Query psy17635
Match_columns 103
No_of_seqs 99 out of 124
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 19:05:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17635.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17635hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q55_A EP-cadherin, C-cadherin 93.0 0.018 6.2E-07 50.3 0.0 36 6-41 702-737 (880)
2 2knc_A Integrin alpha-IIB; tra 92.6 0.082 2.8E-06 32.5 2.6 30 7-36 9-43 (54)
3 2k9y_A Ephrin type-A receptor 91.5 0.15 5E-06 28.6 2.7 27 8-34 11-38 (41)
4 2l8s_A Integrin alpha-1; trans 90.3 0.24 8.2E-06 30.5 3.0 29 8-36 7-40 (54)
5 2k1a_A Integrin alpha-IIB; sin 87.1 0.63 2.1E-05 27.1 3.2 29 8-36 8-41 (42)
6 1cd1_A CD1, MCD1D.1; immunolog 83.0 0.24 8.1E-06 37.9 0.0 19 21-39 294-312 (315)
7 2ks1_B Epidermal growth factor 82.6 0.82 2.8E-05 26.8 2.3 23 13-35 15-38 (44)
8 2knc_B Integrin beta-3; transm 80.1 1.8 6.3E-05 27.8 3.5 21 9-29 11-31 (79)
9 3lb6_C IL-13, interleukin-13 r 79.8 0.36 1.2E-05 37.2 0.0 25 9-33 339-363 (380)
10 2jwa_A Receptor tyrosine-prote 79.3 0.95 3.3E-05 26.7 1.7 30 7-36 9-39 (44)
11 2l2t_A Receptor tyrosine-prote 78.9 1.3 4.5E-05 26.0 2.3 24 12-35 13-37 (44)
12 2w1k_A Putative sortase; pilus 78.8 0.4 1.4E-05 36.6 0.0 27 11-37 225-251 (252)
13 2k1k_A Ephrin type-A receptor 76.5 1.8 6.3E-05 24.4 2.4 9 27-35 29-37 (38)
14 2klu_A T-cell surface glycopro 74.4 2.6 8.9E-05 27.1 2.9 19 15-33 13-33 (70)
15 2jo1_A Phospholemman; FXYD1, N 73.5 2 6.7E-05 27.8 2.2 17 13-29 19-35 (72)
16 1iij_A ERBB-2 receptor protein 72.9 0.94 3.2E-05 25.6 0.5 10 27-36 26-35 (35)
17 2k9j_B Integrin beta-3; transm 69.5 7 0.00024 22.4 3.8 23 7-29 8-30 (43)
18 2l34_A TYRO protein tyrosine k 66.1 5.8 0.0002 21.7 2.8 14 21-34 19-32 (33)
19 2l6w_A Beta-type platelet-deri 66.5 1.6 5.4E-05 25.2 0.0 18 16-33 14-31 (39)
20 1zza_A Stannin, AG8_1; helix, 61.5 9.5 0.00032 25.1 3.6 25 12-36 17-42 (90)
21 1s7q_A H-2KB, H-2 class I hist 58.8 2 6.9E-05 33.5 0.0 9 13-21 284-292 (348)
22 3arc_J Photosystem II reaction 52.0 18 0.00061 20.8 3.3 19 9-27 9-27 (40)
23 2zxe_G FXYD10, phospholemman-l 50.3 12 0.00042 24.2 2.7 18 12-29 21-38 (74)
24 2lk9_A Bone marrow stromal ant 50.1 21 0.0007 20.0 3.3 14 22-35 19-32 (35)
25 2jp3_A FXYD domain-containing 48.3 10 0.00036 24.1 2.1 18 12-29 19-36 (67)
26 4hkr_A Calcium release-activat 46.0 13 0.00045 28.3 2.7 26 9-34 114-139 (214)
27 1fjk_A Cardiac phospholamban; 44.8 17 0.00058 21.8 2.5 22 8-29 28-49 (52)
28 2llm_A Amyloid beta A4 protein 47.9 5.4 0.00019 23.4 0.0 27 8-34 15-42 (43)
29 3hb3_B Cytochrome C oxidase su 40.5 22 0.00077 27.7 3.4 14 19-32 74-87 (298)
30 2kse_A Sensor protein QSEC; me 38.3 28 0.00095 22.3 3.1 24 11-34 162-185 (186)
31 2akh_X Protein-export membrane 36.9 41 0.0014 21.1 3.6 13 26-38 16-28 (77)
32 1cz6_A Protein (androctonin); 35.7 12 0.0004 19.5 0.7 10 32-41 9-18 (26)
33 2gsm_B Cytochrome C oxidase su 34.9 35 0.0012 25.9 3.6 14 19-32 43-56 (262)
34 1jb0_X Photosystem I subunit P 33.7 32 0.0011 19.2 2.4 15 8-23 12-26 (35)
35 3j0f_E E1 envelope glycoprotei 33.0 36 0.0012 28.2 3.6 9 9-17 407-415 (439)
