Query psy17636
Match_columns 222
No_of_seqs 254 out of 1914
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 19:06:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0339|consensus 100.0 1.2E-43 2.7E-48 305.0 14.4 221 2-222 167-514 (731)
2 KOG0336|consensus 100.0 5.3E-39 1.2E-43 270.7 12.7 210 13-222 167-511 (629)
3 KOG0341|consensus 100.0 1.8E-39 3.8E-44 272.1 8.4 209 12-222 124-467 (610)
4 PTZ00110 helicase; Provisional 100.0 6.3E-37 1.4E-41 277.5 23.2 220 3-222 74-423 (545)
5 KOG0334|consensus 100.0 1.5E-38 3.3E-43 292.4 11.3 219 4-222 310-659 (997)
6 KOG0331|consensus 100.0 5.5E-37 1.2E-41 269.4 10.4 216 7-222 8-387 (519)
7 KOG0333|consensus 100.0 4E-36 8.7E-41 259.5 14.5 194 28-222 215-563 (673)
8 KOG0328|consensus 100.0 1.2E-34 2.6E-39 234.4 14.6 168 54-222 23-312 (400)
9 KOG0330|consensus 100.0 9.9E-34 2.2E-38 237.4 11.3 166 56-222 59-346 (476)
10 PLN00206 DEAD-box ATP-dependen 100.0 5.3E-32 1.2E-36 244.4 21.5 216 6-222 67-414 (518)
11 COG0513 SrmB Superfamily II DN 100.0 3.8E-31 8.3E-36 238.1 17.6 164 58-222 29-319 (513)
12 KOG0338|consensus 100.0 2E-31 4.4E-36 229.9 8.9 164 58-222 181-472 (691)
13 KOG0340|consensus 100.0 1E-29 2.3E-34 211.1 11.8 166 57-222 6-300 (442)
14 KOG0327|consensus 100.0 7.3E-29 1.6E-33 208.0 11.2 164 56-222 24-309 (397)
15 KOG0343|consensus 100.0 1.2E-28 2.6E-33 214.5 12.3 185 31-222 47-361 (758)
16 KOG0326|consensus 99.9 1.4E-28 3E-33 202.3 6.0 163 58-222 85-368 (459)
17 KOG0335|consensus 99.9 5.8E-28 1.3E-32 209.7 10.2 177 46-222 62-383 (482)
18 KOG0346|consensus 99.9 1.6E-27 3.5E-32 202.7 12.0 165 58-222 19-314 (569)
19 KOG0332|consensus 99.9 4.4E-27 9.6E-32 196.6 11.7 166 56-222 88-376 (477)
20 KOG0342|consensus 99.9 1.5E-26 3.2E-31 199.1 13.0 166 57-222 81-376 (543)
21 PRK11634 ATP-dependent RNA hel 99.9 7.3E-26 1.6E-30 207.8 17.7 165 57-222 5-291 (629)
22 PRK11776 ATP-dependent RNA hel 99.9 9.3E-26 2E-30 201.4 17.8 164 57-222 3-288 (460)
23 KOG0345|consensus 99.9 6.4E-26 1.4E-30 194.3 13.3 164 58-222 4-303 (567)
24 PRK04837 ATP-dependent RNA hel 99.9 4.3E-25 9.4E-30 195.2 18.1 164 58-222 8-301 (423)
25 PRK10590 ATP-dependent RNA hel 99.9 2.8E-25 6.1E-30 198.0 16.6 164 58-222 1-291 (456)
26 PRK04537 ATP-dependent RNA hel 99.9 4.5E-25 9.8E-30 201.1 17.8 165 57-222 8-303 (572)
27 KOG0337|consensus 99.9 3.5E-25 7.6E-30 187.7 11.1 165 58-222 21-307 (529)
28 PRK11192 ATP-dependent RNA hel 99.9 3.8E-23 8.2E-28 183.3 18.1 164 58-222 1-291 (434)
29 KOG4284|consensus 99.9 8.4E-24 1.8E-28 187.2 9.6 166 54-220 21-316 (980)
30 PRK01297 ATP-dependent RNA hel 99.9 6.1E-22 1.3E-26 177.5 18.2 165 57-222 86-381 (475)
31 KOG0347|consensus 99.9 2.8E-24 6.1E-29 187.3 2.9 166 55-222 178-509 (731)
32 PTZ00424 helicase 45; Provisio 99.9 4.1E-21 8.8E-26 168.4 17.6 165 57-222 27-313 (401)
33 KOG0344|consensus 99.9 2.8E-22 6.1E-27 176.1 9.8 187 35-222 109-434 (593)
34 KOG0348|consensus 99.9 1.6E-21 3.6E-26 169.7 9.2 165 58-222 136-493 (708)
35 KOG0329|consensus 99.7 8.2E-19 1.8E-23 141.0 4.7 164 48-212 32-327 (387)
36 TIGR03817 DECH_helic helicase/ 99.7 3.7E-17 8.1E-22 153.1 15.1 159 58-222 12-325 (742)
37 TIGR02621 cas3_GSU0051 CRISPR- 99.7 6.9E-17 1.5E-21 150.5 15.6 114 100-216 187-310 (844)
38 TIGR00614 recQ_fam ATP-depende 99.6 8.8E-14 1.9E-18 124.7 15.6 107 112-222 161-272 (470)
39 PLN03137 ATP-dependent DNA hel 99.6 1.1E-13 2.4E-18 131.8 16.2 106 112-222 615-726 (1195)
40 PRK09401 reverse gyrase; Revie 99.6 6E-14 1.3E-18 136.5 14.4 91 113-210 268-365 (1176)
41 PRK11057 ATP-dependent DNA hel 99.6 1.7E-13 3.6E-18 126.4 16.6 105 112-222 173-282 (607)
42 TIGR01389 recQ ATP-dependent D 99.5 1.5E-13 3.3E-18 126.4 15.4 113 103-222 153-270 (591)
43 PRK00254 ski2-like helicase; P 99.5 9.8E-14 2.1E-18 130.3 11.9 42 58-99 1-43 (720)
44 COG1202 Superfamily II helicas 99.5 2.1E-13 4.5E-18 120.6 12.6 155 58-218 194-482 (830)
45 PRK02362 ski2-like helicase; P 99.5 3.5E-13 7.6E-18 126.9 13.0 42 58-99 1-43 (737)
46 PRK10689 transcription-repair 99.5 1.1E-12 2.4E-17 127.5 14.8 112 105-222 740-857 (1147)
47 PRK14701 reverse gyrase; Provi 99.4 2E-12 4.4E-17 128.7 15.1 102 111-222 266-374 (1638)
48 TIGR00580 mfd transcription-re 99.4 5.8E-12 1.3E-16 120.2 15.4 115 103-222 589-708 (926)
49 KOG0349|consensus 99.4 4.2E-13 9E-18 115.3 6.8 123 100-222 381-554 (725)
50 TIGR01054 rgy reverse gyrase. 99.4 5.3E-12 1.1E-16 123.1 14.5 96 110-212 261-365 (1171)
51 COG1201 Lhr Lhr-like helicases 99.4 1E-11 2.2E-16 115.8 14.4 111 103-218 174-296 (814)
52 PRK01172 ski2-like helicase; P 99.3 8.3E-12 1.8E-16 116.6 11.9 41 58-99 1-41 (674)
53 PRK13767 ATP-dependent helicas 99.3 7.8E-12 1.7E-16 119.5 11.8 44 179-222 284-336 (876)
54 PHA02653 RNA helicase NPH-II; 99.1 4.4E-10 9.6E-15 104.2 12.4 110 100-213 307-434 (675)
55 COG0514 RecQ Superfamily II DN 99.1 4E-10 8.7E-15 101.9 11.5 116 100-221 154-275 (590)
56 TIGR01587 cas3_core CRISPR-ass 99.1 4.8E-10 1E-14 97.1 9.8 116 102-218 143-266 (358)
57 PRK11664 ATP-dependent RNA hel 99.0 2.3E-09 5E-14 101.6 12.3 113 102-222 138-261 (812)
58 TIGR01970 DEAH_box_HrpB ATP-de 99.0 2.9E-09 6.3E-14 100.9 12.6 112 103-222 136-258 (819)
59 cd00268 DEADc DEAD-box helicas 99.0 5.5E-09 1.2E-13 83.1 10.2 82 60-141 1-202 (203)
60 TIGR03158 cas3_cyano CRISPR-as 98.9 3.3E-08 7.2E-13 85.8 12.7 114 105-219 173-317 (357)
61 PHA02558 uvsW UvsW helicase; P 98.9 1.2E-08 2.5E-13 92.4 10.2 43 179-221 344-389 (501)
62 PRK10917 ATP-dependent DNA hel 98.8 9.4E-08 2E-12 89.5 15.0 107 111-222 407-527 (681)
63 KOG0350|consensus 98.8 1.1E-08 2.4E-13 89.6 7.3 111 111-222 358-479 (620)
64 KOG0351|consensus 98.7 2.3E-07 5E-12 88.6 13.4 104 114-220 421-529 (941)
65 PRK09751 putative ATP-dependen 98.7 1.4E-07 3.1E-12 93.6 12.0 119 100-222 146-323 (1490)
66 TIGR00643 recG ATP-dependent D 98.7 3.5E-07 7.7E-12 85.0 14.1 103 113-222 386-504 (630)
67 PRK12898 secA preprotein trans 98.7 4.2E-08 9.1E-13 90.3 7.2 99 115-215 410-512 (656)
68 PRK11131 ATP-dependent RNA hel 98.6 2.6E-07 5.7E-12 90.4 11.9 111 103-220 209-333 (1294)
69 KOG0353|consensus 98.3 6.6E-06 1.4E-10 70.5 11.1 104 112-218 249-359 (695)
70 TIGR01967 DEAH_box_HrpA ATP-de 98.3 6.4E-06 1.4E-10 81.1 12.3 112 102-220 201-326 (1283)
71 COG1205 Distinct helicase fami 98.3 1.8E-05 3.9E-10 75.7 14.1 120 100-221 219-359 (851)
72 PRK09200 preprotein translocas 98.0 3.5E-05 7.5E-10 72.8 9.2 102 115-219 365-471 (790)
73 PRK04914 ATP-dependent helicas 98.0 1E-05 2.2E-10 78.0 5.4 59 163-222 478-540 (956)
74 PRK09694 helicase Cas3; Provis 98.0 9.9E-05 2.1E-09 70.8 11.8 48 169-216 549-603 (878)
75 TIGR03714 secA2 accessory Sec 97.9 3.5E-05 7.5E-10 72.4 8.5 103 115-219 361-467 (762)
76 cd00079 HELICc Helicase superf 97.8 8E-05 1.7E-09 54.3 6.9 69 153-222 2-74 (131)
77 PRK13104 secA preprotein trans 97.7 0.00011 2.4E-09 69.9 8.3 105 115-221 381-489 (896)
78 TIGR00963 secA preprotein tran 97.6 0.00017 3.7E-09 67.5 7.6 102 115-221 342-448 (745)
79 PRK12904 preprotein translocas 97.6 0.00017 3.6E-09 68.4 7.6 102 115-221 367-473 (830)
80 PRK12906 secA preprotein trans 97.5 0.00028 6E-09 66.7 7.2 101 115-217 377-481 (796)
81 KOG0352|consensus 97.4 0.00021 4.6E-09 62.3 5.3 103 113-217 176-296 (641)
82 PRK13107 preprotein translocas 97.4 0.00058 1.2E-08 65.1 7.8 104 115-221 386-494 (908)
83 PRK12900 secA preprotein trans 97.3 0.00064 1.4E-08 65.2 7.0 102 115-220 535-640 (1025)
84 PRK05298 excinuclease ABC subu 97.3 0.00035 7.5E-09 65.5 5.1 60 163-222 429-492 (652)
85 TIGR00631 uvrb excinuclease AB 97.3 0.00039 8.6E-09 65.0 5.2 60 163-222 425-488 (655)
86 COG1203 CRISPR-associated heli 97.1 0.0017 3.6E-08 61.7 8.0 107 113-220 370-484 (733)
87 PRK13766 Hef nuclease; Provisi 96.8 0.0023 4.9E-08 61.2 5.9 60 163-222 346-419 (773)
88 TIGR00595 priA primosomal prot 96.6 0.018 3.9E-07 52.5 9.7 31 192-222 273-308 (505)
89 PF06862 DUF1253: Protein of u 96.5 0.034 7.4E-07 49.5 10.9 105 114-218 216-342 (442)
90 COG1204 Superfamily II helicas 96.5 0.038 8.2E-07 52.8 11.7 37 63-99 14-51 (766)
91 KOG0951|consensus 96.4 0.039 8.4E-07 54.4 11.1 104 113-218 474-625 (1674)
92 PF00270 DEAD: DEAD/DEAH box h 96.0 0.013 2.7E-07 44.7 4.8 30 101-130 138-169 (169)
93 PRK05580 primosome assembly pr 95.7 0.1 2.2E-06 49.4 10.4 31 192-222 441-476 (679)
94 COG1643 HrpA HrpA-like helicas 95.7 0.23 5E-06 47.9 12.5 123 91-219 158-306 (845)
95 PLN03142 Probable chromatin-re 95.4 0.021 4.5E-07 56.0 4.7 62 161-222 468-533 (1033)
96 KOG0950|consensus 95.1 0.1 2.2E-06 50.1 8.1 36 64-99 207-244 (1008)
97 TIGR00603 rad25 DNA repair hel 94.7 0.033 7.1E-07 52.7 3.8 55 163-222 479-537 (732)
98 COG0556 UvrB Helicase subunit 94.4 0.14 3E-06 46.5 6.9 102 113-221 386-491 (663)
99 smart00487 DEXDc DEAD-like hel 94.1 0.28 6.1E-06 37.5 7.5 46 100-145 147-192 (201)
100 KOG0952|consensus 94.1 0.41 8.8E-06 46.7 9.6 96 100-197 255-370 (1230)
101 PF00271 Helicase_C: Helicase 94.1 0.019 4.2E-07 38.0 0.6 29 194-222 1-29 (78)
102 KOG0390|consensus 93.1 0.2 4.4E-06 47.5 5.7 58 163-222 577-641 (776)
103 COG1111 MPH1 ERCC4-like helica 93.0 0.18 4E-06 45.3 5.0 60 163-222 347-421 (542)
104 smart00490 HELICc helicase sup 92.9 0.071 1.5E-06 34.9 1.9 30 193-222 3-33 (82)
105 KOG0922|consensus 92.1 2.5 5.4E-05 39.4 11.2 113 100-219 183-309 (674)
106 COG1110 Reverse gyrase [DNA re 92.1 0.27 5.9E-06 47.8 5.3 90 112-209 275-371 (1187)
107 cd01524 RHOD_Pyr_redox Member 91.4 0.57 1.2E-05 31.8 5.1 35 177-211 49-86 (90)
108 PRK12903 secA preprotein trans 91.2 0.82 1.8E-05 44.1 7.3 98 115-217 363-465 (925)
109 KOG1002|consensus 90.6 0.2 4.2E-06 45.2 2.5 60 163-222 619-684 (791)
110 COG1197 Mfd Transcription-repa 90.4 2.3 5E-05 42.2 9.8 130 83-222 684-851 (1139)
111 COG1061 SSL2 DNA or RNA helica 89.8 0.49 1.1E-05 42.4 4.5 43 179-222 283-328 (442)
112 PRK12326 preprotein translocas 89.8 1.7 3.7E-05 41.3 8.0 93 115-209 364-460 (764)
113 KOG4150|consensus 89.5 8.1 0.00018 35.9 11.8 152 64-218 371-575 (1034)
114 PRK12899 secA preprotein trans 87.9 0.3 6.5E-06 47.4 1.8 71 27-99 32-111 (970)
115 COG4098 comFA Superfamily II D 86.5 4.9 0.00011 34.9 8.1 96 112-209 232-340 (441)
116 PRK12902 secA preprotein trans 84.7 3.8 8.3E-05 39.9 7.4 101 115-217 376-480 (939)
117 cd01523 RHOD_Lact_B Member of 84.3 2 4.4E-05 29.6 4.2 35 178-212 60-97 (100)
118 TIGR01407 dinG_rel DnaQ family 84.2 5.7 0.00012 38.8 8.6 41 178-221 673-720 (850)
119 KOG0948|consensus 83.7 4.3 9.2E-05 38.8 7.0 43 111-156 264-309 (1041)
120 KOG0354|consensus 83.2 1.8 3.9E-05 41.1 4.5 60 163-222 394-470 (746)
121 CHL00122 secA preprotein trans 83.2 6 0.00013 38.4 8.0 99 115-216 361-464 (870)
122 KOG0947|consensus 82.6 2.5 5.5E-05 41.2 5.2 22 77-99 295-316 (1248)
123 COG4581 Superfamily II RNA hel 82.3 6.6 0.00014 38.9 8.0 27 72-99 112-138 (1041)
124 cd01520 RHOD_YbbB Member of th 79.8 5.7 0.00012 28.9 5.4 34 178-211 85-122 (128)
125 PF11019 DUF2608: Protein of u 79.8 7.2 0.00016 32.2 6.5 112 98-209 81-211 (252)
126 COG1200 RecG RecG-like helicas 78.8 27 0.00059 33.0 10.4 103 113-222 411-529 (677)
127 PRK13103 secA preprotein trans 78.3 6.1 0.00013 38.6 6.3 93 115-209 386-482 (913)
128 cd01529 4RHOD_Repeats Member o 76.1 5 0.00011 27.4 4.0 34 178-211 55-92 (96)
129 KOG0920|consensus 75.9 22 0.00047 35.0 9.2 111 101-215 308-459 (924)
130 PRK12899 secA preprotein trans 75.4 11 0.00023 37.2 7.0 97 115-216 505-606 (970)
131 KOG0385|consensus 74.4 10 0.00022 36.4 6.5 89 131-222 441-533 (971)
132 smart00450 RHOD Rhodanese Homo 74.2 5.5 0.00012 26.6 3.8 35 178-212 55-93 (100)
133 cd01518 RHOD_YceA Member of th 74.1 4.3 9.4E-05 28.0 3.3 34 178-211 60-97 (101)
134 cd01526 RHOD_ThiF Member of th 73.5 3.6 7.7E-05 29.7 2.8 35 178-212 71-110 (122)
135 cd01533 4RHOD_Repeat_2 Member 72.7 5.8 0.00013 27.8 3.7 34 179-212 66-104 (109)
136 cd01534 4RHOD_Repeat_3 Member 72.6 5.7 0.00012 27.0 3.5 33 179-211 56-91 (95)
137 COG1198 PriA Primosomal protei 72.5 5 0.00011 38.3 4.1 61 159-219 224-289 (730)
138 cd01444 GlpE_ST GlpE sulfurtra 72.3 10 0.00022 25.5 4.8 34 178-211 55-92 (96)
139 cd01521 RHOD_PspE2 Member of t 71.8 7.6 0.00017 27.3 4.1 35 178-212 63-102 (110)
140 cd01527 RHOD_YgaP Member of th 71.6 6.1 0.00013 27.0 3.5 33 179-211 54-90 (99)
141 COG0553 HepA Superfamily II DN 71.0 8.8 0.00019 37.0 5.6 59 164-222 692-757 (866)
142 PRK11448 hsdR type I restricti 69.0 9.7 0.00021 38.4 5.4 42 179-222 698-751 (1123)
143 cd01535 4RHOD_Repeat_4 Member 67.9 16 0.00036 27.3 5.4 41 171-211 41-85 (145)
144 cd01528 RHOD_2 Member of the R 67.4 17 0.00038 24.9 5.1 34 179-212 58-95 (101)
145 cd01532 4RHOD_Repeat_1 Member 67.2 11 0.00023 25.6 3.9 33 179-211 50-88 (92)
146 PRK12901 secA preprotein trans 66.9 12 0.00026 37.2 5.3 93 116-210 566-662 (1112)
147 KOG0387|consensus 66.2 14 0.0003 35.6 5.5 206 3-222 331-593 (923)
148 KOG0923|consensus 64.9 73 0.0016 30.4 9.7 113 100-219 398-525 (902)
149 cd01519 RHOD_HSP67B2 Member of 63.7 9.7 0.00021 26.2 3.3 33 179-211 66-102 (106)
150 cd01449 TST_Repeat_2 Thiosulfa 61.8 22 0.00047 25.0 4.9 34 178-211 77-114 (118)
151 COG1198 PriA Primosomal protei 61.7 33 0.00072 32.9 7.2 88 100-190 337-431 (730)
152 cd01525 RHOD_Kc Member of the 61.5 11 0.00024 25.9 3.3 33 179-211 65-101 (105)
153 cd01447 Polysulfide_ST Polysul 60.7 8.9 0.00019 26.2 2.6 34 178-211 60-97 (103)
154 PRK14873 primosome assembly pr 60.5 20 0.00043 34.1 5.5 59 162-220 170-234 (665)
155 PRK08074 bifunctional ATP-depe 57.0 31 0.00067 34.2 6.4 22 178-199 751-775 (928)
156 PRK05580 primosome assembly pr 56.4 25 0.00055 33.4 5.6 57 163-219 173-234 (679)
157 PRK10917 ATP-dependent DNA hel 56.3 27 0.00059 33.2 5.8 58 163-220 293-358 (681)
158 TIGR03865 PQQ_CXXCW PQQ-depend 56.2 18 0.00039 27.6 3.8 34 178-211 115-153 (162)
159 PRK00162 glpE thiosulfate sulf 55.9 32 0.00068 23.9 4.8 41 172-212 51-95 (108)
160 cd01448 TST_Repeat_1 Thiosulfa 55.9 17 0.00037 25.8 3.5 35 178-212 78-117 (122)
161 TIGR00595 priA primosomal prot 55.4 32 0.00069 31.5 5.9 57 163-219 8-69 (505)
162 cd00158 RHOD Rhodanese Homolog 55.1 25 0.00054 22.8 4.1 34 178-211 49-86 (89)
163 COG1199 DinG Rad3-related DNA 54.8 49 0.0011 31.2 7.2 32 179-210 479-514 (654)
164 COG0135 TrpF Phosphoribosylant 54.8 43 0.00092 26.9 5.8 35 180-214 54-89 (208)
165 PF00581 Rhodanese: Rhodanese- 54.7 27 0.00058 23.9 4.3 33 179-211 67-108 (113)
166 PLN02160 thiosulfate sulfurtra 52.1 21 0.00045 26.4 3.5 35 178-212 80-118 (136)
167 PRK05320 rhodanese superfamily 51.4 31 0.00067 28.6 4.7 35 178-212 174-212 (257)
168 cd00268 DEADc DEAD-box helicas 51.3 49 0.0011 25.6 5.7 41 179-219 69-116 (203)
169 TIGR03191 benz_CoA_bzdO benzoy 50.7 47 0.001 29.8 6.1 50 163-213 347-404 (430)
170 TIGR00604 rad3 DNA repair heli 49.6 97 0.0021 29.6 8.3 29 100-132 431-459 (705)
171 PRK13958 N-(5'-phosphoribosyl) 49.6 32 0.00069 27.5 4.4 35 180-214 54-89 (207)
172 COG0607 PspE Rhodanese-related 46.0 21 0.00046 24.5 2.6 33 179-211 61-97 (110)
173 cd01522 RHOD_1 Member of the R 44.8 33 0.00071 24.4 3.5 35 178-212 63-101 (117)
174 KOG0391|consensus 44.6 34 0.00073 34.9 4.3 56 164-221 1263-1321(1958)
175 PF13080 DUF3926: Protein of u 44.2 14 0.0003 21.5 1.1 10 80-89 7-16 (44)
176 KOG0347|consensus 44.0 22 0.00047 33.0 2.8 40 181-220 265-311 (731)
177 PRK10287 thiosulfate:cyanide s 43.6 46 0.001 23.4 4.0 32 180-211 61-95 (104)
178 PRK01222 N-(5'-phosphoribosyl) 43.4 84 0.0018 25.1 6.0 34 180-213 56-90 (210)
179 TIGR00643 recG ATP-dependent D 43.4 50 0.0011 31.1 5.3 57 163-219 267-331 (630)
180 PRK01415 hypothetical protein; 43.0 47 0.001 27.4 4.5 35 177-211 169-207 (247)
181 cd01530 Cdc25 Cdc25 phosphatas 42.5 33 0.00071 24.7 3.2 34 178-211 67-117 (121)
182 TIGR02981 phageshock_pspE phag 40.8 52 0.0011 22.9 3.9 33 179-211 58-93 (101)
183 TIGR00596 rad1 DNA repair prot 40.5 39 0.00084 33.0 4.2 38 161-198 267-317 (814)
184 KOG0384|consensus 40.1 22 0.00048 35.9 2.4 43 180-222 700-745 (1373)
185 PLN02363 phosphoribosylanthran 37.9 60 0.0013 26.9 4.4 34 180-213 101-135 (256)
186 cd06578 HemD Uroporphyrinogen- 37.8 2E+02 0.0043 22.5 8.3 41 166-206 108-151 (239)
187 KOG0392|consensus 37.7 72 0.0016 32.7 5.4 60 163-222 1309-1389(1549)
188 KOG0925|consensus 37.3 3.4E+02 0.0075 25.2 9.9 103 100-210 179-296 (699)
189 PRK06646 DNA polymerase III su 37.1 71 0.0015 24.3 4.4 44 156-199 5-52 (154)
190 cd01445 TST_Repeats Thiosulfat 36.9 67 0.0015 23.7 4.2 34 178-211 94-134 (138)
191 PF04110 APG12: Ubiquitin-like 36.5 47 0.001 22.8 3.0 40 150-189 12-54 (87)
192 cd00405 PRAI Phosphoribosylant 36.0 1.8E+02 0.0039 22.8 6.8 41 171-211 41-84 (203)
193 PRK00142 putative rhodanese-re 36.0 44 0.00095 28.6 3.4 35 178-212 170-208 (314)
194 PTZ00240 60S ribosomal protein 35.3 1.5E+02 0.0033 25.5 6.5 108 103-211 12-124 (323)
195 PF00697 PRAI: N-(5'phosphorib 35.1 80 0.0017 24.8 4.6 40 173-212 43-83 (197)
196 cd03418 GRX_GRXb_1_3_like Glut 34.4 72 0.0016 20.1 3.6 30 182-211 2-35 (75)
197 TIGR03167 tRNA_sel_U_synt tRNA 34.2 1.1E+02 0.0023 26.3 5.5 32 180-211 75-110 (311)
198 PRK11493 sseA 3-mercaptopyruva 33.5 35 0.00076 28.4 2.4 34 179-212 231-268 (281)
199 PRK05728 DNA polymerase III su 33.3 83 0.0018 23.5 4.2 41 159-199 8-52 (142)
200 TIGR01389 recQ ATP-dependent D 33.0 95 0.0021 28.9 5.4 90 71-219 3-96 (591)
201 TIGR03190 benz_CoA_bzdN benzoy 33.0 1.1E+02 0.0023 26.9 5.5 52 163-216 299-358 (377)
202 KOG1000|consensus 32.9 1.3E+02 0.0028 27.8 5.9 41 179-219 492-535 (689)
203 cd00472 Ribosomal_L24e_L24 Rib 32.8 32 0.00069 21.3 1.5 15 178-192 24-38 (54)
204 PF14053 DUF4248: Domain of un 32.0 78 0.0017 20.6 3.3 30 64-93 33-66 (69)
205 PRK12898 secA preprotein trans 31.9 1.2E+02 0.0027 28.8 5.9 42 178-219 143-191 (656)
206 cd01531 Acr2p Eukaryotic arsen 31.9 1.8E+02 0.0038 20.2 6.7 33 179-211 62-107 (113)
207 PRK11784 tRNA 2-selenouridine 31.4 1.2E+02 0.0026 26.4 5.4 35 178-212 87-125 (345)
208 PRK05928 hemD uroporphyrinogen 30.8 73 0.0016 25.4 3.8 38 168-205 113-153 (249)
209 KOG2340|consensus 30.7 15 0.00033 33.8 -0.2 95 114-208 470-584 (698)
210 PF06399 GFRP: GTP cyclohydrol 29.7 1.6E+02 0.0034 19.9 4.5 43 166-208 24-71 (83)
211 PRK05597 molybdopterin biosynt 29.7 74 0.0016 27.7 3.9 33 179-211 314-350 (355)
212 PRK07246 bifunctional ATP-depe 29.6 2.2E+02 0.0047 28.0 7.3 30 178-208 646-678 (820)
213 PRK14891 50S ribosomal protein 29.4 34 0.00074 25.2 1.4 14 178-191 25-38 (131)
214 TIGR02562 cas3_yersinia CRISPR 29.0 64 0.0014 32.4 3.6 42 93-134 592-646 (1110)
215 TIGR00614 recQ_fam ATP-depende 28.6 1E+02 0.0022 27.8 4.7 85 76-219 7-94 (470)
216 PRK07411 hypothetical protein; 28.4 94 0.002 27.4 4.3 37 177-213 340-379 (390)
217 PF04364 DNA_pol3_chi: DNA pol 27.6 95 0.0021 23.0 3.6 45 157-201 6-54 (137)
218 PLN02723 3-mercaptopyruvate su 27.6 1.2E+02 0.0026 25.9 4.7 34 178-211 102-140 (320)
219 TIGR00963 secA preprotein tran 27.5 1.4E+02 0.0029 29.0 5.4 42 179-220 97-145 (745)
220 KOG0389|consensus 26.9 1.6E+02 0.0034 28.8 5.6 60 163-222 760-823 (941)
221 PF04413 Glycos_transf_N: 3-De 26.8 2.4E+02 0.0053 21.9 6.0 42 171-214 89-132 (186)
222 PLN02723 3-mercaptopyruvate su 26.7 80 0.0017 27.0 3.5 34 178-211 268-305 (320)
223 PRK11634 ATP-dependent RNA hel 26.6 1.4E+02 0.003 28.2 5.3 41 179-219 74-122 (629)
224 KOG0953|consensus 26.4 1.2E+02 0.0026 28.4 4.6 45 178-222 356-403 (700)
225 PRK11747 dinG ATP-dependent DN 26.2 3.3E+02 0.0072 26.1 7.8 30 179-209 534-567 (697)
226 PRK09427 bifunctional indole-3 26.0 3.2E+02 0.0069 24.8 7.3 38 177-214 305-343 (454)
227 cd03028 GRX_PICOT_like Glutare 25.4 1E+02 0.0022 20.7 3.2 29 178-206 6-43 (90)
228 PRK11493 sseA 3-mercaptopyruva 25.1 1.2E+02 0.0025 25.3 4.2 34 178-211 86-124 (281)
229 TIGR00365 monothiol glutaredox 24.5 1.5E+02 0.0033 20.3 4.1 33 174-206 6-47 (97)
230 COG0514 RecQ Superfamily II DN 24.4 1.1E+02 0.0023 28.8 4.0 42 179-220 57-101 (590)
231 COG0560 SerB Phosphoserine pho 24.4 3.7E+02 0.0079 21.4 10.4 88 112-203 92-183 (212)
232 COG2519 GCD14 tRNA(1-methylade 23.8 4.3E+02 0.0093 22.0 8.3 65 134-201 143-213 (256)
233 PRK11776 ATP-dependent RNA hel 23.4 1.8E+02 0.0038 26.1 5.2 40 180-219 73-120 (460)
234 PF09416 UPF1_Zn_bind: RNA hel 23.4 66 0.0014 24.5 2.1 28 184-211 23-55 (152)
235 PF09711 Cas_Csn2: CRISPR-asso 22.9 3E+02 0.0066 21.7 5.8 45 165-210 117-169 (188)
236 PRK05600 thiamine biosynthesis 22.7 1.3E+02 0.0028 26.4 4.1 32 180-211 333-369 (370)
237 PRK13103 secA preprotein trans 22.1 2.2E+02 0.0047 28.3 5.7 44 177-220 121-171 (913)
238 KOG0339|consensus 22.0 1.2E+02 0.0026 28.1 3.7 42 179-220 295-344 (731)
239 TIGR02679 conserved hypothetic 21.9 3.3E+02 0.0073 24.1 6.5 54 156-213 252-310 (385)
240 PF09288 UBA_3: Fungal ubiquit 21.9 35 0.00075 21.2 0.3 22 59-80 15-37 (55)
241 PF13245 AAA_19: Part of AAA d 21.9 1.3E+02 0.0028 19.7 3.1 47 161-208 19-74 (76)
242 COG0513 SrmB Superfamily II DN 21.7 1.9E+02 0.004 26.6 5.1 39 182-220 102-148 (513)
243 PRK09200 preprotein translocas 21.7 2.3E+02 0.0051 27.7 5.8 42 178-219 118-167 (790)
244 KOG3439|consensus 21.4 3.2E+02 0.007 19.7 5.4 50 139-189 31-83 (116)
245 TIGR01407 dinG_rel DnaQ family 21.2 2.6E+02 0.0057 27.4 6.2 59 65-124 231-303 (850)
246 PF02602 HEM4: Uroporphyrinoge 21.0 1.7E+02 0.0037 23.1 4.3 41 166-206 104-146 (231)
247 PF11823 DUF3343: Protein of u 21.0 1.5E+02 0.0033 19.0 3.3 21 183-203 6-28 (73)
248 PRK08762 molybdopterin biosynt 20.8 1.3E+02 0.0029 26.2 3.8 34 179-212 57-94 (376)
249 COG1412 Uncharacterized protei 20.0 1.2E+02 0.0026 22.7 2.8 39 166-209 87-126 (136)
No 1
>KOG0339|consensus
Probab=100.00 E-value=1.2e-43 Score=304.97 Aligned_cols=221 Identities=58% Similarity=0.899 Sum_probs=214.5
Q ss_pred CCCCCCCCCCCCcccccccccCCCChhhhcCCHHHHHHHHHHcCCEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCC
Q psy17636 2 IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSP 81 (222)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~p 81 (222)
|+++.+|||++|+|+||+|+||.++++++.++..+...++..+++.|.|.++|.|+.+|+++|+++.|+.++.+.-|++|
T Consensus 167 idpl~~idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kp 246 (731)
T KOG0339|consen 167 IDPLPPIDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKP 246 (731)
T ss_pred CCCCCCcchhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhHHHHHhCCCCCC--------------------------------------------------------------
Q psy17636 82 TPIQAQAVPAALSGRDII-------------------------------------------------------------- 99 (222)
Q Consensus 82 TpIQ~~~ip~il~g~dvi-------------------------------------------------------------- 99 (222)
||||.+++|..+.|+||+
T Consensus 247 tpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~ 326 (731)
T KOG0339|consen 247 TPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLR 326 (731)
T ss_pred CcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccce
Confidence 999999999999999999
Q ss_pred -------------------------------------------------------------HHHHHHHHhhCCCCCeEEE
Q psy17636 100 -------------------------------------------------------------EPQVRSICDHVRPNRQTLL 118 (222)
Q Consensus 100 -------------------------------------------------------------~~~l~~Il~~~~~~~Q~~l 118 (222)
++++++|..+++++||++|
T Consensus 327 ~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtll 406 (731)
T KOG0339|consen 327 VVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLL 406 (731)
T ss_pred EEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEE
Confidence 9999999999999999999
Q ss_pred EccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-H
Q psy17636 119 FSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-V 194 (222)
Q Consensus 119 fSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~ 194 (222)
||||++..|+.+|+.+|.+|+.+..+..+..+..|.|.+.+|++ ..|+.+|++.|.+..+.+++||||..+.+ .+ .
T Consensus 407 FsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a 486 (731)
T KOG0339|consen 407 FSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAA 486 (731)
T ss_pred eeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHH
Confidence 99999999999999999999999999999999999999999988 78999999999998888999999988866 89 9
Q ss_pred HhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 195 NLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 195 ~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.|+-+|+++..+||+|.|.+|-+.|+.|
T Consensus 487 ~Lklk~~~v~llhgdkdqa~rn~~ls~f 514 (731)
T KOG0339|consen 487 NLKLKGFNVSLLHGDKDQAERNEVLSKF 514 (731)
T ss_pred HhccccceeeeecCchhhHHHHHHHHHH
Confidence 9999999999999999999999999876
No 2
>KOG0336|consensus
Probab=100.00 E-value=5.3e-39 Score=270.75 Aligned_cols=210 Identities=29% Similarity=0.453 Sum_probs=190.8
Q ss_pred CcccccccccCCCChhhhcCCHHHHHHHHHHc-CCEEec------CCCCCCCCCcCC-CCCCHHHHHHHHHCCCCCCCHH
Q psy17636 13 IVYEEVEKNFYQPHEDIARLTPQEAQELRAKS-GITVSG------ADPPYPVSSFGH-FGFDEVLMKALRKCEYTSPTPI 84 (222)
Q Consensus 13 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~-~i~v~g------~~~p~~~~~f~~-l~l~~~l~~~l~~~g~~~pTpI 84 (222)
.++||+.||||.++.+.+.|++++++.||+++ +|++.. ..+|+|+.+|++ ++..+++++.+++.||.+||||
T Consensus 167 ~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPI 246 (629)
T KOG0336|consen 167 AKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPI 246 (629)
T ss_pred ccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcc
Confidence 47999999999999999999999999999996 666653 357999999998 6899999999999999999999
Q ss_pred HHhHHHHHhCCCCCC-----------------------------------------------------------------
Q psy17636 85 QAQAVPAALSGRDII----------------------------------------------------------------- 99 (222)
Q Consensus 85 Q~~~ip~il~g~dvi----------------------------------------------------------------- 99 (222)
|.+|||++|+|.|++
T Consensus 247 qSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc 326 (629)
T KOG0336|consen 247 QSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVC 326 (629)
T ss_pred hhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEE
Confidence 999999999999999
Q ss_pred ----------------------------------------------------------HHHHHHHHhhCCCCCeEEEEcc
Q psy17636 100 ----------------------------------------------------------EPQVRSICDHVRPNRQTLLFSA 121 (222)
Q Consensus 100 ----------------------------------------------------------~~~l~~Il~~~~~~~Q~~lfSA 121 (222)
+++|++|+-.++++|||+|.||
T Consensus 327 ~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSA 406 (629)
T KOG0336|consen 327 VYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSA 406 (629)
T ss_pred EecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecc
Confidence 8999999999999999999999
Q ss_pred ccchHHHHHHHHhcCCCcEEEeCCCC-CCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccH--HHH-HHhH
Q psy17636 122 TFKKRIEKLARDVLTDPIKIVQGDIG-EANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKC--FEL-VNLI 197 (222)
Q Consensus 122 T~~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~--~~l-~~L~ 197 (222)
|||+.|+.+|..|+++|+.+.++..+ .+...|+|.++...+.+|+.....++....+..++||||.++. +.| ..|.
