RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17636
(222 letters)
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 65.3 bits (158), Expect = 1e-13
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 46 ITVSGAD--PPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
++V+G D + +F D + + Y PTPIQ A+PA L RDI+
Sbjct: 7 VSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIM 62
Score = 54.1 bits (129), Expect = 1e-09
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 100 EPQVRSICDHVR----PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQG 144
EPQ+R I + NRQTL+FSATF K I+KLA D L + I + G
Sbjct: 190 EPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 238
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 62.2 bits (150), Expect = 2e-12
Identities = 12/56 (21%), Positives = 26/56 (46%)
Query: 44 SGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
+ + ++ +F G E L++ + + P+ IQ +A+ + GRD+I
Sbjct: 3 TKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVI 58
Score = 60.6 bits (146), Expect = 5e-12
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
+ Q+ + ++ P Q +L SAT I ++ +TDPI+I
Sbjct: 177 KEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRI 218
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 61.2 bits (147), Expect = 3e-12
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
++F F L+ + + + P+PIQ +A+P A++GRDI+
Sbjct: 1 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDIL 42
Score = 57.3 bits (137), Expect = 7e-11
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGE 148
+ + I + P Q+LLFSATF +++ L P +I ++ E
Sbjct: 161 KTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEI---NLME 206
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 60.6 bits (146), Expect = 6e-12
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 51 ADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
++ V SF E L++ + + P+ IQ +A+ + G D+I
Sbjct: 5 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVI 53
Score = 56.4 bits (135), Expect = 2e-10
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
+ Q+ I + N Q +L SAT + ++ + + DPI+I
Sbjct: 173 KDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI 214
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 59.5 bits (143), Expect = 1e-11
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII---EPQVRSICDHVRPN 113
S F F L++A+ C + P+ +Q + +P A+ G D++ + + V
Sbjct: 1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 59
Score = 59.5 bits (143), Expect = 1e-11
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
V+ I +Q ++FSAT K I + R + DP++I
Sbjct: 164 RRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 205
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 59.4 bits (143), Expect = 1e-11
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
+ Q+ I + P Q +L SAT + ++ + +P++I
Sbjct: 169 KEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRI 210
Score = 59.4 bits (143), Expect = 2e-11
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 54 PYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIEP 101
V F DE L++ + + P+ IQ +A+ + G D++
Sbjct: 6 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQ 53
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 59.2 bits (142), Expect = 1e-11
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
+ I + NRQ LL+SATF ++K L P +I
Sbjct: 164 VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
Score = 59.2 bits (142), Expect = 2e-11
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
+ F + L+ + + + P+PIQ +++P ALSGRDI+
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDIL 44
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 58.5 bits (140), Expect = 3e-11
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDI 98
+ F F F +++A++ + PT IQ + +P AL G +
Sbjct: 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESM 41
Score = 57.4 bits (137), Expect = 8e-11
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
V I + + Q L+FSAT ++++ + + +P +
Sbjct: 165 ITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFV 206
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 53.1 bits (127), Expect = 2e-09
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
V I + +++ LLFSAT + I LA+ + D I
Sbjct: 163 IKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFI 204
Score = 52.4 bits (125), Expect = 4e-09
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 59 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIEPQVRSICDHVRP 112
+F + ++ A+R + PT IQ + +P L+ I Q R+
Sbjct: 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTAS 58
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 202
Score = 45.0 bits (105), Expect = 1e-06
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 64 GFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
+ L++ P QA+AV SG++++
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLL 44
Score = 32.6 bits (73), Expect = 0.025
Identities = 5/39 (12%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 94 SGRDIIEPQVRSICDHVRPNRQTLLFSATFKKRIEKLAR 132
R + + + + + SAT + ++A
Sbjct: 153 EKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE 190
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 206
Score = 41.2 bits (95), Expect = 3e-05
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 57 VSSFGHFGFDEVLMKALRKC-EYTSPTPIQAQAVPAALSGRDII 99
++ + + L++ Y P Q + + LSGRD +
Sbjct: 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCL 44
Score = 33.1 bits (74), Expect = 0.016