36 1vry_A Glycine receptor alpha- 30.1 45 0.0016 21.1 3.0 29 9-37 36-64 (76)
37 3j1r_A Archaeal adhesion filam 29.4 39 0.0013 17.7 2.1 10 17-26 5-14 (26)
38 1z65_A PRPLP, prion-like prote 29.3 33 0.0011 18.6 1.8 12 10-21 7-18 (30)
39 1jdm_A Sarcolipin; helix, memb 28.1 26 0.0009 19.0 1.3 10 26-35 19-28 (31)
40 3j0c_A E1 envelope glycoprotei 28.0 21 0.00071 29.7 1.3 7 10-16 408-414 (442)
41 1pi7_A VPU protein, U ORF prot 27.3 77 0.0026 17.5 3.3 12 17-28 9-20 (36)
42 2jln_A MHP1; hydantoin, transp 24.5 49 0.0017 26.6 2.9 14 33-46 448-461 (501)
43 2h8a_A Microsomal glutathione 22.7 65 0.0022 21.9 2.9 35 6-40 7-41 (154)
44 3qho_A Endoglucanase, 458AA lo 22.5 18 0.00062 29.2 0.0 24 13-36 434-457 (458)
45 3mk7_C Cytochrome C oxidase, C 22.5 69 0.0024 24.1 3.2 21 8-28 55-75 (311)
46 2l35_A DAP12-NKG2C_TM; immunor 21.1 85 0.0029 19.6 2.9 23 13-35 10-33 (63)
47 2wy3_A MHC class I polypeptide 20.2 22 0.00074 27.0 0.0 8 12-19 291-298 (319)
No 1
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=92.96 E-value=0.018 Score=50.32 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhheeecCCCccc
Q psy17635 6 VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYA 41 (103)
Q Consensus 6 ~at~gWfIg~~~ai~lLllilli~C~i~R~rGgKY~ 41 (103)
+...++++.++|+++||+++|+++|+.||++..|-+
T Consensus 702 l~~~aii~il~~~~~ll~~~ll~~~~~~~~~~~k~~ 737 (880)
T 1q55_A 702 FDLPIILVILGSVLALLILFLLLLLFLKRKKVVKEP 737 (880)
T ss_dssp ------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCC
Confidence 444455555666666666666666665554444444
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=92.58 E-value=0.082 Score=32.51 Aligned_cols=30 Identities=27% Similarity=0.524 Sum_probs=15.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH--H---hheeecC
Q psy17635 7 ATAGWFIGMLLAIAFLILVLIL--V---CLIKRNR 36 (103)
Q Consensus 7 at~gWfIg~~~ai~lLllilli--~---C~i~R~r 36 (103)
....|+|.+-+...||+|.+++ + -|.||++
T Consensus 9 ~vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 3456766554443444433333 2 4557765
No 3
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=91.54 E-value=0.15 Score=28.60 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=12.8
Q ss_pred hhhH-HHHHHHHHHHHHHHHHHHhheee
Q psy17635 8 TAGW-FIGMLLAIAFLILVLILVCLIKR 34 (103)
Q Consensus 8 t~gW-fIg~~~ai~lLllilli~C~i~R 34 (103)
+..+ .++++.++++|+++++++++++|
T Consensus 11 ~~~~I~~~vv~Gv~ll~~iv~~~~~~~r 38 (41)
T 2k9y_A 11 GNLAVIGGVAVGVVLLLVLAGVGFFIHR 38 (41)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred ceEEEEeehhHHHHHHHHHHHHheeEee
Confidence 3355 34455556665523344444444
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=90.26 E-value=0.24 Score=30.47 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHHHH--H---HhheeecC
Q psy17635 8 TAGWFIGMLLAIAFLILVLI--L---VCLIKRNR 36 (103)
Q Consensus 8 t~gWfIg~~~ai~lLllill--i---~C~i~R~r 36 (103)
...|+|.+-....||+|+++ + +-|.||+|
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILALWKIGFFKRPL 40 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 34676654443333333333 3 24667776
No 5
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=87.13 E-value=0.63 Score=27.08 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-----hheeecC
