RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17636
(222 letters)
>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional.
Length = 545
Score = 97.9 bits (244), Expect = 1e-23
Identities = 41/98 (41%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 3 DPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGIT-VSGADPPYPVSSFG 61
L PID +I EKNFY+ H +++ L+ +E E+R + IT ++G + P PV SF
Sbjct: 74 KRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFE 133
Query: 62 HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
+ F + ++K+L+ +T PTPIQ Q P ALSGRD+I
Sbjct: 134 YTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMI 171
Score = 64.8 bits (158), Expect = 3e-12
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTD-PIKIVQGDIG-EANTDITQVV 157
EPQ+R I +RP+RQTL++SAT+ K ++ LARD+ + P+ + G + A +I Q V
Sbjct: 295 EPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEV 354
Query: 158 INLPQTQKLTWLTHNLVEFL-----STGSLLIFV-TKK 189
+ + +K L L +LIFV TKK
Sbjct: 355 FVVEEHEKRG----KLKMLLQRIMRDGDKILIFVETKK 388
>gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase;
Provisional.
Length = 518
Score = 68.3 bits (167), Expect = 2e-13
Identities = 30/69 (43%), Positives = 38/69 (55%)
Query: 31 RLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVP 90
L+ +A+ LR K I V G P P+ SF G L+ L Y PTPIQ QA+P
Sbjct: 94 GLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIP 153
Query: 91 AALSGRDII 99
AALSGR ++
Sbjct: 154 AALSGRSLL 162
Score = 35.5 bits (82), Expect = 0.017
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQK 165
Q LLFSAT +EK A + D I I G+ N + Q+ I + QK
Sbjct: 302 QVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQK 352
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA
replication, recombination, and repair / Transcription /
Translation, ribosomal structure and biogenesis].
Length = 513
Score = 61.0 bits (148), Expect = 5e-11
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDP--IKIVQGDIGEANTDITQVV 157
+ I + P+RQTLLFSAT I +LAR L DP I++ + I Q
Sbjct: 192 IDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFY 251
Query: 158 INLP-QTQKLTWLTHNLVEFLSTGSLLIFV-TKK 189
+ + + +KL L L++ G +++FV TK+
Sbjct: 252 LEVESEEEKLELLLK-LLKDEDEGRVIVFVRTKR 284
Score = 58.3 bits (141), Expect = 5e-10
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 46 ITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
F G L++AL+ + PTPIQ A+P L+GRD++
Sbjct: 17 NVALSRGEEKTPPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVL 70
>gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases. A diverse family of proteins
involved in ATP-dependent RNA unwinding, needed in a
variety of cellular processes including splicing,
ribosome biogenesis and RNA degradation. The name
derives from the sequence of the Walker B motif (motif
II). This domain contains the ATP- binding region.
Length = 203
Score = 59.0 bits (144), Expect = 7e-11
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
E Q+R I + +RQTLLFSAT K + LAR L +P++I
Sbjct: 161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202
Score = 55.2 bits (134), Expect = 2e-09
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 60 FGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
F G L++ + + PTPIQA+A+P LSGRD+I
Sbjct: 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVI 40
>gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional.
Length = 460
Score = 53.3 bits (129), Expect = 2e-08
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 104 RSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQT 163
+I RQTLLFSAT+ + I +++ DP V+ + I Q +
Sbjct: 169 DAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDP-VEVKVESTHDLPAIEQRFYEVSPD 227
Query: 164 QKLTWLTHNLVEFLSTGSLLIFV-TKK-CFELVN 195
++L L L+ S ++F TKK C E+ +
Sbjct: 228 ERLPALQRLLLHHQPE-SCVVFCNTKKECQEVAD 260
Score = 41.7 bits (99), Expect = 1e-04
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 78 YTSPTPIQAQAVPAALSGRDII 99
YT TPIQAQ++PA L+G+D+I
Sbjct: 24 YTEMTPIQAQSLPAILAGKDVI 45
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 53.0 bits (128), Expect = 2e-08
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 60 FGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDI 98
F DE L++AL+ YT PT IQA+A+P AL GRD+
Sbjct: 3 FSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDV 41
Score = 40.7 bits (96), Expect = 4e-04
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 103 VRSICDHVRPNRQTLLFSATFK-KRIEKLARDVLTDPIKI 141
+ +I R +QTLLFSAT + ++ A +L DP+++
Sbjct: 168 IETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEV 207
>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.
