BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17637
(150 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|195127173|ref|XP_002008043.1| GI12051 [Drosophila mojavensis]
gi|193919652|gb|EDW18519.1| GI12051 [Drosophila mojavensis]
Length = 797
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/124 (71%), Positives = 103/124 (83%), Gaps = 7/124 (5%)
Query: 22 HLVRNL-EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80
HLV+ L EGA L+ + + +AE +AN+L VKEY+ LLLHGDMDQ++RN VIT+F
Sbjct: 513 HLVKFLSEGA------VLVFVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKVITQF 566
Query: 81 KRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
KR+EC ILVATDVAARGLDIPHIR VVNYD+ARDIDTHTHRIGRTGRAG KG AYTLVTD
Sbjct: 567 KRKECDILVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTD 626
Query: 141 KDKD 144
KDK+
Sbjct: 627 KDKE 630
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 38/44 (86%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLVTDKDKEFAGHLVRNLEGA+Q VP LM LAM+
Sbjct: 613 RAGEKGNAYTLVTDKDKEFAGHLVRNLEGADQTVPDDLMELAMK 656
>gi|340723638|ref|XP_003400196.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Bombus
terrestris]
Length = 774
Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/107 (77%), Positives = 95/107 (88%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + +LNAEELAN+L +KE+DV+LLHGDMDQ ERN VIT FK++E LVATDVAARG
Sbjct: 505 LIFVTKKLNAEELANNLKLKEFDVMLLHGDMDQIERNKVITAFKKKEVTTLVATDVAARG 564
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPHIRTVVNYD+ARDIDTHTHRIGRTGRAG KG AYTLVT+KDK+
Sbjct: 565 LDIPHIRTVVNYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKE 611
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 41/44 (93%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLVT+KDKEFAGHLVRNLEGANQEVP +LM+LAMQ
Sbjct: 594 RAGEKGTAYTLVTEKDKEFAGHLVRNLEGANQEVPKSLMDLAMQ 637
>gi|350426308|ref|XP_003494399.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Bombus impatiens]
Length = 774
Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/107 (77%), Positives = 95/107 (88%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + +LNAEELAN+L +KE+DV+LLHGDMDQ ERN VIT FK++E LVATDVAARG
Sbjct: 505 LIFVTKKLNAEELANNLKLKEFDVMLLHGDMDQIERNKVITAFKKKEVTTLVATDVAARG 564
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPHIRTVVNYD+ARDIDTHTHRIGRTGRAG KG AYTLVT+KDK+
Sbjct: 565 LDIPHIRTVVNYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKE 611
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 41/44 (93%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLVT+KDKEFAGHLVRNLEGANQEVP +LM+LAMQ
Sbjct: 594 RAGEKGTAYTLVTEKDKEFAGHLVRNLEGANQEVPKSLMDLAMQ 637
>gi|380022612|ref|XP_003695134.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX42-like [Apis florea]
Length = 772
Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/107 (77%), Positives = 95/107 (88%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + +LNAEELAN+L +KE+DVLLLHGDMDQ ERN VIT FK++E LVATDVAARG
Sbjct: 505 LIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKEVSTLVATDVAARG 564
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPHIRTV+NYD+ARDIDTHTHRIGRTGRAG KG AYTLVT+KDK+
Sbjct: 565 LDIPHIRTVLNYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKE 611
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 41/44 (93%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLVT+KDKEFAGHLVRNLEGANQEVP +LM+LAMQ
Sbjct: 594 RAGEKGTAYTLVTEKDKEFAGHLVRNLEGANQEVPKSLMDLAMQ 637
>gi|66522071|ref|XP_624210.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Apis mellifera]
Length = 772
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/107 (77%), Positives = 95/107 (88%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + +LNAEELAN+L +KE+DVLLLHGDMDQ ERN VIT FK++E LVATDVAARG
Sbjct: 505 LIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKEVSTLVATDVAARG 564
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPHIRTV+NYD+ARDIDTHTHRIGRTGRAG KG AYTLVT+KDK+
Sbjct: 565 LDIPHIRTVLNYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKE 611
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 41/44 (93%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLVT+KDKEFAGHLVRNLEGANQEVP +LM+LAMQ
Sbjct: 594 RAGEKGTAYTLVTEKDKEFAGHLVRNLEGANQEVPKSLMDLAMQ 637
>gi|383857449|ref|XP_003704217.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Megachile
rotundata]
Length = 774
Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 84/107 (78%), Positives = 94/107 (87%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + +LNAEELAN+L +KE DVLLLHGDMDQ ERN VIT FK++E LVATDVAARG
Sbjct: 505 LIFVTKKLNAEELANNLKLKELDVLLLHGDMDQIERNKVITAFKKKEVSTLVATDVAARG 564
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPHIRTVVNYD+ARDIDTHTHRIGRTGRAG KG AYTLVT+KDK+
Sbjct: 565 LDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKE 611
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 41/44 (93%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLVT+KDKEFAGHLVRNLEGANQEVP +LM+LAMQ
Sbjct: 594 RAGEKGTAYTLVTEKDKEFAGHLVRNLEGANQEVPKSLMDLAMQ 637
>gi|270012072|gb|EFA08520.1| hypothetical protein TcasGA2_TC006173 [Tribolium castaneum]
Length = 702
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/107 (72%), Positives = 96/107 (89%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + +++AE+LAN L VKE++ LLLHGD++Q+ERN VIT FK++EC +LVATDVAARG
Sbjct: 480 LVFVTKKVDAEQLANDLKVKEFECLLLHGDIEQAERNKVITAFKKKECSLLVATDVAARG 539
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPHIRTVVNYD+ARDIDTHTHRIGRTGRAGN+G AYTL+T KDK+
Sbjct: 540 LDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGNQGTAYTLITPKDKE 586
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 38/44 (86%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAGN+G AYTL+T KDKEF GH+V+NLE A+Q+VP +++LA+Q
Sbjct: 569 RAGNQGTAYTLITPKDKEFVGHIVKNLEAAHQDVPQEVLDLALQ 612
>gi|195376889|ref|XP_002047225.1| GJ13322 [Drosophila virilis]
gi|194154383|gb|EDW69567.1| GJ13322 [Drosophila virilis]
Length = 797
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/124 (70%), Positives = 103/124 (83%), Gaps = 7/124 (5%)
Query: 22 HLVRNL-EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80
HLV+ L EGA L+ + + +AE +AN+L VKE++ LLLHGDMDQ++RN VIT+F
Sbjct: 517 HLVKFLSEGA------VLVFVTKKADAETVANNLIVKEHNCLLLHGDMDQADRNKVITQF 570
Query: 81 KRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
KR+EC ILVATDVAARGLDIPHIR VVNYD+ARDIDTHTHRIGRTGRAG KG AYTLVTD
Sbjct: 571 KRKECDILVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTD 630
Query: 141 KDKD 144
KDK+
Sbjct: 631 KDKE 634
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 38/44 (86%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLVTDKDKEFAGHLVRNLEGA+Q VP LM LAM+
Sbjct: 617 RAGEKGNAYTLVTDKDKEFAGHLVRNLEGADQTVPDDLMELAMK 660
>gi|312373386|gb|EFR21141.1| hypothetical protein AND_17503 [Anopheles darlingi]
Length = 615
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/107 (76%), Positives = 97/107 (90%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + +AE++ANSL VKE +V+LLHGDMDQSERNSVIT+FKR+E ++VATDVAARG
Sbjct: 340 LIFVTKKADAEQVANSLRVKENEVVLLHGDMDQSERNSVITRFKRREVDMMVATDVAARG 399
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPHIRTVVNYD+ARDIDTHTHRIGRTGRAG KG AYTL+TDKDK+
Sbjct: 400 LDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAYTLITDKDKE 446
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTL+TDKDKEF+GHLVRNLEGANQEVP L+ LAMQ
Sbjct: 429 RAGEKGTAYTLITDKDKEFSGHLVRNLEGANQEVPEELLKLAMQ 472
>gi|189239856|ref|XP_974261.2| PREDICTED: similar to CG6418 CG6418-PB [Tribolium castaneum]
Length = 699
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/107 (72%), Positives = 96/107 (89%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + +++AE+LAN L VKE++ LLLHGD++Q+ERN VIT FK++EC +LVATDVAARG
Sbjct: 480 LVFVTKKVDAEQLANDLKVKEFECLLLHGDIEQAERNKVITAFKKKECSLLVATDVAARG 539
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPHIRTVVNYD+ARDIDTHTHRIGRTGRAGN+G AYTL+T KDK+
Sbjct: 540 LDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGNQGTAYTLITPKDKE 586
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 38/44 (86%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAGN+G AYTL+T KDKEF GH+V+NLE A+Q+VP +++LA+Q
Sbjct: 569 RAGNQGTAYTLITPKDKEFVGHIVKNLEAAHQDVPQEVLDLALQ 612
>gi|194751055|ref|XP_001957842.1| GF23818 [Drosophila ananassae]
gi|190625124|gb|EDV40648.1| GF23818 [Drosophila ananassae]
Length = 795
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/124 (69%), Positives = 103/124 (83%), Gaps = 7/124 (5%)
Query: 22 HLVRNL-EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80
HLV+ L EG+ L+ + + +AE +AN+L VKEY+ LLLHGDMDQ++RN VIT+F
Sbjct: 503 HLVKFLSEGS------VLIFVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKVITQF 556
Query: 81 KRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
K++EC ILVATDVAARGLDIPHIR VVNYD+ARDIDTHTHRIGRTGRAG KG A+TLVTD
Sbjct: 557 KKKECDILVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTD 616
Query: 141 KDKD 144
KDK+
Sbjct: 617 KDKE 620
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG A+TLVTDKDKEFAGHLVRNLEGA+Q+VP LM LAM+
Sbjct: 603 RAGEKGNAFTLVTDKDKEFAGHLVRNLEGADQQVPEDLMELAMK 646
>gi|307204462|gb|EFN83169.1| ATP-dependent RNA helicase DDX42 [Harpegnathos saltator]
Length = 770
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/107 (75%), Positives = 95/107 (88%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + +LNAEELAN+L +KE+DVLLLHGDMDQ ERN VIT FK+++ LVATDVAARG
Sbjct: 503 LIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKDVSTLVATDVAARG 562
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPHI+TV+NYD+ARDIDTHTHRIGRTGRAG KG AYTLVT+KDK+
Sbjct: 563 LDIPHIKTVINYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKE 609
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 41/44 (93%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLVT+KDKEF+GHLVRNLEGANQEVP +LM+LAMQ
Sbjct: 592 RAGEKGTAYTLVTEKDKEFSGHLVRNLEGANQEVPKSLMDLAMQ 635
>gi|195171504|ref|XP_002026545.1| GL21821 [Drosophila persimilis]
gi|194111461|gb|EDW33504.1| GL21821 [Drosophila persimilis]
Length = 812
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 86/124 (69%), Positives = 103/124 (83%), Gaps = 7/124 (5%)
Query: 22 HLVRNL-EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80
HLV+ L EG+ L+ + + +AE +AN+L VKE++ LLLHGDMDQ++RN VIT+F
Sbjct: 513 HLVKFLSEGS------VLIFVTKKADAETVANNLLVKEHNCLLLHGDMDQADRNKVITQF 566
Query: 81 KRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
KR+EC ILVATDVAARGLDIPHIR VVNYD+ARDIDTHTHRIGRTGRAG KG A+TLVTD
Sbjct: 567 KRKECDILVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTD 626
Query: 141 KDKD 144
KDK+
Sbjct: 627 KDKE 630
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG A+TLVTDKDKEFAGHLVRNLEGA+QEVP LM LA++
Sbjct: 613 RAGEKGNAFTLVTDKDKEFAGHLVRNLEGADQEVPEDLMELALK 656
>gi|125979227|ref|XP_001353646.1| GA19578 [Drosophila pseudoobscura pseudoobscura]
gi|54642411|gb|EAL31160.1| GA19578 [Drosophila pseudoobscura pseudoobscura]
Length = 812
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 86/124 (69%), Positives = 103/124 (83%), Gaps = 7/124 (5%)
Query: 22 HLVRNL-EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80
HLV+ L EG+ L+ + + +AE +AN+L VKE++ LLLHGDMDQ++RN VIT+F
Sbjct: 513 HLVKFLSEGS------VLIFVTKKADAETVANNLLVKEHNCLLLHGDMDQADRNKVITQF 566
Query: 81 KRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
KR+EC ILVATDVAARGLDIPHIR VVNYD+ARDIDTHTHRIGRTGRAG KG A+TLVTD
Sbjct: 567 KRKECDILVATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTD 626
Query: 141 KDKD 144
KDK+
Sbjct: 627 KDKE 630
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG A+TLVTDKDKEFAGHLVRNLEGA+QEVP LM LA++
Sbjct: 613 RAGEKGNAFTLVTDKDKEFAGHLVRNLEGADQEVPEDLMELALK 656
>gi|345487283|ref|XP_001603249.2| PREDICTED: ATP-dependent RNA helicase DDX42-like [Nasonia
vitripennis]
Length = 793
Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats.
Identities = 83/107 (77%), Positives = 95/107 (88%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + +LNAEELAN+L +KEY+VLLLHGDMDQ ERN VIT FK++ ILVATDVAARG
Sbjct: 505 LIFVTKKLNAEELANNLKLKEYEVLLLHGDMDQVERNKVITSFKKKTVSILVATDVAARG 564
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPHIRTV+NYD+ARDIDTHTHRIGRTGRAG KG AYTLVT+KDK+
Sbjct: 565 LDIPHIRTVINYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKE 611
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/46 (82%), Positives = 42/46 (91%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLN 46
RAG KG AYTLVT+KDKEFAGHLVRNLEGANQEVP +LM+LA+Q N
Sbjct: 594 RAGEKGTAYTLVTEKDKEFAGHLVRNLEGANQEVPKSLMDLALQSN 639
>gi|307190551|gb|EFN74538.1| ATP-dependent RNA helicase DDX42 [Camponotus floridanus]
Length = 769
Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats.