T Consensus 407 TWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~ 486 (629)
T KOG0336|consen 407 TWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFC 486 (629)
T ss_pred cCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhh
Confidence 99999999999999999999999887 4567899999777778999877666666666689999999884 489 9999
Q ss_pred HCCceEEEecCCCCCChHHHhhcCC
Q psy17636 198 AKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 198 ~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
-.|+.+.+|||+-+|.+|+.+|.+|
T Consensus 487 l~gi~~q~lHG~r~Q~DrE~al~~~ 511 (629)
T KOG0336|consen 487 LKGISSQSLHGNREQSDREMALEDF 511 (629)
T ss_pred hcccchhhccCChhhhhHHHHHHhh
Confidence 9999999999999999999999876
No 3
>KOG0341|consensus
Probab=100.00 E-value=1.8e-39 Score=272.14 Aligned_cols=209 Identities=33% Similarity=0.497 Sum_probs=199.2
Q ss_pred CCcccccccccCCCChhhhcCCHHHHHHHHHHcCCEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHH
Q psy17636 12 TIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA 91 (222)
Q Consensus 12 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~ 91 (222)
.|+|..-.+..|.++.-+..|++++.+..|++++|.|.|.++|+|+.+|.+|.+|..+++.|++.|+.+|||||.+.+|.
T Consensus 124 Gi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPv 203 (610)
T KOG0341|consen 124 GITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPV 203 (610)
T ss_pred CCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcce
Confidence 37888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCC------------------------------------------------------------------------
Q psy17636 92 ALSGRDII------------------------------------------------------------------------ 99 (222)
Q Consensus 92 il~g~dvi------------------------------------------------------------------------ 99 (222)
+|+|||+|
T Consensus 204 vLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs 283 (610)
T KOG0341|consen 204 VLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRS 283 (610)
T ss_pred EeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence 99999999
Q ss_pred ------------------------------------------------------------HHHHHHHHhhCCCCCeEEEE
Q psy17636 100 ------------------------------------------------------------EPQVRSICDHVRPNRQTLLF 119 (222)
Q Consensus 100 ------------------------------------------------------------~~~l~~Il~~~~~~~Q~~lf 119 (222)
+++|+.|+.+++..|||+||
T Consensus 284 ~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLF 363 (610)
T KOG0341|consen 284 LLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLF 363 (610)
T ss_pred hhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeee
Confidence 89999999999999999999
Q ss_pred ccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHh
Q psy17636 120 SATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNL 196 (222)
Q Consensus 120 SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L 196 (222)
|||||..++.+|+..+-.|+.|+|+..+.++-++.|.+.+|..+.|..+|++.|.+. ..+++|||..+.+ .+ ++|
T Consensus 364 SATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT--~PpVLIFaEkK~DVD~IhEYL 441 (610)
T KOG0341|consen 364 SATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKT--SPPVLIFAEKKADVDDIHEYL 441 (610)
T ss_pred eccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccC--CCceEEEeccccChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888764 4699999998877 88 999
Q ss_pred HHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 197 IAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 197 ~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.-+|..++++||+.+|++|..+++.|
T Consensus 442 LlKGVEavaIHGGKDQedR~~ai~af 467 (610)
T KOG0341|consen 442 LLKGVEAVAIHGGKDQEDRHYAIEAF 467 (610)
T ss_pred HHccceeEEeecCcchhHHHHHHHHH
Confidence 99999999999999999999988754
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=6.3e-37 Score=277.54 Aligned_cols=220 Identities=35% Similarity=0.549 Sum_probs=202.0
Q ss_pred CCCCCCCCCCCcccccccccCCCChhhhcCCHHHHHHHHHHcCCEE-ecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCC
Q psy17636 3 DPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITV-SGADPPYPVSSFGHFGFDEVLMKALRKCEYTSP 81 (222)
Q Consensus 3 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~i~v-~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~p 81 (222)
+++.++||+..+++||+|+||.++.+++.++.++++.++++++|++ .|.++|+|+.+|+++++++.++++|.++||.+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p 153 (545)
T PTZ00110 74 KRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEP 153 (545)
T ss_pred cccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCC
Confidence 4688999999999999999999999999999999999999999997 699999999999999999999999999999999
Q ss_pred CHHHHhHHHHHhCCCCCC--------------------------------------------------------------
Q psy17636 82 TPIQAQAVPAALSGRDII-------------------------------------------------------------- 99 (222)
Q Consensus 82 TpIQ~~~ip~il~g~dvi-------------------------------------------------------------- 99 (222)
||||.+|||.+++|+|+|
T Consensus 154 t~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~ 233 (545)
T PTZ00110 154 TPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIR 233 (545)
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCcc
Confidence 999999999999999999
Q ss_pred -------------------------------------------------------------HHHHHHHHhhCCCCCeEEE
Q psy17636 100 -------------------------------------------------------------EPQVRSICDHVRPNRQTLL 118 (222)
Q Consensus 100 -------------------------------------------------------------~~~l~~Il~~~~~~~Q~~l 118 (222)
.+++..|+..+++++|+++
T Consensus 234 ~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~ 313 (545)
T PTZ00110 234 NTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLM 313 (545)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEE
Confidence 6778899999999999999
Q ss_pred EccccchHHHHHHHHhcC-CCcEEEeCCCC-CCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH
Q psy17636 119 FSATFKKRIEKLARDVLT-DPIKIVQGDIG-EANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL 193 (222)
Q Consensus 119 fSAT~~~~v~~l~~~~l~-~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l 193 (222)
||||+|.+++.+++.++. +|+.+.++... ....+++|.+..++..+|...|..++.... ...++||||+|+.. .+
T Consensus 314 ~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l 393 (545)
T PTZ00110 314 WSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFL 393 (545)
T ss_pred EEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHH
Confidence 999999999999999986 68888887655 456789999999998889988888777654 45799999999976 88
Q ss_pred -HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 194 -VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 194 -~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..|...|+++..+||+|++++|+.+|..|
T Consensus 394 ~~~L~~~g~~~~~ihg~~~~~eR~~il~~F 423 (545)
T PTZ00110 394 TKELRLDGWPALCIHGDKKQEERTWVLNEF 423 (545)
T ss_pred HHHHHHcCCcEEEEECCCcHHHHHHHHHHH
Confidence 99999999999999999999999998765
No 5
>KOG0334|consensus
Probab=100.00 E-value=1.5e-38 Score=292.44 Aligned_cols=219 Identities=39% Similarity=0.574 Sum_probs=208.4
Q ss_pred CCCCCCCCCCcccccccccCCCChhhhcCCHHHHHHHHHHcC-CEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCC
Q psy17636 4 PLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSG-ITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPT 82 (222)
Q Consensus 4 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~-i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pT 82 (222)
.+..++||++.|.||+|+||.+.++++.|+.++++.+|.... |+|.|.+||.|+.+|.+.|++..|+..++++||..||
T Consensus 310 ~~~~~~~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~ 389 (997)
T KOG0334|consen 310 NLIQVDHSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPT 389 (997)
T ss_pred ceeecccccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCc
Confidence 467899999999999999999999999999999999999975 9999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHhCCCCCC---------------------------------------------------------------
Q psy17636 83 PIQAQAVPAALSGRDII--------------------------------------------------------------- 99 (222)
Q Consensus 83 pIQ~~~ip~il~g~dvi--------------------------------------------------------------- 99 (222)
|||.+|||+|++|+|||
T Consensus 390 ~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~ 469 (997)
T KOG0334|consen 390 PIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRV 469 (997)
T ss_pred chhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceE
Confidence 99999999999999999
Q ss_pred ---------------------------------------------------------------HHHHHHHHhhCCCCCeE
Q psy17636 100 ---------------------------------------------------------------EPQVRSICDHVRPNRQT 116 (222)
Q Consensus 100 ---------------------------------------------------------------~~~l~~Il~~~~~~~Q~ 116 (222)
+|++..|++.++++|||
T Consensus 470 v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQt 549 (997)
T KOG0334|consen 470 VCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQT 549 (997)
T ss_pred EEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhh
Confidence 88888999999999999
Q ss_pred EEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcC-CCchHHHHHHHHHhhCCCCeEEEEecccH--HHH
Q psy17636 117 LLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLP-QTQKLTWLTHNLVEFLSTGSLLIFVTKKC--FEL 193 (222)
Q Consensus 117 ~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~-~~~K~~~L~~~l~~~~~~~~~IVF~nt~~--~~l 193 (222)
++||||+|-.++.+|...++.|+.|.++.....++.|.|.+.+|+ ..+|+..|+.+|......+++||||.++. +.+
T Consensus 550 vlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l 629 (997)
T KOG0334|consen 550 VLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADAL 629 (997)
T ss_pred hhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHH
Confidence 999999999999999999999999999988899999999999999 69999999999998888899999997664 488
Q ss_pred -HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 194 -VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 194 -~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..|.+.|+.|.+|||+.+|.+|.+.+++|
T Consensus 630 ~~~L~~ag~~~~slHGgv~q~dR~sti~df 659 (997)
T KOG0334|consen 630 LRDLQKAGYNCDSLHGGVDQHDRSSTIEDF 659 (997)
T ss_pred HHHHHhcCcchhhhcCCCchHHHHhHHHHH
Confidence 99999999999999999999999998876
No 6
>KOG0331|consensus
Probab=100.00 E-value=5.5e-37 Score=269.39 Aligned_cols=216 Identities=40% Similarity=0.571 Sum_probs=193.0
Q ss_pred CCCCCC--CcccccccccCCCChhhhcCCHHHHHHHHHHcCCEEecCC-CCCCCCCcCC---------------------
Q psy17636 7 PIDHST--IVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGAD-PPYPVSSFGH--------------------- 62 (222)
Q Consensus 7 ~~~~~~--~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~-~p~~~~~f~~--------------------- 62 (222)
..+|+. .+++++.+++|.+..........+....+..+.+++.|.+ +|.|+.+|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (519)
T KOG0331|consen 8 KKDLSLRSLDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGES 87 (519)
T ss_pred hhhhhccccccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccC
Confidence 345554 7899999999999999999999999999999999999876 8888766544
Q ss_pred --------CCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-----------------------------------
Q psy17636 63 --------FGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII----------------------------------- 99 (222)
Q Consensus 63 --------l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi----------------------------------- 99 (222)
++|++.+..+|+..||..|||||+++||++++|+|++
T Consensus 88 ~~~~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~ 167 (519)
T KOG0331|consen 88 DSSAAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPI 167 (519)
T ss_pred CcchhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCe
Confidence 5566777788889999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 168 vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 168 VLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDE 247 (519)
T ss_pred EEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEecc
Confidence
Q ss_pred ---------HHHHHHHHhhC-CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCC--CCCCCeeEEEEEcCCCchHH
Q psy17636 100 ---------EPQVRSICDHV-RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIG--EANTDITQVVINLPQTQKLT 167 (222)
Q Consensus 100 ---------~~~l~~Il~~~-~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~--~~~~~i~q~~~~~~~~~K~~ 167 (222)
+++|+.|+..+ ++.+||+|||||||.+|+.+|..|+.+|+.|.++... .++.+|.|.+..|+...|..
T Consensus 248 ADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~ 327 (519)
T KOG0331|consen 248 ADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLR 327 (519)
T ss_pred HHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHH
Confidence 99999999999 6778999999999999999999999999999998764 67889999999999989998
Q ss_pred HHHHHHHhhC--CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 168 WLTHNLVEFL--STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 168 ~L~~~l~~~~--~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.|..+|.... +.+|+||||+|+.. +| ..|+..|+++.+||||++|+||+.+|..|
T Consensus 328 ~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~F 387 (519)
T KOG0331|consen 328 KLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGF 387 (519)
T ss_pred HHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhc
Confidence 8888887765 44699999999965 99 99999999999999999999999999876
No 7
>KOG0333|consensus
Probab=100.00 E-value=4e-36 Score=259.50 Aligned_cols=194 Identities=29% Similarity=0.418 Sum_probs=182.6
Q ss_pred hhhcCCHHHHHHHHHHcCCEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------
Q psy17636 28 DIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------- 99 (222)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------- 99 (222)
.+.+|++.+|+.++..++|.++|..+|.|+.+|++.|+|.++++.+...||..|||||++|||..++.+|+|
T Consensus 215 ~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsG 294 (673)
T KOG0333|consen 215 VLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSG 294 (673)
T ss_pred hHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 295 ktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gce 374 (673)
T KOG0333|consen 295 KTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCE 374 (673)
T ss_pred ccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccce
Confidence
Q ss_pred ---------------------------------------HHHHHHHHhhCCC-------------------------CCe
Q psy17636 100 ---------------------------------------EPQVRSICDHVRP-------------------------NRQ 115 (222)
Q Consensus 100 ---------------------------------------~~~l~~Il~~~~~-------------------------~~Q 115 (222)
++++..|+.++|. -+|
T Consensus 375 iviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrq 454 (673)
T KOG0333|consen 375 IVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQ 454 (673)
T ss_pred eeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeE
Confidence 8999999999862 189
Q ss_pred EEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH
Q psy17636 116 TLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL 193 (222)
Q Consensus 116 ~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l 193 (222)
|+|||||||+.++.+|+.||.+|+++.++..+...+.|+|.++.++..+|...|...|... ...++|||+|++.. .|
T Consensus 455 T~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~l 533 (673)
T KOG0333|consen 455 TVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADAL 533 (673)
T ss_pred EEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999998888765 45799999999965 88
Q ss_pred -HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 194 -VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 194 -~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
+.|.+.|++|..|||+.+|+||+.+|++|
T Consensus 534 Ak~LeK~g~~~~tlHg~k~qeQRe~aL~~f 563 (673)
T KOG0333|consen 534 AKILEKAGYKVTTLHGGKSQEQRENALADF 563 (673)
T ss_pred HHHHhhccceEEEeeCCccHHHHHHHHHHH
Confidence 99999999999999999999999999876
No 8
>KOG0328|consensus
Probab=100.00 E-value=1.2e-34 Score=234.42 Aligned_cols=168 Identities=23% Similarity=0.354 Sum_probs=157.0
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC----------------------------------
Q psy17636 54 PYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII---------------------------------- 99 (222)
Q Consensus 54 p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi---------------------------------- 99 (222)
-.++.+|++|||.+++++++...||++|+.||+.|||+|+.|+|||
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lils 102 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILS 102 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEec
Confidence 4457899999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 103 PTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL 182 (400)
T KOG0328|consen 103 PTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEML 182 (400)
T ss_pred ChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHH
Confidence
Q ss_pred ----HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCC-chHHHHHHHHH
Q psy17636 100 ----EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQT-QKLTWLTHNLV 174 (222)
Q Consensus 100 ----~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~-~K~~~L~~~l~ 174 (222)
.+|+.+|.+++|++.|++++|||+|.++.++...|+.+|+.|-+...+.+.+.|+|+|+.++.+ .|++.|.. |.
T Consensus 183 ~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcd-LY 261 (400)
T KOG0328|consen 183 NKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCD-LY 261 (400)
T ss_pred HhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHH-Hh
Confidence 7899999999999999999999999999999999999999999999999999999999999885 59999955 66
Q ss_pred hhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 175 EFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 175 ~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
....-.+++|||||+.. +| +.++..++.+.++||||+|++|++...+|
T Consensus 262 d~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dF 312 (400)
T KOG0328|consen 262 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDF 312 (400)
T ss_pred hhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHh
Confidence 66666899999999976 99 99999999999999999999999988765
No 9
>KOG0330|consensus
Probab=100.00 E-value=9.9e-34 Score=237.36 Aligned_cols=166 Identities=30% Similarity=0.429 Sum_probs=157.1
Q ss_pred CCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------------
Q psy17636 56 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------ 99 (222)
Q Consensus 56 ~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------ 99 (222)
...+|.+||+++.+++++++.||+.||+||.++||.++.|+|||
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPt 138 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPT 138 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCc
Confidence 35789999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 139 RELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd 218 (476)
T KOG0330|consen 139 RELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLD 218 (476)
T ss_pred HHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhh
Confidence
Q ss_pred ---HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhh
Q psy17636 100 ---EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEF 176 (222)
Q Consensus 100 ---~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~ 176 (222)
.+.+..|++.+|.+||++|||||||+.+.++-...+.+|+.|.+.....+.++++|+|.+++..+|..+|+.+|.+.
T Consensus 219 ~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~ 298 (476)
T KOG0330|consen 219 MDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNEL 298 (476)
T ss_pred hhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhh
Confidence 88999999999999999999999999999999999999999999988899999999999999999999999988776
Q ss_pred CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 177 LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 177 ~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.. .++||||||+.+ ++ -.|+..|+.+..|||+|+|..|.-+|..|
T Consensus 299 ~g-~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~F 346 (476)
T KOG0330|consen 299 AG-NSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKF 346 (476)
T ss_pred cC-CcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHH
Confidence 54 799999999977 88 99999999999999999999999999876
No 10
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.3e-32 Score=244.39 Aligned_cols=216 Identities=28% Similarity=0.346 Sum_probs=190.1
Q ss_pred CCCCCCCCcc-cccccccCCCChhhhc-CCHHHHHHHHHHcCCEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCH
Q psy17636 6 PPIDHSTIVY-EEVEKNFYQPHEDIAR-LTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTP 83 (222)
Q Consensus 6 ~~~~~~~~~~-~~~~k~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTp 83 (222)
.+++++...+ ++++++||.+..+... ++.++++.+|+.++|.+.|.++|.|+.+|++++|++.++++|.+.||..|||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptp 146 (518)
T PLN00206 67 VAVGAPKPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTP 146 (518)
T ss_pred CCcCCCchhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCH
Confidence 3566777654 8899999998887654 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHhCCCCCC----------------------------------------------------------------
Q psy17636 84 IQAQAVPAALSGRDII---------------------------------------------------------------- 99 (222)
Q Consensus 84 IQ~~~ip~il~g~dvi---------------------------------------------------------------- 99 (222)
||.+|||.+++|+|++
T Consensus 147 iQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~ 226 (518)
T PLN00206 147 IQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFK 226 (518)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCce
Confidence 9999999999999998
Q ss_pred -------------------------------------------------------------HHHHHHHHhhCCCCCeEEE
Q psy17636 100 -------------------------------------------------------------EPQVRSICDHVRPNRQTLL 118 (222)
Q Consensus 100 -------------------------------------------------------------~~~l~~Il~~~~~~~Q~~l 118 (222)
.+++..|+..++ ++|+++
T Consensus 227 ~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~ 305 (518)
T PLN00206 227 TALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLL 305 (518)
T ss_pred EEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEE
Confidence 556777777764 689999
Q ss_pred EccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCC-CCeEEEEecccHH--HH-H
Q psy17636 119 FSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLS-TGSLLIFVTKKCF--EL-V 194 (222)
Q Consensus 119 fSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~--~l-~ 194 (222)
||||++..++.++..++.++..+.++.....+..++|.++.++..+|...|...+..... .+++||||||+.. .+ .
T Consensus 306 ~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~ 385 (518)
T PLN00206 306 FSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLAN 385 (518)
T ss_pred EEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHH
Confidence 999999999999999999999999988877788899999999988888888777765432 3589999999976 67 7
Q ss_pred HhHH-CCceEEEecCCCCCChHHHhhcCC
Q psy17636 195 NLIA-KNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 195 ~L~~-~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.|.. .|+++..+||+|++++|..++..|
T Consensus 386 ~L~~~~g~~~~~~Hg~~~~~eR~~il~~F 414 (518)
T PLN00206 386 AITVVTGLKALSIHGEKSMKERREVMKSF 414 (518)
T ss_pred HHhhccCcceEEeeCCCCHHHHHHHHHHH
Confidence 7864 699999999999999999998765
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.8e-31 Score=238.07 Aligned_cols=164 Identities=31% Similarity=0.475 Sum_probs=152.1
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------- 99 (222)
Q Consensus 58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------- 99 (222)
.+|+++++++.++++|.++||..|||||.++||.++.|+|++
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 789999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence
Q ss_pred ---HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCC--CCCCeeEEEEEcCCCc-hHHHHHHHH
Q psy17636 100 ---EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGE--ANTDITQVVINLPQTQ-KLTWLTHNL 173 (222)
Q Consensus 100 ---~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~--~~~~i~q~~~~~~~~~-K~~~L~~~l 173 (222)
.+++..|++.+|.++|+++||||+|+.+..+++.++.+|..|.+..... +..+|.|+++.|++.+ |...|..++
T Consensus 189 ~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll 268 (513)
T COG0513 189 MGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLL 268 (513)
T ss_pred CCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999986554 8899999999999865 999887766
Q ss_pred HhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 174 VEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 174 ~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
... ...++||||+|+.. .+ ..|...|+++..|||+|+|++|.++|..|
T Consensus 269 ~~~-~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F 319 (513)
T COG0513 269 KDE-DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKF 319 (513)
T ss_pred hcC-CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHH
Confidence 543 45689999999976 88 99999999999999999999999999876
No 12
>KOG0338|consensus
Probab=99.97 E-value=2e-31 Score=229.86 Aligned_cols=164 Identities=27% Similarity=0.360 Sum_probs=149.9
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------- 99 (222)
Q Consensus 58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------- 99 (222)
.+|.+|+|+.+|++++..+||..|||||.++||..|-|+|++
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~P 260 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVP 260 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEec
Confidence 589999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 261 TRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRML 340 (691)
T KOG0338|consen 261 TRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRML 340 (691)
T ss_pred cHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHH
Confidence
Q ss_pred ----HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC---CchHHHHHHH
Q psy17636 100 ----EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ---TQKLTWLTHN 172 (222)
Q Consensus 100 ----~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~---~~K~~~L~~~ 172 (222)
.++++.|++.||++|||+||||||+++|..|+...+++|+.|.+.+...+...+.|.|+.+.. .++...|..+
T Consensus 341 eegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l 420 (691)
T KOG0338|consen 341 EEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL 420 (691)
T ss_pred HHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHH
Confidence 899999999999999999999999999999999999999999999988899999999998753 5677777665
Q ss_pred HHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 173 LVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 173 l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
+.... ...+|||+.|++. .+ -.|--.|+++..|||+|+|+||..+|.+|
T Consensus 421 ~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kF 472 (691)
T KOG0338|consen 421 ITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKF 472 (691)
T ss_pred HHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHH
Confidence 55544 6799999999976 77 77777899999999999999999999887
No 13
>KOG0340|consensus
Probab=99.96 E-value=1e-29 Score=211.12 Aligned_cols=166 Identities=27% Similarity=0.328 Sum_probs=148.2
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-------------------------------------
Q psy17636 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------- 99 (222)
Q Consensus 57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------- 99 (222)
...|++|||++++.+.|+.+|+.+|||||..|||.||+|+|+|
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTr 85 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTR 85 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchH
Confidence 4679999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 86 ELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrv 165 (442)
T KOG0340|consen 86 ELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRV 165 (442)
T ss_pred HHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhh
Confidence
Q ss_pred -----HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCC--CcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHH
Q psy17636 100 -----EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTD--PIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHN 172 (222)
Q Consensus 100 -----~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~--p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~ 172 (222)
.+++..|.+.+|..||+++||||+++.+.++....... +..+.+.+...+.+.+.|.|+.|+...|..+|+..
T Consensus 166 L~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~ 245 (442)
T KOG0340|consen 166 LAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHL 245 (442)
T ss_pred hccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHH
Confidence 77888889999999999999999999998887655554 45555555668889999999999999999999998
Q ss_pred HHhhCC--CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 173 LVEFLS--TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 173 l~~~~~--~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
|....+ .+.++||+||+.+ .| ..|+..++.+++|||.|+|++|..+|+.|
T Consensus 246 Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrF 300 (442)
T KOG0340|consen 246 LRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRF 300 (442)
T ss_pred HhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHH
Confidence 876654 5799999998866 66 89999999999999999999999999876
No 14
>KOG0327|consensus
Probab=99.96 E-value=7.3e-29 Score=207.96 Aligned_cols=164 Identities=21% Similarity=0.328 Sum_probs=153.8
Q ss_pred CCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------------
Q psy17636 56 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------ 99 (222)
Q Consensus 56 ~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------ 99 (222)
.+.+|++|+|++.|++.+...||++|+.||+.||+++..|.|++
T Consensus 24 vvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPt 103 (397)
T KOG0327|consen 24 VVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPT 103 (397)
T ss_pred HhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcch
Confidence 35789999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 104 reLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs 183 (397)
T KOG0327|consen 104 RELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLS 183 (397)
T ss_pred HHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhc
Confidence
Q ss_pred ---HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhh
Q psy17636 100 ---EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEF 176 (222)
Q Consensus 100 ---~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~ 176 (222)
.++|..|++.+|++.|+++||||+|.++..+++.|+.+|+.|.+...+.+.+.++|+|+.+...+|+..|..+..
T Consensus 184 ~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~-- 261 (397)
T KOG0327|consen 184 RGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR-- 261 (397)
T ss_pred cchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH--
Confidence 899999999999999999999999999999999999999999999999999999999999999889999966444
Q ss_pred CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 177 LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 177 ~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.-.+.+|||||+.. ++ ..|...|+.+.++||+|.|.+|+..+.+|
T Consensus 262 -~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef 309 (397)
T KOG0327|consen 262 -RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREF 309 (397)
T ss_pred -hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHh
Confidence 35799999999976 89 99999999999999999999999988765
No 15
>KOG0343|consensus
Probab=99.96 E-value=1.2e-28 Score=214.48 Aligned_cols=185 Identities=23% Similarity=0.341 Sum_probs=161.0
Q ss_pred cCCHHHHHHHHHHc-CCEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC----------
Q psy17636 31 RLTPQEAQELRAKS-GITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII---------- 99 (222)
Q Consensus 31 ~~~~~~~~~~~~~~-~i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi---------- 99 (222)
...+++++++...+ ++.+ ..++.|.+|+|+....++|++.+|..||.||+.+||..|.|+||+
T Consensus 47 ~~Eee~i~~l~~ky~ei~~------~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKT 120 (758)
T KOG0343|consen 47 QQEEEEIEELKQKYAEIDS------TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKT 120 (758)
T ss_pred hhhHHHHHHHHHHHHHhhh------hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCce
Confidence 34455666666654 3322 125689999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 121 LAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGR 200 (758)
T KOG0343|consen 121 LAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGR 200 (758)
T ss_pred eeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHH
Confidence
Q ss_pred --------------------------------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCC-
Q psy17636 100 --------------------------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDI- 146 (222)
Q Consensus 100 --------------------------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~- 146 (222)
...++.|++.+|+.|||+|||||-+..|..+|+..+.||.+|.+...
T Consensus 201 LLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a 280 (758)
T KOG0343|consen 201 LLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENA 280 (758)
T ss_pred HHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccc
Confidence 78999999999999999999999999999999999999999988743
Q ss_pred -CCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHC--CceEEEecCCCCCChHHHhhc
Q psy17636 147 -GEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAK--NYWLIQAVGILMCPKSPSRLS 220 (222)
Q Consensus 147 -~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~--g~~~~~lHg~~~q~~R~~~L~ 220 (222)
..++.++.|+|+.|+-.+|.++|..++.... ..++|||++|+++ .+ ..+... |++..+|||.|+|.+|...+.
T Consensus 281 ~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~ 359 (758)
T KOG0343|consen 281 VAATPSNLQQSYVIVPLEDKIDMLWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYK 359 (758)
T ss_pred cccChhhhhheEEEEehhhHHHHHHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHH
Confidence 4788999999999999999999999887765 4699999999987 56 666554 999999999999999999887
Q ss_pred CC
Q psy17636 221 LV 222 (222)
Q Consensus 221 ~~ 222 (222)
.|
T Consensus 360 ~F 361 (758)
T KOG0343|consen 360 KF 361 (758)
T ss_pred HH
Confidence 65
No 16
>KOG0326|consensus
Probab=99.95 E-value=1.4e-28 Score=202.30 Aligned_cols=163 Identities=22% Similarity=0.334 Sum_probs=148.2
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------- 99 (222)
Q Consensus 58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------- 99 (222)
..|++++|..+++..+.++||+.|+|||+++||.+|.|+|++
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtre 164 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRE 164 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecch
Confidence 359999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 165 lALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F 244 (459)
T KOG0326|consen 165 LALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDF 244 (459)
T ss_pred hhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhh
Confidence
Q ss_pred HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCC
Q psy17636 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLST 179 (222)
Q Consensus 100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~ 179 (222)
.+-+..++..+|+.+|.+|||||+|-.|..+..++|++|..|.+-. +.+...|.|+|-+|.+++|...|-.++.+. .-
T Consensus 245 ~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~-eLtl~GvtQyYafV~e~qKvhCLntLfskL-qI 322 (459)
T KOG0326|consen 245 QPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLME-ELTLKGVTQYYAFVEERQKVHCLNTLFSKL-QI 322 (459)
T ss_pred hhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhh-hhhhcchhhheeeechhhhhhhHHHHHHHh-cc
Confidence 7788999999999999999999999999999999999999998754 367889999999999999999986655554 35
Q ss_pred CeEEEEecccHH-H-H-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 180 GSLLIFVTKKCF-E-L-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 180 ~~~IVF~nt~~~-~-l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.+.|||||+..+ + + ....+.|++|..+|+.|-|+.|-..+.+|
T Consensus 323 NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdF 368 (459)
T KOG0326|consen 323 NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDF 368 (459)
T ss_pred cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhh
Confidence 699999999877 4 4 88999999999999999999999988776
No 17
>KOG0335|consensus
Probab=99.95 E-value=5.8e-28 Score=209.68 Aligned_cols=177 Identities=35% Similarity=0.481 Sum_probs=163.4
Q ss_pred CEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------
Q psy17636 46 ITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------- 99 (222)
Q Consensus 46 i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------- 99 (222)
+++.|.++|.++.+|.+-.+++.+..+++..||+.|||||+.+||.+..|+|++
T Consensus 62 v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~ 141 (482)
T KOG0335|consen 62 VKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGP 141 (482)
T ss_pred eeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCc
Confidence 456899999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 142 ~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~ 221 (482)
T KOG0335|consen 142 EDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK 221 (482)
T ss_pred ccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce
Confidence
Q ss_pred -----------------------HHHHHHHHhhCCC----CCeEEEEccccchHHHHHHHHhcCC-CcEEEeCCCCCCCC
Q psy17636 100 -----------------------EPQVRSICDHVRP----NRQTLLFSATFKKRIEKLARDVLTD-PIKIVQGDIGEANT 151 (222)
Q Consensus 100 -----------------------~~~l~~Il~~~~~----~~Q~~lfSAT~~~~v~~l~~~~l~~-p~~i~v~~~~~~~~ 151 (222)
+++|++|+..+.. .+|++|||||+|..++.++..++.+ .+.+.++..+..++
T Consensus 222 i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ 301 (482)
T KOG0335|consen 222 ISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSE 301 (482)
T ss_pred eehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccc
Confidence 7899999988743 7999999999999999999999985 99999999999999
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHhhC---CCC-----eEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhc
Q psy17636 152 DITQVVINLPQTQKLTWLTHNLVEFL---STG-----SLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLS 220 (222)
Q Consensus 152 ~i~q~~~~~~~~~K~~~L~~~l~~~~---~~~-----~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~ 220 (222)
++.|.+.+|.+.+|...|+.+|.... ..+ +++|||.|+.. .+ ..|...|+++.++||+.+|.+|+.+|+
T Consensus 302 ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~ 381 (482)
T KOG0335|consen 302 NITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALN 381 (482)
T ss_pred cceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHH
Confidence 99999999999999999999887554 233 89999999865 99 999999999999999999999999999
Q ss_pred CC
Q psy17636 221 LV 222 (222)
Q Consensus 221 ~~ 222 (222)
+|
T Consensus 382 ~F 383 (482)
T KOG0335|consen 382 DF 383 (482)
T ss_pred Hh
Confidence 87
No 18
>KOG0346|consensus
Probab=99.95 E-value=1.6e-27 Score=202.73 Aligned_cols=165 Identities=25% Similarity=0.318 Sum_probs=153.4
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------- 99 (222)
Q Consensus 58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------- 99 (222)
.+|++|||++.|++++.+.||..||-||+.|||.+|+|+|++
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 589999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence
Q ss_pred ---------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCC-CCCCCeeEEEEEcCCCchHHHH
Q psy17636 100 ---------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIG-EANTDITQVVINLPQTQKLTWL 169 (222)
Q Consensus 100 ---------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L 169 (222)
+++++.|.+++|+..|.+|+|||++++|+.+-+.+++||+.+.+...+ ..++++.|+++.|.+.+|+..|
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 899999999999999999999999999999999999999999888776 4468899999999999999988
Q ss_pred HHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 170 THNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 170 ~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
+.+|+-..-.+++|||+||... .| -+|...|++++.|.|+|++..|.+.++-|
T Consensus 259 yallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QF 314 (569)
T KOG0346|consen 259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQF 314 (569)
T ss_pred HHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHh
Confidence 7777655557899999999877 88 99999999999999999999999998755
No 19
>KOG0332|consensus
Probab=99.94 E-value=4.4e-27 Score=196.65 Aligned_cols=166 Identities=24% Similarity=0.313 Sum_probs=151.5
Q ss_pred CCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCC--CCCC----------------------------------
Q psy17636 56 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII---------------------------------- 99 (222)
Q Consensus 56 ~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g--~dvi---------------------------------- 99 (222)
.+.+|++|+|.|+++++|..|||..|+.||+.|+|.+|.. +++|
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLa 167 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLA 167 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeC
Confidence 3678999999999999999999999999999999999976 6787
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 168 PtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~t 247 (477)
T KOG0332|consen 168 PTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDT 247 (477)
T ss_pred chHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhc
Confidence
Q ss_pred ---HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHHHh
Q psy17636 100 ---EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNLVE 175 (222)
Q Consensus 100 ---~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~ 175 (222)
.++-..|...+|++.|.++||||+.+.+..+|....+|+..+.+........+|+|+|+.|+. .+|+..|.+ |..
T Consensus 248 qG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~-lyg 326 (477)
T KOG0332|consen 248 QGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVN-LYG 326 (477)
T ss_pred ccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHH-HHh
Confidence 567778888889999999999999999999999999999999998888999999999999987 789999876 666
Q ss_pred hCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 176 FLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 176 ~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
...-+++||||.|++. ++ ..|...|+.+..|||+|.-+||......|
T Consensus 327 ~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~F 376 (477)
T KOG0332|consen 327 LLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRF 376 (477)
T ss_pred hhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHH
Confidence 6666899999999977 89 99999999999999999999999887654
No 20
>KOG0342|consensus
Probab=99.94 E-value=1.5e-26 Score=199.14 Aligned_cols=166 Identities=24% Similarity=0.334 Sum_probs=151.7
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-------------------------------------
Q psy17636 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------- 99 (222)
Q Consensus 57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------- 99 (222)
...|+++.|++....+++++||..+|+||+++||+++.|+|++
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 3568899999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence
Q ss_pred -------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcC-CCcEEEeCCCC--CCCCCeeEEEEEcCCCchHHHH
Q psy17636 100 -------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLT-DPIKIVQGDIG--EANTDITQVVINLPQTQKLTWL 169 (222)
Q Consensus 100 -------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~-~p~~i~v~~~~--~~~~~i~q~~~~~~~~~K~~~L 169 (222)
.+++..|+..+|+.||+++||||+|.+|+++++..++ +|++|++...+ .+.+.+.|.|++++...++..|
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll 320 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLL 320 (543)
T ss_pred hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHH
Confidence 8999999999999999999999999999999999987 69999887665 6788999999999998888889
Q ss_pred HHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 170 THNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 170 ~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
+.+|++..+..++||||.|+.. .+ ..|....++|..|||+++|..|-+....|
T Consensus 321 ~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F 376 (543)
T KOG0342|consen 321 YTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEF 376 (543)
T ss_pred HHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHH
Confidence 9999888776899999999966 66 88888999999999999999998876544
No 21
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.94 E-value=7.3e-26 Score=207.83 Aligned_cols=165 Identities=25% Similarity=0.362 Sum_probs=150.2
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-------------------------------------
Q psy17636 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------- 99 (222)
Q Consensus 57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------- 99 (222)
.++|.+|+|++.++++|.++||.+|||+|.++||.+++|+|+|
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 4579999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~ 164 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM 164 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhc
Confidence
Q ss_pred --HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC
Q psy17636 100 --EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL 177 (222)
Q Consensus 100 --~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~ 177 (222)
.+++..|+..+|..+|+++||||+|..+..+++.++.+|..|.+.........+.|.++.+...+|...|..+|...
