Query psy17636
Match_columns 222
No_of_seqs 254 out of 1914
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 19:06:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 5.6E-30 1.9E-34 225.5 19.0 202 15-222 5-346 (434)
2 2i4i_A ATP-dependent RNA helic 99.9 1E-24 3.5E-29 189.5 19.4 178 45-222 2-322 (417)
3 2j0s_A ATP-dependent RNA helic 99.9 5.2E-23 1.8E-27 178.7 15.2 172 50-222 29-322 (410)
4 3fht_A ATP-dependent RNA helic 99.9 1.4E-21 4.9E-26 169.1 17.7 167 55-222 22-312 (412)
5 3fmp_B ATP-dependent RNA helic 99.9 1.1E-22 3.9E-27 180.5 11.0 176 46-222 77-379 (479)
6 3pey_A ATP-dependent RNA helic 99.9 5E-21 1.7E-25 164.5 17.4 166 56-222 3-289 (395)
7 3eiq_A Eukaryotic initiation f 99.9 3.3E-21 1.1E-25 167.0 15.5 173 49-222 31-326 (414)
8 1xti_A Probable ATP-dependent 99.9 1.1E-20 3.7E-25 162.6 16.8 164 58-222 8-296 (391)
9 1s2m_A Putative ATP-dependent 99.9 1.2E-20 4E-25 163.2 16.7 165 56-222 19-304 (400)
10 1fuu_A Yeast initiation factor 99.8 5.2E-21 1.8E-25 164.6 10.9 170 52-222 15-305 (394)
11 1hv8_A Putative ATP-dependent 99.8 2.1E-19 7.2E-24 152.8 15.9 160 57-222 5-284 (367)
12 3fe2_A Probable ATP-dependent 99.8 1.5E-19 5E-24 146.9 13.0 116 31-146 2-240 (242)
13 3fho_A ATP-dependent RNA helic 99.8 2.2E-19 7.7E-24 160.8 8.0 187 35-222 95-403 (508)
14 3sqw_A ATP-dependent RNA helic 99.8 1E-18 3.5E-23 158.7 12.1 123 100-222 193-337 (579)
15 3i5x_A ATP-dependent RNA helic 99.8 1.1E-18 3.8E-23 157.6 9.1 123 100-222 244-388 (563)
16 3dkp_A Probable ATP-dependent 99.7 1.5E-16 5E-21 129.1 12.7 111 36-146 3-243 (245)
17 1oyw_A RECQ helicase, ATP-depe 99.7 2E-16 6.8E-21 142.2 14.4 159 57-222 1-282 (523)
18 2v1x_A ATP-dependent DNA helic 99.7 1.5E-16 5.3E-21 144.8 13.1 110 112-222 199-313 (591)
19 2z0m_A 337AA long hypothetical 99.7 1.7E-15 5.8E-20 127.3 14.7 148 65-222 1-262 (337)
20 1wrb_A DJVLGB; RNA helicase, D 99.7 1.1E-16 3.8E-21 130.6 6.6 115 43-157 6-253 (253)
21 3fmo_B ATP-dependent RNA helic 99.6 1.1E-15 3.8E-20 128.2 12.5 101 45-145 76-299 (300)
22 3bor_A Human initiation factor 99.6 5.8E-15 2E-19 119.4 10.4 97 48-144 20-235 (237)
23 3iuy_A Probable ATP-dependent 99.6 4.8E-15 1.6E-19 118.9 8.9 94 50-143 11-228 (228)
24 2pl3_A Probable ATP-dependent 99.5 5.5E-14 1.9E-18 113.2 11.9 107 34-145 6-234 (236)
25 1qde_A EIF4A, translation init 99.5 4E-14 1.4E-18 113.0 10.4 97 50-146 6-219 (224)
26 2oxc_A Probable ATP-dependent 99.5 3.3E-14 1.1E-18 114.4 9.0 96 49-144 15-229 (230)
27 1tf5_A Preprotein translocase 99.5 6.4E-15 2.2E-19 136.8 4.3 61 157-217 409-473 (844)
28 1q0u_A Bstdead; DEAD protein, 99.5 7.7E-14 2.6E-18 111.2 9.8 90 56-145 2-213 (219)
29 3ber_A Probable ATP-dependent 99.5 8.1E-14 2.8E-18 113.6 9.9 89 56-144 41-248 (249)
30 2gxq_A Heat resistant RNA depe 99.5 1.7E-13 5.9E-18 107.8 11.2 87 58-144 1-206 (207)
31 1vec_A ATP-dependent RNA helic 99.5 2.6E-13 8.9E-18 106.8 10.4 84 58-141 3-205 (206)
32 1t6n_A Probable ATP-dependent 99.5 2.2E-13 7.4E-18 108.5 9.5 94 50-143 6-220 (220)
33 2va8_A SSO2462, SKI2-type heli 99.4 8.1E-13 2.8E-17 122.6 12.8 43 57-99 7-50 (715)
34 3l9o_A ATP-dependent RNA helic 99.4 2.8E-13 9.7E-18 130.9 8.8 162 58-222 162-526 (1108)
35 2zj8_A DNA helicase, putative 99.4 2.6E-13 9E-18 126.1 8.0 42 58-99 1-43 (720)
36 2xau_A PRE-mRNA-splicing facto 99.4 2E-12 6.7E-17 121.1 13.9 159 56-222 70-360 (773)
37 2p6n_A ATP-dependent RNA helic 99.4 5.3E-13 1.8E-17 104.7 5.7 90 131-222 8-100 (191)
38 2p6r_A Afuhel308 helicase; pro 99.3 2.8E-13 9.6E-18 125.5 3.7 42 58-99 1-44 (702)
39 3oiy_A Reverse gyrase helicase 99.3 1.7E-12 5.8E-17 112.7 7.2 98 103-209 172-286 (414)
40 3ly5_A ATP-dependent RNA helic 99.3 1.1E-11 3.8E-16 101.7 10.4 82 58-139 52-258 (262)
41 4ddu_A Reverse gyrase; topoiso 99.3 9.8E-12 3.3E-16 120.2 11.2 98 103-209 229-343 (1104)
42 1nkt_A Preprotein translocase 99.2 3.8E-12 1.3E-16 118.6 4.6 61 157-217 437-501 (922)
43 1gku_B Reverse gyrase, TOP-RG; 99.2 5.6E-12 1.9E-16 121.6 3.7 93 112-211 214-309 (1054)
44 2jgn_A DBX, DDX3, ATP-dependen 99.2 4.9E-11 1.7E-15 93.0 7.1 77 146-222 13-92 (185)
45 2ykg_A Probable ATP-dependent 99.1 5E-11 1.7E-15 110.0 6.7 61 162-222 378-456 (696)
46 2eyq_A TRCF, transcription-rep 99.1 1.5E-10 5.3E-15 112.4 10.4 115 103-222 741-860 (1151)
47 2xgj_A ATP-dependent RNA helic 99.1 5.1E-10 1.7E-14 107.5 13.8 120 100-222 210-428 (1010)
48 2hjv_A ATP-dependent RNA helic 99.1 1.3E-10 4.3E-15 88.6 7.3 74 148-222 5-81 (163)
49 1t5i_A C_terminal domain of A 99.1 9.7E-11 3.3E-15 90.1 6.7 73 149-222 2-77 (172)
50 2whx_A Serine protease/ntpase/ 99.1 1.7E-12 5.8E-17 118.7 -4.3 100 100-222 294-397 (618)
51 2fsf_A Preprotein translocase 99.1 1.6E-11 5.6E-16 114.0 1.8 62 157-218 418-483 (853)
52 2rb4_A ATP-dependent RNA helic 99.1 1.9E-10 6.6E-15 88.5 6.2 74 148-222 3-80 (175)
53 4a4z_A Antiviral helicase SKI2 99.1 5.3E-10 1.8E-14 107.2 10.3 59 163-222 321-421 (997)
54 1fuk_A Eukaryotic initiation f 99.0 3.5E-10 1.2E-14 86.2 6.7 71 151-222 2-76 (165)
55 4f92_B U5 small nuclear ribonu 99.0 4.3E-09 1.5E-13 105.6 15.1 115 106-222 1076-1235(1724)
56 4a2p_A RIG-I, retinoic acid in 98.9 6.7E-09 2.3E-13 92.8 10.3 60 163-222 371-448 (556)
57 3i32_A Heat resistant RNA depe 98.8 6.7E-09 2.3E-13 86.9 7.7 70 152-222 2-74 (300)
58 4a2q_A RIG-I, retinoic acid in 98.8 4.5E-08 1.5E-12 91.9 13.3 60 163-222 612-689 (797)
59 3tbk_A RIG-I helicase domain; 98.8 6.4E-08 2.2E-12 86.2 13.7 60 163-222 370-447 (555)
60 2yjt_D ATP-dependent RNA helic 98.3 6.2E-10 2.1E-14 85.3 0.0 71 151-222 2-76 (170)
61 2wv9_A Flavivirin protease NS2 98.8 4.9E-10 1.7E-14 103.3 -0.9 88 112-222 362-452 (673)
62 4f92_B U5 small nuclear ribonu 98.8 2.4E-08 8.1E-13 100.3 10.6 110 109-221 240-399 (1724)
63 4a2w_A RIG-I, retinoic acid in 98.8 9.8E-08 3.4E-12 91.1 14.3 60 163-222 612-689 (936)
64 3eaq_A Heat resistant RNA depe 98.7 1.6E-08 5.4E-13 80.2 6.0 70 152-222 5-77 (212)
65 1gm5_A RECG; helicase, replica 98.7 2.2E-08 7.4E-13 93.7 6.8 105 113-222 516-635 (780)
66 1wp9_A ATP-dependent RNA helic 98.7 1.6E-07 5.4E-12 81.6 11.9 60 163-222 342-415 (494)
67 2jlq_A Serine protease subunit 98.7 8.1E-09 2.8E-13 91.0 3.3 82 111-211 139-223 (451)
68 2oca_A DAR protein, ATP-depend 98.6 4.9E-09 1.7E-13 93.3 -0.1 123 100-222 239-393 (510)
69 2d7d_A Uvrabc system protein B 98.6 1.7E-07 5.9E-12 86.3 9.7 103 112-222 385-491 (661)
70 1c4o_A DNA nucleotide excision 98.5 3.8E-07 1.3E-11 84.1 9.2 103 112-222 379-485 (664)
71 3o8b_A HCV NS3 protease/helica 98.3 5E-07 1.7E-11 82.9 5.8 98 100-217 335-437 (666)
72 3jux_A Protein translocase sub 98.3 1.1E-06 3.9E-11 80.8 7.7 99 114-215 410-513 (822)
73 1yks_A Genome polyprotein [con 98.2 1.6E-07 5.3E-12 82.5 0.4 89 111-222 128-219 (440)
74 2fwr_A DNA repair protein RAD2 98.2 3E-07 1E-11 80.9 0.3 56 161-222 332-390 (472)
75 2z83_A Helicase/nucleoside tri 98.1 5.2E-07 1.8E-11 79.5 0.6 89 111-222 141-232 (459)
76 2v6i_A RNA helicase; membrane, 98.0 9.3E-06 3.2E-10 70.9 6.7 88 111-221 122-212 (431)
77 4gl2_A Interferon-induced heli 97.8 6.8E-06 2.3E-10 75.6 3.1 44 179-222 400-460 (699)
78 1z5z_A Helicase of the SNF2/RA 97.8 1.4E-05 4.8E-10 65.6 3.5 63 160-222 92-159 (271)
79 3dmq_A RNA polymerase-associat 97.6 5E-05 1.7E-09 72.8 5.2 62 160-222 485-550 (968)
80 3rc3_A ATP-dependent RNA helic 97.6 5.8E-05 2E-09 69.6 4.9 106 100-222 257-366 (677)
81 3h1t_A Type I site-specific re 97.5 0.00018 6E-09 65.0 7.0 50 172-222 432-492 (590)
82 1z63_A Helicase of the SNF2/RA 97.0 0.0004 1.4E-08 61.2 3.8 61 162-222 323-388 (500)
83 3llm_A ATP-dependent RNA helic 96.9 0.0011 3.9E-08 52.6 5.6 34 66-99 47-80 (235)
84 3mwy_W Chromo domain-containin 96.9 0.00073 2.5E-08 63.4 5.1 61 162-222 554-618 (800)
85 1z3i_X Similar to RAD54-like; 96.8 0.0008 2.7E-08 61.6 4.4 60 163-222 398-462 (644)
86 1rif_A DAR protein, DNA helica 94.5 0.041 1.4E-06 44.5 4.8 60 35-99 66-132 (282)
87 3gk5_A Uncharacterized rhodane 88.9 0.54 1.8E-05 32.2 4.4 43 169-211 45-90 (108)
88 3g5j_A Putative ATP/GTP bindin 87.4 0.71 2.4E-05 32.4 4.4 43 169-211 78-125 (134)
89 2w00_A HSDR, R.ECOR124I; ATP-b 87.3 0.3 1E-05 47.1 2.9 24 101-125 417-440 (1038)
90 3iwh_A Rhodanese-like domain p 84.1 0.76 2.6E-05 31.3 3.0 35 177-211 54-91 (103)
91 3foj_A Uncharacterized protein 83.3 1.1 3.7E-05 30.0 3.5 34 178-211 55-91 (100)
92 2jtq_A Phage shock protein E; 81.7 4.5 0.00015 25.9 6.0 34 178-212 40-77 (85)
93 3eme_A Rhodanese-like domain p 81.4 1.1 3.8E-05 30.1 3.0 34 178-211 55-91 (103)
94 1wv9_A Rhodanese homolog TT165 80.5 1.3 4.6E-05 29.1 3.1 33 180-212 54-89 (94)
95 1gmx_A GLPE protein; transfera 80.1 1.9 6.4E-05 29.2 3.8 41 171-211 50-94 (108)
96 3hgt_A HDA1 complex subunit 3; 77.3 4.2 0.00014 33.9 5.7 53 160-212 105-161 (328)
97 3hix_A ALR3790 protein; rhodan 76.0 2.6 9E-05 28.4 3.6 34 178-211 51-88 (106)
98 3flh_A Uncharacterized protein 76.0 3.5 0.00012 28.7 4.3 43 169-211 61-108 (124)
99 4a15_A XPD helicase, ATP-depen 74.7 3.3 0.00011 37.5 4.8 103 112-221 374-490 (620)
100 2ipc_A Preprotein translocase 74.3 9.6 0.00033 36.3 7.8 81 114-197 379-464 (997)
101 2k0z_A Uncharacterized protein 72.5 6.1 0.00021 26.7 4.8 35 178-212 55-92 (110)
102 2ipc_A Preprotein translocase 72.3 2.2 7.7E-05 40.5 3.1 21 75-96 75-95 (997)
103 1tq1_A AT5G66040, senescence-a 71.7 2.6 9E-05 29.6 2.8 34 178-211 81-118 (129)
104 3nhv_A BH2092 protein; alpha-b 71.6 2.8 9.4E-05 30.2 2.9 34 178-211 71-109 (144)
105 2fsx_A RV0390, COG0607: rhodan 70.9 3.9 0.00013 29.4 3.6 33 179-211 80-116 (148)
106 3b6e_A Interferon-induced heli 69.9 1.9 6.6E-05 32.4 1.8 27 73-99 26-52 (216)
107 2hhg_A Hypothetical protein RP 68.5 3.3 0.00011 29.3 2.7 34 178-211 85-122 (139)
108 1qxn_A SUD, sulfide dehydrogen 68.4 3.6 0.00012 29.3 2.9 35 177-211 80-118 (137)
109 3d1p_A Putative thiosulfate su 67.7 3.7 0.00013 29.0 2.9 33 179-211 91-127 (139)
110 1vee_A Proline-rich protein fa 64.9 4.5 0.00015 28.5 2.8 33 179-211 74-110 (134)
111 3ilm_A ALR3790 protein; rhodan 64.3 4.8 0.00017 28.8 2.9 34 178-211 55-92 (141)
112 1urh_A 3-mercaptopyruvate sulf 54.6 18 0.00063 28.6 5.1 36 178-213 229-268 (280)
113 3tg1_B Dual specificity protei 54.3 9.2 0.00032 27.7 3.0 33 179-211 93-137 (158)
114 1uar_A Rhodanese; sulfurtransf 53.3 16 0.00055 29.0 4.6 34 178-211 232-270 (285)
115 3crv_A XPD/RAD3 related DNA he 50.1 44 0.0015 29.4 7.3 39 178-219 392-433 (551)
116 3aay_A Putative thiosulfate su 49.5 21 0.00072 28.1 4.7 34 178-211 76-114 (277)
117 1e0c_A Rhodanese, sulfurtransf 49.3 14 0.00049 29.1 3.6 34 178-211 222-259 (271)
118 3oiy_A Reverse gyrase helicase 49.3 28 0.00096 29.0 5.7 93 67-216 8-107 (414)
119 2eg4_A Probable thiosulfate su 43.7 18 0.00061 27.8 3.3 34 178-211 183-219 (230)
120 1t6n_A Probable ATP-dependent 42.7 28 0.00094 26.1 4.3 40 180-219 83-130 (220)
121 1e0c_A Rhodanese, sulfurtransf 42.3 29 0.00099 27.2 4.4 34 178-211 80-118 (271)
122 4f67_A UPF0176 protein LPG2838 41.3 15 0.00053 29.4 2.6 34 178-211 180-217 (265)
123 1v5x_A PRA isomerase, phosphor 41.2 35 0.0012 26.0 4.6 33 180-212 54-87 (203)
124 3hzu_A Thiosulfate sulfurtrans 40.8 34 0.0012 27.8 4.8 33 178-210 110-147 (318)
125 1urh_A 3-mercaptopyruvate sulf 40.2 27 0.00094 27.5 4.0 34 178-211 85-123 (280)
126 3ntd_A FAD-dependent pyridine 39.4 22 0.00075 31.2 3.6 34 178-211 523-559 (565)
127 2oxc_A Probable ATP-dependent 38.6 34 0.0012 25.9 4.2 57 163-219 72-140 (230)
128 2fz4_A DNA repair protein RAD2 37.5 24 0.00082 27.3 3.2 21 79-99 92-112 (237)
129 2ouc_A Dual specificity protei 37.3 13 0.00046 25.7 1.5 33 179-211 83-127 (142)
130 3ber_A Probable ATP-dependent 36.8 52 0.0018 25.4 5.1 40 179-218 111-157 (249)
131 3w1s_C Ubiquitin-like protein 36.8 40 0.0014 22.3 3.7 69 139-208 9-86 (91)
132 2v1x_A ATP-dependent DNA helic 36.4 41 0.0014 30.0 4.9 100 59-218 22-126 (591)
133 3ics_A Coenzyme A-disulfide re 36.4 20 0.00067 31.8 2.8 34 178-211 540-576 (588)
134 1nsj_A PRAI, phosphoribosyl an 36.0 38 0.0013 25.9 4.0 33 180-212 55-88 (205)
135 1rhs_A Sulfur-substituted rhod 35.6 30 0.001 27.7 3.5 34 178-211 239-276 (296)
136 4gl2_A Interferon-induced heli 35.6 15 0.0005 33.2 1.9 21 79-99 6-26 (699)
137 4ddu_A Reverse gyrase; topoiso 35.5 77 0.0026 30.7 6.9 41 178-218 120-166 (1104)
138 1uar_A Rhodanese; sulfurtransf 35.2 40 0.0014 26.6 4.2 34 178-211 78-116 (285)
139 3jx9_A Putative phosphoheptose 35.1 34 0.0012 25.4 3.5 32 177-208 76-112 (170)
140 1jmt_B Splicing factor U2AF 65 34.9 18 0.00062 18.4 1.3 14 76-89 13-26 (28)
141 3hzu_A Thiosulfate sulfurtrans 34.5 23 0.00079 28.9 2.7 43 169-211 249-296 (318)
142 2wlr_A Putative thiosulfate su 34.2 51 0.0017 27.9 5.0 34 178-211 202-239 (423)
143 3h11_A CAsp8 and FADD-like apo 34.1 11 0.00037 30.4 0.7 41 179-220 43-86 (272)
144 3fe2_A Probable ATP-dependent 32.8 51 0.0017 25.1 4.4 41 179-219 102-149 (242)
145 3i2v_A Adenylyltransferase and 32.5 21 0.00071 24.3 1.9 31 181-211 74-114 (127)
146 1gm5_A RECG; helicase, replica 32.5 35 0.0012 31.7 3.8 41 179-219 417-464 (780)
147 3zyw_A Glutaredoxin-3; metal b 32.3 58 0.002 21.9 4.1 35 172-206 8-51 (111)
148 3tbk_A RIG-I helicase domain; 32.1 59 0.002 27.8 5.1 39 179-217 52-97 (555)
149 1t3k_A Arath CDC25, dual-speci 31.9 66 0.0023 22.9 4.6 34 178-211 84-130 (152)
150 2lci_A Protein OR36; structura 31.8 1.1E+02 0.0039 20.3 5.6 42 171-212 43-87 (134)
151 1qde_A EIF4A, translation init 31.7 45 0.0016 24.9 3.9 56 163-218 62-128 (224)
152 1oyw_A RECQ helicase, ATP-depe 31.2 70 0.0024 27.9 5.5 39 179-217 65-106 (523)
153 3aay_A Putative thiosulfate su 31.1 56 0.0019 25.6 4.4 34 178-211 225-263 (277)
154 1xti_A Probable ATP-dependent 31.1 49 0.0017 26.9 4.2 41 179-219 76-124 (391)
155 8tfv_A Protein (thanatin); bac 31.0 13 0.00044 17.0 0.3 8 182-189 7-14 (21)
156 3ipz_A Monothiol glutaredoxin- 30.6 74 0.0025 21.1 4.4 36 171-206 9-53 (109)
157 1yt8_A Thiosulfate sulfurtrans 30.5 44 0.0015 29.4 4.0 34 179-212 322-359 (539)
158 1rhs_A Sulfur-substituted rhod 29.9 70 0.0024 25.4 4.9 34 178-211 91-131 (296)
159 2iu4_A DHA-DHAQ, dihydroxyacet 29.8 2.2E+02 0.0075 23.5 7.8 99 100-204 168-287 (336)
160 2vl7_A XPD; helicase, unknown 29.8 17 0.00059 32.0 1.3 49 76-125 4-63 (540)
161 2eg4_A Probable thiosulfate su 29.5 76 0.0026 24.1 4.9 30 179-209 61-95 (230)
162 2wlr_A Putative thiosulfate su 29.5 56 0.0019 27.6 4.4 34 178-211 357-394 (423)
163 3q7c_A Nucleoprotein; deddh ex 28.6 1.5E+02 0.0051 22.9 6.1 71 71-144 28-159 (243)
164 3h11_B Caspase-8; cell death, 28.1 38 0.0013 27.1 2.9 23 194-217 56-78 (271)
165 3olh_A MST, 3-mercaptopyruvate 27.8 82 0.0028 25.2 5.0 34 178-211 106-146 (302)
166 4gxt_A A conserved functionall 27.3 71 0.0024 26.8 4.6 108 100-208 223-342 (385)
167 3iuy_A Probable ATP-dependent 26.4 1.7E+02 0.0057 21.7 6.4 41 179-219 94-140 (228)
168 2h54_A Caspase-1; allosteric s 25.8 58 0.002 24.3 3.4 20 194-214 72-91 (178)
169 4a2p_A RIG-I, retinoic acid in 25.1 88 0.003 26.8 5.0 38 179-216 55-99 (556)
170 3dxe_B Amyloid beta A4 protein 24.8 17 0.00058 19.3 0.2 17 67-83 11-27 (35)
171 3tp9_A Beta-lactamase and rhod 24.7 37 0.0013 29.2 2.4 34 178-211 426-463 (474)
172 4a2q_A RIG-I, retinoic acid in 24.5 95 0.0032 28.6 5.3 90 75-217 243-341 (797)
173 3olh_A MST, 3-mercaptopyruvate 24.3 46 0.0016 26.8 2.8 33 179-211 254-290 (302)
174 1fuu_A Yeast initiation factor 23.4 76 0.0026 25.7 4.1 40 179-218 89-135 (394)
175 1hzm_A Dual specificity protei 23.2 47 0.0016 23.4 2.4 35 178-212 91-138 (154)
176 1yt8_A Thiosulfate sulfurtrans 23.2 58 0.002 28.6 3.4 41 171-211 422-466 (539)
177 1qtn_A Caspase-8; apoptosis, d 22.8 59 0.002 23.9 2.9 26 192-218 59-85 (164)
178 2j6p_A SB(V)-AS(V) reductase; 22.3 50 0.0017 23.5 2.4 20 192-211 88-111 (152)
179 1okg_A Possible 3-mercaptopyru 22.3 41 0.0014 28.2 2.1 34 179-212 246-283 (373)
180 1vec_A ATP-dependent RNA helic 22.1 98 0.0034 22.5 4.2 38 180-217 72-117 (206)
181 1okg_A Possible 3-mercaptopyru 21.7 74 0.0025 26.5 3.7 34 178-211 94-132 (373)
182 3p45_A Caspase-6; protease, hu 21.6 86 0.003 23.4 3.6 27 192-219 73-100 (179)
183 1vq8_U 50S ribosomal protein L 21.5 39 0.0013 21.0 1.4 14 178-191 24-37 (66)
184 3e4c_A Caspase-1; zymogen, inf 21.1 69 0.0024 26.0 3.2 41 180-221 61-115 (302)
185 1tf5_A Preprotein translocase 20.8 1.7E+02 0.0057 27.6 6.0 139 10-219 17-171 (844)
186 2fp3_A Caspase NC; apoptosis, 20.8 64 0.0022 26.4 3.0 42 179-221 61-117 (316)
187 3s5u_A Putative uncharacterize 20.5 2E+02 0.0068 22.1 5.6 46 164-210 147-200 (220)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.97 E-value=5.6e-30 Score=225.52 Aligned_cols=202 Identities=28% Similarity=0.434 Sum_probs=169.2
Q ss_pred ccccccccCCCChhhhcCCHHHHHHH------------HHHcCCEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCC
Q psy17636 15 YEEVEKNFYQPHEDIARLTPQEAQEL------------RAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPT 82 (222)
Q Consensus 15 ~~~~~k~~~~~~~~~~~~~~~~~~~~------------~~~~~i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pT 82 (222)
..++++.||.++.... ++.+.+ ..+..+++.|.++|.|+.+|++++|++.++++|.++||.+||
T Consensus 5 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt 80 (434)
T 2db3_A 5 SPEFPGEFYIPPEPSN----DAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPT 80 (434)
T ss_dssp --------CCCCCCCC----CHHHHTSCCCCCCTTGGGGGGSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCC
T ss_pred CCCCCCCCCcCCCCch----hHHHHhhcCcccccChhhhcCceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCC
Confidence 4467788887776421 122222 233468899999999999999999999999999999999999
Q ss_pred HHHHhHHHHHhCCCCCC---------------------------------------------------------------
Q psy17636 83 PIQAQAVPAALSGRDII--------------------------------------------------------------- 99 (222)
Q Consensus 83 pIQ~~~ip~il~g~dvi--------------------------------------------------------------- 99 (222)
|+|+++||.+++|+|++
T Consensus 81 ~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~ 160 (434)
T 2db3_A 81 PIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKI 160 (434)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEE
Confidence 99999999999999998
Q ss_pred ------------------------------------------------------------HHHHHHHHhhC--CCCCeEE
Q psy17636 100 ------------------------------------------------------------EPQVRSICDHV--RPNRQTL 117 (222)
Q Consensus 100 ------------------------------------------------------------~~~l~~Il~~~--~~~~Q~~ 117 (222)
.+++..|+..+ ++++|++
T Consensus 161 ~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l 240 (434)
T 2db3_A 161 GIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTL 240 (434)
T ss_dssp CEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEE
T ss_pred EEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEE
Confidence 67788888875 5789999
Q ss_pred EEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-H
Q psy17636 118 LFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-V 194 (222)
Q Consensus 118 lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~ 194 (222)
+||||+|..+++++..++.++..+.++.......++.|.++.+...+|...|..++.... .++||||+|+.. .+ .