Identities = 83/107 (77%), Positives = 96/107 (89%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + +LNAEELAN+L +KE+DVLLLHGDMDQ ERN VIT FK+++ LVATDVAARG
Sbjct: 504 LIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKDVSTLVATDVAARG 563
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPHI+TVVNYD+ARDIDTHTHRIGRTGRAG KGVAYTLVT+KDK+
Sbjct: 564 LDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDKE 610
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/44 (86%), Positives = 41/44 (93%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTLVT+KDKEFAGHLVRNLEGANQEV +LM+LAMQ
Sbjct: 593 RAGEKGVAYTLVTEKDKEFAGHLVRNLEGANQEVSKSLMDLAMQ 636
>gi|195552710|ref|XP_002076525.1| GD17585 [Drosophila simulans]
gi|194202136|gb|EDX15712.1| GD17585 [Drosophila simulans]
Length = 786
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/124 (67%), Positives = 103/124 (83%), Gaps = 7/124 (5%)
Query: 22 HLVRNL-EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80
HLV+ L EG+ L+ + +++AE ++N+L +KEY+ LLLHGDMDQ++RN VIT+F
Sbjct: 504 HLVKFLSEGS------VLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQF 557
Query: 81 KRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
KR+EC ILVATDVAARGLDIPHIR VVNYD ARDI+THTHRIGRTGRAG KG A+TLVTD
Sbjct: 558 KRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTD 617
Query: 141 KDKD 144
KDK+
Sbjct: 618 KDKE 621
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 38/44 (86%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG A+TLVTDKDKEFAGHLVRNLEGA+Q VP LM LAM+
Sbjct: 604 RAGEKGNAFTLVTDKDKEFAGHLVRNLEGADQLVPDDLMELAMK 647
>gi|195326619|ref|XP_002030023.1| GM24798 [Drosophila sechellia]
gi|194118966|gb|EDW41009.1| GM24798 [Drosophila sechellia]
Length = 786
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/124 (67%), Positives = 103/124 (83%), Gaps = 7/124 (5%)
Query: 22 HLVRNL-EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80
HLV+ L EG+ L+ + +++AE ++N+L +KEY+ LLLHGDMDQ++RN VIT+F
Sbjct: 504 HLVKFLSEGS------VLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQF 557
Query: 81 KRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
KR+EC ILVATDVAARGLDIPHIR VVNYD ARDI+THTHRIGRTGRAG KG A+TLVTD
Sbjct: 558 KRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTD 617
Query: 141 KDKD 144
KDK+
Sbjct: 618 KDKE 621
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 38/44 (86%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG A+TLVTDKDKEFAGHLVRNLEGA+Q VP LM LAM+
Sbjct: 604 RAGEKGNAFTLVTDKDKEFAGHLVRNLEGADQVVPDDLMELAMK 647
>gi|242019547|ref|XP_002430222.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212515318|gb|EEB17484.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 763
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/107 (73%), Positives = 96/107 (89%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + ++NAEE+AN+L +KE+DVLLLHGDMDQ ERN VIT+FK++E ILVATDVAARG
Sbjct: 518 LIFVTKKVNAEEVANNLKLKEFDVLLLHGDMDQIERNKVITQFKKKEVSILVATDVAARG 577
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPHI+TVVNYD+ARDIDTHTHRIGRTGRAG +G AYTLV ++DK+
Sbjct: 578 LDIPHIKTVVNYDIARDIDTHTHRIGRTGRAGERGYAYTLVLNQDKE 624
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 40/44 (90%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG +G AYTLV ++DKEFAGHLVRNLEGANQEVP +LM+LA+Q
Sbjct: 607 RAGERGYAYTLVLNQDKEFAGHLVRNLEGANQEVPKSLMDLALQ 650
>gi|195493240|ref|XP_002094331.1| GE20258 [Drosophila yakuba]
gi|194180432|gb|EDW94043.1| GE20258 [Drosophila yakuba]
Length = 789
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/124 (66%), Positives = 103/124 (83%), Gaps = 7/124 (5%)
Query: 22 HLVRNL-EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80
HLV+ L EG+ L+ + +++AE ++N+L +KEY+ LLLHGDMDQ++RN VIT+F
Sbjct: 507 HLVKFLSEGS------VLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQF 560
Query: 81 KRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
KR+EC ILVATDVAARGLDIPHI+ VVNYD ARDI+THTHRIGRTGRAG KG A+TLVTD
Sbjct: 561 KRKECDILVATDVAARGLDIPHIKNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTD 620
Query: 141 KDKD 144
KDK+
Sbjct: 621 KDKE 624
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG A+TLVTDKDKEFAGHLVRNLEGA+Q+VP LM LAM+
Sbjct: 607 RAGEKGNAFTLVTDKDKEFAGHLVRNLEGADQQVPDDLMELAMK 650
>gi|194868558|ref|XP_001972305.1| GG13958 [Drosophila erecta]
gi|190654088|gb|EDV51331.1| GG13958 [Drosophila erecta]
Length = 786
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/124 (66%), Positives = 103/124 (83%), Gaps = 7/124 (5%)
Query: 22 HLVRNL-EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80
HLV+ L EG+ L+ + +++AE ++N+L +KEY+ LLLHGDMDQ++RN VIT+F
Sbjct: 505 HLVKFLSEGS------VLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQF 558
Query: 81 KRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
KR+EC ILVATDVAARGLDIPHI+ VVNYD ARDI+THTHRIGRTGRAG KG A+TLVTD
Sbjct: 559 KRKECDILVATDVAARGLDIPHIKNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTD 618
Query: 141 KDKD 144
KDK+
Sbjct: 619 KDKE 622
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 39/44 (88%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG A+TLVTDKDKEFAGHLVRNLEGA+Q+VP LM LAM+
Sbjct: 605 RAGEKGNAFTLVTDKDKEFAGHLVRNLEGADQQVPDDLMELAMK 648
>gi|332025702|gb|EGI65860.1| ATP-dependent RNA helicase DDX42 [Acromyrmex echinatior]
Length = 752
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 82/107 (76%), Positives = 95/107 (88%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + +LNAEELAN+L +KE++VLLLHGDMDQ ERN VIT FK++E LVATDVAARG
Sbjct: 488 LIFVTKKLNAEELANNLKLKEFEVLLLHGDMDQIERNKVITAFKKKEVSTLVATDVAARG 547
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPHI+TVVNYD+ARDIDTHTHRIGRTGRAG KG AYTLVT+KDK+
Sbjct: 548 LDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKE 594
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 37/44 (84%), Positives = 41/44 (93%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLVT+KDKEFAGHLVRNLEGANQEVP +L++LAMQ
Sbjct: 577 RAGEKGTAYTLVTEKDKEFAGHLVRNLEGANQEVPKSLIDLAMQ 620
>gi|158284342|ref|XP_306246.4| Anopheles gambiae str. PEST AGAP012523-PA [Anopheles gambiae str.
PEST]
gi|157021090|gb|EAA02455.4| AGAP012523-PA [Anopheles gambiae str. PEST]
Length = 720
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/107 (74%), Positives = 95/107 (88%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + +AEE AN+L +K+ DV+LLHGDMDQSERN VIT+FKR++ I+VATDVAARG
Sbjct: 452 LIFVTKKADAEETANNLRLKDNDVVLLHGDMDQSERNFVITRFKRKDVDIMVATDVAARG 511
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPHIRTVVNYD+ARDIDTHTHRIGRTGRAG KG AYTL+TDKDK+
Sbjct: 512 LDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAYTLITDKDKE 558
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTL+TDKDKEF+GHLVRNLEGANQ+VP LM LAMQ
Sbjct: 541 RAGEKGTAYTLITDKDKEFSGHLVRNLEGANQDVPEDLMKLAMQ 584
>gi|193573502|ref|XP_001943796.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Acyrthosiphon
pisum]
Length = 737
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 80/107 (74%), Positives = 96/107 (89%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + +L+AE+LA++L++KEY+VLLLHGDMDQ+ERN VITKFK+QE I+VATDVAARG
Sbjct: 490 LVFVTKKLDAEQLASTLSLKEYEVLLLHGDMDQAERNKVITKFKKQEVNIMVATDVAARG 549
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDI HIRTVVNYD+ARDIDTHTHRIGRTGRAG KG A+TLVT KD +
Sbjct: 550 LDIAHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAFTLVTPKDHE 596
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 36/44 (81%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG A+TLVT KD EFAGHLVR+LEG QEVP L++LAMQ
Sbjct: 579 RAGEKGTAFTLVTPKDHEFAGHLVRSLEGVGQEVPKPLIDLAMQ 622
>gi|195069805|ref|XP_001997032.1| GH23229 [Drosophila grimshawi]
gi|193906224|gb|EDW05091.1| GH23229 [Drosophila grimshawi]
Length = 649
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/124 (67%), Positives = 101/124 (81%), Gaps = 7/124 (5%)
Query: 22 HLVRNL-EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80
HLV+ L EG L+ + + +AE ++N+L +KE++ LLLHGDMDQ++RN VI +F
Sbjct: 530 HLVKFLSEGG------VLVFVTKKADAETVSNNLLLKEHNCLLLHGDMDQADRNKVIMQF 583
Query: 81 KRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
KR+EC ILVATDVAARGLDIPHIR V+NYD+ARDIDTHTHRIGRTGRAG KG AYTLVTD
Sbjct: 584 KRKECDILVATDVAARGLDIPHIRNVINYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTD 643
Query: 141 KDKD 144
KDKD
Sbjct: 644 KDKD 647
>gi|322799398|gb|EFZ20748.1| hypothetical protein SINV_08125 [Solenopsis invicta]
Length = 764
Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats.
Identities = 81/107 (75%), Positives = 95/107 (88%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + +LNAEELAN+L +KE+DVLLLHGDMDQ ERN VIT FK+++ LVATDVAARG
Sbjct: 504 LIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQLERNKVITAFKKKDVSTLVATDVAARG 563
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPHI+TVVNYD+ARDIDTHTHRIGRTGRAG KG A+TLVT+KDK+
Sbjct: 564 LDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGTAFTLVTEKDKE 610
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 37/44 (84%), Positives = 41/44 (93%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG A+TLVT+KDKEFAGHLVRNLEGANQEVP +LM+LAMQ
Sbjct: 593 RAGEKGTAFTLVTEKDKEFAGHLVRNLEGANQEVPKSLMDLAMQ 636
>gi|24662330|ref|NP_648413.1| CG6418 [Drosophila melanogaster]
gi|7294797|gb|AAF50131.1| CG6418 [Drosophila melanogaster]
gi|16769458|gb|AAL28948.1| LD32732p [Drosophila melanogaster]
gi|220946788|gb|ACL85937.1| CG6418-PB [synthetic construct]
Length = 791
Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats.
Identities = 85/124 (68%), Positives = 103/124 (83%), Gaps = 7/124 (5%)
Query: 22 HLVRNL-EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80
HLV+ L EG+ L+ + +++AE ++N+L +KEY+ LLLHGDMDQ++RN VIT+F
Sbjct: 507 HLVKFLSEGS------VLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQF 560
Query: 81 KRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
KR+EC ILVATDVAARGLDIPHIR VVNYD ARDI+THTHRIGRTGRAG KG AYTLVTD
Sbjct: 561 KRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTD 620
Query: 141 KDKD 144
KDK+
Sbjct: 621 KDKE 624
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/44 (81%), Positives = 38/44 (86%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLVTDKDKEFAGHLVRNLEGA+Q VP LM LAM+
Sbjct: 607 RAGEKGNAYTLVTDKDKEFAGHLVRNLEGADQLVPDDLMELAMK 650
>gi|195021550|ref|XP_001985416.1| GH17046 [Drosophila grimshawi]
gi|193898898|gb|EDV97764.1| GH17046 [Drosophila grimshawi]
Length = 811
Score = 167 bits (424), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 83/124 (66%), Positives = 101/124 (81%), Gaps = 7/124 (5%)
Query: 22 HLVRNL-EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80
HLV+ L EG L+ + + +AE ++N+L +KE++ LLLHGDMDQ++RN VI +F
Sbjct: 530 HLVKFLSEGG------VLVFVTKKADAETVSNNLLLKEHNCLLLHGDMDQADRNKVIMQF 583
Query: 81 KRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
KR+EC ILVATDVAARGLDIPHIR V+NYD+ARDIDTHTHRIGRTGRAG KG AYTLVTD
Sbjct: 584 KRKECDILVATDVAARGLDIPHIRNVINYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTD 643
Query: 141 KDKD 144
KDK+
Sbjct: 644 KDKE 647
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 38/44 (86%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLVTDKDKEFAGHLVRNLEGA+Q VP LM LAM+
Sbjct: 630 RAGEKGNAYTLVTDKDKEFAGHLVRNLEGADQAVPDDLMELAMK 673
>gi|195441137|ref|XP_002068383.1| GK13754 [Drosophila willistoni]
gi|194164468|gb|EDW79369.1| GK13754 [Drosophila willistoni]
Length = 839
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/124 (66%), Positives = 101/124 (81%), Gaps = 7/124 (5%)
Query: 22 HLVRNL-EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80
HLV+ L EG+ L+ + + +AE +A+ L VKE++ LLLHGDMDQ++RN VI +F
Sbjct: 539 HLVKFLAEGS------CLIFVTKKADAETVAHQLLVKEFNCLLLHGDMDQADRNKVIMQF 592
Query: 81 KRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
KR+EC IL+ATDVAARGLDIPHIR VVNYD+ARDIDTHTHRIGRTGRAG KG A+TLVT+
Sbjct: 593 KRKECDILIATDVAARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAHTLVTE 652
Query: 141 KDKD 144
KDK+
Sbjct: 653 KDKE 656
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 38/44 (86%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG A+TLVT+KDKEFAGHLVRNLEGA+Q VP L+ LAM+
Sbjct: 639 RAGEKGNAHTLVTEKDKEFAGHLVRNLEGADQPVPSDLLELAMK 682
>gi|157117281|ref|XP_001653010.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108883352|gb|EAT47577.1| AAEL001317-PA [Aedes aegypti]
Length = 799
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/107 (68%), Positives = 94/107 (87%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + +AE++AN+L +KEYD +LLHGDMDQ++RN VIT+F+++E I+VATDVAARG
Sbjct: 528 LIFVTKKADAEQVANNLRLKEYDPVLLHGDMDQADRNIVITRFRKREVEIMVATDVAARG 587
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPHI+ V+NYD+ARDIDTHTHR+GRTGRAG KG AYTLV DKDK+
Sbjct: 588 LDIPHIKNVINYDIARDIDTHTHRVGRTGRAGEKGTAYTLVVDKDKE 634
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 38/44 (86%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLV DKDKEFAGHLVRNLEGANQEVP LM LAMQ
Sbjct: 617 RAGEKGTAYTLVVDKDKEFAGHLVRNLEGANQEVPEELMKLAMQ 660
>gi|241172335|ref|XP_002410726.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
gi|215494955|gb|EEC04596.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
Length = 658
Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/107 (69%), Positives = 92/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELA +L K+++V LLHGDMDQ++R VI FK+++ ILVATDVAARG
Sbjct: 433 LIFVTKKANAEELAANLKTKDHNVALLHGDMDQNDRTKVIASFKKKDFPILVATDVAARG 492
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPH+RTVVNYD+ARDIDTHTHR+GRTGRAG KGVAYTL+TDK+K+
Sbjct: 493 LDIPHVRTVVNYDIARDIDTHTHRVGRTGRAGEKGVAYTLITDKEKE 539
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%), Gaps = 2/58 (3%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKE 58
RAG KGVAYTL+TDK+KEFAGHLVRNLEGANQ VP +LM+LAMQ A++ +S K+
Sbjct: 522 RAGEKGVAYTLITDKEKEFAGHLVRNLEGANQGVPQSLMDLAMQ--AKKCFSSFWFKK 577
>gi|321476533|gb|EFX87493.1| hypothetical protein DAPPUDRAFT_306483 [Daphnia pulex]
Length = 805
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 77/107 (71%), Positives = 88/107 (82%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEEL+ SL +E V LLHGDMDQ +RN VI+ FK++E ILVATDVAARG
Sbjct: 548 LIFVTKKANAEELSASLKSRELSVALLHGDMDQVDRNQVISSFKKKEMDILVATDVAARG 607
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPHIRTVVNYD+ARDIDTHTHRIGRTGRAG KG AYTLVT DK+
Sbjct: 608 LDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAYTLVTPADKE 654
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/44 (77%), Positives = 36/44 (81%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLVT DKEFAGHLVRNLEGA+Q V LM+LAMQ
Sbjct: 637 RAGEKGTAYTLVTPADKEFAGHLVRNLEGASQVVSEPLMDLAMQ 680
>gi|405969088|gb|EKC34097.1| ATP-dependent RNA helicase DDX42 [Crassostrea gigas]
Length = 788
Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats.