Q psy17635 8 TAGWFIGMLLAIAFLILVLILV-----CLIKRNR 36 (103)
Q Consensus 8 t~gWfIg~~~ai~lLllilli~-----C~i~R~r 36 (103)
...|.|.+-+...+|+|.+++. -|.||+|
T Consensus 8 vp~wiIi~s~l~GLllL~li~~~LwK~GFFkR~~ 41 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNR 41 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 3467665544433444333332 3556654
No 6
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=83.02 E-value=0.24 Score=37.95 Aligned_cols=19 Identities=5% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHhheeecCCCc
Q psy17635 21 FLILVLILVCLIKRNRGGK 39 (103)
Q Consensus 21 lLllilli~C~i~R~rGgK 39 (103)
|+||++|++++++|+++.|
T Consensus 294 l~ll~~~~~~~~~~~~~~~ 312 (315)
T 1cd1_A 294 LVVVGAVVYYIWRRRSAYQ 312 (315)
T ss_dssp -------------------
T ss_pred HHHHHHHHHhheehhcCCC
Confidence 4444455344456655544
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=82.60 E-value=0.82 Score=26.79 Aligned_cols=23 Identities=26% Similarity=0.532 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHH-hheeec
Q psy17635 13 IGMLLAIAFLILVLILV-CLIKRN 35 (103)
Q Consensus 13 Ig~~~ai~lLllilli~-C~i~R~ 35 (103)
.|++.+++++++|++.+ +|++|.
T Consensus 15 ~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 15 TGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eehhHHHHHHHHHHHHHHHHhhhh
Confidence 56666666666555554 444444
No 8
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=80.13 E-value=1.8 Score=27.80 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy17635 9 AGWFIGMLLAIAFLILVLILV 29 (103)
Q Consensus 9 ~gWfIg~~~ai~lLllilli~ 29 (103)
.+-++|++.+|+|+-|++|++
T Consensus 11 ~~Iv~gvi~gilliGllllli 31 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLI 31 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 344456666555555544443
No 9
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*
Probab=79.83 E-value=0.36 Score=37.25 Aligned_cols=25 Identities=24% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhee
Q psy17635 9 AGWFIGMLLAIAFLILVLILVCLIK 33 (103)
Q Consensus 9 ~gWfIg~~~ai~lLllilli~C~i~ 33 (103)
.+++|.+|.++++++|++++.|++.
T Consensus 339 ~~~~~~~i~~~~~~~~~l~~~~~~~ 363 (380)
T 3lb6_C 339 KTLLRFWLPFGFILILVIFVTGLLL 363 (380)
T ss_dssp -------------------------
T ss_pred CccEEEEhHHHHHHHHHHHHHHHHH
Confidence 3466666666666666677777763
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=79.29 E-value=0.95 Score=26.65 Aligned_cols=30 Identities=20% Similarity=0.353 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHH-HHhheeecC
Q psy17635 7 ATAGWFIGMLLAIAFLILVLI-LVCLIKRNR 36 (103)
Q Consensus 7 at~gWfIg~~~ai~lLllill-i~C~i~R~r 36 (103)
....++++.+..+++++++++ +.+|+||+|
T Consensus 9 ~~~~~Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhheehhh
Confidence 344566666666554444433 356666654
No 11
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=78.92 E-value=1.3 Score=25.99 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH-hheeec
Q psy17635 12 FIGMLLAIAFLILVLILV-CLIKRN 35 (103)
Q Consensus 12 fIg~~~ai~lLllilli~-C~i~R~ 35 (103)
-.|++..++++++|++.+ +|++|.