T Consensus 241 ~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~ 318 (434)
T 2db3_A 241 MFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQA--DGTIVFVETKRGADFLAS 318 (434)
T ss_dssp EEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCC--TTEEEECSSHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCC--CCEEEEEeCcHHHHHHHH
Confidence 999999999999999999999999998888888899999999999999999988777643 459999999976 88 9
Q ss_pred HhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 195 NLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 195 ~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.|...|+++..+||+|++.+|...+..|
T Consensus 319 ~L~~~~~~~~~lhg~~~~~~R~~~l~~F 346 (434)
T 2db3_A 319 FLSEKEFPTTSIHGDRLQSQREQALRDF 346 (434)
T ss_dssp HHHHTTCCEEEESTTSCHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCCHHHHHHHHHHH
Confidence 9999999999999999999999998754
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.93 E-value=1e-24 Score=189.53 Aligned_cols=178 Identities=31% Similarity=0.452 Sum_probs=155.2
Q ss_pred CCEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-------------------------
Q psy17636 45 GITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------- 99 (222)
Q Consensus 45 ~i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------- 99 (222)
.+.+.|.++|.|+.+|+++++++.++++|..+||..|||+|.++||.+++|+|++
T Consensus 2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 81 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81 (417)
T ss_dssp CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence 3678899999999999999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 82 PGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 161 (417)
T ss_dssp CCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHH
T ss_pred ccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHH
Confidence
Q ss_pred -------------------------------HHHHHHHHhh--CCC--CCeEEEEccccchHHHHHHHHhcCCCcEEEeC
Q psy17636 100 -------------------------------EPQVRSICDH--VRP--NRQTLLFSATFKKRIEKLARDVLTDPIKIVQG 144 (222)
Q Consensus 100 -------------------------------~~~l~~Il~~--~~~--~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~ 144 (222)
.+.+..++.. ++. .+|++++|||++..+..++..++.++..+.+.
T Consensus 162 l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2i4i_A 162 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 241 (417)
T ss_dssp HHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC
Confidence 4566666663 232 68999999999999999999999999999888
Q ss_pred CCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636 145 DIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL 221 (222)
Q Consensus 145 ~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~ 221 (222)
.......++.+.++.++..+|...|..++......+++||||+++.. .+ ..|...|+.+..+||+|++++|...+..
T Consensus 242 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 321 (417)
T 2i4i_A 242 RVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 321 (417)
T ss_dssp ----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHH
Confidence 77778889999999999999999888877765556799999999976 88 9999999999999999999999988765
Q ss_pred C
Q psy17636 222 V 222 (222)
Q Consensus 222 ~ 222 (222)
|
T Consensus 322 f 322 (417)
T 2i4i_A 322 F 322 (417)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.90 E-value=5.2e-23 Score=178.66 Aligned_cols=172 Identities=21% Similarity=0.314 Sum_probs=151.2
Q ss_pred cCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------
Q psy17636 50 GADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------ 99 (222)
Q Consensus 50 g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------ 99 (222)
....+.+..+|+++++++.++++|.+.||..|||+|.++||.+++|+|++
T Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~ 108 (410)
T 2j0s_A 29 TSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQA 108 (410)
T ss_dssp CCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCE
T ss_pred CCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceE
Confidence 33445567899999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 109 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEa 188 (410)
T 2j0s_A 109 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA 188 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccH
Confidence
Q ss_pred --------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCc-hHHHHH
Q psy17636 100 --------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQ-KLTWLT 170 (222)
Q Consensus 100 --------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~-K~~~L~ 170 (222)
...+..++..+++++|++++|||++..+.+++..++.+|..+.+........++.+.+..++..+ |...|.
T Consensus 189 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 268 (410)
T 2j0s_A 189 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC 268 (410)
T ss_dssp HHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHH
Confidence 57788888888889999999999999999999999999999887776677889999999888754 888887
Q ss_pred HHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 171 HNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 171 ~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.++... ..+++||||+++.. .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus 269 ~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f 322 (410)
T 2j0s_A 269 DLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEF 322 (410)
T ss_dssp HHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred HHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHH
Confidence 766654 45799999999976 88 99999999999999999999999988654
No 4
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.88 E-value=1.4e-21 Score=169.05 Aligned_cols=167 Identities=24% Similarity=0.309 Sum_probs=147.2
Q ss_pred CCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCC--CCCC---------------------------------
Q psy17636 55 YPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII--------------------------------- 99 (222)
Q Consensus 55 ~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g--~dvi--------------------------------- 99 (222)
.++.+|+++++++.++++|.+.||..|||+|.++||.+++| +|++
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil 101 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 101 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEE
Confidence 44788999999999999999999999999999999999998 8887
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 102 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~ 181 (412)
T 3fht_A 102 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 181 (412)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHh
Confidence
Q ss_pred -----HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHH
Q psy17636 100 -----EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNL 173 (222)
Q Consensus 100 -----~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l 173 (222)
...+..+...++.++|++++|||++..+..++..++.++..+.+.........+.+.++.+.. ..|...|..++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 261 (412)
T 3fht_A 182 ATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLY 261 (412)
T ss_dssp STTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHH
Confidence 345666777778889999999999999999999999999999888777788899999998887 66777777666
Q ss_pred HhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 174 VEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 174 ~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
... ..+++||||+++.. .+ ..|...|+.+..+||+|++++|...+..|
T Consensus 262 ~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 312 (412)
T 3fht_A 262 GAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 312 (412)
T ss_dssp HHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred hhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHH
Confidence 554 45799999999976 88 99999999999999999999999988654
No 5
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=180.49 Aligned_cols=176 Identities=24% Similarity=0.319 Sum_probs=87.6
Q ss_pred CEEecCCCCCC---CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCC--CCCC---------------------
Q psy17636 46 ITVSGADPPYP---VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII--------------------- 99 (222)
Q Consensus 46 i~v~g~~~p~~---~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g--~dvi--------------------- 99 (222)
+.+.+.+.+.| +.+|.+++|++.++++|.++||..|||+|.++||.++.| +|++
T Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp EEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred ceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 44666666655 578999999999999999999999999999999999987 8887
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 157 ~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 236 (479)
T 3fmp_B 157 EPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (479)
T ss_dssp CTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGC
T ss_pred hhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccC
Confidence
Q ss_pred -----------------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC
Q psy17636 100 -----------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ 162 (222)
Q Consensus 100 -----------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~ 162 (222)
...+..++..++.++|+++||||++..+..++..++.+|..+.+.........+.|.++.++.
T Consensus 237 ~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 316 (479)
T 3fmp_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS 316 (479)
T ss_dssp CEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC------------------
T ss_pred CEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCC
Confidence 446667777788899999999999999999999999999999998887788899999998887
Q ss_pred -CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 163 -TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 163 -~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..|...|..++.. ...+++||||+++.. .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus 317 ~~~~~~~l~~~~~~-~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f 379 (479)
T 3fmp_B 317 RDEKFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 379 (479)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhh-ccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHH
Confidence 6677777665543 345799999999976 88 99999999999999999999999988765
No 6
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.87 E-value=5e-21 Score=164.47 Aligned_cols=166 Identities=22% Similarity=0.303 Sum_probs=143.6
Q ss_pred CCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCC--CCCC----------------------------------
Q psy17636 56 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII---------------------------------- 99 (222)
Q Consensus 56 ~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g--~dvi---------------------------------- 99 (222)
...+|++++|++.++++|.+.||..|||+|.++|+.++.| +|++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 3578999999999999999999999999999999999998 8887
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~ 162 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQG 162 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccc
Confidence
Q ss_pred -HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHHHhhC
Q psy17636 100 -EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNLVEFL 177 (222)
Q Consensus 100 -~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~~ 177 (222)
...+..+...++++.|++++|||++..+..++..++.++..+.+.........+.+.+..+.. ..|...|..+ ....
T Consensus 163 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 241 (395)
T 3pey_A 163 LGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTEL-YGLM 241 (395)
T ss_dssp HHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHH-HTTT
T ss_pred cHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHH-HHhc
Confidence 355666777788899999999999999999999999999988877776777889999988876 5666666554 4444
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..+++||||+++.. .+ ..|+..|+.+..+||+|++++|...+..|
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 289 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDF 289 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHH
Confidence 56899999999976 88 99999999999999999999999988654
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=167.03 Aligned_cols=173 Identities=21% Similarity=0.305 Sum_probs=149.2
Q ss_pred ecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-----------------------------
Q psy17636 49 SGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII----------------------------- 99 (222)
Q Consensus 49 ~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi----------------------------- 99 (222)
.+.+.+....+|+++++++.+.+.|.+.||..|+|+|.++|+.++.|+|++
T Consensus 31 ~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~ 110 (414)
T 3eiq_A 31 IESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQ 110 (414)
T ss_dssp CCCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCC
T ss_pred cCCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCcee
Confidence 344556677899999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 111 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViD 190 (414)
T 3eiq_A 111 ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLD 190 (414)
T ss_dssp EEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEEC
T ss_pred EEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEE
Confidence
Q ss_pred ----------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHH
Q psy17636 100 ----------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-TQKLTW 168 (222)
Q Consensus 100 ----------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~ 168 (222)
...+..++..+++++|++++|||++..+..++..++.++..+.+.........+.+.+..+.. ..|...
T Consensus 191 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (414)
T 3eiq_A 191 EADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDT 270 (414)
T ss_dssp SHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHH
T ss_pred CHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHH
Confidence 467788888888999999999999999999999999999999887777788889999998887 448887
Q ss_pred HHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 169 LTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 169 L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
|..++.. ...+++||||+++.. .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus 271 l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f 326 (414)
T 3eiq_A 271 LCDLYET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREF 326 (414)
T ss_dssp HHHHHHS-SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHH
Confidence 7665554 456799999999977 88 99999999999999999999999987654
No 8
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.86 E-value=1.1e-20 Score=162.63 Aligned_cols=164 Identities=24% Similarity=0.364 Sum_probs=144.0
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------- 99 (222)
Q Consensus 58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------- 99 (222)
.+|+++++++.++++|.++||..|+|+|.++|+.++.|+|++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 579999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence
Q ss_pred ---HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCC-CCCCCeeEEEEEcCCCchHHHHHHHHHh
Q psy17636 100 ---EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIG-EANTDITQVVINLPQTQKLTWLTHNLVE 175 (222)
Q Consensus 100 ---~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~ 175 (222)
...+..++...+.++|++++|||++..+..++..++.+|..+.+.... ....++.+.+..++..+|...|..++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 247 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDV 247 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHh
Confidence 356667777778899999999999999999999999999988776554 4557789999999989999888776665
Q ss_pred hCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 176 FLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 176 ~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
. ..+++||||+++.. .+ ..|...|+++..+||+|++++|...+..|
T Consensus 248 ~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 296 (391)
T 1xti_A 248 L-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF 296 (391)
T ss_dssp S-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred c-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 4 56899999999977 78 99999999999999999999999887654
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.86 E-value=1.2e-20 Score=163.16 Aligned_cols=165 Identities=24% Similarity=0.338 Sum_probs=143.1
Q ss_pred CCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------------
Q psy17636 56 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------ 99 (222)
Q Consensus 56 ~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------ 99 (222)
+..+|++++|++.++++|.++||..|+|+|.++|+.+++|+|++
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 35689999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~ 178 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR 178 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhh
Confidence
Q ss_pred --HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC
Q psy17636 100 --EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL 177 (222)
Q Consensus 100 --~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~ 177 (222)
...+..++..+++..|++++|||++..+.+....++.+|..+.+... ....++.+++..++...|...|..++.. .
T Consensus 179 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~~~~-~ 256 (400)
T 1s2m_A 179 DFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLHCLNTLFSK-L 256 (400)
T ss_dssp HHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHHHHHHHHHH-S
T ss_pred chHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHHHHHHHHhh-c
Confidence 45677777778889999999999999999999999999988765433 4567899999999888898888766654 4
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..+++||||+++.. .+ ..|...|+.+..+||+|++++|...+..|
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 304 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEF 304 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHH
Confidence 56799999999976 78 99999999999999999999999887654
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.84 E-value=5.2e-21 Score=164.63 Aligned_cols=170 Identities=20% Similarity=0.305 Sum_probs=86.2
Q ss_pred CCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------
Q psy17636 52 DPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------- 99 (222)
Q Consensus 52 ~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------- 99 (222)
+...+..+|+++++++.+.++|.+.||..|+|+|.++|+.+++|+|++
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~li 94 (394)
T 1fuu_A 15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALM 94 (394)
T ss_dssp SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEE
T ss_pred hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEE
Confidence 456677899999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 95 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~ 174 (394)
T 1fuu_A 95 LAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM 174 (394)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH
T ss_pred EcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHh
Confidence
Q ss_pred -----HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCc-hHHHHHHHH
Q psy17636 100 -----EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQ-KLTWLTHNL 173 (222)
Q Consensus 100 -----~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~-K~~~L~~~l 173 (222)
...+..++..+++.+|++++|||++..+.+++..++.+|..+.+........++.+.+..+...+ |...|..++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLY 254 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHH
Confidence 45677888888889999999999999999999999999999988777677778888888887744 777675555
Q ss_pred HhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 174 VEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 174 ~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.. ...+++||||+++.. .+ ..|+..|+.+..+||+|++.+|...+..|
T Consensus 255 ~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 305 (394)
T 1fuu_A 255 DS-ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEF 305 (394)
T ss_dssp ----------------------------------------------------
T ss_pred hc-CCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHH
Confidence 43 345799999999876 78 99999999999999999999999988765
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.82 E-value=2.1e-19 Score=152.83 Aligned_cols=160 Identities=23% Similarity=0.292 Sum_probs=139.4
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCC-CCCC------------------------------------
Q psy17636 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG-RDII------------------------------------ 99 (222)
Q Consensus 57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g-~dvi------------------------------------ 99 (222)
.++|+++++++.++++|.++||..|+|+|.++|+.+++| ++++
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~ 84 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTR 84 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCH
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCH
Confidence 468999999999999999999999999999999999988 6877
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 85 ~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~ 164 (367)
T 1hv8_A 85 ELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGF 164 (367)
T ss_dssp HHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhch
Confidence
Q ss_pred HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCC
Q psy17636 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLST 179 (222)
Q Consensus 100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~ 179 (222)
...+..++..++++.|++++|||++..+..++..++.++..+... ...++.+.++.+...+|...|...+. ...
T Consensus 165 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~ 238 (367)
T 1hv8_A 165 IKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK----INANIEQSYVEVNENERFEALCRLLK--NKE 238 (367)
T ss_dssp HHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC----SSSSSEEEEEECCGGGHHHHHHHHHC--STT
T ss_pred HHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec----CCCCceEEEEEeChHHHHHHHHHHHh--cCC
Confidence 456777788888899999999999999999999999988777543 34478899999988999988877665 245
Q ss_pred CeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 180 GSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 180 ~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
+++||||+++.. .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus 239 ~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 284 (367)
T 1hv8_A 239 FYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLF 284 (367)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHH
Confidence 799999999977 88 99999999999999999999999887653
No 12
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.81 E-value=1.5e-19 Score=146.95 Aligned_cols=116 Identities=44% Similarity=0.673 Sum_probs=106.9
Q ss_pred cCCHHHHHHHHHHcCCEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-----------
Q psy17636 31 RLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII----------- 99 (222)
Q Consensus 31 ~~~~~~~~~~~~~~~i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi----------- 99 (222)
.+++++++.+++.+++.+.|.++|.|+.+|+++++++.++++|.+.||..|||+|.++||.+++|+|++
T Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~ 81 (242)
T 3fe2_A 2 MRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTL 81 (242)
T ss_dssp ----CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHH
Confidence 457789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 82 ~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~ 161 (242)
T 3fe2_A 82 SYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 161 (242)
T ss_dssp HHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHH
T ss_pred HHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHH
Confidence
Q ss_pred --------------------------------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCC
Q psy17636 100 --------------------------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDI 146 (222)
Q Consensus 100 --------------------------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~ 146 (222)
.+++..|++.+++++|+++||||+|+.++++++.++++|+.|.++..
T Consensus 162 ~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 162 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 67788899999999999999999999999999999999999998764
No 13
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.78 E-value=2.2e-19 Score=160.82 Aligned_cols=187 Identities=20% Similarity=0.188 Sum_probs=112.4
Q ss_pred HHHHHHHHHcCCEEe-cCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCC--CCCC------------
Q psy17636 35 QEAQELRAKSGITVS-GADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII------------ 99 (222)
Q Consensus 35 ~~~~~~~~~~~i~v~-g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g--~dvi------------ 99 (222)
++..++.+..++... ....|.++..|...++++.+.+.+.+.||..|+|+|.++|+.+++| +|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 95 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp --------------------------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHH
Confidence 444455555554432 2333555677888899999999999999999999999999999998 8887
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 175 ~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~ 254 (508)
T 3fho_A 175 FALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQ 254 (508)
T ss_dssp HHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC----------CCCCSEEEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCC
Confidence
Q ss_pred -----------------------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEE
Q psy17636 100 -----------------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQV 156 (222)
Q Consensus 100 -----------------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~ 156 (222)
...+..++..++++.|++++|||++..++.++..++.++..+.+.........+.+.
T Consensus 255 ~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 334 (508)
T 3fho_A 255 LDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQL 334 (508)
T ss_dssp SCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCE
T ss_pred ccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEE
Confidence 456667888888899999999999999999999999999988887777777788888
Q ss_pred EEEcCC-CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 157 VINLPQ-TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 157 ~~~~~~-~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
+..+.. ..|...+..++.. ...+++||||+++.. .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus 335 ~~~~~~~~~k~~~l~~ll~~-~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f 403 (508)
T 3fho_A 335 YMDCQSEEHKYNVLVELYGL-LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSF 403 (508)
T ss_dssp EEEC--CHHHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHH
T ss_pred EEECCchHHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 888866 5566666554443 456899999999976 88 99999999999999999999999887654
No 14
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=1e-18 Score=158.70 Aligned_cols=123 Identities=22% Similarity=0.252 Sum_probs=90.6
Q ss_pred HHHHHHHHhhCC-------CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCC----CCCCCCeeEEEEEcCC-CchHH
Q psy17636 100 EPQVRSICDHVR-------PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDI----GEANTDITQVVINLPQ-TQKLT 167 (222)
Q Consensus 100 ~~~l~~Il~~~~-------~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~----~~~~~~i~q~~~~~~~-~~K~~ 167 (222)
.+++..|+..++ .++|+++||||+++.+..++..++.++..+.+... ......+.+.+..++. ..+..
T Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 272 (579)
T 3sqw_A 193 RDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIF 272 (579)
T ss_dssp HHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHH
T ss_pred HHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHH
Confidence 345555555442 36799999999999999999999998877655432 2455678888888876 33332
Q ss_pred HH----HHHHHhhCCCCeEEEEecccHH--HH-HHhHHC---CceEEEecCCCCCChHHHhhcCC
Q psy17636 168 WL----THNLVEFLSTGSLLIFVTKKCF--EL-VNLIAK---NYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 168 ~L----~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~---g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.+ ...+.......++||||+|+.. .+ ..|... |+.+..+||+|++.+|...+..|
T Consensus 273 ~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F 337 (579)
T 3sqw_A 273 AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF 337 (579)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHh
Confidence 23 2333333445799999999976 77 888776 99999999999999999988654
No 15
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.76 E-value=1.1e-18 Score=157.59 Aligned_cols=123 Identities=22% Similarity=0.249 Sum_probs=89.9
Q ss_pred HHHHHHHHhhC-------CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCC----CCCCCCeeEEEEEcCC-CchHH
Q psy17636 100 EPQVRSICDHV-------RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDI----GEANTDITQVVINLPQ-TQKLT 167 (222)
Q Consensus 100 ~~~l~~Il~~~-------~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~----~~~~~~i~q~~~~~~~-~~K~~ 167 (222)
.+++..|+..+ +.++|+++||||++..+..++..++.++..+.+... ......+.+.+..++. ..+..
T Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (563)
T 3i5x_A 244 RDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIF 323 (563)
T ss_dssp HHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHH
T ss_pred HHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHH
Confidence 34445555443 236799999999999999999999998876655332 2455678888888776 33333
Q ss_pred HHHH----HHHhhCCCCeEEEEecccHH--HH-HHhHHC---CceEEEecCCCCCChHHHhhcCC
Q psy17636 168 WLTH----NLVEFLSTGSLLIFVTKKCF--EL-VNLIAK---NYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 168 ~L~~----~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~---g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.++. .+......+++||||+|+.. .+ ..|... |+.+..+||+|++.+|...+..|
T Consensus 324 ~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f 388 (563)
T 3i5x_A 324 AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF 388 (563)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHH
Confidence 3333 23333446799999999976 77 888776 99999999999999999988654
No 16
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=129.13 Aligned_cols=111 Identities=31% Similarity=0.502 Sum_probs=100.2
Q ss_pred HHHHHHHHcCCEEecCCCCCCCCCcCCC----CCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------
Q psy17636 36 EAQELRAKSGITVSGADPPYPVSSFGHF----GFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------ 99 (222)
Q Consensus 36 ~~~~~~~~~~i~v~g~~~p~~~~~f~~l----~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------ 99 (222)
+++.+|+++++.+.|.++|.|+.+|+++ ++++.++++|.++||..|||+|.++||.+++|+|++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 5788999999999999999999999997 899999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 83 ~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~ 162 (245)
T 3dkp_A 83 FSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIY 162 (245)
T ss_dssp HHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHH
T ss_pred HHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHH
Confidence
Q ss_pred ---------------------------------HHHHHHHHhhC-CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCC
Q psy17636 100 ---------------------------------EPQVRSICDHV-RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGD 145 (222)
Q Consensus 100 ---------------------------------~~~l~~Il~~~-~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~ 145 (222)
.+++..++..+ +.+.|+++||||+|++++++++.++++|+.|.++.
T Consensus 163 ~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 163 LLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp HHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred HHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 34566666665 45789999999999999999999999999999876
Q ss_pred C
Q psy17636 146 I 146 (222)
Q Consensus 146 ~ 146 (222)
.
T Consensus 243 ~ 243 (245)
T 3dkp_A 243 R 243 (245)
T ss_dssp -
T ss_pred C
Confidence 4
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.70 E-value=2e-16 Score=142.23 Aligned_cols=159 Identities=15% Similarity=0.159 Sum_probs=121.2
Q ss_pred CCCcCCCCCCHHHHHHHHH-CCCCCCCHHHHhHHHHHhCCCCCC------------------------------------
Q psy17636 57 VSSFGHFGFDEVLMKALRK-CEYTSPTPIQAQAVPAALSGRDII------------------------------------ 99 (222)
Q Consensus 57 ~~~f~~l~l~~~l~~~l~~-~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------ 99 (222)
+.+|++++|++.+.+.|++ .||..|+|+|.++|+.+++|+|++
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q 80 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD 80 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHH
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHH
Confidence 3579999999999999998 699999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 81 ~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~ 160 (523)
T 1oyw_A 81 QVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP 160 (523)
T ss_dssp HHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCH
T ss_pred HHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHH
Confidence
Q ss_pred -HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhc--CCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhh
Q psy17636 100 -EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVL--TDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEF 176 (222)
Q Consensus 100 -~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l--~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~ 176 (222)
...+..+.... ++.+++++|||.+..+..-....+ .+|..+ +... ...++. +..++..++...|+.++...
T Consensus 161 ~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~--~r~~l~--~~v~~~~~~~~~l~~~l~~~ 234 (523)
T 1oyw_A 161 EYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSF--DRPNIR--YMLMEKFKPLDQLMRYVQEQ 234 (523)
T ss_dssp HHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCC--CCTTEE--EEEEECSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCC--CCCceE--EEEEeCCCHHHHHHHHHHhc
Confidence 11122233333 358899999999988766444443 456544 3222 234454 34445567777787877654
Q ss_pred CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 177 LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 177 ~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..+++||||+|+.. .+ ..|...|+++..+||+|++++|...+..|
T Consensus 235 -~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f 282 (523)
T 1oyw_A 235 -RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKF 282 (523)
T ss_dssp -TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred -CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHH
Confidence 45799999999977 88 99999999999999999999999987654
No 18
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.69 E-value=1.5e-16 Score=144.81 Aligned_cols=110 Identities=12% Similarity=-0.022 Sum_probs=80.8
Q ss_pred CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC--CchHHHHHHHHHhhCCCCeEEEEeccc
Q psy17636 112 PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ--TQKLTWLTHNLVEFLSTGSLLIFVTKK 189 (222)
Q Consensus 112 ~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~--~~K~~~L~~~l~~~~~~~~~IVF~nt~ 189 (222)
++.|+++||||++..+...+..++..+..+.+.. .....++...+...+. .++...|..++......+++||||+|+
T Consensus 199 ~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr 277 (591)
T 2v1x_A 199 PNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQ 277 (591)
T ss_dssp TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSH
T ss_pred CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcH
Confidence 3679999999999999888888877443222222 2334566555444433 234555666665544567999999999
Q ss_pred HH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 190 CF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 190 ~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.. .+ ..|...|+.+..+||+|++++|...+..|
T Consensus 278 ~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F 313 (591)
T 2v1x_A 278 KDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKW 313 (591)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHH
Confidence 77 88 99999999999999999999999988654
No 19
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.66 E-value=1.7e-15 Score=127.31 Aligned_cols=148 Identities=19% Similarity=0.284 Sum_probs=121.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC---------------------------------------------
Q psy17636 65 FDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------------------------- 99 (222)
Q Consensus 65 l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------------------------- 99 (222)
|++.|.++|+++||..|+|+|.++|+.+++|+|++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999988
Q ss_pred ------------------------------------------------------------------HHHHHHHHhhCCCC
Q psy17636 100 ------------------------------------------------------------------EPQVRSICDHVRPN 113 (222)
Q Consensus 100 ------------------------------------------------------------------~~~l~~Il~~~~~~ 113 (222)
...+..++...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~ 160 (337)
T 2z0m_A 81 RYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNR 160 (337)
T ss_dssp TTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTC
T ss_pred hhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcc
Confidence 46677788888888
Q ss_pred CeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--
Q psy17636 114 RQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF-- 191 (222)
Q Consensus 114 ~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~-- 191 (222)
.|++++|||++..+.+....++.++..+... ....++.+.++.++...+.. +..+.. ...+++||||+++..
T Consensus 161 ~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~lvf~~~~~~~~ 234 (337)
T 2z0m_A 161 KITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRSK--VQALRE-NKDKGVIVFVRTRNRVA 234 (337)
T ss_dssp SEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHHH--HHHHHT-CCCSSEEEECSCHHHHH
T ss_pred cEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHHH--HHHHHh-CCCCcEEEEEcCHHHHH
Confidence 9999999999999999999999988877432 34567888888887765443 243433 346799999999976
Q ss_pred HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 192 EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 192 ~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.+ ..|. ++..+||+|++.+|...+..|
T Consensus 235 ~l~~~l~----~~~~~~~~~~~~~r~~~~~~f 262 (337)
T 2z0m_A 235 KLVRLFD----NAIELRGDLPQSVRNRNIDAF 262 (337)
T ss_dssp HHHTTCT----TEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHhh----hhhhhcCCCCHHHHHHHHHHH
Confidence 66 6665 688999999999999887654
No 20
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.65 E-value=1.1e-16 Score=130.58 Aligned_cols=115 Identities=39% Similarity=0.634 Sum_probs=92.9
Q ss_pred HcCCEEecCCCCC--CCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC---------------------
Q psy17636 43 KSGITVSGADPPY--PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------- 99 (222)
Q Consensus 43 ~~~i~v~g~~~p~--~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------- 99 (222)
+..+.+.|.+.|. ++.+|+++++++.++++|.++||..|||+|.++||.+++|+|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l 85 (253)
T 1wrb_A 6 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHL 85 (253)
T ss_dssp CCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 3467889999988 89999999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 86 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l 165 (253)
T 1wrb_A 86 VCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI 165 (253)
T ss_dssp HTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHH
T ss_pred HhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence
Q ss_pred --------------------------HHHHHHHHhh--CCC--CCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCC
Q psy17636 100 --------------------------EPQVRSICDH--VRP--NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEA 149 (222)
Q Consensus 100 --------------------------~~~l~~Il~~--~~~--~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~ 149 (222)
.+++..|+.. ++. ++|+++||||++.+++++++.++.+|+.|.++..+..
T Consensus 166 ~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~ 245 (253)
T 1wrb_A 166 EKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGST 245 (253)
T ss_dssp HTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----
T ss_pred HcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 5678888884 344 7899999999999999999999999999999988888
Q ss_pred CCCeeEEE
Q psy17636 150 NTDITQVV 157 (222)
Q Consensus 150 ~~~i~q~~ 157 (222)
..+|+|++
T Consensus 246 ~~~i~q~~ 253 (253)
T 1wrb_A 246 SDSIKQEI 253 (253)
T ss_dssp --------
T ss_pred cCCceecC
Confidence 88888864
No 21
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=128.17 Aligned_cols=101 Identities=32% Similarity=0.465 Sum_probs=90.8
Q ss_pred CCEEecCCCCCC---CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCC--CCCC--------------------
Q psy17636 45 GITVSGADPPYP---VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII-------------------- 99 (222)
Q Consensus 45 ~i~v~g~~~p~~---~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g--~dvi-------------------- 99 (222)
.+.+.+.+.+.| +.+|++++|++.++++|.++||..|||+|.++||.++.| +|++
T Consensus 76 ~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~ 155 (300)
T 3fmo_B 76 QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 155 (300)
T ss_dssp CEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHh
Confidence 466777776665 578999999999999999999999999999999999998 9988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 156 l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 156 VEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred hhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence
Q ss_pred ------------------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCC
Q psy17636 100 ------------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGD 145 (222)
Q Consensus 100 ------------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~ 145 (222)
.+++..|+..+++++|+++||||++..+..++..++.+|+.|.+..
T Consensus 236 l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp CSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred ceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 4667788888899999999999999999999999999999998754
No 22
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.59 E-value=5.8e-15 Score=119.38 Aligned_cols=97 Identities=24% Similarity=0.440 Sum_probs=83.7
Q ss_pred EecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC----------------------------
Q psy17636 48 VSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII---------------------------- 99 (222)
Q Consensus 48 v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi---------------------------- 99 (222)
+.+.+.|.++.+|+++++++.++++|.+.||..|||+|.++||.+++|+|++
T Consensus 20 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~ 99 (237)
T 3bor_A 20 VIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKET 99 (237)
T ss_dssp -------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSC
T ss_pred cccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCc
Confidence 3455678889999999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 100 QALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence
Q ss_pred -----------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeC
Q psy17636 100 -----------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQG 144 (222)
Q Consensus 100 -----------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~ 144 (222)
...+..|++.++.++|+++||||+|++++++++.++++|+.|.++
T Consensus 180 DEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 180 DEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp ESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 567888888898899999999999999999999999999998765
No 23
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.58 E-value=4.8e-15 Score=118.92 Aligned_cols=94 Identities=39% Similarity=0.571 Sum_probs=88.0
Q ss_pred cCCCCCCCCCcCC-CCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-----------------------------
Q psy17636 50 GADPPYPVSSFGH-FGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII----------------------------- 99 (222)
Q Consensus 50 g~~~p~~~~~f~~-l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi----------------------------- 99 (222)
+..+|.|+.+|++ +++++.++++|.+.||.+|||+|.++||.+++|+|++
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 4578999999999 7999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceE
Confidence
Q ss_pred --------------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEe
Q psy17636 100 --------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQ 143 (222)
Q Consensus 100 --------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v 143 (222)
.+.+..|+..+++++|+++||||+|+.+++++..++++|+.|.|
T Consensus 171 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 171 LVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp EEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred EEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 67788899999999999999999999999999999999998864
No 24
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.54 E-value=5.5e-14 Score=113.24 Aligned_cols=107 Identities=27% Similarity=0.401 Sum_probs=93.7
Q ss_pred HHHHHHHHHHcCCEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------
Q psy17636 34 PQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------- 99 (222)
Q Consensus 34 ~~~~~~~~~~~~i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------- 99 (222)
+++.+.+++.+.- ..+.++.+|+++++++.++++|.+.||..|||+|.++||.+++|+|++
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 6 RESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp HHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 4566677766543 124567899999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 81 ~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~ 160 (236)
T 2pl3_A 81 VPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQH 160 (236)
T ss_dssp HHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHH
T ss_pred HHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHH
Confidence
Q ss_pred ----------------------------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCC
Q psy17636 100 ----------------------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGD 145 (222)
Q Consensus 100 ----------------------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~ 145 (222)
...+..++..+++++|+++||||++..++++++.++.+|..|.++.
T Consensus 161 l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 161 MDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp HHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred HHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 5678888888999999999999999999999999999999998754
No 25
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.53 E-value=4e-14 Score=113.01 Aligned_cols=97 Identities=22% Similarity=0.416 Sum_probs=86.5
Q ss_pred cCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------
Q psy17636 50 GADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------ 99 (222)
Q Consensus 50 g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------ 99 (222)
..+.|+++.+|+++++++.+++.|.+.||..|+|+|.++|+.+++|+|++
T Consensus 6 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~ 85 (224)
T 1qde_A 6 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQA 85 (224)
T ss_dssp CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCE
T ss_pred ccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceE
Confidence 34567888999999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah 165 (224)
T 1qde_A 86 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 165 (224)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred EEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh
Confidence
Q ss_pred -------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCC
Q psy17636 100 -------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDI 146 (222)
Q Consensus 100 -------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~ 146 (222)
...+..++..+++++|++++|||++..++++++.++++|+.|.+...
T Consensus 166 ~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 166 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred HHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 56688888888899999999999999999999999999999977654
No 26
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.52 E-value=3.3e-14 Score=114.36 Aligned_cols=96 Identities=22% Similarity=0.379 Sum_probs=81.1
Q ss_pred ecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-----------------------------
Q psy17636 49 SGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII----------------------------- 99 (222)
Q Consensus 49 ~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi----------------------------- 99 (222)
.++..|.+..+|+++++++.+.++|.++||..|||+|.++||.+++|+|++
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~ 94 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQ 94 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCC
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCce
Confidence 355667788999999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 95 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 174 (230)
T 2oxc_A 95 ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDE 174 (230)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESS
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCC
Confidence
Q ss_pred ----------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeC
Q psy17636 100 ----------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQG 144 (222)
Q Consensus 100 ----------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~ 144 (222)
.+++..|++.++.++|+++||||+|+++.+++..++++|+.|.++
T Consensus 175 ah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 175 ADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp HHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred chHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 567778888899899999999999999999999999999988653
No 27
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.50 E-value=6.4e-15 Score=136.82 Aligned_cols=61 Identities=8% Similarity=-0.106 Sum_probs=49.5
Q ss_pred EEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636 157 VINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPS 217 (222)
Q Consensus 157 ~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~ 217 (222)
++++...+|...|...+.... ...++||||+|+.. .| ..|...|+++.+|||++.+++|+-
T Consensus 409 ~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~i 473 (844)
T 1tf5_A 409 LIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQI 473 (844)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHH
Confidence 455666789998888776532 34689999999966 88 999999999999999988777754
No 28
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.50 E-value=7.7e-14 Score=111.23 Aligned_cols=90 Identities=23% Similarity=0.480 Sum_probs=82.2
Q ss_pred CCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------------
Q psy17636 56 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------ 99 (222)
Q Consensus 56 ~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------ 99 (222)
|.++|+++++++.++++|.++||..|||+|.++||.+++|+|++
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 81 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPT 81 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCc
Confidence 35789999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 161 (219)
T 1q0u_A 82 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL 161 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH
Confidence
Q ss_pred ------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCC
Q psy17636 100 ------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGD 145 (222)
Q Consensus 100 ------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~ 145 (222)
...+..|+..+++++|+++||||+|.++.++++.++++|..|.+..
T Consensus 162 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 162 MLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred HhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 5678889999988999999999999999999999999999987754
No 29
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.50 E-value=8.1e-14 Score=113.64 Aligned_cols=89 Identities=40% Similarity=0.661 Sum_probs=83.3
Q ss_pred CCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------------
Q psy17636 56 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------ 99 (222)
Q Consensus 56 ~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------ 99 (222)
+..+|+++++++.++++|.++||..|||+|.++||.+++|+|++
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Pt 120 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPT 120 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSS
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCC
Confidence 46789999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 121 r~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~ 200 (249)
T 3ber_A 121 RELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILN 200 (249)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhc
Confidence
Q ss_pred ---HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeC
Q psy17636 100 ---EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQG 144 (222)
Q Consensus 100 ---~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~ 144 (222)
...+..|+..+++++|+++||||++..++++++.++++|+.|.++
T Consensus 201 ~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 201 MDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp TTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred cChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 567888888898899999999999999999999999999998764
No 30
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.49 E-value=1.7e-13 Score=107.80 Aligned_cols=87 Identities=39% Similarity=0.602 Sum_probs=81.2
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------- 99 (222)
Q Consensus 58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------- 99 (222)
++|+++++++.++++|.+.||..|+|+|.++|+.+++|+|++
T Consensus 1 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P 80 (207)
T 2gxq_A 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP 80 (207)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEEC
Confidence 479999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 81 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~ 160 (207)
T 2gxq_A 81 TRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMG 160 (207)
T ss_dssp SHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccc
Confidence
Q ss_pred -HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeC
Q psy17636 100 -EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQG 144 (222)
Q Consensus 100 -~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~ 144 (222)
...+..++..+++++|++++|||+|+.++++++.++++|+.|.+.
T Consensus 161 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 161 FEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp CHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred hHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 567888888888899999999999999999999999999998764
No 31
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.47 E-value=2.6e-13 Score=106.78 Aligned_cols=84 Identities=33% Similarity=0.577 Sum_probs=79.3
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------- 99 (222)
Q Consensus 58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------- 99 (222)
++|+++++++.++++|.++||..|+|+|.++|+.+++|+|++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 579999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence
Q ss_pred -HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEE
Q psy17636 100 -EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141 (222)
Q Consensus 100 -~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i 141 (222)
...+..++..+++++|+++||||+|..+.++++.++++|+.|
T Consensus 163 ~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 677888888888899999999999999999999999999876
No 32
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.46 E-value=2.2e-13 Score=108.52 Aligned_cols=94 Identities=28% Similarity=0.552 Sum_probs=79.6
Q ss_pred cCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------
Q psy17636 50 GADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------ 99 (222)
Q Consensus 50 g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------ 99 (222)
|...+.+..+|+++++++.++++|.++||..|+|+|.++|+.+++|+|++
T Consensus 6 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~ 85 (220)
T 1t6n_A 6 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSV 85 (220)
T ss_dssp --------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCE
T ss_pred CCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEE
Confidence 33334445679999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 165 (220)
T 1t6n_A 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 165 (220)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEc
Confidence
Q ss_pred -----------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEe
Q psy17636 100 -----------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQ 143 (222)
Q Consensus 100 -----------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v 143 (222)
...+..+++.+++++|+++||||++..++++++.++.+|+.|.+
T Consensus 166 Eah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~v 220 (220)
T 1t6n_A 166 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220 (220)
T ss_dssp SHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred CHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEeC
Confidence 35677788888889999999999999999999999999998753
No 33
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.43 E-value=8.1e-13 Score=122.65 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=40.5
Q ss_pred CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHH-HhCCCCCC
Q psy17636 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA-ALSGRDII 99 (222)
Q Consensus 57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~-il~g~dvi 99 (222)
.++|++++|++.+.+.+.+.||..|+|+|.++|+. +++|++++
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~l 50 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLL 50 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEE
Confidence 47899999999999999999999999999999999 78899988
No 34
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.8e-13 Score=130.94 Aligned_cols=162 Identities=11% Similarity=0.067 Sum_probs=117.4
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------- 99 (222)
Q Consensus 58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------- 99 (222)
..|..+++++.+...+...++..|||+|.++|+.++.|+|++
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~ 241 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSN 241 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHH
Confidence 467788888888888878888899999999999999999998
Q ss_pred ------------------------------------------------------------------HHHHHHHHhhCCCC
Q psy17636 100 ------------------------------------------------------------------EPQVRSICDHVRPN 113 (222)
Q Consensus 100 ------------------------------------------------------------------~~~l~~Il~~~~~~ 113 (222)
...+..++..++++
T Consensus 242 Q~~~~l~~~~~~VglltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~ 321 (1108)
T 3l9o_A 242 QKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 321 (1108)
T ss_dssp HHHHHHHHHTSSEEEECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHhCCccEEeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCC
Confidence 55688889999999
Q ss_pred CeEEEEccccchH--HHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-----------------------------
Q psy17636 114 RQTLLFSATFKKR--IEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ----------------------------- 162 (222)
Q Consensus 114 ~Q~~lfSAT~~~~--v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~----------------------------- 162 (222)
.|+++||||+|.. +.........+|..+...... +..+.++++....
T Consensus 322 ~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~ 399 (1108)
T 3l9o_A 322 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQI 399 (1108)
T ss_dssp SEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----
T ss_pred ceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhh
Confidence 9999999999764 446666667777766554432 2334544433211
Q ss_pred --------------------------CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCce-----------
Q psy17636 163 --------------------------TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYW----------- 202 (222)
Q Consensus 163 --------------------------~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~----------- 202 (222)
..+...++..+.. .+.+++||||+++.. .+ ..|...|+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~-~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~ 478 (1108)
T 3l9o_A 400 GDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKI 478 (1108)
T ss_dssp -------------------------CHHHHHHHHHHHHH-TTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHH
T ss_pred cccccccccccccccccccccccccchhHHHHHHHHHHh-cCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 1112223333333 235699999999866 66 777554443
Q ss_pred ----------------------------EEEecCCCCCChHHHhhcCC
Q psy17636 203 ----------------------------LIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 203 ----------------------------~~~lHg~~~q~~R~~~L~~~ 222 (222)
++.+||+|++.+|+..+.+|
T Consensus 479 ~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F 526 (1108)
T 3l9o_A 479 FNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILF 526 (1108)
T ss_dssp GGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHH
Confidence 79999999999999988764
No 35
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.41 E-value=2.6e-13 Score=126.09 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=39.8
Q ss_pred CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHH-HhCCCCCC
Q psy17636 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA-ALSGRDII 99 (222)
Q Consensus 58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~-il~g~dvi 99 (222)
++|++++|++.+.+.+++.||..|+|+|.++|+. +++|++++
T Consensus 1 ~~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~l 43 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNAL 43 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEE
T ss_pred CcHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEE
Confidence 4699999999999999999999999999999998 88999988
No 36
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.41 E-value=2e-12 Score=121.09 Aligned_cols=159 Identities=13% Similarity=0.141 Sum_probs=116.2
Q ss_pred CCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCC-CCC-----------------------------------
Q psy17636 56 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGR-DII----------------------------------- 99 (222)
Q Consensus 56 ~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~-dvi----------------------------------- 99 (222)
++.+|.++++++.+.+.+...| ..|+++|+++|+.++.+. +++
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P 148 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQP 148 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEES
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCc
Confidence 4678999999999999999988 899999999999988665 454
Q ss_pred -------------------------------------------------------------------------------H
Q psy17636 100 -------------------------------------------------------------------------------E 100 (222)
Q Consensus 100 -------------------------------------------------------------------------------~ 100 (222)
.
T Consensus 149 ~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~ 228 (773)
T 2xau_A 149 RRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILM 228 (773)
T ss_dssp CHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHH
Confidence 1
Q ss_pred HHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHh---hC
Q psy17636 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVE---FL 177 (222)
Q Consensus 101 ~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~---~~ 177 (222)
..+..|... .++.|++++|||++. +.++ .++.++..+.+... ...++++|..++..++....+..+.. ..