T Consensus 165 gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~- 243 (629)
T PRK11634 165 GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE- 243 (629)
T ss_pred ccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhc-
Confidence 56788899999999999999999999999999999999999988877777788999999999888999888776543
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
...++||||+|+.. .+ ..|...|+.+..+||+|+|.+|+..+..|
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~F 291 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHH
Confidence 45799999999976 88 99999999999999999999999988754
No 22
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.94 E-value=9.3e-26 Score=201.37 Aligned_cols=164 Identities=27% Similarity=0.383 Sum_probs=147.9
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-------------------------------------
Q psy17636 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------- 99 (222)
Q Consensus 57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------- 99 (222)
..+|++++|++.++++|.++||..|||||++|||.+++|+|++
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 3689999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~ 162 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDM 162 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCc
Confidence
Q ss_pred --HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC
Q psy17636 100 --EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL 177 (222)
Q Consensus 100 --~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~ 177 (222)
..++..++..+|..+|+++||||+|+.+..++..++.+|..+.+.... ....+.|+++.++..+|...|..++.. .
T Consensus 163 g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~-~ 240 (460)
T PRK11776 163 GFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLLLH-H 240 (460)
T ss_pred CcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHHHh-c
Confidence 677888999999999999999999999999999999999999886654 456699999999998899988776654 3
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..+++||||||+.. .+ ..|...|+++..+||+|++.+|...+..|
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F 288 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRF 288 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 45799999999977 88 99999999999999999999999988765
No 23
>KOG0345|consensus
Probab=99.93 E-value=6.4e-26 Score=194.34 Aligned_cols=164 Identities=23% Similarity=0.327 Sum_probs=147.3
Q ss_pred CCcCCCC--CCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------------
Q psy17636 58 SSFGHFG--FDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------ 99 (222)
Q Consensus 58 ~~f~~l~--l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------ 99 (222)
.+|++++ |+++|++++..+||..+||+|..|||.+++++||+
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 4688886 45999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence
Q ss_pred -----------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCC--CCCCeeEEEEEcCCCchH
Q psy17636 100 -----------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGE--ANTDITQVVINLPQTQKL 166 (222)
Q Consensus 100 -----------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~--~~~~i~q~~~~~~~~~K~ 166 (222)
+.+++.|++.+|++|.|.|||||+.+++.++++..++||+.|.|+..+. ++..+..+|..|+..+|.
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 8999999999999999999999999999999999999999999988875 888899999999999999
Q ss_pred HHHHHHHHhhCCCCeEEEEecccHH--HH-HHhH--HCCceEEEecCCCCCChHHHhhcCC
Q psy17636 167 TWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLI--AKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 167 ~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~--~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..|+++|... ..+++|||+.|++. .. ..|. ..+.+..++||.|+|.+|.++|..|
T Consensus 244 ~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F 303 (567)
T KOG0345|consen 244 SQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAF 303 (567)
T ss_pred HHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHH
Confidence 9999988763 46899999999976 22 3333 3478999999999999999998765
No 24
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=4.3e-25 Score=195.15 Aligned_cols=164 Identities=25% Similarity=0.327 Sum_probs=146.4
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------- 99 (222)
Q Consensus 58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------- 99 (222)
.+|++++|++.++++|.++||..|||||++|||.+++|+|++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 689999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad 167 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 167 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH
Confidence
Q ss_pred -------HHHHHHHHhhCCC--CCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHH
Q psy17636 100 -------EPQVRSICDHVRP--NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLT 170 (222)
Q Consensus 100 -------~~~l~~Il~~~~~--~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~ 170 (222)
..++..|+..++. .+|+++||||++..+.+++..++.+|..+.+........++.+.++.+...+|...|.
T Consensus 168 ~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~ 247 (423)
T PRK04837 168 RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQ 247 (423)
T ss_pred HHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHH
Confidence 5677788888874 6789999999999999999999999999988877777788999888887788988887
Q ss_pred HHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 171 HNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 171 ~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.++... ...++||||+++.. .+ ..|...|+++..+||+|++++|...+..|
T Consensus 248 ~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F 301 (423)
T PRK04837 248 TLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEF 301 (423)
T ss_pred HHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHH
Confidence 766543 45799999999966 88 99999999999999999999999998765
No 25
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.93 E-value=2.8e-25 Score=198.04 Aligned_cols=164 Identities=29% Similarity=0.389 Sum_probs=146.4
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------- 99 (222)
Q Consensus 58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------- 99 (222)
++|++|+|++.++++|.++||..|||||.+|||.+++|+|++
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 479999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR 160 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence
Q ss_pred ------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHH
Q psy17636 100 ------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNL 173 (222)
Q Consensus 100 ------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l 173 (222)
..++..++..++.++|+++||||++.++..++..++.+|..+.+.........+.|.+..++...|...|..++
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHH
Confidence 46677888889999999999999999999999999999999988777677788999999988888877665544
Q ss_pred HhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 174 VEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 174 ~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
......++|||||++.. .+ ..|...|+++..+||+|++++|..++..|
T Consensus 241 -~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F 291 (456)
T PRK10590 241 -GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADF 291 (456)
T ss_pred -HcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH
Confidence 33445799999999976 88 99999999999999999999999998765
No 26
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=4.5e-25 Score=201.11 Aligned_cols=165 Identities=28% Similarity=0.359 Sum_probs=146.9
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-------------------------------------
Q psy17636 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------- 99 (222)
Q Consensus 57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------- 99 (222)
.++|++|+|++.|+++|.++||..|||||++|||.+++|+|++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 3579999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence
Q ss_pred ---------HHHHHHHHhhCCC--CCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHH
Q psy17636 100 ---------EPQVRSICDHVRP--NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTW 168 (222)
Q Consensus 100 ---------~~~l~~Il~~~~~--~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~ 168 (222)
..++..|+..++. ++|+++||||++..+..++..++.+|..+.+........++.|.++.+...+|...
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~ 247 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTL 247 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHH
Confidence 4567778888876 78999999999999999999999999888777666677889999999888889888
Q ss_pred HHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 169 LTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 169 L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
|+.++.. ....++||||||+.. .+ ..|...|+++..+||+|++.+|...+..|
T Consensus 248 L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~F 303 (572)
T PRK04537 248 LLGLLSR-SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRF 303 (572)
T ss_pred HHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHH
Confidence 8776654 345799999999976 88 99999999999999999999999998765
No 27
>KOG0337|consensus
Probab=99.92 E-value=3.5e-25 Score=187.71 Aligned_cols=165 Identities=22% Similarity=0.268 Sum_probs=155.5
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------- 99 (222)
Q Consensus 58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------- 99 (222)
-+|..|||+..+.+++.+.||..|||||+++||.+|+|+|++
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsptr 100 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTR 100 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcH
Confidence 579999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 101 eLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemg 180 (529)
T KOG0337|consen 101 ELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMG 180 (529)
T ss_pred HHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhh
Confidence
Q ss_pred -HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCC
Q psy17636 100 -EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLS 178 (222)
Q Consensus 100 -~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~ 178 (222)
.+++.+++..+|.++||++||||+|..+-.+++.-+.+|+.|.+.-+..+++.++..+..+...+|..+|+.++.....
T Consensus 181 fqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~ 260 (529)
T KOG0337|consen 181 FQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIK 260 (529)
T ss_pred hHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhcccc
Confidence 6999999999999999999999999999999999999999999888889999999999999999999999998888776
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..+++|||.|+.. .+ ..|+..|+.+..+.|+|+|..|.-++.+|
T Consensus 261 ~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F 307 (529)
T KOG0337|consen 261 DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDF 307 (529)
T ss_pred ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccc
Confidence 7799999999966 67 99999999999999999999999887776
No 28
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.91 E-value=3.8e-23 Score=183.32 Aligned_cols=164 Identities=29% Similarity=0.404 Sum_probs=143.7
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------- 99 (222)
Q Consensus 58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------- 99 (222)
++|++++|++.++++|.++||..|||+|.++||.+++|+|++
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 479999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence
Q ss_pred ----HHHHHHHHhhCCCCCeEEEEccccch-HHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHH
Q psy17636 100 ----EPQVRSICDHVRPNRQTLLFSATFKK-RIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNL 173 (222)
Q Consensus 100 ----~~~l~~Il~~~~~~~Q~~lfSAT~~~-~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l 173 (222)
...+..|...++..+|+++||||++. .+..++..++.+|+.+.+........++.|.++.++. ..|...|..++
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~ 240 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLL 240 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 56677777777888999999999985 5889999999999999888777778889999988876 66777776555
Q ss_pred HhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 174 VEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 174 ~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
. ....+++|||||++.. .+ ..|...|+++..+||+|++.+|..++..|
T Consensus 241 ~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f 291 (434)
T PRK11192 241 K-QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRL 291 (434)
T ss_pred h-cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHH
Confidence 4 3345799999999976 88 99999999999999999999999988765
No 29
>KOG4284|consensus
Probab=99.90 E-value=8.4e-24 Score=187.20 Aligned_cols=166 Identities=22% Similarity=0.279 Sum_probs=146.9
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC----------------------------------
Q psy17636 54 PYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII---------------------------------- 99 (222)
Q Consensus 54 p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi---------------------------------- 99 (222)
|.-...|+++.|...++..|++.||..|||||.+|||.++.|-|+|
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~ 100 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVT 100 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEe
Confidence 4445689999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 101 PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~ 180 (980)
T KOG4284|consen 101 PTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLM 180 (980)
T ss_pred cchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhh
Confidence
Q ss_pred -----HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCC--------chH
Q psy17636 100 -----EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQT--------QKL 166 (222)
Q Consensus 100 -----~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~--------~K~ 166 (222)
.++|..|+..+|..||++.||||.|..+.++..+||++|..|.........-.|+|+++.+++. .|.
T Consensus 181 ~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlkl 260 (980)
T KOG4284|consen 181 DTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKL 260 (980)
T ss_pred chhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHH
Confidence 7899999999999999999999999999999999999999999998888888999999988764 255
Q ss_pred HHHHHHHHhhCCCCeEEEEecc--cHHHH-HHhHHCCceEEEecCCCCCChHHHhhc
Q psy17636 167 TWLTHNLVEFLSTGSLLIFVTK--KCFEL-VNLIAKNYWLIQAVGILMCPKSPSRLS 220 (222)
Q Consensus 167 ~~L~~~l~~~~~~~~~IVF~nt--~~~~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~ 220 (222)
..|-.++ +..+..++||||+. |++.+ ..|+..|++|.++.|.|+|.+|..+..
T Consensus 261 q~L~~vf-~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~ 316 (980)
T KOG4284|consen 261 QKLTHVF-KSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVD 316 (980)
T ss_pred HHHHHHH-hhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHH
Confidence 5554433 33456799999985 56688 999999999999999999999998865
No 30
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.89 E-value=6.1e-22 Score=177.47 Aligned_cols=165 Identities=28% Similarity=0.338 Sum_probs=145.9
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-------------------------------------
Q psy17636 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------- 99 (222)
Q Consensus 57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------- 99 (222)
..+|.+++|++.++++|.+.||..|||+|.+|||.+++|+|+|
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 4679999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence
Q ss_pred ---------HHHHHHHHhhCCC--CCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHH
Q psy17636 100 ---------EPQVRSICDHVRP--NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTW 168 (222)
Q Consensus 100 ---------~~~l~~Il~~~~~--~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~ 168 (222)
.+++..|+..++. ++|+++||||++.++..++..++.+|..+.+........++.|.+..+...+|...
T Consensus 246 ah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~ 325 (475)
T PRK01297 246 ADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKL 325 (475)
T ss_pred HHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHH
Confidence 4567788888764 68999999999999999999999999999888777777889999998888888888
Q ss_pred HHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 169 LTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 169 L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
|..++.. ....++||||+++.. .+ ..|...|+++..+||+|++++|...+..|
T Consensus 326 l~~ll~~-~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~F 381 (475)
T PRK01297 326 LYNLVTQ-NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGF 381 (475)
T ss_pred HHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHH
Confidence 8766554 345699999999976 77 99999999999999999999999988765
No 31
>KOG0347|consensus
Probab=99.89 E-value=2.8e-24 Score=187.26 Aligned_cols=166 Identities=24% Similarity=0.338 Sum_probs=142.2
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCC-CCCC----------------------------------
Q psy17636 55 YPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG-RDII---------------------------------- 99 (222)
Q Consensus 55 ~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g-~dvi---------------------------------- 99 (222)
..+..|.+|+|+.+++++|..+||+.|||||..+||+++.| .|++
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 34567999999999999999999999999999999999999 7999
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence
Q ss_pred --------------------HHHHHHHHhhCC-----CCCeEEEEccccch---------------------HHHHHHHH
Q psy17636 100 --------------------EPQVRSICDHVR-----PNRQTLLFSATFKK---------------------RIEKLARD 133 (222)
Q Consensus 100 --------------------~~~l~~Il~~~~-----~~~Q~~lfSAT~~~---------------------~v~~l~~~ 133 (222)
.+.+..|+..+. ..+||+.||||++- .++.+.+.
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 677888888774 46899999999862 23333333
Q ss_pred h--cCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecC
Q psy17636 134 V--LTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVG 208 (222)
Q Consensus 134 ~--l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg 208 (222)
. ..+|..|++.+...+...+....+.|+-.+|.-+|+.+|... +|++|||||+... .| -.|...+++...||+
T Consensus 418 ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA 495 (731)
T KOG0347|consen 418 IGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHA 495 (731)
T ss_pred hCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCchhhH
Confidence 2 247899999998889999999999999999999987665543 6899999999866 89 999999999999999
Q ss_pred CCCCChHHHhhcCC
Q psy17636 209 ILMCPKSPSRLSLV 222 (222)
Q Consensus 209 ~~~q~~R~~~L~~~ 222 (222)
.|.|.+|.++|..|
T Consensus 496 ~M~QKqRLknLEkF 509 (731)
T KOG0347|consen 496 SMIQKQRLKNLEKF 509 (731)
T ss_pred HHHHHHHHHhHHHH
Confidence 99999999999876
No 32
>PTZ00424 helicase 45; Provisional
Probab=99.87 E-value=4.1e-21 Score=168.44 Aligned_cols=165 Identities=20% Similarity=0.287 Sum_probs=142.0
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-------------------------------------
Q psy17636 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------- 99 (222)
Q Consensus 57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------- 99 (222)
..+|+++++++.++++|.+.||..|||+|.+|||.+++|+|++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 5789999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 107 ~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~ 186 (401)
T PTZ00424 107 ELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRG 186 (401)
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcc
Confidence
Q ss_pred -HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHHHhhC
Q psy17636 100 -EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNLVEFL 177 (222)
Q Consensus 100 -~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~~ 177 (222)
...+..++..++++.|++++|||+|..+..+...++.+|..+.+........++.++++.++. ..+...+..++. ..
T Consensus 187 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 265 (401)
T PTZ00424 187 FKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYE-TL 265 (401)
T ss_pred hHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHH-hc
Confidence 345667778888899999999999999999999999999888777666667788998888876 446666655443 33
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
...++||||+|+.. .+ ..|...|+.+..+||+|++.+|...+.+|
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f 313 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREF 313 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 45799999999866 78 99999999999999999999999988765
No 33
>KOG0344|consensus
Probab=99.87 E-value=2.8e-22 Score=176.06 Aligned_cols=187 Identities=26% Similarity=0.355 Sum_probs=166.3
Q ss_pred HHHHHHHHHcCCEEecCCCCCCCCCcCC----CCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-----------
Q psy17636 35 QEAQELRAKSGITVSGADPPYPVSSFGH----FGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII----------- 99 (222)
Q Consensus 35 ~~~~~~~~~~~i~v~g~~~p~~~~~f~~----l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi----------- 99 (222)
+.....|+.+.+.|.|.++|+|+.+|.+ ...++.+++++...||..|||||++|||.++.++|++
T Consensus 109 ~~~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtl 188 (593)
T KOG0344|consen 109 EKLLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTL 188 (593)
T ss_pred cccccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchh
Confidence 3445677888999999999999999998 4689999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 189 af~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~ 268 (593)
T KOG0344|consen 189 AFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILIS 268 (593)
T ss_pred hhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhc
Confidence
Q ss_pred --------------------------------------HHHHHHHHhhCC-CCCeEEEEccccchHHHHHHHHhcCCCcE
Q psy17636 100 --------------------------------------EPQVRSICDHVR-PNRQTLLFSATFKKRIEKLARDVLTDPIK 140 (222)
Q Consensus 100 --------------------------------------~~~l~~Il~~~~-~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~ 140 (222)
..|+.+|++.+. ++..+-+||||++..|++.+...+.+++.
T Consensus 269 TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~ 348 (593)
T KOG0344|consen 269 TPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKR 348 (593)
T ss_pred CHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhcccee
Confidence 567888888874 46677899999999999999999999999
Q ss_pred EEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHh-HHCCceEEEecCCCCCChH
Q psy17636 141 IVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNL-IAKNYWLIQAVGILMCPKS 215 (222)
Q Consensus 141 i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L-~~~g~~~~~lHg~~~q~~R 215 (222)
|.++..+..+..|.|..++|-+ ..|...+.+.+.... ..+++||+.+..+ +| ..| ...++++..+||+.+|.+|
T Consensus 349 vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~-~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qr 427 (593)
T KOG0344|consen 349 VIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGF-KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQR 427 (593)
T ss_pred EEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccC-CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHH
Confidence 9999999899999999999977 789888888777665 4599999998766 88 999 7889999999999999999
Q ss_pred HHhhcCC
Q psy17636 216 PSRLSLV 222 (222)
Q Consensus 216 ~~~L~~~ 222 (222)
+..++-|
T Consensus 428 de~~~~F 434 (593)
T KOG0344|consen 428 DETMERF 434 (593)
T ss_pred HHHHHHH
Confidence 9988754
No 34
>KOG0348|consensus
Probab=99.85 E-value=1.6e-21 Score=169.67 Aligned_cols=165 Identities=23% Similarity=0.337 Sum_probs=135.7
Q ss_pred CCcCCCCCCHHHHHHHHH-CCCCCCCHHHHhHHHHHhCCCCCC-------------------------------------
Q psy17636 58 SSFGHFGFDEVLMKALRK-CEYTSPTPIQAQAVPAALSGRDII------------------------------------- 99 (222)
Q Consensus 58 ~~f~~l~l~~~l~~~l~~-~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------- 99 (222)
..|..+||++.+...|.. |+|+.||.||.+|||.+|+|+|++
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~AL 215 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYAL 215 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEE
Confidence 569999999999999985 699999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 216 VivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDE 295 (708)
T KOG0348|consen 216 VIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDE 295 (708)
T ss_pred EEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecc
Confidence
Q ss_pred ---------HHHHHHHHhhC-------------CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCC------------
Q psy17636 100 ---------EPQVRSICDHV-------------RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGD------------ 145 (222)
Q Consensus 100 ---------~~~l~~Il~~~-------------~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~------------ 145 (222)
+.+|..|++.+ |..+|.+|+|||+++.|..++..-++||+.|....
T Consensus 296 aDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~ 375 (708)
T KOG0348|consen 296 ADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAV 375 (708)
T ss_pred hhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhh
Confidence 67777777765 23589999999999999999999999999998221
Q ss_pred -------------CCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC---CCCeEEEEecccHH-H-----H-HHhHH----
Q psy17636 146 -------------IGEANTDITQVVINLPQTQKLTWLTHNLVEFL---STGSLLIFVTKKCF-E-----L-VNLIA---- 198 (222)
Q Consensus 146 -------------~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~---~~~~~IVF~nt~~~-~-----l-~~L~~---- 198 (222)
...+++++.|+|.+|+..-++..|..+|.+.. ...++|||++++.. + + ..+..
T Consensus 376 ~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~ 455 (708)
T KOG0348|consen 376 QEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEG 455 (708)
T ss_pred hhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccccc
Confidence 02456789999999999999998888777654 23589999998854 1 2 22222
Q ss_pred --------------CCceEEEecCCCCCChHHHhhcCC
Q psy17636 199 --------------KNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 199 --------------~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.+.++.-|||+|+|++|-..|..|
T Consensus 456 ~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~F 493 (708)
T KOG0348|consen 456 SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEF 493 (708)
T ss_pred ccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhh
Confidence 245789999999999999998766
No 35
>KOG0329|consensus
Probab=99.75 E-value=8.2e-19 Score=141.01 Aligned_cols=164 Identities=23% Similarity=0.348 Sum_probs=133.9
Q ss_pred EecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC----------------------------
Q psy17636 48 VSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII---------------------------- 99 (222)
Q Consensus 48 v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi---------------------------- 99 (222)
+.|..+......|.++-|.|++++++-++||++|+++|..|||..+-|-||+
T Consensus 32 ~kgsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~v 111 (387)
T KOG0329|consen 32 KKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQV 111 (387)
T ss_pred ccCcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeE
Confidence 3444444445679999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvl 191 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVL 191 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeeh
Confidence
Q ss_pred ------------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCC-CCCCCeeEEEEEcCCCchH
Q psy17636 100 ------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIG-EANTDITQVVINLPQTQKL 166 (222)
Q Consensus 100 ------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~ 166 (222)
..++..|++..|...|+++||||++++++-..++||.+|..|-+.... .+...++|+|+.+.+.+|.
T Consensus 192 DEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKN 271 (387)
T KOG0329|consen 192 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKN 271 (387)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhh
Confidence 678889999999999999999999999999999999999999887765 4667899999999998888
Q ss_pred HHHHHHHHhhCCCCeEEEEecccHH-----H-H-HHhHHCCceE----EEecCCCCC
Q psy17636 167 TWLTHNLVEFLSTGSLLIFVTKKCF-----E-L-VNLIAKNYWL----IQAVGILMC 212 (222)
Q Consensus 167 ~~L~~~l~~~~~~~~~IVF~nt~~~-----~-l-~~L~~~g~~~----~~lHg~~~q 212 (222)
..|..+|.. ....+++||+.+... . + ..|-..|+.. .++.-||+.
T Consensus 272 rkl~dLLd~-LeFNQVvIFvKsv~Rl~f~kr~vat~lfgrgmdiervNi~~NYdmp~ 327 (387)
T KOG0329|consen 272 RKLNDLLDV-LEFNQVVIFVKSVQRLSFQKRLVATDLFGRGMDIERVNIVFNYDMPE 327 (387)
T ss_pred hhhhhhhhh-hhhcceeEeeehhhhhhhhhhhHHhhhhccccCcccceeeeccCCCC
Confidence 888776654 346799999987644 2 3 4555556543 344555554
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.74 E-value=3.7e-17 Score=153.08 Aligned_cols=159 Identities=15% Similarity=0.118 Sum_probs=111.7
Q ss_pred CCcCCC--CCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------------
Q psy17636 58 SSFGHF--GFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------ 99 (222)
Q Consensus 58 ~~f~~l--~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------ 99 (222)
..|..+ .+++.+.++|.++||++|||+|.+|||.+++|+|++
T Consensus 12 a~~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~Ptr 91 (742)
T TIGR03817 12 GRTAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTK 91 (742)
T ss_pred cccCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChH
Confidence 345554 389999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 92 aLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 92 ALAADQLRAVRELTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence
Q ss_pred --HHH-------HHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC--------
Q psy17636 100 --EPQ-------VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-------- 162 (222)
Q Consensus 100 --~~~-------l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-------- 162 (222)
..+ +..+....+.++|+++||||+++..+ ++..++.+|..+ +........ ..+.+++.+.
T Consensus 172 ~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~-~~~~~~~~p~~~~~~~~~ 248 (742)
T TIGR03817 172 VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRG-ARTVALWEPPLTELTGEN 248 (742)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcC-ceEEEEecCCcccccccc
Confidence 122 23333334567899999999998854 677788888654 433332222 2333332221
Q ss_pred ---------CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHC--------CceEEEecCCCCCChHHHhhcCC
Q psy17636 163 ---------TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAK--------NYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 163 ---------~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~--------g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.++...|..++. ...++||||||+.. .+ ..|+.. +.++..+||+|++++|...+..|
T Consensus 249 ~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 249 GAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred ccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 133444433333 24699999999976 55 666543 67899999999999999987654
No 37
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.73 E-value=6.9e-17 Score=150.53 Aligned_cols=114 Identities=14% Similarity=0.148 Sum_probs=88.7
Q ss_pred HHHHHHHHhhC--CCC---CeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHH
Q psy17636 100 EPQVRSICDHV--RPN---RQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLV 174 (222)
Q Consensus 100 ~~~l~~Il~~~--~~~---~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~ 174 (222)
.+++..|++.+ ++. +|+++||||+|.++.+++..++.++..+.+........++.|+ +.++...|...++..+.
T Consensus 187 ~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~ 265 (844)
T TIGR02621 187 QELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL-VPPSDEKFLSTMVKELN 265 (844)
T ss_pred HHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEE-EecChHHHHHHHHHHHH
Confidence 68889999864 432 7999999999999999999999888888877666666778875 44555555554443332
Q ss_pred hh--CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHH
Q psy17636 175 EF--LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSP 216 (222)
Q Consensus 175 ~~--~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~ 216 (222)
.. ...+++||||||+.. .+ ..|+..|+ ..|||+|+|.+|.
T Consensus 266 ~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~ 310 (844)
T TIGR02621 266 LLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERD 310 (844)
T ss_pred HHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHh
Confidence 21 234789999999977 88 99999888 9999999999999
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.57 E-value=8.8e-14 Score=124.73 Aligned_cols=107 Identities=12% Similarity=0.004 Sum_probs=76.3
Q ss_pred CCCeEEEEccccchHHHHHHHHhc--CCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEeccc
Q psy17636 112 PNRQTLLFSATFKKRIEKLARDVL--TDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK 189 (222)
Q Consensus 112 ~~~Q~~lfSAT~~~~v~~l~~~~l--~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~ 189 (222)
++.|++++|||.+..+.......+ .+|..+.... ...++...+... .......|+.++.+..+..++||||+|+
T Consensus 161 ~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~---~r~nl~~~v~~~-~~~~~~~l~~~l~~~~~~~~~IIF~~s~ 236 (470)
T TIGR00614 161 PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF---DRPNLYYEVRRK-TPKILEDLLRFIRKEFKGKSGIIYCPSR 236 (470)
T ss_pred CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC---CCCCcEEEEEeC-CccHHHHHHHHHHHhcCCCceEEEECcH
Confidence 467899999999998877666654 4666554322 233443222211 1245556667676544455779999999
Q ss_pred HH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 190 CF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 190 ~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.+ .+ ..|...|+++..+||+|++++|...+..|
T Consensus 237 ~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F 272 (470)
T TIGR00614 237 KKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKF 272 (470)
T ss_pred HHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHH
Confidence 77 88 99999999999999999999999988754
No 39
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.56 E-value=1.1e-13 Score=131.81 Aligned_cols=106 Identities=14% Similarity=0.042 Sum_probs=75.8
Q ss_pred CCCeEEEEccccchHHHHHHHHhcC--CCcEEEeCCCCCCCCCeeEEEEEcCCCch-HHHHHHHHHhhCCCCeEEEEecc
Q psy17636 112 PNRQTLLFSATFKKRIEKLARDVLT--DPIKIVQGDIGEANTDITQVVINLPQTQK-LTWLTHNLVEFLSTGSLLIFVTK 188 (222)
Q Consensus 112 ~~~Q~~lfSAT~~~~v~~l~~~~l~--~p~~i~v~~~~~~~~~i~q~~~~~~~~~K-~~~L~~~l~~~~~~~~~IVF~nt 188 (222)
++.|+++||||++..+++.+...+. ++..+... ....++ +|.+++...+ ...|..++.......++||||+|
T Consensus 615 p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S---f~RpNL--~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~S 689 (1195)
T PLN03137 615 PNIPVLALTATATASVKEDVVQALGLVNCVVFRQS---FNRPNL--WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLS 689 (1195)
T ss_pred CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc---cCccce--EEEEeccchhHHHHHHHHHHhcccCCCceeEeCc
Confidence 4678999999999998886666554 45443321 223344 3344444333 34455655544435689999999
Q ss_pred cHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 189 KCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 189 ~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
+.+ .+ ..|...|+++..+||+|++++|..++..|
T Consensus 690 Rke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F 726 (1195)
T PLN03137 690 RMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQW 726 (1195)
T ss_pred hhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHH
Confidence 976 88 99999999999999999999999988765
No 40
>PRK09401 reverse gyrase; Reviewed
Probab=99.55 E-value=6e-14 Score=136.46 Aligned_cols=91 Identities=18% Similarity=0.038 Sum_probs=72.3
Q ss_pred CCeEEEEccccchH-HHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccH-
Q psy17636 113 NRQTLLFSATFKKR-IEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKC- 190 (222)
Q Consensus 113 ~~Q~~lfSAT~~~~-v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~- 190 (222)
++|+++||||+++. +.. ..+.++..+.++.......+|.|.|+.++ +|...|..++... + .++||||||+.
T Consensus 268 ~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l-~-~~~LIFv~t~~~ 340 (1176)
T PRK09401 268 KGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRL-G-DGGLIFVPSDKG 340 (1176)
T ss_pred CceEEEEeCCCCccchHH---HHhhccceEEecCcccccCCceEEEEEcc--cHHHHHHHHHHhc-C-CCEEEEEecccC
Confidence 68999999999864 443 34466777888877777889999999877 6777777766543 3 58999999863
Q ss_pred ----HHH-HHhHHCCceEEEecCCC
Q psy17636 191 ----FEL-VNLIAKNYWLIQAVGIL 210 (222)
Q Consensus 191 ----~~l-~~L~~~g~~~~~lHg~~ 210 (222)
+++ ..|+..|+++..+||+|
T Consensus 341 ~~~ae~l~~~L~~~gi~v~~~hg~l 365 (1176)
T PRK09401 341 KEYAEELAEYLEDLGINAELAISGF 365 (1176)
T ss_pred hHHHHHHHHHHHHCCCcEEEEeCcH
Confidence 288 99999999999999999
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.55 E-value=1.7e-13 Score=126.37 Aligned_cols=105 Identities=13% Similarity=0.095 Sum_probs=75.2
Q ss_pred CCCeEEEEccccchHHHHHHHHh--cCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEeccc
Q psy17636 112 PNRQTLLFSATFKKRIEKLARDV--LTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK 189 (222)
Q Consensus 112 ~~~Q~~lfSAT~~~~v~~l~~~~--l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~ 189 (222)
++.|++++|||.+..+....... +.+|.... ... ...++ .+..+....+...|+..+... ..+++||||+|+
T Consensus 173 p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~~--~r~nl--~~~v~~~~~~~~~l~~~l~~~-~~~~~IIFc~tr 246 (607)
T PRK11057 173 PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSF--DRPNI--RYTLVEKFKPLDQLMRYVQEQ-RGKSGIIYCNSR 246 (607)
T ss_pred CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CCC--CCCcc--eeeeeeccchHHHHHHHHHhc-CCCCEEEEECcH
Confidence 36789999999998876644444 34665433 221 22344 233444455556666666543 457999999999
Q ss_pred HH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 190 CF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 190 ~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.+ .+ ..|...|+++..+||+|++++|..++..|
T Consensus 247 ~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F 282 (607)
T PRK11057 247 AKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAF 282 (607)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHH
Confidence 77 88 99999999999999999999999988765
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.54 E-value=1.5e-13 Score=126.44 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=80.3
Q ss_pred HHHHHhhCCCCCeEEEEccccchHHHHHHHHhcC--CCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCC
Q psy17636 103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLT--DPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTG 180 (222)
Q Consensus 103 l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~--~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~ 180 (222)
+..+...+| +.+++++|||.+..+.......+. ++..+. .. ....++ .+..+....+...+..++.... ..
T Consensus 153 l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~--~~r~nl--~~~v~~~~~~~~~l~~~l~~~~-~~ 225 (591)
T TIGR01389 153 LGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI-TS--FDRPNL--RFSVVKKNNKQKFLLDYLKKHR-GQ 225 (591)
T ss_pred HHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cC--CCCCCc--EEEEEeCCCHHHHHHHHHHhcC-CC
Confidence 333344444 445999999999998876666664 454432 11 222333 3333445667777777776543 57
Q ss_pred eEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 181 SLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 181 ~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
++||||+|+.. .+ ..|...|+++..+||+|++++|...+..|
T Consensus 226 ~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F 270 (591)
T TIGR01389 226 SGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDF 270 (591)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHH
Confidence 99999999976 88 99999999999999999999999988754
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=99.51 E-value=9.8e-14 Score=130.30 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=39.5
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHH-HhCCCCCC
Q psy17636 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA-ALSGRDII 99 (222)
Q Consensus 58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~-il~g~dvi 99 (222)
++|+++++++.+.+.+++.||.+|+|+|.+||+. +++|+|++
T Consensus 1 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvl 43 (720)
T PRK00254 1 MKVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLV 43 (720)
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEE
Confidence 4689999999999999999999999999999996 88999988
No 44
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.51 E-value=2.1e-13 Score=120.62 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=119.9
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHH-HhCCCCCC-------------------------------------
Q psy17636 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA-ALSGRDII------------------------------------- 99 (222)
Q Consensus 58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~-il~g~dvi------------------------------------- 99 (222)
...+++.+|+.+.+.|+..||++.+|+|..|+.. +++|.|++
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVAL 273 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVAL 273 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHh
Confidence 3467899999999999999999999999999988 67999987
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 274 ANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~de 353 (830)
T COG1202 274 ANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDE 353 (830)
T ss_pred hcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccch
Confidence
Q ss_pred --HHHHHHHHh---hCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcC-CCchHHHHHHHH
Q psy17636 100 --EPQVRSICD---HVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLP-QTQKLTWLTHNL 173 (222)
Q Consensus 100 --~~~l~~Il~---~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~-~~~K~~~L~~~l 173 (222)
.+.++.++. ++-++.|.+.+|||+.+. +++|+..--+++..+- -+-.++.+++++. ..+|++.+..+.
T Consensus 354 ERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~-----RPVplErHlvf~~~e~eK~~ii~~L~ 427 (830)
T COG1202 354 ERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDE-----RPVPLERHLVFARNESEKWDIIARLV 427 (830)
T ss_pred hcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecC-----CCCChhHeeeeecCchHHHHHHHHHH
Confidence 223333333 334689999999999655 6788777556665532 2334666777887 488998776655
Q ss_pred HhhC-------CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHh
Q psy17636 174 VEFL-------STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSR 218 (222)
Q Consensus 174 ~~~~-------~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~ 218 (222)
.... -.++||||+||+.. .+ ..|...|+++..+|++|++.+|-+.