Identities = 76/107 (71%), Positives = 89/107 (83%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELA +L +++ + LLHGDM Q ERN VIT FK++E ILVATDVAARG
Sbjct: 546 LIFVTRKANAEELATNLRARDFKIGLLHGDMSQMERNDVITTFKKKEIPILVATDVAARG 605
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TVVNYD+ARDIDTHTHRIGRTGRAG KG AYTLVT+KDKD
Sbjct: 606 LDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGEKGFAYTLVTEKDKD 652
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/42 (76%), Positives = 35/42 (83%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG KG AYTLVT+KDK+FAGHLVRNLE A Q VP AL+ LA
Sbjct: 635 RAGEKGFAYTLVTEKDKDFAGHLVRNLETAGQHVPHALLELA 676
>gi|355683293|gb|AER97078.1| DEAD box polypeptide 42 [Mustela putorius furo]
Length = 584
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 148 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 207
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 208 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 254
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 237 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 280
>gi|193785182|dbj|BAG54335.1| unnamed protein product [Homo sapiens]
Length = 674
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 238 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 297
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 298 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 344
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 327 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 370
>gi|15930131|gb|AAH15505.1| DDX42 protein [Homo sapiens]
gi|23336904|tpg|DAA00077.1| TPA_exp: SF3b125 DEAD-box protein [Homo sapiens]
gi|158259277|dbj|BAF85597.1| unnamed protein product [Homo sapiens]
Length = 819
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 383 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 442
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 443 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 489
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 472 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 515
>gi|3435312|gb|AAC32396.1| RNA helicase-related protein [Homo sapiens]
Length = 709
Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 383 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 442
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 443 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 489
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 472 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 515
>gi|427788695|gb|JAA59799.1| Putative atp-dependent rna helicase [Rhipicephalus pulchellus]
Length = 870
Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats.
Identities = 73/111 (65%), Positives = 93/111 (83%)
Query: 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV 93
V L+ + + NAEELAN+L +++V LLHGDM+Q++R VI FK+++ ILVATDV
Sbjct: 516 VGSVLIFVTKKANAEELANNLKAHDHNVGLLHGDMEQNDRTKVIASFKKKDFPILVATDV 575
Query: 94 AARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
AARGLDIPH++TVVNYD+ARDIDTHTHR+GRTGRAG KGVAYTL+TDK+K+
Sbjct: 576 AARGLDIPHVKTVVNYDIARDIDTHTHRVGRTGRAGEKGVAYTLITDKEKE 626
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/44 (81%), Positives = 40/44 (90%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+TDK+KEFAGHLVRNLEGA+Q VP LM+LAMQ
Sbjct: 609 RAGEKGVAYTLITDKEKEFAGHLVRNLEGASQHVPQELMDLAMQ 652
>gi|357613478|gb|EHJ68531.1| hypothetical protein KGM_00706 [Danaus plexippus]
Length = 757
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 91/108 (84%), Gaps = 1/108 (0%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + +L AE+ A +L V++YD LLLHGD++Q++RN VIT FKRQE ILVATDVAARG
Sbjct: 507 LIFVTKKLEAEQTAANLGVQQYDALLLHGDLEQADRNKVITAFKRQESNILVATDVAARG 566
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT-DKDKD 144
LDIPHIRTVVNY +ARDIDTHTHR+GRTGRAG G A+TL++ D+DKD
Sbjct: 567 LDIPHIRTVVNYTVARDIDTHTHRVGRTGRAGVPGTAHTLLSRDRDKD 614
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 1 RAGNKGVAYTLVT-DKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG G A+TL++ D+DK+FAGHL+RNLEG QEVP LM LAMQ
Sbjct: 596 RAGVPGTAHTLLSRDRDKDFAGHLLRNLEGVQQEVPEELMQLAMQ 640
>gi|74182539|dbj|BAB25270.3| unnamed protein product [Mus musculus]
Length = 427
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 90/106 (84%)
Query: 39 MNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGL 98
M + + NAEELA++L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARGL
Sbjct: 1 MFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGL 60
Query: 99 DIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
DIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 61 DIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 106
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 89 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 132
>gi|291225668|ref|XP_002732809.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 795
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 76/105 (72%), Positives = 89/105 (84%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + N+EELA++L ++D+ LLHGDMDQSERN VIT FK+Q+ ILVATDVAARG
Sbjct: 506 LIFVTKKANSEELASNLKTHDFDLGLLHGDMDQSERNKVITNFKKQQMPILVATDVAARG 565
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
LDIP I+TVVNYD+ARDIDTHTHRIGRTGRAG KG AYTLVT KD
Sbjct: 566 LDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGIKGTAYTLVTQKD 610
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/44 (75%), Positives = 34/44 (77%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLVT KD FAG LVRNLEGA Q VP LM+LAMQ
Sbjct: 595 RAGIKGTAYTLVTQKDVNFAGDLVRNLEGAGQRVPEKLMDLAMQ 638
>gi|47217820|emb|CAG07234.1| unnamed protein product [Tetraodon nigroviridis]
Length = 737
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 76/105 (72%), Positives = 87/105 (82%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + N+EELA +LT + Y + LLHGDMDQSERN VI+ FK+ ILVATDVAARG
Sbjct: 350 LIFVTKKTNSEELATNLTQEGYSLGLLHGDMDQSERNKVISDFKKSNMPILVATDVAARG 409
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
LDIP IRTVVNYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD
Sbjct: 410 LDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTSKD 454
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/44 (75%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V LM+LAMQ
Sbjct: 439 RAGEKGVAYTLLTSKDSSFAGDLVRNLEGANQAVSKELMDLAMQ 482
>gi|224086197|ref|XP_002193200.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Taeniopygia guttata]
Length = 923
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 74/107 (69%), Positives = 92/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L +++++ LLHGDMDQSERN VI++FK++ ILVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|71896321|ref|NP_001026097.1| ATP-dependent RNA helicase DDX42 [Gallus gallus]
gi|82194905|sp|Q5F485.1|DDX42_CHICK RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
box protein 42
gi|60098437|emb|CAH65049.1| hypothetical protein RCJMB04_2e15 [Gallus gallus]
Length = 944
Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats.
Identities = 74/107 (69%), Positives = 92/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L +++++ LLHGDMDQSERN VI++FK++ ILVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|326934003|ref|XP_003213086.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Meleagris
gallopavo]
Length = 944
Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats.
Identities = 74/107 (69%), Positives = 92/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L +++++ LLHGDMDQSERN VI++FK++ ILVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|348509262|ref|XP_003442169.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Oreochromis
niloticus]
Length = 909
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 74/105 (70%), Positives = 87/105 (82%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + N EELA +L + Y + LLHGDMDQSERN VI+ FK++ +LVATDVAARG
Sbjct: 501 LIFVTKKANCEELATNLNQEGYSLGLLHGDMDQSERNKVISDFKKKNLPVLVATDVAARG 560
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
LDIP IRTVVNYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T+KD
Sbjct: 561 LDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTNKD 605
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/44 (75%), Positives = 36/44 (81%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T+KD FAG LVRNLEGANQ V LM+LAMQ
Sbjct: 590 RAGEKGVAYTLLTNKDTSFAGDLVRNLEGANQSVSKELMDLAMQ 633
>gi|426238255|ref|XP_004013070.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Ovis aries]
Length = 948
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|358417495|ref|XP_003583658.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42
[Bos taurus]
gi|359077050|ref|XP_003587506.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42
[Bos taurus]
Length = 947
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|417405318|gb|JAA49373.1| Putative rna helicase [Desmodus rotundus]
Length = 933
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 74/107 (69%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ ILVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPILVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|410903051|ref|XP_003965007.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Takifugu
rubripes]
Length = 872
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 74/105 (70%), Positives = 88/105 (83%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + N+EELA +LT + Y + LLHGDMDQSERN VI+ FK+ +LVATDVAARG
Sbjct: 495 LIFVTKKTNSEELAANLTQEGYSLGLLHGDMDQSERNKVISDFKKNNMPVLVATDVAARG 554
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
LDIP IRTV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T+KD
Sbjct: 555 LDIPSIRTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTNKD 599
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/44 (75%), Positives = 36/44 (81%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T+KD FAG LVRNLEGANQ V LM+LAMQ
Sbjct: 584 RAGEKGVAYTLLTNKDSTFAGDLVRNLEGANQAVSKELMDLAMQ 627
>gi|194216767|ref|XP_001501051.2| PREDICTED: ATP-dependent RNA helicase DDX42 [Equus caballus]
Length = 935
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|350590222|ref|XP_003131337.3| PREDICTED: ATP-dependent RNA helicase DDX42 [Sus scrofa]
Length = 906
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 467 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 526
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 527 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 573
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 556 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 599
>gi|301778305|ref|XP_002924562.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Ailuropoda
melanoleuca]
Length = 935
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|281351661|gb|EFB27245.1| hypothetical protein PANDA_013938 [Ailuropoda melanoleuca]
Length = 940
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 507 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 566
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 567 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 613
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 596 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 639
>gi|410981498|ref|XP_003997105.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Felis catus]
Length = 934
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|432867546|ref|XP_004071236.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Oryzias latipes]
Length = 903
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 75/105 (71%), Positives = 89/105 (84%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + N++ELA +LT + Y + LLHGDMDQSERN VI+ FK++ ILVATDVAARG
Sbjct: 500 LIFVTKKANSDELAANLTQEGYSLGLLHGDMDQSERNKVISDFKKKNLPILVATDVAARG 559
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
LDIP IRTVVNYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T+KD
Sbjct: 560 LDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTNKD 604
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/44 (75%), Positives = 36/44 (81%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T+KD FAG LVRNLEGANQ V LM+LAMQ
Sbjct: 589 RAGEKGVAYTLLTNKDTSFAGDLVRNLEGANQAVSKELMDLAMQ 632
>gi|395826079|ref|XP_003786247.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Otolemur garnettii]
Length = 936
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|351704433|gb|EHB07352.1| ATP-dependent RNA helicase DDX42 [Heterocephalus glaber]
Length = 935
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 503 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 562
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 563 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 609
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 592 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 635
>gi|345804940|ref|XP_537598.3| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42
isoform 1 [Canis lupus familiaris]
Length = 934
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|354479437|ref|XP_003501916.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Cricetulus griseus]
gi|344243071|gb|EGV99174.1| ATP-dependent RNA helicase DDX42 [Cricetulus griseus]
Length = 928
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 501 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 560
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 561 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 607
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 590 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 633
>gi|291406357|ref|XP_002719521.1| PREDICTED: DEAD box polypeptide 42 protein [Oryctolagus cuniculus]
Length = 935
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|119614684|gb|EAW94278.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_c [Homo
sapiens]
Length = 936
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 500 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 559
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 560 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 606
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 589 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 632
>gi|387763217|ref|NP_001248484.1| ATP-dependent RNA helicase DDX42 [Macaca mulatta]
gi|355568823|gb|EHH25104.1| hypothetical protein EGK_08866 [Macaca mulatta]
gi|355754284|gb|EHH58249.1| hypothetical protein EGM_08053 [Macaca fascicularis]
gi|380809324|gb|AFE76537.1| ATP-dependent RNA helicase DDX42 [Macaca mulatta]
gi|383415577|gb|AFH31002.1| ATP-dependent RNA helicase DDX42 [Macaca mulatta]
gi|384945118|gb|AFI36164.1| ATP-dependent RNA helicase DDX42 [Macaca mulatta]
Length = 937
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|426347141|ref|XP_004041217.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 1 [Gorilla
gorilla gorilla]
gi|426347143|ref|XP_004041218.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 2 [Gorilla
gorilla gorilla]
Length = 938
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|75061727|sp|Q5R7D1.1|DDX42_PONAB RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
box protein 42
gi|55731230|emb|CAH92329.1| hypothetical protein [Pongo abelii]
Length = 942
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|402900734|ref|XP_003913323.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 1 [Papio
anubis]
gi|402900736|ref|XP_003913324.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 2 [Papio
anubis]
Length = 937
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|332243110|ref|XP_003270725.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Nomascus leucogenys]
Length = 938
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|206725493|ref|NP_001126368.1| ATP-dependent RNA helicase DDX42 [Pongo abelii]
Length = 942
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|114669830|ref|XP_001147818.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 7 [Pan
troglodytes]
gi|114669832|ref|XP_001147880.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 8 [Pan
troglodytes]
gi|397480220|ref|XP_003811385.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 1 [Pan
paniscus]
gi|397480222|ref|XP_003811386.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 2 [Pan
paniscus]
gi|410223570|gb|JAA09004.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Pan troglodytes]
gi|410223572|gb|JAA09005.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Pan troglodytes]
gi|410254498|gb|JAA15216.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Pan troglodytes]
gi|410294570|gb|JAA25885.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Pan troglodytes]
gi|410294572|gb|JAA25886.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Pan troglodytes]
gi|410338913|gb|JAA38403.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Pan troglodytes]
gi|410338915|gb|JAA38404.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Pan troglodytes]
Length = 938
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|45446743|ref|NP_031398.2| ATP-dependent RNA helicase DDX42 [Homo sapiens]
gi|45446747|ref|NP_987095.1| ATP-dependent RNA helicase DDX42 [Homo sapiens]
gi|74750541|sp|Q86XP3.1|DDX42_HUMAN RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
box protein 42; AltName: Full=RNA helicase-like protein;
Short=RHELP; AltName: Full=RNA helicase-related protein;
Short=RNAHP; AltName: Full=SF3b DEAD box protein;
AltName: Full=Splicing factor 3B-associated 125 kDa
protein; Short=SF3b125
gi|29420431|dbj|BAC66466.1| RNA helicase-related protein [Homo sapiens]
gi|62205357|gb|AAH93081.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Homo sapiens]
gi|119614683|gb|EAW94277.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Homo
sapiens]
gi|168277556|dbj|BAG10756.1| ATP-dependent RNA helicase DDX42 [synthetic construct]
Length = 938
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|403303756|ref|XP_003942489.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403303758|ref|XP_003942490.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 933
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|431908881|gb|ELK12473.1| ATP-dependent RNA helicase DDX42 [Pteropus alecto]
Length = 927
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 493 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 552
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 553 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 599
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 582 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 625
>gi|51258614|gb|AAH78667.1| DDX42 protein, partial [Homo sapiens]
Length = 919
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 483 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 542
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 543 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 589
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 572 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 615
>gi|296201782|ref|XP_002748184.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Callithrix jacchus]
Length = 934
Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|119614682|gb|EAW94276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Homo
sapiens]
Length = 828
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 392 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 451
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 452 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 498
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 481 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 524
>gi|157817897|ref|NP_001100529.1| ATP-dependent RNA helicase DDX42 [Rattus norvegicus]
gi|149054552|gb|EDM06369.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (predicted) [Rattus
norvegicus]
Length = 929
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 90/107 (84%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|344285247|ref|XP_003414374.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Loxodonta africana]
Length = 934
Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats.