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 112 PNRQTLLFSATFKKRIEK--LARDVLTDPI 139
P + +AT + + L DP+
Sbjct: 173 PTLPFMALTATADDTTRQDIVRLLGLNDPL 202
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 37.6 bits (86), Expect = 6e-04
Identities = 10/60 (16%), Positives = 15/60 (25%), Gaps = 2/60 (3%)
Query: 42 AKSGITVSGADPPYPVSSFGHFGFDEVL--MKALRKCEYTSPTPIQAQAVPAALSGRDII 99
A + + A +S F D +L + P IQ L
Sbjct: 3 AAAAAAAAAAAAAAAAASLCLFPEDFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFA 62
Score = 35.6 bits (81), Expect = 0.002
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 99 IEPQVRSICDHVRPNRQTLLFSATFKKRI-EKLARDVL 135
+++ ++ +AT KK +L R +L
Sbjct: 190 FHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLL 227
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 29.2 bits (64), Expect = 0.22
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 150 NTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF 191
N +I Q + + + ++ L L L+F K
Sbjct: 1 NANIEQSYVEVNENERFEALCRLLKN--KEFYGLVFCKTKRD 40
>d1u07a_ d.212.1.2 (A:) TonB {Escherichia coli [TaxId: 562]}
Length = 90
Score = 27.9 bits (62), Expect = 0.30
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVP 90
+S+ F+ + A+R+ Y P V
Sbjct: 45 LSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVN 78
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.5 bits (62), Expect = 0.48
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 153 ITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK 189
+ Q + L +K L L++ L ++IFV
Sbjct: 2 LQQYYVKLKDNEKNRKLFD-LLDVLEFNQVVIFVKSV 37
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 27.0 bits (58), Expect = 1.4
Identities = 5/46 (10%), Positives = 14/46 (30%)
Query: 97 DIIEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIV 142
+ + N + +A+ EK+ + I+ +
Sbjct: 140 NYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHI 185
>d1tf1a_ d.110.2.2 (A:) Transcriptional regulator AllR, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 184
Score = 26.3 bits (57), Expect = 2.5
Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 11/121 (9%)
Query: 22 FYQPHEDIARLTPQEAQELRAKSGITVS-----GADPPYPVSSFGHFGFDEVLMKALRKC 76
++Q H D+ + + L SG TV+ G + R
Sbjct: 6 YFQGHMDVLSVAGPFMRRLMLLSGETVNVAIRNGNEAVLIGQLECKSMVRMCAPLGSRLP 65
Query: 77 EYTSPTPIQAQAVPAALSGRDIIEPQVRSICDHVRPNRQT---LLFSATFKKRIEKLARD 133
+ S +A+ L+ +++ +++ P L + R D
Sbjct: 66 LHASGA---GKALLYPLAEEELMSIILQTGLQQFTPTTLVDMPTLLKDLEQARELGYTVD 122
Query: 134 V 134
Sbjct: 123 K 123
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides
thetaiotaomicron [TaxId: 818]}
Length = 154
Score = 25.9 bits (56), Expect = 3.4
Identities = 8/83 (9%), Positives = 24/83 (28%), Gaps = 19/83 (22%)
Query: 139 IKIVQGDIGEANTDITQVVIN-------------------LPQTQKLTWLTHNLVEFLST 179
I ++GD +V+ + ++ + E +
Sbjct: 2 ILYIKGDATAPIGSGVKVITHICNDIGGWGKGFVLALSKKWKMPEEAYRQWYKSQEEFTL 61
Query: 180 GSLLIFVTKKCFELVNLIAKNYW 202
G++ + + N+I ++
Sbjct: 62 GAVQFVNVENKLYVANMIGQHGI 84
>d1ooya2 c.124.1.2 (A:1-242) Succinate:CoA transferase, N-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 242
Score = 25.7 bits (56), Expect = 4.2
Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 10/83 (12%)
Query: 33 TPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAA 92
EA + +G TV V FG G E L+ AL K T + A
Sbjct: 6 DAVEAVKD-IPNGATVL-------VGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDN 57
Query: 93 LS-GRDIIEPQV-RSICDHVRPN 113
G + Q+ R I +V N
Sbjct: 58 FGLGLLLQSKQIKRMISSYVGEN 80
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 25.4 bits (54), Expect = 6.6
Identities = 11/111 (9%), Positives = 26/111 (23%), Gaps = 16/111 (14%)
Query: 34 PQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAAL 93
P +E+ + G F + ++ + I + A
Sbjct: 146 PALVEEVYNFFRDSRDPVHQALNWMILGDFNREPADLEMNLTVPVRRASEIISPAAATQT 205
Query: 94 SGRDIIEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQG 144
S R + D+ + + R L ++ +
Sbjct: 206 SQRTL---------DYA-------VAGNSVAFRPSPLQAGIVYGARRTQIS 240
>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Carboxydothermus hydrogenoformans [TaxId: 129958]}
Length = 633
Score = 25.2 bits (55), Expect = 8.8
Identities = 7/42 (16%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 14 VYEEVEKNFYQPHEDIARLT---PQEAQELRAKSGITVSGAD 52
V + +F++ + +T P ++ + G+ +G D
Sbjct: 143 VAKAALADFHEKDTPVLWVTTVLPPSRVKVLSAHGLIPAGID 184
>d1uf2c1 a.115.1.3 (C:1-147,C:301-421) RDV p8 {Rice dwarf virus
[TaxId: 10991]}
Length = 268
Score = 24.9 bits (54), Expect = 9.5
Identities = 15/83 (18%), Positives = 21/83 (25%), Gaps = 24/83 (28%)
Query: 18 VEKNFYQPHEDIAR------LTPQEAQELRAKSGITVSGADPPY---------------- 55
+ P D R L P +L + + G D PY
Sbjct: 104 IRPRLQVPMSDTVRQLNNLSLQPSAKPKLYERQNAIMKGLDIPYANRSQAYYTLNSITQT 163
Query: 56 --PVSSFGHFGFDEVLMKALRKC 76
+ F F + LR C
Sbjct: 164 PTSIDDFDVSDFLTTFLSQLRAC 186
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 144
Score = 24.4 bits (53), Expect = 9.8
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 53 PPY-PVSSFGHFGFDEVLMKALRKCEY 78
P Y +++GHFG D + +K +Y
Sbjct: 118 PIYQRTAAYGHFGRDSFPWEVPKKLKY 144
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.405
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 826,958
Number of extensions: 36634
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 37
Length of query: 222
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,281,736
Effective search space: 179443040
Effective search space used: 179443040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.2 bits)