T Consensus 428 k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~v 482 (830)
T COG1202 428 KREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSV 482 (830)
T ss_pred HHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHH
Confidence 5332 13699999999855 88 9999999999999999999999764
No 45
>PRK02362 ski2-like helicase; Provisional
Probab=99.48 E-value=3.5e-13 Score=126.89 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=39.7
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHH-HhCCCCCC
Q psy17636 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA-ALSGRDII 99 (222)
Q Consensus 58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~-il~g~dvi 99 (222)
|.|++++|++.+++++++.||.+|+|+|.+|++. +++|+|++
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvl 43 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLL 43 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEE
Confidence 5699999999999999999999999999999998 78999988
No 46
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.46 E-value=1.1e-12 Score=127.46 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=82.8
Q ss_pred HHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCC-chHHHHHHHHHhhCCCCeEE
Q psy17636 105 SICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQT-QKLTWLTHNLVEFLSTGSLL 183 (222)
Q Consensus 105 ~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~-~K~~~L~~~l~~~~~~~~~I 183 (222)
..+..++.++|+++||||.++.+..++...+.++..|...... ...+++.+...... .|... +.+....++++
T Consensus 740 e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~i----l~el~r~gqv~ 813 (1147)
T PRK10689 740 ERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAI----LREILRGGQVY 813 (1147)
T ss_pred HHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHH----HHHHhcCCeEE
Confidence 3455667789999999998888888888888999888764432 23466665544331 22222 22333457999
Q ss_pred EEecccHH--HH-HHhHHC--CceEEEecCCCCCChHHHhhcCC
Q psy17636 184 IFVTKKCF--EL-VNLIAK--NYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 184 VF~nt~~~--~l-~~L~~~--g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
||||++.. .+ ..|.+. ++++..+||+|++++|+.++..|
T Consensus 814 vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~F 857 (1147)
T PRK10689 814 YLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF 857 (1147)
T ss_pred EEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 99999866 77 888877 88999999999999999998765
No 47
>PRK14701 reverse gyrase; Provisional
Probab=99.44 E-value=2e-12 Score=128.71 Aligned_cols=102 Identities=18% Similarity=0.132 Sum_probs=77.4
Q ss_pred CCCCe-EEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEeccc
Q psy17636 111 RPNRQ-TLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK 189 (222)
Q Consensus 111 ~~~~Q-~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~ 189 (222)
|+.+| +++||||++..-. ....++++..+.++.......++.|.|+.++..+| ..|+.++... ..++||||+|+
T Consensus 266 ~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~ 340 (1638)
T PRK14701 266 GNKIGCLIVASATGKAKGD--RVKLYRELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPID 340 (1638)
T ss_pred CCCccEEEEEecCCCchhH--HHHHhhcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEecc
Confidence 45566 5679999986411 12345788888888887788899999998876656 4566666543 36899999987
Q ss_pred H-----HHH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 190 C-----FEL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 190 ~-----~~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
. +++ ..|...|+++..+||+ |..++..|
T Consensus 341 ~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F 374 (1638)
T PRK14701 341 EGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLF 374 (1638)
T ss_pred ccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHH
Confidence 4 388 9999999999999996 88877665
No 48
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.41 E-value=5.8e-12 Score=120.18 Aligned_cols=115 Identities=14% Similarity=0.063 Sum_probs=79.5
Q ss_pred HHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeE
Q psy17636 103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSL 182 (222)
Q Consensus 103 l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~ 182 (222)
....+..++.+.|+++||||..+....++...+.++..|...+.+ ...|++++.......-...+ +......+++
T Consensus 589 ~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~~~i~~~i---~~el~~g~qv 663 (926)
T TIGR00580 589 QKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDPELVREAI---RRELLRGGQV 663 (926)
T ss_pred HHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCHHHHHHHH---HHHHHcCCeE
Confidence 344555566789999999998777666666667788877654432 23466665433221101112 2223345799
Q ss_pred EEEecccHH--HH-HHhHHC--CceEEEecCCCCCChHHHhhcCC
Q psy17636 183 LIFVTKKCF--EL-VNLIAK--NYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 183 IVF~nt~~~--~l-~~L~~~--g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
+||||++.+ .+ ..|+.. ++++..+||+|++++|+.++..|
T Consensus 664 ~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F 708 (926)
T TIGR00580 664 FYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEF 708 (926)
T ss_pred EEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHH
Confidence 999999876 77 888874 89999999999999999998765
No 49
>KOG0349|consensus
Probab=99.40 E-value=4.2e-13 Score=115.32 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=89.1
Q ss_pred HHHHHHHHhhCCC------CCeEEEEccccch-HHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-C-chHHHHH
Q psy17636 100 EPQVRSICDHVRP------NRQTLLFSATFKK-RIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-T-QKLTWLT 170 (222)
Q Consensus 100 ~~~l~~Il~~~~~------~~Q~~lfSAT~~~-~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~-~K~~~L~ 170 (222)
.+-|.++...+|. +.|.+++|||+.. +|.+++.+.|.=|..|++...+..++.+.|.+..+.. - .-+..|.
T Consensus 381 ~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr 460 (725)
T KOG0349|consen 381 DDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLR 460 (725)
T ss_pred HHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceeecCCccCccHHHHh
Confidence 4555666666652 4799999999965 5889999999999999999988889988887765543 1 1111121
Q ss_pred HHH----------------------------Hh--------hCCCCeEEEEecccHH--HH-HHhHHC---CceEEEecC
Q psy17636 171 HNL----------------------------VE--------FLSTGSLLIFVTKKCF--EL-VNLIAK---NYWLIQAVG 208 (222)
Q Consensus 171 ~~l----------------------------~~--------~~~~~~~IVF~nt~~~--~l-~~L~~~---g~~~~~lHg 208 (222)
..| +. ...-.++||||.|+.+ .| .++... .++|+++||
T Consensus 461 ~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhg 540 (725)
T KOG0349|consen 461 QFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHG 540 (725)
T ss_pred hhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEec
Confidence 111 10 0123589999999855 88 888775 479999999
Q ss_pred CCCCChHHHhhcCC
Q psy17636 209 ILMCPKSPSRLSLV 222 (222)
Q Consensus 209 ~~~q~~R~~~L~~~ 222 (222)
|....+|-.+|.-|
T Consensus 541 DrkP~Erk~nle~F 554 (725)
T KOG0349|consen 541 DRKPDERKANLESF 554 (725)
T ss_pred CCChhHHHHHHHhh
Confidence 99999998888754
No 50
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.39 E-value=5.3e-12 Score=123.12 Aligned_cols=96 Identities=9% Similarity=0.040 Sum_probs=71.9
Q ss_pred CCCCCe--EEEEccc-cchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEe
Q psy17636 110 VRPNRQ--TLLFSAT-FKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFV 186 (222)
Q Consensus 110 ~~~~~Q--~~lfSAT-~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~ 186 (222)
+++++| +++|||| +|..+.. .+++++..+.++.......+|.|.|+.+.. +...|.+++... ..++||||
T Consensus 261 ~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv 333 (1171)
T TIGR01054 261 IPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYV 333 (1171)
T ss_pred hhhccCcEEEEEeCCCCccccHH---HHcccccceEecCccccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEE
Confidence 455666 5679999 6765543 356777778888777778899999886654 344565655543 35899999
Q ss_pred ccc---HH--HH-HHhHHCCceEEEecCCCCC
Q psy17636 187 TKK---CF--EL-VNLIAKNYWLIQAVGILMC 212 (222)
Q Consensus 187 nt~---~~--~l-~~L~~~g~~~~~lHg~~~q 212 (222)
+|+ .. ++ ..|...|+++..+||+|++
T Consensus 334 ~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~ 365 (1171)
T TIGR01054 334 SIDYGKEKAEEIAEFLENHGVKAVAYHATKPK 365 (1171)
T ss_pred eccccHHHHHHHHHHHHhCCceEEEEeCCCCH
Confidence 998 33 88 9999999999999999973
No 51
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.37 E-value=1e-11 Score=115.82 Aligned_cols=111 Identities=19% Similarity=0.153 Sum_probs=66.6
Q ss_pred HHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCC--CcEEEeCCCCCCCCCeeEEEEEcCCC-----chHHHHHHHHHh
Q psy17636 103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTD--PIKIVQGDIGEANTDITQVVINLPQT-----QKLTWLTHNLVE 175 (222)
Q Consensus 103 l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~--p~~i~v~~~~~~~~~i~q~~~~~~~~-----~K~~~L~~~l~~ 175 (222)
+.++....+ +.|++..|||+.+. .++++-.... +..|.... ...+.+..++..... .-...++..+.+
T Consensus 174 LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~---~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~ 248 (814)
T COG1201 174 LERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVS---AAKKLEIKVISPVEDLIYDEELWAALYERIAE 248 (814)
T ss_pred HHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcc---cCCcceEEEEecCCccccccchhHHHHHHHHH
Confidence 334333334 89999999999643 4444433332 44442221 223344444333222 112223333333
Q ss_pred hC-CCCeEEEEecccHH--HH-HHhHHCC-ceEEEecCCCCCChHHHh
Q psy17636 176 FL-STGSLLIFVTKKCF--EL-VNLIAKN-YWLIQAVGILMCPKSPSR 218 (222)
Q Consensus 176 ~~-~~~~~IVF~nt~~~--~l-~~L~~~g-~~~~~lHg~~~q~~R~~~ 218 (222)
.. ....++||+|||.. .+ ..|+..+ ..+...||++|.++|...
T Consensus 249 ~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~v 296 (814)
T COG1201 249 LVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEV 296 (814)
T ss_pred HHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHH
Confidence 22 23589999999966 77 8888887 899999999999999764
No 52
>PRK01172 ski2-like helicase; Provisional
Probab=99.34 E-value=8.3e-12 Score=116.64 Aligned_cols=41 Identities=15% Similarity=0.347 Sum_probs=38.6
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC
Q psy17636 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99 (222)
Q Consensus 58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi 99 (222)
+.|++++|++.+.+.+.+.||. ++|+|.+|++.+++|+|++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvl 41 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVI 41 (674)
T ss_pred CcHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEE
Confidence 4688999999999999999997 9999999999999999988
No 53
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.34 E-value=7.8e-12 Score=119.53 Aligned_cols=44 Identities=14% Similarity=-0.012 Sum_probs=36.0
Q ss_pred CCeEEEEecccHH--HH-HHhHH------CCceEEEecCCCCCChHHHhhcCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIA------KNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~------~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.+++||||||+.. .+ ..|+. .+..+..+||+|++++|...+..|
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~f 336 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKL 336 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHH
Confidence 4689999999965 66 77765 357899999999999999887654
No 54
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.15 E-value=4.4e-10 Score=104.16 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=78.9
Q ss_pred HHHHHHHHhhCC-CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC----------CchHHH
Q psy17636 100 EPQVRSICDHVR-PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ----------TQKLTW 168 (222)
Q Consensus 100 ~~~l~~Il~~~~-~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~----------~~K~~~ 168 (222)
.+.+..++..++ ..+|+++||||++++++.+ ..++++|..|.+.. .....|+++|+.... .+|..
T Consensus 307 ~DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~- 382 (675)
T PHA02653 307 GDIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEKKN- 382 (675)
T ss_pred hhHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHHHH-
Confidence 555556665543 4579999999999999887 57899999988753 345678888875431 12322
Q ss_pred HHHHHHhhC--CCCeEEEEecccHH--HH-HHhHHC--CceEEEecCCCCCC
Q psy17636 169 LTHNLVEFL--STGSLLIFVTKKCF--EL-VNLIAK--NYWLIQAVGILMCP 213 (222)
Q Consensus 169 L~~~l~~~~--~~~~~IVF~nt~~~--~l-~~L~~~--g~~~~~lHg~~~q~ 213 (222)
++..+.... ..+++||||+++.+ .+ ..|... |+.+..|||+|+|.
T Consensus 383 ~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~ 434 (675)
T PHA02653 383 IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI 434 (675)
T ss_pred HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH
Confidence 234443322 24689999999977 77 888877 79999999999985
No 55
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.14 E-value=4e-10 Score=101.89 Aligned_cols=116 Identities=15% Similarity=0.061 Sum_probs=79.4
Q ss_pred HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcC--CCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHHHhh
Q psy17636 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLT--DPIKIVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNLVEF 176 (222)
Q Consensus 100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~--~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~ 176 (222)
...+..+...+| +..++.++||.++.++.-+...+. ++..+..+ ...+||.-.++...+ .++...+.. + ..
T Consensus 154 Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s---fdRpNi~~~v~~~~~~~~q~~fi~~-~-~~ 227 (590)
T COG0514 154 YRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGS---FDRPNLALKVVEKGEPSDQLAFLAT-V-LP 227 (590)
T ss_pred HHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec---CCCchhhhhhhhcccHHHHHHHHHh-h-cc
Confidence 445555555555 778999999999998887766654 55444322 334555544444332 334433322 1 12
Q ss_pred CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636 177 LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL 221 (222)
Q Consensus 177 ~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~ 221 (222)
...+++||||.||+. .+ .+|...|+++..+||||+.++|+..-..
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~ 275 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQA 275 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHH
Confidence 334679999999976 88 9999999999999999999999986543
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.10 E-value=4.8e-10 Score=97.07 Aligned_cols=116 Identities=14% Similarity=0.076 Sum_probs=75.6
Q ss_pred HHHHHHhhCC-CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC--CchHHHHHHHHHhhCC
Q psy17636 102 QVRSICDHVR-PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ--TQKLTWLTHNLVEFLS 178 (222)
Q Consensus 102 ~l~~Il~~~~-~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~--~~K~~~L~~~l~~~~~ 178 (222)
.+..+++.++ .+.|+++||||+|+.+.+++..+...+........ .......|.+..+.. ..|...+..++.....
T Consensus 143 ~l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 221 (358)
T TIGR01587 143 LILAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK-EERRFERHRFIKIESDKVGEISSLERLLEFIKK 221 (358)
T ss_pred HHHHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc-cccccccccceeeccccccCHHHHHHHHHHhhC
Confidence 3555555554 47899999999998888877665443221111111 001112344433332 4566666555544445
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCc--eEEEecCCCCCChHHHh
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNY--WLIQAVGILMCPKSPSR 218 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~--~~~~lHg~~~q~~R~~~ 218 (222)
.+++||||||+.+ .+ ..|++.+. .+..+||+|++.+|...
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~ 266 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKK 266 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHH
Confidence 6799999999977 78 99988776 59999999999999764
No 57
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.04 E-value=2.3e-09 Score=101.61 Aligned_cols=113 Identities=20% Similarity=0.265 Sum_probs=83.0
Q ss_pred HHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHH-----HHHHHHHhh
Q psy17636 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLT-----WLTHNLVEF 176 (222)
Q Consensus 102 ~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~-----~L~~~l~~~ 176 (222)
-+.++++.++++.|+++||||++.+ .+ ..++.++..|.+... .-.|+++|..++..++.. .+...+..
T Consensus 138 ll~~i~~~lr~~lqlilmSATl~~~--~l-~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~- 210 (812)
T PRK11664 138 LLLDVQQGLRDDLKLLIMSATLDND--RL-QQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLRQ- 210 (812)
T ss_pred HHHHHHHhCCccceEEEEecCCCHH--HH-HHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHHh-
Confidence 4556677788899999999999865 23 467777766665432 224788888777666653 23333322
Q ss_pred CCCCeEEEEecccHH--HH-HHhHH---CCceEEEecCCCCCChHHHhhcCC
Q psy17636 177 LSTGSLLIFVTKKCF--EL-VNLIA---KNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 177 ~~~~~~IVF~nt~~~--~l-~~L~~---~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..+.+||||+++.+ .+ ..|.. .++.+..+||+|++++|..++..|
T Consensus 211 -~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~ 261 (812)
T PRK11664 211 -ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPA 261 (812)
T ss_pred -CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccc
Confidence 25799999999977 77 88876 589999999999999999988754
No 58
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.03 E-value=2.9e-09 Score=100.86 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=81.3
Q ss_pred HHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHH-----HHHHHHHhhC
Q psy17636 103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLT-----WLTHNLVEFL 177 (222)
Q Consensus 103 l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~-----~L~~~l~~~~ 177 (222)
+..+...++++.|+++||||++... ...++.++..|.+... .-.|+++|..++..++.. .+...+..
T Consensus 136 l~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-- 207 (819)
T TIGR01970 136 ALDVQSSLREDLKILAMSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-- 207 (819)
T ss_pred HHHHHHhcCCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHHh--
Confidence 4556666788999999999998763 3567777766665432 224788887776555432 23333322
Q ss_pred CCCeEEEEecccHH--HH-HHhHH---CCceEEEecCCCCCChHHHhhcCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIA---KNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~---~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..+++||||+++.+ .+ ..|.. .++.+..|||+|++++|..++..|
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~ 258 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPD 258 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhc
Confidence 25799999999977 67 88876 489999999999999999998754
No 59
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.97 E-value=5.5e-09 Score=83.13 Aligned_cols=82 Identities=45% Similarity=0.778 Sum_probs=75.2
Q ss_pred cCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC----------------------------------------
Q psy17636 60 FGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII---------------------------------------- 99 (222)
Q Consensus 60 f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi---------------------------------------- 99 (222)
|+++++++.+.+.+.+.||..|++.|.++++.+++|+|++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 7899999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence
Q ss_pred HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEE
Q psy17636 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141 (222)
Q Consensus 100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i 141 (222)
...+..++..++.++|++++|||+++.+..++..++++|+.|
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 455666777777889999999999999999999999999876
No 60
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.88 E-value=3.3e-08 Score=85.80 Aligned_cols=114 Identities=13% Similarity=0.031 Sum_probs=75.0
Q ss_pred HHHhhCCCCCeEEEEccccchHHHHHHHHh--cCCCcEEEeCC-----C-------------CCCCCCeeEEEEEcCCCc
Q psy17636 105 SICDHVRPNRQTLLFSATFKKRIEKLARDV--LTDPIKIVQGD-----I-------------GEANTDITQVVINLPQTQ 164 (222)
Q Consensus 105 ~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~--l~~p~~i~v~~-----~-------------~~~~~~i~q~~~~~~~~~ 164 (222)
.+++......+++++|||+++.+.+..... +..++.+..+. . ......+.+.+.. ....
T Consensus 173 ~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 251 (357)
T TIGR03158 173 QLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDF 251 (357)
T ss_pred HHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCch
Confidence 344433445799999999999877776654 55555432222 0 0112367777766 3345
Q ss_pred hHHHHHH---HHHhh---CCCCeEEEEecccHH--HH-HHhHHCC--ceEEEecCCCCCChHHHhh
Q psy17636 165 KLTWLTH---NLVEF---LSTGSLLIFVTKKCF--EL-VNLIAKN--YWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 165 K~~~L~~---~l~~~---~~~~~~IVF~nt~~~--~l-~~L~~~g--~~~~~lHg~~~q~~R~~~L 219 (222)
|...|.. .+.+. .+.+++||||||+.. .+ ..|+..| +.+..+||+|++.+|++.+
T Consensus 252 ~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~ 317 (357)
T TIGR03158 252 KEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM 317 (357)
T ss_pred hHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc
Confidence 5544422 22221 235699999999976 88 9998764 6889999999999998764
No 61
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.88 E-value=1.2e-08 Score=92.44 Aligned_cols=43 Identities=7% Similarity=-0.089 Sum_probs=36.2
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL 221 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~ 221 (222)
..+++|||++.+. .+ +.|...|.++..+||+|++++|...+..
T Consensus 344 ~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~ 389 (501)
T PHA02558 344 GENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKI 389 (501)
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHH
Confidence 3578888876655 78 9999999999999999999999986654
No 62
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.84 E-value=9.4e-08 Score=89.55 Aligned_cols=107 Identities=15% Similarity=-0.006 Sum_probs=63.3
Q ss_pred CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhh-CCCCeEEEEeccc
Q psy17636 111 RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEF-LSTGSLLIFVTKK 189 (222)
Q Consensus 111 ~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~~~IVF~nt~ 189 (222)
...+|+++||||..+....+......++..+.... .....+.+.++... . ...++..+.+. ....+++|||++.
T Consensus 407 ~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p--~~r~~i~~~~~~~~--~-~~~~~~~i~~~~~~g~q~~v~~~~i 481 (681)
T PRK10917 407 GENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELP--PGRKPITTVVIPDS--R-RDEVYERIREEIAKGRQAYVVCPLI 481 (681)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCC--CCCCCcEEEEeCcc--c-HHHHHHHHHHHHHcCCcEEEEEccc
Confidence 34689999999976554333321111333333211 22234555544322 2 22233444433 2346999999853
Q ss_pred H--------H--HH-HHhHHC--CceEEEecCCCCCChHHHhhcCC
Q psy17636 190 C--------F--EL-VNLIAK--NYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 190 ~--------~--~l-~~L~~~--g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
. . .+ +.|... ++++..+||+|++++|...+..|
T Consensus 482 e~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F 527 (681)
T PRK10917 482 EESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAF 527 (681)
T ss_pred ccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 1 1 55 666655 58999999999999999988765
No 63
>KOG0350|consensus
Probab=98.81 E-value=1.1e-08 Score=89.65 Aligned_cols=111 Identities=17% Similarity=0.095 Sum_probs=87.7
Q ss_pred CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCC----CCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEe
Q psy17636 111 RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGD----IGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFV 186 (222)
Q Consensus 111 ~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~----~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~ 186 (222)
.+..+.++||||++..-.++...-+..|....+.. .-..+..+.|+++.++...|...+..++.. .+..++|+|+
T Consensus 358 ~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~-~k~~r~lcf~ 436 (620)
T KOG0350|consen 358 YPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS-NKLNRTLCFV 436 (620)
T ss_pred CchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHH-hhcceEEEEe
Confidence 34457899999998888888888888896665542 336788999999999998898888765544 4567999999
Q ss_pred cccHH--HH-HH----hHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 187 TKKCF--EL-VN----LIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 187 nt~~~--~l-~~----L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
|+... .+ .. +...++++..+.|.+++..|.+.|+.|
T Consensus 437 ~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f 479 (620)
T KOG0350|consen 437 NSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKF 479 (620)
T ss_pred cchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHH
Confidence 98754 44 44 445688899999999999999998876
No 64
>KOG0351|consensus
Probab=98.71 E-value=2.3e-07 Score=88.60 Aligned_cols=104 Identities=11% Similarity=-0.048 Sum_probs=75.9
Q ss_pred CeEEEEccccchHHHHHHHHhc--CCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH
Q psy17636 114 RQTLLFSATFKKRIEKLARDVL--TDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF 191 (222)
Q Consensus 114 ~Q~~lfSAT~~~~v~~l~~~~l--~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~ 191 (222)
.-++..+||.+..|++-+-..+ .+|..+. ......|+.-.+..-...+....++..+....+...+||+|.++.+
T Consensus 421 vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ 497 (941)
T KOG0351|consen 421 VPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKE 497 (941)
T ss_pred CCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcch
Confidence 7899999999999888655554 4777543 3344566655544333233333344555666667899999998855
Q ss_pred --HH-HHhHHCCceEEEecCCCCCChHHHhhc
Q psy17636 192 --EL-VNLIAKNYWLIQAVGILMCPKSPSRLS 220 (222)
Q Consensus 192 --~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~ 220 (222)
.+ ..|+..|++++.+|++|+..+|.+.-.
T Consensus 498 ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~ 529 (941)
T KOG0351|consen 498 CEQVSAVLRSLGKSAAFYHAGLPPKERETVQK 529 (941)
T ss_pred HHHHHHHHHHhchhhHhhhcCCCHHHHHHHHH
Confidence 88 999999999999999999999998654
No 65
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=98.70 E-value=1.4e-07 Score=93.62 Aligned_cols=119 Identities=16% Similarity=0.223 Sum_probs=70.2
Q ss_pred HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcC--CCcEEEeCCCCCCCCCeeEEEEEcCCCch------------
Q psy17636 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLT--DPIKIVQGDIGEANTDITQVVINLPQTQK------------ 165 (222)
Q Consensus 100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~--~p~~i~v~~~~~~~~~i~q~~~~~~~~~K------------ 165 (222)
...+.+|...++.+.|+++||||+++ .+++++ ++. +++.|.. ........++ .++.+.+..+
T Consensus 146 el~LeRL~~l~~~~~QrIgLSATI~n-~eevA~-~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~ 221 (1490)
T PRK09751 146 ALSLERLDALLHTSAQRIGLSATVRS-ASDVAA-FLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDS 221 (1490)
T ss_pred HHHHHHHHHhCCCCCeEEEEEeeCCC-HHHHHH-HhcCCCCEEEEC-CCCCcccceE-EEEecCchhhcccccccccccc
Confidence 34566666666778999999999987 466664 553 4665532 2222222333 2222222110
Q ss_pred --------HHHH-HHHHHhhCCCCeEEEEecccHH--HH-HHhHHCC---------------------------------
Q psy17636 166 --------LTWL-THNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKN--------------------------------- 200 (222)
Q Consensus 166 --------~~~L-~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g--------------------------------- 200 (222)
...+ ...+.......++||||||+.. .+ ..|+..+
T Consensus 222 ~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (1490)
T PRK09751 222 HAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDV 301 (1490)
T ss_pred chhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccc
Confidence 0111 1222223345799999999965 55 6665431
Q ss_pred ceEEEecCCCCCChHHHhhcCC
Q psy17636 201 YWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 201 ~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
+.+..+||+|++++|......|
T Consensus 302 ~ia~~HHGsLSkeeR~~IE~~f 323 (1490)
T PRK09751 302 FIARSHHGSVSKEQRAITEQAL 323 (1490)
T ss_pred eeeeeccccCCHHHHHHHHHHH
Confidence 2267899999999999887654
No 66
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.70 E-value=3.5e-07 Score=85.04 Aligned_cols=103 Identities=18% Similarity=0.088 Sum_probs=60.4
Q ss_pred CCeEEEEccccchHHHHHHHHhcC--CCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhh-CCCCeEEEEeccc
Q psy17636 113 NRQTLLFSATFKKRIEKLARDVLT--DPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEF-LSTGSLLIFVTKK 189 (222)
Q Consensus 113 ~~Q~~lfSAT~~~~v~~l~~~~l~--~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~~~IVF~nt~ 189 (222)
.+|++++|||..+....++ ... +...+..-. .....+...++ ....+ ..++..+.+. ....+++|||++.
T Consensus 386 ~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~p--~~r~~i~~~~~--~~~~~-~~~~~~i~~~l~~g~q~~v~~~~i 458 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLALT--VYGDLDTSIIDELP--PGRKPITTVLI--KHDEK-DIVYEFIEEEIAKGRQAYVVYPLI 458 (630)
T ss_pred CCCEEEEeCCCCcHHHHHH--hcCCcceeeeccCC--CCCCceEEEEe--CcchH-HHHHHHHHHHHHhCCcEEEEEccc
Confidence 5789999999655432222 222 222222111 11223444443 33333 3344555543 2456999999764
Q ss_pred H--------H--HH-HHhHH--CCceEEEecCCCCCChHHHhhcCC
Q psy17636 190 C--------F--EL-VNLIA--KNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 190 ~--------~--~l-~~L~~--~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
. . .+ ..|.. .|+++..+||+|++++|...+..|
T Consensus 459 ~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F 504 (630)
T TIGR00643 459 EESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEF 504 (630)
T ss_pred cccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 1 1 45 56654 488999999999999999988765
No 67
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.68 E-value=4.2e-08 Score=90.34 Aligned_cols=99 Identities=9% Similarity=-0.059 Sum_probs=78.0
Q ss_pred eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--
Q psy17636 115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF-- 191 (222)
Q Consensus 115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~-- 191 (222)
....||||.+...+++...|.-+++.|.... .......+.++.++..+|...|...+.... ...++||||+|+..
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~k--p~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se 487 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNR--PSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASE 487 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCC--CccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 5678999999988899999988887765433 223345567788888899999988876643 24689999999976
Q ss_pred HH-HHhHHCCceEEEecCCCCCChH
Q psy17636 192 EL-VNLIAKNYWLIQAVGILMCPKS 215 (222)
Q Consensus 192 ~l-~~L~~~g~~~~~lHg~~~q~~R 215 (222)
.+ ..|...|+++..|||++++.+|
T Consensus 488 ~L~~~L~~~gi~~~~Lhg~~~~rE~ 512 (656)
T PRK12898 488 RLSALLREAGLPHQVLNAKQDAEEA 512 (656)
T ss_pred HHHHHHHHCCCCEEEeeCCcHHHHH
Confidence 78 9999999999999998654444
No 68
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.65 E-value=2.6e-07 Score=90.42 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=74.2
Q ss_pred HHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCc---hHHHH---HHHHHh-
Q psy17636 103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQ---KLTWL---THNLVE- 175 (222)
Q Consensus 103 l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~---K~~~L---~~~l~~- 175 (222)
++.++.. +++.|+++||||++. +.+++.|.+.| .|.+.... -.|+++|..+...+ +.+.+ +..+..
T Consensus 209 Lk~lL~~-rpdlKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l 281 (1294)
T PRK11131 209 LKELLPR-RPDLKVIITSATIDP--ERFSRHFNNAP-IIEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDEL 281 (1294)
T ss_pred HHHhhhc-CCCceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHH
Confidence 4444332 247899999999974 46776665556 45665432 23677777664322 23333 222222
Q ss_pred -hCCCCeEEEEecccHH--HH-HHhHHCCce---EEEecCCCCCChHHHhhc
Q psy17636 176 -FLSTGSLLIFVTKKCF--EL-VNLIAKNYW---LIQAVGILMCPKSPSRLS 220 (222)
Q Consensus 176 -~~~~~~~IVF~nt~~~--~l-~~L~~~g~~---~~~lHg~~~q~~R~~~L~ 220 (222)
....+.+||||+++.+ .+ ..|...|++ +..|||+|++++|.+.+.
T Consensus 282 ~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~ 333 (1294)
T PRK11131 282 GREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQ 333 (1294)
T ss_pred hcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhc
Confidence 1245789999999987 78 999888765 678999999999998875
No 69
>KOG0353|consensus
Probab=98.34 E-value=6.6e-06 Score=70.53 Aligned_cols=104 Identities=12% Similarity=0.045 Sum_probs=72.9
Q ss_pred CCCeEEEEccccchHHHHHHHHhcC--CCcEEEeCCCCCCCCCeeEEEEEcCCCc--hHHHHHHHHHhhCCCCeEEEEec
Q psy17636 112 PNRQTLLFSATFKKRIEKLARDVLT--DPIKIVQGDIGEANTDITQVVINLPQTQ--KLTWLTHNLVEFLSTGSLLIFVT 187 (222)
Q Consensus 112 ~~~Q~~lfSAT~~~~v~~l~~~~l~--~p~~i~v~~~~~~~~~i~q~~~~~~~~~--K~~~L~~~l~~~~~~~~~IVF~n 187 (222)
+...++.++||.+..|-.-++..+. ....++.+ ...+++...+..-|..+ -.+-+..++...+.....||||-
T Consensus 249 ~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~---fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~ 325 (695)
T KOG0353|consen 249 KGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG---FNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCF 325 (695)
T ss_pred CCCceeeeehhhhcchhhHHHHHHhHHhhheeecc---cCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEe
Confidence 4567899999999888777776654 33444332 34566776666666532 23334444544455568899997
Q ss_pred ccHH--HH-HHhHHCCceEEEecCCCCCChHHHh
Q psy17636 188 KKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSR 218 (222)
Q Consensus 188 t~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~ 218 (222)
++.+ .+ ..|+..|+.+..+|..|..++|..+
T Consensus 326 sq~d~ekva~alkn~gi~a~~yha~lep~dks~~ 359 (695)
T KOG0353|consen 326 SQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGA 359 (695)
T ss_pred ccccHHHHHHHHHhcCccccccccccCccccccc
Confidence 7755 88 9999999999999999999988643
No 70
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.33 E-value=6.4e-06 Score=81.10 Aligned_cols=112 Identities=18% Similarity=0.223 Sum_probs=73.4
Q ss_pred HHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCC------chHHHHHHHHHh
Q psy17636 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQT------QKLTWLTHNLVE 175 (222)
Q Consensus 102 ~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~------~K~~~L~~~l~~ 175 (222)
.+++++.. .++.|++++|||++. +.+++.|...|+ |.+.... -.++.+|..+... ++...+...+..
T Consensus 201 lLk~il~~-rpdLKlIlmSATld~--~~fa~~F~~apv-I~V~Gr~---~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~ 273 (1283)
T TIGR01967 201 YLKQLLPR-RPDLKIIITSATIDP--ERFSRHFNNAPI-IEVSGRT---YPVEVRYRPLVEEQEDDDLDQLEAILDAVDE 273 (1283)
T ss_pred HHHHHHhh-CCCCeEEEEeCCcCH--HHHHHHhcCCCE-EEECCCc---ccceeEEecccccccchhhhHHHHHHHHHHH
Confidence 35555544 357899999999974 567766655554 5554322 1355555544321 233334343332
Q ss_pred h--CCCCeEEEEecccHH--HH-HHhHHCC---ceEEEecCCCCCChHHHhhc
Q psy17636 176 F--LSTGSLLIFVTKKCF--EL-VNLIAKN---YWLIQAVGILMCPKSPSRLS 220 (222)
Q Consensus 176 ~--~~~~~~IVF~nt~~~--~l-~~L~~~g---~~~~~lHg~~~q~~R~~~L~ 220 (222)
. ...+.+|||++++.+ .+ ..|...+ +.+..|||+|++++|...+.
T Consensus 274 l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~ 326 (1283)
T TIGR01967 274 LFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQ 326 (1283)
T ss_pred HHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhC
Confidence 2 135799999999987 77 8888764 46899999999999998765
No 71
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.28 E-value=1.8e-05 Score=75.70 Aligned_cols=120 Identities=11% Similarity=0.021 Sum_probs=76.9
Q ss_pred HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcC---------CCchHHHHH
Q psy17636 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLP---------QTQKLTWLT 170 (222)
Q Consensus 100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~---------~~~K~~~L~ 170 (222)
...+.++++..+...|+++.|||+... .+++..+.+......+... ..+...+..+..-+ ...+...+.
T Consensus 219 lRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~-g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~ 296 (851)
T COG1205 219 LRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDED-GSPRGLRYFVRREPPIRELAESIRRSALAELA 296 (851)
T ss_pred HHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCC-CCCCCceEEEEeCCcchhhhhhcccchHHHHH
Confidence 444445555556789999999999666 5677777776655544433 34455555555555 224444443
Q ss_pred HHHHhhC-CCCeEEEEecccHH------HH-HHhHHCC----ceEEEecCCCCCChHHHhhcC
Q psy17636 171 HNLVEFL-STGSLLIFVTKKCF------EL-VNLIAKN----YWLIQAVGILMCPKSPSRLSL 221 (222)
Q Consensus 171 ~~l~~~~-~~~~~IVF~nt~~~------~l-~~L~~~g----~~~~~lHg~~~q~~R~~~L~~ 221 (222)
.+..... +.-++|+|+.++.. .. ..+...| ..+..+||+|..++|......
T Consensus 297 ~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~ 359 (851)
T COG1205 297 TLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAE 359 (851)
T ss_pred HHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHH
Confidence 3222222 34699999998855 22 4555566 789999999999999876554
No 72
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=97.98 E-value=3.5e-05 Score=72.83 Aligned_cols=102 Identities=8% Similarity=-0.138 Sum_probs=70.1
Q ss_pred eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCee-EEEEEcCCCchHHHHHHHHHhh-CCCCeEEEEecccHH-
Q psy17636 115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDIT-QVVINLPQTQKLTWLTHNLVEF-LSTGSLLIFVTKKCF- 191 (222)
Q Consensus 115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~-q~~~~~~~~~K~~~L~~~l~~~-~~~~~~IVF~nt~~~- 191 (222)
....+|.|...+-+++...|--+ .+.+.+. ....... .-.+++...+|...|...+... ....++||||+|+..
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y~l~--v~~IPt~-kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~s 441 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVYNME--VVQIPTN-RPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQS 441 (790)
T ss_pred HHhccCCCChHHHHHHHHHhCCc--EEECCCC-CCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH
Confidence 35678888865556665555222 3333322 2221122 2345567788999998887664 345699999999876
Q ss_pred -HH-HHhHHCCceEEEecCCCCCChHHHhh
Q psy17636 192 -EL-VNLIAKNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 192 -~l-~~L~~~g~~~~~lHg~~~q~~R~~~L 219 (222)
.+ ..|...|+++..|||++++++|....
T Consensus 442 e~l~~~L~~~gi~~~~L~~~~~~~e~~~i~ 471 (790)
T PRK09200 442 ETFSKLLDEAGIPHNLLNAKNAAKEAQIIA 471 (790)
T ss_pred HHHHHHHHHCCCCEEEecCCccHHHHHHHH
Confidence 88 99999999999999999988876543
No 73
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=97.96 E-value=1e-05 Score=77.98 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHh-HHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 163 TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNL-IAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 163 ~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L-~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..|..+|..+|... ...|+||||+++.. .+ ..| ...|++++.+||+|++.+|..++..|
T Consensus 478 d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 478 DPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred CHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 45788888777654 36799999999977 88 999 46799999999999999999998765
No 74
>PRK09694 helicase Cas3; Provisional
Probab=97.95 E-value=9.9e-05 Score=70.78 Aligned_cols=48 Identities=8% Similarity=-0.070 Sum_probs=37.0
Q ss_pred HHHHHHhh-CCCCeEEEEecccHH--HH-HHhHHCC---ceEEEecCCCCCChHH
Q psy17636 169 LTHNLVEF-LSTGSLLIFVTKKCF--EL-VNLIAKN---YWLIQAVGILMCPKSP 216 (222)
Q Consensus 169 L~~~l~~~-~~~~~~IVF~nt~~~--~l-~~L~~~g---~~~~~lHg~~~q~~R~ 216 (222)
+++.+.+. ...++++|||||+.+ ++ ..|+..+ .++..+||.+.+.+|.
T Consensus 549 ~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~ 603 (878)
T PRK09694 549 LLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRR 603 (878)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHH
Confidence 33444432 345789999999977 78 8888765 6899999999999994
No 75
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=97.95 E-value=3.5e-05 Score=72.35 Aligned_cols=103 Identities=8% Similarity=-0.138 Sum_probs=70.4
Q ss_pred eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--
Q psy17636 115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF-- 191 (222)
Q Consensus 115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~-- 191 (222)
....+|.|...+-.++...|- -..+.+.+.......-....+++...+|...+...+.+.. ...++||||+|+..
T Consensus 361 kl~GmTGTa~~~~~Ef~~iY~--l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se 438 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIETYS--LSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSE 438 (762)
T ss_pred hhcccCCCChhHHHHHHHHhC--CCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHH
Confidence 456788887666666765442 2223333221111111123566777889999988776643 45699999999866
Q ss_pred HH-HHhHHCCceEEEecCCCCCChHHHhh
Q psy17636 192 EL-VNLIAKNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 192 ~l-~~L~~~g~~~~~lHg~~~q~~R~~~L 219 (222)
.+ ..|...|+++..|||++++++|.-..