T Consensus 229 ~~l~~l~~~-~~~~~iIl~SAT~~~--~~l~-~~~~~~~vi~v~gr---~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~ 301 (773)
T 2xau_A 229 GLLKQVVKR-RPDLKIIIMSATLDA--EKFQ-RYFNDAPLLAVPGR---TYPVELYYTPEFQRDYLDSAIRTVLQIHATE 301 (773)
T ss_dssp HHHHHHHHH-CTTCEEEEEESCSCC--HHHH-HHTTSCCEEECCCC---CCCEEEECCSSCCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHh-CCCceEEEEeccccH--HHHH-HHhcCCCcccccCc---ccceEEEEecCCchhHHHHHHHHHHHHHHhc
Confidence 233344333 357899999999964 3444 45665555655433 23577777766666655443333332 23
Q ss_pred CCCeEEEEecccHH--HH-HHhHH-----------CCceEEEecCCCCCChHHHhhcCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIA-----------KNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~-----------~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..+++||||+++.+ .+ ..|.. .|+.+..+||+|++++|...+..|
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f 360 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPA 360 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhc
Confidence 46899999999976 66 77764 689999999999999999998765
No 37
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.36 E-value=5.3e-13 Score=104.74 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=62.7
Q ss_pred HHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEec
Q psy17636 131 ARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAV 207 (222)
Q Consensus 131 ~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lH 207 (222)
...|+.+|+.|.++..+.++.+|.|.++.++..+|...|.++|... .+++||||+++.. .+ ..|...|+++..+|
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 4578999999999888888899999999999999999998877653 4689999999976 88 99999999999999
Q ss_pred CCCCCChHHHhhcCC
Q psy17636 208 GILMCPKSPSRLSLV 222 (222)
Q Consensus 208 g~~~q~~R~~~L~~~ 222 (222)
|+|++.+|..++..|
T Consensus 86 g~~~~~~R~~~l~~F 100 (191)
T 2p6n_A 86 GGKDQEERTKAIEAF 100 (191)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999988754
No 38
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.35 E-value=2.8e-13 Score=125.55 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=36.9
Q ss_pred CCcCCCC--CCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC
Q psy17636 58 SSFGHFG--FDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99 (222)
Q Consensus 58 ~~f~~l~--l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi 99 (222)
++|++++ |++.+.+.+++.||..|+|+|.++++.+++|+|++
T Consensus 1 m~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~l 44 (702)
T 2p6r_A 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLL 44 (702)
T ss_dssp CCSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEE
T ss_pred CchhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEE
Confidence 4689999 99999999999999999999999999999999988
No 39
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.32 E-value=1.7e-12 Score=112.73 Aligned_cols=98 Identities=23% Similarity=0.223 Sum_probs=72.3
Q ss_pred HHHHHhhCC-----------CCCeEEEEccc-cchHHH-HHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHH
Q psy17636 103 VRSICDHVR-----------PNRQTLLFSAT-FKKRIE-KLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWL 169 (222)
Q Consensus 103 l~~Il~~~~-----------~~~Q~~lfSAT-~~~~v~-~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L 169 (222)
+..++..++ .++|+++|||| .|..+. .+...++. +.+........++.|.++.+ +|...|
T Consensus 172 ~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~---~~~~~l 244 (414)
T 3oiy_A 172 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---RSKEKL 244 (414)
T ss_dssp HHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEESS---CCHHHH
T ss_pred HHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeecc---CHHHHH
Confidence 666777665 78999999999 676654 33333333 34444556677899988766 456666
Q ss_pred HHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEE-EecCC
Q psy17636 170 THNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLI-QAVGI 209 (222)
Q Consensus 170 ~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~-~lHg~ 209 (222)
..++... .+++|||||++.. .+ ..|...|+++. .+||+
T Consensus 245 ~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~ 286 (414)
T 3oiy_A 245 VELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF 286 (414)
T ss_dssp HHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH
T ss_pred HHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc
Confidence 6666663 4799999999976 88 99999999998 99996
No 40
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.30 E-value=1.1e-11 Score=101.67 Aligned_cols=82 Identities=34% Similarity=0.535 Sum_probs=72.3
Q ss_pred CCcCCCC--CCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------------
Q psy17636 58 SSFGHFG--FDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------ 99 (222)
Q Consensus 58 ~~f~~l~--l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------ 99 (222)
.+|++++ +++.++++|.++||..|||+|.++||.++.|+|++
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 4577777 99999999999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17636 100 -------------------------------------------------------------------------------- 99 (222)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (222)
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence
Q ss_pred -------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCc
Q psy17636 100 -------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPI 139 (222)
Q Consensus 100 -------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~ 139 (222)
.+++..|++.++.++|+++||||+|.+++++++.+++++.
T Consensus 212 ~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 212 RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 6778899999999999999999999999999999998543
No 41
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.29 E-value=9.8e-12 Score=120.23 Aligned_cols=98 Identities=23% Similarity=0.229 Sum_probs=74.2
Q ss_pred HHHHHhhCC-----------CCCeEEEEccc-cchHHHH-HHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHH
Q psy17636 103 VRSICDHVR-----------PNRQTLLFSAT-FKKRIEK-LARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWL 169 (222)
Q Consensus 103 l~~Il~~~~-----------~~~Q~~lfSAT-~~~~v~~-l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L 169 (222)
+..+++.+| .++|+++|||| .|..+.. +....+ .+.+........++.|.++.+ +|...|
T Consensus 229 i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l----~i~v~~~~~~~~~i~~~~~~~---~k~~~L 301 (1104)
T 4ddu_A 229 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLL----NFTVGRLVSVARNITHVRISS---RSKEKL 301 (1104)
T ss_dssp HHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHT----CCCCCBCCCCCCCEEEEEESC---CCHHHH
T ss_pred HHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcce----eEEeccCCCCcCCceeEEEec---CHHHHH
Confidence 677777776 78999999999 6766553 333332 245555556778899998877 466667
Q ss_pred HHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEE-EecCC
Q psy17636 170 THNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLI-QAVGI 209 (222)
Q Consensus 170 ~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~-~lHg~ 209 (222)
..++... .+++|||||++.. .+ ..|...|+++. .+||+
T Consensus 302 ~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~ 343 (1104)
T 4ddu_A 302 VELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF 343 (1104)
T ss_dssp HHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH
T ss_pred HHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc
Confidence 6766663 4799999999976 88 99999999998 99993
No 42
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.23 E-value=3.8e-12 Score=118.59 Aligned_cols=61 Identities=11% Similarity=-0.050 Sum_probs=48.1
Q ss_pred EEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636 157 VINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPS 217 (222)
Q Consensus 157 ~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~ 217 (222)
++++...+|...|...+.... ...++||||+|+.. .| ..|+..|+++..|||++.+++|+-
T Consensus 437 ~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~i 501 (922)
T 1nkt_A 437 LIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATI 501 (922)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHH
Confidence 455666789988888776543 34589999999966 88 999999999999999976555543
No 43
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.20 E-value=5.6e-12 Score=121.60 Aligned_cols=93 Identities=11% Similarity=0.129 Sum_probs=72.3
Q ss_pred CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH
Q psy17636 112 PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF 191 (222)
Q Consensus 112 ~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~ 191 (222)
..+|+++||||++.. ..++..++.++..+.+........++.|.++ ..+|...|..++... .+++||||+|+..
T Consensus 214 ~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~L~~ll~~~--~~~~LVF~~t~~~ 287 (1054)
T 1gku_B 214 GEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESISTLSSILEKL--GTGGIIYARTGEE 287 (1054)
T ss_dssp ECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTTTHHHHTTS--CSCEEEEESSHHH
T ss_pred cCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHHHHHHHhhc--CCCEEEEEcCHHH
Confidence 457999999999988 7666667776666666666666778998877 355666666655543 4799999999976
Q ss_pred --HH-HHhHHCCceEEEecCCCC
Q psy17636 192 --EL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 192 --~l-~~L~~~g~~~~~lHg~~~ 211 (222)
.+ ..|... +++..+||+|.
T Consensus 288 a~~l~~~L~~~-~~v~~lhg~~~ 309 (1054)
T 1gku_B 288 AEEIYESLKNK-FRIGIVTATKK 309 (1054)
T ss_dssp HHHHHHTTTTS-SCEEECTTSSS
T ss_pred HHHHHHHHhhc-cCeeEEeccHH
Confidence 78 889888 99999999984
No 44
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.16 E-value=4.9e-11 Score=92.95 Aligned_cols=77 Identities=22% Similarity=0.153 Sum_probs=57.9
Q ss_pred CCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 146 IGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 146 ~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
...++++|+|.++.|+..+|...|.++|......+++||||+++.. .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus 13 ~~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 13 QGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp ---CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred cCCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 3356789999999999999999998888775456799999999976 88 99999999999999999999999988654
No 45
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.13 E-value=5e-11 Score=109.95 Aligned_cols=61 Identities=16% Similarity=0.059 Sum_probs=35.3
Q ss_pred CCchHHHHHHHHHhhC---CCCeEEEEecccHH--HH-HHhHHCC----ceEEEe--------cCCCCCChHHHhhcCC
Q psy17636 162 QTQKLTWLTHNLVEFL---STGSLLIFVTKKCF--EL-VNLIAKN----YWLIQA--------VGILMCPKSPSRLSLV 222 (222)
Q Consensus 162 ~~~K~~~L~~~l~~~~---~~~~~IVF~nt~~~--~l-~~L~~~g----~~~~~l--------Hg~~~q~~R~~~L~~~ 222 (222)
...|...|..++.+.. +.+++||||+++.. .+ ..|...| +++..+ ||+|++++|...+..|
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F 456 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 456 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHH
Confidence 3567788877776652 45799999999977 78 9999988 899999 4599999999998776
No 46
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.13 E-value=1.5e-10 Score=112.41 Aligned_cols=115 Identities=14% Similarity=0.054 Sum_probs=78.3
Q ss_pred HHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeE
Q psy17636 103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSL 182 (222)
Q Consensus 103 l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~ 182 (222)
...++..++.+.|++++|||.++....++...+.++..+.... .....+..++..... ......++......+++
T Consensus 741 ~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~--~~r~~i~~~~~~~~~---~~i~~~il~~l~~g~qv 815 (1151)
T 2eyq_A 741 HKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP--ARRLAVKTFVREYDS---MVVREAILREILRGGQV 815 (1151)
T ss_dssp HHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCC--CBCBCEEEEEEECCH---HHHHHHHHHHHTTTCEE
T ss_pred HHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCC--CCccccEEEEecCCH---HHHHHHHHHHHhcCCeE
Confidence 3444555566789999999988777777766666665543322 222345555443332 22222333344456899
Q ss_pred EEEecccHH--HH-HHhHHC--CceEEEecCCCCCChHHHhhcCC
Q psy17636 183 LIFVTKKCF--EL-VNLIAK--NYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 183 IVF~nt~~~--~l-~~L~~~--g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
+||||++.+ .+ ..|+.. |+++..+||+|++.+|+..+..|
T Consensus 816 lvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F 860 (1151)
T 2eyq_A 816 YYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF 860 (1151)
T ss_dssp EEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHH
Confidence 999999865 77 888877 89999999999999999988654
No 47
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.13 E-value=5.1e-10 Score=107.45 Aligned_cols=120 Identities=12% Similarity=0.073 Sum_probs=77.6
Q ss_pred HHHHHHHHhhCCCCCeEEEEccccchHHH--HHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcC---------C------
Q psy17636 100 EPQVRSICDHVRPNRQTLLFSATFKKRIE--KLARDVLTDPIKIVQGDIGEANTDITQVVINLP---------Q------ 162 (222)
Q Consensus 100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~--~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~---------~------ 162 (222)
...+..++..++++.|++++|||+|...+ ........++..+...... +..++++++... .
T Consensus 210 g~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1010)
T 2xgj_A 210 GVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFRE 287 (1010)
T ss_dssp HHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCH
T ss_pred hHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccch
Confidence 45567778888899999999999987532 3333334566666544332 234666655422 0
Q ss_pred ----------------------------------------CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHC
Q psy17636 163 ----------------------------------------TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAK 199 (222)
Q Consensus 163 ----------------------------------------~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~ 199 (222)
......|+..+... +..++||||+++.. .+ ..|...
T Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~ 366 (1010)
T 2xgj_A 288 ENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKL 366 (1010)
T ss_dssp HHHHHHHHTCC------------------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhC
Confidence 11122244444333 34599999999966 67 777765
Q ss_pred Cce---------------------------------------EEEecCCCCCChHHHhhcCC
Q psy17636 200 NYW---------------------------------------LIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 200 g~~---------------------------------------~~~lHg~~~q~~R~~~L~~~ 222 (222)
|+. ++.+||+|++.+|...+.+|
T Consensus 367 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F 428 (1010)
T 2xgj_A 367 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILF 428 (1010)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHH
Confidence 543 78899999999999887654
No 48
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.12 E-value=1.3e-10 Score=88.58 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=65.0
Q ss_pred CCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 148 EANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 148 ~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..+.+|+|+++.++..+|...|..++... +.+++||||+++.. .+ ..|...|+++..+||+|++.+|...+..|
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f 81 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEF 81 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 45778999999999999999998877765 45799999999976 88 99999999999999999999999988654
No 49
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.12 E-value=9.7e-11 Score=90.11 Aligned_cols=73 Identities=19% Similarity=0.121 Sum_probs=62.7
Q ss_pred CCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 149 ANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 149 ~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
++.+|+|+|+.++..+|...|..++... ..+++||||+++.. .+ ..|...|+++..+||+|++.+|...+..|
T Consensus 2 ~~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f 77 (172)
T 1t5i_A 2 SLHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF 77 (172)
T ss_dssp ---CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred ccCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHH
Confidence 3568999999999999999998877654 56799999999976 88 99999999999999999999999988754
No 50
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.10 E-value=1.7e-12 Score=118.71 Aligned_cols=100 Identities=11% Similarity=0.065 Sum_probs=65.9
Q ss_pred HHHHHHHHhhCC-CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCC
Q psy17636 100 EPQVRSICDHVR-PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLS 178 (222)
Q Consensus 100 ~~~l~~Il~~~~-~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~ 178 (222)
...+..|+..++ +++|+++||||++..+..++. .++..+.+... ++.. +...++..+.+.
T Consensus 294 ~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~~~-~~~~ll~~l~~~-- 354 (618)
T 2whx_A 294 VAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IPER-SWNTGFDWITDY-- 354 (618)
T ss_dssp HHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CCSS-CCSSSCHHHHHC--
T ss_pred HHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CCHH-HHHHHHHHHHhC--
Confidence 335666666654 689999999999887654332 24544444321 1111 111223444442
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.+++||||+|+.. .+ ..|...|+++..+||+ +|...+..|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F 397 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKT 397 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHH
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhh
Confidence 5799999999977 88 9999999999999994 677776543
No 51
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.09 E-value=1.6e-11 Score=114.01 Aligned_cols=62 Identities=6% Similarity=-0.022 Sum_probs=49.8
Q ss_pred EEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHh
Q psy17636 157 VINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSR 218 (222)
Q Consensus 157 ~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~ 218 (222)
++++...+|...|...+.... ...++||||+|+.. .| ..|+..|+++..|||++.+++|+-.
T Consensus 418 ~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii 483 (853)
T 2fsf_A 418 LVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIV 483 (853)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHH
Confidence 456666889999988776543 34689999999966 88 9999999999999999876666543
No 52
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.06 E-value=1.9e-10 Score=88.50 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=63.5
Q ss_pred CCCCCeeEEEEEcCCCc-hHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 148 EANTDITQVVINLPQTQ-KLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 148 ~~~~~i~q~~~~~~~~~-K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.++.+|+|+|+.|+..+ |...|..++.. ...+++||||+++.. .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f 80 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGS-ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRF 80 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTT-SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHH
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHh-CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 35678999999999855 99988776654 456799999999976 88 99999999999999999999999988654
No 53
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.05 E-value=5.3e-10 Score=107.23 Aligned_cols=59 Identities=17% Similarity=0.019 Sum_probs=45.7
Q ss_pred CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCc--------------------------------------
Q psy17636 163 TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNY-------------------------------------- 201 (222)
Q Consensus 163 ~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~-------------------------------------- 201 (222)
..+...|+..+... +..++||||+|+.. .+ ..|...|+
T Consensus 321 ~~~~~~li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 399 (997)
T 4a4z_A 321 KKTWPEIVNYLRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE 399 (997)
T ss_dssp TTHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh
Confidence 34555666666554 45799999999966 77 88877666
Q ss_pred -eEEEecCCCCCChHHHhhcCC
Q psy17636 202 -WLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 202 -~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.+..+||+|++.+|+..+.+|
T Consensus 400 ~gi~~~H~gl~~~~R~~v~~~F 421 (997)
T 4a4z_A 400 RGIAVHHGGLLPIVKELIEILF 421 (997)
T ss_dssp TTEEEECTTSCHHHHHHHHHHH
T ss_pred cCeeeecCCCCHHHHHHHHHHH
Confidence 479999999999999988754
No 54
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.03 E-value=3.5e-10 Score=86.18 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=60.9
Q ss_pred CCeeEEEEEcCCCc-hHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 151 TDITQVVINLPQTQ-KLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 151 ~~i~q~~~~~~~~~-K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
++|+|+|+.++..+ |...|..++... +.+++||||+++.. .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 76 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEF 76 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHH
Confidence 47999999999877 999998877654 56899999999876 78 99999999999999999999999988654
No 55
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.01 E-value=4.3e-09 Score=105.61 Aligned_cols=115 Identities=9% Similarity=0.015 Sum_probs=67.7
Q ss_pred HHhhCCCCCeEEEEccccchHHHHHHHHhcCCC-cEEEeCCCCCCCCCeeEEEEEcCCCchHHH-------HHHHHHhhC
Q psy17636 106 ICDHVRPNRQTLLFSATFKKRIEKLARDVLTDP-IKIVQGDIGEANTDITQVVINLPQTQKLTW-------LTHNLVEFL 177 (222)
Q Consensus 106 Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p-~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~-------L~~~l~~~~ 177 (222)
+...++++.|++++|||+++ .++++.-.-.++ ....+... .-+-.++.++...+....... +...+....
T Consensus 1076 i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~-~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 1153 (1724)
T 4f92_B 1076 ISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPN-VRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHS 1153 (1724)
T ss_dssp HHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGG-GCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHC
T ss_pred HHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCC-CCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhc
Confidence 33455778999999999986 456665332232 22233222 223346666555444322221 223344455
Q ss_pred CCCeEEEEecccHH--HH-HHh----HHC------------------------------CceEEEecCCCCCChHHHhhc
Q psy17636 178 STGSLLIFVTKKCF--EL-VNL----IAK------------------------------NYWLIQAVGILMCPKSPSRLS 220 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L----~~~------------------------------g~~~~~lHg~~~q~~R~~~L~ 220 (222)
..+++||||+|+.. .+ ..| ... ...++.+||+|++++|.....
T Consensus 1154 ~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~ 1233 (1724)
T 4f92_B 1154 PKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQ 1233 (1724)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHH
T ss_pred CCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHH
Confidence 56799999999854 22 222 111 235889999999999998766
Q ss_pred CC
Q psy17636 221 LV 222 (222)
Q Consensus 221 ~~ 222 (222)
+|
T Consensus 1234 lF 1235 (1724)
T 4f92_B 1234 LF 1235 (1724)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 56
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.89 E-value=6.7e-09 Score=92.76 Aligned_cols=60 Identities=15% Similarity=0.085 Sum_probs=27.2
Q ss_pred CchHHHHHHHHHhh---CCCCeEEEEecccHH--HH-HHhHHC------------CceEEEecCCCCCChHHHhhcCC
Q psy17636 163 TQKLTWLTHNLVEF---LSTGSLLIFVTKKCF--EL-VNLIAK------------NYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 163 ~~K~~~L~~~l~~~---~~~~~~IVF~nt~~~--~l-~~L~~~------------g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..|...|.++|.+. .+..++||||+++.. .+ ..|... |..+..+||+|++++|...+..|
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 448 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 448 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-------------------------
T ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHh
Confidence 44666676766554 345799999999977 77 888775 66777788899999999998876
No 57
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.83 E-value=6.7e-09 Score=86.88 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=62.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 152 DITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 152 ~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
+++|+++.++..+|...|..++.... .+++||||+++.+ .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f 74 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAF 74 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHH
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHh
Confidence 47899999999999999988776654 6899999999976 88 99999999999999999999999988654
No 58
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.81 E-value=4.5e-08 Score=91.92 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=25.9
Q ss_pred CchHHHHHHHHHhh---CCCCeEEEEecccHH--HH-HHhHH------------CCceEEEecCCCCCChHHHhhcCC
Q psy17636 163 TQKLTWLTHNLVEF---LSTGSLLIFVTKKCF--EL-VNLIA------------KNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 163 ~~K~~~L~~~l~~~---~~~~~~IVF~nt~~~--~l-~~L~~------------~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..|...|..+|.+. .+..++||||+++.. .+ ..|.. .|..+..+||+|++.+|...+..|
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F 689 (797)
T 4a2q_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (797)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC------------------------
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHh
Confidence 34666666666542 345799999999976 77 88876 377788889999999999998876
No 59
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.80 E-value=6.4e-08 Score=86.19 Aligned_cols=60 Identities=17% Similarity=0.074 Sum_probs=27.3
Q ss_pred CchHHHHHHHHHhh---CCCCeEEEEecccHH--HH-HHhHHCC------------ceEEEecCCCCCChHHHhhcCC
Q psy17636 163 TQKLTWLTHNLVEF---LSTGSLLIFVTKKCF--EL-VNLIAKN------------YWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 163 ~~K~~~L~~~l~~~---~~~~~~IVF~nt~~~--~l-~~L~~~g------------~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..|...|..+|.+. .+.+++||||+++.. .+ ..|...| .....+||+|++++|...+..|
T Consensus 370 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 447 (555)
T 3tbk_A 370 NPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAF 447 (555)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC----------------------
T ss_pred CHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHH
Confidence 34666666666543 245799999999976 77 8888764 4555666799999999998876
No 60
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.27 E-value=6.2e-10 Score=85.26 Aligned_cols=71 Identities=20% Similarity=0.121 Sum_probs=61.8
Q ss_pred CCeeEEEEEcCC-CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 151 TDITQVVINLPQ-TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 151 ~~i~q~~~~~~~-~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
++|+|+++.++. .+|...|..++.. ...+++||||+++.. .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f 76 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQ-PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRL 76 (170)
Confidence 468999999998 8999988776655 345799999999876 78 99999999999999999999999988765
No 61
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.78 E-value=4.9e-10 Score=103.31 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=56.2
Q ss_pred CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH
Q psy17636 112 PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF 191 (222)
Q Consensus 112 ~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~ 191 (222)
.++|+++||||++..+..++.. ..| +......++...+.. ++..+.+ ..+++||||+++.+
T Consensus 362 ~~~~vl~~SAT~~~~i~~~~~~--~~~--------------i~~v~~~~~~~~~~~-~l~~l~~--~~~~~lVF~~s~~~ 422 (673)
T 2wv9_A 362 GEAAAIFMTATPPGTSDPFPDT--NSP--------------VHDVSSEIPDRAWSS-GFEWITD--YAGKTVWFVASVKM 422 (673)
T ss_dssp TSCEEEEECSSCTTCCCSSCCC--SSC--------------EEEEECCCCSSCCSS-CCHHHHS--CCSCEEEECSSHHH
T ss_pred cCCcEEEEcCCCChhhhhhccc--CCc--------------eEEEeeecCHHHHHH-HHHHHHh--CCCCEEEEECCHHH
Confidence 6789999999998664432211 111 111111122222212 2233443 35799999999976
Q ss_pred --HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 192 --EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 192 --~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.+ ..|+..|+++..+|| ++|...+..|
T Consensus 423 ~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F 452 (673)
T 2wv9_A 423 SNEIAQCLQRAGKRVIQLNR----KSYDTEYPKC 452 (673)
T ss_dssp HHHHHHHHHTTTCCEEEECS----SSHHHHGGGG
T ss_pred HHHHHHHHHhCCCeEEEeCh----HHHHHHHHHH
Confidence 88 999999999999999 4788887765
No 62
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.77 E-value=2.4e-08 Score=100.30 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=65.1
Q ss_pred hCCCCCeEEEEccccchHHHHHHHHhcC-CC-c-EEEeCCCCCCCCCeeEEEEEcCCCchH---HH----HHHHHHhhCC
Q psy17636 109 HVRPNRQTLLFSATFKKRIEKLARDVLT-DP-I-KIVQGDIGEANTDITQVVINLPQTQKL---TW----LTHNLVEFLS 178 (222)
Q Consensus 109 ~~~~~~Q~~lfSAT~~~~v~~l~~~~l~-~p-~-~i~v~~~~~~~~~i~q~~~~~~~~~K~---~~----L~~~l~~~~~ 178 (222)
.++++.|++++|||+|+ .+++|+ |+. ++ . ...++. ..-+-.+++.++.+...... .. +...+.+...
T Consensus 240 ~~~~~~riI~LSATl~N-~~dvA~-wL~~~~~~~~~~~~~-~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 316 (1724)
T 4f92_B 240 MTQEDVRLIGLSATLPN-YEDVAT-FLRVDPAKGLFYFDN-SFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAG 316 (1724)
T ss_dssp HHTCCCEEEEEECSCTT-HHHHHH-HTTCCHHHHEEECCG-GGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCS
T ss_pred hCCCCCcEEEEecccCC-HHHHHH-HhCCCCCCCeEEECC-CCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhc
Confidence 45678999999999985 456664 444 22 1 112222 22233577777766553221 11 2223333344
Q ss_pred CCeEEEEecccHH--HH-HHhH----HC---------------------------------CceEEEecCCCCCChHHHh
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLI----AK---------------------------------NYWLIQAVGILMCPKSPSR 218 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~----~~---------------------------------g~~~~~lHg~~~q~~R~~~ 218 (222)
.+++||||+||.. .+ ..|. .. ...++.+||+|++++|...