Identities = 72/107 (67%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELA++L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|148702333|gb|EDL34280.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Mus
musculus]
Length = 1012
Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats.
Identities = 72/107 (67%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELA++L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 585 LLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 644
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 645 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 691
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 674 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 717
>gi|345319068|ref|XP_003430097.1| PREDICTED: ATP-dependent RNA helicase DDX42, partial
[Ornithorhynchus anatinus]
Length = 717
Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats.
Identities = 72/107 (67%), Positives = 89/107 (83%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NA+ELAN+L + + + LLHGDMDQSERN VI+ FK++ +LVATDVAARG
Sbjct: 563 LLFVTKKANADELANNLRQEGHSLGLLHGDMDQSERNRVISDFKKKGIPVLVATDVAARG 622
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 623 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 669
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/44 (70%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRN+EGANQ V L++LAMQ
Sbjct: 652 RAGEKGVAYTLLTPKDSNFAGDLVRNMEGANQHVSKELLDLAMQ 695
>gi|390354880|ref|XP_003728430.1| PREDICTED: ATP-dependent RNA helicase DDX42-like
[Strongylocentrotus purpuratus]
Length = 892
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 98/137 (71%), Gaps = 11/137 (8%)
Query: 11 LVTDKDKEFAGHLVR----NLEGANQEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLH 65
+ +D+ ++F L R EG+ L+ + ++NAEELA SL K++ V LLH
Sbjct: 377 IFSDQTRKFPWLLARLVRFTTEGS------VLIFVTKKINAEELATSLKRKDHPYVGLLH 430
Query: 66 GDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRT 125
GDM+Q ERNSVIT FKR+ ILVATDVAARGLDIP I+ VVNYD+ARDIDTHTHRIGRT
Sbjct: 431 GDMNQLERNSVITAFKRRAIPILVATDVAARGLDIPSIKNVVNYDVARDIDTHTHRIGRT 490
Query: 126 GRAGNKGVAYTLVTDKD 142
GRAG KG AYTL+ KD
Sbjct: 491 GRAGEKGTAYTLILKKD 507
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTL+ KD +FAG LVRNLEGA+Q VP +L++LAMQ
Sbjct: 492 RAGEKGTAYTLILKKDNQFAGDLVRNLEGADQAVPKSLLDLAMQ 535
>gi|443706339|gb|ELU02447.1| hypothetical protein CAPTEDRAFT_155002 [Capitella teleta]
Length = 806
Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats.
Identities = 72/107 (67%), Positives = 86/107 (80%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + N ELA++L +++ V L+HGDM Q ERN VI FK++ ILVATDVAARG
Sbjct: 461 LIFVTRKANCIELADNLKTRDFKVGLMHGDMSQGERNEVIGAFKKKAMPILVATDVAARG 520
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIPHIRTVVNYD+ARDIDTHTHR+GRTGRAG KG AYTLVT KDK+
Sbjct: 521 LDIPHIRTVVNYDVARDIDTHTHRVGRTGRAGTKGTAYTLVTFKDKE 567
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/44 (77%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLVT KDKEF HLVRNLEGANQ VP L+ LAMQ
Sbjct: 550 RAGTKGTAYTLVTFKDKEFTPHLVRNLEGANQYVPDELLELAMQ 593
>gi|148702332|gb|EDL34279.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Mus
musculus]
Length = 927
Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats.
Identities = 72/107 (67%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELA++L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 500 LLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 559
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 560 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 606
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 589 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 632
>gi|157838001|ref|NP_082350.3| ATP-dependent RNA helicase DDX42 [Mus musculus]
gi|123796460|sp|Q810A7.3|DDX42_MOUSE RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
box protein 42
gi|74146847|dbj|BAE41388.1| unnamed protein product [Mus musculus]
Length = 929
Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats.
Identities = 72/107 (67%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELA++L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|302318882|ref|NP_001032894.2| ATP-dependent RNA helicase DDX42 [Danio rerio]
Length = 908
Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 74/105 (70%), Positives = 85/105 (80%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + N EELA +L + Y + LLHGDMDQSERN VI FK++ +LVATDVAARG
Sbjct: 504 LVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDVAARG 563
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
LDIP IRTVVNYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD
Sbjct: 564 LDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKD 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 593 RAGEKGVAYTLLTTKDTSFAGDLVRNLEGANQSVSKDLLDLAMQ 636
>gi|327275873|ref|XP_003222696.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Anolis
carolinensis]
Length = 924
Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 88/107 (82%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + + + LLHGDMDQSERN VI+ FK+ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHSLGLLHGDMDQSERNKVISDFKKGAFPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTHKDSN 608
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTHKDSNFAGDLVRNLEGANQNVSKELLDLAMQ 634
>gi|26340024|dbj|BAC33675.1| unnamed protein product [Mus musculus]
Length = 810
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 72/107 (67%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELA++L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 383 LLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 442
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 443 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 489
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 472 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 515
>gi|133777033|gb|AAH43036.4| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus]
Length = 810
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 72/107 (67%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELA++L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 383 LLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 442
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 443 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 489
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 472 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 515
>gi|395532890|ref|XP_003768499.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Sarcophilus harrisii]
Length = 943
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 72/107 (67%), Positives = 90/107 (84%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NA+ELAN+L + +++ LLHGDMDQSERN VI+ FK++ +LVATDVAARG
Sbjct: 502 LLFVTKKANADELANNLRQEGHNLGLLHGDMDQSERNKVISDFKKKGIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/44 (70%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRN+EGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNMEGANQHVTKELLDLAMQ 634
>gi|193784152|dbj|BAG53696.1| unnamed protein product [Homo sapiens]
Length = 484
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 48 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 107
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 108 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 154
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 137 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 180
>gi|198432373|ref|XP_002121386.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
[Ciona intestinalis]
Length = 727
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 85/105 (80%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELA +L + +DV L+HGDM Q +RN+VIT FK+++ LVATDVAARG
Sbjct: 492 LVFVTKKANAEELATNLINEGHDVALIHGDMQQYDRNNVITNFKKKQVATLVATDVAARG 551
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
LDIP IR V+NYD+ARDIDTHTHRIGRTGRAG KG AYTLVT KD
Sbjct: 552 LDIPLIRNVINYDVARDIDTHTHRIGRTGRAGQKGTAYTLVTSKD 596
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 33/44 (75%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLVT KD F+G LVRNLEGA Q VP L+ LA+Q
Sbjct: 581 RAGQKGTAYTLVTSKDTYFSGDLVRNLEGAGQRVPDDLLQLALQ 624
>gi|156391127|ref|XP_001635620.1| predicted protein [Nematostella vectensis]
gi|156222716|gb|EDO43557.1| predicted protein [Nematostella vectensis]
Length = 518
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 88/107 (82%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + +LN+EELA +L +++V LLHGDMDQ ER+ V+ +FK++E ILVATDVAARG
Sbjct: 355 LIFVTKKLNSEELATNLRKNDFEVALLHGDMDQFERSKVLGQFKKREIPILVATDVAARG 414
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDI THTHRIGRTGRAG KG AYTL+T D++
Sbjct: 415 LDIPSIKTVINYDVARDITTHTHRIGRTGRAGEKGNAYTLLTQSDQN 461
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 34/44 (77%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTL+T D+ FAG LVRNLE ANQ VP +LM LAM+
Sbjct: 444 RAGEKGNAYTLLTQSDQNFAGDLVRNLEIANQVVPESLMALAMK 487
>gi|301612200|ref|XP_002935570.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Xenopus (Silurana)
tropicalis]
Length = 943
Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats.
Identities = 72/107 (67%), Positives = 89/107 (83%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L ++ + LLHGDMDQSERN VI+ FK++ +LVATDVAARG
Sbjct: 500 LIFVTKKANAEELANNLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLVATDVAARG 559
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVA+TL+T KD +
Sbjct: 560 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAHTLLTPKDSN 606
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/44 (70%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVA+TL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 589 RAGEKGVAHTLLTPKDSNFAGDLVRNLEGANQYVSKELLDLAMQ 632
>gi|358256339|dbj|GAA57786.1| ATP-dependent RNA helicase DDX42, partial [Clonorchis sinensis]
Length = 453
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 78/132 (59%), Positives = 94/132 (71%), Gaps = 2/132 (1%)
Query: 12 VTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQS 71
+ DK E L RNL E L+ + + ++EE+A L +++ VLL+HGDM QS
Sbjct: 106 IFDKPDEKWDWLTRNLVRLTTE-GSVLVFVTRKTHSEEVARKLKMRDLKVLLIHGDMHQS 164
Query: 72 ERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNK 131
ERNSVI FKRQE ILVATDVA+RGLDIP I V+NY++ARDIDTHTHR+GRTGRAG K
Sbjct: 165 ERNSVIHSFKRQEAPILVATDVASRGLDIPSIHNVINYEVARDIDTHTHRVGRTGRAGVK 224
Query: 132 GVAYTL-VTDKD 142
G AYTL VT KD
Sbjct: 225 GTAYTLFVTGKD 236
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 1 RAGNKGVAYTL-VTDKDK-EFAGHLVRNLEGANQEVPPALMNLAMQL-----NAEELANS 53
RAG KG AYTL VT KD +FA LV++LE + Q VPP L++LA + N L NS
Sbjct: 220 RAGVKGTAYTLFVTGKDPVDFAACLVQHLEASGQNVPPKLLDLAHKCSWFAHNRSSLVNS 279
>gi|163915660|gb|AAI57684.1| LOC100135374 protein [Xenopus (Silurana) tropicalis]
Length = 898
Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats.
Identities = 72/107 (67%), Positives = 89/107 (83%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L ++ + LLHGDMDQSERN VI+ FK++ +LVATDVAARG
Sbjct: 455 LIFVTKKANAEELANNLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLVATDVAARG 514
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVA+TL+T KD +
Sbjct: 515 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAHTLLTPKDSN 561
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/44 (70%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVA+TL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 544 RAGEKGVAHTLLTPKDSNFAGDLVRNLEGANQYVSKELLDLAMQ 587
>gi|74152734|dbj|BAE42635.1| unnamed protein product [Mus musculus]
Length = 929
Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats.
