BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17635
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P20241|NRG_DROME Neuroglian OS=Drosophila melanogaster GN=Nrg PE=1 SV=2
Length = 1302
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/99 (69%), Positives = 84/99 (84%), Gaps = 1/99 (1%)
Query: 3 SDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPGFNE 62
++TVA AGWFIGM+LA+AF+I++ I++C+I+RNRGGKY VH+RE A+GR DYPEE GF+E
Sbjct: 1125 NETVANAGWFIGMMLALAFIIILFIIICIIRRNRGGKYDVHDRELANGRRDYPEEGGFHE 1184
Query: 63 YSQPLDGKPRTRSSMSSEKHP-VESDTDSMAEYGDGDTG 100
YSQPLD K R S+SS P VESDTDSMAEYGDGDTG
Sbjct: 1185 YSQPLDNKSAGRQSVSSANKPGVESDTDSMAEYGDGDTG 1223
>sp|O00533|CHL1_HUMAN Neural cell adhesion molecule L1-like protein OS=Homo sapiens GN=CHL1
PE=1 SV=4
Length = 1208
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 65/103 (63%), Gaps = 10/103 (9%)
Query: 4 DTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYP--EEPGFN 61
D ++T GWFIG++ AIA L L+L+ VC +KRNRGGKY+V E+E H + ++ F
Sbjct: 1075 DDISTQGWFIGLMCAIALLTLLLLTVCFVKRNRGGKYSVKEKEDLHPDPEIQSVKDETFG 1134
Query: 62 EYS----QPLDGKPRTRSSMSSEKHPVESDTDSMAEYGDGDTG 100
EYS +PL G R S++ + P ES DS+ EYG+GD G
Sbjct: 1135 EYSDSDEKPLKGSLR---SLNRDMQPTES-ADSLVEYGEGDHG 1173
>sp|Q92823|NRCAM_HUMAN Neuronal cell adhesion molecule OS=Homo sapiens GN=NRCAM PE=1 SV=3
Length = 1304
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 6/104 (5%)
Query: 6 VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDY---PEEPG-FN 61
+AT GWFIG++ A+A LIL+L++VC I+RN+GGKY V E+E AH + E+ G F
Sbjct: 1164 IATQGWFIGLMCAVALLILILLIVCFIRRNKGGKYPVKEKEDAHADPEIQPMKEDDGTFG 1223
Query: 62 EYSQPLDGKPRTRSSMSSEKHPV--ESDTDSMAEYGDGDTGTKN 103
EYS D KP + S + V E DS+ +YG+G G N
Sbjct: 1224 EYSDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFN 1267
>sp|P97686|NRCAM_RAT Neuronal cell adhesion molecule OS=Rattus norvegicus GN=Nrcam PE=1
SV=2
Length = 1214
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 6/104 (5%)
Query: 6 VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGR---HDYPEEPG-FN 61
+AT GWFIG++ A+A LIL+L++VC I+RN+GGKY V E+E AH E+ G F
Sbjct: 1074 IATQGWFIGLMCAVALLILILLIVCFIRRNKGGKYPVKEKEDAHADPEIQPMKEDDGTFG 1133
Query: 62 EYSQPLDGKPRTRSSMSSEKHPV--ESDTDSMAEYGDGDTGTKN 103
EYS D KP + S + V E DS+ +YG+G G N
Sbjct: 1134 EYSDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFN 1177
>sp|Q810U4|NRCAM_MOUSE Neuronal cell adhesion molecule OS=Mus musculus GN=Nrcam PE=1 SV=2
Length = 1256
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 6/104 (5%)
Query: 6 VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDY---PEEPG-FN 61
+AT GWFIG++ A+A LIL+L++VC I+RN+GGKY V E+E AH + E+ G F
Sbjct: 1116 IATQGWFIGLMCAVALLILILLIVCFIRRNKGGKYPVKEKEDAHADPEIQPMKEDDGTFG 1175
Query: 62 EYSQPLDGKPRTRSSMSSEKHPV--ESDTDSMAEYGDGDTGTKN 103
EYS D KP + S + V E DS+ +YG+G G N
Sbjct: 1176 EYSDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFN 1219
>sp|P70232|CHL1_MOUSE Neural cell adhesion molecule L1-like protein OS=Mus musculus GN=Chl1
PE=1 SV=2
Length = 1209
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 64/106 (60%), Gaps = 10/106 (9%)