T Consensus 317 ~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~v 396 (1724)
T 4f92_B 317 KNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLV 396 (1724)
T ss_dssp SCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHH
Confidence 5799999999844 33 3332 11 2347899999999999876
Q ss_pred hcC
Q psy17636 219 LSL 221 (222)
Q Consensus 219 L~~ 221 (222)
..+
T Consensus 397 E~~ 399 (1724)
T 4f92_B 397 EDL 399 (1724)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 63
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.76 E-value=9.8e-08 Score=91.14 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=26.9
Q ss_pred CchHHHHHHHHHhhC---CCCeEEEEecccHH--HH-HHhHHC------------CceEEEecCCCCCChHHHhhcCC
Q psy17636 163 TQKLTWLTHNLVEFL---STGSLLIFVTKKCF--EL-VNLIAK------------NYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 163 ~~K~~~L~~~l~~~~---~~~~~IVF~nt~~~--~l-~~L~~~------------g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..|...|..+|.+.. +..++||||+++.. .+ ..|... |..+..+||+|++.+|...+..|
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~F 689 (936)
T 4a2w_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (936)
T ss_dssp CHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHh
Confidence 345666666666542 34799999999977 77 999876 67777889999999999998876
No 64
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=98.71 E-value=1.6e-08 Score=80.24 Aligned_cols=70 Identities=17% Similarity=0.113 Sum_probs=60.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 152 DITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 152 ~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
.+.+.++.++..+|...|..++... ..+++||||+++.. .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f 77 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAF 77 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHH
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHH
Confidence 4677888899999999998877654 46799999999976 88 99999999999999999999999988654
No 65
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.68 E-value=2.2e-08 Score=93.71 Aligned_cols=105 Identities=17% Similarity=0.116 Sum_probs=61.7
Q ss_pred CCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccH-
Q psy17636 113 NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKC- 190 (222)
Q Consensus 113 ~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~- 190 (222)
+.|++++|||.++....++ ++.+.....+.........+...+ ++ ..+...+...+.+.. ..++++|||++..
T Consensus 516 ~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~~~~--~~-~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~ 590 (780)
T 1gm5_A 516 MVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQTML--VP-MDRVNEVYEFVRQEVMRGGQAFIVYPLIEE 590 (780)
T ss_dssp CCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCEECC--CC-SSTHHHHHHHHHHHTTTSCCBCCBCCCC--
T ss_pred CCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceEEEE--ec-cchHHHHHHHHHHHHhcCCcEEEEecchhh
Confidence 4799999999766543333 333322111221111122343322 22 334444556665543 3469999998541
Q ss_pred ---------HHH-HHhHH---CCceEEEecCCCCCChHHHhhcCC
Q psy17636 191 ---------FEL-VNLIA---KNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 191 ---------~~l-~~L~~---~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
+.+ ..|.. .|+.+..+||+|++.+|+..+..|
T Consensus 591 se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F 635 (780)
T 1gm5_A 591 SDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEF 635 (780)
T ss_dssp ------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 267 77877 588999999999999999988654
No 66
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.68 E-value=1.6e-07 Score=81.62 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=46.9
Q ss_pred CchHHHHHHHHHhh---CCCCeEEEEecccHH--HH-HHhHHCCceEEEecC--------CCCCChHHHhhcCC
Q psy17636 163 TQKLTWLTHNLVEF---LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVG--------ILMCPKSPSRLSLV 222 (222)
Q Consensus 163 ~~K~~~L~~~l~~~---~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg--------~~~q~~R~~~L~~~ 222 (222)
..|...|.++|.+. ...+++||||+++.. .+ ..|...|+++..+|| +|++.+|...+..|
T Consensus 342 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F 415 (494)
T 1wp9_A 342 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEF 415 (494)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHH
Confidence 45667777766664 356799999999876 78 999999999999999 99999999988754
No 67
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.67 E-value=8.1e-09 Score=90.96 Aligned_cols=82 Identities=10% Similarity=0.021 Sum_probs=53.3
Q ss_pred CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccH
Q psy17636 111 RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKC 190 (222)
Q Consensus 111 ~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~ 190 (222)
++++|+++||||+|..+..+ +..++..+.+... .+.. . + ..+ ...+.+. .+++||||+|+.
T Consensus 139 ~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~--~p~~--~-~-----~~~----~~~l~~~--~~~~lVF~~s~~ 199 (451)
T 2jlq_A 139 MGEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE--IPER--S-W-----NTG----FDWITDY--QGKTVWFVPSIK 199 (451)
T ss_dssp TTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC--CCSS--C-C-----SSS----CHHHHHC--CSCEEEECSSHH
T ss_pred CCCceEEEEccCCCccchhh---hcCCCceEecCcc--CCch--h-h-----HHH----HHHHHhC--CCCEEEEcCCHH
Confidence 45799999999998754332 2345554444311 1100 0 0 111 2333332 569999999997
Q ss_pred H--HH-HHhHHCCceEEEecCCCC
Q psy17636 191 F--EL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 191 ~--~l-~~L~~~g~~~~~lHg~~~ 211 (222)
+ .+ ..|...|+.+..+||++.
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~ 223 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF 223 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH
Confidence 6 88 999999999999999865
No 68
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.60 E-value=4.9e-09 Score=93.27 Aligned_cols=123 Identities=8% Similarity=0.079 Sum_probs=74.6
Q ss_pred HHHHHHHHhhCCCCCeEEEEccccchHHHH-HHHHhcCCCcEEEeCCCCC------CCCCeeEEEEEcCC----------
Q psy17636 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEK-LARDVLTDPIKIVQGDIGE------ANTDITQVVINLPQ---------- 162 (222)
Q Consensus 100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~-l~~~~l~~p~~i~v~~~~~------~~~~i~q~~~~~~~---------- 162 (222)
.+....++..++...+++++|||.+..... +....+.++..+.+..... .+..+....+..+.
T Consensus 239 ~~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 318 (510)
T 2oca_A 239 GKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKT 318 (510)
T ss_dssp HHHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCC
T ss_pred cccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccc
Confidence 567888888888889999999999766433 2222233444433332211 11112222222211
Q ss_pred -----------CchHHHHHHHHHhhC--CCCeEEEEecccHH-HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 163 -----------TQKLTWLTHNLVEFL--STGSLLIFVTKKCF-EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 163 -----------~~K~~~L~~~l~~~~--~~~~~IVF~nt~~~-~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..|...+...+.... ...++||||+++.. .+ ..|...|.++..+||+|++.+|+..+..|
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f 393 (510)
T 2oca_A 319 YQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLA 393 (510)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHH
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHH
Confidence 123334444444432 23467788874433 78 99999989999999999999999887654
No 69
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.58 E-value=1.7e-07 Score=86.28 Aligned_cols=103 Identities=10% Similarity=-0.009 Sum_probs=67.9
Q ss_pred CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccH
Q psy17636 112 PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKC 190 (222)
Q Consensus 112 ~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~ 190 (222)
..+|+++||||.+......+ .......+........ .+...+...+...|+..|.... ...++||||+|+.
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~----~~~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 456 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHT----DEMVEQIIRPTGLLDP----LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKK 456 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHC----SSCEEECCCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred cCCCEEEEecCCChhHHHhh----hCeeeeeecccCCCCC----eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 46899999999986543221 2222221211111111 1222233455566666666543 4569999999986
Q ss_pred H--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 191 F--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 191 ~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
. .+ ..|...|+++..+||+|++.+|...+..|
T Consensus 457 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f 491 (661)
T 2d7d_A 457 MSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDL 491 (661)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHH
Confidence 6 88 99999999999999999999999987653
No 70
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.48 E-value=3.8e-07 Score=84.06 Aligned_cols=103 Identities=16% Similarity=0.017 Sum_probs=67.0
Q ss_pred CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccH
Q psy17636 112 PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKC 190 (222)
Q Consensus 112 ~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~ 190 (222)
..+|+++||||.+......+ .......+........ .+...+...+...|+..|.... ...++||||+|+.
T Consensus 379 ~~~q~i~~SAT~~~~~~~~~----~~~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 450 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAHS----GRVVEQIIRPTGLLDP----LVRVKPTENQILDLMEGIRERAARGERTLVTVLTVR 450 (664)
T ss_dssp TCSEEEEEESSCCHHHHHHC----SEEEEECSCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred hcCCEEEEecCCCHHHHHhh----hCeeeeeeccCCCCCC----eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 36899999999986542221 1111111111111111 1222333556666666665543 4579999999986
Q ss_pred H--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 191 F--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 191 ~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
. .+ ..|...|+++..+||+|++.+|...+..|
T Consensus 451 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f 485 (664)
T 1c4o_A 451 MAEELTSFLVEHGIRARYLHHELDAFKRQALIRDL 485 (664)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHh
Confidence 6 88 99999999999999999999999987643
No 71
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.32 E-value=5e-07 Score=82.86 Aligned_cols=98 Identities=17% Similarity=0.129 Sum_probs=62.5
Q ss_pred HHHHHHHHhhCCCCCe--EEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC
Q psy17636 100 EPQVRSICDHVRPNRQ--TLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL 177 (222)
Q Consensus 100 ~~~l~~Il~~~~~~~Q--~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~ 177 (222)
..++..|++.++..+| ++++|||++..+. ...+....+... ....+. ... .+.. + ...
T Consensus 335 ~~~l~~Il~~l~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~~--~~~~i~----~~~--~~~~-----l-~~~ 394 (666)
T 3o8b_A 335 ILGIGTVLDQAETAGARLVVLATATPPGSVT------VPHPNIEEVALS--NTGEIP----FYG--KAIP-----I-EAI 394 (666)
T ss_dssp HHHHHHHHHHTTTTTCSEEEEEESSCTTCCC------CCCTTEEEEECB--SCSSEE----ETT--EEEC-----G-GGS
T ss_pred HHHHHHHHHhhhhcCCceEEEECCCCCcccc------cCCcceEEEeec--ccchhH----HHH--hhhh-----h-hhc
Confidence 5668889999988877 5677999987421 122222211110 001111 011 0100 1 123
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPS 217 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~ 217 (222)
..+++||||||+.+ .+ ..|+..|+++..+||+|+|++|.+
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er~~ 437 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPT 437 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGSCS
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHh
Confidence 46899999999977 88 999999999999999999998753
No 72
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.31 E-value=1.1e-06 Score=80.84 Aligned_cols=99 Identities=10% Similarity=-0.087 Sum_probs=73.0
Q ss_pred CeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeE-EEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH
Q psy17636 114 RQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQ-VVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF 191 (222)
Q Consensus 114 ~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q-~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~ 191 (222)
....++|+|...+..++...|- ...+.+.. +.....+.+ .++++...+|...+...+.... ...++||||+|+..
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY~--l~vv~IPt-nkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~ 486 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVYG--MEVVVIPT-HKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEK 486 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHSC--CCEEECCC-SSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHH
T ss_pred hHHeEECCCCchHHHHHHHHhC--CeEEEECC-CCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHH
Confidence 4688999999888888877773 33444433 333344444 4566777899999988887643 35699999999976
Q ss_pred --HH-HHhHHCCceEEEecCCCCCChH
Q psy17636 192 --EL-VNLIAKNYWLIQAVGILMCPKS 215 (222)
Q Consensus 192 --~l-~~L~~~g~~~~~lHg~~~q~~R 215 (222)
.+ ..|...|+++..|||++.+++|
T Consensus 487 sE~Ls~~L~~~Gi~~~vLhgkq~~rE~ 513 (822)
T 3jux_A 487 SELLSSMLKKKGIPHQVLNAKYHEKEA 513 (822)
T ss_dssp HHHHHHHHHTTTCCCEEECSCHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEeeCCchHHHH
Confidence 78 9999999999999999544444
No 73
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.24 E-value=1.6e-07 Score=82.51 Aligned_cols=89 Identities=11% Similarity=0.062 Sum_probs=52.9
Q ss_pred CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccH
Q psy17636 111 RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKC 190 (222)
Q Consensus 111 ~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~ 190 (222)
+.++|+++||||++..+..++.. ..+ +......++...+.. ++..+.+. .+++||||+++.
T Consensus 128 ~~~~~~l~~SAT~~~~~~~~~~~--~~~--------------~~~~~~~~~~~~~~~-~~~~l~~~--~~~~lVF~~s~~ 188 (440)
T 1yks_A 128 ANESATILMTATPPGTSDEFPHS--NGE--------------IEDVQTDIPSEPWNT-GHDWILAD--KRPTAWFLPSIR 188 (440)
T ss_dssp TTSCEEEEECSSCTTCCCSSCCC--SSC--------------EEEEECCCCSSCCSS-SCHHHHHC--CSCEEEECSCHH
T ss_pred cCCceEEEEeCCCCchhhhhhhc--CCC--------------eeEeeeccChHHHHH-HHHHHHhc--CCCEEEEeCCHH
Confidence 46799999999998765433221 011 111111222222222 22334432 579999999997
Q ss_pred H--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 191 F--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 191 ~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
. .+ ..|+..|+++..+|| ++|...+..|
T Consensus 189 ~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F 219 (440)
T 1yks_A 189 AANVMAASLRKAGKSVVVLNR----KTFEREYPTI 219 (440)
T ss_dssp HHHHHHHHHHHTTCCEEECCS----SSCC------
T ss_pred HHHHHHHHHHHcCCCEEEecc----hhHHHHHhhh
Confidence 6 88 999999999999999 4576666554
No 74
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.15 E-value=3e-07 Score=80.90 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=43.3
Q ss_pred CCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 161 PQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 161 ~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
....|...|.+++.. ...+++||||+++.. .+ ..|. +..+||++++.+|...+..|
T Consensus 332 ~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F 390 (472)
T 2fwr_A 332 NSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGF 390 (472)
T ss_dssp SCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHH
T ss_pred cChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHH
Confidence 345677778776766 456799999999876 67 7763 66899999999999988654
No 75
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.09 E-value=5.2e-07 Score=79.55 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=55.2
Q ss_pred CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccH
Q psy17636 111 RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKC 190 (222)
Q Consensus 111 ~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~ 190 (222)
++++|+++||||++..+..++.. ..|+.... . .++.. +...++..+.+. .+++||||+++.
T Consensus 141 ~~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~-~-------------~~~~~-~~~~~~~~l~~~--~~~~LVF~~s~~ 201 (459)
T 2z83_A 141 LGEAAAIFMTATPPGTTDPFPDS--NAPIHDLQ-D-------------EIPDR-AWSSGYEWITEY--AGKTVWFVASVK 201 (459)
T ss_dssp TTSCEEEEECSSCTTCCCSSCCC--SSCEEEEE-C-------------CCCSS-CCSSCCHHHHHC--CSCEEEECSCHH
T ss_pred cCCccEEEEEcCCCcchhhhccC--CCCeEEec-c-------------cCCcc-hhHHHHHHHHhc--CCCEEEEeCChH
Confidence 36899999999999765433211 23333211 0 01111 111112334333 579999999997
Q ss_pred H--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 191 F--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 191 ~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
. .+ ..|...|+++..+||+ +|...+..|
T Consensus 202 ~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f 232 (459)
T 2z83_A 202 MGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKC 232 (459)
T ss_dssp HHHHHHHHHHHTTCCEEEESTT----CCCCCGGGS
T ss_pred HHHHHHHHHHhcCCcEEecCHH----HHHHHHhhc
Confidence 6 88 9999999999999995 555555543
No 76
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.99 E-value=9.3e-06 Score=70.95 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=54.5
Q ss_pred CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccH
Q psy17636 111 RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKC 190 (222)
Q Consensus 111 ~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~ 190 (222)
+.++|++++|||++..+.++... ..|+ +.+. ..++. .+...++..+.+. .+++|||||++.
T Consensus 122 ~~~~~~l~~SAT~~~~~~~~~~~--~~~i-~~~~-------------~~~~~-~~~~~~~~~l~~~--~~~~lVF~~~~~ 182 (431)
T 2v6i_A 122 MGDAGAIFMTATPPGTTEAFPPS--NSPI-IDEE-------------TRIPD-KAWNSGYEWITEF--DGRTVWFVHSIK 182 (431)
T ss_dssp TTSCEEEEEESSCTTCCCSSCCC--SSCC-EEEE-------------CCCCS-SCCSSCCHHHHSC--SSCEEEECSSHH
T ss_pred CCCCcEEEEeCCCCcchhhhcCC--CCce-eecc-------------ccCCH-HHHHHHHHHHHcC--CCCEEEEeCCHH
Confidence 56899999999998743322110 0111 1110 01111 1112223444442 579999999997
Q ss_pred H--HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636 191 F--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL 221 (222)
Q Consensus 191 ~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~ 221 (222)
+ .+ ..|+..|+++..+||+ +|...+..
T Consensus 183 ~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~ 212 (431)
T 2v6i_A 183 QGAEIGTCLQKAGKKVLYLNRK----TFESEYPK 212 (431)
T ss_dssp HHHHHHHHHHHTTCCEEEESTT----THHHHTTH
T ss_pred HHHHHHHHHHHcCCeEEEeCCc----cHHHHHHh
Confidence 6 88 9999999999999997 56666654
No 77
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=97.84 E-value=6.8e-06 Score=75.64 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=36.6
Q ss_pred CCeEEEEecccHH--HH-HHhHHC------CceEEEecCC--------CCCChHHHhhcCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAK------NYWLIQAVGI--------LMCPKSPSRLSLV 222 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~------g~~~~~lHg~--------~~q~~R~~~L~~~ 222 (222)
.+++||||+++.. .+ ..|... |+++..+||+ |++.+|...+..|
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F 460 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKF 460 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHH
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHH
Confidence 5799999999977 78 988887 9999999999 9999999988754
No 78
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=97.76 E-value=1.4e-05 Score=65.63 Aligned_cols=63 Identities=14% Similarity=0.036 Sum_probs=52.0
Q ss_pred cCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHHC-CceEEEecCCCCCChHHHhhcCC
Q psy17636 160 LPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIAK-NYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 160 ~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~~-g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
+....|...|.++|.+.. ...++||||+++.. .+ ..|... |+++..+||++++++|...+..|
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F 159 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKF 159 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHh
Confidence 345789999988877653 35799999998866 77 888875 99999999999999999988654
No 79
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.60 E-value=5e-05 Score=72.78 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=52.0
Q ss_pred cCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHH-CCceEEEecCCCCCChHHHhhcCC
Q psy17636 160 LPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIA-KNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 160 ~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~-~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
+....|...|..++.. ...+++||||+++.. .+ ..|.. .|+++..+||+|++.+|+..+..|
T Consensus 485 ~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F 550 (968)
T 3dmq_A 485 WNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF 550 (968)
T ss_dssp TTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 4456789989887766 456799999999976 78 88884 699999999999999999988765
No 80
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=97.56 E-value=5.8e-05 Score=69.58 Aligned_cols=106 Identities=10% Similarity=-0.053 Sum_probs=67.6
Q ss_pred HHHHHHHHhhCC-CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCC
Q psy17636 100 EPQVRSICDHVR-PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLS 178 (222)
Q Consensus 100 ~~~l~~Il~~~~-~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~ 178 (222)
...+..++..++ .+.|++++|||. +.++.++... .....+..... ... +. + ... . + ..+...
T Consensus 257 g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~~~r-~~~--l~--~--~~~--~---l-~~l~~~-- 319 (677)
T 3rc3_A 257 GWAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEVRDYKR-LTP--IS--V--LDH--A---L-ESLDNL-- 319 (677)
T ss_dssp HHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEEEECCC-SSC--EE--E--CSS--C---C-CSGGGC--
T ss_pred hHHHHHHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEEEEeee-cch--HH--H--HHH--H---H-HHHHhc--
Confidence 556777777777 678999999995 4456665544 33333321110 100 10 0 010 0 0 112222
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
....||||+|+.+ .+ ..|...|+.+..+||+|++++|...+..|
T Consensus 320 ~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F 366 (677)
T 3rc3_A 320 RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKF 366 (677)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHH
Confidence 2456889999876 88 99999999999999999999999887654
No 81
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.49 E-value=0.00018 Score=65.04 Aligned_cols=50 Identities=12% Similarity=-0.034 Sum_probs=36.0
Q ss_pred HHHhhCCCCeEEEEecccHH--HH-HHhHHCCce--------EEEecCCCCCChHHHhhcCC
Q psy17636 172 NLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYW--------LIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 172 ~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~--------~~~lHg~~~q~~R~~~L~~~ 222 (222)
++......+++||||+++.. .+ ..|...+.. +..+||++++ +|...+..|
T Consensus 432 ~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F 492 (590)
T 3h1t_A 432 FMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRF 492 (590)
T ss_dssp HHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHH
T ss_pred HHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHH
Confidence 34443345799999999966 77 888766543 7899999875 688777643
No 82
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=97.01 E-value=0.0004 Score=61.22 Aligned_cols=61 Identities=15% Similarity=0.032 Sum_probs=49.6
Q ss_pred CCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHHC-CceEEEecCCCCCChHHHhhcCC
Q psy17636 162 QTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIAK-NYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 162 ~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~~-g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
...|...|.+++.+.. ...++||||+++.. .+ ..|... |+++..+||+|++.+|...+..|
T Consensus 323 ~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F 388 (500)
T 1z63_A 323 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKF 388 (500)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHh
Confidence 3568887877776653 45699999999866 67 888875 99999999999999999988654
No 83
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.94 E-value=0.0011 Score=52.56 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=25.1
Q ss_pred CHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC
Q psy17636 66 DEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99 (222)
Q Consensus 66 ~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi 99 (222)
++.+.+.+...+...++++|.++++.+.+|++++
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~ 80 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVI 80 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEE
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEE
Confidence 4445454554455567899999999999999887
No 84
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.00073 Score=63.43 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=51.1
Q ss_pred CCchHHHHHHHHHhhCC-CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 162 QTQKLTWLTHNLVEFLS-TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 162 ~~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
...|...|..+|..... ..++||||+.... .| ..|...|+++..+||++++.+|..++..|
T Consensus 554 ~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F 618 (800)
T 3mwy_W 554 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHF 618 (800)
T ss_dssp TCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTT
T ss_pred cChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHh
Confidence 35678888777776543 3599999998766 77 99999999999999999999999998876
No 85
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=96.84 E-value=0.0008 Score=61.62 Aligned_cols=60 Identities=10% Similarity=0.060 Sum_probs=47.0
Q ss_pred CchHHHHHHHHHhh--CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636 163 TQKLTWLTHNLVEF--LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV 222 (222)
Q Consensus 163 ~~K~~~L~~~l~~~--~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~ 222 (222)
..|...|..++... ....++||||+++.. .+ ..|...|+++..+||+|++.+|...+..|
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F 462 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERF 462 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHh
Confidence 45666665444432 235799999998876 67 89999999999999999999999988654
No 86
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=94.49 E-value=0.041 Score=44.55 Aligned_cols=60 Identities=18% Similarity=0.077 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCEEecCCCCCCCCCcCCCCCC-HHHHHHHHHCCC------CCCCHHHHhHHHHHhCCCCCC
Q psy17636 35 QEAQELRAKSGITVSGADPPYPVSSFGHFGFD-EVLMKALRKCEY------TSPTPIQAQAVPAALSGRDII 99 (222)
Q Consensus 35 ~~~~~~~~~~~i~v~g~~~p~~~~~f~~l~l~-~~l~~~l~~~g~------~~pTpIQ~~~ip~il~g~dvi 99 (222)
+++..+.+++++.+...+.+.+... ++ ..+-+.+...++ -+|+|.|.++++.++.+++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~~~~~~~~~~~~l~~~Q~~ai~~~l~~~~~l 132 (282)
T 1rif_A 66 GQIKKFCDNFGYKAWIDPQINEKEE-----LSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRI 132 (282)
T ss_dssp GGHHHHHHHTTCCEEECGGGGCCCC-----CCHHHHHHHHHTCCCEETTEECCCCHHHHHHHHHHHHHSEEE
T ss_pred HHHHHHHHhcCCeeEecCccCCCCC-----CCHHHHHhHHhHHHHhcCCCccCccHHHHHHHHHHHhcCCeE
Confidence 5677777888887765433211111 22 223233333344 489999999999998876555
No 87
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=88.91 E-value=0.54 Score=32.18 Aligned_cols=43 Identities=7% Similarity=-0.034 Sum_probs=32.0
Q ss_pred HHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCC
Q psy17636 169 LTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 169 L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~ 211 (222)
|...+....+..+++|+|.+-.. .. ..|+..|+++..|.|++.
