RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17636
(222 letters)
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 112 bits (283), Expect = 2e-29
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 100 EPQVRSICDHV--RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVV 157
+R I HV RP QTL+FSATF + I+++A + L + + + G +G A +D+ Q +
Sbjct: 221 SEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTI 280
Query: 158 INLPQTQKLTWLTHNLVEFLST--GSLLIFVTKK 189
+ + K + L+E LS ++FV K
Sbjct: 281 YEVNKYAKRSK----LIEILSEQADGTIVFVETK 310
Score = 101 bits (254), Expect = 2e-25
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 17 EVEKNFYQPHEDIARLTPQEAQELRA--------KSGITVSGADPPYPVSSFGHFGFDEV 68
E FY P E + + + + V+G+D P P+ F ++
Sbjct: 7 EFPGEFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDI 66
Query: 69 LMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
++ + K Y PTPIQ ++P SGRD++
Sbjct: 67 IIDNVNKSGYKIPTPIQKCSIPVISSGRDLM 97
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding,
hydrolase, nucleotide- RNA-binding, methylation, mRNA
processing, mRNA S nucleus; HET: ADP; 2.60A {Homo
sapiens}
Length = 242
Score = 106 bits (266), Expect = 2e-28
Identities = 27/70 (38%), Positives = 37/70 (52%)
Query: 30 ARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAV 89
+ T QE + R ITV G + P PV +F F +M + + +T PT IQAQ
Sbjct: 1 SMRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 60
Query: 90 PAALSGRDII 99
P ALSG D++
Sbjct: 61 PVALSGLDMV 70
Score = 86.1 bits (214), Expect = 8e-21
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDI 146
EPQ+R I D +RP+RQTL++SAT+ K + +LA D L D I I G +
Sbjct: 194 EPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 108 bits (272), Expect = 6e-28
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 100 EPQVRSICDH--VRP--NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQ 155
EPQ+R I + + P R T++FSATF K I+ LARD L + I + G +G + +ITQ
Sbjct: 193 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 252
Query: 156 VVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK 189
V+ + ++ K ++L L L+FV K
Sbjct: 253 KVVWVEESDKRSFLLDLLNATGKDSLTLVFVETK 286
Score = 89.1 bits (222), Expect = 5e-21
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 46 ITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
+ +G + P + SF E++M + YT PTP+Q A+P RD++
Sbjct: 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLM 56
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural
genomics, structural GEN consortium, SGC, rRNA,
ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Length = 245
Score = 92.6 bits (231), Expect = 3e-23
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 35 QEAQELRAKSGITVSGADPPYPVSSFGH----FGFDEVLMKALRKCEYTSPTPIQAQAVP 90
+ LR K I V G D P P+++F + + L++ + + PTPIQ QA+P
Sbjct: 2 MKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIP 61
Query: 91 AALSGRDII 99
L GR+++
Sbjct: 62 VMLHGRELL 70
Score = 73.8 bits (182), Expect = 3e-16
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 100 EPQVRSICDHVRP-NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANT 151
Q+ SI + +FSATF +E+ + L + I + IG N+
Sbjct: 196 RDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVS---IGARNS 245
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA,
N project on protein structural and functional analyses;
2.40A {Dugesia japonica} SCOP: c.37.1.19
Length = 253
Score = 91.1 bits (227), Expect = 1e-22
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 100 EPQVRSICDHVRP----NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQ 155
EPQ+R I + NRQTL+FSATF K I+KLA D L + I + G +G + I Q
Sbjct: 192 EPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251
Query: 156 VV 157
+
Sbjct: 252 EI 253
Score = 84.1 bits (209), Expect = 5e-20
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 46 ITVSGAD--PPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
++V+G D + +F D + + Y PTPIQ A+PA L RDI+