Length = 456
Score = 44.8 bits (106), Expect = 2e-05
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 59 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
SF G +++A+ + Y PTPIQ QA+PA L GRD++
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLM 42
Score = 40.2 bits (94), Expect = 5e-04
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVV 157
+R + + RQ LLFSATF I+ LA +L +P++I A+ +TQ V
Sbjct: 170 IRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHV 224
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 43.6 bits (103), Expect = 2e-05
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQV 156
Q+ + + N Q LL SAT + IE L L DP+ I G I Q
Sbjct: 147 GDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGF--TPLEPIEQF 201
Score = 27.1 bits (60), Expect = 5.8
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 73 LRKCEYTSPTPIQAQAVPAALSG-RDII 99
+ K + P Q +A+ A LSG RD+I
Sbjct: 1 IEKFGFEPLRPYQKEAIEALLSGLRDVI 28
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 43.7 bits (103), Expect = 3e-05
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 101 PQVRSICDHVRP--NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVI 158
PQVR I RQTLLFSATF + LA+ TDP + A+ + Q V
Sbjct: 256 PQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVY 315
Query: 159 NLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK 189
+ + K L +NLV +++F +K
Sbjct: 316 AVAGSDKYK-LLYNLVTQNPWERVMVFANRK 345
Score = 31.8 bits (72), Expect = 0.30
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 52 DPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
+P + F F LM A+ + TPIQAQ + L+G D I
Sbjct: 81 EPQEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAI 128
>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional.
Length = 629
Score = 40.6 bits (95), Expect = 4e-04
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
++F G +++AL Y P+PIQA+ +P L+GRD++
Sbjct: 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVL 47
Score = 30.2 bits (68), Expect = 0.97
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI-VQGDIGEANTDITQVVINLP 161
V +I + QT LFSAT + I ++ R + +P ++ +Q + DI+Q +
Sbjct: 170 VETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVW 228
Query: 162 QTQKLTWLTHNLVEFLST---GSLLIFVTKK 189
+K LV FL + +IFV K
Sbjct: 229 GMRK----NEALVRFLEAEDFDAAIIFVRTK 255
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase. Members of this family
include the DEAD and DEAH box helicases. Helicases are
involved in unwinding nucleic acids. The DEAD box
helicases are involved in various aspects of RNA
metabolism, including nuclear transcription, pre mRNA
splicing, ribosome biogenesis, nucleocytoplasmic
transport, translation, RNA decay and organellar gene
expression.
Length = 169
Score = 36.5 bits (85), Expect = 0.004
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKL 130
+ I + P+RQ LL SAT + +E L
Sbjct: 139 GDDLEEILSRLPPDRQILLLSATLPRNLEDL 169
Score = 33.4 bits (77), Expect = 0.039
Identities = 13/18 (72%), Positives = 17/18 (94%)
Query: 82 TPIQAQAVPAALSGRDII 99
TPIQAQA+PA LSG+D++
Sbjct: 1 TPIQAQAIPAILSGKDVL 18
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional.
Length = 572
Score = 36.9 bits (85), Expect = 0.006
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 51 ADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDI 98
+D P +F F L+ L +T TPIQA +P AL G D+
Sbjct: 2 SDKPLTDLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDV 49
Score = 36.1 bits (83), Expect = 0.012
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 111 RPNRQTLLFSATFKKRIEKLARDVLTDPIKIV 142
R RQTLLFSAT R+ +LA + + +P K+V
Sbjct: 190 RGTRQTLLFSATLSHRVLELAYEHMNEPEKLV 221
>gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction
only].
Length = 814
Score = 34.5 bits (80), Expect = 0.034
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 65 FDEVLMKALRKCEYTSPTPIQAQAVPAALSGRD--IIEP 101
D + + ++ ++TS TP Q A+P SG + II P
Sbjct: 8 LDPRVREWFKR-KFTSLTPPQRYAIPEIHSGENVLIIAP 45
>gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional.
Length = 423
Score = 34.2 bits (79), Expect = 0.044
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 60 FGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDI 98
F F +++AL K + + TPIQA A+P L+GRD+
Sbjct: 10 FSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDV 48
Score = 29.2 bits (66), Expect = 1.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 114 RQTLLFSATFKKRIEKLARDVLTDPIKIV 142
R +LFSAT R+ +LA + + +P +
Sbjct: 191 RLNMLFSATLSYRVRELAFEHMNNPEYVE 219
>gnl|CDD|215408 PLN02763, PLN02763, hydrolase, hydrolyzing O-glycosyl compounds.