T Consensus 439 ~ls~~L~~~gi~~~~L~a~~~~~E~~ii~ 467 (762)
T TIGR03714 439 IYSELLLREGIPHNLLNAQNAAKEAQIIA 467 (762)
T ss_pred HHHHHHHHCCCCEEEecCCChHHHHHHHH
Confidence 78 99999999999999999988876543
No 76
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=97.81 E-value=8e-05 Score=54.31 Aligned_cols=69 Identities=28% Similarity=0.206 Sum_probs=53.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 153 ITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 153 i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
|.+.+...+ +.|...+...+.+.. ..+++||||++... .+ ..|...+..+..+||+++..+|...+..|
T Consensus 2 i~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 74 (131)
T cd00079 2 IKQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDF 74 (131)
T ss_pred cEEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHH
Confidence 445555443 368888877776654 35799999998866 77 88988899999999999999998876543
No 77
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=97.75 E-value=0.00011 Score=69.90 Aligned_cols=105 Identities=10% Similarity=-0.086 Sum_probs=72.6
Q ss_pred eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCC-CCeEEEEecccHH--
Q psy17636 115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLS-TGSLLIFVTKKCF-- 191 (222)
Q Consensus 115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~-- 191 (222)
....+|.|...+..++...|--+. +.+.+.......-..-.++....+|+..+...+.+... ..|+||||+|+..
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~l~V--v~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE 458 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYNLEV--VVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASE 458 (896)
T ss_pred hhccCCCCChhHHHHHHHHhCCCE--EECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence 345677787666666666553333 33332221111112345666778899988887766543 4599999999976
Q ss_pred HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636 192 EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL 221 (222)
Q Consensus 192 ~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~ 221 (222)
.+ ..|...|+++..|||++.+.+|+-.+..
T Consensus 459 ~ls~~L~~~gi~h~vLnak~~q~Ea~iia~A 489 (896)
T PRK13104 459 FLSQLLKKENIKHQVLNAKFHEKEAQIIAEA 489 (896)
T ss_pred HHHHHHHHcCCCeEeecCCCChHHHHHHHhC
Confidence 78 9999999999999999999999876643
No 78
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=97.63 E-value=0.00017 Score=67.54 Aligned_cols=102 Identities=9% Similarity=-0.086 Sum_probs=69.0
Q ss_pred eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCee-EEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH-
Q psy17636 115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDIT-QVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF- 191 (222)
Q Consensus 115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~-q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~- 191 (222)
....+|.|...+..++...|--+.+. +.+.. ...... .-.++....+|+..+...+.+.. ...++||||+|...
T Consensus 342 kl~GmTGTa~te~~E~~~iY~l~vv~--IPtnk-p~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~s 418 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYNLEVVV--VPTNR-PVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKS 418 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhCCCEEE--eCCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH
Confidence 45678888876666666666334333 33221 111111 22445556788888877665443 34699999999976
Q ss_pred -HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636 192 -EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL 221 (222)
Q Consensus 192 -~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~ 221 (222)
.+ ..|...|+++..|||+ |.+|+..+-.
T Consensus 419 e~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~ 448 (745)
T TIGR00963 419 ELLSNLLKERGIPHNVLNAK--NHEREAEIIA 448 (745)
T ss_pred HHHHHHHHHcCCCeEEeeCC--hHHHHHHHHH
Confidence 78 9999999999999999 8889887643
No 79
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=97.63 E-value=0.00017 Score=68.37 Aligned_cols=102 Identities=10% Similarity=-0.070 Sum_probs=70.2
Q ss_pred eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCee-EEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH-
Q psy17636 115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDIT-QVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF- 191 (222)
Q Consensus 115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~-q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~- 191 (222)
....+|.|...+..++...|--+.+. +.+. ....... .-.++....+|+..+...+.+.. ...++||||+|+..
T Consensus 367 kl~GmTGTa~te~~E~~~iY~l~vv~--IPtn-kp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~s 443 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIYNLDVVV--IPTN-RPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKS 443 (830)
T ss_pred hhcccCCCcHHHHHHHHHHhCCCEEE--cCCC-CCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH
Confidence 45678888876666666666333333 3322 1111122 23455566889999988876633 34699999999976
Q ss_pred -HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636 192 -EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL 221 (222)
Q Consensus 192 -~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~ 221 (222)
.+ ..|...|+++..|||+ |.+|+..+-.
T Consensus 444 e~Ls~~L~~~gi~~~vLnak--q~eREa~Iia 473 (830)
T PRK12904 444 ELLSKLLKKAGIPHNVLNAK--NHEREAEIIA 473 (830)
T ss_pred HHHHHHHHHCCCceEeccCc--hHHHHHHHHH
Confidence 78 9999999999999996 8889887643
No 80
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=97.50 E-value=0.00028 Score=66.66 Aligned_cols=101 Identities=9% Similarity=-0.114 Sum_probs=67.3
Q ss_pred eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--
Q psy17636 115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF-- 191 (222)
Q Consensus 115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~-- 191 (222)
....+|.|...+-.++...|--+ .+.+.+.......-..-.++.+..+|...+...+.... ...++||||+|+..
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~l~--vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se 454 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYNME--VITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSE 454 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhCCC--EEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence 45678888876666665555333 23333321111111123455566789998888776543 34699999999976
Q ss_pred HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636 192 EL-VNLIAKNYWLIQAVGILMCPKSPS 217 (222)
Q Consensus 192 ~l-~~L~~~g~~~~~lHg~~~q~~R~~ 217 (222)
.+ ..|...|+++..|||++.+++|+-
T Consensus 455 ~ls~~L~~~gi~~~~Lna~~~~~Ea~i 481 (796)
T PRK12906 455 RLSHLLDEAGIPHAVLNAKNHAKEAEI 481 (796)
T ss_pred HHHHHHHHCCCCeeEecCCcHHHHHHH
Confidence 88 999999999999999988665543
No 81
>KOG0352|consensus
Probab=97.45 E-value=0.00021 Score=62.34 Aligned_cols=103 Identities=14% Similarity=0.040 Sum_probs=64.4
Q ss_pred CCeEEEEccccchHHHHHHH--HhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHHHhhCC-----------
Q psy17636 113 NRQTLLFSATFKKRIEKLAR--DVLTDPIKIVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNLVEFLS----------- 178 (222)
Q Consensus 113 ~~Q~~lfSAT~~~~v~~l~~--~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~~~----------- 178 (222)
+.--+.++||.+.+|++-+. ..+++|+-+--.+.-. .|+-.....-+. .+-+..|..+-...++
T Consensus 176 ~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR--~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~ 253 (641)
T KOG0352|consen 176 GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFR--DNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKT 253 (641)
T ss_pred CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchh--hhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCC
Confidence 34578899999999988443 4466888764332211 111100000011 2333334333333222
Q ss_pred -CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636 179 -TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPS 217 (222)
Q Consensus 179 -~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~ 217 (222)
.+-.||||.||.. .+ -.|...|+.+.++|.+|...+|-.
T Consensus 254 ~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTe 296 (641)
T KOG0352|consen 254 FTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTE 296 (641)
T ss_pred cCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHH
Confidence 2358999999966 88 899999999999999999999864
No 82
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=97.39 E-value=0.00058 Score=65.06 Aligned_cols=104 Identities=6% Similarity=-0.099 Sum_probs=70.7
Q ss_pred eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCee-EEEEEcCCCchHHHHHHHHHhhCC-CCeEEEEecccHH-
Q psy17636 115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDIT-QVVINLPQTQKLTWLTHNLVEFLS-TGSLLIFVTKKCF- 191 (222)
Q Consensus 115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~-q~~~~~~~~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~- 191 (222)
....+|.|...+..++...|--+.+. +.+.. ...... .-.++....+|+..+.+.+.+... ..++||||+|...
T Consensus 386 kL~GMTGTa~te~~Ef~~iY~l~Vv~--IPTnk-p~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~s 462 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIYGLDTVV--VPTNR-PMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQS 462 (908)
T ss_pred HhhcccCCChHHHHHHHHHhCCCEEE--CCCCC-CccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHH
Confidence 34567778766666666655333333 33221 111122 224455668899888877766543 3599999999876
Q ss_pred -HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636 192 -EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL 221 (222)
Q Consensus 192 -~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~ 221 (222)
.+ ..|...|+++..|||++++.+|+-.+..
T Consensus 463 e~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~A 494 (908)
T PRK13107 463 ELLARLMVKEKIPHEVLNAKFHEREAEIVAQA 494 (908)
T ss_pred HHHHHHHHHCCCCeEeccCcccHHHHHHHHhC
Confidence 78 9999999999999999999999876543
No 83
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.30 E-value=0.00064 Score=65.23 Aligned_cols=102 Identities=9% Similarity=-0.062 Sum_probs=67.4
Q ss_pred eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--
Q psy17636 115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF-- 191 (222)
Q Consensus 115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~-- 191 (222)
....++.|...+..++...|--+.+. +.+.......-..-.++....+|...|...+.... ...++||||+|+..
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~L~Vv~--IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE 612 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYKLDVVV--IPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSE 612 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhCCcEEE--CCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHH
Confidence 34556777766666665555223332 33222111111223455666889999988886543 34699999999866
Q ss_pred HH-HHhHHCCceEEEecCCCCCChHHHhhc
Q psy17636 192 EL-VNLIAKNYWLIQAVGILMCPKSPSRLS 220 (222)
Q Consensus 192 ~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~ 220 (222)
.| ..|...|+++..||+ .|.+|+..+-
T Consensus 613 ~Ls~~L~~~gI~h~vLna--kq~~REa~Ii 640 (1025)
T PRK12900 613 TLSRMLRAKRIAHNVLNA--KQHDREAEIV 640 (1025)
T ss_pred HHHHHHHHcCCCceeecC--CHHHhHHHHH
Confidence 78 999999999999998 5778887653
No 84
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=97.29 E-value=0.00035 Score=65.45 Aligned_cols=60 Identities=8% Similarity=-0.041 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHhhCC-CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 163 TQKLTWLTHNLVEFLS-TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 163 ~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..+...|+..|..... ..++||||+|+.. .+ ..|...|+++..+||+|++.+|..++..|
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f 492 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDL 492 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHH
Confidence 4556677777776543 4689999999866 88 99999999999999999999999887654
No 85
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=97.26 E-value=0.00039 Score=64.97 Aligned_cols=60 Identities=8% Similarity=-0.034 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 163 TQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 163 ~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..+...|+..+.... ...++||||+|+.. .+ ..|...|+++..+||+|++.+|...+..|
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~f 488 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDL 488 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHH
Confidence 556677777777654 34699999999866 88 99999999999999999999999887653
No 86
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=97.13 E-value=0.0017 Score=61.74 Aligned_cols=107 Identities=15% Similarity=0.101 Sum_probs=68.1
Q ss_pred CCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCC---CCCCCeeEEEE-EcCCCchHHHHHHHH-HhhCCCCeEEEEec
Q psy17636 113 NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIG---EANTDITQVVI-NLPQTQKLTWLTHNL-VEFLSTGSLLIFVT 187 (222)
Q Consensus 113 ~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~---~~~~~i~q~~~-~~~~~~K~~~L~~~l-~~~~~~~~~IVF~n 187 (222)
+.-++++|||+|+..++.....+.+...+...... .....+.+... .+..... ..+.... ......++++|=||
T Consensus 370 g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~kvlvI~N 448 (733)
T COG1203 370 GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQ-EELIELISEEVKEGKKVLVIVN 448 (733)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhh-HhhhhcchhhhccCCcEEEEEe
Confidence 67799999999999999888887765554332110 00111111111 1111100 0111222 22234579999999
Q ss_pred ccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhc
Q psy17636 188 KKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLS 220 (222)
Q Consensus 188 t~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~ 220 (222)
|... ++ ..|+..+-++..|||.+....|+....
T Consensus 449 TV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~ 484 (733)
T COG1203 449 TVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKER 484 (733)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHH
Confidence 9876 88 999998888999999999999998765
No 87
>PRK13766 Hef nuclease; Provisional
Probab=96.80 E-value=0.0023 Score=61.18 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=49.8
Q ss_pred CchHHHHHHHHHhhC---CCCeEEEEecccHH--HH-HHhHHCCceEEEecCC--------CCCChHHHhhcCC
Q psy17636 163 TQKLTWLTHNLVEFL---STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGI--------LMCPKSPSRLSLV 222 (222)
Q Consensus 163 ~~K~~~L~~~l~~~~---~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~--------~~q~~R~~~L~~~ 222 (222)
..|+..|.++|.+.. +.+++||||+++.. .| ..|...|+++..+||. |++.+|...+..|
T Consensus 346 ~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F 419 (773)
T PRK13766 346 HPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKF 419 (773)
T ss_pred ChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHH
Confidence 568888888776643 45799999999876 88 9999999999999997 9999998887654
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.57 E-value=0.018 Score=52.45 Aligned_cols=31 Identities=10% Similarity=-0.009 Sum_probs=23.7
Q ss_pred HH-HHhHHC--CceEEEecCCCCCChH--HHhhcCC
Q psy17636 192 EL-VNLIAK--NYWLIQAVGILMCPKS--PSRLSLV 222 (222)
Q Consensus 192 ~l-~~L~~~--g~~~~~lHg~~~q~~R--~~~L~~~ 222 (222)
.+ +.|++. +.++..+|||+++.++ +..|..|
T Consensus 273 ~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f 308 (505)
T TIGR00595 273 QVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQF 308 (505)
T ss_pred HHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHH
Confidence 56 677665 8899999999998877 6666543
No 89
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=96.53 E-value=0.034 Score=49.53 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=74.4
Q ss_pred CeEEEEccccchHHHHHHHHhcCCC---cEEEeCCC-----CCCCCCeeEEEEEcCCC-------chHHHHHHHHHh-h-
Q psy17636 114 RQTLLFSATFKKRIEKLARDVLTDP---IKIVQGDI-----GEANTDITQVVINLPQT-------QKLTWLTHNLVE-F- 176 (222)
Q Consensus 114 ~Q~~lfSAT~~~~v~~l~~~~l~~p---~~i~v~~~-----~~~~~~i~q~~~~~~~~-------~K~~~L~~~l~~-~- 176 (222)
|||++||+..++++..+....+.|. +.+..... ......|+|.+..++.. .++.+....+.. .
T Consensus 216 RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~ 295 (442)
T PF06862_consen 216 RQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLK 295 (442)
T ss_pred eEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhh
Confidence 8999999999999999999977653 22222222 24566788998875532 344444332222 1
Q ss_pred --CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHh
Q psy17636 177 --LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSR 218 (222)
Q Consensus 177 --~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~ 218 (222)
...+.+|||+.+=-+ .| ++|++.+++.+++|---++.+-.++
T Consensus 296 ~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRA 342 (442)
T PF06862_consen 296 RDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRA 342 (442)
T ss_pred hccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHH
Confidence 134689999999888 88 9999999999999988777774433
No 90
>COG1204 Superfamily II helicase [General function prediction only]
Probab=96.51 E-value=0.038 Score=52.77 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHhHHHH-HhCCCCCC
Q psy17636 63 FGFDEVLMKALRKCEYTSPTPIQAQAVPA-ALSGRDII 99 (222)
Q Consensus 63 l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~-il~g~dvi 99 (222)
..+++.+.+.++..|+.+..|-|+.++.. +.+|+|++
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~l 51 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVL 51 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEE
Confidence 44788888888888997777666666555 55669988
No 91
>KOG0951|consensus
Probab=96.40 E-value=0.039 Score=54.38 Aligned_cols=104 Identities=15% Similarity=0.078 Sum_probs=60.5
Q ss_pred CCeEEEEccccchHHHHHHHHhcCCC-cEEEeCCCCCCCCCeeEEEEEcCCC--chH-H----HHHHHHHhhCCCCeEEE
Q psy17636 113 NRQTLLFSATFKKRIEKLARDVLTDP-IKIVQGDIGEANTDITQVVINLPQT--QKL-T----WLTHNLVEFLSTGSLLI 184 (222)
Q Consensus 113 ~~Q~~lfSAT~~~~v~~l~~~~l~~p-~~i~v~~~~~~~~~i~q~~~~~~~~--~K~-~----~L~~~l~~~~~~~~~IV 184 (222)
....+.+|||+|.- +..+....-++ -....++.-. +--++|.|+-+... .|. . ..++.+.+..+.+++||
T Consensus 474 ~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~syR-pvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLV 551 (1674)
T KOG0951|consen 474 GSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDSSYR-PVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLV 551 (1674)
T ss_pred CceeeeecccCCch-hhhHHHhccCcccccccCcccC-cCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEE
Confidence 57889999999864 23332111232 2222222222 34588888877653 332 1 22233334445689999
Q ss_pred EecccHH--HH-HHhH--------------HC-----------------------CceEEEecCCCCCChHHHh
Q psy17636 185 FVTKKCF--EL-VNLI--------------AK-----------------------NYWLIQAVGILMCPKSPSR 218 (222)
Q Consensus 185 F~nt~~~--~l-~~L~--------------~~-----------------------g~~~~~lHg~~~q~~R~~~ 218 (222)
||.+|++ +. ..++ +. -+.++..|+||+..+|...
T Consensus 552 FVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~ 625 (1674)
T KOG0951|consen 552 FVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELV 625 (1674)
T ss_pred EEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHH
Confidence 9998855 22 2222 11 2567889999999999754
No 92
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=95.99 E-value=0.013 Score=44.67 Aligned_cols=30 Identities=37% Similarity=0.532 Sum_probs=19.4
Q ss_pred HHHHHHHhhCC--CCCeEEEEccccchHHHHH
Q psy17636 101 PQVRSICDHVR--PNRQTLLFSATFKKRIEKL 130 (222)
Q Consensus 101 ~~l~~Il~~~~--~~~Q~~lfSAT~~~~v~~l 130 (222)
..+..|++.+. .+.|++++|||+++.++++
T Consensus 138 ~~~~~i~~~~~~~~~~~~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 138 AMLKSILRRLKRFKNIQIILLSATLPSNVEKL 169 (169)
T ss_dssp HHHHHHHHHSHTTTTSEEEEEESSSTHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcEEEEeeCCChhHhhC
Confidence 35666666652 2577888888888666653
No 93
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.71 E-value=0.1 Score=49.38 Aligned_cols=31 Identities=10% Similarity=-0.071 Sum_probs=23.1
Q ss_pred HH-HHhHHC--CceEEEecCCCCC--ChHHHhhcCC
Q psy17636 192 EL-VNLIAK--NYWLIQAVGILMC--PKSPSRLSLV 222 (222)
Q Consensus 192 ~l-~~L~~~--g~~~~~lHg~~~q--~~R~~~L~~~ 222 (222)
.+ +.|++. |.++..+|||+.+ .+|++.|..|
T Consensus 441 ~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f 476 (679)
T PRK05580 441 RLEEELAELFPEARILRIDRDTTRRKGALEQLLAQF 476 (679)
T ss_pred HHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHH
Confidence 45 666665 8899999999975 4677777654
No 94
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.65 E-value=0.23 Score=47.86 Aligned_cols=123 Identities=14% Similarity=0.162 Sum_probs=78.5
Q ss_pred HHhCCCCCC---------------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeE
Q psy17636 91 AALSGRDII---------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQ 155 (222)
Q Consensus 91 ~il~g~dvi---------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q 155 (222)
..|+|-++| ..-+.+++...+++-.+++.|||+..+ +++ .++.++-.+.+.... - -|+-
T Consensus 158 ~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~--rfs-~~f~~apvi~i~GR~--f-PVei 231 (845)
T COG1643 158 PLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAE--RFS-AYFGNAPVIEIEGRT--Y-PVEI 231 (845)
T ss_pred cccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHH--HHH-HHcCCCCEEEecCCc--c-ceEE
Confidence 356777766 566777777777788999999999643 454 455655445554332 1 2455
Q ss_pred EEEEcCC-Cch-HHHHHHHHHhhC--CCCeEEEEecccHH--HH-HHhHH----CCceEEEecCCCCCChHHHhh
Q psy17636 156 VVINLPQ-TQK-LTWLTHNLVEFL--STGSLLIFVTKKCF--EL-VNLIA----KNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 156 ~~~~~~~-~~K-~~~L~~~l~~~~--~~~~~IVF~nt~~~--~l-~~L~~----~g~~~~~lHg~~~q~~R~~~L 219 (222)
+|..... .++ ...+...+.... ..|.++||.+-..+ .+ ..|.+ ....+..|||.|+.++-.+.+
T Consensus 232 ~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF 306 (845)
T COG1643 232 RYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVF 306 (845)
T ss_pred EecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhc
Confidence 5533332 332 223333333222 45899999998877 66 77776 458899999999988766654
No 95
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=95.40 E-value=0.021 Score=56.04 Aligned_cols=62 Identities=16% Similarity=0.166 Sum_probs=49.3
Q ss_pred CCCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 161 PQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 161 ~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
....|+..|..+|.... ...++|||+..... .| .+|...|++...|||+++..+|..++..|
T Consensus 468 e~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~F 533 (1033)
T PLN03142 468 ENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAF 533 (1033)
T ss_pred hhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHh
Confidence 34578877766665543 34699999986655 67 89999999999999999999999988765
No 96
>KOG0950|consensus
Probab=95.12 E-value=0.1 Score=50.13 Aligned_cols=36 Identities=17% Similarity=0.078 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHhHH--HHHhCCCCCC
Q psy17636 64 GFDEVLMKALRKCEYTSPTPIQAQAV--PAALSGRDII 99 (222)
Q Consensus 64 ~l~~~l~~~l~~~g~~~pTpIQ~~~i--p~il~g~dvi 99 (222)
+++....-..+..|.......|..|+ |.+++|+++|
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nli 244 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLI 244 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceE
Confidence 33444444556679999999999986 7788999998
No 97
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.69 E-value=0.033 Score=52.68 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=38.1
Q ss_pred CchHHHHHHHHHhh-CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 163 TQKLTWLTHNLVEF-LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 163 ~~K~~~L~~~l~~~-~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..|...+..++... ....++||||++... .+ ..| | +..+||++++.+|...|..|
T Consensus 479 p~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~F 537 (732)
T TIGR00603 479 PNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNF 537 (732)
T ss_pred hHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHH
Confidence 34555554444322 245699999988755 55 555 3 46699999999999998765
No 98
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.44 E-value=0.14 Score=46.49 Aligned_cols=102 Identities=12% Similarity=-0.013 Sum_probs=63.1
Q ss_pred CCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhh-CCCCeEEEEecccHH
Q psy17636 113 NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEF-LSTGSLLIFVTKKCF 191 (222)
Q Consensus 113 ~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~~~IVF~nt~~~ 191 (222)
..|++..|||=.+.-.+.+. ++-+.--+.+.+...+ .+.+-+.....+-|+.-+... ..+.+++|=+-|++-
T Consensus 386 ~~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGLlDP----~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG---GNVVEQIIRPTGLLDP----EIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHhcc---CceeEEeecCCCCCCC----ceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 36999999996443222211 0111111222222222 222233334444455656553 345799999988754
Q ss_pred --HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636 192 --EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL 221 (222)
Q Consensus 192 --~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~ 221 (222)
.| .+|...|+++..+|++..--+|...+.+
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIird 491 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRD 491 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHH
Confidence 89 9999999999999999999999887754
No 99
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=94.14 E-value=0.28 Score=37.47 Aligned_cols=46 Identities=35% Similarity=0.371 Sum_probs=37.6
Q ss_pred HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCC
Q psy17636 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGD 145 (222)
Q Consensus 100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~ 145 (222)
...+..++..+++..+.+++|||.++.+...+..++.+.+.+....
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 147 GDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HHHHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 3566667777777899999999999999999999999888776654
No 100
>KOG0952|consensus
Probab=94.13 E-value=0.41 Score=46.73 Aligned_cols=96 Identities=22% Similarity=0.225 Sum_probs=49.6
Q ss_pred HHHHHHHHhhCC-------CCCeEEEEccccchHHHHHHHHhcC-CC-cEEEeCCCCCCCCCeeEEEEEcCCC---chHH
Q psy17636 100 EPQVRSICDHVR-------PNRQTLLFSATFKKRIEKLARDVLT-DP-IKIVQGDIGEANTDITQVVINLPQT---QKLT 167 (222)
Q Consensus 100 ~~~l~~Il~~~~-------~~~Q~~lfSAT~~~~v~~l~~~~l~-~p-~~i~v~~~~~~~~~i~q~~~~~~~~---~K~~ 167 (222)
++.++.|+..+. ....++.+|||+|.- +.+|. |++ || .-+.--...--+-.++|.++-++.. .+..
T Consensus 255 GpvlEtiVaRtlr~vessqs~IRivgLSATlPN~-eDvA~-fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~ 332 (1230)
T KOG0952|consen 255 GPVLETIVARTLRLVESSQSMIRIVGLSATLPNY-EDVAR-FLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKK 332 (1230)
T ss_pred cchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHH-HhcCCCccceeeecccccccceeeeEEeeecccchhhhh
Confidence 455555554432 345789999999864 45543 444 32 1111111112244577777766543 1111
Q ss_pred H----HHHHHHh-hCCCCeEEEEecccHH--HH-HHhH
Q psy17636 168 W----LTHNLVE-FLSTGSLLIFVTKKCF--EL-VNLI 197 (222)
Q Consensus 168 ~----L~~~l~~-~~~~~~~IVF~nt~~~--~l-~~L~ 197 (222)
. .+..+.+ .....+++|||.++.+ .. +.|.
T Consensus 333 ~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~ 370 (1230)
T KOG0952|consen 333 NIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLR 370 (1230)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHH
Confidence 1 1111222 2245699999999866 44 4443
No 101
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=94.06 E-value=0.019 Score=38.02 Aligned_cols=29 Identities=14% Similarity=-0.069 Sum_probs=25.8
Q ss_pred HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 194 VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 194 ~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
++|+..|+++..+||+|++.+|...+..|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f 29 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKF 29 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHH
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHh
Confidence 46889999999999999999999988654
No 102
>KOG0390|consensus
Probab=93.06 E-value=0.2 Score=47.52 Aligned_cols=58 Identities=16% Similarity=0.055 Sum_probs=39.7
Q ss_pred CchHHHHHHHHHhhCCCCeEEEEe----cccHH-HH--HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 163 TQKLTWLTHNLVEFLSTGSLLIFV----TKKCF-EL--VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 163 ~~K~~~L~~~l~~~~~~~~~IVF~----nt~~~-~l--~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..|+..|..+|... ..++.+|+ |-+.. .+ ...+-.|+.+..|||+|++.||.+...-|
T Consensus 577 s~kl~~L~~ll~~~--~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~F 641 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVI--REKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTF 641 (776)
T ss_pred hhHHHHHHHHHHHH--hhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhc
Confidence 45666665555333 34666666 34444 44 55566699999999999999999877654
No 103
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=92.98 E-value=0.18 Score=45.30 Aligned_cols=60 Identities=15% Similarity=0.062 Sum_probs=45.1
Q ss_pred CchHHHHHHHHHhhC---CCCeEEEEecccHH--HH-HHhHHCCceEE-Eec--------CCCCCChHHHhhcCC
Q psy17636 163 TQKLTWLTHNLVEFL---STGSLLIFVTKKCF--EL-VNLIAKNYWLI-QAV--------GILMCPKSPSRLSLV 222 (222)
Q Consensus 163 ~~K~~~L~~~l~~~~---~~~~~IVF~nt~~~--~l-~~L~~~g~~~~-~lH--------g~~~q~~R~~~L~~~ 222 (222)
+-|+..|.+++.+.. +..++|||++.|.+ .+ .+|...|.++. .+- .||+|.+-...+..|
T Consensus 347 HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~F 421 (542)
T COG1111 347 HPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQF 421 (542)
T ss_pred CccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHH
Confidence 668888888777665 33699999999977 77 99999998874 332 469888877666544
No 104
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=92.92 E-value=0.071 Score=34.93 Aligned_cols=30 Identities=17% Similarity=-0.034 Sum_probs=26.0
Q ss_pred H-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 193 L-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 193 l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
+ ..|...|+.+..+||+|+.++|...+..|
T Consensus 3 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 33 (82)
T smart00490 3 LAELLKELGIKVARLHGGLSQEEREEILEKF 33 (82)
T ss_pred HHHHHHHCCCeEEEEECCCCHHHHHHHHHHH
Confidence 5 67888899999999999999999887654
No 105
>KOG0922|consensus
Probab=92.15 E-value=2.5 Score=39.44 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=64.8
Q ss_pred HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchH-HHHHHH--HHhh
Q psy17636 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKL-TWLTHN--LVEF 176 (222)
Q Consensus 100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~-~~L~~~--l~~~ 176 (222)
..-+++|++. +++-.+++.|||+.. +....|+.+.-.+.+..... -|+..|..-+..+=. +.+... +...
T Consensus 183 lGlLKki~~~-R~~LklIimSATlda---~kfS~yF~~a~i~~i~GR~f---PVei~y~~~p~~dYv~a~~~tv~~Ih~~ 255 (674)
T KOG0922|consen 183 LGLLKKILKK-RPDLKLIIMSATLDA---EKFSEYFNNAPILTIPGRTF---PVEILYLKEPTADYVDAALITVIQIHLT 255 (674)
T ss_pred HHHHHHHHhc-CCCceEEEEeeeecH---HHHHHHhcCCceEeecCCCC---ceeEEeccCCchhhHHHHHHHHHHHHcc
Confidence 4555555554 446789999999973 33455677655556654322 244444443332211 122111 2222
Q ss_pred CCCCeEEEEecccHH--HH-HHhHHC----Cce----EEEecCCCCCChHHHhh
Q psy17636 177 LSTGSLLIFVTKKCF--EL-VNLIAK----NYW----LIQAVGILMCPKSPSRL 219 (222)
Q Consensus 177 ~~~~~~IVF~nt~~~--~l-~~L~~~----g~~----~~~lHg~~~q~~R~~~L 219 (222)
.+++-++||.+...+ .+ +.|.+. +-. ...+||.|+.++-.+.+
T Consensus 256 E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF 309 (674)
T KOG0922|consen 256 EPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVF 309 (674)
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccc
Confidence 456789999998876 44 444432 222 46799999998866554
No 106
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.12 E-value=0.27 Score=47.79 Aligned_cols=90 Identities=19% Similarity=0.065 Sum_probs=60.8
Q ss_pred CCCeEEEEccccchH-HHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEeccc-
Q psy17636 112 PNRQTLLFSATFKKR-IEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK- 189 (222)
Q Consensus 112 ~~~Q~~lfSAT~~~~-v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~- 189 (222)
+..+.+.-|||..+. .+-..- ++-.-+.++.......||...|+..+..+|.. +++... ..-+|||+...
T Consensus 275 k~g~LvvsSATg~~rg~R~~Lf---ReLlgFevG~~~~~LRNIvD~y~~~~~~e~~~---elvk~l--G~GgLIfV~~d~ 346 (1187)
T COG1110 275 KLGILVVSSATGKPRGSRLKLF---RELLGFEVGSGGEGLRNIVDIYVESESLEKVV---ELVKKL--GDGGLIFVPIDY 346 (1187)
T ss_pred CCceEEEeeccCCCCCchHHHH---HHHhCCccCccchhhhheeeeeccCccHHHHH---HHHHHh--CCCeEEEEEcHH
Confidence 457899999999543 322222 22222355666667788988888775555554 434443 24789999983
Q ss_pred --H--HHH-HHhHHCCceEEEecCC
Q psy17636 190 --C--FEL-VNLIAKNYWLIQAVGI 209 (222)
Q Consensus 190 --~--~~l-~~L~~~g~~~~~lHg~ 209 (222)
. +++ ++|+.+|+++..+|+.
T Consensus 347 G~e~aeel~e~Lr~~Gi~a~~~~a~ 371 (1187)
T COG1110 347 GREKAEELAEYLRSHGINAELIHAE 371 (1187)
T ss_pred hHHHHHHHHHHHHhcCceEEEeecc
Confidence 2 289 9999999999999984
No 107
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=91.41 E-value=0.57 Score=31.83 Aligned_cols=35 Identities=6% Similarity=-0.016 Sum_probs=27.4
Q ss_pred CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCC
Q psy17636 177 LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 177 ~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~ 211 (222)
.+..++++||++-.. .. ..|+..|+++..|.|+++
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 334689999986433 55 888999999999999985
No 108
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=91.15 E-value=0.82 Score=44.14 Aligned_cols=98 Identities=10% Similarity=-0.115 Sum_probs=63.4
Q ss_pred eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCee-EEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH-
Q psy17636 115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDIT-QVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF- 191 (222)
Q Consensus 115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~-q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~- 191 (222)
....+|.|...+-.++...|--+.+ .+.+. ....... .-.++....+|+..+...+.+.. ...|+||.|.|...
T Consensus 363 kLsGMTGTA~te~~Ef~~iY~l~Vv--~IPTn-kP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~S 439 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIYNMRVN--VVPTN-KPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDS 439 (925)
T ss_pred hhhccCCCCHHHHHHHHHHhCCCEE--ECCCC-CCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH
Confidence 4556778876666666655533333 33222 1111111 12456667889988888777654 34599999999866
Q ss_pred -HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636 192 -EL-VNLIAKNYWLIQAVGILMCPKSPS 217 (222)
Q Consensus 192 -~l-~~L~~~g~~~~~lHg~~~q~~R~~ 217 (222)
.+ ..|...|++...|++. +.+|+.
T Consensus 440 E~ls~~L~~~gi~h~vLNAk--~~e~EA 465 (925)
T PRK12903 440 ETLHELLLEANIPHTVLNAK--QNAREA 465 (925)
T ss_pred HHHHHHHHHCCCCceeeccc--chhhHH
Confidence 77 9999999999999885 445554
No 109
>KOG1002|consensus
Probab=90.60 E-value=0.2 Score=45.21 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=45.0
Q ss_pred CchHHHHHHHHHhh---CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 163 TQKLTWLTHNLVEF---LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 163 ~~K~~~L~~~l~~~---~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
+.|.++|.+-|... ...-+.|||..-..- -+ -.|.+.|++|+-|-|+|+..+|..++..|
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F 684 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYF 684 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHh
Confidence 56777776655433 223489999753322 55 78999999999999999999999988654
No 110
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=90.44 E-value=2.3 Score=42.20 Aligned_cols=130 Identities=17% Similarity=0.143 Sum_probs=85.4
Q ss_pred HHHHhHHHHHhCCC-CCC-------------------------------HHHHHHHHhhCCCCCeEEEEccccchHHHHH
Q psy17636 83 PIQAQAVPAALSGR-DII-------------------------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKL 130 (222)
Q Consensus 83 pIQ~~~ip~il~g~-dvi-------------------------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l 130 (222)
.-|.+++..+-+|+ |+| .+.+++ ++.+.-++-+|||==+..-.+
T Consensus 684 kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk~KEkLK~----Lr~~VDvLTLSATPIPRTL~M 759 (1139)
T COG1197 684 KEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKEKLKE----LRANVDVLTLSATPIPRTLNM 759 (1139)
T ss_pred HHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhhcCccHHHHHHH----HhccCcEEEeeCCCCcchHHH
Confidence 35677777788887 777 444444 456677999999975666677
Q ss_pred HHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHH-HHhhCCCCeEEEEecccHH--HH-HHhHHC--CceEE
Q psy17636 131 ARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHN-LVEFLSTGSLLIFVTKKCF--EL-VNLIAK--NYWLI 204 (222)
Q Consensus 131 ~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~-l~~~~~~~~~IVF~nt~~~--~l-~~L~~~--g~~~~ 204 (222)
+-.-+++--.|...+.+.. .|+-++. +.++.. +.+. +.+....|++..-+|..++ .+ ..|+.. ..+++
T Consensus 760 sm~GiRdlSvI~TPP~~R~--pV~T~V~--~~d~~~--ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~ 833 (1139)
T COG1197 760 SLSGIRDLSVIATPPEDRL--PVKTFVS--EYDDLL--IREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIA 833 (1139)
T ss_pred HHhcchhhhhccCCCCCCc--ceEEEEe--cCChHH--HHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEE
Confidence 7777788777765544322 2333322 222221 2222 3344456788777788877 77 888776 67899
Q ss_pred EecCCCCCChHHHhhcCC
Q psy17636 205 QAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 205 ~lHg~~~q~~R~~~L~~~ 222 (222)
..||.|+..+=++.+..|
T Consensus 834 vaHGQM~e~eLE~vM~~F 851 (1139)
T COG1197 834 VAHGQMRERELEEVMLDF 851 (1139)
T ss_pred EeecCCCHHHHHHHHHHH
Confidence 999999999888877655
No 111
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=89.82 E-value=0.49 Score=42.43 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=37.7
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..+++|||.+... .+ ..+...|+ +..+.|+.++.+|+..++.|
T Consensus 283 ~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~f 328 (442)
T COG1061 283 GDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERF 328 (442)
T ss_pred CCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHH
Confidence 4699999988866 78 88888888 99999999999999998765
No 112
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=89.80 E-value=1.7 Score=41.32 Aligned_cols=93 Identities=12% Similarity=-0.076 Sum_probs=62.3
Q ss_pred eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--
Q psy17636 115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF-- 191 (222)
Q Consensus 115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~-- 191 (222)
....+|.|.....+++...|--+ .+.+.+.......-....++....+|+..+...+.+.. ...|+||.|.|...
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY~l~--Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE 441 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFYDLG--VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESE 441 (764)
T ss_pred hheeecCCChhHHHHHHHHhCCc--EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHH
Confidence 46788899877777776666434 23333221111111123455566788888877776654 34599999999876
Q ss_pred HH-HHhHHCCceEEEecCC
Q psy17636 192 EL-VNLIAKNYWLIQAVGI 209 (222)
Q Consensus 192 ~l-~~L~~~g~~~~~lHg~ 209 (222)
.+ ..|.+.|++...|++.