Sbjct: 9 VSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIM 64
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX,
structural genomics, structural genomi consortium, SGC,
ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Length = 228
Score = 81.4 bits (202), Expect = 3e-19
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
EPQ+R I VRP+RQT++ SAT+ + +LA L DP+ +
Sbjct: 185 EPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIV 226
Score = 78.8 bits (195), Expect = 3e-18
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 46 ITVSGADPPYPVSSFGH-FGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
+ P P F F L+K++ + PTPIQ+QA P L G D+I
Sbjct: 7 KSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLI 61
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 67.2 bits (165), Expect = 3e-13
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI-VQGDIGEANTD-ITQVVIN 159
Q I + N Q +LFSATF +R+EK A + +I ++ + E + + I Q+ ++
Sbjct: 280 QSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTE--ELSVEGIKQLYMD 337
Query: 160 LP-QTQKLTWLTHNLVEFLSTGSLLIFV-TK-KCFELVN-LIAKNY 201
+ K L L L+ G +IF K E+ + A +
Sbjct: 338 CQSEEHKYNVLV-ELYGLLTIGQSIIFCKKKDTAEEIARRMTADGH 382
Score = 28.3 bits (64), Expect = 1.9
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
Query: 84 IQAQAVPAALSG--RDII 99
IQ +A+P LS R++I
Sbjct: 145 IQEKALPLLLSNPPRNMI 162
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural
genomics, structural GEN consortium, SGC, ATP-binding,
hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Length = 249
Score = 64.6 bits (158), Expect = 7e-13
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 24 QPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTP 83
+ ++ E +F G +VL +A + +T PT
Sbjct: 9 SGVDLGTENLYFQSMEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTK 68
Query: 84 IQAQAVPAALSGRDII 99
IQ +A+P AL GRDII
Sbjct: 69 IQIEAIPLALQGRDII 84
Score = 56.9 bits (138), Expect = 4e-10
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
E +V I + +R+T LFSAT K+++KL R L +P+K
Sbjct: 204 ETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKC 245
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD;
ATP-binding, hydrolase, nucleotide-binding, RNA binding
protein, structural genomics; 1.90A {Sulfolobus
tokodaii}
Length = 337
Score = 62.9 bits (154), Expect = 6e-12
Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 12/108 (11%)
Query: 103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ 162
++ I + T LFSAT + I K+ +D +T+ +I + ++ +++
Sbjct: 150 IKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEI---EACIGLANVEHKFVHVKD 206
Query: 163 TQKLTWLTHNLVEFLSTGSLLIFV-TKKCFELVNLIAKNYWLIQAVGI 209
+ + +++FV T+ V + + A+ +
Sbjct: 207 DWRS--KVQ-ALRENKDKGVIVFVRTRNR---VAKLVR--LFDNAIEL 246
Score = 52.5 bits (127), Expect = 2e-08
Identities = 8/34 (23%), Positives = 23/34 (67%)
Query: 66 DEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
+E + +A+R+ + + T +Q++ +P L G++++
Sbjct: 2 NEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVV 35
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural
genomics, structural genomics consort ATP-binding,
hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo
sapiens}
Length = 262
Score = 60.4 bits (147), Expect = 3e-11
Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 7 PIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFD 66
HS+ V E ++Q ++ + E + + ++GA +S + +
Sbjct: 4 HHHHSSGVDLGTENLYFQSMNNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCN-LVN 62
Query: 67 EVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
E +KA+++ +T+ T IQ +++ L GRD++
Sbjct: 63 ENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLL 95
Score = 51.9 bits (125), Expect = 3e-08
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLT-DPIKI 141
E +++ I + RQT+LFSAT +++E LAR L +P+ +
Sbjct: 219 EEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYV 261
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic
resolution, AMP complex, ribosome biogenesis,
thermophilic, hydrolase; HET: AMP; 1.20A {Thermus
thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A*
3mwl_A* 3nbf_A* 3nej_A
Length = 207
Score = 59.5 bits (145), Expect = 3e-11
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 59 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
F F +++AL T+PTPIQA A+P AL G+D+I
Sbjct: 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLI 42
Score = 52.9 bits (128), Expect = 8e-09
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
+V ++ P+RQTLLFSAT ++LA + +P+ I
Sbjct: 163 EEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLI 203
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural
genomics, structural genomic consortium, SGC,
hydrolase; HET: ADP; 2.15A {Homo sapiens}
Length = 236
Score = 59.2 bits (144), Expect = 5e-11
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
++ F F + +K L++ +Y T IQ Q + AL G+D++
Sbjct: 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVL 66
Score = 56.9 bits (138), Expect = 3e-10
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
+ ++ +++ RQTLLFSAT K ++ LAR L +P +
Sbjct: 189 ADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYV 230
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 59.9 bits (146), Expect = 6e-11
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANT--DITQVVI 158
+ I + P Q+LLFSATF +++ L P +I ++ E T ITQ
Sbjct: 182 TIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEI---NLMEELTLKGITQYYA 238
Query: 159 NLPQTQKLTWLTHNLVEFLSTGSLLIFV--TKKCFELVN-LIAKNY 201
+ + QKL L L L +IF T + L + Y
Sbjct: 239 FVEERQKLHCLNT-LFSKLQINQAIIFCNSTNRVELLAKKITDLGY 283
Score = 53.7 bits (130), Expect = 7e-09
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
++F F L+ + + + P+PIQ +A+P A++GRDI+
Sbjct: 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDIL 62
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase,
mRNA-export, nuclear pore, hydrolase-RNA complex; HET:
ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A*
3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A
3pev_A* 3peu_A*
Length = 395
Score = 59.5 bits (145), Expect = 1e-10
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI-VQGDIGEANTD-ITQVVIN 159
Q + + + Q +LFSATF + + A+ ++ + + +Q + E N D I Q+ ++
Sbjct: 166 QCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTN--EVNVDAIKQLYMD 223
Query: 160 LP-QTQKLTWLTHNLVEFLSTGSLLIFV-TK-KCFELVN-LIAKNY 201
+ K LT L ++ GS +IFV TK L L ++ +
Sbjct: 224 CKNEADKFDVLT-ELYGLMTIGSSIIFVATKKTANVLYGKLKSEGH 268
Score = 47.9 bits (115), Expect = 7e-07
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 55 YPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII 99
SF G L+K + ++ P+ IQ +A+P L R++I
Sbjct: 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMI 48
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 59.5 bits (145), Expect = 1e-10
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI-VQGDIGEANTDITQVVIN 159
V+ I +Q ++FSAT K I + R + DP++I V + + Q +
Sbjct: 172 RDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVK 231
Query: 160 LPQTQKLTWLTHNLVEFLSTGSLLIFV--TKKCFELVN-LIAKNY 201
L +K L +L++ L ++IFV ++C L L+ +N+
Sbjct: 232 LKDNEKNRKLF-DLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF 275
Score = 51.0 bits (123), Expect = 6e-08
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
S F F L++A+ C + P+ +Q + +P A+ G D++
Sbjct: 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVL 49
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus
stearothermophilus} SCOP: c.37.1.19
Length = 219
Score = 58.0 bits (141), Expect = 1e-10
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
+ F F F +++A++ + PT IQ + +P AL G ++
Sbjct: 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMV 45
Score = 46.8 bits (112), Expect = 9e-07
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
V I + + Q L+FSAT ++++ + + +P +
Sbjct: 170 DVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFV 209