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 43444444445689999987544 66 999999999999999874
No 88
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=87.37 E-value=0.71 Score=32.40 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=30.7
Q ss_pred HHHHHHhhCCC-CeEEEEe-cccHH--HH-HHhHHCCceEEEecCCCC
Q psy17636 169 LTHNLVEFLST-GSLLIFV-TKKCF--EL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 169 L~~~l~~~~~~-~~~IVF~-nt~~~--~l-~~L~~~g~~~~~lHg~~~ 211 (222)
+...+....+. .++||+| ++-.. .. ..|+..|+++..|.|++.
T Consensus 78 ~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 78 IYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 33334443345 6899999 45433 66 899999999999999875
No 89
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=87.28 E-value=0.3 Score=47.08 Aligned_cols=24 Identities=8% Similarity=0.030 Sum_probs=18.0
Q ss_pred HHHHHHHhhCCCCCeEEEEccccch
Q psy17636 101 PQVRSICDHVRPNRQTLLFSATFKK 125 (222)
Q Consensus 101 ~~l~~Il~~~~~~~Q~~lfSAT~~~ 125 (222)
.....|...+| ++++++||||...
T Consensus 417 ~~~~~I~~~~p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 417 EAQKNLKKKFK-RYYQFGFTGTPIF 440 (1038)
T ss_dssp HHHHHHHHHCS-SEEEEEEESSCCC
T ss_pred HHHHHHHHhCC-cccEEEEeCCccc
Confidence 44566777775 5899999999853
No 90
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=84.10 E-value=0.76 Score=31.34 Aligned_cols=35 Identities=11% Similarity=-0.022 Sum_probs=27.7
Q ss_pred CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCC
Q psy17636 177 LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 177 ~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~ 211 (222)
.+..+++|+|.+-.. .. ..|...|+++..|.|++.
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 345689999986533 66 999999999999999863
No 91
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=83.26 E-value=1.1 Score=30.03 Aligned_cols=34 Identities=9% Similarity=0.012 Sum_probs=27.7
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~ 211 (222)
+..+++|+|.+-.. .. ..|+..|+++..|.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 45689999987544 66 899999999999999864
No 92
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=81.66 E-value=4.5 Score=25.87 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=25.6
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILMC 212 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~q 212 (222)
+..+++|+|++-.. .. ..|...|++ +..+ |++..
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~~ 77 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLKD 77 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETTT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHHH
Confidence 44689999987544 66 899999995 6666 88764
No 93
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=81.41 E-value=1.1 Score=30.11 Aligned_cols=34 Identities=12% Similarity=0.006 Sum_probs=27.4
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~ 211 (222)
+..+++|+|++-.. .. ..|...|+++..|.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 44689999987533 66 899999999999999864
No 94
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=80.50 E-value=1.3 Score=29.15 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=27.3
Q ss_pred CeEEEEecccHH--HH-HHhHHCCceEEEecCCCCC
Q psy17636 180 GSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMC 212 (222)
Q Consensus 180 ~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q 212 (222)
.+++|+|.+-.. .. ..|+..|+++..|.|++..
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 89 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQA 89 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGGC
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHHH
Confidence 789999987544 66 8899999998899999864
No 95
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=80.15 E-value=1.9 Score=29.23 Aligned_cols=41 Identities=7% Similarity=-0.020 Sum_probs=29.6
Q ss_pred HHHHhhCCCCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCC
Q psy17636 171 HNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 171 ~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
..+....+..+++|+|.+-.. .. ..|...|+. +..|.|++.
T Consensus 50 ~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 50 AFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 334443345689999987433 66 889999995 889999874
No 96
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=77.28 E-value=4.2 Score=33.85 Aligned_cols=53 Identities=11% Similarity=-0.009 Sum_probs=40.5
Q ss_pred cCCCchHHHHHHHHHhhCCC-CeEEEEecccHH--HH-HHhHHCCceEEEecCCCCC
Q psy17636 160 LPQTQKLTWLTHNLVEFLST-GSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMC 212 (222)
Q Consensus 160 ~~~~~K~~~L~~~l~~~~~~-~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q 212 (222)
+..+.|+..|-++|...... .+++||++.... -+ .+|...|++..-+-|....
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~ 161 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK 161 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh
Confidence 34678998887776665433 499999997766 45 8888899999999998544
No 97
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=75.99 E-value=2.6 Score=28.44 Aligned_cols=34 Identities=9% Similarity=0.063 Sum_probs=26.8
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
+..+++|+|++-.. .. ..|+..|+. +..|.|++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 34689999987544 66 899999995 888999864
No 98
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=75.96 E-value=3.5 Score=28.67 Aligned_cols=43 Identities=12% Similarity=0.150 Sum_probs=30.9
Q ss_pred HHHHHHhhCCCCeEEEEecc--c--HHHH-HHhHHCCceEEEecCCCC
Q psy17636 169 LTHNLVEFLSTGSLLIFVTK--K--CFEL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 169 L~~~l~~~~~~~~~IVF~nt--~--~~~l-~~L~~~g~~~~~lHg~~~ 211 (222)
|...+....+..+++|+|.+ + .... ..|+..|+++..|.|++.
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 43444444445689999975 3 2366 889999999999999874
No 99
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=74.70 E-value=3.3 Score=37.51 Aligned_cols=103 Identities=8% Similarity=0.029 Sum_probs=52.9
Q ss_pred CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-C------ch--HHHHHHHHHhhC--CCC
Q psy17636 112 PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-T------QK--LTWLTHNLVEFL--STG 180 (222)
Q Consensus 112 ~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~------~K--~~~L~~~l~~~~--~~~ 180 (222)
..+-++++|||+++ ...+....--++..+.++.. ...++. .++.++. . +. ...+.+.|.+.. .++
T Consensus 374 ~~~~~il~SaTL~p-~~~~~~~lGl~~~~~~~~sp-f~~~~~--~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g 449 (620)
T 4a15_A 374 KESKTIHMSGTLDP-FDFYSDITGFEIPFKKIGEI-FPPENR--YIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKK 449 (620)
T ss_dssp GGSEEEEEESSCCS-HHHHHHHHCCCCCEEECCCC-SCGGGE--EEEEECCC-------CHHHHHHHHHHHHHHHHHHCS
T ss_pred hCCeEEEEccCCCc-HHHHHHHhCCCceeeecCCC-CCHHHe--EEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45678999999976 44444433222445544432 122332 2222221 1 11 122323332221 257
Q ss_pred eEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636 181 SLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL 221 (222)
Q Consensus 181 ~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~ 221 (222)
.++||++|... .+ ..|...+.+ ...+|+..+|...|..
T Consensus 450 ~~lvlF~Sy~~l~~v~~~l~~~~~~---~~q~~~~~~~~~ll~~ 490 (620)
T 4a15_A 450 NTIVYFPSYSLMDRVENRVSFEHMK---EYRGIDQKELYSMLKK 490 (620)
T ss_dssp CEEEEESCHHHHHHHTSSCCSCCEE---CCTTCCSHHHHHHHHH
T ss_pred CEEEEeCCHHHHHHHHHHHHhcchh---ccCCCChhHHHHHHHH
Confidence 89999998765 66 666622322 5556666677776654
No 100
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=74.31 E-value=9.6 Score=36.30 Aligned_cols=81 Identities=12% Similarity=-0.010 Sum_probs=52.3
Q ss_pred CeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCee-EEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH
Q psy17636 114 RQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDIT-QVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF 191 (222)
Q Consensus 114 ~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~-q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~ 191 (222)
.....+|.|...+..++...|--+ .+.+.+. ....... ...++....+|+..+...+.+.. ...|+||+|.|...
T Consensus 379 ~kLsGMTGTA~tE~~Ef~~iY~l~--Vv~IPTn-~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~ 455 (997)
T 2ipc_A 379 EKRAGMTGTAKTEEKEFQEIYGMD--VVVVPTN-RPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEK 455 (997)
T ss_dssp SEEEEEESSCGGGHHHHHHHHCCC--EEECCCS-SCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHH
T ss_pred hHheecCCCchHHHHHHHHHhCCC--EEEcCCC-CCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHH
Confidence 356788999987777777766434 3444332 2222333 33445555889988877776553 34699999999866
Q ss_pred --HH-HHhH
Q psy17636 192 --EL-VNLI 197 (222)
Q Consensus 192 --~l-~~L~ 197 (222)
.| ..|+
T Consensus 456 SE~LS~~L~ 464 (997)
T 2ipc_A 456 SERLSQMLK 464 (997)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 66 7777
No 101
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=72.47 E-value=6.1 Score=26.72 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=27.6
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMC 212 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q 212 (222)
+..+++|+|++-.. .. ..|+..|+....|.|++..
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 92 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYD 92 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHHH
Confidence 45689999987544 66 8999999976889998764
No 102
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=72.27 E-value=2.2 Score=40.50 Aligned_cols=21 Identities=10% Similarity=-0.031 Sum_probs=19.7
Q ss_pred HCCCCCCCHHHHhHHHHHhCCC
Q psy17636 75 KCEYTSPTPIQAQAVPAALSGR 96 (222)
Q Consensus 75 ~~g~~~pTpIQ~~~ip~il~g~ 96 (222)
-+|| .|||||..+||.++.|+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~ 95 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK 95 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS
T ss_pred HhCC-CCcHHHHhhcccccCCc
Confidence 3699 99999999999999998
No 103
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=71.65 E-value=2.6 Score=29.57 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=26.7
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
+..+++|+|++-.. .. ..|...|++ +..|.|++.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 34689999987533 66 888899995 888999874
No 104
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=71.58 E-value=2.8 Score=30.21 Aligned_cols=34 Identities=3% Similarity=0.085 Sum_probs=27.3
Q ss_pred CCCeEEEEeccc---HH-HH-HHhHHCCceEEEecCCCC
Q psy17636 178 STGSLLIFVTKK---CF-EL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~---~~-~l-~~L~~~g~~~~~lHg~~~ 211 (222)
+..++||+|.+- .. .. ..|+..|+++..|.|++.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 346899999864 22 67 999999999999999874
No 105
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=70.90 E-value=3.9 Score=29.39 Aligned_cols=33 Identities=0% Similarity=-0.103 Sum_probs=26.3
Q ss_pred CCeEEEEeccc--HHHH-HHhHHCCc-eEEEecCCCC
Q psy17636 179 TGSLLIFVTKK--CFEL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 179 ~~~~IVF~nt~--~~~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
..++||||++- .... ..|+..|+ ++..|.|++.
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 46899999864 3366 88999999 5999999984
No 106
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=69.91 E-value=1.9 Score=32.44 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.1
Q ss_pred HHHCCCCCCCHHHHhHHHHHhCCCCCC
Q psy17636 73 LRKCEYTSPTPIQAQAVPAALSGRDII 99 (222)
Q Consensus 73 l~~~g~~~pTpIQ~~~ip~il~g~dvi 99 (222)
....+...|+|.|.++++.+++|++++
T Consensus 26 ~~~~~~~~l~~~Q~~~i~~~~~~~~~l 52 (216)
T 3b6e_A 26 ASPEPELQLRPYQMEVAQPALEGKNII 52 (216)
T ss_dssp TCCSCCCCCCHHHHHHHHHHHTTCCEE
T ss_pred cCccCCCCchHHHHHHHHHHhcCCCEE
Confidence 334466799999999999999999988
No 107
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=68.46 E-value=3.3 Score=29.25 Aligned_cols=34 Identities=3% Similarity=-0.097 Sum_probs=26.9
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
+..+++|+|.+-.. .. ..|+..|+. +..|.|++.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 34689999987544 66 889999995 999999864
No 108
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=68.36 E-value=3.6 Score=29.26 Aligned_cols=35 Identities=9% Similarity=0.074 Sum_probs=27.1
Q ss_pred CCCCeEEEEeccc--HHHH-HHhHHCCc-eEEEecCCCC
Q psy17636 177 LSTGSLLIFVTKK--CFEL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 177 ~~~~~~IVF~nt~--~~~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
.+..+++|+|.+- .... ..|+..|+ ++..|.|++.
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 3456899999764 3366 88999999 5889999874
No 109
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=67.66 E-value=3.7 Score=29.05 Aligned_cols=33 Identities=12% Similarity=0.053 Sum_probs=26.4
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
..+++|+|.+-.. .. ..|...|+. +..|.|++.
T Consensus 91 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 91 AKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4689999987544 66 889999995 888999874
No 110
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=64.88 E-value=4.5 Score=28.53 Aligned_cols=33 Identities=6% Similarity=-0.150 Sum_probs=26.3
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCc-eEEEecCCCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
..+++|+|.+-.. .. ..|...|+ ++..|.|++.
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 4689999986433 56 88889999 5889999984
No 111
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=64.26 E-value=4.8 Score=28.78 Aligned_cols=34 Identities=9% Similarity=0.063 Sum_probs=26.1
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
+..+++|+|++-.. .. ..|...|+. +..|.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 34689999987544 66 899999995 888888764
No 112
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=54.59 E-value=18 Score=28.59 Aligned_cols=36 Identities=6% Similarity=-0.105 Sum_probs=27.7
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCc-eEEEecCCCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNY-WLIQAVGILMCP 213 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~-~~~~lHg~~~q~ 213 (222)
...++||+|.+-.. .. ..|...|+ ++..|.|++..=
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W 268 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 268 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHH
Confidence 34689999986433 66 88899999 589999998754
No 113
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=54.30 E-value=9.2 Score=27.67 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=26.3
Q ss_pred CCeEEEEeccc-----------HHHH-HHhHHCCceEEEecCCCC
Q psy17636 179 TGSLLIFVTKK-----------CFEL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 179 ~~~~IVF~nt~-----------~~~l-~~L~~~g~~~~~lHg~~~ 211 (222)
..++||+|.+- ...+ ..|...|+++..|.|++.
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~ 137 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 137 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHH
Confidence 45899999754 2256 889999999999999864
No 114
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=53.34 E-value=16 Score=29.00 Aligned_cols=34 Identities=9% Similarity=0.045 Sum_probs=26.4
Q ss_pred CCCeEEEEecccHH--HH-HHhH-HCCc-eEEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLI-AKNY-WLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~-~~g~-~~~~lHg~~~ 211 (222)
...++||||.+-.. .. ..|. ..|+ ++..|.|++.
T Consensus 232 ~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 270 (285)
T 1uar_A 232 KDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWT 270 (285)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHH
Confidence 44689999987544 56 8888 8999 6889999864
No 115
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=50.14 E-value=44 Score=29.39 Aligned_cols=39 Identities=5% Similarity=-0.100 Sum_probs=23.0
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhh
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L 219 (222)
.++.++||++|... .+ . ..+.++..=..+++..++.+.+
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~---~~~~~v~~q~~~~~~~~~~~~~ 433 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMS---RISLPKYVESEDSSVEDLYSAI 433 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHT---TCCSSEEECCSSCCHHHHHHHT
T ss_pred CCCCEEEEecCHHHHHHHHH---hcCCcEEEcCCCCCHHHHHHHH
Confidence 35799999998765 55 4 2455554433355544444443
No 116
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=49.54 E-value=21 Score=28.13 Aligned_cols=34 Identities=3% Similarity=-0.155 Sum_probs=25.8
Q ss_pred CCCeEEEEecccH--H-HH-HHhHHCCc-eEEEecCCCC
Q psy17636 178 STGSLLIFVTKKC--F-EL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~--~-~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
+..+++|+|++-. . .. ..|+..|+ ++..|.|++.
T Consensus 76 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 114 (277)
T 3aay_A 76 NEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRK 114 (277)
T ss_dssp TTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHH
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHH
Confidence 3468999998742 2 66 88999999 6889998753
No 117
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=49.33 E-value=14 Score=29.07 Aligned_cols=34 Identities=9% Similarity=-0.077 Sum_probs=26.6
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
+..++||||.+-.. .. ..|...|++ +..|.|++.
T Consensus 222 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 259 (271)
T 1e0c_A 222 PDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWG 259 (271)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 44689999987533 66 888999994 889998864
No 118
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=49.25 E-value=28 Score=28.96 Aligned_cols=93 Identities=9% Similarity=-0.042 Sum_probs=59.3
Q ss_pred HHHHHHHHHC-CCCCCCHHHHhHHHHHhCCCCCCHHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCC
Q psy17636 67 EVLMKALRKC-EYTSPTPIQAQAVPAALSGRDIIEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGD 145 (222)
Q Consensus 67 ~~l~~~l~~~-g~~~pTpIQ~~~ip~il~g~dvi~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~ 145 (222)
+.+.+.+++. || +|||+|.++||.+++|+|+ ++.+.|=+....-
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~------------------lv~apTGsGKT~~---------------- 52 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSF------------------TMVAPTGVGKTTF---------------- 52 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCE------------------ECCSCSSSSHHHH----------------
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCE------------------EEEeCCCCCHHHH----------------
Confidence 3455666664 66 8999999999999888664 2333333222110
Q ss_pred CCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHH---CCceEEEecCCCCCChHH
Q psy17636 146 IGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIA---KNYWLIQAVGILMCPKSP 216 (222)
Q Consensus 146 ~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~---~g~~~~~lHg~~~q~~R~ 216 (222)
++.-.+.......++||-++|+.- ++ ..++. .|+++..+||+.+..+|.
T Consensus 53 ----------------------~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 107 (414)
T 3oiy_A 53 ----------------------GMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKE 107 (414)
T ss_dssp ----------------------HHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHH
T ss_pred ----------------------HHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHH
Confidence 111111111335689999999854 55 55555 689999999999985553
No 119
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=43.72 E-value=18 Score=27.79 Aligned_cols=34 Identities=6% Similarity=-0.035 Sum_probs=26.9
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~ 211 (222)
+..++|++|++-.. .. ..|...|.++..+.|++.
T Consensus 183 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 183 PGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMH 219 (230)
T ss_dssp TTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHH
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHH
Confidence 35689999987644 56 888889978889999874
No 120
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=42.73 E-value=28 Score=26.08 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=27.8
Q ss_pred CeEEEEecccHH--HH-HHhHHC-----CceEEEecCCCCCChHHHhh
Q psy17636 180 GSLLIFVTKKCF--EL-VNLIAK-----NYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 180 ~~~IVF~nt~~~--~l-~~L~~~-----g~~~~~lHg~~~q~~R~~~L 219 (222)
.++||.|.|+.- ++ ..++.. |+++..+||+.+..++...+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 130 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 130 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHH
Confidence 389999998843 44 444332 78999999998866655443
No 121
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=42.35 E-value=29 Score=27.22 Aligned_cols=34 Identities=9% Similarity=-0.008 Sum_probs=25.7
Q ss_pred CCCeEEEEecccH-H--HH-HHhHHCCc-eEEEecCCCC
Q psy17636 178 STGSLLIFVTKKC-F--EL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~-~--~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
+..+++|+|++-. . .+ ..|+..|+ ++..|.|++.
T Consensus 80 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~ 118 (271)
T 1e0c_A 80 PEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLT 118 (271)
T ss_dssp TTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 3468899997643 2 67 88999999 4888998864
No 122
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=41.30 E-value=15 Score=29.38 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=26.9
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCc-eEEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
+..++++||++-.. .. ..|...|+ ++..|.|++.
T Consensus 180 kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 180 KDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 45789999987543 66 88889999 6889999874
No 123
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=41.24 E-value=35 Score=26.03 Aligned_cols=33 Identities=12% Similarity=-0.101 Sum_probs=29.3
Q ss_pred CeEEEEecccHHHH-HHhHHCCceEEEecCCCCC
Q psy17636 180 GSLLIFVTKKCFEL-VNLIAKNYWLIQAVGILMC 212 (222)
Q Consensus 180 ~~~IVF~nt~~~~l-~~L~~~g~~~~~lHg~~~q 212 (222)
.++-||+|...+.+ ......+..+.-|||+-+.
T Consensus 54 ~~VgVfvn~~~~~i~~~~~~~~ld~vQLHG~e~~ 87 (203)
T 1v5x_A 54 VRVGVFRDQPPEEVLRLMEEARLQVAQLHGEEPP 87 (203)
T ss_dssp EEEEEESSCCHHHHHHHHHHTTCSEEEECSCCCH
T ss_pred CEEEEEeCCCHHHHHHHHHhhCCCEEEECCCCCH
Confidence 58999999988888 8888999999999998765
No 124
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=40.84 E-value=34 Score=27.78 Aligned_cols=33 Identities=9% Similarity=-0.068 Sum_probs=25.7
Q ss_pred CCCeEEEEecccH-H--HH-HHhHHCCce-EEEecCCC
Q psy17636 178 STGSLLIFVTKKC-F--EL-VNLIAKNYW-LIQAVGIL 210 (222)
Q Consensus 178 ~~~~~IVF~nt~~-~--~l-~~L~~~g~~-~~~lHg~~ 210 (222)
+..++||||++-. . .. ..|+..|+. +..|.|++
T Consensus 110 ~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 110 RDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp TTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 3468999998643 2 77 899999994 88998875
No 125
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=40.17 E-value=27 Score=27.54 Aligned_cols=34 Identities=12% Similarity=-0.042 Sum_probs=26.1
Q ss_pred CCCeEEEEeccc---HHHH-HHhHHCCc-eEEEecCCCC
Q psy17636 178 STGSLLIFVTKK---CFEL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~---~~~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
+..++||||.+- ...+ ..|+..|+ ++..|.|++.
T Consensus 85 ~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~ 123 (280)
T 1urh_A 85 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLA 123 (280)
T ss_dssp TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 346899999753 3367 88999999 6889998764
No 126
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=39.44 E-value=22 Score=31.16 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=27.7
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~ 211 (222)
+..++++||++-.. .. ..|+..|+++..|.|++.
T Consensus 523 ~~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~ 559 (565)
T 3ntd_A 523 KDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYR 559 (565)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CcCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHH
Confidence 44689999987544 66 899999999999999874
No 127
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=38.58 E-value=34 Score=25.93 Aligned_cols=57 Identities=18% Similarity=0.095 Sum_probs=35.0
Q ss_pred CchHHH-HHHHHHhh---CCCCeEEEEecccHH--HH-HHhHH----C-CceEEEecCCCCCChHHHhh
Q psy17636 163 TQKLTW-LTHNLVEF---LSTGSLLIFVTKKCF--EL-VNLIA----K-NYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 163 ~~K~~~-L~~~l~~~---~~~~~~IVF~nt~~~--~l-~~L~~----~-g~~~~~lHg~~~q~~R~~~L 219 (222)
.-|... ++-.+... ....++||.|.|+.- ++ ..++. . |+++..++|+.+..++...+
T Consensus 72 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 140 (230)
T 2oxc_A 72 TGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL 140 (230)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc
Confidence 566644 33333332 223589999998843 44 44433 2 78999999998876665543
No 128
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=37.52 E-value=24 Score=27.26 Aligned_cols=21 Identities=19% Similarity=0.023 Sum_probs=19.1
Q ss_pred CCCCHHHHhHHHHHhCCCCCC
Q psy17636 79 TSPTPIQAQAVPAALSGRDII 99 (222)
Q Consensus 79 ~~pTpIQ~~~ip~il~g~dvi 99 (222)
..|+|.|.++++.++.+++++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~l 112 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGC 112 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEE
T ss_pred CCcCHHHHHHHHHHHhCCCEE
Confidence 589999999999999998876
No 129
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=37.27 E-value=13 Score=25.73 Aligned_cols=33 Identities=9% Similarity=0.061 Sum_probs=25.5
Q ss_pred CCeEEEEecccH-----------HHH-HHhHHCCceEEEecCCCC
Q psy17636 179 TGSLLIFVTKKC-----------FEL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 179 ~~~~IVF~nt~~-----------~~l-~~L~~~g~~~~~lHg~~~ 211 (222)
..++||+|++-. ..+ ..|...|+++..|.|++.