T Consensus 442 ~ls~~L~~~gI~h~vLNAk 460 (764)
T PRK12326 442 ELAERLRAAGVPAVVLNAK 460 (764)
T ss_pred HHHHHHHhCCCcceeeccC
Confidence 77 9999999999999886
No 113
>KOG4150|consensus
Probab=89.52 E-value=8.1 Score=35.89 Aligned_cols=152 Identities=16% Similarity=0.110 Sum_probs=95.9
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------HHHHHHHHhhC-----CC
Q psy17636 64 GFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------EPQVRSICDHV-----RP 112 (222)
Q Consensus 64 ~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------~~~l~~Il~~~-----~~ 112 (222)
++.+.--+++.+.|-.....-|..++..+|...-.. .++++.+++.+ ..
T Consensus 371 ~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~ 450 (1034)
T KOG4150|consen 371 KLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASI 450 (1034)
T ss_pred CCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhc
Confidence 577778888998887777777888887777553222 56666666655 34
Q ss_pred CCeEEEEccccchHHHHHHHHhcC-CCcEEEeCCCCCCCCCeeEEEEEcCC------CchHH---HHHHHHHhh-CCCCe
Q psy17636 113 NRQTLLFSATFKKRIEKLARDVLT-DPIKIVQGDIGEANTDITQVVINLPQ------TQKLT---WLTHNLVEF-LSTGS 181 (222)
Q Consensus 113 ~~Q~~lfSAT~~~~v~~l~~~~l~-~p~~i~v~~~~~~~~~i~q~~~~~~~------~~K~~---~L~~~l~~~-~~~~~ 181 (222)
+-|++-.|||+-+.++-+...+-- +...|... ..+..-++.+++-++ ++|.. ....++.+. ...-+
T Consensus 451 ~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~D---GSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R 527 (1034)
T KOG4150|consen 451 NMGVYDGDTPYKDRTRLRSELANLSELELVTID---GSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLR 527 (1034)
T ss_pred CcceEeCCCCcCCHHHHHHHhcCCcceEEEEec---CCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCc
Confidence 789999999999888877666533 33344332 345566777777653 12222 222222222 23459
Q ss_pred EEEEecccHH-H-----H-HHhHHCCc----eEEEecCCCCCChHHHh
Q psy17636 182 LLIFVTKKCF-E-----L-VNLIAKNY----WLIQAVGILMCPKSPSR 218 (222)
Q Consensus 182 ~IVF~nt~~~-~-----l-~~L~~~g~----~~~~lHg~~~q~~R~~~ 218 (222)
+|-||.+|.- + . +.|..-|- .+.++.|+-+.++|-+.
T Consensus 528 ~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKI 575 (1034)
T KOG4150|consen 528 CIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKI 575 (1034)
T ss_pred EEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHH
Confidence 9999987743 2 2 33333332 45677888888888664
No 114
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=87.90 E-value=0.3 Score=47.39 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=48.7
Q ss_pred hhhhcCCHHHHHHHHHHcCCEE-ecCCCCCCCCCcCCCCCCHHHHHHHH-----HCCCCCC---CHHHHhHHHHHhCCCC
Q psy17636 27 EDIARLTPQEAQELRAKSGITV-SGADPPYPVSSFGHFGFDEVLMKALR-----KCEYTSP---TPIQAQAVPAALSGRD 97 (222)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~i~v-~g~~~p~~~~~f~~l~l~~~l~~~l~-----~~g~~~p---TpIQ~~~ip~il~g~d 97 (222)
..+.++++++.......+.-.+ .|...... --+.|++..++...+. .+||..| ||+|.++||.++.|+|
T Consensus 32 ~~~~~lsd~eL~~kt~~~k~~l~~~~~ld~~--l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~g 109 (970)
T PRK12899 32 EKFSSLSDDELRNKTAELKQRYQDGESLDKL--LPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKG 109 (970)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHcCCchHHH--HHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCC
Confidence 4567788876654333321111 23221111 1255789999998887 6899999 9999999999999999
Q ss_pred CC
Q psy17636 98 II 99 (222)
Q Consensus 98 vi 99 (222)
++
T Consensus 110 vI 111 (970)
T PRK12899 110 FI 111 (970)
T ss_pred eE
Confidence 99
No 115
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=86.53 E-value=4.9 Score=34.93 Aligned_cols=96 Identities=13% Similarity=-0.022 Sum_probs=56.3
Q ss_pred CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHH-------HHHHHHHhhCC-CCeEE
Q psy17636 112 PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLT-------WLTHNLVEFLS-TGSLL 183 (222)
Q Consensus 112 ~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~-------~L~~~l~~~~~-~~~~I 183 (222)
+..-++.+|||-|++++.-+..- +-..+.+...-.-.+-..-.++++.+-.|.. .|...|.+..+ ..+++
T Consensus 232 ~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~l 309 (441)
T COG4098 232 KEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVL 309 (441)
T ss_pred ccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEE
Confidence 45678999999987765533221 3333333333222222334566666533322 46677766543 35999
Q ss_pred EEecccHH--HH-HHhH-HCCc-eEEEecCC
Q psy17636 184 IFVTKKCF--EL-VNLI-AKNY-WLIQAVGI 209 (222)
Q Consensus 184 VF~nt~~~--~l-~~L~-~~g~-~~~~lHg~ 209 (222)
||+++... .+ ..|+ ..+. ..++.|+.
T Consensus 310 iF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~ 340 (441)
T COG4098 310 IFFPEIETMEQVAAALKKKLPKETIASVHSE 340 (441)
T ss_pred EEecchHHHHHHHHHHHhhCCccceeeeecc
Confidence 99999865 77 7773 3344 44778874
No 116
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=84.73 E-value=3.8 Score=39.85 Aligned_cols=101 Identities=9% Similarity=-0.113 Sum_probs=64.7
Q ss_pred eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--
Q psy17636 115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF-- 191 (222)
Q Consensus 115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~-- 191 (222)
....+|.|.-.+-.++...|--+.+ .+.+.......-..-.++....+|+..+.+.+.+.. ...|++|-|.|...
T Consensus 376 kLsGMTGTa~te~~Ef~~iY~l~Vv--~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE 453 (939)
T PRK12902 376 KLAGMTGTAKTEEVEFEKTYKLEVT--VIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSE 453 (939)
T ss_pred hhcccCCCCHHHHHHHHHHhCCcEE--EcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHH
Confidence 4567788876666666666533333 333221111111123445556789988887777654 34599999999866
Q ss_pred HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636 192 EL-VNLIAKNYWLIQAVGILMCPKSPS 217 (222)
Q Consensus 192 ~l-~~L~~~g~~~~~lHg~~~q~~R~~ 217 (222)
.+ ..|...|++...|+..-.+.+||.
T Consensus 454 ~ls~~L~~~gi~h~vLNAk~~~~~~EA 480 (939)
T PRK12902 454 LLSALLQEQGIPHNLLNAKPENVEREA 480 (939)
T ss_pred HHHHHHHHcCCchheeeCCCcchHhHH
Confidence 77 999999999999988644445554
No 117
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=84.28 E-value=2 Score=29.61 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=27.9
Q ss_pred CCCeEEEEeccc--HHHH-HHhHHCCceEEEecCCCCC
Q psy17636 178 STGSLLIFVTKK--CFEL-VNLIAKNYWLIQAVGILMC 212 (222)
Q Consensus 178 ~~~~~IVF~nt~--~~~l-~~L~~~g~~~~~lHg~~~q 212 (222)
...+++|+|.+- .... ..|...|+.+..|.|++..
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 97 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMKA 97 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHHh
Confidence 446899999864 3366 9999999999999999853
No 118
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=84.21 E-value=5.7 Score=38.75 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=26.2
Q ss_pred CCCeEEEEecccHH--HH-HHhHH----CCceEEEecCCCCCChHHHhhcC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIA----KNYWLIQAVGILMCPKSPSRLSL 221 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~----~g~~~~~lHg~~~q~~R~~~L~~ 221 (222)
.+++++|||+|... .+ ..|.. .++.+.. .++. ..|.+.+..
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~--q~~~-~~r~~ll~~ 720 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLA--QGIN-GSRAKIKKR 720 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEe--cCCC-ccHHHHHHH
Confidence 35799999999876 66 77764 3555433 3333 467766554
No 119
>KOG0948|consensus
Probab=83.66 E-value=4.3 Score=38.78 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=26.2
Q ss_pred CCCCeEEEEccccchHHHHHHHHh---cCCCcEEEeCCCCCCCCCeeEE
Q psy17636 111 RPNRQTLLFSATFKKRIEKLARDV---LTDPIKIVQGDIGEANTDITQV 156 (222)
Q Consensus 111 ~~~~Q~~lfSAT~~~~v~~l~~~~---l~~p~~i~v~~~~~~~~~i~q~ 156 (222)
|++...+++|||+|... ++|.-. -+.|..|.-.+-. +.-++|+
T Consensus 264 P~~vr~VFLSATiPNA~-qFAeWI~~ihkQPcHVVYTdyR--PTPLQHy 309 (1041)
T KOG0948|consen 264 PDNVRFVFLSATIPNAR-QFAEWICHIHKQPCHVVYTDYR--PTPLQHY 309 (1041)
T ss_pred cccceEEEEeccCCCHH-HHHHHHHHHhcCCceEEeecCC--CCcceee
Confidence 56778899999999774 444433 2467665443332 2335555
No 120
>KOG0354|consensus
Probab=83.23 E-value=1.8 Score=41.08 Aligned_cols=60 Identities=22% Similarity=0.150 Sum_probs=40.2
Q ss_pred CchHHHHHHHHHhhC---CCCeEEEEecccHH--HH-HHhH---HCCceEEEecC--------CCCCChHHHhhcCC
Q psy17636 163 TQKLTWLTHNLVEFL---STGSLLIFVTKKCF--EL-VNLI---AKNYWLIQAVG--------ILMCPKSPSRLSLV 222 (222)
Q Consensus 163 ~~K~~~L~~~l~~~~---~~~~~IVF~nt~~~--~l-~~L~---~~g~~~~~lHg--------~~~q~~R~~~L~~~ 222 (222)
+.|...|.+.|.+.. +..++||||.+|.. .| .+|. ..|+++..+-| +|+|++--..|..|
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~F 470 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKF 470 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHH
Confidence 678887877776553 34699999999966 66 6665 34555555444 67777766666544
No 121
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=83.18 E-value=6 Score=38.41 Aligned_cols=99 Identities=9% Similarity=-0.120 Sum_probs=62.3
Q ss_pred eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeE-EEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH-
Q psy17636 115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQ-VVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF- 191 (222)
Q Consensus 115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q-~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~- 191 (222)
....+|.|...+-.++...|--+. +.+.+. ........ ..++....+|+..+...+.... ...|++|-|.|.+.
T Consensus 361 kL~GMTGTa~te~~Ef~~iY~l~v--v~IPtn-kp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~S 437 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIYNLEV--VCIPTH-RPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKS 437 (870)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCE--EECCCC-CCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHH
Confidence 355677887665556655552232 233322 22222222 3455566788888777665554 34599999999876
Q ss_pred -HH-HHhHHCCceEEEecCCCCCChHH
Q psy17636 192 -EL-VNLIAKNYWLIQAVGILMCPKSP 216 (222)
Q Consensus 192 -~l-~~L~~~g~~~~~lHg~~~q~~R~ 216 (222)
.+ ..|...|++...|++.-.+.+||
T Consensus 438 E~ls~~L~~~gi~h~vLNAk~~~~~~E 464 (870)
T CHL00122 438 ELLSQLLKEYRLPHQLLNAKPENVRRE 464 (870)
T ss_pred HHHHHHHHHcCCccceeeCCCccchhH
Confidence 77 99999999999999864333444
No 122
>KOG0947|consensus
Probab=82.60 E-value=2.5 Score=41.21 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=18.7
Q ss_pred CCCCCCHHHHhHHHHHhCCCCCC
Q psy17636 77 EYTSPTPIQAQAVPAALSGRDII 99 (222)
Q Consensus 77 g~~~pTpIQ~~~ip~il~g~dvi 99 (222)
+| +|-+.|++||-++..|..|+
T Consensus 295 pF-elD~FQk~Ai~~lerg~SVF 316 (1248)
T KOG0947|consen 295 PF-ELDTFQKEAIYHLERGDSVF 316 (1248)
T ss_pred CC-CccHHHHHHHHHHHcCCeEE
Confidence 44 57779999999999998887
No 123
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=82.32 E-value=6.6 Score=38.93 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=22.0
Q ss_pred HHHHCCCCCCCHHHHhHHHHHhCCCCCC
Q psy17636 72 ALRKCEYTSPTPIQAQAVPAALSGRDII 99 (222)
Q Consensus 72 ~l~~~g~~~pTpIQ~~~ip~il~g~dvi 99 (222)
.....|| .|=|.|++|+-++..|..|+
T Consensus 112 ~~~~~~F-~LD~fQ~~a~~~Ler~esVl 138 (1041)
T COG4581 112 PAREYPF-ELDPFQQEAIAILERGESVL 138 (1041)
T ss_pred HHHhCCC-CcCHHHHHHHHHHhCCCcEE
Confidence 3445576 67789999999999999988
No 124
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=79.80 E-value=5.7 Score=28.89 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=26.8
Q ss_pred CCCeEEEEecc---cHHHH-HHhHHCCceEEEecCCCC
Q psy17636 178 STGSLLIFVTK---KCFEL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt---~~~~l-~~L~~~g~~~~~lHg~~~ 211 (222)
+..+++|||++ +.... ..|+..|+++..|.|++.
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 45689999963 33366 888888999999999985
No 125
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=79.78 E-value=7.2 Score=32.25 Aligned_cols=112 Identities=13% Similarity=0.011 Sum_probs=70.1
Q ss_pred CCHHHHHHHHhhCC-CCCeEEEEccccchHH----HHHHHHhc--CCC-----cEE---EeCCCCCCCCCeeEEEEEcCC
Q psy17636 98 IIEPQVRSICDHVR-PNRQTLLFSATFKKRI----EKLARDVL--TDP-----IKI---VQGDIGEANTDITQVVINLPQ 162 (222)
Q Consensus 98 vi~~~l~~Il~~~~-~~~Q~~lfSAT~~~~v----~~l~~~~l--~~p-----~~i---~v~~~~~~~~~i~q~~~~~~~ 162 (222)
++++++-.+++.+. .+.-++++||--+.-. +.+.+..+ .+. ..+ ..............-+..+.+
T Consensus 81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~ 160 (252)
T PF11019_consen 81 LIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGG 160 (252)
T ss_pred EcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCC
Confidence 44777777777764 3466888888664332 22222111 111 111 000111223345566778888
Q ss_pred CchHHHHHHHHHhhCCCCeEEEEecccHH---HH-HHhHHCCceEEEecCC
Q psy17636 163 TQKLTWLTHNLVEFLSTGSLLIFVTKKCF---EL-VNLIAKNYWLIQAVGI 209 (222)
Q Consensus 163 ~~K~~~L~~~l~~~~~~~~~IVF~nt~~~---~l-~~L~~~g~~~~~lHg~ 209 (222)
.+|=..|..+|.......+.|||+....+ .+ ..++..|+....+|=.
T Consensus 161 ~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt 211 (252)
T PF11019_consen 161 QDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYT 211 (252)
T ss_pred CccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEc
Confidence 99999998877776555689999976654 78 8999999999988854
No 126
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=78.84 E-value=27 Score=32.99 Aligned_cols=103 Identities=18% Similarity=0.106 Sum_probs=57.6
Q ss_pred CCeEEEEccccchHHHHHHHHhcCC--CcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhh-CCCCeEEEEeccc
Q psy17636 113 NRQTLLFSATFKKRIEKLARDVLTD--PIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEF-LSTGSLLIFVTKK 189 (222)
Q Consensus 113 ~~Q~~lfSAT~~~~v~~l~~~~l~~--p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~~~IVF~nt~ 189 (222)
..-.+++|||==+ +.+|-..+.+ -..|+--+ .-...|.-+++ +...+ ..+++.+.+. ....++.|-|.-.
T Consensus 411 ~Ph~LvMTATPIP--RTLAlt~fgDldvS~IdElP--~GRkpI~T~~i--~~~~~-~~v~e~i~~ei~~GrQaY~VcPLI 483 (677)
T COG1200 411 NPHVLVMTATPIP--RTLALTAFGDLDVSIIDELP--PGRKPITTVVI--PHERR-PEVYERIREEIAKGRQAYVVCPLI 483 (677)
T ss_pred CCcEEEEeCCCch--HHHHHHHhccccchhhccCC--CCCCceEEEEe--ccccH-HHHHHHHHHHHHcCCEEEEEeccc
Confidence 4678999999422 3344444443 22222111 11123444443 32333 3333445443 3456888888632
Q ss_pred H--------H--HH-HHhHHC--CceEEEecCCCCCChHHHhhcCC
Q psy17636 190 C--------F--EL-VNLIAK--NYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 190 ~--------~--~l-~~L~~~--g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
. . .+ ..|+.. ++++..+||.|+..+.+..+..|
T Consensus 484 eESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~F 529 (677)
T COG1200 484 EESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAF 529 (677)
T ss_pred cccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHH
Confidence 1 1 55 666643 67899999999999988876554
No 127
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=78.33 E-value=6.1 Score=38.58 Aligned_cols=93 Identities=8% Similarity=-0.084 Sum_probs=60.9
Q ss_pred eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCC-CCeEEEEecccHH--
Q psy17636 115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLS-TGSLLIFVTKKCF-- 191 (222)
Q Consensus 115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~-- 191 (222)
....+|.|...+..++...|--+.+. +.+.......-....++....+|+..+.+.+..... ..|+||-|.|...
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~l~Vv~--IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE 463 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYGLDVVV--IPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSE 463 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhCCCEEE--CCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHH
Confidence 35567888866666666655333333 332221111112234566678899988887776544 4599999999866
Q ss_pred HH-HHhHHCCceEEEecCC
Q psy17636 192 EL-VNLIAKNYWLIQAVGI 209 (222)
Q Consensus 192 ~l-~~L~~~g~~~~~lHg~ 209 (222)
.| ..|+..|++...|+..
T Consensus 464 ~ls~~L~~~gi~h~VLNAk 482 (913)
T PRK13103 464 HMSNLLKKEGIEHKVLNAK 482 (913)
T ss_pred HHHHHHHHcCCcHHHhccc
Confidence 77 9999999998877775
No 128
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=76.11 E-value=5 Score=27.37 Aligned_cols=34 Identities=9% Similarity=-0.110 Sum_probs=26.2
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCc-eEEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
+..++||+|++-.. .. ..|+..|+ ++..|.|+|.
T Consensus 55 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 55 RATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 34689999986533 56 78889999 6888999874
No 129
>KOG0920|consensus
Probab=75.86 E-value=22 Score=35.03 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=61.4
Q ss_pred HHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCC----------------CCCeeEEE-------
Q psy17636 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEA----------------NTDITQVV------- 157 (222)
Q Consensus 101 ~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~----------------~~~i~q~~------- 157 (222)
-.++.++.. +++-+++|+|||+. .++-..|+..+-.+.+...... ...-.++.
T Consensus 308 i~lk~lL~~-~p~LkvILMSAT~d---ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~ 383 (924)
T KOG0920|consen 308 ILLKDLLPR-NPDLKVILMSATLD---AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQL 383 (924)
T ss_pred HHHHHHhhh-CCCceEEEeeeecc---hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCcc
Confidence 334444433 46889999999997 3455667777666666542100 00111110
Q ss_pred -----EEcCCCchHHH---HHHHHHhhCCCCeEEEEecccHH--HH-HHhHH-------CCceEEEecCCCCCChH
Q psy17636 158 -----INLPQTQKLTW---LTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIA-------KNYWLIQAVGILMCPKS 215 (222)
Q Consensus 158 -----~~~~~~~K~~~---L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~-------~g~~~~~lHg~~~q~~R 215 (222)
.....+...+. |+..+......+.+|||...-.+ .+ +.|.. ..+-+..+|+.|+-.+-
T Consensus 384 ~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ 459 (924)
T KOG0920|consen 384 RLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQ 459 (924)
T ss_pred ccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHH
Confidence 00011112222 33333333345799999998776 55 55543 23678899999998443
No 130
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=75.42 E-value=11 Score=37.18 Aligned_cols=97 Identities=7% Similarity=-0.084 Sum_probs=61.8
Q ss_pred eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCee-EEEEEcCCCchHHHHHHHHHhhCC-CCeEEEEecccHH-
Q psy17636 115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDIT-QVVINLPQTQKLTWLTHNLVEFLS-TGSLLIFVTKKCF- 191 (222)
Q Consensus 115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~-q~~~~~~~~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~- 191 (222)
....+|.|.-.+-.++...|--+. +.+.+... ..... ...++....+|+..+...+.+... ..|++|-|.|...
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~l~v--~~iPt~kp-~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~s 581 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYNLYV--LQVPTFKP-CLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVS 581 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCE--EECCCCCC-ceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHH
Confidence 556788888666666655553332 23322211 11111 123456667899888777766543 3589999999865
Q ss_pred -HH-HHhHHCCceEEEecCCCCCChHH
Q psy17636 192 -EL-VNLIAKNYWLIQAVGILMCPKSP 216 (222)
Q Consensus 192 -~l-~~L~~~g~~~~~lHg~~~q~~R~ 216 (222)
.+ ..|...|++...|+.. +.+++
T Consensus 582 e~ls~~L~~~gi~h~vLNak--~~~~E 606 (970)
T PRK12899 582 EKLSRILRQNRIEHTVLNAK--NHAQE 606 (970)
T ss_pred HHHHHHHHHcCCcceecccc--hhhhH
Confidence 77 9999999999999886 33444
No 131
>KOG0385|consensus
Probab=74.36 E-value=10 Score=36.36 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=57.0
Q ss_pred HHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCC-CCeEEEEecccHH--HH-HHhHHCCceEEEe
Q psy17636 131 ARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLS-TGSLLIFVTKKCF--EL-VNLIAKNYWLIQA 206 (222)
Q Consensus 131 ~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~--~l-~~L~~~g~~~~~l 206 (222)
.++..+.|..+.--..+..-..-+|. |.+.-|+..|-.+|..... ..+|+||..-..- -| .++.-.||..+-|
T Consensus 441 LRKccnHPYLF~g~ePg~pyttdehL---v~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRi 517 (971)
T KOG0385|consen 441 LRKCCNHPYLFDGAEPGPPYTTDEHL---VTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRL 517 (971)
T ss_pred HHHhcCCccccCCCCCCCCCCcchHH---HhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEee
Confidence 44455566665432221222222332 3456677766555554433 4699999863332 55 8888889999999
Q ss_pred cCCCCCChHHHhhcCC
Q psy17636 207 VGILMCPKSPSRLSLV 222 (222)
Q Consensus 207 Hg~~~q~~R~~~L~~~ 222 (222)
-|+++.++|..++..|
T Consensus 518 DGSt~~eeR~~aI~~f 533 (971)
T KOG0385|consen 518 DGSTSHEEREDAIEAF 533 (971)
T ss_pred cCCCCcHHHHHHHHhc
Confidence 9999999999998765
No 132
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=74.17 E-value=5.5 Score=26.59 Aligned_cols=35 Identities=6% Similarity=-0.054 Sum_probs=27.3
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILMC 212 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~q 212 (222)
...++||+|++... .+ ..|+..|++ +..|.|++..
T Consensus 55 ~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~ 93 (100)
T smart00450 55 KDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKE 93 (100)
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHH
Confidence 34689999976543 67 889999997 8889998753
No 133
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=74.10 E-value=4.3 Score=27.98 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=26.0
Q ss_pred CCCeEEEEecccH--HHH-HHhHHCCce-EEEecCCCC
Q psy17636 178 STGSLLIFVTKKC--FEL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~--~~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
+..+++|+|++-. ... ..|...|++ +..|.|++.
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 4568999997643 355 888899995 888999874
No 134
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=73.45 E-value=3.6 Score=29.66 Aligned_cols=35 Identities=9% Similarity=0.108 Sum_probs=27.5
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCc--eEEEecCCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNY--WLIQAVGILMC 212 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~--~~~~lHg~~~q 212 (222)
...+++|+|++-.. .. ..|...|+ ++..+.|++..
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~ 110 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKA 110 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHH
Confidence 34689999987433 56 88999999 68999999854
No 135
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=72.69 E-value=5.8 Score=27.80 Aligned_cols=34 Identities=6% Similarity=-0.130 Sum_probs=26.5
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCce--EEEecCCCCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNYW--LIQAVGILMC 212 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~~--~~~lHg~~~q 212 (222)
..+++|||++-.. .. ..|+..|++ +..|.|+|..
T Consensus 66 ~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~ 104 (109)
T cd01533 66 RTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQG 104 (109)
T ss_pred CCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHH
Confidence 3589999986533 56 889999994 8899999853
No 136
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=72.59 E-value=5.7 Score=27.04 Aligned_cols=33 Identities=9% Similarity=-0.072 Sum_probs=25.8
Q ss_pred CCeEEEEeccc--HHHH-HHhHHCCceEEEecCCCC
Q psy17636 179 TGSLLIFVTKK--CFEL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 179 ~~~~IVF~nt~--~~~l-~~L~~~g~~~~~lHg~~~ 211 (222)
..+++++|.+- .... ..|...|+++..+.|++.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 45899999763 3355 888999999888999884
No 137
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=72.51 E-value=5 Score=38.33 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=47.6
Q ss_pred EcCCCchHHHHHHHHHhhCCCC-eEEEEecccHH--HH-HHhHH-CCceEEEecCCCCCChHHHhh
Q psy17636 159 NLPQTQKLTWLTHNLVEFLSTG-SLLIFVTKKCF--EL-VNLIA-KNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 159 ~~~~~~K~~~L~~~l~~~~~~~-~~IVF~nt~~~--~l-~~L~~-~g~~~~~lHg~~~q~~R~~~L 219 (222)
-+..+.|.+..++++.+....| ++||-+.-... .+ ..|+. .|.+++.+|++++..+|....
T Consensus 224 GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W 289 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVW 289 (730)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHH
Confidence 3566889998888887766554 88999987754 66 55554 589999999999999998764
No 138
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=72.25 E-value=10 Score=25.51 Aligned_cols=34 Identities=9% Similarity=0.100 Sum_probs=26.1
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCc-eEEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
+..+++|+|++-.. .. ..|+..|+ ++..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 45689999986533 66 88999998 4788998874
No 139
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=71.79 E-value=7.6 Score=27.29 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=27.4
Q ss_pred CCCeEEEEeccc--HH--HH-HHhHHCCceEEEecCCCCC
Q psy17636 178 STGSLLIFVTKK--CF--EL-VNLIAKNYWLIQAVGILMC 212 (222)
Q Consensus 178 ~~~~~IVF~nt~--~~--~l-~~L~~~g~~~~~lHg~~~q 212 (222)
+..+++|+|++- .. .. ..|...|+++..|.|++..
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~~ 102 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLDW 102 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHHH
Confidence 456899999853 12 66 8889999999999999843
No 140
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=71.60 E-value=6.1 Score=27.01 Aligned_cols=33 Identities=12% Similarity=-0.049 Sum_probs=25.3
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCc-eEEEecCCCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
..+++++|++-.. .. ..|.+.|+ ++..++|++.
T Consensus 54 ~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 54 ANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 4689999987533 56 88888888 6778999874
No 141
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=71.03 E-value=8.8 Score=36.96 Aligned_cols=59 Identities=20% Similarity=0.109 Sum_probs=46.0
Q ss_pred chHHHHHHHH-HhhCCC-C--eEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 164 QKLTWLTHNL-VEFLST-G--SLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 164 ~K~~~L~~~l-~~~~~~-~--~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.|...+.++| ...... . +++||+.-... -+ ..|...|+....++|+++.++|...+..|
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f 757 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRF 757 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHh
Confidence 6777777766 333323 3 89999987655 56 88888899999999999999999887665
No 142
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=69.05 E-value=9.7 Score=38.39 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=27.9
Q ss_pred CCeEEEEecccHH--HH-HHhHHC------Cc---eEEEecCCCCCChHHHhhcCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAK------NY---WLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~------g~---~~~~lHg~~~q~~R~~~L~~~ 222 (222)
++++||||.++.. .+ ..|... |+ .+..+||+++. |.+.+..|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~--~~~li~~F 751 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDK--PDQLIRRF 751 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccc--hHHHHHHH
Confidence 4799999998865 55 555432 22 56779999864 55555543
No 143
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=67.92 E-value=16 Score=27.28 Aligned_cols=41 Identities=10% Similarity=0.002 Sum_probs=29.2
Q ss_pred HHHHhhCCCCeEEEEecccHH--HH-HHhHHCCc-eEEEecCCCC
Q psy17636 171 HNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 171 ~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
..+....+..+++|+|.+... .. ..|...|+ ++..|.|++.
T Consensus 41 ~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 41 QALEKLPAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred HHHHhcCCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 344443344689999976533 55 78998888 7899999864
No 144
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=67.36 E-value=17 Score=24.85 Aligned_cols=34 Identities=6% Similarity=0.119 Sum_probs=25.9
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILMC 212 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~q 212 (222)
..+++++|++-.. .. ..|...|+. +..|.|++..
T Consensus 58 ~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 58 DKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 4689999987533 55 788889995 7889998753
No 145
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=67.16 E-value=11 Score=25.61 Aligned_cols=33 Identities=12% Similarity=0.041 Sum_probs=25.8
Q ss_pred CCeEEEEecc--cH--HHH-HHhHHCCc-eEEEecCCCC
Q psy17636 179 TGSLLIFVTK--KC--FEL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 179 ~~~~IVF~nt--~~--~~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
..+++|+|.+ +. ... ..|...|+ ++..+.|+|.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 5689999987 43 266 88899998 5788999874
No 146
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=66.86 E-value=12 Score=37.24 Aligned_cols=93 Identities=11% Similarity=-0.043 Sum_probs=59.6
Q ss_pred EEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCC-CCeEEEEecccHH--H
Q psy17636 116 TLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLS-TGSLLIFVTKKCF--E 192 (222)
Q Consensus 116 ~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~--~ 192 (222)
...+|.|...+-.++...|--+.+ .+.+.......=..-.++....+|+.++...+.+... ..|+||=|.|... .
T Consensus 566 LsGMTGTA~tea~Ef~~IY~L~Vv--~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~ 643 (1112)
T PRK12901 566 LAGMTGTAETEAGEFWDIYKLDVV--VIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISEL 643 (1112)
T ss_pred hcccCCCCHHHHHHHHHHhCCCEE--ECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHH
Confidence 345677776666666555533333 3332221111112235556668899988887776643 3599999999865 6
Q ss_pred H-HHhHHCCceEEEecCCC
Q psy17636 193 L-VNLIAKNYWLIQAVGIL 210 (222)
Q Consensus 193 l-~~L~~~g~~~~~lHg~~ 210 (222)
| ..|...|++...|+...
T Consensus 644 lS~~L~~~gI~H~VLNAK~ 662 (1112)
T PRK12901 644 LSRMLKMRKIPHNVLNAKL 662 (1112)
T ss_pred HHHHHHHcCCcHHHhhccc
Confidence 7 99999999988887763
No 147
>KOG0387|consensus
Probab=66.16 E-value=14 Score=35.56 Aligned_cols=206 Identities=21% Similarity=0.276 Sum_probs=117.6
Q ss_pred CCCCCCCCCCCcccccccccCCCChhhhcCCHHHHHHHHHHcCCEEecCCCCCCCCC------c---CCCCCCHHHHHHH
Q psy17636 3 DPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSS------F---GHFGFDEVLMKAL 73 (222)
Q Consensus 3 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~p~~~~~------f---~~l~l~~~l~~~l 73 (222)
|.+..++|..+-+..=-+ +-+|..+ -..-+..++..+.|-.+|..+-.-+.. | +.||-.+...+..
T Consensus 331 d~l~~~~W~y~ILDEGH~-IrNpns~----islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f 405 (923)
T KOG0387|consen 331 DDLLGILWDYVILDEGHR-IRNPNSK----ISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNF 405 (923)
T ss_pred cccccccccEEEecCccc-ccCCccH----HHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhh
Confidence 345556666655544322 1122211 123466666777788888654433221 1 2356555555544
Q ss_pred ----HHCCCCCCCHHHHh-HHHHHhCCCCCCHH--------HHHHHHhhCCC-CCeEEEEccccchHHHHHHHHhcC---
Q psy17636 74 ----RKCEYTSPTPIQAQ-AVPAALSGRDIIEP--------QVRSICDHVRP-NRQTLLFSATFKKRIEKLARDVLT--- 136 (222)
Q Consensus 74 ----~~~g~~~pTpIQ~~-~ip~il~g~dvi~~--------~l~~Il~~~~~-~~Q~~lfSAT~~~~v~~l~~~~l~--- 136 (222)
..-||...||+|.+ |..++..=+|+|.+ ++.. ..+|+ +-++++|+=|-- =+++-..|+.
T Consensus 406 ~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~--~~Lp~K~E~VlfC~LT~~--QR~~Y~~fl~s~~ 481 (923)
T KOG0387|consen 406 EHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG--LKLPKKEEIVLFCRLTKL--QRRLYQRFLNSSE 481 (923)
T ss_pred hhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh--ccCCCccceEEEEeccHH--HHHHHHHHhhhHH
Confidence 44589999999987 45555566788722 2222 13443 457777776632 1222222222
Q ss_pred -----------------------CCcEEEeCCCCCCCCCeeEE--E-EEcCCCchHHHHHHHHHhhCCC-CeEEEEeccc
Q psy17636 137 -----------------------DPIKIVQGDIGEANTDITQV--V-INLPQTQKLTWLTHNLVEFLST-GSLLIFVTKK 189 (222)
Q Consensus 137 -----------------------~p~~i~v~~~~~~~~~i~q~--~-~~~~~~~K~~~L~~~l~~~~~~-~~~IVF~nt~ 189 (222)
.|-.+.-.. +...|. + -.+...-|+..|..+|...... .+++.|..|+
T Consensus 482 v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~-----~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~ 556 (923)
T KOG0387|consen 482 VNKILNGKRNCLSGIDILRKICNHPDLLDRRD-----EDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSR 556 (923)
T ss_pred HHHHHcCCccceechHHHHhhcCCcccccCcc-----cccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHH
Confidence 121111100 011111 1 1223356888888888776543 4999999998
Q ss_pred HH--HH-HHhH-HCCceEEEecCCCCCChHHHhhcCC
Q psy17636 190 CF--EL-VNLI-AKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 190 ~~--~l-~~L~-~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.- -| .+|. ..||+...+-|.-+-..|.+....|
T Consensus 557 ~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~F 593 (923)
T KOG0387|consen 557 QMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRF 593 (923)
T ss_pred HHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhh
Confidence 77 55 7777 5899999999999999998876654
No 148
>KOG0923|consensus
Probab=64.93 E-value=73 Score=30.43 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=66.2
Q ss_pred HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhh---
Q psy17636 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEF--- 176 (222)
Q Consensus 100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--- 176 (222)
...|.+|++. +++-..++-|||+.. +++. .|+.+.-.+.+....- .|.-+|-..++.+=+++-+.-+.+.
T Consensus 398 fgLvKDIar~-RpdLKllIsSAT~DA--ekFS-~fFDdapIF~iPGRRy---PVdi~Yt~~PEAdYldAai~tVlqIH~t 470 (902)
T KOG0923|consen 398 FGLVKDIARF-RPDLKLLISSATMDA--EKFS-AFFDDAPIFRIPGRRY---PVDIFYTKAPEADYLDAAIVTVLQIHLT 470 (902)
T ss_pred HHHHHHHHhh-CCcceEEeeccccCH--HHHH-HhccCCcEEeccCccc---ceeeecccCCchhHHHHHHhhheeeEec
Confidence 5666666654 568889999999963 3454 3555443333433221 2444666666644444332323222
Q ss_pred CCCCeEEEEecccHH------HH-HHhHHCC-----ceEEEecCCCCCChHHHhh
Q psy17636 177 LSTGSLLIFVTKKCF------EL-VNLIAKN-----YWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 177 ~~~~~~IVF~nt~~~------~l-~~L~~~g-----~~~~~lHg~~~q~~R~~~L 219 (222)
.+.+-+|||..-..+ .| +..+..| +-+..+|++|+++.-.+.+
T Consensus 471 qp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIF 525 (902)
T KOG0923|consen 471 QPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIF 525 (902)
T ss_pred cCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhc
Confidence 244789999965433 34 4444443 3568899999998877665
No 149
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=63.69 E-value=9.7 Score=26.25 Aligned_cols=33 Identities=9% Similarity=0.018 Sum_probs=25.6
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
..++++||++-.. .. ..|...|++ +..+.|++.
T Consensus 66 ~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 66 DKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 4589999987544 66 888999995 788888874
No 150
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=61.79 E-value=22 Score=25.01 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=25.7
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
+..++|++|++-.. .. ..|...|++ +..+-|++.