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein,
ATPase, RNA binding protein; 3.00A {Methanocaldococcus
jannaschii} SCOP: c.37.1.19 c.37.1.19
Length = 367
Score = 57.5 bits (140), Expect = 4e-10
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 19/107 (17%)
Query: 103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDP--IKIVQGDIGEANTDITQVVINL 160
V I + +++ LLFSAT + I LA+ + D IK + N +I Q + +
Sbjct: 168 VEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA------KINANIEQSYVEV 221
Query: 161 PQTQKLTWLTHNLVE---FLSTGSLLIFV-TKK-CFELVN-LIAKNY 201
+ ++ L L++ F L+F TK+ EL + L +
Sbjct: 222 NENERFEALC-RLLKNKEFYG----LVFCKTKRDTKELASMLRDIGF 263
Score = 51.8 bits (125), Expect = 3e-08
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 59 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGR-DII 99
+F + ++ A+R + PT IQ + +P L+ +I+
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIV 48
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 57.6 bits (140), Expect = 5e-10
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI-VQGDIGEANTD-ITQVVIN 159
Q I + N Q LLFSATF+ + K A+ V+ DP I ++ + E D I Q +
Sbjct: 189 QSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE--EETLDTIKQYYVL 246
Query: 160 LPQ-TQKLTWLTHNLVEFLSTGSLLIFV-TKK 189
+K L NL ++ +IF T+K
Sbjct: 247 CSSRDEKFQALC-NLYGAITIAQAMIFCHTRK 277
Score = 47.9 bits (115), Expect = 6e-07
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 53 PPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII 99
P Y V SF L++ + + P+ IQ A+P L+ +++I
Sbjct: 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLI 68
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 57.3 bits (139), Expect = 5e-10
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI-VQGDIGEANTD-ITQVVIN 159
Q I + N Q LLFSATF+ + K A+ V+ DP I ++ + E D I Q +
Sbjct: 256 QSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE--EETLDTIKQYYVL 313
Query: 160 LP-QTQKLTWLTHNLVEFLSTGSLLIFV-TKK 189
+ +K L NL ++ +IF T+K
Sbjct: 314 CSSRDEKFQALC-NLYGAITIAQAMIFCHTRK 344
Score = 47.7 bits (114), Expect = 1e-06
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 53 PPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII 99
P Y V SF L++ + + P+ IQ A+P L+ +++I
Sbjct: 87 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLI 135
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 57.5 bits (139), Expect = 5e-10
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 15/107 (14%)
Query: 96 RDIIE--PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDP--IKIVQGDIGEANT 151
I + S N +TLLFSAT +++KLA +++ + + D E
Sbjct: 197 ETISGILNEKNS---KSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 253
Query: 152 --DITQVVINLPQTQKLTWLTH-----NLVEFLSTGSLLIFV-TKKC 190
I Q V+ + + + E S +IF T K
Sbjct: 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKF 300
Score = 52.1 bits (125), Expect = 3e-08
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 49 SGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII 99
+ S D+ + KA+ + E+ TP+Q + + LS D+I
Sbjct: 12 DNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVI 64
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation,
rRNA processing, mRNA splicing, mRNA transport; HET:
ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB:
2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B
2zu6_A
Length = 410
Score = 56.8 bits (138), Expect = 9e-10
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI-VQGDIGEANTD-ITQVVI 158
Q+ + ++ P Q +L SAT I ++ +TDPI+I V+ D E + I Q +
Sbjct: 198 EQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD--ELTLEGIKQFFV 255
Query: 159 NLPQ-TQKLTWLTHNLVEFLSTGSLLIFV--TKKCFELVN-LIAKNY 201
+ + K L +L + L+ +IF +K L + N+
Sbjct: 256 AVEREEWKFDTLC-DLYDTLTITQAVIFCNTKRKVDWLTEKMREANF 301
Score = 51.4 bits (124), Expect = 6e-08
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
+F G E L++ + + P+ IQ +A+ + GRD+I
Sbjct: 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVI 78