T Consensus 13 A~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 13 AAGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeehHHHHHHHHHHHHHHHHhhhh
Confidence 345666566665555444 455543
No 12
>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae}
Probab=78.83 E-value=0.4 Score=36.64 Aligned_cols=27 Identities=33% Similarity=0.604 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeecCC
Q psy17635 11 WFIGMLLAIAFLILVLILVCLIKRNRG 37 (103)
Q Consensus 11 WfIg~~~ai~lLllilli~C~i~R~rG 37 (103)
|++..+.++++|++++++..++|+.||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~r~ 251 (252)
T 2w1k_A 225 WLYRGLVVLAFLGILFVLWKLARLLRG 251 (252)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444444444555555555555555554
No 13
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=76.54 E-value=1.8 Score=24.39 Aligned_cols=9 Identities=11% Similarity=0.180 Sum_probs=3.7
Q ss_pred HHHhheeec
Q psy17635 27 ILVCLIKRN 35 (103)
Q Consensus 27 li~C~i~R~ 35 (103)
.++||..|+
T Consensus 29 ~l~~~~~rr 37 (38)
T 2k1k_A 29 GILVFRSRR 37 (38)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHeec
Confidence 333444444
No 14
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=74.38 E-value=2.6 Score=27.08 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=10.8
Q ss_pred HHHHHHHHHH-H-HHHHhhee
Q psy17635 15 MLLAIAFLIL-V-LILVCLIK 33 (103)
Q Consensus 15 ~~~ai~lLll-i-lli~C~i~ 33 (103)
++.+++.|++ + ++|+|++|
T Consensus 13 vlGg~~~lll~~glcI~ccvk 33 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSVR 33 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhhH
Confidence 5555554443 3 67777773
No 15
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=73.54 E-value=2 Score=27.80 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17635 13 IGMLLAIAFLILVLILV 29 (103)
Q Consensus 13 Ig~~~ai~lLllilli~ 29 (103)
-||++|.+|.++-++|+
T Consensus 19 GGLifA~vLfi~GI~ii 35 (72)
T 2jo1_A 19 GGLVIAGILFILGILIV 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 46666654444444443
No 16
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=72.92 E-value=0.94 Score=25.55 Aligned_cols=10 Identities=50% Similarity=0.713 Sum_probs=5.2
Q ss_pred HHHhheeecC
Q psy17635 27 ILVCLIKRNR 36 (103)
Q Consensus 27 li~C~i~R~r 36 (103)
.+..++||+|
T Consensus 26 ~~~~~iRRr~ 35 (35)
T 1iij_A 26 VVGILIKRRR 35 (35)
T ss_dssp TTTHHHHHCC
T ss_pred HhheEEeecC
Confidence 3345566654
No 17
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=69.52 E-value=7 Score=22.40 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q psy17635 7 ATAGWFIGMLLAIAFLILVLILV 29 (103)
Q Consensus 7 at~gWfIg~~~ai~lLllilli~ 29 (103)
...+-+.|++.+|+++=+++|++
T Consensus 8 n~~~Iv~gvi~~ivliGl~lLli 30 (43)
T 2k9j_B 8 DILVVLLSVMGAILLIGLAALLI 30 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEeehHHHHHHHHHHHHHHHHHH
Confidence 33344456666666555554444
No 18
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=66.14 E-value=5.8 Score=21.75 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=6.5
Q ss_pred HHHHHHHHHhheee
Q psy17635 21 FLILVLILVCLIKR 34 (103)
Q Consensus 21 lLllilli~C~i~R 34 (103)
..+++++.+.|+.|
T Consensus 19 ~t~~i~~~vy~~~r 32 (33)
T 2l34_A 19 LTVLIALAVYFLGR 32 (33)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhheec
Confidence 33344444555544
No 19
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=66.47 E-value=1.6 Score=25.23 Aligned_cols=18 Identities=17% Similarity=0.552 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhhee
Q psy17635 16 LLAIAFLILVLILVCLIK 33 (103)
