RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17635
         (103 letters)



>2wy3_A MHC class I polypeptide-related sequence B; immune system-viral
           protein complex, immune response, innate immunity,
           structural mimicry; HET: NAG PEU; 1.80A {Homo sapiens}
           PDB: 1je6_A 1hyr_C 1b3j_A*
          Length = 319

 Score = 26.5 bits (59), Expect = 1.6
 Identities = 4/29 (13%), Positives = 13/29 (44%)

Query: 11  WFIGMLLAIAFLILVLILVCLIKRNRGGK 39
            ++   +    +I++L + C  K+    +
Sbjct: 289 PYVSAAMPCFVIIIILCVPCCKKKTSAAE 317


>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain;
           LCMV, MHC class I, immune escape, immune system; 1.99A
           {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A
           1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A
           1nez_A*
          Length = 348

 Score = 25.6 bits (56), Expect = 3.5
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 2   PSDTVATAGWFIGMLLAIAFLIL---VLILVCLIKRNRGGK 39
           P  TV+       +++  A ++    V  ++ + +RN GGK
Sbjct: 277 PPSTVSNMATVAVLVVLGAAIVTGAVVAFVMKMRRRNTGGK 317


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,573,466
Number of extensions: 81266
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 7
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)