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA
helicase, DEAD-BOX, ATP-binding, HE hydrolase,
mitochondrion; HET: ANP; 1.90A {Saccharomyces
cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 56.7 bits (137), Expect = 1e-09
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 15/106 (14%)
Query: 96 RDIIE--PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDP--IKIVQGDIGEANT 151
I + S N +TLLFSAT +++KLA +++ + + D E
Sbjct: 248 ETISGILNEKNS---KSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 304
Query: 152 --DITQVVINLPQTQKLTWLTH-----NLVEFLSTGSLLIFV-TKK 189
I Q V+ + + + E S +IF T K
Sbjct: 305 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVK 350
Score = 53.6 bits (129), Expect = 1e-08
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 24 QPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTP 83
+ ED + + + + S D+ + KA+ + E+ TP
Sbjct: 38 RSREDDDEVHFDKTTFSKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTP 97
Query: 84 IQAQAVPAALSG--RDII 99
+Q + + LS D+I
Sbjct: 98 VQQKTIKPILSSEDHDVI 115
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 56.4 bits (137), Expect = 1e-09
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI-VQGDIGEANTD-ITQVVI 158
Q+ I + N Q +L SAT + ++ + + DPI+I V+ + E + I Q I
Sbjct: 202 DQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE--ELTLEGIRQFYI 259
Query: 159 NLPQT-QKLTWLTHNLVEFLSTGSLLIFV--TKKCFELVN-LIAKNY 201
N+ + KL L +L E L+ +IF+ +K L + A+++
Sbjct: 260 NVEREEWKLDTLC-DLYETLTITQAVIFINTRRKVDWLTEKMHARDF 305
Score = 51.4 bits (124), Expect = 5e-08
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
V SF E L++ + + P+ IQ +A+ + G D+I
Sbjct: 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVI 81
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 56.3 bits (136), Expect = 1e-09
Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 27/111 (24%)
Query: 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDV---------------------LTDPI 139
+ + FS + +I + +++ D +
Sbjct: 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLL 217
Query: 140 KIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFV-TKK 189
G + +IT V I+ +KL L + +LIF T++
Sbjct: 218 NFTVGRLVSVARNITHVRISSRSKEKLVELLEIFRD-----GILIFAQTEE 263
Score = 49.7 bits (119), Expect = 2e-07
Identities = 5/33 (15%), Positives = 8/33 (24%)
Query: 67 EVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
E +K T Q + G+
Sbjct: 8 EDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFT 40
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 56.0 bits (136), Expect = 2e-09
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI-VQGDIGEANTD-ITQVVI 158
Q+ I + P Q +L SAT + ++ + +P++I V+ D E + I Q +
Sbjct: 181 EQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD--ELTLEGIKQFYV 238
Query: 159 NLPQTQ-KLTWLTHNLVEFLSTGSLLIFV--TKKCFELVN-LIAKNY 201
N+ + + K LT +L + +S +IF +K EL L +
Sbjct: 239 NVEEEEYKYECLT-DLYDSISVTQAVIFCNTRRKVEELTTKLRNDKF 284
Score = 52.5 bits (127), Expect = 2e-08
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 51 ADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
+ V F DE L++ + + P+ IQ +A+ + G D++
Sbjct: 14 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVL 62
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding
protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Length = 206
Score = 54.1 bits (131), Expect = 3e-09
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
+ F + L+ + + + P+PIQ +++P ALSGRDI+
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDIL 44
Score = 47.1 bits (113), Expect = 6e-07
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
+ I + NRQ LL+SATF ++K L P +I
Sbjct: 165 QIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Length = 230
Score = 53.0 bits (128), Expect = 9e-09
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
+ F +++ LR + P+P+Q +A+P G D+I
Sbjct: 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLI 65