Q Consensus 16 ~~ai~lLllilli~C~i~ 33 (103)
+.|++.++++.||+-+++
T Consensus 14 vlal~vi~iisLIiLi~~ 31 (39)
T 2l6w_A 14 ILALVVLTIISLIILIML 31 (39)
Confidence 334444444444444443
No 20
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=61.47 E-value=9.5 Score=25.14 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH-hheeecC
Q psy17635 12 FIGMLLAIAFLILVLILV-CLIKRNR 36 (103)
Q Consensus 12 fIg~~~ai~lLllilli~-C~i~R~r 36 (103)
+|.+++||+-|-.++|.+ |+.+-+|
T Consensus 17 v~viliavaalg~li~gcwcylrlqr 42 (90)
T 1zza_A 17 VIVILIAIAALGALILGCWCYLRLQR 42 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSCS
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444444 4334344
No 21
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=58.83 E-value=2 Score=33.49 Aligned_cols=9 Identities=0% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q psy17635 13 IGMLLAIAF 21 (103)
Q Consensus 13 Ig~~~ai~l 21 (103)
||++.++++
T Consensus 284 ~~i~~~~~~ 292 (348)
T 1s7q_A 284 MATVAVLVV 292 (348)
T ss_dssp ---------
T ss_pred EEEEeehhh
Confidence 445444433
No 22
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=51.97 E-value=18 Score=20.85 Aligned_cols=19 Identities=11% Similarity=0.506 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy17635 9 AGWFIGMLLAIAFLILVLI 27 (103)
Q Consensus 9 ~gWfIg~~~ai~lLllill 27 (103)
--|+|+.+..++.+-++-+
T Consensus 9 PLWlvgtv~G~~vi~~~gi 27 (40)
T 3arc_J 9 PLWIVATVAGMGVIVIVGL 27 (40)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cEEeeeeehhhhhhheeeE
Confidence 4699999998777655543
No 23
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=50.29 E-value=12 Score=24.16 Aligned_cols=18 Identities=17% Similarity=0.619 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy17635 12 FIGMLLAIAFLILVLILV 29 (103)
Q Consensus 12 fIg~~~ai~lLllilli~ 29 (103)
+-||++|.+|.++-++|+
T Consensus 21 igGLifA~vLfi~GI~ii 38 (74)
T 2zxe_G 21 VVGLIVAAVLCVIGIIIL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eccchhHHHHHHHHHHHH
Confidence 346777755555544444
No 24
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=50.11 E-value=21 Score=20.01 Aligned_cols=14 Identities=21% Similarity=0.467 Sum_probs=5.2
Q ss_pred HHHHHHHHhheeec
Q psy17635 22 LILVLILVCLIKRN 35 (103)
Q Consensus 22 Lllilli~C~i~R~ 35 (103)
.+.+++|+..++-|
T Consensus 19 ~LgV~LI~f~~kAn 32 (35)
T 2lk9_A 19 ILGVPLIIFTIKKK 32 (35)
T ss_dssp HHHHHHHHHC----
T ss_pred HhcchheEEeeecc
Confidence 34455555544433
No 25
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=48.29 E-value=10 Score=24.05 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy17635 12 FIGMLLAIAFLILVLILV 29 (103)
Q Consensus 12 fIg~~~ai~lLllilli~ 29 (103)
.-||++|.+|.++-++|+
T Consensus 19 igGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ecchhhHHHHHHHHHHHH
Confidence 346777755555444443
No 26
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=45.95 E-value=13 Score=28.28 Aligned_cols=26 Identities=23% Similarity=0.689 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheee
Q psy17635 9 AGWFIGMLLAIAFLILVLILVCLIKR 34 (103)
Q Consensus 9 ~gWfIg~~~ai~lLllilli~C~i~R 34 (103)
-+|.......|.|.+.-+.++|+||=
T Consensus 114 ~AW~fST~lGi~LFL~evall~WVKF 139 (214)
T 4hkr_A 114 TAWAFSTLLGLILFLLEIAILCWVKF 139 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhheEEe
Confidence 46888888888887777777888764
No 27
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=44.84 E-value=17 Score=21.77 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q psy17635 8 TAGWFIGMLLAIAFLILVLILV 29 (103)
Q Consensus 8 t~gWfIg~~~ai~lLllilli~ 29 (103)