Length = 978
Score = 31.0 bits (70), Expect = 0.57
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 39 ELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKAL 73
+LR +S I + A YPV +FG F E L+ +L
Sbjct: 140 DLRKESIIRII-APASYPVITFGPFPSPEALLTSL 173
>gnl|CDD|215021 smart01092, CO_deh_flav_C, CO dehydrogenase flavoprotein C-terminal
domain.
Length = 102
Score = 28.4 bits (64), Expect = 1.0
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 80 SPTPIQAQAVPAALSGRDIIEPQVRSICDHVRPNRQTLLF----SATFKKR-IEKLARDV 134
+PTP +A AAL G+ + + + T L SA ++++ L R
Sbjct: 39 APTPKRAAEAEAALVGKPLTDEALARAAAAALAQDFTPLSDMRASAEYRRQLAANLLRRA 98
Query: 135 LTD 137
L +
Sbjct: 99 LLE 101
>gnl|CDD|236353 PRK08939, PRK08939, primosomal protein DnaI; Reviewed.
Length = 306
Score = 29.5 bits (67), Expect = 1.5
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 123 FKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVIN 159
F+KR EKL ++VL DP VQ + E ++TQ +I+
Sbjct: 17 FRKRYEKLKQEVLADP--DVQAFLQEHQEELTQEMID 51
>gnl|CDD|203613 pfam07319, DnaI_N, Primosomal protein DnaI N-terminus. This family
represents the N-terminus (approximately 120 residues)
of bacterial primosomal DnaI proteins, although one
family member appears to be of viral origin. DnaI is one
of the components of the Bacillus subtilis replication
restart primosome, and is required for the
DnaB75-dependent loading of the DnaC helicase.
Length = 93
Score = 27.5 bits (62), Expect = 2.3
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 123 FKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVIN 159
F+KR E+L ++VL DP VQ + E ++TQ +I+
Sbjct: 17 FQKRYEQLKKEVLKDP--DVQAFLQEHQEELTQDMID 51
>gnl|CDD|132552 TIGR03513, GldL_gliding, gliding motility-associated protein GldL.
This protein family, GldL, is named for the member from
Flavobacterium johnsoniae, which is required for a type
of rapid gliding motility found in certain members of
the Bacteriodetes. However, members are found also in
several members of the Bacteriodetes that appear not to
be motile [Cellular processes, Chemotaxis and motility].
Length = 202
Score = 27.6 bits (61), Expect = 4.9
Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 9/138 (6%)
Query: 6 PPID--HSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGAD-PPYPVSSFG- 61
P D VY E+ + P L K + A + S G
Sbjct: 51 KPADEYDWERVYPELASKNKRKEAAAYAEEPSAVGLLSQKLDAMLKEAKKDATLMQSLGN 110
Query: 62 ----HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG-RDIIEPQVRSICDHVRPNRQT 116
G + L Q ++ A + G I E Q++ H N +
Sbjct: 111 GINNFEGAAKTLAPMTDSYAQQKKYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEI 170
Query: 117 LLFSATFKKRIEKLARDV 134
+ S++ K+ +EK+A ++
Sbjct: 171 AINSSSLKEEMEKMAANL 188
>gnl|CDD|217607 pfam03544, TonB, Gram-negative bacterial tonB protein.
Length = 79
Score = 26.1 bits (58), Expect = 5.1
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALS 94
+ S GH D+ ++A+RK + P P + V +S
Sbjct: 36 LKSSGHGILDKAALEAVRKWRF-PPAPKNGKPVTVKVS 72
>gnl|CDD|164550 CHL00164, psaK, photosystem I subunit X; Validated.
Length = 86
Score = 26.3 bits (58), Expect = 5.4
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 46 ITVSGADPPYPVSSFGHFGFDEVL 69
I V G P P+S FG E+L
Sbjct: 39 IQVRGLGPSIPISGLKGFGLPELL 62
>gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated.
Length = 405
Score = 27.7 bits (62), Expect = 5.7
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 22/61 (36%)
Query: 77 EYTSPTPIQAQAVPAALSGRDIIEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLT 136
+Y + TPIQ A AAL+G PQ D + R +KKR RDVL
Sbjct: 268 DYGAFTPIQVAAT-AALNG-----PQ-----DCIAEMR------ELYKKR-----RDVLV 305
Query: 137 D 137
+
Sbjct: 306 E 306
>gnl|CDD|237613 PRK14109, PRK14109, bifunctional glutamine-synthetase
adenylyltransferase/deadenyltransferase; Provisional.