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 114 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS 114 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH
Confidence 34689999987423 66 889999994 788888874
No 151
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=61.70 E-value=33 Score=32.95 Aligned_cols=88 Identities=15% Similarity=0.111 Sum_probs=45.8
Q ss_pred HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-CchH-----HHHHHHH
Q psy17636 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-TQKL-----TWLTHNL 173 (222)
Q Consensus 100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~-----~~L~~~l 173 (222)
..++--.... ..+..++|-|||=+ ++......-.....+.+........--+..++-... ..+. ..|++.+
T Consensus 337 ARdvA~~Ra~-~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i 413 (730)
T COG1198 337 ARDVAVLRAK-KENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAI 413 (730)
T ss_pred HHHHHHHHHH-HhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHH
Confidence 4445433333 35788999999954 455544432333444443332211112233344433 2222 3466666
Q ss_pred HhhC-CCCeEEEEecccH
Q psy17636 174 VEFL-STGSLLIFVTKKC 190 (222)
Q Consensus 174 ~~~~-~~~~~IVF~nt~~ 190 (222)
.+.. ...++|+|.|+|-
T Consensus 414 ~~~l~~geQ~llflnRRG 431 (730)
T COG1198 414 RKTLERGEQVLLFLNRRG 431 (730)
T ss_pred HHHHhcCCeEEEEEccCC
Confidence 6554 3469999999883
No 152
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=61.54 E-value=11 Score=25.91 Aligned_cols=33 Identities=9% Similarity=-0.090 Sum_probs=25.4
Q ss_pred CCeEEEEecccH--HHH-HHhHHCCce-EEEecCCCC
Q psy17636 179 TGSLLIFVTKKC--FEL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 179 ~~~~IVF~nt~~--~~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
..+++|+|.+-. ... ..|...|+. +..|.|++.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 458899997643 366 888999995 778999984
No 153
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=60.68 E-value=8.9 Score=26.20 Aligned_cols=34 Identities=6% Similarity=-0.001 Sum_probs=25.8
Q ss_pred CCCeEEEEecccH--HHH-HHhHHCCce-EEEecCCCC
Q psy17636 178 STGSLLIFVTKKC--FEL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~--~~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
+..+++|||++-. ... ..|...|+. +..+-|++.
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 3468999997642 266 888899987 888888874
No 154
>PRK14873 primosome assembly protein PriA; Provisional
Probab=60.55 E-value=20 Score=34.10 Aligned_cols=59 Identities=15% Similarity=-0.067 Sum_probs=45.3
Q ss_pred CCchHHHHHHHHHhhCC-CCeEEEEecccHH--HH-HHhHHC-C-ceEEEecCCCCCChHHHhhc
Q psy17636 162 QTQKLTWLTHNLVEFLS-TGSLLIFVTKKCF--EL-VNLIAK-N-YWLIQAVGILMCPKSPSRLS 220 (222)
Q Consensus 162 ~~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~--~l-~~L~~~-g-~~~~~lHg~~~q~~R~~~L~ 220 (222)
.+.|.+..++++.+... .+++||-+..... .+ ..|+.. | -.++.+|++++..+|.++..
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~ 234 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWL 234 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHH
Confidence 56788887787766554 4589999988765 67 776643 5 68999999999999988754
No 155
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=57.00 E-value=31 Score=34.15 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=16.3
Q ss_pred CCCeEEEEecccHH--HH-HHhHHC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAK 199 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~ 199 (222)
..++++||++|... .+ ..|...
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~ 775 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNE 775 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhc
Confidence 35799999998866 66 777643
No 156
>PRK05580 primosome assembly protein PriA; Validated
Probab=56.43 E-value=25 Score=33.43 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=40.7
Q ss_pred CchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHH-CCceEEEecCCCCCChHHHhh
Q psy17636 163 TQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIA-KNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 163 ~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~-~g~~~~~lHg~~~q~~R~~~L 219 (222)
.-|....+..+.... ...++||-+.++.- ++ ..|+. .|.+++.+||+++..+|...+
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~ 234 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEW 234 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHH
Confidence 567765544444332 24589999999865 66 66655 588999999999998887654
No 157
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=56.29 E-value=27 Score=33.23 Aligned_cols=58 Identities=12% Similarity=0.014 Sum_probs=39.0
Q ss_pred CchHHH-HHHHHHhhCCCCeEEEEecccHH------HH-HHhHHCCceEEEecCCCCCChHHHhhc
Q psy17636 163 TQKLTW-LTHNLVEFLSTGSLLIFVTKKCF------EL-VNLIAKNYWLIQAVGILMCPKSPSRLS 220 (222)
Q Consensus 163 ~~K~~~-L~~~l~~~~~~~~~IVF~nt~~~------~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~ 220 (222)
.-|... ++-.+....+..+++|-+.|+.- .+ ..+...|+++..+||+++..+|.+.+.
T Consensus 293 SGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~ 358 (681)
T PRK10917 293 SGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILE 358 (681)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHH
Confidence 556543 22333333345689999999842 44 556667899999999999888776543
No 158
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=56.17 E-value=18 Score=27.64 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=26.2
Q ss_pred CCCeEEEEecccH--H-HH-HHhHHCCce-EEEecCCCC
Q psy17636 178 STGSLLIFVTKKC--F-EL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~--~-~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
+..++|+||++-+ . .. ..|+..|++ +..|.|++.
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~ 153 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTD 153 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHH
Confidence 4568999998643 2 56 888999996 778999875
No 159
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=55.89 E-value=32 Score=23.88 Aligned_cols=41 Identities=5% Similarity=-0.033 Sum_probs=28.0
Q ss_pred HHHhhCCCCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCCC
Q psy17636 172 NLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILMC 212 (222)
Q Consensus 172 ~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~q 212 (222)
.+.......+++|+|.+-.. .. ..|+..|+. +..+.|++..
T Consensus 51 ~~~~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T PRK00162 51 FMRQADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEA 95 (108)
T ss_pred HHHhcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHH
Confidence 33333334678888976433 55 889999996 7789998743
No 160
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=55.89 E-value=17 Score=25.80 Aligned_cols=35 Identities=11% Similarity=0.021 Sum_probs=26.5
Q ss_pred CCCeEEEEeccc-HH--HH-HHhHHCCce-EEEecCCCCC
Q psy17636 178 STGSLLIFVTKK-CF--EL-VNLIAKNYW-LIQAVGILMC 212 (222)
Q Consensus 178 ~~~~~IVF~nt~-~~--~l-~~L~~~g~~-~~~lHg~~~q 212 (222)
+..++|+||++- .. .. ..|...|++ +..|-|++..
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~ 117 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQA 117 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHH
Confidence 356899999772 22 66 888999986 8888898853
No 161
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.38 E-value=32 Score=31.52 Aligned_cols=57 Identities=11% Similarity=0.019 Sum_probs=40.1
Q ss_pred CchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHH-CCceEEEecCCCCCChHHHhh
Q psy17636 163 TQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIA-KNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 163 ~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~-~g~~~~~lHg~~~q~~R~~~L 219 (222)
.-|....+..+.... ..+++||-+.+..- ++ ..|+. .|.+++.+||+++..+|....
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHH
Confidence 556665555454333 24589999998854 66 66654 488899999999999987654
No 162
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=55.15 E-value=25 Score=22.82 Aligned_cols=34 Identities=6% Similarity=0.007 Sum_probs=25.3
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCc-eEEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
+..++||+|++... .. ..|+..|+ ++..+-|++.
T Consensus 49 ~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 49 KDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 45689999986533 66 88999976 5677888874
No 163
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=54.84 E-value=49 Score=31.16 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=21.1
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCce-EEEecCCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGIL 210 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~ 210 (222)
+++++||+.+... .+ ..+...+.. ....+|+-
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~ 514 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED 514 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC
Confidence 4689999988655 67 777776653 34444443
No 164
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=54.76 E-value=43 Score=26.94 Aligned_cols=35 Identities=14% Similarity=-0.100 Sum_probs=30.8
Q ss_pred CeEEEEecccHHHH-HHhHHCCceEEEecCCCCCCh
Q psy17636 180 GSLLIFVTKKCFEL-VNLIAKNYWLIQAVGILMCPK 214 (222)
Q Consensus 180 ~~~IVF~nt~~~~l-~~L~~~g~~~~~lHg~~~q~~ 214 (222)
..+-||+|...+++ ..+...+..+.-|||+.+.+.
T Consensus 54 ~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e~~~~ 89 (208)
T COG0135 54 KVVGVFVNESIEEILEIAEELGLDAVQLHGDEDPEY 89 (208)
T ss_pred CEEEEECCCCHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 58999999998888 889999999999999987653
No 165
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=54.73 E-value=27 Score=23.92 Aligned_cols=33 Identities=6% Similarity=0.016 Sum_probs=22.5
Q ss_pred CCeEEEEecccHH------H-H-HHhHHCCc-eEEEecCCCC
Q psy17636 179 TGSLLIFVTKKCF------E-L-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 179 ~~~~IVF~nt~~~------~-l-~~L~~~g~-~~~~lHg~~~ 211 (222)
...+|++|++... . + ..|...|+ ++..|.||+.
T Consensus 67 ~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 67 DKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp TSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred cccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 3578888954322 2 2 33888898 8999999874
No 166
>PLN02160 thiosulfate sulfurtransferase
Probab=52.12 E-value=21 Score=26.39 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=26.7
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILMC 212 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~q 212 (222)
...++|++|.+-.. .. ..|...|+. +..+.|+|..
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~ 118 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLA 118 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHH
Confidence 34689999987644 55 888899995 7788998754
No 167
>PRK05320 rhodanese superfamily protein; Provisional
Probab=51.38 E-value=31 Score=28.60 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=28.0
Q ss_pred CCCeEEEEecc--cHHHH-HHhHHCCce-EEEecCCCCC
Q psy17636 178 STGSLLIFVTK--KCFEL-VNLIAKNYW-LIQAVGILMC 212 (222)
Q Consensus 178 ~~~~~IVF~nt--~~~~l-~~L~~~g~~-~~~lHg~~~q 212 (222)
+..++++||.+ ++... ..|+..|++ +..|.|++..
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 45689999987 34466 999999995 8899999854
No 168
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=51.26 E-value=49 Score=25.58 Aligned_cols=41 Identities=15% Similarity=0.032 Sum_probs=28.9
Q ss_pred CCeEEEEecccHH--H----H-HHhHHCCceEEEecCCCCCChHHHhh
Q psy17636 179 TGSLLIFVTKKCF--E----L-VNLIAKNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~----l-~~L~~~g~~~~~lHg~~~q~~R~~~L 219 (222)
..++||.|+++.- + + ......++.+..+||+.+..++...+
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL 116 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh
Confidence 4579999998854 2 3 44444588999999999876665444
No 169
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=50.71 E-value=47 Score=29.79 Aligned_cols=50 Identities=8% Similarity=0.111 Sum_probs=35.6
Q ss_pred CchHHHHHHHHHhhCCCCeEEEEecccHH-------HH-HHhHHCCceEEEecCCCCCC
Q psy17636 163 TQKLTWLTHNLVEFLSTGSLLIFVTKKCF-------EL-VNLIAKNYWLIQAVGILMCP 213 (222)
Q Consensus 163 ~~K~~~L~~~l~~~~~~~~~IVF~nt~~~-------~l-~~L~~~g~~~~~lHg~~~q~ 213 (222)
..|.+.+.+++.+. +-.-+|.|++.-|. .+ +.+.+.|+++..|.||++..
T Consensus 347 ~~R~~~l~~li~e~-~vDGVI~~~~~~C~~~s~e~~~ik~~l~~~GIP~L~ietD~~d~ 404 (430)
T TIGR03191 347 RIKSEMMLNIARDW-NVDGCMLHLNRGCEGLSIGIMENRLAIAKAGIPIMTFEGNMGDE 404 (430)
T ss_pred hHHHHHHHHHHHHH-CCCEEEEcCCCCCccchHhHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 56777776655544 44567777664333 56 77888999999999999873
No 170
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.60 E-value=97 Score=29.63 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=18.7
Q ss_pred HHHHHHHHhhCCCCCeEEEEccccchHHHHHHH
Q psy17636 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLAR 132 (222)
Q Consensus 100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~ 132 (222)
...+..++.. -+-++++|||+++- ..+..
T Consensus 431 s~~~~~i~~~---~~svil~SgTL~p~-~~~~~ 459 (705)
T TIGR00604 431 SIALKPLFER---VRSVILASGTLSPL-DAFPR 459 (705)
T ss_pred HHHHHHHHHh---cCEEEEecccCCcH-HHHHH
Confidence 4455556554 45799999999653 34443
No 171
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=49.59 E-value=32 Score=27.50 Aligned_cols=35 Identities=14% Similarity=-0.005 Sum_probs=30.5
Q ss_pred CeEEEEecccHHHH-HHhHHCCceEEEecCCCCCCh
Q psy17636 180 GSLLIFVTKKCFEL-VNLIAKNYWLIQAVGILMCPK 214 (222)
Q Consensus 180 ~~~IVF~nt~~~~l-~~L~~~g~~~~~lHg~~~q~~ 214 (222)
.++-||+|...+.+ ..+...|..+.-|||+-+.+.
T Consensus 54 ~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~e~~~~ 89 (207)
T PRK13958 54 DKVCVVVNPDLTTIEHILSNTSINTIQLHGTESIDF 89 (207)
T ss_pred CEEEEEeCCCHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 57999999988888 888899999999999887543
No 172
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=46.02 E-value=21 Score=24.50 Aligned_cols=33 Identities=6% Similarity=0.095 Sum_probs=25.9
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCceEE-EecCCCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNYWLI-QAVGILM 211 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~~~~-~lHg~~~ 211 (222)
..+++|+|.+=.. .. ..|+..|+... .+.|++.
T Consensus 61 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~ 97 (110)
T COG0607 61 DDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGID 97 (110)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHH
Confidence 4689999986533 55 99999999887 8888764
No 173
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=44.83 E-value=33 Score=24.38 Aligned_cols=35 Identities=3% Similarity=0.007 Sum_probs=26.1
Q ss_pred CCCeEEEEecccH--HHH-HHhHHCCce-EEEecCCCCC
Q psy17636 178 STGSLLIFVTKKC--FEL-VNLIAKNYW-LIQAVGILMC 212 (222)
Q Consensus 178 ~~~~~IVF~nt~~--~~l-~~L~~~g~~-~~~lHg~~~q 212 (222)
+..++|++|++-. ... ..|...|+. +..+.|+++.
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~ 101 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEG 101 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceec
Confidence 4468899997643 356 888999995 6678898865
No 174
>KOG0391|consensus
Probab=44.64 E-value=34 Score=34.88 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=40.6
Q ss_pred chHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636 164 QKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL 221 (222)
Q Consensus 164 ~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~ 221 (222)
+++..|++.|+. ...+++||+.-..- -| .+|..+|+--+-|-|.-+-+||.....-
T Consensus 1263 QtLAiLLqQLk~--eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmer 1321 (1958)
T KOG0391|consen 1263 QTLAILLQQLKS--EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMER 1321 (1958)
T ss_pred HHHHHHHHHHHh--cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHH
Confidence 344444444443 24699999974433 66 9999999999999999999999765543
No 175
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=44.21 E-value=14 Score=21.52 Aligned_cols=10 Identities=60% Similarity=0.767 Sum_probs=8.0
Q ss_pred CCCHHHHhHH
Q psy17636 80 SPTPIQAQAV 89 (222)
Q Consensus 80 ~pTpIQ~~~i 89 (222)
-|||||..|=
T Consensus 7 LP~PiqQsAk 16 (44)
T PF13080_consen 7 LPTPIQQSAK 16 (44)
T ss_pred cCchHHHHHH
Confidence 4899998873
No 176
>KOG0347|consensus
Probab=43.97 E-value=22 Score=33.02 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=30.6
Q ss_pred eEEEEecccHH--HH-HHhH----HCCceEEEecCCCCCChHHHhhc
Q psy17636 181 SLLIFVTKKCF--EL-VNLI----AKNYWLIQAVGILMCPKSPSRLS 220 (222)
Q Consensus 181 ~~IVF~nt~~~--~l-~~L~----~~g~~~~~lHg~~~q~~R~~~L~ 220 (222)
-++||+.||.- ++ ..|. .-|+.+++|.|||+++.-+..|.
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~ 311 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLN 311 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHh
Confidence 38999999954 55 5554 45999999999999877666553
No 177
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=43.57 E-value=46 Score=23.37 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=24.0
Q ss_pred CeEEEEecccHH--HH-HHhHHCCceEEEecCCCC
Q psy17636 180 GSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 180 ~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~ 211 (222)
.+++++|++-.. .. ..|...|+.....-|++.
T Consensus 61 ~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 95 (104)
T PRK10287 61 DTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLK 95 (104)
T ss_pred CeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCHH
Confidence 579999987433 56 888899998666678764
No 178
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=43.43 E-value=84 Score=25.09 Aligned_cols=34 Identities=18% Similarity=-0.021 Sum_probs=29.9
Q ss_pred CeEEEEecccHHHH-HHhHHCCceEEEecCCCCCC
Q psy17636 180 GSLLIFVTKKCFEL-VNLIAKNYWLIQAVGILMCP 213 (222)
Q Consensus 180 ~~~IVF~nt~~~~l-~~L~~~g~~~~~lHg~~~q~ 213 (222)
.++-||+|...+.+ ..++..++.+.-|||+.+..
T Consensus 56 ~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~e~~~ 90 (210)
T PRK01222 56 KVVGVFVNASDEEIDEIVETVPLDLLQLHGDETPE 90 (210)
T ss_pred CEEEEEeCCCHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 58999999988888 88899999999999987644
No 179
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=43.39 E-value=50 Score=31.12 Aligned_cols=57 Identities=12% Similarity=0.012 Sum_probs=37.5
Q ss_pred CchHHH-HHHHHHhhCCCCeEEEEecccHH------HH-HHhHHCCceEEEecCCCCCChHHHhh
Q psy17636 163 TQKLTW-LTHNLVEFLSTGSLLIFVTKKCF------EL-VNLIAKNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 163 ~~K~~~-L~~~l~~~~~~~~~IVF~nt~~~------~l-~~L~~~g~~~~~lHg~~~q~~R~~~L 219 (222)
.-|... ++..+....+..+++|-+.|+.- .+ ..+...|+++..+||+++..+|...+
T Consensus 267 SGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~ 331 (630)
T TIGR00643 267 SGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELL 331 (630)
T ss_pred CcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHH
Confidence 445542 32333333344688888998843 34 55555689999999999988877654
No 180
>PRK01415 hypothetical protein; Validated
Probab=43.01 E-value=47 Score=27.43 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=27.2
Q ss_pred CCCCeEEEEecc--cHHHH-HHhHHCCce-EEEecCCCC
Q psy17636 177 LSTGSLLIFVTK--KCFEL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 177 ~~~~~~IVF~nt--~~~~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
....++++||.+ |+... ..|++.|+. +..|.|++.
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~ 207 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGIL 207 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHH
Confidence 345689999975 34466 889999995 888999864
No 181
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=42.50 E-value=33 Score=24.68 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=23.4
Q ss_pred CCCeEEEEec-cc--HHHH-HHhHHC------------Cc-eEEEecCCCC
Q psy17636 178 STGSLLIFVT-KK--CFEL-VNLIAK------------NY-WLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~n-t~--~~~l-~~L~~~------------g~-~~~~lHg~~~ 211 (222)
+..++|++|+ +- .... ..|+.. |+ ++..|.|++.
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 3468999996 53 2255 666653 66 7899999975
No 182
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=40.79 E-value=52 Score=22.90 Aligned_cols=33 Identities=9% Similarity=0.074 Sum_probs=23.5
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~ 211 (222)
..+++++|++-.. .. ..|...|+.....-|++.
T Consensus 58 ~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 93 (101)
T TIGR02981 58 NDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGIK 93 (101)
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCHH
Confidence 3578899987544 55 889999997555447753
No 183
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=40.53 E-value=39 Score=32.98 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=27.4
Q ss_pred CCCchHHHHHHHHHhhC----------CCCeEEEEecccHH--HH-HHhHH
Q psy17636 161 PQTQKLTWLTHNLVEFL----------STGSLLIFVTKKCF--EL-VNLIA 198 (222)
Q Consensus 161 ~~~~K~~~L~~~l~~~~----------~~~~~IVF~nt~~~--~l-~~L~~ 198 (222)
..+-|+..|.++|.+.. +++++||||+.+.+ .| ++|..
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 45778888887775432 24689999998755 77 87755
No 184
>KOG0384|consensus
Probab=40.08 E-value=22 Score=35.88 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=37.2
Q ss_pred CeEEEEeccc-HH-HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 180 GSLLIFVTKK-CF-EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 180 ~~~IVF~nt~-~~-~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.+|+||-.-. +- -| ++|...||+.--|-|.+.-+.|-.++.-|
T Consensus 700 HrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhF 745 (1373)
T KOG0384|consen 700 HRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHF 745 (1373)
T ss_pred ceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhc
Confidence 5999998754 33 66 99999999999999999999999998755
No 185
>PLN02363 phosphoribosylanthranilate isomerase
Probab=37.89 E-value=60 Score=26.94 Aligned_cols=34 Identities=15% Similarity=0.059 Sum_probs=29.9
Q ss_pred CeEEEEecccHHHH-HHhHHCCceEEEecCCCCCC
Q psy17636 180 GSLLIFVTKKCFEL-VNLIAKNYWLIQAVGILMCP 213 (222)
Q Consensus 180 ~~~IVF~nt~~~~l-~~L~~~g~~~~~lHg~~~q~ 213 (222)
.++-||+|...+++ ..+...|+.+.-|||+.+.+
T Consensus 101 ~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG~e~~~ 135 (256)
T PLN02363 101 KPVGVFVDDDANTILRAADSSDLELVQLHGNGSRA 135 (256)
T ss_pred cEEEEEeCCCHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 46999999998888 88999999999999988644
No 186
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=37.76 E-value=2e+02 Score=22.51 Aligned_cols=41 Identities=12% Similarity=-0.137 Sum_probs=27.7
Q ss_pred HHHHHHHHHhh-CCCCeEEEEecccHH-HH-HHhHHCCceEEEe
Q psy17636 166 LTWLTHNLVEF-LSTGSLLIFVTKKCF-EL-VNLIAKNYWLIQA 206 (222)
Q Consensus 166 ~~~L~~~l~~~-~~~~~~IVF~nt~~~-~l-~~L~~~g~~~~~l 206 (222)
.+.|+..+... ....++++++..... .+ ..|...|..+..+
T Consensus 108 ~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~ 151 (239)
T cd06578 108 SEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEV 151 (239)
T ss_pred HHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEE
Confidence 44566777665 344577777766554 88 9999988876544
No 187
>KOG0392|consensus
Probab=37.72 E-value=72 Score=32.66 Aligned_cols=60 Identities=22% Similarity=0.183 Sum_probs=42.7
Q ss_pred CchHHHHHHHHHhhC---------------CCCeEEEEecccHH--HH-HHhHHCCc-eE--EEecCCCCCChHHHhhcC
Q psy17636 163 TQKLTWLTHNLVEFL---------------STGSLLIFVTKKCF--EL-VNLIAKNY-WL--IQAVGILMCPKSPSRLSL 221 (222)
Q Consensus 163 ~~K~~~L~~~l~~~~---------------~~~~~IVF~nt~~~--~l-~~L~~~g~-~~--~~lHg~~~q~~R~~~L~~ 221 (222)
.-|+.+|-.+|.++. ...+++|||.-+.. -+ +.|.+..+ ++ ..|-|+.+..+|.+.-..
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 468888877776543 12489999998866 44 55655543 33 379999999999988765
Q ss_pred C
Q psy17636 222 V 222 (222)
Q Consensus 222 ~ 222 (222)
|
T Consensus 1389 F 1389 (1549)
T KOG0392|consen 1389 F 1389 (1549)
T ss_pred h
Confidence 5
No 188
>KOG0925|consensus
Probab=37.32 E-value=3.4e+02 Score=25.19 Aligned_cols=103 Identities=10% Similarity=0.125 Sum_probs=57.7
Q ss_pred HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhh---
Q psy17636 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEF--- 176 (222)
Q Consensus 100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--- 176 (222)
...+++++..- ++-.++..|||.... -...|+.|+-.+.+... .-++-+|-.-+..+.++..++.+.+.
T Consensus 179 mGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg~----~PvEi~Yt~e~erDylEaairtV~qih~~ 250 (699)
T KOG0925|consen 179 MGLLKEVVRNR-PDLKLVVMSATLDAE---KFQRYFGNAPLLAVPGT----HPVEIFYTPEPERDYLEAAIRTVLQIHMC 250 (699)
T ss_pred HHHHHHHHhhC-CCceEEEeecccchH---HHHHHhCCCCeeecCCC----CceEEEecCCCChhHHHHHHHHHHHHHhc
Confidence 44555555543 588999999998532 33567777777766541 12333333223344455444443332
Q ss_pred CCCCeEEEEecccHH--HH-HHhHH----C-----CceEEEecCCC
Q psy17636 177 LSTGSLLIFVTKKCF--EL-VNLIA----K-----NYWLIQAVGIL 210 (222)
Q Consensus 177 ~~~~~~IVF~nt~~~--~l-~~L~~----~-----g~~~~~lHg~~ 210 (222)
..+|-++||.....+ .. +.+.. . -.+|..||-.+
T Consensus 251 ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP~~ 296 (699)
T KOG0925|consen 251 EEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLYPAQ 296 (699)
T ss_pred cCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecCchh
Confidence 246789999987654 22 33321 1 25788888433
No 189
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=37.13 E-value=71 Score=24.32 Aligned_cols=44 Identities=11% Similarity=-0.015 Sum_probs=32.0
Q ss_pred EEEEcCCCchHHHHHHHHHhhCCC-CeEEEEecccHH--HH-HHhHHC
Q psy17636 156 VVINLPQTQKLTWLTHNLVEFLST-GSLLIFVTKKCF--EL-VNLIAK 199 (222)
Q Consensus 156 ~~~~~~~~~K~~~L~~~l~~~~~~-~~~IVF~nt~~~--~l-~~L~~~ 199 (222)
.|+++....+...+.+++.+.... .+++|.|.+... .| ..|-..
T Consensus 5 ~FYhL~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf 52 (154)
T PRK06646 5 SIYQTSDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTY 52 (154)
T ss_pred EEEEeCCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCC
Confidence 456667788888887877766544 589999977755 77 777654
No 190
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=36.94 E-value=67 Score=23.69 Aligned_cols=34 Identities=6% Similarity=-0.129 Sum_probs=24.3
Q ss_pred CCCeEEEEecc--c---HHHH-HHhHHCCce-EEEecCCCC
Q psy17636 178 STGSLLIFVTK--K---CFEL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt--~---~~~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
+..++||||++ . +..+ -.|+..|++ +..|.|+++
T Consensus 94 ~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 94 LDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred CCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 34689999975 1 2266 777888886 678888864
No 191
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=36.46 E-value=47 Score=22.75 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=27.9
Q ss_pred CCCeeEEEEEcCCCchHHHHHHHHHhhCC---CCeEEEEeccc
Q psy17636 150 NTDITQVVINLPQTQKLTWLTHNLVEFLS---TGSLLIFVTKK 189 (222)
Q Consensus 150 ~~~i~q~~~~~~~~~K~~~L~~~l~~~~~---~~~~IVF~nt~ 189 (222)
.+-+++....+...++...+...|.+..+ ..++-+|+|..
T Consensus 12 aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~s 54 (87)
T PF04110_consen 12 APILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNS 54 (87)
T ss_dssp ----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEE
T ss_pred CccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCc
Confidence 44578888889999999999999998876 46899999865
No 192
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=36.02 E-value=1.8e+02 Score=22.78 Aligned_cols=41 Identities=17% Similarity=0.085 Sum_probs=31.7
Q ss_pred HHHHhhCCC--CeEEEEecccHHHH-HHhHHCCceEEEecCCCC
Q psy17636 171 HNLVEFLST--GSLLIFVTKKCFEL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 171 ~~l~~~~~~--~~~IVF~nt~~~~l-~~L~~~g~~~~~lHg~~~ 211 (222)
..|.+..+. ..+-||+|...+.+ +.....|....-|||+-+
T Consensus 41 ~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~e~ 84 (203)
T cd00405 41 REIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDES 84 (203)
T ss_pred HHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCCCC
Confidence 344444444 68999999988877 777888999999999864
No 193
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=36.01 E-value=44 Score=28.61 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=27.1
Q ss_pred CCCeEEEEeccc--HHHH-HHhHHCCce-EEEecCCCCC
Q psy17636 178 STGSLLIFVTKK--CFEL-VNLIAKNYW-LIQAVGILMC 212 (222)
Q Consensus 178 ~~~~~IVF~nt~--~~~l-~~L~~~g~~-~~~lHg~~~q 212 (222)
+..+++|||++- +... ..|+..|++ +..|.|++..
T Consensus 170 kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~ 208 (314)
T PRK00142 170 KDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIIT 208 (314)
T ss_pred CcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHH
Confidence 456899999864 4455 888899995 8899999753
No 194
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=35.32 E-value=1.5e+02 Score=25.55 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=54.3
Q ss_pred HHHHHhhCCCCCeEEEEccc-cchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHH---hhCC
Q psy17636 103 VRSICDHVRPNRQTLLFSAT-FKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLV---EFLS 178 (222)
Q Consensus 103 l~~Il~~~~~~~Q~~lfSAT-~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~---~~~~ 178 (222)
+.+|.+.+.+...+++|+.. ++..--+-.+..+++...+.++........+......-+ .+....|+..+. ....
T Consensus 12 v~~l~~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lrg~a~~~~GKNtlm~~AL~~~~~~~~-~~~~~~ll~~~~~~~~~l~ 90 (323)
T PTZ00240 12 EERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKIVEKRAQAKK-ASAEAKLFNDQCEEKNLLS 90 (323)
T ss_pred HHHHHHHHHhCCEEEEEEecCCCcHHHHHHHHHhhCCcEEEEecHHHHHHHHhhcccccc-chhHHHHhhhhcccccccc
Confidence 44444444455577777765 444433444555565445555554322222222110000 111333322222 4455
Q ss_pred CCeEEEEecccHHHH-HHhHHCCceEEEecCCCC
Q psy17636 179 TGSLLIFVTKKCFEL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 179 ~~~~IVF~nt~~~~l-~~L~~~g~~~~~lHg~~~ 211 (222)
..-.+||||....++ ..|.....+..+=.|...
T Consensus 91 GnvgliFTn~~p~ev~~~l~~~k~~a~AraG~IA 124 (323)
T PTZ00240 91 GNTGLIFTNNEVQEITSVLDSHRVKAPARVGAIA 124 (323)
T ss_pred CCEEEEEeCCCHHHHHHHHHHcCCcccccCCCCC
Confidence 568999999987788 888877665555444443
No 195
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=35.13 E-value=80 Score=24.84 Aligned_cols=40 Identities=18% Similarity=0.040 Sum_probs=29.6
Q ss_pred HHhhCCCCeEEEEecccHHHH-HHhHHCCceEEEecCCCCC
Q psy17636 173 LVEFLSTGSLLIFVTKKCFEL-VNLIAKNYWLIQAVGILMC 212 (222)
Q Consensus 173 l~~~~~~~~~IVF~nt~~~~l-~~L~~~g~~~~~lHg~~~q 212 (222)
|....+...+-||+|...+++ ......+..+.-|||+.+.
T Consensus 43 l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e~~ 83 (197)
T PF00697_consen 43 LVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDESP 83 (197)
T ss_dssp HHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG-H
T ss_pred HHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCCCH
Confidence 333444458999999888888 8889999999999999843
No 196
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=34.41 E-value=72 Score=20.11 Aligned_cols=30 Identities=13% Similarity=-0.105 Sum_probs=16.1
Q ss_pred EEEEecccHH---HH-HHhHHCCceEEEecCCCC
Q psy17636 182 LLIFVTKKCF---EL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 182 ~IVF~nt~~~---~l-~~L~~~g~~~~~lHg~~~ 211 (222)
+.||..+.|. .+ ..|...|++...+.=+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~ 35 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD 35 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC
Confidence 4556644432 55 666666666655544443
No 197
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=34.25 E-value=1.1e+02 Score=26.27 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=25.3
Q ss_pred CeEEEEecc---cHHHH-HHhHHCCceEEEecCCCC
Q psy17636 180 GSLLIFVTK---KCFEL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 180 ~~~IVF~nt---~~~~l-~~L~~~g~~~~~lHg~~~ 211 (222)
.+++|||.+ +.... ..|...|+++..+.|++.
T Consensus 75 ~~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~ 110 (311)
T TIGR03167 75 PQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYK 110 (311)
T ss_pred CcEEEEECCCChHHHHHHHHHHHcCCCEEEecChHH
Confidence 359999953 33366 899999999999999874
No 198
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=33.54 E-value=35 Score=28.45 Aligned_cols=34 Identities=6% Similarity=-0.095 Sum_probs=26.1
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILMC 212 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~q 212 (222)
..++|++|++-.. .+ ..|+..|++ +..+.|++.+
T Consensus 231 ~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~e 268 (281)
T PRK11493 231 DRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSE 268 (281)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHH
Confidence 4589999987544 56 778888995 7899998753
No 199
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=33.35 E-value=83 Score=23.46 Aligned_cols=41 Identities=15% Similarity=-0.007 Sum_probs=28.3
Q ss_pred EcCCCchHHHHHHHHHhhCC-CCeEEEEecccHH--HH-HHhHHC
Q psy17636 159 NLPQTQKLTWLTHNLVEFLS-TGSLLIFVTKKCF--EL-VNLIAK 199 (222)
Q Consensus 159 ~~~~~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~--~l-~~L~~~ 199 (222)
......+...+..++.+... ..+++|.|.+... .| +.|-..
T Consensus 8 ~l~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~ 52 (142)
T PRK05728 8 HLTLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTF 52 (142)
T ss_pred ecCchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCC
Confidence 33456677777776666553 4699999977655 78 888654
No 200
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=33.05 E-value=95 Score=28.89 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=58.6
Q ss_pred HHHHH-CCCCCCCHHHHhHHHHHhCCCCCCHHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCC
Q psy17636 71 KALRK-CEYTSPTPIQAQAVPAALSGRDIIEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEA 149 (222)
Q Consensus 71 ~~l~~-~g~~~pTpIQ~~~ip~il~g~dvi~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~ 149 (222)
+.|++ .||.+++|+|.++|+.+++|+|++ +.+.|= .=+.++
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvl------------------v~~PTG--~GKTl~------------------ 44 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVL------------------VVMPTG--GGKSLC------------------ 44 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEE------------------EEcCCC--ccHhHH------------------
Confidence 44555 599999999999999999997752 222221 111111
Q ss_pred CCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhh
Q psy17636 150 NTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 150 ~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L 219 (222)
+++-.+ ...+.++|.+.++.- .- ..|+..|+.+..+||+++..++...+
T Consensus 45 ------------------y~lpal---~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~ 96 (591)
T TIGR01389 45 ------------------YQVPAL---LLKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIE 96 (591)
T ss_pred ------------------HHHHHH---HcCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH
Confidence 111111 124677888887754 44 77778899999999999888766543
No 201
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=33.01 E-value=1.1e+02 Score=26.86 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=33.5
Q ss_pred CchHHHHHHHHHhhCCCCeEEEEecccHH-------HH-HHhHHCCceEEEecCCCCCChHH
Q psy17636 163 TQKLTWLTHNLVEFLSTGSLLIFVTKKCF-------EL-VNLIAKNYWLIQAVGILMCPKSP 216 (222)
Q Consensus 163 ~~K~~~L~~~l~~~~~~~~~IVF~nt~~~-------~l-~~L~~~g~~~~~lHg~~~q~~R~ 216 (222)
..|...+.+++.+. +-.-+|.|++.-|+ .+ +.|++.|+++..|.||.+.. +.
T Consensus 299 ~~R~~~i~~lv~~~-~~DGVI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L~iE~D~~~~-~g 358 (377)
T TIGR03190 299 HTRYDHVLGLAKEY-NVQGAIFLQQKFCDPHEGDYPDLKRHLEANGIPTLFLEFDITNP-IG 358 (377)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEecccCCCcchhhhHHHHHHHHHCCCCEEEEecCCCCc-hH
Confidence 44666676655544 33344444443333 57 88888999999999999853 44
No 202
>KOG1000|consensus
Probab=32.94 E-value=1.3e+02 Score=27.83 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=35.1
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhh
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L 219 (222)
+.+.+|||....- .+ .++.+.|+...-+-|.-+...|.-.-
T Consensus 492 ~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~ 535 (689)
T KOG1000|consen 492 PRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLC 535 (689)
T ss_pred CceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHH
Confidence 4599999987654 88 99999999999999999999987543
No 203
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi
Probab=32.85 E-value=32 Score=21.32 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=12.5
Q ss_pred CCCeEEEEecccHHH
Q psy17636 178 STGSLLIFVTKKCFE 192 (222)
Q Consensus 178 ~~~~~IVF~nt~~~~ 192 (222)
++++++.|||+++..