-|--|+-+...+..|+||.+|+
T Consensus 28 lqelfvnfclilicllli~iiv 49 (52)
T 1fjk_A 28 LQNLFINFCLILIFLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666655555555555554
No 28
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=47.93 E-value=5.4 Score=23.38 Aligned_cols=27 Identities=19% Similarity=0.589 Sum_probs=18.4
Q ss_pred hhhHHHHHHHH-HHHHHHHHHHHhheee
Q psy17635 8 TAGWFIGMLLA-IAFLILVLILVCLIKR 34 (103)
Q Consensus 8 t~gWfIg~~~a-i~lLllilli~C~i~R 34 (103)
+.+=+||++.+ +++..+|++.+.+.||
T Consensus 15 srga~iGL~v~gVai~~vIVvsl~mlRr 42 (43)
T 2llm_A 15 NKGAIIGLMVGGVVIATVIVITLVMLKK 42 (43)
Confidence 45667888844 7777777777766665
No 29
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=40.53 E-value=22 Score=27.69 Aligned_cols=14 Identities=21% Similarity=0.985 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhhe
Q psy17635 19 IAFLILVLILVCLI 32 (103)
Q Consensus 19 i~lLllilli~C~i 32 (103)
|.++++.+++.|++
T Consensus 74 I~v~V~~l~~~~~~ 87 (298)
T 3hb3_B 74 VTIFVCLLLLICIV 87 (298)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444455554
No 30
>2kse_A Sensor protein QSEC; methods development, histidine kinase receptor, membrane domain, two-helical hairpin, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=38.34 E-value=28 Score=22.30 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhheee
Q psy17635 11 WFIGMLLAIAFLILVLILVCLIKR 34 (103)
Q Consensus 11 WfIg~~~ai~lLllilli~C~i~R 34 (103)
|.+.+..+++++++++++...++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~vrr 185 (186)
T 2kse_A 162 AGQLIPWLVALPIMLIIMMVLLGR 185 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333333333333344444444443
No 31
>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X
Probab=36.91 E-value=41 Score=21.05 Aligned_cols=13 Identities=15% Similarity=0.570 Sum_probs=7.2
Q ss_pred HHHHhheeecCCC
Q psy17635 26 LILVCLIKRNRGG 38 (103)
Q Consensus 26 lli~C~i~R~rGg 38 (103)
++++.+..+.||+
T Consensus 16 LI~~VLlQ~~Kg~ 28 (77)
T 2akh_X 16 LVGLIMLQQGKGA 28 (77)
T ss_pred HHHHheeeCCCCC
Confidence 3334556776765
No 32
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=35.69 E-value=12 Score=19.53 Aligned_cols=10 Identities=60% Similarity=0.896 Sum_probs=7.4
Q ss_pred eeecCCCccc
Q psy17635 32 IKRNRGGKYA 41 (103)
Q Consensus 32 i~R~rGgKY~ 41 (103)
|+|.|||-|-
T Consensus 9 icrrrggcyy 18 (26)
T 1cz6_A 9 ICRRRGGCYY 18 (26)
T ss_dssp ECCSSSCCEE
T ss_pred HHHhcCceEE
Confidence 4688898873
No 33
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=34.94 E-value=35 Score=25.87 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhhe
Q psy17635 19 IAFLILVLILVCLI 32 (103)
Q Consensus 19 i~lLllilli~C~i 32 (103)
|.++++.+++.+++
T Consensus 43 I~v~V~~ll~~~~~ 56 (262)
T 2gsm_B 43 ITIFVTLLILYAVW 56 (262)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444445554
No 34
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=33.72 E-value=32 Score=19.20 Aligned_cols=15 Identities=47% Similarity=0.915 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHHH
Q psy17635 8 TAGWFIGMLLAIAFLI 23 (103)
Q Consensus 8 t~gWfIg~~~ai~lLl 23 (103)
..+|.| ++.+|-+|+
T Consensus 12 rt~Wal-llLaINflV 26 (35)
T 1jb0_X 12 RTFWAV-LLLAINFLV 26 (35)
T ss_dssp HHHHHH-HHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHH
Confidence 457988 666666665
No 35
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=33.02 E-value=36 Score=28.25 Aligned_cols=9 Identities=11% Similarity=0.552 Sum_probs=5.6
Q ss_pred hhHHHHHHH
Q psy17635 9 AGWFIGMLL 17 (103)
Q Consensus 9 ~gWfIg~~~ 17 (103)
-.|+-.++.