Identities = 71/107 (66%), Positives = 90/107 (84%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELA++L + +++ LLHGDMDQSE N VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSEGNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>gi|147904603|ref|NP_001080569.1| ATP-dependent RNA helicase DDX42 [Xenopus laevis]
gi|82209788|sp|Q7ZY47.1|DDX42_XENLA RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
box protein 42
gi|27696431|gb|AAH43977.1| Ddx42-prov protein [Xenopus laevis]
Length = 947
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 72/107 (67%), Positives = 88/107 (82%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELA +L ++ + LLHGDMDQSERN VI+ FK++ +LVATDVAARG
Sbjct: 499 LVFVTKKANAEELAANLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLVATDVAARG 558
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TVVNYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T K+ +
Sbjct: 559 LDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTSKESN 605
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/44 (70%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T K+ FAG LVRNLEGANQ V L++LAMQ
Sbjct: 588 RAGEKGVAYTLLTSKESNFAGDLVRNLEGANQYVSKELLDLAMQ 631
>gi|268573013|ref|XP_002641484.1| Hypothetical protein CBG09775 [Caenorhabditis briggsae]
Length = 814
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/121 (61%), Positives = 98/121 (80%), Gaps = 4/121 (3%)
Query: 23 LVRNL-EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
L+RNL E A+ + L+ + +L++E+LA L +K++D++LLHGDM Q+ERN + KF
Sbjct: 499 LIRNLVEFAS--LGKVLIFVTKKLDSEDLAKKLKLKDFDIVLLHGDMLQAERNENLLKF- 555
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141
R++ +ILVATDVAARGLDI IRTVVN+D+ARDIDTH HRIGRTGRAG++G AYTLVT+K
Sbjct: 556 RKKSQILVATDVAARGLDISEIRTVVNFDMARDIDTHVHRIGRTGRAGHRGTAYTLVTEK 615
Query: 142 D 142
D
Sbjct: 616 D 616
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 36/44 (81%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG++G AYTLVT+KD E GHLV+NLE +QEVP LM+LAM+
Sbjct: 601 RAGHRGTAYTLVTEKDIETVGHLVKNLESVSQEVPKPLMDLAMK 644
>gi|339232568|ref|XP_003381401.1| ATP-dependent RNA helicase DDX42 [Trichinella spiralis]
gi|316979810|gb|EFV62545.1| ATP-dependent RNA helicase DDX42 [Trichinella spiralis]
Length = 741
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 67/107 (62%), Positives = 87/107 (81%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ ++ +++ EE+A +L K++ V +LHGDM Q ERN VI FK+ + IL+ATDVAARG
Sbjct: 452 LIFISQKVHVEEIAENLKAKDFRVCILHGDMFQHERNQVIHAFKKDDVPILIATDVAARG 511
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+A+D+DTH HRIGRTGRAG KG AYTLVTDKDK+
Sbjct: 512 LDIPTIKTVINYDVAKDLDTHVHRIGRTGRAGEKGFAYTLVTDKDKE 558
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/44 (81%), Positives = 39/44 (88%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLVTDKDKEFAGHLV++LE NQEVP AL+NLAMQ
Sbjct: 541 RAGEKGFAYTLVTDKDKEFAGHLVKSLESVNQEVPTALLNLAMQ 584
>gi|393908338|gb|EJD75019.1| DEAD-box ATP-dependent RNA helicase 24 [Loa loa]
Length = 412
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/123 (58%), Positives = 91/123 (73%), Gaps = 6/123 (4%)
Query: 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
HLVR V L+ + +++AE++AN L VK++ +LLHGDM Q+ERN + F
Sbjct: 113 HLVRF-----SSVGKVLIFVTKKIHAEDVANGLRVKDFKPILLHGDMLQAERNEKLQAF- 166
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141
R++ ILVATDVAARGLDIP IRTV+N+DLARDIDTH HRIGRTGRAG KG AYTLV +
Sbjct: 167 RKDANILVATDVAARGLDIPEIRTVINFDLARDIDTHVHRIGRTGRAGQKGWAYTLVQES 226
Query: 142 DKD 144
D++
Sbjct: 227 DRE 229
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 34/44 (77%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLV + D+E AGHLVRNLE NQ VP +L+ LAM+
Sbjct: 212 RAGQKGWAYTLVQESDREMAGHLVRNLESVNQIVPESLLQLAMK 255
>gi|312097055|ref|XP_003148859.1| DEAD/DEAH box helicase [Loa loa]
Length = 394
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 72/123 (58%), Positives = 91/123 (73%), Gaps = 6/123 (4%)
Query: 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
HLVR V L+ + +++AE++AN L VK++ +LLHGDM Q+ERN + F
Sbjct: 113 HLVRF-----SSVGKVLIFVTKKIHAEDVANGLRVKDFKPILLHGDMLQAERNEKLQAF- 166
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141
R++ ILVATDVAARGLDIP IRTV+N+DLARDIDTH HRIGRTGRAG KG AYTLV +
Sbjct: 167 RKDANILVATDVAARGLDIPEIRTVINFDLARDIDTHVHRIGRTGRAGQKGWAYTLVQES 226
Query: 142 DKD 144
D++
Sbjct: 227 DRE 229
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 34/44 (77%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLV + D+E AGHLVRNLE NQ VP +L+ LAM+
Sbjct: 212 RAGQKGWAYTLVQESDREMAGHLVRNLESVNQIVPESLLQLAMK 255
>gi|449662055|ref|XP_002163251.2| PREDICTED: ATP-dependent RNA helicase DDX42-like [Hydra
magnipapillata]
Length = 790
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 92/121 (76%), Gaps = 5/121 (4%)
Query: 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
H+V G + L+ + + N+EE+A +L + Y++ L+HGD DQ ERN+V+ +FK
Sbjct: 514 HIVEFTSGGS-----VLIFVTKKSNSEEVAANLKEQGYELGLIHGDFDQFERNNVLKQFK 568
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141
+++ ILVATDVAARGLDIP I+TV+NYD+ARDI THTHRIGRTGRAG KG+AYTL+T +
Sbjct: 569 QKQFLILVATDVAARGLDIPSIKTVINYDVARDITTHTHRIGRTGRAGEKGIAYTLITPQ 628
Query: 142 D 142
D
Sbjct: 629 D 629
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG+AYTL+T +D FA LVRNLEGANQ VP L++LA++
Sbjct: 614 RAGEKGIAYTLITPQDTHFAADLVRNLEGANQRVPDELLDLALK 657
>gi|308501725|ref|XP_003113047.1| hypothetical protein CRE_25460 [Caenorhabditis remanei]
gi|308265348|gb|EFP09301.1| hypothetical protein CRE_25460 [Caenorhabditis remanei]
Length = 852
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 74/121 (61%), Positives = 97/121 (80%), Gaps = 4/121 (3%)
Query: 23 LVRNL-EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
L+RNL E A+ + L+ + +L+AE++A L +K+++V+LLHGDM Q+ERN + KF
Sbjct: 518 LIRNLVEFAS--IGKVLIFVTKKLDAEDVAKKLKLKDFEVILLHGDMLQAERNDNLLKF- 574
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141
R++ ILVATDVAARGLDI IRTV+N+D+ARDIDTH HRIGRTGRAG+KG AYTLVT+K
Sbjct: 575 RKKSPILVATDVAARGLDIAEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEK 634
Query: 142 D 142
D
Sbjct: 635 D 635
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/44 (65%), Positives = 36/44 (81%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+KG AYTLVT+KD E GHLV+NLE +QEVP L++LAM+
Sbjct: 620 RAGHKGTAYTLVTEKDIEMVGHLVKNLESVSQEVPKPLLDLAMK 663
>gi|256052028|ref|XP_002569581.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|350646171|emb|CCD59155.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
Length = 840
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/137 (55%), Positives = 96/137 (70%), Gaps = 12/137 (8%)
Query: 12 VTDKDKEFAGHLVRNL-----EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHG 66
+ DK ++ L RNL EG+ L+ + ++++EE+A L ++ VLL+HG
Sbjct: 521 IFDKIEQKWDWLTRNLVRLTTEGS------VLIFVTRKVHSEEVAQKLKSRDLKVLLIHG 574
Query: 67 DMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTG 126
DM QS+RN+VI FKRQE ILVATDVA+RGLDIP I V+NY++ARDIDTHTHRIGRTG
Sbjct: 575 DMHQSDRNTVIQAFKRQEAPILVATDVASRGLDIPSIHNVINYEVARDIDTHTHRIGRTG 634
Query: 127 RAGNKGVAYTL-VTDKD 142
RAG KG AYTL V KD
Sbjct: 635 RAGAKGTAYTLFVAGKD 651
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 1 RAGNKGVAYTL-VTDKDK-EFAGHLVRNLEGANQEVPPALMNLAMQLN 46
RAG KG AYTL V KD +FA LV++LE +Q+VP L+++A++ N
Sbjct: 635 RAGAKGTAYTLFVAGKDPVDFAACLVQHLESGSQKVPQRLLDIALKCN 682
>gi|341897364|gb|EGT53299.1| hypothetical protein CAEBREN_28318 [Caenorhabditis brenneri]
Length = 831
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 75/121 (61%), Positives = 97/121 (80%), Gaps = 4/121 (3%)
Query: 23 LVRNL-EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
L+RNL E A+ + L+ + +L+AE++A L +K++D++LLHGDM Q+ERN + KF
Sbjct: 512 LIRNLVEFAS--LGKVLVFVTKKLDAEDVAKKLKLKDFDIVLLHGDMLQAERNENLLKF- 568
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141
R++ ILVATDVAARGLDI IRTVVN+D+ARDIDTH HRIGRTGRAG+KG AYTLVT+K
Sbjct: 569 RKKSPILVATDVAARGLDIAEIRTVVNFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEK 628
Query: 142 D 142
D
Sbjct: 629 D 629
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/44 (68%), Positives = 36/44 (81%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+KG AYTLVT+KD E GHLV+NLE +QEVP LM+LAM+
Sbjct: 614 RAGHKGTAYTLVTEKDIEMVGHLVKNLESVSQEVPNQLMDLAMK 657
>gi|17552642|ref|NP_497743.1| Protein C46F11.4 [Caenorhabditis elegans]
gi|3874996|emb|CAB03765.1| Protein C46F11.4 [Caenorhabditis elegans]
Length = 811
Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats.
Identities = 73/121 (60%), Positives = 98/121 (80%), Gaps = 4/121 (3%)
Query: 23 LVRNL-EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
L+RNL E A+ + L+ + +L++E++A L +K++D++LLHGDM Q+ERN + KF
Sbjct: 501 LIRNLVEFAS--LGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKF- 557
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141
R++ +ILVATDVAARGLDI IRTV+N+D+ARDIDTH HRIGRTGRAG+KG AYTLVT+K
Sbjct: 558 RKKSQILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEK 617
Query: 142 D 142
D
Sbjct: 618 D 618
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/44 (68%), Positives = 36/44 (81%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+KG AYTLVT+KD E GHLV+NLE +QEVP LM+LAM+
Sbjct: 603 RAGHKGTAYTLVTEKDIEMVGHLVKNLESVSQEVPKPLMDLAMK 646
>gi|340382274|ref|XP_003389645.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Amphimedon
queenslandica]
Length = 704
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/124 (59%), Positives = 84/124 (67%), Gaps = 5/124 (4%)
Query: 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVIT 78
A HLV L + L+ + +EELA++L Y LLHGDM Q +R+ VIT
Sbjct: 457 LAQHLVEFLSAGS-----VLVFCTKKTGSEELAHNLRQSGYQAGLLHGDMCQGDRDEVIT 511
Query: 79 KFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
FK+Q ILVATDVAARGLDI IRTVVNYD+ARDIDTH HRIGRTGRAG KG AYTLV
Sbjct: 512 SFKKQAFPILVATDVAARGLDIASIRTVVNYDMARDIDTHVHRIGRTGRAGTKGTAYTLV 571
Query: 139 TDKD 142
KD
Sbjct: 572 LPKD 575
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 32/44 (72%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLV KD AG LVRNLE A+Q VP L++LAMQ
Sbjct: 560 RAGTKGTAYTLVLPKDVNLAGDLVRNLETADQVVPEELLSLAMQ 603
>gi|402583814|gb|EJW77757.1| hypothetical protein WUBG_11335 [Wuchereria bancrofti]
Length = 373
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 71/130 (54%), Positives = 93/130 (71%), Gaps = 6/130 (4%)
Query: 15 KDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERN 74
K + HLV+ V L+ + +++AE++AN L +K++ +LLHGDM Q+ERN
Sbjct: 194 KWQWLLNHLVKF-----SSVGKVLVFVTKKIHAEDVANRLRMKDFKPILLHGDMLQAERN 248
Query: 75 SVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVA 134
+ F R++ ILVATDVAARGLDIP I+TV+N+DLARDIDTH HRIGRTGRAG KG A
Sbjct: 249 EKLQAF-RKDANILVATDVAARGLDIPEIKTVINFDLARDIDTHVHRIGRTGRAGQKGCA 307
Query: 135 YTLVTDKDKD 144
YTLV + DK+
Sbjct: 308 YTLVQESDKE 317
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 33/44 (75%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTLV + DKE AGHLVRNLE NQ VP L+ LAM+
Sbjct: 300 RAGQKGCAYTLVQESDKEMAGHLVRNLESVNQIVPEPLLQLAMK 343
>gi|324504040|gb|ADY41744.1| ATP-dependent RNA helicase DDX42 [Ascaris suum]
Length = 808
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/107 (61%), Positives = 84/107 (78%), Gaps = 1/107 (0%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEE+A L ++ ++LLHGDM Q+ERN + F R++ ++VATDVAARG
Sbjct: 522 LIFVTKKQNAEEVAQRLQTNDFALVLLHGDMLQAERNEKLHAF-RKDTALMVATDVAARG 580
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP IRTV+N+DLARDIDTH HRIGRTGRAG KG AYTL+TD DK+
Sbjct: 581 LDIPEIRTVINFDLARDIDTHVHRIGRTGRAGEKGYAYTLLTDADKE 627
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTL+TD DKE AGHLVRNLE NQ VP AL+ LA++
Sbjct: 610 RAGEKGYAYTLLTDADKEMAGHLVRNLESVNQTVPDALLQLALK 653
>gi|170595924|ref|XP_001902572.1| DEAD/DEAH box helicase family protein [Brugia malayi]
gi|158589680|gb|EDP28579.1| DEAD/DEAH box helicase family protein [Brugia malayi]
Length = 658
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + +++AE++AN L K++ +LLHGDM Q+ERN + F R++ ILVATDVAARG
Sbjct: 385 LIFVTKKIHAEDVANRLRTKDFKPILLHGDMLQAERNEKLQAF-RKDANILVATDVAARG 443
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+N+DLARDIDTH HRIGRTGRAG +G AYTLV + DK+
Sbjct: 444 LDIPEIKTVINFDLARDIDTHVHRIGRTGRAGQRGWAYTLVQESDKE 490
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 33/44 (75%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG +G AYTLV + DKE AGHLVRNLE NQ VP L+ LAM+
Sbjct: 473 RAGQRGWAYTLVQESDKEMAGHLVRNLESVNQIVPEPLLQLAMK 516
>gi|260800277|ref|XP_002595060.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae]
gi|229280302|gb|EEN51071.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae]
Length = 875
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 64/98 (65%), Positives = 81/98 (82%)