Length = 1007
Score = 27.5 bits (62), Expect = 6.3
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 8/29 (27%)
Query: 19 EKNFYQP--------HEDIARLTPQEAQE 39
EK FY+P + ARL+P+ A+
Sbjct: 495 EKLFYRPLLEAVARLSAEEARLSPEAARR 523
>gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional.
Length = 401
Score = 27.1 bits (60), Expect = 7.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIV 142
Q+ + + P+ Q LFSAT I +L + DP +I+
Sbjct: 190 QIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRIL 230
Score = 27.1 bits (60), Expect = 7.8
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
V SF +E L++ + + P+ IQ + + L G D I
Sbjct: 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTI 69
>gnl|CDD|216395 pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This
TIM alpha/beta barrel structure is found in xylose
isomerase and in endonuclease IV (EC:3.1.21.2). This
domain is also found in the N termini of bacterial
myo-inositol catabolism proteins. These are involved in
the myo-inositol catabolism pathway, and is required
for growth on myo-inositol in Rhizobium leguminosarum
bv. viciae.
Length = 202
Score = 26.6 bits (59), Expect = 8.3
Identities = 12/65 (18%), Positives = 22/65 (33%)
Query: 15 YEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALR 74
++ VE F P + +E + L + G+ +S +P + L R
Sbjct: 9 FDGVELFFDYPRPASDKEEIEELKALLKEYGLEISSLNPSLGLLEPDEHERAAALEALKR 68
Query: 75 KCEYT 79
E
Sbjct: 69 AIELA 73
>gnl|CDD|131269 TIGR02214, spoVD_pbp, stage V sporulation protein D. This model
describes the spoVD subfamily of homologs of the cell
division protein FtsI, a penicillin binding protein.
This subfamily is restricted to Bacillus subtilis and
related Gram-positive species with known or suspected
endospore formation capability. In these species, the
functional equivalent of FtsI is desginated PBP-2B, a
paralog of spoVD [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan,
Cellular processes, Sporulation and germination].
Length = 636
Score = 27.1 bits (60), Expect = 8.4
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 82 TPIQ-AQAVPAALSGRDIIEPQVRSICDHVRPNRQTLLFSATFKKRI 127
TPIQ AV A +G +I+P + + N F K+++
Sbjct: 409 TPIQLMTAVNAVANGGKLIQPHIMKEISDSQNNAVDQTFEPEVKRQV 455
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 25.7 bits (57), Expect = 8.7
Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 119 FSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQ--VVINLPQTQKLTWLTHNLVEF 176
S + + A+ L I VQGD +A + V L L L
Sbjct: 33 LSPEMLELARENAKLALGPRITFVQGDAPDALDLLEGFDAVFIGGGGGDLLELLDALASL 92
Query: 177 LSTGSLLIFVT 187
L G L+
Sbjct: 93 LKPGGRLVLNA 103
>gnl|CDD|173828 cd08200, catalase_peroxidase_2, C-terminal non-catalytic domain
of catalase-peroxidases. This is a subgroup of
heme-dependent peroxidases of the plant superfamily
that share a heme prosthetic group and catalyze a
multistep oxidative reaction involving hydrogen
peroxide as the electron acceptor. Catalase-peroxidases
can exhibit both catalase and broad-spectrum peroxidase
activities depending on the steady-state concentration
of hydrogen peroxide. These enzymes are found in many
archaeal and bacterial organisms where they neutralize
potentially lethal hydrogen peroxide molecules
generated during photosynthesis or stationary phase.
Along with related intracellular fungal and plant
peroxidases, catalase-peroxidases belong to plant
peroxidase superfamily. Unlike the eukaryotic enzymes,
they are typically comprised of two homologous domains
that probably arose via a single gene duplication
event. The heme binding motif is present only in the
N-terminal domain; the function of the C-terminal
domain is not clear.
Length = 297
Score = 26.8 bits (60), Expect = 9.3
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 22/50 (44%)
Query: 3 DPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAK---SGITVS 49
DP+P +D+ I + L+AK SG+TVS
Sbjct: 1 DPIPAVDYELI-------------------DDADIAALKAKILASGLTVS 31
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.405
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,532,971
Number of extensions: 1077944
Number of successful extensions: 1064
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1062
Number of HSP's successfully gapped: 48
Length of query: 222
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 129
Effective length of database: 6,812,680
Effective search space: 878835720
Effective search space used: 878835720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)