Score = 44.9 bits (107), Expect = 6e-06
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
Q+ I + ++Q L SAT+ + + + DP +
Sbjct: 186 EQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFV 226
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family,
gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 1qva_A
Length = 224
Score = 51.8 bits (125), Expect = 2e-08
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
V F DE L++ + + P+ IQ +A+ + G D++
Sbjct: 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVL 55
Score = 46.0 bits (110), Expect = 2e-06
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
Q+ I + P Q +L SAT + ++ + +P++I
Sbjct: 175 QIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRI 214
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX,
structural genomics, helic binding, HOST-virus
interaction, hydrolase; 1.85A {Homo sapiens} PDB:
2g9n_A*
Length = 237
Score = 51.5 bits (124), Expect = 3e-08
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
V +F E L++ + + P+ IQ +A+ + G D+I
Sbjct: 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVI 71
Score = 46.4 bits (111), Expect = 2e-06
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
Q+ I + + Q +L SAT + ++ + + DPI+I
Sbjct: 193 QIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRI 232
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA
processing protein; HET: FLC; 1.94A {Homo sapiens}
SCOP: c.37.1.19
Length = 220
Score = 51.1 bits (123), Expect = 3e-08
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
S F F L++A+ C + P+ +Q + +P A+ G D++
Sbjct: 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVL 55
Score = 43.8 bits (104), Expect = 1e-05
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
V+ I +Q ++FSAT K I + R + DP++I
Sbjct: 179 DVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 2.51A {Homo
sapiens}
Length = 300
Score = 47.8 bits (114), Expect = 7e-07
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 53 PPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII 99
P Y V SF L++ + + P+ IQ A+P L+ +++I
Sbjct: 87 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLI 135
Score = 47.8 bits (114), Expect = 7e-07
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
Q I + N Q LLFSATF+ + K A+ V+ DP I
Sbjct: 256 QSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI 295
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 9e-06
Identities = 42/274 (15%), Positives = 88/274 (32%), Gaps = 94/274 (34%)
Query: 1 YIDPLPPIDHSTIVYEEVEKNFYQ-----PHEDIARLTP----QEA-QELRAKSGITVSG 50
P T +Y E Y +++RL P ++A ELR + + G
Sbjct: 102 QRQPSMM----TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 51 ----------AD----------PPYPVS--SFGHFGFDEVLMKALRK------------C 76
D + + + + E +++ L+K
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 77 EYTSPTPIQAQAVPAALSGRDII--EPQVRS--ICDHVRPNRQTL-LFSATFKKRIEKLA 131
+++S ++ ++ A L R ++ +P + +V+ N + F+ +I L
Sbjct: 218 DHSSNIKLRIHSIQAEL--RRLLKSKPYENCLLVLLNVQ-NAKAWNAFN--LSCKI--L- 269
Query: 132 RDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF 191
+ T +T + TH ++ S +T
Sbjct: 270 --LTT------------RFKQVTDFLSAATT-------THISLDHHSMT-----LTPD-- 301
Query: 192 ELVNLIAKNYWLIQAVGIL---MCPKSPSRLSLV 222
E+ +L+ K +L L + +P RLS++
Sbjct: 302 EVKSLLLK--YLDCRPQDLPREVLTTNPRRLSII 333
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation,
nucleotide-binding, hydrolase, RNA-binding, ATP-binding,
DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Length = 185
Score = 41.0 bits (97), Expect = 8e-05
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 137 DPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK 189
G + +ITQ V+ + ++ K ++L L L+FV K
Sbjct: 4 HHHHENLYFQGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETK 56
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics,
structural genomic consortium, SGC, hydrolase; 2.60A
{Homo sapiens}
Length = 191
Score = 39.1 bits (92), Expect = 3e-04