T Consensus 24 ~Dgkv~~F~s~Kc~~ 38 (54)
T cd00472 24 NDGKVFRFCSSKCEK 38 (54)
T ss_pred cCCCEEEEECHHHHH
Confidence 367999999999873
No 204
>PF14053 DUF4248: Domain of unknown function (DUF4248)
Probab=32.01 E-value=78 Score=20.60 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHCCCCC----CCHHHHhHHHHHh
Q psy17636 64 GFDEVLMKALRKCEYTS----PTPIQAQAVPAAL 93 (222)
Q Consensus 64 ~l~~~l~~~l~~~g~~~----pTpIQ~~~ip~il 93 (222)
..++.|.+.|.+.||.. .||-|.+.|=..|
T Consensus 33 ~~~~~L~~~L~~~Gy~~~~r~~TP~QV~lIv~~L 66 (69)
T PF14053_consen 33 RRNPELLEELEATGYHPRQRSFTPRQVRLIVRYL 66 (69)
T ss_pred HHCHHHHHHHHHcCCCCCCEecCHHHHHHHHHHc
Confidence 46899999999999875 7899988775443
No 205
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=31.91 E-value=1.2e+02 Score=28.84 Aligned_cols=42 Identities=5% Similarity=-0.201 Sum_probs=32.0
Q ss_pred CCCeEEEEecccH--H----HH-HHhHHCCceEEEecCCCCCChHHHhh
Q psy17636 178 STGSLLIFVTKKC--F----EL-VNLIAKNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 178 ~~~~~IVF~nt~~--~----~l-~~L~~~g~~~~~lHg~~~q~~R~~~L 219 (222)
...+++|-+.|+. . ++ ..+...|+++.++.|+++.++|..++
T Consensus 143 ~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y 191 (656)
T PRK12898 143 AGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY 191 (656)
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc
Confidence 3458888888772 2 55 66677899999999999988776554
No 206
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=31.88 E-value=1.8e+02 Score=20.19 Aligned_cols=33 Identities=6% Similarity=-0.031 Sum_probs=20.1
Q ss_pred CCeEEEEec-c--cHH----HH-HHhHH----CCc-eEEEecCCCC
Q psy17636 179 TGSLLIFVT-K--KCF----EL-VNLIA----KNY-WLIQAVGILM 211 (222)
Q Consensus 179 ~~~~IVF~n-t--~~~----~l-~~L~~----~g~-~~~~lHg~~~ 211 (222)
..+++++|+ + +.. .+ ..|.. .|+ ++..|.|++.
T Consensus 62 ~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~ 107 (113)
T cd01531 62 KDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFN 107 (113)
T ss_pred CCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHH
Confidence 458899997 3 222 23 33332 254 7899999875
No 207
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=31.37 E-value=1.2e+02 Score=26.39 Aligned_cols=35 Identities=9% Similarity=-0.073 Sum_probs=27.6
Q ss_pred CCCeEEEEec-c--cHHHH-HHhHHCCceEEEecCCCCC
Q psy17636 178 STGSLLIFVT-K--KCFEL-VNLIAKNYWLIQAVGILMC 212 (222)
Q Consensus 178 ~~~~~IVF~n-t--~~~~l-~~L~~~g~~~~~lHg~~~q 212 (222)
+..+++|||. . +...+ ..|...|+++..|.|++..
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~a 125 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKA 125 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHH
Confidence 3568999995 3 33466 8899999999999999754
No 208
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=30.80 E-value=73 Score=25.38 Aligned_cols=38 Identities=18% Similarity=0.026 Sum_probs=21.5
Q ss_pred HHHHHHHhh-CCCCeEEEEecccHH-HH-HHhHHCCceEEE
Q psy17636 168 WLTHNLVEF-LSTGSLLIFVTKKCF-EL-VNLIAKNYWLIQ 205 (222)
Q Consensus 168 ~L~~~l~~~-~~~~~~IVF~nt~~~-~l-~~L~~~g~~~~~ 205 (222)
.|+..|.+. ....+++|.+..... .+ +.|.+.|..+..
T Consensus 113 ~l~~~l~~~~~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~ 153 (249)
T PRK05928 113 ELLLELPELLLKGKRVLYLRGNGGREVLGDTLEERGAEVDE 153 (249)
T ss_pred HHHHhChhhhcCCCEEEEECCCCCHHHHHHHHHHCCCEEeE
Confidence 344444443 234566666655544 67 888887765543
No 209
>KOG2340|consensus
Probab=30.73 E-value=15 Score=33.79 Aligned_cols=95 Identities=16% Similarity=0.217 Sum_probs=57.9
Q ss_pred CeEEEEccccchHHHHHHHHhcCCC-cEEEeCC------CCCCCCCeeEEEE--EcCC-----CchHHHHHHHHHhhCC-
Q psy17636 114 RQTLLFSATFKKRIEKLARDVLTDP-IKIVQGD------IGEANTDITQVVI--NLPQ-----TQKLTWLTHNLVEFLS- 178 (222)
Q Consensus 114 ~Q~~lfSAT~~~~v~~l~~~~l~~p-~~i~v~~------~~~~~~~i~q~~~--~~~~-----~~K~~~L~~~l~~~~~- 178 (222)
|||++||+-..+.+..+...++.|. -.|.... .+...-.|.|.+. .|++ ..++.+....+.-...
T Consensus 470 rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k 549 (698)
T KOG2340|consen 470 RQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIK 549 (698)
T ss_pred HHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhcc
Confidence 7999999999999888888887753 2222211 1112222344332 3333 2455554443332221
Q ss_pred --CCeEEEEecccHH--HH-HHhHHCCceEEEecC
Q psy17636 179 --TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVG 208 (222)
Q Consensus 179 --~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg 208 (222)
..-++|+..+=.+ .+ +++++.++....+|-
T Consensus 550 ~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~E 584 (698)
T KOG2340|consen 550 RTESGILIYIPSYFDFVRVRNYMKKEEISFVMINE 584 (698)
T ss_pred cccCceEEEecchhhHHHHHHHhhhhhcchHHHhh
Confidence 1357999999877 88 999998887776664
No 210
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=29.67 E-value=1.6e+02 Score=19.91 Aligned_cols=43 Identities=16% Similarity=-0.014 Sum_probs=27.2
Q ss_pred HHHHHHHHHhh----CCCCeEEEEecccHHHH-HHhHHCCceEEEecC
Q psy17636 166 LTWLTHNLVEF----LSTGSLLIFVTKKCFEL-VNLIAKNYWLIQAVG 208 (222)
Q Consensus 166 ~~~L~~~l~~~----~~~~~~IVF~nt~~~~l-~~L~~~g~~~~~lHg 208 (222)
...|+..|... ..+...-.+++..-..+ +.|...|+++.+..|
T Consensus 24 DP~LM~~LgA~~~~~lgn~f~ey~~~~~Pr~VLnKLE~~G~kVvsmtg 71 (83)
T PF06399_consen 24 DPELMAYLGAKKRTPLGNNFKEYHVDDPPRVVLNKLEKMGYKVVSMTG 71 (83)
T ss_dssp -HHHHHHHT-EEE--TT-SS-EEEESS-HHHHHHHHHHTTEEEEEEEE
T ss_pred CHHHHHHhcCceeccccCcceEEEcCCChHHHHHHHHhcCeEEEEEec
Confidence 44566666543 23345666776666677 999999999998766
No 211
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=29.66 E-value=74 Score=27.67 Aligned_cols=33 Identities=9% Similarity=0.100 Sum_probs=26.2
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
..+++|+|++-.. .. ..|+..|+. +..+.|++.
T Consensus 314 ~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~ 350 (355)
T PRK05597 314 GDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIE 350 (355)
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHH
Confidence 4589999987533 66 889999996 788999984
No 212
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=29.65 E-value=2.2e+02 Score=27.97 Aligned_cols=30 Identities=13% Similarity=-0.047 Sum_probs=21.4
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCceEEEecC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVG 208 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg 208 (222)
..++++|+++|... .+ ..|....+.+ ...|
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg 678 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQE 678 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeC
Confidence 35899999998876 67 7776665555 4445
No 213
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=29.42 E-value=34 Score=25.20 Aligned_cols=14 Identities=43% Similarity=0.788 Sum_probs=12.1
Q ss_pred CCCeEEEEecccHH
Q psy17636 178 STGSLLIFVTKKCF 191 (222)
Q Consensus 178 ~~~~~IVF~nt~~~ 191 (222)
+.++++.|||+|+.
T Consensus 25 ~DGkvf~FcssKC~ 38 (131)
T PRK14891 25 KDGTVLHFVDSKCE 38 (131)
T ss_pred cCCCEEEEecHHHH
Confidence 35799999999987
No 214
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=28.98 E-value=64 Score=32.42 Aligned_cols=42 Identities=29% Similarity=0.320 Sum_probs=26.4
Q ss_pred hCCCCCC-----------HHHHHHHHhhCC-CCCeEEEEccccchHHHH-HHHHh
Q psy17636 93 LSGRDII-----------EPQVRSICDHVR-PNRQTLLFSATFKKRIEK-LARDV 134 (222)
Q Consensus 93 l~g~dvi-----------~~~l~~Il~~~~-~~~Q~~lfSAT~~~~v~~-l~~~~ 134 (222)
+.|+++| ...|..++.-+. -...+++.|||+|+.+.. +...|
T Consensus 592 La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~~Ay 646 (1110)
T TIGR02562 592 LMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLFRAY 646 (1110)
T ss_pred hcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHH
Confidence 5677777 344444444221 256799999999998554 44444
No 215
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.62 E-value=1e+02 Score=27.77 Aligned_cols=85 Identities=20% Similarity=0.158 Sum_probs=57.2
Q ss_pred CCCCCCCHHHHhHHHHHhCCCCCCHHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeE
Q psy17636 76 CEYTSPTPIQAQAVPAALSGRDIIEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQ 155 (222)
Q Consensus 76 ~g~~~pTpIQ~~~ip~il~g~dvi~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q 155 (222)
.||..|+|+|.++||.+++|+|+ ++.+.|= .=+.++
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dv------------------lv~apTG--sGKTl~------------------------ 42 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDC------------------FVVMPTG--GGKSLC------------------------ 42 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCE------------------EEEcCCC--CcHhHH------------------------
Confidence 49999999999999999999774 2333331 111111
Q ss_pred EEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhh
Q psy17636 156 VVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 156 ~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L 219 (222)
+++-.+. ..+.+||.+.++.- .. ..|...|+++..++|+.+..++...+
T Consensus 43 ------------y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~ 94 (470)
T TIGR00614 43 ------------YQLPALC---SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVL 94 (470)
T ss_pred ------------HHHHHHH---cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH
Confidence 1111121 24678888888854 45 77788899999999998877665443
No 216
>PRK07411 hypothetical protein; Validated
Probab=28.40 E-value=94 Score=27.42 Aligned_cols=37 Identities=11% Similarity=-0.130 Sum_probs=28.5
Q ss_pred CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCC
Q psy17636 177 LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCP 213 (222)
Q Consensus 177 ~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~ 213 (222)
.+..+++|+|.+-.. .. ..|+..|++...+.|++..=
T Consensus 340 ~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~~~l~GG~~~W 379 (390)
T PRK07411 340 LNGHRLIAHCKMGGRSAKALGILKEAGIEGTNVKGGITAW 379 (390)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHHcCCCeEEecchHHHH
Confidence 345689999976544 55 88999999988899987543
No 217
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=27.58 E-value=95 Score=22.96 Aligned_cols=45 Identities=9% Similarity=-0.015 Sum_probs=22.9
Q ss_pred EEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHHCCc
Q psy17636 157 VINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIAKNY 201 (222)
Q Consensus 157 ~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~~g~ 201 (222)
|+...+......+.+++.+.. ...+++|+|.+... .| +.|-...-
T Consensus 6 Fy~l~~~~~~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~ 54 (137)
T PF04364_consen 6 FYHLSSDDLERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSP 54 (137)
T ss_dssp EEE-S----HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSST
T ss_pred EEEcCCCcHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCC
Confidence 334444333455555555544 34699999987755 88 88876543
No 218
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=27.57 E-value=1.2e+02 Score=25.91 Aligned_cols=34 Identities=9% Similarity=-0.046 Sum_probs=25.4
Q ss_pred CCCeEEEEeccc--H-HHH-HHhHHCCce-EEEecCCCC
Q psy17636 178 STGSLLIFVTKK--C-FEL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~--~-~~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
+..++||||.+- . ..+ ..|+..|++ +..|.|++.
T Consensus 102 ~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~ 140 (320)
T PLN02723 102 NKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLP 140 (320)
T ss_pred CCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHH
Confidence 345899999653 2 267 889999995 889999864
No 219
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=27.49 E-value=1.4e+02 Score=29.01 Aligned_cols=42 Identities=0% Similarity=-0.181 Sum_probs=32.4
Q ss_pred CCeEEEEeccc--HH----HH-HHhHHCCceEEEecCCCCCChHHHhhc
Q psy17636 179 TGSLLIFVTKK--CF----EL-VNLIAKNYWLIQAVGILMCPKSPSRLS 220 (222)
Q Consensus 179 ~~~~IVF~nt~--~~----~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~ 220 (222)
..++.|-+.|. +. ++ ..+...|+++.++.|+++.++|..++.
T Consensus 97 G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~ 145 (745)
T TIGR00963 97 GKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA 145 (745)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC
Confidence 45788888776 22 55 666777999999999999988877653
No 220
>KOG0389|consensus
Probab=26.88 E-value=1.6e+02 Score=28.82 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=45.2
Q ss_pred CchHHHHHHHHHhhCCC-CeEEEEec-ccHH-HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 163 TQKLTWLTHNLVEFLST-GSLLIFVT-KKCF-EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 163 ~~K~~~L~~~l~~~~~~-~~~IVF~n-t~~~-~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.-|...|-.+|.+.... .+++||-. |.-- -| ..|...|++..-|-|.-.-..|...+..|
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~F 823 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEF 823 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhh
Confidence 35667776666655433 69999975 3322 55 78889999999999999999999887765
No 221
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=26.82 E-value=2.4e+02 Score=21.93 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=18.9
Q ss_pred HHHHhhCCCCeEEEEecccHH-HH-HHhHHCCceEEEecCCCCCCh
Q psy17636 171 HNLVEFLSTGSLLIFVTKKCF-EL-VNLIAKNYWLIQAVGILMCPK 214 (222)
Q Consensus 171 ~~l~~~~~~~~~IVF~nt~~~-~l-~~L~~~g~~~~~lHg~~~q~~ 214 (222)
..|.... ...+|++.|.-= .+ ..+++.|++++.+.|.|+...
T Consensus 89 rfl~~~~--P~~~i~~EtElWPnll~~a~~~~ip~~LvNarls~~s 132 (186)
T PF04413_consen 89 RFLDHWR--PDLLIWVETELWPNLLREAKRRGIPVVLVNARLSERS 132 (186)
T ss_dssp HHHHHH----SEEEEES----HHHHHH-----S-EEEEEE------
T ss_pred HHHHHhC--CCEEEEEccccCHHHHHHHhhcCCCEEEEeeeecccc
Confidence 4444442 488888888655 77 888999999999999998764
No 222
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=26.75 E-value=80 Score=26.97 Aligned_cols=34 Identities=9% Similarity=-0.106 Sum_probs=25.9
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
+..++|+||++-.. .+ ..|+..|++ +..+.|++.
T Consensus 268 ~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~ 305 (320)
T PLN02723 268 LDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWT 305 (320)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH
Confidence 34689999988543 55 777888985 778999875
No 223
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=26.58 E-value=1.4e+02 Score=28.25 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=28.3
Q ss_pred CCeEEEEecccHH--HH-HHh----HH-CCceEEEecCCCCCChHHHhh
Q psy17636 179 TGSLLIFVTKKCF--EL-VNL----IA-KNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L----~~-~g~~~~~lHg~~~q~~R~~~L 219 (222)
..++||.|.|+.- ++ ..+ .. .|+.+..+||+.+...+...|
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l 122 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh
Confidence 3589999999843 33 332 22 389999999998776655544
No 224
>KOG0953|consensus
Probab=26.40 E-value=1.2e+02 Score=28.44 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=33.5
Q ss_pred CCCeEEEEecccHH-HH-HHhHHCCce-EEEecCCCCCChHHHhhcCC
Q psy17636 178 STGSLLIFVTKKCF-EL-VNLIAKNYW-LIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 178 ~~~~~IVF~nt~~~-~l-~~L~~~g~~-~~~lHg~~~q~~R~~~L~~~ 222 (222)
.+|-+||=++.+.= .+ ..+.+.|.. ++.+.|+++.+.|...=++|
T Consensus 356 k~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~F 403 (700)
T KOG0953|consen 356 KPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALF 403 (700)
T ss_pred CCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHh
Confidence 35667776655544 77 777777665 99999999999998776654
No 225
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=26.15 E-value=3.3e+02 Score=26.10 Aligned_cols=30 Identities=10% Similarity=0.029 Sum_probs=19.3
Q ss_pred CCeEEEEecccHH--HH-HHhHH-CCceEEEecCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIA-KNYWLIQAVGI 209 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~-~g~~~~~lHg~ 209 (222)
.+.++||++|... .+ ..|.. .++. ...+|+
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~ 567 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD 567 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC
Confidence 4568999988766 66 76653 3444 444664
No 226
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=26.00 E-value=3.2e+02 Score=24.80 Aligned_cols=38 Identities=8% Similarity=-0.157 Sum_probs=32.1
Q ss_pred CCCCeEEEEecccHHHH-HHhHHCCceEEEecCCCCCCh
Q psy17636 177 LSTGSLLIFVTKKCFEL-VNLIAKNYWLIQAVGILMCPK 214 (222)
Q Consensus 177 ~~~~~~IVF~nt~~~~l-~~L~~~g~~~~~lHg~~~q~~ 214 (222)
.+-.++-||+|...+.+ ......+..+.-|||+-+.+.
T Consensus 305 l~v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~e~~~~ 343 (454)
T PRK09427 305 APLRYVGVFRNADIEDIVDIAKQLSLAAVQLHGDEDQAY 343 (454)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCCCCHHH
Confidence 33568999999998888 888999999999999887554
No 227
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=25.40 E-value=1e+02 Score=20.70 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=20.4
Q ss_pred CCCeEEEEecc-----cH---HHH-HHhHHCCceEEEe
Q psy17636 178 STGSLLIFVTK-----KC---FEL-VNLIAKNYWLIQA 206 (222)
Q Consensus 178 ~~~~~IVF~nt-----~~---~~l-~~L~~~g~~~~~l 206 (222)
+..+++||..+ .| ..+ ..|...|++...+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~i 43 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTF 43 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEE
Confidence 35699999863 22 277 8888888876655
No 228
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=25.05 E-value=1.2e+02 Score=25.29 Aligned_cols=34 Identities=12% Similarity=-0.032 Sum_probs=24.7
Q ss_pred CCCeEEEEecccH--H-HH-HHhHHCCce-EEEecCCCC
Q psy17636 178 STGSLLIFVTKKC--F-EL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~--~-~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
+..++||||++-. . .+ ..|...|++ +..|.|+++
T Consensus 86 ~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~ 124 (281)
T PRK11493 86 QDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLA 124 (281)
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHH
Confidence 3468999997532 2 56 778888986 677888764
No 229
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=24.46 E-value=1.5e+02 Score=20.26 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=22.5
Q ss_pred HhhCCCCeEEEEecc------c--HHHH-HHhHHCCceEEEe
Q psy17636 174 VEFLSTGSLLIFVTK------K--CFEL-VNLIAKNYWLIQA 206 (222)
Q Consensus 174 ~~~~~~~~~IVF~nt------~--~~~l-~~L~~~g~~~~~l 206 (222)
.+..+..+++||..+ + +..+ ..|...|++...+
T Consensus 6 ~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~ 47 (97)
T TIGR00365 6 KEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYV 47 (97)
T ss_pred HHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEE
Confidence 334456799999752 2 2377 8899998876655
No 230
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=24.45 E-value=1.1e+02 Score=28.84 Aligned_cols=42 Identities=14% Similarity=0.003 Sum_probs=32.5
Q ss_pred CCeEEEEecccH---HHHHHhHHCCceEEEecCCCCCChHHHhhc
Q psy17636 179 TGSLLIFVTKKC---FELVNLIAKNYWLIQAVGILMCPKSPSRLS 220 (222)
Q Consensus 179 ~~~~IVF~nt~~---~~l~~L~~~g~~~~~lHg~~~q~~R~~~L~ 220 (222)
.|-|||-..=.. +++..|+..|++++++|+.++.++|...+.
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~ 101 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLN 101 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHH
Confidence 467777665432 255788899999999999999999987764
No 231
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=24.40 E-value=3.7e+02 Score=21.41 Aligned_cols=88 Identities=16% Similarity=0.041 Sum_probs=47.8
Q ss_pred CCCeEEEEccccchHHHHHHHHhcCCCcEE---EeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCC-CeEEEEec
Q psy17636 112 PNRQTLLFSATFKKRIEKLARDVLTDPIKI---VQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLST-GSLLIFVT 187 (222)
Q Consensus 112 ~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i---~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~-~~~IVF~n 187 (222)
...+++++||++..-++.+++.+--+...- .+.. +..... -.-..|..+.|...|.+++....-. ..++-+--
T Consensus 92 ~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~d-G~ltG~--v~g~~~~~~~K~~~l~~~~~~~g~~~~~~~a~gD 168 (212)
T COG0560 92 AGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDD-GKLTGR--VVGPICDGEGKAKALRELAAELGIPLEETVAYGD 168 (212)
T ss_pred CCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeC-CEEece--eeeeecCcchHHHHHHHHHHHcCCCHHHeEEEcC
Confidence 358999999999888888888764443221 1111 111111 1223567788998887766543222 23443333
Q ss_pred ccHHHHHHhHHCCceE
Q psy17636 188 KKCFELVNLIAKNYWL 203 (222)
Q Consensus 188 t~~~~l~~L~~~g~~~ 203 (222)
+..+ +-+|...|.++
T Consensus 169 s~nD-lpml~~ag~~i 183 (212)
T COG0560 169 SAND-LPMLEAAGLPI 183 (212)
T ss_pred chhh-HHHHHhCCCCe
Confidence 4433 33444555553
No 232
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=23.82 E-value=4.3e+02 Score=22.02 Aligned_cols=65 Identities=18% Similarity=0.356 Sum_probs=37.7
Q ss_pred hcCCCcEEEeCCCC--CCCCCeeEEEEEcCCCchHHHHHHHHHhhCC-CCeEEEEecccHH--HH-HHhHHCCc
Q psy17636 134 VLTDPIKIVQGDIG--EANTDITQVVINLPQTQKLTWLTHNLVEFLS-TGSLLIFVTKKCF--EL-VNLIAKNY 201 (222)
Q Consensus 134 ~l~~p~~i~v~~~~--~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~--~l-~~L~~~g~ 201 (222)
.+.|.+.+.+++.. ....++...+.-+++ =+++| +.+.+..+ .+.+++|+.+..+ .+ ..|++.|+
T Consensus 143 ~l~d~v~~~~~Dv~~~~~~~~vDav~LDmp~--PW~~l-e~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 143 GLGDRVTLKLGDVREGIDEEDVDAVFLDLPD--PWNVL-EHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred ccccceEEEeccccccccccccCEEEEcCCC--hHHHH-HHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 44566666655433 223345555554554 34444 44544443 4678888888766 67 88888876
No 233
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=23.44 E-value=1.8e+02 Score=26.05 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=27.9
Q ss_pred CeEEEEecccHH--HH-HHhHH-----CCceEEEecCCCCCChHHHhh
Q psy17636 180 GSLLIFVTKKCF--EL-VNLIA-----KNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 180 ~~~IVF~nt~~~--~l-~~L~~-----~g~~~~~lHg~~~q~~R~~~L 219 (222)
.+++|.|+|+.- ++ ..++. .++++..++|+.+.......|
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l 120 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSL 120 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHh
Confidence 379999999854 44 44332 278999999999876554443
No 234
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=23.39 E-value=66 Score=24.50 Aligned_cols=28 Identities=7% Similarity=-0.080 Sum_probs=17.5
Q ss_pred EEecccHH----HH-HHhHHCCceEEEecCCCC
Q psy17636 184 IFVTKKCF----EL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 184 VF~nt~~~----~l-~~L~~~g~~~~~lHg~~~ 211 (222)
.|||.+.. .+ ..|...+.+-+.||.+-+
T Consensus 23 WFCNg~~~~s~SHIv~HLv~srh~ev~LH~~s~ 55 (152)
T PF09416_consen 23 WFCNGRGNTSGSHIVNHLVRSRHKEVSLHPDSP 55 (152)
T ss_dssp EEES--TTSSS-HHHHHHHHHT---EEE-TTST
T ss_pred EeecCCCCCcccHHHHHHHHccCCceeeCCCCC
Confidence 68987743 88 999999999999998643
No 235
>PF09711 Cas_Csn2: CRISPR-associated protein (Cas_Csn2); InterPro: IPR010146 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents the Csn2 family of Cas proteins, which are found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.; PDB: 3TOC_A 3QHQ_A 3S5U_C.
Probab=22.95 E-value=3e+02 Score=21.70 Aligned_cols=45 Identities=22% Similarity=0.121 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhhCCCCeEEEEeccc-----HH--HH-HHhHHCCceEEEecCCC
Q psy17636 165 KLTWLTHNLVEFLSTGSLLIFVTKK-----CF--EL-VNLIAKNYWLIQAVGIL 210 (222)
Q Consensus 165 K~~~L~~~l~~~~~~~~~IVF~nt~-----~~--~l-~~L~~~g~~~~~lHg~~ 210 (222)
|.-..++.... ....+++||+|-+ .+ ++ +.....++++..+-+..
T Consensus 117 klieyl~v~~~-L~~kKllvfVNl~~YLT~eEl~el~e~i~~~~i~VL~IE~r~ 169 (188)
T PF09711_consen 117 KLIEYLKVFSE-LLKKKLLVFVNLRSYLTEEELQELYEYIKYNKIKVLFIENRK 169 (188)
T ss_dssp HHHHHHHHHHH--TT--EEEEESGGGGS-HHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred HHHHHHHHHHH-HcCCCEEEEEchHHhcCHHHHHHHHHHHHHhCCeEEEEeccc
Confidence 33333343333 3467999999955 33 77 88888999999887643
No 236
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=22.69 E-value=1.3e+02 Score=26.38 Aligned_cols=32 Identities=6% Similarity=0.024 Sum_probs=25.6
Q ss_pred CeEEEEecccHH--HH-HHhHHCCce--EEEecCCCC
Q psy17636 180 GSLLIFVTKKCF--EL-VNLIAKNYW--LIQAVGILM 211 (222)
Q Consensus 180 ~~~IVF~nt~~~--~l-~~L~~~g~~--~~~lHg~~~ 211 (222)
.+++|+|.+=.+ .. ..|+..|++ +..+.|+|.
T Consensus 333 ~~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 333 DNVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred CcEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 489999986533 56 899999997 688999985
No 237
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=22.13 E-value=2.2e+02 Score=28.31 Aligned_cols=44 Identities=5% Similarity=-0.165 Sum_probs=32.9
Q ss_pred CCCCeEEEEeccc--H--H--HH-HHhHHCCceEEEecCCCCCChHHHhhc
Q psy17636 177 LSTGSLLIFVTKK--C--F--EL-VNLIAKNYWLIQAVGILMCPKSPSRLS 220 (222)
Q Consensus 177 ~~~~~~IVF~nt~--~--~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~ 220 (222)
....++-|.+.+. + + ++ ..+...|+++.++.|+++.++|..++.
T Consensus 121 l~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~ 171 (913)
T PRK13103 121 LSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA 171 (913)
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc
Confidence 3345666666443 2 2 77 888888999999999999999988764
No 238
>KOG0339|consensus
Probab=22.03 E-value=1.2e+02 Score=28.13 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=29.5
Q ss_pred CCeEEEE-ecccHH--HH----HHh-HHCCceEEEecCCCCCChHHHhhc
Q psy17636 179 TGSLLIF-VTKKCF--EL----VNL-IAKNYWLIQAVGILMCPKSPSRLS 220 (222)
Q Consensus 179 ~~~~IVF-~nt~~~--~l----~~L-~~~g~~~~~lHg~~~q~~R~~~L~ 220 (222)
.+++.|. |.|+.- ++ +.| +..|+.++++||+++.-+-.+.|.
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk 344 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK 344 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh
Confidence 3566554 578743 32 444 667999999999999887777664
No 239
>TIGR02679 conserved hypothetical protein TIGR02679. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=21.92 E-value=3.3e+02 Score=24.09 Aligned_cols=54 Identities=19% Similarity=0.049 Sum_probs=33.1
Q ss_pred EEEEcCCCchHHHHHHHHHhhCCCCeEEEEecc---cHH-HH-HHhHHCCceEEEecCCCCCC
Q psy17636 156 VVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTK---KCF-EL-VNLIAKNYWLIQAVGILMCP 213 (222)
Q Consensus 156 ~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt---~~~-~l-~~L~~~g~~~~~lHg~~~q~ 213 (222)
.++.|++..=+..+ +.+.......+|.++- .+. .+ ..|...|..+ .+|||++..
T Consensus 252 ~V~vvENp~vf~~~---~~~~~~~~~~lIct~G~p~~a~~~LL~~L~~~g~~l-~YhGDfD~~ 310 (385)
T TIGR02679 252 RVYVVENPNVLAIA---LDRLGPRCAPLVCTDGQPNAAQIKLLDLLAAAGARL-YYHGDFDWP 310 (385)
T ss_pred eEEEEecHHHHHHH---HHhcCCCCceEEECCCcchHHHHHHHHHHHhcCCeE-EEecCCChh
Confidence 46677765444333 2222222235666653 333 67 8898999887 999999876
No 240
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=21.86 E-value=35 Score=21.25 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=8.2
Q ss_pred CcCCCCCC-HHHHHHHHHCCCCC
Q psy17636 59 SFGHFGFD-EVLMKALRKCEYTS 80 (222)
Q Consensus 59 ~f~~l~l~-~~l~~~l~~~g~~~ 80 (222)
.|..||++ +.++++|+++|+..
T Consensus 15 ~F~~mGF~~dkVvevlrrlgik~ 37 (55)
T PF09288_consen 15 QFENMGFERDKVVEVLRRLGIKS 37 (55)
T ss_dssp HHHHHT--HHHHHHHHHHS--SS
T ss_pred HHHHcCCcHHHHHHHHHHhCCCC
Confidence 34444444 33444555555444
No 241
>PF13245 AAA_19: Part of AAA domain
Probab=21.86 E-value=1.3e+02 Score=19.70 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=28.3
Q ss_pred CCCchHHHHHHHHHhhC-----CCCeEEEEecccHH--HH-HHhHHCCce-EEEecC
Q psy17636 161 PQTQKLTWLTHNLVEFL-----STGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVG 208 (222)
Q Consensus 161 ~~~~K~~~L~~~l~~~~-----~~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg 208 (222)
+..-|-..+...+.... ...+++|.+.|+.. .+ +.| ..|.. +..+|+
T Consensus 19 pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl-~~~~~~~~T~h~ 74 (76)
T PF13245_consen 19 PGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL-GLGVPFAMTIHS 74 (76)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH-cCCCcchhhHHH
Confidence 44677766655554433 14567777767644 78 777 44454 667765
No 242
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=21.73 E-value=1.9e+02 Score=26.59 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=29.0
Q ss_pred EEEEecccHH--HH-----HHhHHC-CceEEEecCCCCCChHHHhhc
Q psy17636 182 LLIFVTKKCF--EL-----VNLIAK-NYWLIQAVGILMCPKSPSRLS 220 (222)
Q Consensus 182 ~IVF~nt~~~--~l-----~~L~~~-g~~~~~lHg~~~q~~R~~~L~ 220 (222)
+||.+.||.- ++ ..-... ++.++.+.|+++...+...|.
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~ 148 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK 148 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh
Confidence 9999999943 33 223334 688999999999888777665
No 243
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=21.66 E-value=2.3e+02 Score=27.68 Aligned_cols=42 Identities=2% Similarity=-0.122 Sum_probs=32.1
Q ss_pred CCCeEEEEecccH--H----HH-HHhHHCCceEEEecCCCC-CChHHHhh
Q psy17636 178 STGSLLIFVTKKC--F----EL-VNLIAKNYWLIQAVGILM-CPKSPSRL 219 (222)
Q Consensus 178 ~~~~~IVF~nt~~--~----~l-~~L~~~g~~~~~lHg~~~-q~~R~~~L 219 (222)
....+.|-+.|+. . ++ ..+...|++++.+.|+++ .++|...+
T Consensus 118 ~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y 167 (790)
T PRK09200 118 EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY 167 (790)
T ss_pred cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc
Confidence 3557888887762 2 66 777888999999999999 77776544
No 244
>KOG3439|consensus
Probab=21.41 E-value=3.2e+02 Score=19.66 Aligned_cols=50 Identities=22% Similarity=0.374 Sum_probs=36.8
Q ss_pred cEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCC---CCeEEEEeccc
Q psy17636 139 IKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLS---TGSLLIFVTKK 189 (222)
Q Consensus 139 ~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~---~~~~IVF~nt~ 189 (222)
+.|.....+. .+-++.....++..++...+..+|++.++ ..+..+|+|..
T Consensus 31 V~i~l~aiG~-~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~s 83 (116)
T KOG3439|consen 31 VQIRLRAIGD-APILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNS 83 (116)
T ss_pred EEEEEeccCC-CcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCc
Confidence 4444444433 34578888888889999988888888776 67999999865
No 245
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=21.21 E-value=2.6e+02 Score=27.44 Aligned_cols=59 Identities=7% Similarity=0.022 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHHH----HHhCCCCCC-------H---HHHHHHHhhCCCCCeEEEEccccc
Q psy17636 65 FDEVLMKALRKCEYTSPTPIQAQAVP----AALSGRDII-------E---PQVRSICDHVRPNRQTLLFSATFK 124 (222)
Q Consensus 65 l~~~l~~~l~~~g~~~pTpIQ~~~ip----~il~g~dvi-------~---~~l~~Il~~~~~~~Q~~lfSAT~~ 124 (222)
+.+.+...+...||+ +.|.|.+.+. .+.+|++++ + .-+--.+.....+.+++..++|..
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~~~vvi~t~t~~ 303 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITEKPVVISTNTKV 303 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCCCeEEEEeCcHH
Confidence 445677788888997 7899998666 555788887 1 122222222223557777777754
No 246
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=20.98 E-value=1.7e+02 Score=23.06 Aligned_cols=41 Identities=20% Similarity=0.078 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhCCCCeEEEEecccHH-HH-HHhHHCCceEEEe
Q psy17636 166 LTWLTHNLVEFLSTGSLLIFVTKKCF-EL-VNLIAKNYWLIQA 206 (222)
Q Consensus 166 ~~~L~~~l~~~~~~~~~IVF~nt~~~-~l-~~L~~~g~~~~~l 206 (222)
-..|.+.|.....++++++++..... .+ ..|+..|+.+..+
T Consensus 104 s~~L~~~l~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~ 146 (231)
T PF02602_consen 104 SEGLAELLKEQLRGKRVLILRGEGGRPDLPEKLREAGIEVTEV 146 (231)
T ss_dssp HHHHHGGHHHCCTTEEEEEEESSSSCHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHhhCCCCeEEEEcCCCccHHHHHHHHHCCCeEEEE
Confidence 34555666654445677777755444 78 8888888776543
No 247
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.97 E-value=1.5e+02 Score=19.02 Aligned_cols=21 Identities=10% Similarity=-0.026 Sum_probs=11.8
Q ss_pred EEEecccHH-HH-HHhHHCCceE
Q psy17636 183 LIFVTKKCF-EL-VNLIAKNYWL 203 (222)
Q Consensus 183 IVF~nt~~~-~l-~~L~~~g~~~ 203 (222)
|+|-+|... .. +.|+..|+++
T Consensus 6 i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 6 ITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred EEECCHHHHHHHHHHHHHCCCcE
Confidence 444444444 66 7777776654
No 248
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=20.75 E-value=1.3e+02 Score=26.24 Aligned_cols=34 Identities=9% Similarity=0.139 Sum_probs=25.9
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCc-eEEEecCCCCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNY-WLIQAVGILMC 212 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~-~~~~lHg~~~q 212 (222)
..+++++|++-.. .. ..|+..|+ ++..+.|++..
T Consensus 57 ~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 94 (376)
T PRK08762 57 DREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSA 94 (376)
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHH
Confidence 4689999987433 66 88899999 58889998743
No 249
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=20.01 E-value=1.2e+02 Score=22.68 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhCCCCeEEEEecccHHHH-HHhHHCCceEEEecCC
Q psy17636 166 LTWLTHNLVEFLSTGSLLIFVTKKCFEL-VNLIAKNYWLIQAVGI 209 (222)
Q Consensus 166 ~~~L~~~l~~~~~~~~~IVF~nt~~~~l-~~L~~~g~~~~~lHg~ 209 (222)
.+.|.+...+ .+.++|.+|.+ +| +.|+..|++++.++|+
T Consensus 87 De~i~~~a~~---~~~~iVaTnD~--eLk~rlr~~GIPvi~lr~r 126 (136)
T COG1412 87 DECLLEAALK---HGRYIVATNDK--ELKRRLRENGIPVITLRQR 126 (136)
T ss_pred HHHHHHHHHH---cCCEEEEeCCH--HHHHHHHHcCCCEEEEeCC
Confidence 5666665544 34688876643 67 7888889999999965
Done!