Query psy17635
Match_columns 103
No_of_seqs 99 out of 124
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 19:05:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17635.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17635hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 56.7 5.1 0.00037 24.4 3.3 14 19-32 39-52 (100)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 46.9 12 0.00087 19.5 3.3 18 10-27 4-21 (34)
3 d1xmec1 f.23.9.1 (C:2-34) Bact 46.4 9.5 0.00069 19.6 2.8 15 16-30 8-22 (33)
4 d3ehbb2 f.17.2.1 (B:1-107) Bac 43.3 11 0.0008 23.2 3.4 11 22-32 48-58 (107)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 36.3 3 0.00022 25.3 -0.3 24 10-33 18-42 (91)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 29.3 17 0.0012 25.8 2.8 34 6-41 23-56 (248)
7 d1ppjd2 f.23.11.1 (D:196-241) 28.2 7.3 0.00053 21.4 0.4 7 29-35 24-30 (46)
8 d2hi7b1 a.29.15.1 (B:14-162) D 23.2 23 0.0016 22.3 2.3 11 11-21 2-12 (149)
9 d1vf5c3 f.23.23.1 (C:250-286) 22.6 53 0.0038 17.1 3.4 18 7-24 4-21 (37)
10 d2axtm1 f.23.35.1 (M:1-36) Pho 20.6 32 0.0024 17.9 2.2 19 12-30 8-26 (36)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=56.69 E-value=5.1 Score=24.42 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhhe
Q psy17635 19 IAFLILVLILVCLI 32 (103)
Q Consensus 19 i~lLllilli~C~i 32 (103)
|.+++..+++.+++
T Consensus 39 I~~~V~~~l~~~~~ 52 (100)
T d3dtub2 39 ITIFVTLLILYAVW 52 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 33333334444444
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=46.95 E-value=12 Score=19.50 Aligned_cols=18 Identities=11% Similarity=0.528 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy17635 10 GWFIGMLLAIAFLILVLI 27 (103)
Q Consensus 10 gWfIg~~~ai~lLllill 27 (103)
-|+|+.+..++.+.++-+
T Consensus 4 LWlv~tv~G~~vi~~vG~ 21 (34)
T d2axtj1 4 LWIVATVAGMGVIVIVGL 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EEEeeehhhhhhHhheee
Confidence 599999998877766543
No 3
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=46.42 E-value=9.5 Score=19.62 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHh
Q psy17635 16 LLAIAFLILVLILVC 30 (103)
Q Consensus 16 ~~ai~lLllilli~C 30 (103)
+..|++|.|++|+.+
T Consensus 8 l~vi~il~l~ilvfw 22 (33)
T d1xmec1 8 LAVILVLTLTILVFW 22 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 4
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=43.34 E-value=11 Score=23.20 Aligned_cols=11 Identities=27% Similarity=1.111 Sum_probs=4.5
Q ss_pred HHHHHHHHhhe
Q psy17635 22 LILVLILVCLI 32 (103)
Q Consensus 22 Lllilli~C~i 32 (103)
++..+++.+++
T Consensus 48 ~V~~~~~~~~~ 58 (107)
T d3ehbb2 48 FVCLLLLICIV 58 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 33334444444
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=36.34 E-value=3 Score=25.30 Aligned_cols=24 Identities=8% Similarity=-0.076 Sum_probs=11.2
Q ss_pred hHHHHHHHH-HHHHHHHHHHHhhee
Q psy17635 10 GWFIGMLLA-IAFLILVLILVCLIK 33 (103)
Q Consensus 10 gWfIg~~~a-i~lLllilli~C~i~ 33 (103)
-|++-.+++ |.+++..+++.|++|
T Consensus 18 ~~~~~~i~~iv~v~V~~~~~~~~~r 42 (91)
T d1fftb2 18 ILTAFGLMLIVVIPAILMAVGFAWK 42 (91)
T ss_dssp HHHHHHHTTTTTTHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhee
Confidence 344444444 444444455555554
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=29.31 E-value=17 Score=25.80 Aligned_cols=34 Identities=9% Similarity=0.105 Sum_probs=17.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhheeecCCCccc
Q psy17635 6 VATAGWFIGMLLAIAFLILVLILVCLIKRNRGGKYA 41 (103)
Q Consensus 6 ~at~gWfIg~~~ai~lLllilli~C~i~R~rGgKY~ 41 (103)
++...|+++++.+++++++. .+.+-+|..-.||-
T Consensus 23 ~~~~~~~~a~~~~~~~~~~~--~vy~s~r~~p~kyi 56 (248)
T d2r6gf1 23 YAQGEYLFAITTLILSSAGL--YIFANRKAYAWRYV 56 (248)
T ss_dssp HGGGCHHHHHHHHHHHHHHH--HHHSSSCCTTHHHH
T ss_pred HHcchHHHHHHHHHHHHheE--EEEEccCccceehh
Confidence 34456666665554433322 23455666666664
No 7
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=28.22 E-value=7.3 Score=21.42 Aligned_cols=7 Identities=43% Similarity=0.634 Sum_probs=3.2
Q ss_pred Hhheeec
Q psy17635 29 VCLIKRN 35 (103)
Q Consensus 29 ~C~i~R~ 35 (103)
+.+++|.
T Consensus 24 ~yy~KR~ 30 (46)
T d1ppjd2 24 VYAMKRH 30 (46)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3445553
No 8
>d2hi7b1 a.29.15.1 (B:14-162) Disulfide bond formation protein DsbB {Escherichia coli [TaxId: 562]}
Probab=23.18 E-value=23 Score=22.33 Aligned_cols=11 Identities=27% Similarity=0.760 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q psy17635 11 WFIGMLLAIAF 21 (103)
Q Consensus 11 WfIg~~~ai~l 21 (103)
|++..++++++
T Consensus 2 wl~~~~~s~~~ 12 (149)
T d2hi7b1 2 WLLMAFTALAL 12 (149)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55544444333
No 9
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.61 E-value=53 Score=17.15 Aligned_cols=18 Identities=17% Similarity=0.479 Sum_probs=10.9
Q ss_pred hhhhHHHHHHHHHHHHHH
Q psy17635 7 ATAGWFIGMLLAIAFLIL 24 (103)
Q Consensus 7 at~gWfIg~~~ai~lLll 24 (103)
...-|+|+++.++++.=+
T Consensus 4 ~Rv~gl~~F~~~v~laQi 21 (37)
T d1vf5c3 4 NRVKWMIAFICLVMLAQL 21 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445677777776555433
No 10
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=20.64 E-value=32 Score=17.92 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy17635 12 FIGMLLAIAFLILVLILVC 30 (103)
Q Consensus 12 fIg~~~ai~lLllilli~C 30 (103)
||+.+..|++=...|+|+.
T Consensus 8 ~iAt~LFilvPt~FLliLy 26 (36)
T d2axtm1 8 LIATALFVLVPSVFLIILY 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444333333333334433
Done!