Query: 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV 93
V L+ + + N+EELA++L ++++ LLHGDMDQSERN VI+ FK++ ++VATDV
Sbjct: 481 VGSVLIFVTKKANSEELASNLKAQDFEAGLLHGDMDQSERNKVISDFKKKTIPVMVATDV 540
Query: 94 AARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNK 131
AARGLDIP I+TVVNYD+ARDIDTHTHRIGRTGRAGNK
Sbjct: 541 AARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGNK 578
>gi|391348261|ref|XP_003748366.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Metaseiulus
occidentalis]
Length = 748
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 64/107 (59%), Positives = 84/107 (78%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + + E +A L +++ + +LHGD+DQSER +I FKRQ+ ILVATDV ARG
Sbjct: 494 LIFVTKKASCEIVAEKLKQRDHKLGMLHGDIDQSERTKLIAAFKRQDFPILVATDVCARG 553
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDI HIRTV+N+D ARDIDTHTHR+GRTGRAG KG+AYTL ++KDK+
Sbjct: 554 LDISHIRTVINFDTARDIDTHTHRVGRTGRAGQKGLAYTLFSEKDKE 600
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 35/44 (79%), Positives = 40/44 (90%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG+AYTL ++KDKEFAGHLVRNLEGANQ+VP LM+LAMQ
Sbjct: 583 RAGQKGLAYTLFSEKDKEFAGHLVRNLEGANQKVPKDLMDLAMQ 626
>gi|320166884|gb|EFW43783.1| DEAD/DEAH box helicase [Capsaspora owczarzaki ATCC 30864]
Length = 876
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 62/93 (66%), Positives = 75/93 (80%)
Query: 50 LANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109
+ + L ++ LHGD+DQ+ RN++I KFKR+ ILVATDVAARGLDI HIRTVVN+
Sbjct: 551 VTDKLNKAHFEASALHGDVDQNSRNTIIAKFKRKAFPILVATDVAARGLDISHIRTVVNF 610
Query: 110 DLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
D+ARDIDTHTHRIGRTGRAG KG AYTL++ KD
Sbjct: 611 DVARDIDTHTHRIGRTGRAGEKGSAYTLLSSKD 643
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/44 (63%), Positives = 31/44 (70%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTL++ KD FAG LVRN E ANQ V P L+ LA Q
Sbjct: 628 RAGEKGSAYTLLSSKDASFAGDLVRNFESANQPVSPQLLALASQ 671
>gi|193786020|dbj|BAG50996.1| unnamed protein product [Homo sapiens]
Length = 407
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/77 (76%), Positives = 69/77 (89%)
Query: 68 MDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGR 127
MDQSERN VI+ FK+++ +LVATDVAARGLDIP I+TV+NYD+ARDIDTHTHRIGRTGR
Sbjct: 1 MDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGR 60
Query: 128 AGNKGVAYTLVTDKDKD 144
AG KGVAYTL+T KD +
Sbjct: 61 AGEKGVAYTLLTPKDSN 77
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 60 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 103
>gi|326430393|gb|EGD75963.1| vasa [Salpingoeca sp. ATCC 50818]
Length = 873
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 79/118 (66%), Gaps = 5/118 (4%)
Query: 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80
HLV N L+ + + +AE L S+ + +++HGD+DQ R V++KF
Sbjct: 531 AHLVEMQSAGN-----VLVFVNKKADAETLHESMVAAGFQAVVIHGDIDQITRQEVLSKF 585
Query: 81 KRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
K+Q RILVATDVAARGLDIP +R VVN+D A IDTHTHRIGRTGRAG KG A+TL+
Sbjct: 586 KKQTVRILVATDVAARGLDIPSVRNVVNFDAAMSIDTHTHRIGRTGRAGVKGTAWTLL 643
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG A+TL+ + FA LV +LE A+Q V AL+++A Q
Sbjct: 632 RAGVKGTAWTLLLPTETSFAAQLVESLEAASQRVSDALLHMAEQ 675
>gi|66805957|ref|XP_636700.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
gi|74896924|sp|Q54IV3.1|DDX42_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx42; AltName:
Full=DEAD box protein 42
gi|60465098|gb|EAL63199.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
Length = 986
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 60/105 (57%), Positives = 79/105 (75%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ ++ ++ E+L+++LT + LHGD +Q ER+ I FK + IL+ATDVAARG
Sbjct: 554 LIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDVAARG 613
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
LDIP I+ VVNYD +RDI++HTHRIGRTGRAGN GVAYTL+T KD
Sbjct: 614 LDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKD 658
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/43 (60%), Positives = 34/43 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAM 43
RAGN GVAYTL+T KD F+ L++NLE A+Q VPP L+++AM
Sbjct: 643 RAGNTGVAYTLITPKDIHFSVDLIKNLESASQFVPPELIDVAM 685
>gi|87118190|ref|ZP_01074089.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
gi|86165824|gb|EAQ67090.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
Length = 461
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 75/106 (70%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ ++ + +A+ L + +HGD++Q +R+ V+ +F CRILVATDVAAR
Sbjct: 247 AIVFCNTKIECQTIADFLVDHKISAKAIHGDLEQRDRDQVLVQFSNASCRILVATDVAAR 306
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+ + TV+NYD RDID HTHRIGRTGRAGNKGVA LVTDKD
Sbjct: 307 GIDVKEVDTVINYDTTRDIDVHTHRIGRTGRAGNKGVAINLVTDKD 352
>gi|330842567|ref|XP_003293247.1| hypothetical protein DICPUDRAFT_41749 [Dictyostelium purpureum]
gi|325076448|gb|EGC30233.1| hypothetical protein DICPUDRAFT_41749 [Dictyostelium purpureum]
Length = 551
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 58/105 (55%), Positives = 78/105 (74%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ ++M+ + EEL+ +LT + +HGD +Q ER+ I FK + IL+ATDVAARG
Sbjct: 357 LIFVSMKASVEELSKNLTNFGFKTCSIHGDKNQYERSQTIQTFKEGKVNILIATDVAARG 416
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
LDIP I+ V+N+D +RDI++HTHRIGRTGRAG KG AYTL+T KD
Sbjct: 417 LDIPLIKNVINFDPSRDIESHTHRIGRTGRAGAKGDAYTLITPKD 461
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/43 (60%), Positives = 31/43 (72%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAM 43
RAG KG AYTL+T KD FA LV+NLEGANQ V L+ +A+
Sbjct: 446 RAGAKGDAYTLITPKDVNFAADLVKNLEGANQYVSSDLIQIAL 488
>gi|384498823|gb|EIE89314.1| hypothetical protein RO3G_14025 [Rhizopus delemar RA 99-880]
Length = 674
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 69/86 (80%), Gaps = 2/86 (2%)
Query: 64 LHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIG 123
LHGD+ Q ER V+ FK+ + IL+ATDVAARGLDI ++TV+NYD+ARDID+HTHR+G
Sbjct: 482 LHGDLQQFEREKVLRDFKQSKVNILIATDVAARGLDIKTVKTVINYDIARDIDSHTHRVG 541
Query: 124 RTGRAGNKGVAYTLVTDKDK--DGEL 147
RTGRAG KG AYTL+T K++ GEL
Sbjct: 542 RTGRAGEKGTAYTLITQKEERFAGEL 567
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTL+T K++ FAG LVR+LE + Q V L+NLAM+
Sbjct: 545 RAGEKGTAYTLITQKEERFAGELVRHLEASGQTVSSELLNLAMK 588
>gi|409910746|ref|YP_006889211.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens KN400]
gi|298504304|gb|ADI83027.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens KN400]
Length = 460
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 77/107 (71%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ +L +E+AN+L V+ Y L +HGD+DQ ER+ V+ +F + +LVATDVAAR
Sbjct: 245 ALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVLVATDVAAR 304
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
GLDI + V+NY+L R+ + HTHRIGRTGRAG +G+A +LVT ++
Sbjct: 305 GLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRES 351
>gi|39995299|ref|NP_951250.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens PCA]
gi|39982061|gb|AAR33523.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens PCA]
Length = 460
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 77/107 (71%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ +L +E+AN+L V+ Y L +HGD+DQ ER+ V+ +F + +LVATDVAAR
Sbjct: 245 ALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVLVATDVAAR 304
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
GLDI + V+NY+L R+ + HTHRIGRTGRAG +G+A +LVT ++
Sbjct: 305 GLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRES 351
>gi|313231677|emb|CBY08790.1| unnamed protein product [Oikopleura dioica]
Length = 863
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 80/121 (66%), Gaps = 14/121 (11%)
Query: 38 LMNLAMQLNA--------EELANSLTVKE------YDVLLLHGDMDQSERNSVITKFKRQ 83
L+N +QLN+ A+ +TV E Y ++HGDM Q+ERN VI FK+Q
Sbjct: 464 LLNNIVQLNSVGSLLVFVTRKADCVTVHEELKKSGYKTGVIHGDMHQAERNDVIKAFKKQ 523
Query: 84 ECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+ L+ATDVAARGLDI HI+TV+NYD AR+ DTH HR+GRT RAGN G A +L+T +D
Sbjct: 524 QLATLIATDVAARGLDISHIKTVINYDPARNYDTHVHRVGRTARAGNTGTAISLLTPQDS 583
Query: 144 D 144
+
Sbjct: 584 E 584
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAGN G A +L+T +D E+AG ++R++E Q VP ++ LAM+
Sbjct: 567 RAGNTGTAISLLTPQDSEYAGIVLRSIETTKQPVPDEMLRLAMK 610
>gi|440799028|gb|ELR20089.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 682
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 72/102 (70%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ +A + E L+ SL + LHGD Q+ER SV+ F+ ILVATDVAARG
Sbjct: 449 LIFVATKHGCELLSRSLEEAGFACGGLHGDKAQAERTSVVNGFRAGRVGILVATDVAARG 508
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
LDIP +RTVVNYD+ARDI +H HR+GRTGRAG GVAYTL+T
Sbjct: 509 LDIPTVRTVVNYDVARDIHSHIHRVGRTGRAGQSGVAYTLIT 550
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG GVAYTL+T FA HL +L+ A Q VPP L+ LA
Sbjct: 538 RAGQSGVAYTLITRNQSVFAAHLTSSLQAAKQNVPPELLQLA 579
>gi|313221076|emb|CBY31906.1| unnamed protein product [Oikopleura dioica]
Length = 604
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/100 (56%), Positives = 72/100 (72%), Gaps = 6/100 (6%)
Query: 51 ANSLTVKE------YDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIR 104
A+ +TV E + ++HGDM Q+ERN VI FKRQ+ L+ATDVAARGLDI HI+
Sbjct: 485 ADCVTVHEELKKSGFKTGVIHGDMHQAERNDVIKAFKRQQLATLIATDVAARGLDISHIK 544
Query: 105 TVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
TV+NYD AR+ DTH HR+GRT RAGN G A +L+T +D +
Sbjct: 545 TVINYDPARNYDTHVHRVGRTARAGNTGTAISLLTPQDSE 584
>gi|302798402|ref|XP_002980961.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii]
gi|300151500|gb|EFJ18146.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii]
Length = 653
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + ++ EEL L + V LHGD DQ+ R V+ FK + +LVATDVAARG
Sbjct: 432 LVFASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLVATDVAARG 491
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
LDI I+TVVNYD A+D+DTH HR+GRTGRAG+K GVAYTLVT K+
Sbjct: 492 LDIKSIKTVVNYDTAKDMDTHVHRVGRTGRAGDKEGVAYTLVTQKE 537
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K GVAYTLVT K+ FAG LV A Q VP LM+LAM+
Sbjct: 521 RAGDKEGVAYTLVTQKEARFAGDLVNGFVAAGQNVPSELMDLAMK 565
>gi|281212472|gb|EFA86632.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 728
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 59/102 (57%), Positives = 74/102 (72%)
Query: 41 LAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDI 100
++ ++ +EL+ +L + LHGD DQ ER +I KFK ILVATDVAARGLDI
Sbjct: 505 VSTKVAVDELSMNLVKFGFPSEGLHGDKDQQERTMIINKFKDGSVPILVATDVAARGLDI 564
Query: 101 PHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
IR VVN+D +RDID+HTHRIGRTGRAG +G+AYTL+T KD
Sbjct: 565 NLIRNVVNFDPSRDIDSHTHRIGRTGRAGTQGIAYTLITPKD 606
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLN 46
RAG +G+AYTL+T KD F+ LV++LE ANQ VPP L+++AM N
Sbjct: 591 RAGTQGIAYTLITPKDIHFSAELVKHLEEANQIVPPELISIAMNNN 636
>gi|307721994|ref|YP_003893134.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM
16294]
gi|306980087|gb|ADN10122.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM
16294]
Length = 452
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 71/97 (73%)
Query: 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
+L A+ELA SL + D L +HGD++Q ERN V+ +F + C +LVATDVAARGLDI +
Sbjct: 247 KLEAKELAESLVQNKIDALAIHGDLEQYERNDVLVQFANKSCPVLVATDVAARGLDIKDL 306
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
VVNYDL ++T+THRIGRTGRAG +G+A TL +
Sbjct: 307 SMVVNYDLPHSMETYTHRIGRTGRAGAEGIAVTLYNE 343
>gi|237806841|ref|YP_002891281.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237499102|gb|ACQ91695.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 469
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 80/129 (62%), Gaps = 14/129 (10%)
Query: 25 RNLEGANQEVP-PALMNLA-------------MQLNAEELANSLTVKEYDVLLLHGDMDQ 70
R E NQE PAL+ L M+ +++A++L+ + Y L L+GD++Q
Sbjct: 229 RFFELPNQEAKFPALLKLLQHYQPRSTVIFCNMKHQTQQVADALSAQGYSALALNGDLEQ 288
Query: 71 SERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130
ER+ V+ +F Q C ILVATDVAARGLDI ++ VVNYDL D + H HRIGRTGRAG
Sbjct: 289 RERDQVVVRFSNQSCAILVATDVAARGLDIKELQAVVNYDLTPDPEIHVHRIGRTGRAGQ 348
Query: 131 KGVAYTLVT 139
G+A TL T
Sbjct: 349 TGLALTLTT 357
>gi|168053931|ref|XP_001779387.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669185|gb|EDQ55777.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 741
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 76/106 (71%), Gaps = 1/106 (0%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + +L EEL ++ + V LHGD DQ+ R V+ KFK ILVATDVAARG
Sbjct: 483 LVFASTKLRVEELEGKISEAGFKVAALHGDKDQATRMEVLQKFKNGIYHILVATDVAARG 542