T Consensus 407 w~W~~~l~g 415 (439)
T 3j0f_E 407 WSWLFALFG 415 (439)
T ss_pred HHHHHHHhc
Confidence 357777763
No 36
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=30.08 E-value=45 Score=21.15 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheeecCC
Q psy17635 9 AGWFIGMLLAIAFLILVLILVCLIKRNRG 37 (103)
Q Consensus 9 ~gWfIg~~~ai~lLllilli~C~i~R~rG 37 (103)
--|+++-++.+.+.||=..++.++.|++.
T Consensus 36 Dvw~~~C~~FVF~aLlEya~V~y~~r~~~ 64 (76)
T 1vry_A 36 DIWLAVCLLFVFSALLEYAAVNFVSRKKK 64 (76)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34665555555554544667777766544
No 37
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=29.43 E-value=39 Score=17.70 Aligned_cols=10 Identities=40% Similarity=0.644 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q psy17635 17 LAIAFLILVL 26 (103)
Q Consensus 17 ~ai~lLllil 26 (103)
.|.+||++|.
T Consensus 5 VA~~lLIvia 14 (26)
T 3j1r_A 5 IATLLLILIA 14 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 38
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=29.31 E-value=33 Score=18.58 Aligned_cols=12 Identities=17% Similarity=0.664 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHH
Q psy17635 10 GWFIGMLLAIAF 21 (103)
Q Consensus 10 gWfIg~~~ai~l 21 (103)
+|-++++|++++
T Consensus 7 ~~wlai~c~LLf 18 (30)
T 1z65_A 7 TWWVAILCMLLA 18 (30)
T ss_dssp SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 677777776543
No 39
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=28.12 E-value=26 Score=19.01 Aligned_cols=10 Identities=40% Similarity=0.703 Sum_probs=4.7
Q ss_pred HHHHhheeec
Q psy17635 26 LILVCLIKRN 35 (103)
Q Consensus 26 lli~C~i~R~ 35 (103)
++++|++-|+
T Consensus 19 vlLi~llVrs 28 (31)
T 1jdm_A 19 VILMWLLVRS 28 (31)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHHh
Confidence 3344555454
No 40
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=27.99 E-value=21 Score=29.72 Aligned_cols=7 Identities=29% Similarity=1.032 Sum_probs=3.6
Q ss_pred hHHHHHH
Q psy17635 10 GWFIGML 16 (103)
Q Consensus 10 gWfIg~~ 16 (103)
.|+-.++
T Consensus 408 ~W~~~l~ 414 (442)
T 3j0c_A 408 TWLTSLL 414 (442)
T ss_dssp HHHHTTS
T ss_pred HHHHHHh
Confidence 4555544
No 41
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=27.29 E-value=77 Score=17.53 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy17635 17 LAIAFLILVLIL 28 (103)
Q Consensus 17 ~ai~lLllilli 28 (103)
.|++.++++.++
T Consensus 9 valivalIiaIV 20 (36)
T 1pi7_A 9 VALVVAIIIAIV 20 (36)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 42
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=24.48 E-value=49 Score=26.56 Aligned_cols=14 Identities=7% Similarity=-0.076 Sum_probs=8.6
Q ss_pred eecCCCcccchhhh
Q psy17635 33 KRNRGGKYAVHERE 46 (103)
Q Consensus 33 ~R~rGgKY~VkeKE 46 (103)
.+..-.||+-++-|
T Consensus 448 ~~~~~~~~~~~~~~ 461 (501)
T 2jln_A 448 VAKTFPLFSEAESR 461 (501)
T ss_dssp HTTTSCSCCGGGGG
T ss_pred Cchhhhhccccccc
Confidence 34447899865533
No 43
>2h8a_A Microsomal glutathione S-transferase 1; membrane protein; HET: GSH; 3.20A {Rattus norvegicus} SCOP: f.56.1.1
Probab=22.72 E-value=65 Score=21.92 Aligned_cols=35 Identities=11% Similarity=-0.040 Sum_probs=20.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhheeecCCCcc
Q psy17635 6 VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKY 40 (103)
Q Consensus 6 ~at~gWfIg~~~ai~lLllilli~C~i~R~rGgKY 40 (103)
..+..|-+-.+++.++++.+++....+-|.|+-+.