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~ 127 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 127 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHH
Confidence 358999997531 246 889999999999999874
No 130
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=36.84 E-value=52 Score=25.39 Aligned_cols=40 Identities=8% Similarity=-0.073 Sum_probs=27.5
Q ss_pred CCeEEEEecccHH--HH-HH----hHHCCceEEEecCCCCCChHHHh
Q psy17636 179 TGSLLIFVTKKCF--EL-VN----LIAKNYWLIQAVGILMCPKSPSR 218 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~----L~~~g~~~~~lHg~~~q~~R~~~ 218 (222)
..++||.|.|+.- ++ .. ....|+++..++|+.+...+...
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 157 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA 157 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHH
Confidence 3579999999843 33 33 33448999999999876554443
No 131
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=36.81 E-value=40 Score=22.26 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=42.3
Q ss_pred cEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEeccc-----HH---HH-HHhHHCCceEEEecC
Q psy17636 139 IKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK-----CF---EL-VNLIAKNYWLIQAVG 208 (222)
Q Consensus 139 ~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~-----~~---~l-~~L~~~g~~~~~lHg 208 (222)
+.|.....+ ..+.+++....++.......++..|.+..+-..+-+|||.. .+ .| +..+..|+=...+.+
T Consensus 9 v~vrfk~~g-~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys~ 86 (91)
T 3w1s_C 9 IQIKFQPIG-SIGQLKPSVCKISMSQSFAMVILFLKRRLKMDHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYCA 86 (91)
T ss_dssp EEEEEEECC-C-------EEEEETTSBHHHHHHHHHHHHTCSCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEEC
T ss_pred EEEEEEecC-CCCcccccEEEcCCCCCHHHHHHHHHHhhCCceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEeC
Confidence 344433333 34468888888999999999989998877667889999864 12 66 666666665555543
No 132
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=36.44 E-value=41 Score=30.04 Aligned_cols=100 Identities=13% Similarity=0.112 Sum_probs=71.5
Q ss_pred CcCCCCCCHHHHHHHHH-CCCCCCCHHHHhHHHHHhCCCCCCHHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCC
Q psy17636 59 SFGHFGFDEVLMKALRK-CEYTSPTPIQAQAVPAALSGRDIIEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTD 137 (222)
Q Consensus 59 ~f~~l~l~~~l~~~l~~-~g~~~pTpIQ~~~ip~il~g~dvi~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~ 137 (222)
++.++++++.+.+.|++ .||..|+|+|.++|+.+++|+|+ ++...|=
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~------------------lv~~pTG-------------- 69 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEV------------------FLVMPTG-------------- 69 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCE------------------EEECCTT--------------
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCE------------------EEEECCC--------------
Confidence 34568899999999998 59999999999999999887663 2332221
Q ss_pred CcEEEeCCCCCCCCCeeEEEEEcCCCchH-HHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCC
Q psy17636 138 PIKIVQGDIGEANTDITQVVINLPQTQKL-TWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCP 213 (222)
Q Consensus 138 p~~i~v~~~~~~~~~i~q~~~~~~~~~K~-~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~ 213 (222)
.-|. .+++-.+ ...+.+||.+.++.- .. ..|...|+++..+||+++..
T Consensus 70 -------------------------sGKTl~~~lpal---~~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~ 121 (591)
T 2v1x_A 70 -------------------------GGKSLCYQLPAL---CSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKE 121 (591)
T ss_dssp -------------------------SCTTHHHHHHHH---TSSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHH
T ss_pred -------------------------ChHHHHHHHHHH---HcCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHH
Confidence 1121 1121222 235689999998854 55 77777899999999999887
Q ss_pred hHHHh
Q psy17636 214 KSPSR 218 (222)
Q Consensus 214 ~R~~~ 218 (222)
++...
T Consensus 122 ~~~~~ 126 (591)
T 2v1x_A 122 HVKWV 126 (591)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 133
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=36.40 E-value=20 Score=31.78 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=27.8
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~ 211 (222)
+..+++++|++-.. .. ..|+..|+++..|.|++.
T Consensus 540 ~~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~~ 576 (588)
T 3ics_A 540 VDKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFK 576 (588)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchHH
Confidence 44689999987644 66 899999999999999875
No 134
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=36.03 E-value=38 Score=25.89 Aligned_cols=33 Identities=12% Similarity=-0.103 Sum_probs=28.8
Q ss_pred CeEEEEecccHHHH-HHhHHCCceEEEecCCCCC
Q psy17636 180 GSLLIFVTKKCFEL-VNLIAKNYWLIQAVGILMC 212 (222)
Q Consensus 180 ~~~IVF~nt~~~~l-~~L~~~g~~~~~lHg~~~q 212 (222)
.++-||+|...+.+ ......+..+.-|||+-+.
T Consensus 55 ~~VgVfvn~~~~~i~~~~~~~~ld~vQLHG~e~~ 88 (205)
T 1nsj_A 55 FRVGVFVNEEPEKILDVASYVQLNAVQLHGEEPI 88 (205)
T ss_dssp EEEEEESSCCHHHHHHHHHHHTCSEEEECSCCCH
T ss_pred CEEEEEeCCCHHHHHHHHHhhCCCEEEECCCCCH
Confidence 58999999988888 8888889999999998755
No 135
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=35.61 E-value=30 Score=27.69 Aligned_cols=34 Identities=12% Similarity=-0.033 Sum_probs=26.1
Q ss_pred CCCeEEEEecccH--HHH-HHhHHCCce-EEEecCCCC
Q psy17636 178 STGSLLIFVTKKC--FEL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~--~~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
...++|+||.+-. ... ..|...|++ +..+.|++.
T Consensus 239 ~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 239 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp TTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 3468999998743 355 788899995 889998874
No 136
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=35.61 E-value=15 Score=33.19 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.2
Q ss_pred CCCCHHHHhHHHHHhCCCCCC
Q psy17636 79 TSPTPIQAQAVPAALSGRDII 99 (222)
Q Consensus 79 ~~pTpIQ~~~ip~il~g~dvi 99 (222)
-.|+|.|.++++.+++|+|++
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~l 26 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNII 26 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEE
T ss_pred CCccHHHHHHHHHHHhCCCEE
Confidence 479999999999999999988
No 137
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=35.50 E-value=77 Score=30.73 Aligned_cols=41 Identities=2% Similarity=-0.083 Sum_probs=31.5
Q ss_pred CCCeEEEEecccHH--HH-HHhHH---CCceEEEecCCCCCChHHHh
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIA---KNYWLIQAVGILMCPKSPSR 218 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~---~g~~~~~lHg~~~q~~R~~~ 218 (222)
...++||-+.|+.- ++ ..++. .|+++..+||+++..+|...
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~ 166 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKF 166 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHH
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHH
Confidence 34689999999954 66 66665 67899999999998766443
No 138
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=35.18 E-value=40 Score=26.61 Aligned_cols=34 Identities=6% Similarity=-0.143 Sum_probs=25.8
Q ss_pred CCCeEEEEecccH--H-HH-HHhHHCCc-eEEEecCCCC
Q psy17636 178 STGSLLIFVTKKC--F-EL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~--~-~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
+..+++|+|++-. . .. ..|+..|+ ++..|.|++.
T Consensus 78 ~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 116 (285)
T 1uar_A 78 NDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQ 116 (285)
T ss_dssp TTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 3468999997643 2 66 88999999 5889998763
No 139
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=35.10 E-value=34 Score=25.37 Aligned_cols=32 Identities=13% Similarity=-0.110 Sum_probs=26.4
Q ss_pred CCCCeEEEEecccHH----HH-HHhHHCCceEEEecC
Q psy17636 177 LSTGSLLIFVTKKCF----EL-VNLIAKNYWLIQAVG 208 (222)
Q Consensus 177 ~~~~~~IVF~nt~~~----~l-~~L~~~g~~~~~lHg 208 (222)
.+...+|||+|+-.+ ++ ..+++.|.++.++.+
T Consensus 76 ~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 76 HAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp CTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 345699999987532 77 899999999999998
No 140
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=34.88 E-value=18 Score=18.44 Aligned_cols=14 Identities=29% Similarity=0.403 Sum_probs=11.4
Q ss_pred CCCCCCCHHHHhHH
Q psy17636 76 CEYTSPTPIQAQAV 89 (222)
Q Consensus 76 ~g~~~pTpIQ~~~i 89 (222)
.||+..||.|-+|.
T Consensus 13 ~GyE~vtp~qykam 26 (28)
T 1jmt_B 13 PGFEHITPMQYKAM 26 (28)
T ss_dssp TTCTTSCHHHHHHT
T ss_pred CCccccCHHHHhhc
Confidence 39999999997763
No 141
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=34.54 E-value=23 Score=28.85 Aligned_cols=43 Identities=7% Similarity=-0.127 Sum_probs=29.4
Q ss_pred HHHHHHhhCCCCeEEEEecccHH--HH-HHhHH-CCce-EEEecCCCC
Q psy17636 169 LTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIA-KNYW-LIQAVGILM 211 (222)
Q Consensus 169 L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~-~g~~-~~~lHg~~~ 211 (222)
|...+.......++|+||++-.. .. ..|.. .|++ +..+.|++.
T Consensus 249 l~~~~~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~ 296 (318)
T 3hzu_A 249 LERLYDFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWT 296 (318)
T ss_dssp HHHHTTTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHH
T ss_pred HHHHhcCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 43444333345689999987655 55 77876 8995 888988864
No 142
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=34.16 E-value=51 Score=27.88 Aligned_cols=34 Identities=3% Similarity=-0.053 Sum_probs=26.4
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCc-eEEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
+..++||+|.+-.. .. ..|...|+ ++..|.|+++
T Consensus 202 ~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~ 239 (423)
T 2wlr_A 202 HDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQ 239 (423)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHH
T ss_pred CCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHH
Confidence 34689999987544 66 88888999 5889999864
No 143
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=34.14 E-value=11 Score=30.38 Aligned_cols=41 Identities=17% Similarity=-0.022 Sum_probs=27.2
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhc
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLS 220 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~ 220 (222)
.+-+|||.|+..+ .| ..|+..|+.|.. |.+++.++=.+.|.
T Consensus 43 rG~~LIinn~~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~ 86 (272)
T 3h11_A 43 LGICLIIDCIGNETELLRDTFTSLGYEVQK-FLHLSMHGISQILG 86 (272)
T ss_dssp SEEEEEEESSCCCCSHHHHHHHHHTEEEEE-EESCBHHHHHHHHH
T ss_pred ceEEEEECCchHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHH
Confidence 4678888887655 77 888888887554 45666665555443
No 144
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=32.82 E-value=51 Score=25.13 Aligned_cols=41 Identities=10% Similarity=-0.169 Sum_probs=30.3
Q ss_pred CCeEEEEecccHH------HH-HHhHHCCceEEEecCCCCCChHHHhh
Q psy17636 179 TGSLLIFVTKKCF------EL-VNLIAKNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 179 ~~~~IVF~nt~~~------~l-~~L~~~g~~~~~lHg~~~q~~R~~~L 219 (222)
..++||.|.|+.- .+ ..+...|+++..++|+.+...+...+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 149 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 149 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHh
Confidence 3579999999843 34 55566799999999999877665543
No 145
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=32.47 E-value=21 Score=24.25 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=22.6
Q ss_pred eEEEEecccHH--HH-HHhHHC------C-ceEEEecCCCC
Q psy17636 181 SLLIFVTKKCF--EL-VNLIAK------N-YWLIQAVGILM 211 (222)
Q Consensus 181 ~~IVF~nt~~~--~l-~~L~~~------g-~~~~~lHg~~~ 211 (222)
+++|+|.+-.. .. ..|... | .++..|.|++.
T Consensus 74 ~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 74 PIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 89999986533 45 777766 3 47888999875
No 146
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=32.46 E-value=35 Score=31.75 Aligned_cols=41 Identities=7% Similarity=-0.043 Sum_probs=31.2
Q ss_pred CCeEEEEecccHH------HH-HHhHHCCceEEEecCCCCCChHHHhh
Q psy17636 179 TGSLLIFVTKKCF------EL-VNLIAKNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 179 ~~~~IVF~nt~~~------~l-~~L~~~g~~~~~lHg~~~q~~R~~~L 219 (222)
..+++|.+.|+.- .+ ..+...|+++..+||+++..+|...+
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~ 464 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIK 464 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHH
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHH
Confidence 4689999998842 34 45555689999999999988876554
No 147
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=32.31 E-value=58 Score=21.88 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=24.8
Q ss_pred HHHhhCCCCeEEEEec-----ccHH---HH-HHhHHCCceEEEe
Q psy17636 172 NLVEFLSTGSLLIFVT-----KKCF---EL-VNLIAKNYWLIQA 206 (222)
Q Consensus 172 ~l~~~~~~~~~IVF~n-----t~~~---~l-~~L~~~g~~~~~l 206 (222)
.+.+..+..+++||.. +.|- .. ..|...|++...+
T Consensus 8 ~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~ 51 (111)
T 3zyw_A 8 RLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSF 51 (111)
T ss_dssp HHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEE
Confidence 3444455679999997 5433 77 8999999876655
No 148
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=32.09 E-value=59 Score=27.82 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=28.6
Q ss_pred CCeEEEEecccHH------HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636 179 TGSLLIFVTKKCF------EL-VNLIAKNYWLIQAVGILMCPKSPS 217 (222)
Q Consensus 179 ~~~~IVF~nt~~~------~l-~~L~~~g~~~~~lHg~~~q~~R~~ 217 (222)
.+++||.|.|+.- .+ ..+...|+++..+||+.+...+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 97 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQ 97 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHH
Confidence 5689999998743 34 444455999999999997665543
No 149
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=31.92 E-value=66 Score=22.85 Aligned_cols=34 Identities=6% Similarity=-0.068 Sum_probs=22.6
Q ss_pred CCCeEEEEec-cc--HHHH-HHh--------HHCCc-eEEEecCCCC
Q psy17636 178 STGSLLIFVT-KK--CFEL-VNL--------IAKNY-WLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~n-t~--~~~l-~~L--------~~~g~-~~~~lHg~~~ 211 (222)
+..++||+|+ +- .... ..| +..|+ ++..|.|++.
T Consensus 84 ~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~ 130 (152)
T 1t3k_A 84 DKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFN 130 (152)
T ss_dssp SCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTH
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHH
Confidence 3468899998 53 2222 333 45798 7889999985
No 150
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=31.83 E-value=1.1e+02 Score=20.26 Aligned_cols=42 Identities=17% Similarity=0.080 Sum_probs=29.1
Q ss_pred HHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCC
Q psy17636 171 HNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMC 212 (222)
Q Consensus 171 ~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q 212 (222)
..|.+..+..+++|..|.+.- ++ ....+.|+++..+-.+.+.
T Consensus 43 kklaeeknfekiliisndkqllkemlelisklgykvflllqdqde 87 (134)
T 2lci_A 43 KKLAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDE 87 (134)
T ss_dssp HHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCH
T ss_pred HHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCch
Confidence 445555566788888887754 55 7777778888877655443
No 151
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=31.75 E-value=45 Score=24.85 Aligned_cols=56 Identities=9% Similarity=0.059 Sum_probs=28.2
Q ss_pred CchHHH-HHHHHHhh---CCCCeEEEEecccHH--HH-HHh----HHCCceEEEecCCCCCChHHHh
Q psy17636 163 TQKLTW-LTHNLVEF---LSTGSLLIFVTKKCF--EL-VNL----IAKNYWLIQAVGILMCPKSPSR 218 (222)
Q Consensus 163 ~~K~~~-L~~~l~~~---~~~~~~IVF~nt~~~--~l-~~L----~~~g~~~~~lHg~~~q~~R~~~ 218 (222)
.-|... ++-.+... ....++||.|.++.- ++ ..+ ...|+++..++|+.+..++...
T Consensus 62 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 128 (224)
T 1qde_A 62 TGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG 128 (224)
T ss_dssp SSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------
T ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc
Confidence 567654 33333322 233589999998743 33 333 3458899999999876655443
No 152
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=31.22 E-value=70 Score=27.89 Aligned_cols=39 Identities=8% Similarity=-0.063 Sum_probs=32.2
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPS 217 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~ 217 (222)
.+.+||.+.++.- .. ..|...|+++..+||+.+..++..
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~ 106 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLE 106 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 4789999998865 66 888889999999999998776544
No 153
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=31.13 E-value=56 Score=25.60 Aligned_cols=34 Identities=6% Similarity=-0.110 Sum_probs=25.6
Q ss_pred CCCeEEEEecccHH--HH-HHhHH-CCce-EEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIA-KNYW-LIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~-~g~~-~~~lHg~~~ 211 (222)
+..++|++|.+-.. .. ..|.. .|+. +..|.|++.
T Consensus 225 ~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 263 (277)
T 3aay_A 225 NSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWT 263 (277)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHH
Confidence 34689999987544 55 77875 8995 889999864
No 154
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=31.06 E-value=49 Score=26.93 Aligned_cols=41 Identities=17% Similarity=0.107 Sum_probs=28.7
Q ss_pred CCeEEEEecccHH--HH-HHhHHC-----CceEEEecCCCCCChHHHhh
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAK-----NYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~-----g~~~~~lHg~~~q~~R~~~L 219 (222)
..++||.|+++.- ++ ..+... ++++..++|+.+...+...+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 124 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 124 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHH
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHH
Confidence 3489999999843 44 444432 89999999998876655443
No 155
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=31.04 E-value=13 Score=17.00 Aligned_cols=8 Identities=13% Similarity=0.646 Sum_probs=6.1
Q ss_pred EEEEeccc
Q psy17636 182 LLIFVTKK 189 (222)
Q Consensus 182 ~IVF~nt~ 189 (222)
-|||||.+
T Consensus 7 piiycnrr 14 (21)
T 8tfv_A 7 PIIYCNRR 14 (26)
T ss_dssp CCEEEEGG
T ss_pred cEEEEcCc
Confidence 47899876
No 156
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=30.60 E-value=74 Score=21.11 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=25.1
Q ss_pred HHHHhhCCCCeEEEEecc------c--HHHH-HHhHHCCceEEEe
Q psy17636 171 HNLVEFLSTGSLLIFVTK------K--CFEL-VNLIAKNYWLIQA 206 (222)
Q Consensus 171 ~~l~~~~~~~~~IVF~nt------~--~~~l-~~L~~~g~~~~~l 206 (222)
..+.+.....+++||..+ + |... ..|...|++...+
T Consensus 9 ~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~ 53 (109)
T 3ipz_A 9 DTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDV 53 (109)
T ss_dssp HHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEE
Confidence 344445556799999975 3 2277 8999999876655
No 157
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=30.49 E-value=44 Score=29.38 Aligned_cols=34 Identities=9% Similarity=-0.101 Sum_probs=27.2
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCceEEEecC-CCCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVG-ILMC 212 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg-~~~q 212 (222)
..+++|+|.+-.. .. ..|+..|+++..|.| ++..
T Consensus 322 ~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~~~ 359 (539)
T 1yt8_A 322 GARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEAD 359 (539)
T ss_dssp TCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGGG
T ss_pred CCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCChHH
Confidence 4689999987533 56 889999999999999 8743
No 158
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=29.90 E-value=70 Score=25.40 Aligned_cols=34 Identities=3% Similarity=-0.100 Sum_probs=25.8
Q ss_pred CCCeEEEEecc--c---HHHH-HHhHHCCc-eEEEecCCCC
Q psy17636 178 STGSLLIFVTK--K---CFEL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt--~---~~~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
+..++||+|.+ - ...+ ..|+..|+ ++..|.|++.
T Consensus 91 ~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~ 131 (296)
T 1rhs_A 91 NDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFR 131 (296)
T ss_dssp TTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHH
Confidence 34689999987 3 2267 88999999 5889998763
No 159
>2iu4_A DHA-DHAQ, dihydroxyacetone kinase; transferase, CO-activa kinase; HET: HIQ; 1.96A {Lactococcus lactis} PDB: 2iu6_A
Probab=29.81 E-value=2.2e+02 Score=23.54 Aligned_cols=99 Identities=10% Similarity=0.073 Sum_probs=50.6
Q ss_pred HHHHHHHHhhCCCCCeEE---EEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHHHh
Q psy17636 100 EPQVRSICDHVRPNRQTL---LFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNLVE 175 (222)
Q Consensus 100 ~~~l~~Il~~~~~~~Q~~---lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~ 175 (222)
.+++..+.+....+..++ |-++|+|.. +. .|--..-.+.++---.--+.++.. ...+ .+=...|+..|..
T Consensus 168 L~ev~~~a~~~~~~~~SiGvaL~~ctvP~~-~p---~F~l~~~emE~G~GIHGEpG~~r~--~~~~a~el~~~m~~~ll~ 241 (336)
T 2iu4_A 168 IDEIEQLALSLSPEIYTLGVALAPVHFPHQ-KT---SFVLAEDEVSFGIGIXGEPGYRVE--KFEGSERIAIELVNKLKA 241 (336)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEECCEETTT-EE---SSCCCTTEEEESCCCCCCCCSEEE--ECCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhceEEEEECCCccCCCC-CC---CCccCCCceEecccccCCCCcccc--CCCCHHHHHHHHHHHHHh
Confidence 677777777766666666 345677763 11 121123333443221111223322 1222 2223344455533
Q ss_pred hC-----CCCeEEEEec----ccH-H------HH-HHhHHCCceEE
Q psy17636 176 FL-----STGSLLIFVT----KKC-F------EL-VNLIAKNYWLI 204 (222)
Q Consensus 176 ~~-----~~~~~IVF~n----t~~-~------~l-~~L~~~g~~~~ 204 (222)
.. +..++++++| |.. + .+ +.|...|+++.
T Consensus 242 ~l~~~~~~gd~v~vlVNgLG~t~~~El~i~~~~v~~~L~~~gi~v~ 287 (336)
T 2iu4_A 242 EINWQKKANKNYILLVNGLGSTTLMELYSFQYDVMRLLELEGLSVK 287 (336)
T ss_dssp HHCGGGCSCCEEEEEEEECBSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hCccccCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHHCCCeEE
Confidence 21 3458999998 442 2 67 88888898764
No 160
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=29.76 E-value=17 Score=31.99 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=27.7
Q ss_pred CCCCCCCHHHHhHHH----HHhCCCCCC-------HHHHHHHHhhCCCCCeEEEEccccch
Q psy17636 76 CEYTSPTPIQAQAVP----AALSGRDII-------EPQVRSICDHVRPNRQTLLFSATFKK 125 (222)
Q Consensus 76 ~g~~~pTpIQ~~~ip----~il~g~dvi-------~~~l~~Il~~~~~~~Q~~lfSAT~~~ 125 (222)
.|| .|+|+|.+++. .+..|+|++ ..-+--++..+....+++..++|..-
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l 63 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQ 63 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHH
Confidence 478 89999999865 456899988 22222222222234678888888753
No 161
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=29.49 E-value=76 Score=24.07 Aligned_cols=30 Identities=3% Similarity=-0.210 Sum_probs=23.7
Q ss_pred CCeEEEEecccH-H--HH-HHhHHCCce-EEEecCC
Q psy17636 179 TGSLLIFVTKKC-F--EL-VNLIAKNYW-LIQAVGI 209 (222)
Q Consensus 179 ~~~~IVF~nt~~-~--~l-~~L~~~g~~-~~~lHg~ 209 (222)
..+++|+|++-. . .+ ..|+ .|+. +..|.|+
T Consensus 61 ~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 61 RSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp CSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred CCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 468999997643 3 67 8888 9995 8889988
No 162
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=29.47 E-value=56 Score=27.62 Aligned_cols=34 Identities=9% Similarity=-0.052 Sum_probs=26.3
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCc-eEEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
+..++|+||.+-.. .. ..|...|+ ++..+.|++.
