKDVTVVKDGEEREI 137
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine
esterase Pce (LytD), N-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 305
Score = 35.0 bits (79), Expect = 0.001
Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 23/82 (28%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKEL-----------------------KRHVHHID 56
+L+ + ++D G D F + V +D
Sbjct: 16 AIILESNGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLD 75
Query: 57 AVLLSYPDVAHLGALPYMVGKC 78
+L+++ H+G + ++
Sbjct: 76 FILVTHTHSDHIGNVDELLSTY 97
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 264
Score = 34.2 bits (77), Expect = 0.002
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 2/92 (2%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSM--DFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
Y+++ + IL+D + M D + +L V I +L ++ + H G + +
Sbjct: 29 VYVIKTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKE 88
Query: 78 CGLSCPIFATIPVYKMGQMFMYDLFQVRYDTF 109
G G + D
Sbjct: 89 TGAQLVAGERDKPLLEGGYYPGDEKNEDLAFP 120
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter
gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}
Length = 262
Score = 33.0 bits (74), Expect = 0.004
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 20 CYLLQVDEFKILLDCGWDEMFS--MDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
YL+ IL++ + +K+L +L+S+ H + +
Sbjct: 26 SYLIVTPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQ 85
Query: 78 CGLSCPI 84
+
Sbjct: 86 TKAKYMV 92
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894
{Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 33.2 bits (74), Expect = 0.005
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 2/90 (2%)
Query: 20 CYLLQVDEFKILLDCGWDEMFS--MDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGK 77
L+ + +I++D G + EL I VL ++ + H+
Sbjct: 25 VVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFENA 84
Query: 78 CGLSCPIFATIPVYKMGQMFMYDLFQVRYD 107
++ T G + +V
Sbjct: 85 TFYVHEVYKTKNYLSFGTIVGRIYSKVISS 114
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 32.0 bits (71), Expect = 0.011
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 7/83 (8%)
Query: 22 LLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLS 81
+ +IL D G L V+ V L++ V H+ L +V +
Sbjct: 14 WIYYSPERILFDAG------EGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVV-NIRNN 66
Query: 82 CPIFATIPVYKMGQMFMYDLFQV 104
P+ + +
Sbjct: 67 GMGDREKPLDVFYPEGNRAVEEY 89
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016)
{Bacillus anthracis [TaxId: 1392]}
Length = 244
Score = 31.3 bits (69), Expect = 0.017
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 12 GTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHV--HHIDAVLLSYPDVAHLG 69
E+ YL + D F++L+DCG + +L++++ IDAV+LS+ H+
Sbjct: 13 PEAGEATSGYLFEHDGFRLLVDCG------SGVLAQLQKYITPSDIDAVVLSHYHHDHVA 66
Query: 70 ALPYMVGKCGLSCPIFATIPVYKM 93
+ + ++ +P +
Sbjct: 67 DIGVLQYARLITSATKGQLPELPI 90
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides
fragilis [TaxId: 817]}
Length = 230
Score = 30.8 bits (68), Expect = 0.024
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 1/91 (1%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKEL-KRHVHHIDAVLLSYPDVAHLGALPYMVGKC 78
++ + LLD ++ + V + + + ++ +G L Y+ K
Sbjct: 37 GMIVINNHQAALLDTPINDAQTETLVNWVADSLHAKVTTFIPNHWHGDCIGGLGYLQKKG 96
Query: 79 GLSCPIFATIPVYKMGQMFMYDLFQVRYDTF 109
S TI + K + + + T
Sbjct: 97 VQSYANQMTIDLAKEKGLPVPEHGFTDSLTV 127
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp.