T Consensus 7 ~~~~~~~~~~~~a~ll~l~~l~~s~~v~~~R~~~~ 41 (154)
T 2h8a_A 7 MDNEVLMAFTSYATIILAKMMFLSSATAFQRLTNK 41 (154)
T ss_dssp --CHHHHHHHHHHHHHHTTHHHHGGGSCCCCCCCT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45556667777776666666666666666655543
No 44
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A*
Probab=22.51 E-value=18 Score=29.16 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhheeecC
Q psy17635 13 IGMLLAIAFLILVLILVCLIKRNR 36 (103)
Q Consensus 13 Ig~~~ai~lLllilli~C~i~R~r 36 (103)
-+-+|..++|+.+++|-.+.+|+|
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~ 457 (458)
T 3qho_A 434 SKKICGPAILIILAVFSLLLRRAP 457 (458)
T ss_dssp ------------------------
T ss_pred CCeeeHHHHHHHHHHHHHHHHhcc
Confidence 356888888888888877777654
No 45
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=22.47 E-value=69 Score=24.06 Aligned_cols=21 Identities=33% Similarity=0.622 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q psy17635 8 TAGWFIGMLLAIAFLILVLIL 28 (103)
Q Consensus 8 t~gWfIg~~~ai~lLllilli 28 (103)
-.+|++.+++.|++.++.+++
T Consensus 55 p~ww~~~f~~~iv~~~~y~~~ 75 (311)
T 3mk7_C 55 PRWWFLLFIGTLVFGILYLVL 75 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888777654
No 46
>2l35_A DAP12-NKG2C_TM; immunoreceptor, transmembrane assembly, DAP12-NKG2C complex; NMR {Homo sapiens}
Probab=21.13 E-value=85 Score=19.55 Aligned_cols=23 Identities=17% Similarity=0.507 Sum_probs=11.2
Q ss_pred HHHHHH-HHHHHHHHHHHhheeec
Q psy17635 13 IGMLLA-IAFLILVLILVCLIKRN 35 (103)
Q Consensus 13 Ig~~~a-i~lLllilli~C~i~R~ 35 (103)
.|++.+ |++.+++++.+.++-|+
T Consensus 10 aGIIv~DIi~TllLal~VY~~A~~ 33 (63)
T 2l35_A 10 AGIVVGDLVLTVLIALAVYFLGRL 33 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred ehhHHHHHHHHHHHHHHHHhhccc
Confidence 445555 45555555555444333
No 47
>2wy3_A MHC class I polypeptide-related sequence B; immune system-viral protein complex, immune response, innate immunity, structural mimicry; HET: NAG PEU; 1.80A {Homo sapiens} PDB: 1je6_A 1hyr_C 1b3j_A*
Probab=20.20 E-value=22 Score=26.98 Aligned_cols=8 Identities=0% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q psy17635 12 FIGMLLAI 19 (103)
Q Consensus 12 fIg~~~ai 19 (103)
..|++.+|
T Consensus 291 ~~g~~~gl 298 (319)
T 2wy3_A 291 VSAAMPCF 298 (319)
T ss_dssp --------
T ss_pred cchhhhhH
Confidence 44555553
Done!