Query: 4 DTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDY--PEEPGFN 61
D ++T GWFIG++ AIA L L+L+ +C +KRNRGGKY+V E+E H + ++ F
Sbjct: 1076 DDISTQGWFIGLMCAIALLTLILLTICFVKRNRGGKYSVKEKEDLHPDPEVQSAKDETFG 1135
Query: 62 EYS----QPLDGKPRTRSSMSSEKHPVESDTDSMAEYGDGDTGTKN 103
EYS +PL G R S++ P ES DS+ EYG+GD N
Sbjct: 1136 EYSDSDEKPLKGSLR---SLNRNMQPTES-ADSLVEYGEGDQSIFN 1177
>sp|P35331|NRCAM_CHICK Neuronal cell adhesion molecule OS=Gallus gallus PE=1 SV=1
Length = 1284
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 10/108 (9%)
Query: 6 VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDY---PEEPG-FN 61
+AT GWFIG++ A+A LIL+L++VC I+RN+GGKY V E+E AH + E+ G F
Sbjct: 1140 IATQGWFIGLMCAVALLILILLIVCFIRRNKGGKYPVKEKEDAHADPEIQPMKEDDGTFG 1199
Query: 62 EY----SQPLDGKPRTRSSMSSEKHPV--ESDTDSMAEYGDGDTGTKN 103
EY S D KP + S + V E DS+ +YG+G G N
Sbjct: 1200 EYRSLESDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFN 1247
>sp|O94856|NFASC_HUMAN Neurofascin OS=Homo sapiens GN=NFASC PE=1 SV=4
Length = 1347
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 9/103 (8%)
Query: 6 VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHE-REAAHGRHDYPEEPGFNEYS 64
+AT GWFIG++ AIA L+L+L++VC IKR+RGGKY V E ++ G D EE G +YS
Sbjct: 1212 IATQGWFIGLMCAIALLVLILLIVCFIKRSRGGKYPVREKKDVPLGPEDPKEEDGSFDYS 1271
Query: 65 ----QPLDGKPRTRSSMSSEKHPVESDTDSMAEYGDGDTGTKN 103
+PL G +++S+ ESD DS+ +YG+G G N
Sbjct: 1272 DEDNKPLQG---SQTSLDGTIKQQESD-DSLVDYGEGGEGQFN 1310
>sp|P97685|NFASC_RAT Neurofascin OS=Rattus norvegicus GN=Nfasc PE=1 SV=2
Length = 1240
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 9/103 (8%)
Query: 6 VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHE-REAAHGRHDYPEEPGFNEYS 64
+AT GWFIG++ AIA L+L+L++VC IKR+RGGKY V E ++ G D EE G +YS
Sbjct: 1105 IATQGWFIGLMCAIALLVLILLIVCFIKRSRGGKYPVREKKDVPLGPEDPKEEDGSFDYS 1164
Query: 65 ----QPLDGKPRTRSSMSSEKHPVESDTDSMAEYGDGDTGTKN 103
+PL G +++S+ ESD DS+ +YG+G G N
Sbjct: 1165 DEDNKPLQG---SQTSLDGTIKQQESD-DSLVDYGEGGEGQFN 1203
>sp|Q810U3|NFASC_MOUSE Neurofascin OS=Mus musculus GN=Nfasc PE=1 SV=1
Length = 1240
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 9/103 (8%)
Query: 6 VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHE-REAAHGRHDYPEEPGFNEYS 64
+AT GWFIG++ AIA L+L+L++VC IKR+RGGKY V E ++ G D EE G +YS
Sbjct: 1105 IATQGWFIGLMCAIALLVLILLIVCFIKRSRGGKYPVREKKDVPLGPEDPKEEDGSFDYS 1164
Query: 65 ----QPLDGKPRTRSSMSSEKHPVESDTDSMAEYGDGDTGTKN 103
+PL G +++S+ ESD DS+ +YG+G G N
Sbjct: 1165 DEDNKPLQG---SQTSLDGTIKQQESD-DSLVDYGEGGEGQFN 1203
>sp|O42414|NFASC_CHICK Neurofascin OS=Gallus gallus GN=NFASC PE=1 SV=1
Length = 1369
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 15/108 (13%)
Query: 6 VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAH----------GRHDYP 55
+AT GWFIG++ AIA L+L+L++VC IKR+RGGKY V + + H G DY
Sbjct: 1230 IATQGWFIGLMCAIALLVLILLIVCFIKRSRGGKYPVRDNKDEHLNPEDKNVEDGSFDY- 1288
Query: 56 EEPGFNEYSQPLDGKPRTRSSMSSEKHPVESDTDSMAEYGDGDTGTKN 103
+E ++PL P +++S+ ESD DS+ +YG+G G N
Sbjct: 1289 RSLESDEDNKPL---PNSQTSLDGTIKQQESD-DSLVDYGEGGEGQFN 1332
>sp|Q90478|L1CA1_DANRE Neural cell adhesion molecule L1.1 (Fragment) OS=Danio rerio