WBC-3 [TaxId: 165468]}
Length = 294
Score = 30.7 bits (68), Expect = 0.034
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 10 LSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDF------VKELKRHVHHIDAVLLSYP 63
++ S YL+ +L+D G +F +K +D + +++
Sbjct: 54 QKAPLETSVTGYLVNTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHM 113
Query: 64 DVAHLGALPYMVGKC 78
H+G L
Sbjct: 114 HPDHVGGLMVGEQLA 128
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas
aeruginosa, IMP-1 [TaxId: 287]}
Length = 220
Score = 30.3 bits (67), Expect = 0.036
Identities = 10/80 (12%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79
++ V+ L+D + + V + I + S+ G + ++ +
Sbjct: 33 GLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSR-- 90
Query: 80 LSCPIFATIPVYKMGQMFMY 99
S P +A+ ++ +
Sbjct: 91 -SIPTYASELTNELLKKDGK 109
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904
{Enterococcus faecalis [TaxId: 1351]}
Length = 183
Score = 30.0 bits (66), Expect = 0.040
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 6/94 (6%)
Query: 25 VDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCGLSCPI 84
V E K L D + + + AV LS+ + H + Y+ L
Sbjct: 5 VPELKDLYDPRLGYEY-----HGAEDKDYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLK 59
Query: 85 F-ATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLE 117
I + F + ++ L
Sbjct: 60 ETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLN 93
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas
aeruginosa, VIM-2 [TaxId: 287]}
Length = 230
Score = 29.6 bits (65), Expect = 0.062
Identities = 6/100 (6%), Positives = 34/100 (34%), Gaps = 4/100 (4%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELK-RHVHHIDAVLLSYPDVAHLGALPYMVGKC 78
+++ + +L+D W + + E++ + + + ++ +G + +
Sbjct: 40 GLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAA- 98
Query: 79 GLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTLEL 118
+A+ ++ ++ ++ + +
Sbjct: 99 --GVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRF 136
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase
{Xanthomonas maltophilia [TaxId: 40324]}
Length = 266
Score = 28.4 bits (62), Expect = 0.16
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 12 GTMDESPPCYLLQVDEFKILLDCGWDEMFS--MDFVKELKRHVHHIDAVLLSYPDVAHLG 69
GT D + L+Q + +LLD G +M S +D +K + +LLS+ H G
Sbjct: 33 GTEDLT--ALLVQTPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAG 90
Query: 70 ALPYMVGKC 78
+ + +
Sbjct: 91 PVAELKRRT 99
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus
[TaxId: 1396]}
Length = 221
Score = 28.4 bits (62), Expect = 0.20
Identities = 10/91 (10%), Positives = 32/91 (35%), Gaps = 1/91 (1%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKEL-KRHVHHIDAVLLSYPDVAHLGALPYMVGKC 78
+L + +L+D WD+ + + ++ + K+ + V++++ +G + + +
Sbjct: 37 GLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERG 96
Query: 79 GLSCPIFATIPVYKMGQMFMYDLFQVRYDTF 109
+ T + K
Sbjct: 97 IKAHSTALTAELAKKNGYEEPLGDLQTVTNL 127
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium
meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}
Length = 219
Score = 27.0 bits (58), Expect = 0.51
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 1/91 (1%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELK-RHVHHIDAVLLSYPDVAHLGALPYMVGKC 78
L D+ +++DC W E F E+ +H + + ++ G L Y
Sbjct: 29 AVYLVTDKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKIG 88
Query: 79 GLSCPIFATIPVYKMGQMFMYDLFQVRYDTF 109
+ T + +F
Sbjct: 89 AKTYSTKMTDSILAKENKPRAQYTFDNNKSF 119
>d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752
{Thermotoga maritima [TaxId: 2336]}
Length = 278
