RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17635
         (103 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score = 26.7 bits (58), Expect = 0.50
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 7   ATAGWFIGMLLAIAFLILVL 26
            T  + IG+ L + FL+ + 
Sbjct: 481 ITRFYIIGLFLFLTFLVFLA 500


>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115)
          {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 155

 Score = 26.3 bits (57), Expect = 0.66
 Identities = 8/35 (22%), Positives = 14/35 (40%)

Query: 25 VLILVCLIKRNRGGKYAVHEREAAHGRHDYPEEPG 59
          +L  +CLI+     +  +  R   + R      PG
Sbjct: 8  ILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPG 42


>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
           transmembrane domain M {Rabbit (Oryctolagus cuniculus)
           [TaxId: 9986]}
          Length = 472

 Score = 25.4 bits (55), Expect = 1.6
 Identities = 5/28 (17%), Positives = 13/28 (46%)

Query: 11  WFIGMLLAIAFLILVLILVCLIKRNRGG 38
           W + + +++  + L  IL  + +    G
Sbjct: 445 WLMVLKISLPVIGLDEILKFIARNYLEG 472


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 370,606
Number of extensions: 14111
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 5
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)