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 13/64 (20%)
Query: 135 LTDPIKI-------VQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGS--LLIF 185
+ +G A+ D+ Q V + + K+ + L+E L +LIF
Sbjct: 5 HHHSSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVY----LLECLQKTPPPVLIF 60
Query: 186 VTKK 189
KK
Sbjct: 61 AEKK 64
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.028
Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 73/188 (38%)
Query: 5 LPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQ------------ELRAKSGITVSGAD 52
I+ + Y F + T Q Q +L++K G+ + A
Sbjct: 1707 FKEINEHSTSY-----TFRSEKGLL-SAT-QFTQPALTLMEKAAFEDLKSK-GLIPADA- 1757
Query: 53 PPYPVSSF-GH--------------FGFDEVLMKALR---KCEYTSPTPIQAQAVPAALS 94
+F GH + ++ + + AVP
Sbjct: 1758 ------TFAGHSLGEYAALASLADVMSIESLV-EVVFYRGM--------TMQVAVPRDEL 1802
Query: 95 GRDIIEPQVRSICDHVRPNRQTLLFS-ATFKKRIEKLARDVLTDPIKIVQGDIGEA---N 150
GR + + P R FS + +E++ + G + E N
Sbjct: 1803 GRS-----NYGMIA-INPGRVAASFSQEALQYVVERVGKR---------TGWLVEIVNYN 1847
Query: 151 TDITQVVI 158
+ Q V
Sbjct: 1848 VENQQYVA 1855
Score = 31.9 bits (72), Expect = 0.16
Identities = 31/185 (16%), Positives = 56/185 (30%), Gaps = 57/185 (30%)
Query: 25 PHEDIARLTPQEAQELRAKSGITVSGADPPY----PVSSFGHFGFDEVLMKALRKCEYTS 80
P + + L ++ +A SG+ S P+ F + F V S
Sbjct: 382 PPQSLYGLN-LTLRKAKAPSGLDQSRI--PFSERKLK--FSN-RFLPV----------AS 425
Query: 81 P--TPIQAQAVPA----------ALSGRDIIEPQVRSICD--HVRPNRQTLLFSATFKKR 126
P + + A + + +DI P V D +R ++
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-VYDTFDGSDLRVLSGSIS-------- 476
Query: 127 IEKLARDVLTDPI---KIVQGDIGEANTDITQVVINLP-QTQKLTWLTHNLVEFLSTGSL 182
E++ ++ P+ Q T ++ P L LTH + TG
Sbjct: 477 -ERIVDCIIRLPVKWETTTQ-------FKATHILDFGPGGASGLGVLTHRNKD--GTGVR 526
Query: 183 LIFVT 187
+I
Sbjct: 527 VIVAG 531
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia
coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Length = 90
Score = 29.6 bits (67), Expect = 0.19
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVP 90
+S+ F+ + A+R+ Y P V
Sbjct: 45 LSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVN 78
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Length = 106
Score = 26.2 bits (58), Expect = 4.5
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA 91
V + F+ M+AL+K +Y P + +A+
Sbjct: 60 VDANPKRMFEREAMQALKKWKY-QPQIVDGKAIEQ 93
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha
structural genomics, joint center for structural
genomics; HET: MSE; 2.37A {Clostridium acetobutylicum
atcc 824}
Length = 354
Score = 26.7 bits (59), Expect = 5.9
Identities = 15/112 (13%), Positives = 31/112 (27%), Gaps = 23/112 (20%)
Query: 44 SGITVSGADPPYPVSSFGHF-------------------GFDEVLMKALRKCEYTSPTPI 84
+GI + A P S H G +M + K I
Sbjct: 233 NGIAMEIAGNSSPASGAEHLISHALDKFLPNPQLHGIQVGVATYIMSKVHKHREERIKKI 292
Query: 85 QAQA-VPAALSGRDIIEPQVRSICDH---VRPNRQTLLFSATFKKRIEKLAR 132
+ + G ++ + + ++P R T L + +++
Sbjct: 293 LSDTGFFNYVKGLNMKKSDFKRAISEAHLIKPARYTYLHVEKNCETAKEIVD 344
>1qwz_A NPQTN specific sortase B; beta barrel, transpeptidase, hydrolase;
1.75A {Staphylococcus aureus} SCOP: b.100.1.1 PDB:
1qxa_A 1ng5_A 1qx6_A*
Length = 235
Score = 26.5 bits (58), Expect = 7.0
Identities = 11/68 (16%), Positives = 23/68 (33%)
Query: 19 EKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEY 78
+++FY+ H+ I +L+ S + D + + L + RK
Sbjct: 137 KQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVI 196
Query: 79 TSPTPIQA 86
S +
Sbjct: 197 NSDVNVTV 204
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.405
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,399,956
Number of extensions: 195662
Number of successful extensions: 492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 75
Length of query: 222
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 132
Effective length of database: 4,188,903
Effective search space: 552935196
Effective search space used: 552935196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)