Score = 26.5 bits (58), Expect = 0.81
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 36 WDEMFSMDFVKELKRH 51
DE+F++ F +EL+R+
Sbjct: 260 LDEIFNLPFNEELRRY 275
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas
hydrophila, CphA [TaxId: 644]}
Length = 228
Score = 26.4 bits (57), Expect = 0.85
Identities = 12/98 (12%), Positives = 26/98 (26%), Gaps = 1/98 (1%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKR-HVHHIDAVLLSYPDVAHLGALPYMVGKC 78
+ + ++ W + + K +KR + V+ + G Y
Sbjct: 25 SMVYFGAKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIG 84
Query: 79 GLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLKLLLTL 116
T + K + + + L L L
Sbjct: 85 AKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVL 122
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus
subtilis [TaxId: 1423]}
Length = 307
Score = 26.6 bits (57), Expect = 0.93
Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 6/96 (6%)
Query: 19 PCYLLQVDE---FKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMV 75
L++ E L DCG M I+ + +++ H+ LP ++
Sbjct: 20 TSVALKLLEERRSVWLFDCGEATQHQM---LHTTIKPRKIEKIFITHMHGDHVYGLPGLL 76
Query: 76 GKCGLSCPIFATIPVYKMGQMFMYDLFQVRYDTFLK 111
G G + T L
Sbjct: 77 GSRSFQGGEDELTVYGPKGIKAFIETSLAVTKTHLT 112
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena
variabilis [TaxId: 1172]}
Length = 200
Score = 25.6 bits (55), Expect = 1.3
Identities = 8/86 (9%), Positives = 20/86 (23%)
Query: 20 CYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLLSYPDVAHLGALPYMVGKCG 79
+ E IL+D ++ L V + + Y
Sbjct: 25 GFAWIRPEGNILIDPVALSNHDWKHLESLGGVVWIVLTNSDHVRSAKEIADQTYTKIAGP 84
Query: 80 LSCPIFATIPVYKMGQMFMYDLFQVR 105
++ I + + ++
Sbjct: 85 VAEKENFPIYCDRWLSDGDELVPGLK 110
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 25.6 bits (55), Expect = 1.4
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 30 ILLDCGWDEMFSMDFVKELKRH-VHHIDAVLLSYPDVAHLGALPYMVG 76
+L + + + +DA + A G L +MVG
Sbjct: 91 VLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVG 138
>d1e5qa2 d.81.1.2 (A:125-391) Saccharopine reductase {Rice blast
fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 267
Score = 25.4 bits (55), Expect = 2.3
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 32 LDCGWDEMFSMDFVKELKRHVHHIDAV 58
LD G D ++++ ++E+ I
Sbjct: 1 LDPGIDHLYAIKTIEEVHAAGGKIKTF 27
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 23.8 bits (50), Expect = 7.1
Identities = 10/61 (16%), Positives = 19/61 (31%)
Query: 1 MTSIIKMTSLSGTMDESPPCYLLQVDEFKILLDCGWDEMFSMDFVKELKRHVHHIDAVLL 60
+ M LL VDE + G D + +L++ + + L
Sbjct: 121 IAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMAL 180
Query: 61 S 61
+
Sbjct: 181 T 181
>d1m5sa1 d.58.33.1 (A:1-145)
Formylmethanofuran:tetrahydromethanopterin
formyltransferase {Archaeon Methanosarcina barkeri
[TaxId: 2208]}
Length = 145
Score = 23.1 bits (50), Expect = 8.4
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 57 AVLLSYPDVAHLG-ALPYMVGKCGLSCP---IFATIP 89
V + L L +G+C L+ P +F +P
Sbjct: 73 YVQICTFKYEALEEQLLERIGQCVLTAPTTAVFNGLP 109
>d1r8ja2 c.23.1.5 (A:1-135) N-terminal domain of the circadian
clock protein KaiA {Synechococcus elongatus [TaxId:
32046]}
Length = 135
Score = 23.2 bits (50), Expect = 8.7
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 43 DFVKELKRHVHHIDAVLL 60
++ + H ID ++L
Sbjct: 39 MLLEYAQTHRDQIDCLIL 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.143 0.448
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 461,152
Number of extensions: 19802
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 31
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.5 bits)