GN=nadl1.1 PE=2 SV=1
Length = 1197
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 7 ATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHG--RHDYPEEPGFNEYS 64
AT GWFIG++ A+ L+LVL+L+C IK+++GGKY+V ++E G + ++ F EY
Sbjct: 1050 ATEGWFIGLISALVLLLLVLLLLCYIKKSKGGKYSVKDKEEGQGDAANQKLKDDAFGEYR 1109
Query: 65 QPLDGKPRTRSSMSSEKHPVESDTDSMAEYGD 96
+ S S S DS+A+YGD
Sbjct: 1110 SLESDMEKCSISQPSGCESKRSSNDSLADYGD 1141
>sp|P32004|L1CAM_HUMAN Neural cell adhesion molecule L1 OS=Homo sapiens GN=L1CAM PE=1 SV=2
Length = 1257
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 62/102 (60%), Gaps = 8/102 (7%)
Query: 1 MPSDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYP--EEP 58
+P AT GWFIG + AI L+LVL+++C IKR++GGKY+V ++E + ++
Sbjct: 1112 LPPAGFATEGWFIGFVSAIILLLLVLLILCFIKRSKGGKYSVKDKEDTQVDSEARPMKDE 1171
Query: 59 GFNEY-SQPLDGKPR----TRSSMSSEKHPVESDTDSMAEYG 95
F EY S D + + ++ S++ + P+ SD DS+A+YG
Sbjct: 1172 TFGEYRSLESDNEEKAFGSSQPSLNGDIKPLGSD-DSLADYG 1212
>sp|P11627|L1CAM_MOUSE Neural cell adhesion molecule L1 OS=Mus musculus GN=L1cam PE=1 SV=1
Length = 1260
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 8/98 (8%)
Query: 5 TVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYP--EEPGFNE 62
+ A+ GWFI + AI L+L+L+++C IKR++GGKY+V ++E + ++ F E
Sbjct: 1119 SFASEGWFIAFVSAIILLLLILLILCFIKRSKGGKYSVKDKEDTQVDSEARPMKDETFGE 1178
Query: 63 Y-SQPLDGKPR----TRSSMSSEKHPVESDTDSMAEYG 95
Y S D + + ++ S++ + P+ SD DS+A+YG
Sbjct: 1179 YRSLESDNEEKAFGSSQPSLNGDIKPLGSD-DSLADYG 1215
>sp|Q05695|L1CAM_RAT Neural cell adhesion molecule L1 OS=Rattus norvegicus GN=L1cam PE=2
SV=3
Length = 1259
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 8/98 (8%)
Query: 5 TVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYP--EEPGFNE 62
+ A+ GWFI + AI L+L+L+++C IKR++GGKY+V ++E + ++ F E
Sbjct: 1118 SFASEGWFIAFVSAIILLLLILLILCFIKRSKGGKYSVKDKEDTQVDSEARPMKDETFGE 1177
Query: 63 Y-SQPLDGKPR----TRSSMSSEKHPVESDTDSMAEYG 95
Y S D + + ++ S++ + P+ SD DS+A+YG
Sbjct: 1178 YRSLESDNEEKAFGSSQPSLNGDIKPLGSD-DSLADYG 1214
>sp|Q03696|NGCA_CHICK Neuronal-glial cell adhesion molecule OS=Gallus gallus PE=1 SV=2
Length = 1266
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 1 MPSDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHERE 46
P V T GWFIG + ++ L+L+L+++C IKR++GGKY+V ++E
Sbjct: 1122 QPGGGVCTKGWFIGFVSSVVLLLLILLILCFIKRSKGGKYSVKDKE 1167
>sp|Q98902|L1CAM_TAKRU Neural cell adhesion molecule L1 OS=Takifugu rubripes GN=l1cam PE=3
SV=1
Length = 1277
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 35/42 (83%)
Query: 5 TVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHERE 46
+ AT GWFIG++ A+ L+LVL+++C IKR++GGKY+V ++E
Sbjct: 1129 SFATQGWFIGVVSAVVLLLLVLLILCFIKRSKGGKYSVKDKE 1170
>sp|Q90479|L1CA2_DANRE Neural cell adhesion molecule L1.2 (Fragment) OS=Danio rerio
GN=nadl1.2 PE=2 SV=1
Length = 216
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 8 TAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPGFNE 62
T WFIG++ A+ L+LVL+++C IKR++GGKY+V E+E G+ D P NE
Sbjct: 70 TESWFIGLISALVLLLLVLLILCFIKRSKGGKYSVKEKE--EGQIDSEARPMNNE 122
>sp|P23468|PTPRD_HUMAN Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens
GN=PTPRD PE=1 SV=2
Length = 1912
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 11 WFIGMLLAIAFLILVLILVCLIKRNRG 37
W +G +LA+ F+I ++I + L KR R
Sbjct: 1269 WVVGPVLAVVFIICIVIAILLYKRKRA 1295
>sp|Q64487|PTPRD_MOUSE Receptor-type tyrosine-protein phosphatase delta OS=Mus musculus
GN=Ptprd PE=1 SV=3
Length = 1912
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 11 WFIGMLLAIAFLILVLILVCLIKRNRG 37
W +G +LA+ F+I ++I + L KR R
Sbjct: 1269 WVVGPVLAVVFIICIVIAILLYKRKRA 1295
>sp|A1XQY1|NR3BA_DANRE Neurexin-3b OS=Danio rerio GN=nrxn3b PE=2 SV=1
Length = 1686
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 4 DTVATAGWFIGMLLAIAFLILVLILVCLIKRNRG-GKYAVHEREAAHGRHDYPEEPGFNE 62
++ +T G +G++ A A IL+L+ RNR G Y V E +Y N
Sbjct: 1605 ESSSTTGMVVGIVSAAALCILILLYAMYKYRNRDEGSYQVDE------TRNYISNSAQNN 1658
Query: 63 YSQPLDGKPRTRSSMSSEKHPVESDTD 89
+ D +P T+ +S K P + D +
Sbjct: 1659 GTVVKDKQPSTKG--ASNKRPKDKDKE 1683
>sp|P39570|GERBB_BACSU Spore germination protein B2 OS=Bacillus subtilis (strain 168)
GN=gerBB PE=2 SV=2
Length = 368
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 3 SDTVATAGWFIGMLLAIAFLILVLILVCLIKRNRG 37
++T + +GW + +L + F+I+VL+ + +++N G
Sbjct: 34 AETGSPSGWLMILLQGVIFIIIVLLFLPFLQKNSG 68
>sp|A1XQY3|NR3BB_DANRE Neurexin-3b-beta OS=Danio rerio GN=nrxn3b PE=2 SV=1
Length = 675
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 4 DTVATAGWFIGMLLAIAFLILVLILVCLIKRNRG-GKYAVHEREAAHGRHDYPEEPGFNE 62
++ +T G +G++ A A IL+L+ RNR G Y V E +Y N
Sbjct: 594 ESSSTTGMVVGIVSAAALCILILLYAMYKYRNRDEGSYQVDE------TRNYISNSAQNN 647
Query: 63 YSQPLDGKPRTRSSMSSEKHPVESDTD 89
+ D +P T+ +S K P + D +
Sbjct: 648 GTVVKDKQPSTKG--ASNKRPKDKDKE 672
>sp|Q09508|DHSA_CAEEL Succinate dehydrogenase [ubiquinone] flavoprotein subunit,
mitochondrial OS=Caenorhabditis elegans GN=sdha-1 PE=1
SV=3
Length = 646
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 44 EREAAHGRHDYPEEPGFNEYSQPLDGKPRTRSSMSSEKHPV 84
E AH R D+P+ +YS+PL+G+ + KH +
Sbjct: 569 ESRGAHARDDFPDRLDELDYSKPLEGQTKKELKDHWRKHSI 609
>sp|Q28ED0|DHSA_XENTR Succinate dehydrogenase [ubiquinone] flavoprotein subunit,
mitochondrial OS=Xenopus tropicalis GN=sdha PE=2 SV=1
Length = 665
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 22 LILVLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPGFNEYSQPLDGKPRTRSSMSSEK 81
L L +++C ++ G + A E AH R DY +YS+P+ G+ + S K
Sbjct: 569 LELQNLMLCALQTIYGAE-ARKESRGAHAREDYKVRIDEYDYSKPIQGQQKKSFSEHWRK 627
Query: 82 HPV 84
H +
Sbjct: 628 HTL 630
>sp|Q00383|YCF1_EPIVI Putative membrane protein ycf1 OS=Epifagus virginiana GN=ycf1 PE=3
SV=1
Length = 1738
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 5 TVATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYAVHE 44
T + GW IG +L I +L LVL+ + R KY V E
Sbjct: 170 TSSFVGWLIGHILLIKWLGLVLVWIRQNNYIRSNKYLVSE 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,941,004
Number of Sequences: 539616
Number of extensions: 1660577
Number of successful extensions: 4440
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 4386
Number of HSP's gapped (non-prelim): 53
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)