T Consensus 357 ~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~ 394 (423)
T 2wlr_A 357 PEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWY 394 (423)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHH
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHH
Confidence 34689999987644 55 78899999 5888988764
No 163
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=28.57 E-value=1.5e+02 Score=22.90 Aligned_cols=71 Identities=18% Similarity=0.122 Sum_probs=49.4
Q ss_pred HHHHHCCCC-CCCHHHHhHHHHHhCCCCCC--------------------------------------------------
Q psy17636 71 KALRKCEYT-SPTPIQAQAVPAALSGRDII-------------------------------------------------- 99 (222)
Q Consensus 71 ~~l~~~g~~-~pTpIQ~~~ip~il~g~dvi-------------------------------------------------- 99 (222)
+.|...||. ..|+.|+..+--++.+-|.=
T Consensus 28 ~~~~~~~~~~~Lt~~Qe~~vk~am~~LdP~~ttWiDIEG~p~DPVElAiyQP~sg~YIHcyR~P~D~K~FK~~SKySHGi 107 (243)
T 3q7c_A 28 KSLQSAGFTAGLTYSQLMTLKDAMLQLDPNAKTWMDIEGRPEDPVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGI 107 (243)
T ss_dssp ------CCCSSSCHHHHHHHHHHHTTSCTTSCCEEEEESCTTSCSEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTTCB
T ss_pred hhhhhcccccCCCHHHHHHHHHHHHhcCCCCCeEEecCCCCCCCeEEEEeccCCCcEEEEecCCcchhhhcccCccccce
Confidence 446677865 56899999998888775543
Q ss_pred ---------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcC-CCcEEEeC
Q psy17636 100 ---------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLT-DPIKIVQG 144 (222)
Q Consensus 100 ---------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~-~p~~i~v~ 144 (222)
-..+..|++.+| |-+.++|-=+++++++....-+ +-..|+|.
T Consensus 108 llkDl~~aqPGL~S~vi~~LP---~nMVlT~QGsDDIrkLld~hGRrDiKlIDV~ 159 (243)
T 3q7c_A 108 DVTDLFATQPGLTSAVIDALP---RNMVITCQGSDDIRKLLESQGRKDIKLIDIA 159 (243)
T ss_dssp CGGGGTTBCTTHHHHHHHHSC---TTCEEEESSHHHHHHHHHHTTCTTSEEEECC
T ss_pred ehhhhhhcCCchHHHHHHhCC---cCcEEEeeChHHHHHHHHhcCCccceEEEee
Confidence 346777888887 6688888888999999888776 45555554
No 164
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=28.15 E-value=38 Score=27.10 Aligned_cols=23 Identities=0% Similarity=-0.153 Sum_probs=10.1
Q ss_pred HHhHHCCceEEEecCCCCCChHHH
Q psy17636 194 VNLIAKNYWLIQAVGILMCPKSPS 217 (222)
Q Consensus 194 ~~L~~~g~~~~~lHg~~~q~~R~~ 217 (222)
..|+..|+.|. .+-+++.++=.+
T Consensus 56 ~~f~~LGF~V~-~~~dlt~~em~~ 78 (271)
T 3h11_B 56 TTFEELHFEIK-PHDDCTVEQIYE 78 (271)
T ss_dssp HHHHHTTCEEE-EEESCCHHHHHH
T ss_pred HHHHHCCCEEE-EEeCCCHHHHHH
Confidence 45555555532 233444444333
No 165
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=27.81 E-value=82 Score=25.20 Aligned_cols=34 Identities=12% Similarity=0.015 Sum_probs=25.2
Q ss_pred CCCeEEEEecc-c----HHHH-HHhHHCCce-EEEecCCCC
Q psy17636 178 STGSLLIFVTK-K----CFEL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt-~----~~~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
+..+++|+|.+ . +..+ ..|+..|++ +..|.|++.
T Consensus 106 ~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~ 146 (302)
T 3olh_A 106 AATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLR 146 (302)
T ss_dssp SSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHH
Confidence 34689999964 1 3377 889999995 888888753
No 166
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=27.31 E-value=71 Score=26.82 Aligned_cols=108 Identities=8% Similarity=0.031 Sum_probs=61.1
Q ss_pred HHHHHHHHhhCC-CCCeEEEEccccchHHHHHHHHh---cC-CCcEEEeCCCC-CCCCCeeEEEE----EcCCCchHHHH
Q psy17636 100 EPQVRSICDHVR-PNRQTLLFSATFKKRIEKLARDV---LT-DPIKIVQGDIG-EANTDITQVVI----NLPQTQKLTWL 169 (222)
Q Consensus 100 ~~~l~~Il~~~~-~~~Q~~lfSAT~~~~v~~l~~~~---l~-~p~~i~v~~~~-~~~~~i~q~~~----~~~~~~K~~~L 169 (222)
.+.+..+++.+. ....+.++||....-++.++... .. .+..|.-.... .....+.-.+. .+....|...+
T Consensus 223 ~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia~~lg~~y~ip~~~Vig~~l~~~~dG~~tg~~~~~~p~~~~~gK~~~i 302 (385)
T 4gxt_A 223 LDEMVDLYRSLEENGIDCYIVSASFIDIVRAFATDTNNNYKMKEEKVLGLRLMKDDEGKILPKFDKDFPISIREGKVQTI 302 (385)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHCTTSSCCCCGGGEEEECEEECTTCCEEEEECTTSCCCSTHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCcccCCCcceEEEeEEEEecCCceeeeecCccceeCCCchHHHH
Confidence 566777777764 46899999999998888888764 11 22222111110 11122322221 23445688777
Q ss_pred HHHHHhhCCCCeEEEEecccHH-HH-HHhHHCCceEEEecC
Q psy17636 170 THNLVEFLSTGSLLIFVTKKCF-EL-VNLIAKNYWLIQAVG 208 (222)
Q Consensus 170 ~~~l~~~~~~~~~IVF~nt~~~-~l-~~L~~~g~~~~~lHg 208 (222)
.+++.......+++.|-++..+ .+ +.....++. ..+|+
T Consensus 303 ~~~~~~~~~~~~i~a~GDs~~D~~ML~~~~~~~~~-liinr 342 (385)
T 4gxt_A 303 NKLIKNDRNYGPIMVGGDSDGDFAMLKEFDHTDLS-LIIHR 342 (385)
T ss_dssp HHHTCCTTEECCSEEEECSGGGHHHHHHCTTCSEE-EEECC
T ss_pred HHHHHhcCCCCcEEEEECCHhHHHHHhcCccCceE-EEEcC
Confidence 6655444444678888888777 55 544444433 34454
No 167
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=26.42 E-value=1.7e+02 Score=21.69 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=24.7
Q ss_pred CCeEEEEecccHH--HH-HHhHH---CCceEEEecCCCCCChHHHhh
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIA---KNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~---~g~~~~~lHg~~~q~~R~~~L 219 (222)
..++||.|.|+.- ++ ..+.. .|+++..++|+.+...+...+
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI 140 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh
Confidence 4578999999854 44 44444 588999999998877655443
No 168
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=25.81 E-value=58 Score=24.26 Aligned_cols=20 Identities=15% Similarity=0.011 Sum_probs=8.8
Q ss_pred HHhHHCCceEEEecCCCCCCh
Q psy17636 194 VNLIAKNYWLIQAVGILMCPK 214 (222)
Q Consensus 194 ~~L~~~g~~~~~lHg~~~q~~ 214 (222)
..|+..|+.|. ++-+++..+
T Consensus 72 ~~f~~LgF~V~-~~~dlt~~e 91 (178)
T 2h54_A 72 MLLQNLGYSVD-VKKNLTASD 91 (178)
T ss_dssp HHHHHTTCEEE-EEESCCHHH
T ss_pred HHHHHCCCEEE-EecCCCHHH
Confidence 45555555543 233444433
No 169
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=25.14 E-value=88 Score=26.77 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=24.0
Q ss_pred CCeEEEEecccHH------HH-HHhHHCCceEEEecCCCCCChHH
Q psy17636 179 TGSLLIFVTKKCF------EL-VNLIAKNYWLIQAVGILMCPKSP 216 (222)
Q Consensus 179 ~~~~IVF~nt~~~------~l-~~L~~~g~~~~~lHg~~~q~~R~ 216 (222)
.+++||.|.|+.- .+ ..+...|+++..+||+.+...+.
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 99 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSV 99 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhH
Confidence 4689999998743 33 44444599999999999766543
No 170
>3dxe_B Amyloid beta A4 protein; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxc_B 3dxd_B 2roz_A
Probab=24.81 E-value=17 Score=19.29 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=13.4
Q ss_pred HHHHHHHHHCCCCCCCH
Q psy17636 67 EVLMKALRKCEYTSPTP 83 (222)
Q Consensus 67 ~~l~~~l~~~g~~~pTp 83 (222)
+.-+..++..||+.||-
T Consensus 11 Erh~~~mQ~~GYENPTY 27 (35)
T 3dxe_B 11 ERHLSKMQQNGYENPTY 27 (35)
T ss_dssp HHHHHHHHHTCEECHHH
T ss_pred HHHHHHHHhccCcCcHH
Confidence 45677888899999884
No 171
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=24.73 E-value=37 Score=29.18 Aligned_cols=34 Identities=18% Similarity=0.057 Sum_probs=26.7
Q ss_pred CCCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCC
Q psy17636 178 STGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~ 211 (222)
+..+++|+|++-.. .. ..|+..|++ +..+.|++.
T Consensus 426 ~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~ 463 (474)
T 3tp9_A 426 RDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYE 463 (474)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHH
Confidence 34689999987654 55 888889995 899998864
No 172
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=24.53 E-value=95 Score=28.58 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=49.5
Q ss_pred HCCCCCCCHHHHhHHHHHhCCCCCCHHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCee
Q psy17636 75 KCEYTSPTPIQAQAVPAALSGRDIIEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDIT 154 (222)
Q Consensus 75 ~~g~~~pTpIQ~~~ip~il~g~dvi~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~ 154 (222)
-+|+..|||+|.++|+.++.|+| +++...|=.........
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~------------------~ll~~~TGsGKTl~~~~---------------------- 282 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKN------------------ALICAPTGSGKTFVSIL---------------------- 282 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCC------------------EEEECCTTSCHHHHHHH----------------------
T ss_pred hcCCCCCCHHHHHHHHHHHhCCC------------------EEEEeCCCChHHHHHHH----------------------
Confidence 45899999999999999887754 35555554443222111
Q ss_pred EEEEEcCCCchHHHHHHHHHhhC--CCCeEEEEecccHH--H----H-HHhHHCCceEEEecCCCCCChHHH
Q psy17636 155 QVVINLPQTQKLTWLTHNLVEFL--STGSLLIFVTKKCF--E----L-VNLIAKNYWLIQAVGILMCPKSPS 217 (222)
Q Consensus 155 q~~~~~~~~~K~~~L~~~l~~~~--~~~~~IVF~nt~~~--~----l-~~L~~~g~~~~~lHg~~~q~~R~~ 217 (222)
.++..+.... ..+++||.|+++.- + + ..+...|+++..+||+.+...+..
T Consensus 283 -------------~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 341 (797)
T 4a2q_A 283 -------------ICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVE 341 (797)
T ss_dssp -------------HHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHH
T ss_pred -------------HHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHH
Confidence 1112222211 15689999998843 3 3 444445999999999997766543
No 173
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=24.33 E-value=46 Score=26.76 Aligned_cols=33 Identities=6% Similarity=-0.110 Sum_probs=25.2
Q ss_pred CCeEEEEecccHH--HH-HHhHHCCc-eEEEecCCCC
Q psy17636 179 TGSLLIFVTKKCF--EL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
..++|++|.+-.+ .. ..|...|+ ++..+-|++.
T Consensus 254 ~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~ 290 (302)
T 3olh_A 254 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWV 290 (302)
T ss_dssp TSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHH
T ss_pred CCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 4689999987433 55 77889999 6788888764
No 174
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=23.42 E-value=76 Score=25.71 Aligned_cols=40 Identities=5% Similarity=0.058 Sum_probs=28.1
Q ss_pred CCeEEEEecccHH--HH-----HHhHHCCceEEEecCCCCCChHHHh
Q psy17636 179 TGSLLIFVTKKCF--EL-----VNLIAKNYWLIQAVGILMCPKSPSR 218 (222)
Q Consensus 179 ~~~~IVF~nt~~~--~l-----~~L~~~g~~~~~lHg~~~q~~R~~~ 218 (222)
..++||.|.++.- ++ ..+...|+++..+||+.+..++...
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 135 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG 135 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhh
Confidence 4589999998743 33 3334468999999999886655443
No 175
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1
Probab=23.23 E-value=47 Score=23.36 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=23.7
Q ss_pred CCCeEEEEeccc--H-------H---HH-HHhHHCCceEEEecCCCCC
Q psy17636 178 STGSLLIFVTKK--C-------F---EL-VNLIAKNYWLIQAVGILMC 212 (222)
Q Consensus 178 ~~~~~IVF~nt~--~-------~---~l-~~L~~~g~~~~~lHg~~~q 212 (222)
...+++|||.+- . . .+ ..|...|+++..|.|++..
T Consensus 91 ~~~~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~v~~L~GG~~~ 138 (154)
T 1hzm_A 91 GTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEGGFSK 138 (154)
T ss_dssp TSSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCCCEECCCCHHH
T ss_pred CCCeEEEEeCCCCccccccccchHHHHHHHHHHHCCCceEEEcChHHH
Confidence 446899999642 2 2 24 5555669998899999753
No 176
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=23.15 E-value=58 Score=28.57 Aligned_cols=41 Identities=7% Similarity=-0.090 Sum_probs=28.9
Q ss_pred HHHHhhCCCCeEEEEecccHH--HH-HHhHHCCc-eEEEecCCCC
Q psy17636 171 HNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNY-WLIQAVGILM 211 (222)
Q Consensus 171 ~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~-~~~~lHg~~~ 211 (222)
..+.+..+..+++++|.+-.. .. ..|+..|+ ++..|.|++.
T Consensus 422 ~~l~~l~~~~~ivv~C~sG~rs~~aa~~L~~~G~~~v~~l~GG~~ 466 (539)
T 1yt8_A 422 QALERLGTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTS 466 (539)
T ss_dssp HHHHHHCCCSEEEEECSSSHHHHHHHHHHHHHHCSCEEEETTHHH
T ss_pred HHHHhCCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEeCCcHH
Confidence 334444445689999987544 55 88888888 6888888753
No 177
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=22.85 E-value=59 Score=23.85 Aligned_cols=26 Identities=4% Similarity=-0.069 Sum_probs=13.4
Q ss_pred HH-HHhHHCCceEEEecCCCCCChHHHh
Q psy17636 192 EL-VNLIAKNYWLIQAVGILMCPKSPSR 218 (222)
Q Consensus 192 ~l-~~L~~~g~~~~~lHg~~~q~~R~~~ 218 (222)
.| ..|+..|+.| ..|-+++.++=.+.
T Consensus 59 ~L~~~f~~LgF~V-~~~~dlt~~em~~~ 85 (164)
T 1qtn_A 59 ALTTTFEELHFEI-KPHDDCTVEQIYEI 85 (164)
T ss_dssp HHHHHHHHTTCEE-EEEESCCHHHHHHH
T ss_pred HHHHHHHHCCCEE-EEecCCCHHHHHHH
Confidence 45 5666666665 33445554444333
No 178
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=22.31 E-value=50 Score=23.48 Aligned_cols=20 Identities=10% Similarity=-0.029 Sum_probs=15.5
Q ss_pred HH-HHhHHCCc---eEEEecCCCC
Q psy17636 192 EL-VNLIAKNY---WLIQAVGILM 211 (222)
Q Consensus 192 ~l-~~L~~~g~---~~~~lHg~~~ 211 (222)
++ ..|...|+ ++..|.|++.
T Consensus 88 ~~~~~L~~~G~~~~~v~~L~GG~~ 111 (152)
T 2j6p_A 88 RFALAQKKLGYVLPAVYVLRGGWE 111 (152)
T ss_dssp HHHHHHHHHTCCCSEEEEETTHHH
T ss_pred HHHHHHHHcCCCCCCEEEEcCcHH
Confidence 45 67888897 7888999874
No 179
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=22.26 E-value=41 Score=28.15 Aligned_cols=34 Identities=6% Similarity=-0.214 Sum_probs=26.0
Q ss_pred CCeEEEEecccH--HHH-HHhHHCCce-EEEecCCCCC
Q psy17636 179 TGSLLIFVTKKC--FEL-VNLIAKNYW-LIQAVGILMC 212 (222)
Q Consensus 179 ~~~~IVF~nt~~--~~l-~~L~~~g~~-~~~lHg~~~q 212 (222)
..++|+||++-. ... ..|...|++ +..+.|++..
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~ 283 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSE 283 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHHH
Confidence 468999998743 355 788899995 8889888753
No 180
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=22.14 E-value=98 Score=22.48 Aligned_cols=38 Identities=8% Similarity=-0.008 Sum_probs=25.9
Q ss_pred CeEEEEecccHH--HH-HHhH----HC-CceEEEecCCCCCChHHH
Q psy17636 180 GSLLIFVTKKCF--EL-VNLI----AK-NYWLIQAVGILMCPKSPS 217 (222)
Q Consensus 180 ~~~IVF~nt~~~--~l-~~L~----~~-g~~~~~lHg~~~q~~R~~ 217 (222)
.++||.|.++.- ++ ..+. .. +.++..++|+.+..+...
T Consensus 72 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 117 (206)
T 1vec_A 72 IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 117 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH
T ss_pred eeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH
Confidence 479999998853 33 3333 33 789999999987654433
No 181
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=21.69 E-value=74 Score=26.50 Aligned_cols=34 Identities=12% Similarity=-0.181 Sum_probs=26.2
Q ss_pred CCCeEEEEe-cc--cHH-HH-HHhHHCCceEEEecCCCC
Q psy17636 178 STGSLLIFV-TK--KCF-EL-VNLIAKNYWLIQAVGILM 211 (222)
Q Consensus 178 ~~~~~IVF~-nt--~~~-~l-~~L~~~g~~~~~lHg~~~ 211 (222)
+..+++||| .+ +.. .. ..|+..|+++..|.|++.
T Consensus 94 ~d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~ 132 (373)
T 1okg_A 94 GELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQ 132 (373)
T ss_dssp SSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHH
Confidence 346899999 43 343 66 888999999999999984
No 182
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=21.58 E-value=86 Score=23.41 Aligned_cols=27 Identities=7% Similarity=-0.039 Sum_probs=16.2
Q ss_pred HH-HHhHHCCceEEEecCCCCCChHHHhh
Q psy17636 192 EL-VNLIAKNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 192 ~l-~~L~~~g~~~~~lHg~~~q~~R~~~L 219 (222)
.| ..|+..|+.|..+ -+++.++=.+.|
T Consensus 73 ~L~~~F~~LGF~V~~~-~dlt~~em~~~l 100 (179)
T 3p45_A 73 NLTRRFSDLGFEVKCF-NDLKAEELLLKI 100 (179)
T ss_dssp HHHHHHHHTTCEEEEE-ESCCHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEE-eCCCHHHHHHHH
Confidence 56 7777777776443 466655554444
No 183
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=21.49 E-value=39 Score=20.98 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=12.0
Q ss_pred CCCeEEEEecccHH
Q psy17636 178 STGSLLIFVTKKCF 191 (222)
Q Consensus 178 ~~~~~IVF~nt~~~ 191 (222)
++++++.|||+++.
T Consensus 24 ~Dgkvf~FcssKc~ 37 (66)
T 1vq8_U 24 KDGATTHFCSSKCE 37 (66)
T ss_dssp TTSCEEEESCHHHH
T ss_pred eCCcEEEEECHHHH
Confidence 35799999999987
No 184
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=21.11 E-value=69 Score=26.01 Aligned_cols=41 Identities=15% Similarity=0.077 Sum_probs=29.3
Q ss_pred CeEEEEeccc-----------HH--HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636 180 GSLLIFVTKK-----------CF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL 221 (222)
Q Consensus 180 ~~~IVF~nt~-----------~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~ 221 (222)
+-+|||+|.. .+ .| ..|+..|+.|. .|-+++.++=.+.|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~ 115 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEA 115 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHH
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHH
Confidence 4589999863 22 77 88999999965 5567887776666543
No 185
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=20.80 E-value=1.7e+02 Score=27.56 Aligned_cols=139 Identities=12% Similarity=0.071 Sum_probs=88.1
Q ss_pred CCCCcccccccccCCCChhhhcCCHHHHHHHHHHcCCEEe-cCCCCCCCCCcCCCCCCHHHHHHHH--------HCCCCC
Q psy17636 10 HSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVS-GADPPYPVSSFGHFGFDEVLMKALR--------KCEYTS 80 (222)
Q Consensus 10 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~i~v~-g~~~p~~~~~f~~l~l~~~l~~~l~--------~~g~~~ 80 (222)
+.--.|.++.+.+.....++.++++++++....++...+. |. + |++.+.+++. .+|| .
T Consensus 17 r~~k~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~-------~-----ld~~l~ea~a~vrea~~r~lG~-~ 83 (844)
T 1tf5_A 17 RTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGA-------T-----TDDLLVEAFAVVREASRRVTGM-F 83 (844)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTC-------C-----HHHHHHHHHHHHHHHHHHHHSC-C
T ss_pred HHHHHHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCC-------C-----hHHHHHHHHHHHHHHHHHHcCC-C
Confidence 3334567777788888899999999999877776544332 32 1 2222333322 5799 9
Q ss_pred CCHHHHhHHHHHhCCCCCCHHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEc
Q psy17636 81 PTPIQAQAVPAALSGRDIIEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINL 160 (222)
Q Consensus 81 pTpIQ~~~ip~il~g~dvi~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~ 160 (222)
|||||..+||.+++|+ ++-+.|=+... ++
T Consensus 84 pt~VQ~~~ip~ll~G~--------------------Iaea~TGeGKT--la----------------------------- 112 (844)
T 1tf5_A 84 PFKVQLMGGVALHDGN--------------------IAEMKTGEGKT--LT----------------------------- 112 (844)
T ss_dssp CCHHHHHHHHHHHTTS--------------------EEECCTTSCHH--HH-----------------------------
T ss_pred CcHHHHHhhHHHhCCC--------------------EEEccCCcHHH--HH-----------------------------
Confidence 9999999999998764 23333322221 11
Q ss_pred CCCchHHHHHHHHHhhCCCCeEEEEecccH--H----HH-HHhHHCCceEEEecCCCCCChHHHhh
Q psy17636 161 PQTQKLTWLTHNLVEFLSTGSLLIFVTKKC--F----EL-VNLIAKNYWLIQAVGILMCPKSPSRL 219 (222)
Q Consensus 161 ~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~--~----~l-~~L~~~g~~~~~lHg~~~q~~R~~~L 219 (222)
+++-.+........++|-|.|+. . ++ ......|+++.++.|+++.++|..++
T Consensus 113 -------f~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~ 171 (844)
T 1tf5_A 113 -------STLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY 171 (844)
T ss_dssp -------HHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH
T ss_pred -------HHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc
Confidence 11111112223457899998873 2 45 55566799999999999987776543
No 186
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=20.77 E-value=64 Score=26.41 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=29.6
Q ss_pred CCeEEEEeccc------------HH--HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636 179 TGSLLIFVTKK------------CF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL 221 (222)
Q Consensus 179 ~~~~IVF~nt~------------~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~ 221 (222)
.+-+|||.|.. .+ .| ..|+..|+.| .+|-+++.++=.+.|..
T Consensus 61 rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~ 117 (316)
T 2fp3_A 61 RGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTI-FPYGNVNQDQFFKLLTM 117 (316)
T ss_dssp SEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEE-EEECSCCHHHHHHHHHH
T ss_pred CcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEE-EEccCCCHHHHHHHHHH
Confidence 46788888751 22 77 8888999986 45678887776666543
No 187
>3s5u_A Putative uncharacterized protein; crispr, crispr adaptation mechanism, NEW spacer aquisition, binding, DNA binding protein; 2.70A {Enterococcus faecalis}
Probab=20.51 E-value=2e+02 Score=22.12 Aligned_cols=46 Identities=20% Similarity=0.094 Sum_probs=31.7
Q ss_pred chHHHHHHHHHhhCCCCeEEEEeccc-----HH--HH-HHhHHCCceEEEecCCC
Q psy17636 164 QKLTWLTHNLVEFLSTGSLLIFVTKK-----CF--EL-VNLIAKNYWLIQAVGIL 210 (222)
Q Consensus 164 ~K~~~L~~~l~~~~~~~~~IVF~nt~-----~~--~l-~~L~~~g~~~~~lHg~~ 210 (222)
+|....++.... ....+++||||-+ .+ .+ +.....++++..+-...
T Consensus 147 e~i~~~lki~~e-l~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~i~vL~IE~~~ 200 (220)
T 3s5u_A 147 EKVMEITQVHRY-LSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRV 200 (220)
T ss_dssp HHHHHHHHHHHH-CTTCCEEEEESGGGGCCHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHHHHHHHH-hcCCCEEEEEChHHhCCHHHHHHHHHHHHHhCCeEEEEeccc
Confidence 344444454444 4567999999944 44 77 88888999998887663
Done!