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
LDI I+TVVN D+ARD+D+H HRIGRTGRAG+K GVA+TLVT K+
Sbjct: 543 LDIKSIKTVVNVDIARDMDSHVHRIGRTGRAGDKDGVAHTLVTGKE 588
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K GVA+TLVT K+ FAG LV +L A Q VP LM+LAM+
Sbjct: 572 RAGDKDGVAHTLVTGKEARFAGELVNSLIAAGQNVPTELMDLAMK 616
>gi|302815317|ref|XP_002989340.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii]
gi|300142918|gb|EFJ09614.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii]
Length = 653
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + ++ EEL L + V LHGD DQ+ R V+ FK + +LVATDVAARG
Sbjct: 432 LVFASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLVATDVAARG 491
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
LDI I+TVVNYD A+D+DTH HR+GRTGRAG+K GVAYTLV K+
Sbjct: 492 LDIKSIKTVVNYDTAKDMDTHVHRVGRTGRAGDKEGVAYTLVAQKE 537
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K GVAYTLV K+ FAG LV A Q VP LM+LAM+
Sbjct: 521 RAGDKEGVAYTLVAQKEARFAGDLVNGFVAAGQNVPSELMDLAMK 565
>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
Length = 515
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 73/97 (75%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +L+++ YDV +HGDM Q R V+ +FKR +ILVATDVAARGLDI + V
Sbjct: 254 DELSEALSIRGYDVEGIHGDMKQERREKVLRRFKRGSIKILVATDVAARGLDISGVSHVF 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+DL +D +++ HRIGRTGRAG KG+++T VT ++++
Sbjct: 314 NFDLPQDPESYVHRIGRTGRAGQKGISFTFVTPRERE 350
>gi|317127486|ref|YP_004093768.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
gi|315472434|gb|ADU29037.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
DSM 2522]
Length = 500
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 72/97 (74%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL SL+++ + V LHGDM Q R+ VI KFKR ++VATDVAARGLD+ + V+
Sbjct: 254 DELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVMVATDVAARGLDVNDVSHVI 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+DL +D +++ HRIGRTGRAG KG++Y+ VT K+KD
Sbjct: 314 NFDLPQDSESYVHRIGRTGRAGKKGISYSFVTHKEKD 350
>gi|357417152|ref|YP_004930172.1| ATP-dependent RNA helicase DbpA [Pseudoxanthomonas spadix BD-a59]
gi|355334730|gb|AER56131.1| ATP-dependent RNA helicase DbpA [Pseudoxanthomonas spadix BD-a59]
Length = 458
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 81/128 (63%), Gaps = 6/128 (4%)
Query: 15 KDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERN 74
+ K AG L+ Q V PA++ + + +E+ANSL + L LHGDM+Q +R
Sbjct: 228 RQKALAGLLL------QQRVEPAVVFCNTRKDVDEVANSLQGYGFSALALHGDMEQRDRE 281
Query: 75 SVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVA 134
V+ +F C +LVA+DVAARGLD+ + V NY+L D DT+THRIGRT RAG G+A
Sbjct: 282 EVLVRFSGGSCNVLVASDVAARGLDVEELAAVFNYELPTDTDTYTHRIGRTARAGRSGLA 341
Query: 135 YTLVTDKD 142
++LVT ++
Sbjct: 342 FSLVTPRE 349
>gi|254457791|ref|ZP_05071219.1| dead/deah box helicase domain protein [Sulfurimonas gotlandica GD1]
gi|373867359|ref|ZP_09603757.1| ATP-dependent RNA helicase [Sulfurimonas gotlandica GD1]
gi|207086583|gb|EDZ63867.1| dead/deah box helicase domain protein [Sulfurimonas gotlandica GD1]
gi|372469460|gb|EHP29664.1| ATP-dependent RNA helicase [Sulfurimonas gotlandica GD1]
Length = 453
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 73/101 (72%)
Query: 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
++ A+ELA +L K+ D L +HGD++Q ERN V+ +F + C +L+ATDVAARGLDI +
Sbjct: 249 KIEAKELAENLLKKKIDALAIHGDLEQYERNDVLVQFANRSCPVLIATDVAARGLDIKEM 308
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
V+NYDL +T+THRIGRTGRAG G+A+TL + + D
Sbjct: 309 SMVINYDLPHGDETYTHRIGRTGRAGQDGLAFTLFSQYEAD 349
>gi|147921542|ref|YP_684642.1| ATP-dependent RNA helicase [Methanocella arvoryzae MRE50]
gi|110620038|emb|CAJ35316.1| ATP-dependent RNA helicase [Methanocella arvoryzae MRE50]
Length = 497
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 86/137 (62%), Gaps = 3/137 (2%)
Query: 7 VAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHG 66
V Y + + ++F L R L+ E+ A++ +A ++ ELA +L + Y L LHG
Sbjct: 216 VQYYIEMPEKQKFEA-LTRLLDQEKPEL--AIVFVATRIRVGELAKALVERGYHALGLHG 272
Query: 67 DMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTG 126
D+ Q +R + + KFK E ILVATDVAARGLDI + V N+D+ RD D++ HRIGRTG
Sbjct: 273 DLLQYQRENTLDKFKAGEVSILVATDVAARGLDIQGVTHVYNFDIPRDPDSYVHRIGRTG 332
Query: 127 RAGNKGVAYTLVTDKDK 143
RAGN G A T VT KDK
Sbjct: 333 RAGNAGTATTFVTPKDK 349
>gi|325185113|emb|CCA19605.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 711
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 73/103 (70%), Gaps = 4/103 (3%)
Query: 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
++ EEL+ +L Y LLHGD Q +R+S + FK +C ++VATDVA+RGLDI +
Sbjct: 438 KVGCEELSKNLDAMHYRCCLLHGDKSQYDRSSALADFKNGKCPVMVATDVASRGLDIRDV 497
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAG----NKGVAYTLVTDKD 142
+TVVNYD+A++ID H HRIGRTGR G GVAYTL+T+K+
Sbjct: 498 KTVVNYDVAKNIDIHVHRIGRTGRMGVDGFEPGVAYTLITNKE 540
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 6 GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
GVAYTL+T+K+ +FA LV N++ A Q V L+ +A
Sbjct: 530 GVAYTLITNKETQFAAQLVCNMDTAGQPVSAELLAIA 566
>gi|328771122|gb|EGF81162.1| hypothetical protein BATDEDRAFT_10391 [Batrachochytrium
dendrobatidis JAM81]
Length = 521
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 82/106 (77%), Gaps = 2/106 (1%)
Query: 36 PALMNLAMQLNAEELANSLTVKEYDVLL--LHGDMDQSERNSVITKFKRQECRILVATDV 93
P L+ ++ + +ELA++L+ + ++ LHGD+ Q++R+ V+ +FK + R+LV+TDV
Sbjct: 315 PVLVFVSRKAGVDELASNLSAAQIASVVGALHGDLMQAQRDQVLKEFKSGKSRVLVSTDV 374
Query: 94 AARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
A+RGLDI ++TV+NYD+++DID++ HRIGRTGRAG KG AYTL+T
Sbjct: 375 ASRGLDIKGVKTVINYDVSKDIDSYVHRIGRTGRAGEKGTAYTLIT 420
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG AYTL+T ++ FA LV+ +E NQ AL+NLAMQ
Sbjct: 408 RAGEKGTAYTLITMQEDRFASDLVQLMENGNQAPTEALVNLAMQ 451
>gi|328875962|gb|EGG24326.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 806
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/102 (52%), Positives = 75/102 (73%)
Query: 41 LAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDI 100
++ ++ E+L+ +L + +HGD DQ ER +I++FK ILVATDVAARGLDI
Sbjct: 583 VSTKVAVEQLSTNLLKFGFLADGIHGDKDQQERTQIISRFKSGTVPILVATDVAARGLDI 642
Query: 101 PHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
I+ VVN+D++RDID+HTHR+GRTGRAG +G A+TL+T KD
Sbjct: 643 SLIKNVVNFDVSRDIDSHTHRVGRTGRAGTQGTAHTLITPKD 684
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAM 43
RAG +G A+TL+T KD F+ LVR+LE ANQ VPP L+ +AM
Sbjct: 669 RAGTQGTAHTLITPKDTHFSADLVRHLEEANQNVPPELITVAM 711
>gi|389808857|ref|ZP_10204993.1| ATP-dependent RNA helicase DbpA [Rhodanobacter thiooxydans LCS2]
gi|388442440|gb|EIL98636.1| ATP-dependent RNA helicase DbpA [Rhodanobacter thiooxydans LCS2]
Length = 459
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 75/107 (70%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ M+ + + +A L + Y L LHGDM+Q +R+ V+ +F + C +LVATDVAAR
Sbjct: 244 ALVFCNMRRDVDAVAQELDRRGYSALALHGDMEQRDRDEVLVRFANRSCNVLVATDVAAR 303
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
GLDI + V++YD+A D DTHTHRIGRTGRAG G+A TL T +++
Sbjct: 304 GLDIAALPLVLSYDVAHDPDTHTHRIGRTGRAGETGLAITLCTPRER 350
>gi|192359134|ref|YP_001980830.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
gi|190685299|gb|ACE82977.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
Length = 469
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 70/96 (72%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
EELA+ L K+ L LHGDM+Q ER+ V+ +F + C +L+ATDVAARG+DI + V
Sbjct: 267 CEELADGLQAKKVAALALHGDMEQKERDRVLVRFANKSCAVLIATDVAARGIDIKDLDAV 326
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+NY+LARD + H HRIGRTGRAG +G+A +LV ++
Sbjct: 327 INYELARDSEVHVHRIGRTGRAGAEGLALSLVAPRE 362
>gi|18407327|ref|NP_566099.1| DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana]
gi|75318047|sp|O22907.2|RH24_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 24
gi|16323192|gb|AAL15330.1| At2g47330/T8I13.17 [Arabidopsis thaliana]
gi|20196880|gb|AAB63833.2| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|21700913|gb|AAM70580.1| At2g47330/T8I13.17 [Arabidopsis thaliana]
gi|330255734|gb|AEC10828.1| DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana]
Length = 760
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 83/132 (62%), Gaps = 2/132 (1%)
Query: 12 VTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQS 71
V D E L+ L G E L+ + + +E+ LT+ + V LHGD DQ+
Sbjct: 452 VIPSDAEKLPWLLEKLPGMIDEGD-VLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQA 510
Query: 72 ERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNK 131
R + KFK +L+ATDVAARGLDI ++TVVNYD+A+D+D H HRIGRTGRAG++
Sbjct: 511 SRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDR 570
Query: 132 -GVAYTLVTDKD 142
GVAYTLVT ++
Sbjct: 571 DGVAYTLVTQRE 582
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG++ GVAYTLVT ++ FAG LV +L A Q VPP L +LAM+
Sbjct: 566 RAGDRDGVAYTLVTQREARFAGELVNSLVAAGQNVPPELTDLAMK 610
>gi|421151522|ref|ZP_15611134.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa ATCC 14886]
gi|404527205|gb|EKA37378.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa ATCC 14886]
Length = 458
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Query: 35 PPALMNLAM-QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV 93
PP+ + + +ELA++L + L LHGD++Q ER+ V+T F + C +LVATDV
Sbjct: 242 PPSCVAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVATDV 301
Query: 94 AARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
AARGLDI + TV+N +LARD + H HRIGR+GRAG KG+A +LV +
Sbjct: 302 AARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAE 350
>gi|389799070|ref|ZP_10202074.1| ATP-dependent RNA helicase DbpA [Rhodanobacter sp. 116-2]
gi|388443695|gb|EIL99832.1| ATP-dependent RNA helicase DbpA [Rhodanobacter sp. 116-2]
Length = 459
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 74/107 (69%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ M+ + + +A L + Y L LHGDM+Q +R+ V+ +F + C +LVATDVAAR
Sbjct: 244 ALVFCNMRKDVDAVAQELDRRGYSALALHGDMEQRDRDEVLVRFANKSCNVLVATDVAAR 303
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
GLDI + V+ YD+A D DTHTHRIGRTGRAG G+A TL T +++
Sbjct: 304 GLDIAALPLVLCYDVAHDPDTHTHRIGRTGRAGETGLAITLCTPRER 350
>gi|352090141|ref|ZP_08954313.1| DEAD/DEAH box helicase domain protein [Rhodanobacter sp. 2APBS1]
gi|351677519|gb|EHA60667.1| DEAD/DEAH box helicase domain protein [Rhodanobacter sp. 2APBS1]
Length = 459
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 74/107 (69%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ M+ + + +A L + Y L LHGDM+Q +R+ V+ +F + C +LVATDVAAR
Sbjct: 244 ALVFCNMRRDVDAVAQELDRRGYSALALHGDMEQRDRDEVLVRFANKSCNVLVATDVAAR 303
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
GLDI + V+ YD+A D DTHTHRIGRTGRAG G+A TL T +++
Sbjct: 304 GLDIAALPLVLCYDVAHDPDTHTHRIGRTGRAGETGLAITLCTPRER 350
>gi|374619410|ref|ZP_09691944.1| DNA/RNA helicase, superfamily II [gamma proteobacterium HIMB55]
gi|374302637|gb|EHQ56821.1| DNA/RNA helicase, superfamily II [gamma proteobacterium HIMB55]
Length = 464
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
++A+ L + + + LHGD+DQ ER+ V+ +F C +LVA+DVAARGLDIP +
Sbjct: 256 QCSDVASFLCEHDIEAIALHGDLDQRERDQVLLQFANGSCPVLVASDVAARGLDIPSLEM 315
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN DL RD DT+ HRIGRTGRAG KG A++LVT D
Sbjct: 316 VVNVDLPRDADTYVHRIGRTGRAGEKGKAFSLVTPAD 352
>gi|218889195|ref|YP_002438059.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa LESB58]
gi|420137036|ref|ZP_14645038.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa CIG1]
gi|421157477|ref|ZP_15616845.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa ATCC 25324]
gi|451987568|ref|ZP_21935723.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa 18A]
gi|218769418|emb|CAW25178.1| RNA helicase DbpA [Pseudomonas aeruginosa LESB58]
gi|403250212|gb|EJY63666.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa CIG1]
gi|404550581|gb|EKA59319.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa ATCC 25324]
gi|451754718|emb|CCQ88246.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa 18A]
Length = 458
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 69/97 (71%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ELA++L + L LHGD++Q ER+ V+T F + C +LVATDVAARGLDI + T
Sbjct: 254 QCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVATDVAARGLDIAALET 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+N +LARD + H HRIGR+GRAG KG+A +LV +
Sbjct: 314 VINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAE 350
>gi|392981865|ref|YP_006480452.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa DK2]
gi|419755935|ref|ZP_14282287.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa
PADK2_CF510]
gi|384397597|gb|EIE44008.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa
PADK2_CF510]
gi|392317370|gb|AFM62750.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa DK2]
Length = 458
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 69/97 (71%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ELA++L + L LHGD++Q ER+ V+T F + C +LVATDVAARGLDI + T
Sbjct: 254 QCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVATDVAARGLDIAALET 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+N +LARD + H HRIGR+GRAG KG+A +LV +
Sbjct: 314 VINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAE 350
>gi|116054184|ref|YP_788628.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14]
gi|254243551|ref|ZP_04936873.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192]
gi|296386953|ref|ZP_06876452.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAb1]
gi|313111919|ref|ZP_07797709.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016]
gi|355646784|ref|ZP_09054619.1| hypothetical protein HMPREF1030_03705 [Pseudomonas sp. 2_1_26]
gi|386068635|ref|YP_005983939.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|416856302|ref|ZP_11911946.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa 138244]
gi|416874977|ref|ZP_11918470.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa 152504]
gi|421165322|ref|ZP_15623657.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa ATCC
700888]
gi|421172218|ref|ZP_15629994.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa CI27]
gi|115589405|gb|ABJ15420.1| RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14]
gi|126196929|gb|EAZ60992.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192]
gi|310884211|gb|EFQ42805.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016]
gi|334842177|gb|EGM20790.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa 138244]
gi|334842530|gb|EGM21136.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa 152504]
gi|348037194|dbj|BAK92554.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|354828323|gb|EHF12446.1| hypothetical protein HMPREF1030_03705 [Pseudomonas sp. 2_1_26]
gi|404538079|gb|EKA47636.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa CI27]
gi|404542181|gb|EKA51511.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa ATCC
700888]
gi|453045833|gb|EME93551.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PA21_ST175]
Length = 458
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 69/97 (71%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ELA++L + L LHGD++Q ER+ V+T F + C +LVATDVAARGLDI + T
Sbjct: 254 QCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVATDVAARGLDIAALET 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+N +LARD + H HRIGR+GRAG KG+A +LV +
Sbjct: 314 VINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAE 350
>gi|15595652|ref|NP_249146.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
gi|107099439|ref|ZP_01363357.1| hypothetical protein PaerPA_01000451 [Pseudomonas aeruginosa PACS2]
gi|254237315|ref|ZP_04930638.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719]
gi|386056522|ref|YP_005973044.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa M18]
gi|418584977|ref|ZP_13149034.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa MPAO1/P1]
gi|418591717|ref|ZP_13155608.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa MPAO1/P2]
gi|421178365|ref|ZP_15635979.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa E2]
gi|421515071|ref|ZP_15961757.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAO579]
gi|424943126|ref|ZP_18358889.1| RNA helicase DbpA [Pseudomonas aeruginosa NCMG1179]
gi|9946315|gb|AAG03844.1|AE004483_2 RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
gi|126169246|gb|EAZ54757.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719]
gi|346059572|dbj|GAA19455.1| RNA helicase DbpA [Pseudomonas aeruginosa NCMG1179]
gi|347302828|gb|AEO72942.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa M18]
gi|375045309|gb|EHS37895.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa MPAO1/P1]
gi|375049443|gb|EHS41939.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa MPAO1/P2]
gi|404348799|gb|EJZ75136.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAO579]
gi|404548419|gb|EKA57370.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa E2]
Length = 458
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 69/97 (71%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ELA++L + L LHGD++Q ER+ V+T F + C +LVATDVAARGLDI + T
Sbjct: 254 QCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVATDVAARGLDIAALET 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+N +LARD + H HRIGR+GRAG KG+A +LV +
Sbjct: 314 VINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAE 350
>gi|126668612|ref|ZP_01739565.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter sp.
ELB17]
gi|126626942|gb|EAZ97586.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter sp.
ELB17]
Length = 457
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 73/103 (70%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
L+ AM+ +ELA L+ + + L LHGD++Q +R+SV+ +F Q C++LVATDVAAR
Sbjct: 243 CLVFCAMKHQCDELAAELSQQGFSALALHGDLEQRDRDSVLVRFANQSCQVLVATDVAAR 302
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
GLDI + VVN + A D + HTHRIGRTGRAG +G+A TL +
Sbjct: 303 GLDIKSLPLVVNAEPAGDPEIHTHRIGRTGRAGEQGLAVTLCS 345
>gi|336315426|ref|ZP_08570337.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
gi|335880403|gb|EGM78291.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
Length = 458
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 84/131 (64%), Gaps = 4/131 (3%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ V +DK A + + GA P L+ M+ + +++ + L+ Y V+ LHGD+
Sbjct: 220 FIEVEAQDKITALKQILSWHGAK----PTLIFSNMRKDTQDICDELSDAGYSVMSLHGDL 275
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
+Q +R V+ +F Q C I+VATDVAARGLDI + V+NYDL+ D + H HR+GRTGRA
Sbjct: 276 EQRDRERVLMQFTNQSCLIMVATDVAARGLDISALPLVINYDLSNDPEVHVHRVGRTGRA 335
Query: 129 GNKGVAYTLVT 139
G++G+A TLVT
Sbjct: 336 GSEGLALTLVT 346
>gi|269104380|ref|ZP_06157076.1| ATP-dependent RNA helicase DbpA [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161020|gb|EEZ39517.1| ATP-dependent RNA helicase DbpA [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 437
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 71/96 (73%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+E+A++L + + L LHGD++Q ER+ + + + C ILVATDVAARGLDI + V
Sbjct: 230 AQEVADTLVDEGFSALALHGDLEQRERDRTLVRLANKSCSILVATDVAARGLDIDALDAV 289
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+NY LARD + H HRIGRTGRAG+KG+A +L +DK+
Sbjct: 290 INYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKE 325
>gi|348677782|gb|EGZ17599.1| hypothetical protein PHYSODRAFT_300617 [Phytophthora sojae]
Length = 841
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Query: 38 LMNLAMQLNAEELANSLT--VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAA 95
L+ + EELA +L L LHGD Q ER ++KFK ECR+LVATDVAA
Sbjct: 388 LIFAGSKAGCEELAKNLATAFPSAPALCLHGDKTQQERAEALSKFKHGECRVLVATDVAA 447
Query: 96 RGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAG----NKGVAYTLVT 139
RGLD+ ++ VVN+D+A++IDTH HRIGRTGR G G AYTLVT
Sbjct: 448 RGLDVKDVKNVVNFDVAKNIDTHVHRIGRTGRMGLEGFEPGTAYTLVT 495
>gi|389759423|ref|ZP_10191769.1| ATP-dependent RNA helicase DbpA [Rhodanobacter sp. 115]
gi|388430465|gb|EIL87631.1| ATP-dependent RNA helicase DbpA [Rhodanobacter sp. 115]
Length = 459
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 71/101 (70%)
Query: 43 MQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPH 102
M+ + + +A L + + L LHGDM+Q +R+ V+ +F C ILVATDVAARGLDI
Sbjct: 250 MRRDVDAVAQELDRRGFSALPLHGDMEQRDRDEVLVRFANHSCAILVATDVAARGLDIAA 309
Query: 103 IRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+ V++YD+A D DTHTHRIGRTGRAG G+A TL T +++
Sbjct: 310 LPLVLSYDIAHDPDTHTHRIGRTGRAGQAGMAITLCTPRER 350
>gi|389794564|ref|ZP_10197716.1| ATP-dependent RNA helicase DbpA [Rhodanobacter fulvus Jip2]
gi|388432370|gb|EIL89384.1| ATP-dependent RNA helicase DbpA [Rhodanobacter fulvus Jip2]
Length = 459
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 80/121 (66%), Gaps = 2/121 (1%)
Query: 23 LVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82
L + L GA+ E AL+ M+ + +A L + + L LHGDM+Q +R+ V+ +F
Sbjct: 232 LTQLLGGAHAEQ--ALVFCNMRREVDAVAQELDRRGFSALALHGDMEQRDRDEVLVRFAN 289
Query: 83 QECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
C +LVATDVAARGLDI + VV+YD+A D +THTHR+GRTGRAG G+A TL T ++
Sbjct: 290 HSCAVLVATDVAARGLDIVALPLVVSYDIAHDPETHTHRVGRTGRAGESGLAITLCTPRE 349
Query: 143 K 143
+
Sbjct: 350 R 350
>gi|389775826|ref|ZP_10193691.1| ATP-dependent RNA helicase DbpA [Rhodanobacter spathiphylli B39]
gi|388437067|gb|EIL93893.1| ATP-dependent RNA helicase DbpA [Rhodanobacter spathiphylli B39]
Length = 459
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 80/121 (66%), Gaps = 2/121 (1%)
Query: 23 LVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82
LV+ L G E AL+ M+ + + +A L + + L LHGDM+Q +R+ V+ +F
Sbjct: 232 LVQLLGGERSEQ--ALVFCNMRRDVDAVAQELDRRGFSALALHGDMEQRDRDEVLVRFAN 289
Query: 83 QECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
C +LVATDVAARGLDI + VV+YD+A D +THTHRIGRTGRAG G+A TL T ++
Sbjct: 290 HSCAVLVATDVAARGLDIVALPLVVSYDIAHDPETHTHRIGRTGRAGQVGLAITLCTPRE 349
Query: 143 K 143
+
Sbjct: 350 R 350
>gi|384245963|gb|EIE19455.1| DEAD-domain-containing protein, partial [Coccomyxa subellipsoidea
C-169]
Length = 561
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ ++ ++ AEE++ L +HGDMDQ R V+ FK + LVATDVAARG
Sbjct: 408 LVFVSTKVRAEEISGQLQAAGLKAAAIHGDMDQHTRMQVLHDFKAGKHHALVATDVAARG 467
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
LDI I+TVVN D A+DIDTH HR+GRTGRAG+K GVAYTLVT ++
Sbjct: 468 LDIKSIKTVVNIDAAKDIDTHVHRVGRTGRAGDKDGVAYTLVTPRE 513
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K GVAYTLVT ++ FAG LV +L ANQ+VP ALM+LA +
Sbjct: 497 RAGDKDGVAYTLVTPREARFAGELVNSLAAANQQVPKALMDLAAK 541
>gi|301101090|ref|XP_002899634.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262103942|gb|EEY61994.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 456
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 66/100 (66%), Gaps = 6/100 (6%)
Query: 46 NAEELANSLTV--KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
EELA +L V L LHGD Q ER +TKFK CR+LVATDVAARGLD+ +
Sbjct: 319 GCEELAKNLAVAFPAAPALCLHGDKTQQERAEALTKFKHGACRVLVATDVAARGLDVKDV 378
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAG----NKGVAYTLVT 139
+ VVN+D+A+ IDTH HRIGRTGR G G AYTLVT
Sbjct: 379 KNVVNFDVAKSIDTHVHRIGRTGRMGLEGFEPGTAYTLVT 418
>gi|358335026|dbj|GAA28925.2| probable ATP-dependent RNA helicase DDX46, partial [Clonorchis
sinensis]
Length = 746
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 81/131 (61%), Gaps = 2/131 (1%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ LV +D++F + V L G QE L+ + Q +A+EL L Y L LHG +
Sbjct: 580 HALVLTEDEKF--YKVLELLGIYQEAGSVLIFVEKQESADELMRVLLKYGYPCLSLHGGI 637
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
DQ +R+SV+T FKR R+L+AT VAARGLD+ + V+NYD + + HR GRTGRA
Sbjct: 638 DQYDRDSVMTDFKRGNIRLLIATSVAARGLDVSDLMVVINYDCPNHYEDYVHRCGRTGRA 697
Query: 129 GNKGVAYTLVT 139
GNKG AYT +T
Sbjct: 698 GNKGFAYTFLT 708
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNL 41
RAGNKG AYT +T + AG +VR + + Q+ P L+ +
Sbjct: 696 RAGNKGFAYTFLTPDQERNAGDIVRAFKQSGQKPPEDLLAM 736
>gi|152986227|ref|YP_001345953.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PA7]
gi|150961385|gb|ABR83410.1| DEAD/DEAH box heliCase domain/helicase conserved domain/dbpa rna
binding domain protein [Pseudomonas aeruginosa PA7]
Length = 458
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ELA++L L LHGD++Q ER+ V+T F + C +LVATDVAARGLDI + T
Sbjct: 254 QCQELADALKAHRISALALHGDLEQRERDQVLTVFANRSCTVLVATDVAARGLDIAALET 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+N +LARD + H HRIGR+GRAG KG+A +LV +
Sbjct: 314 VINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAE 350
>gi|357511395|ref|XP_003625986.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355501001|gb|AES82204.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 775
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 55/96 (57%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+ L + + V LHGD DQS R ++ KFK +L+ATDVAARGLDI I+TVV
Sbjct: 490 DEIEVQLGQRGFKVAALHGDKDQSSRMDILQKFKSGAYHVLIATDVAARGLDIKSIKTVV 549
Query: 108 NYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
N+D+A+D+D H HRIGRTGRAG+K GVAYTL+T K+
Sbjct: 550 NFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKE 585
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K GVAYTL+T K+ FAG LV +L A Q V LM+LAM+
Sbjct: 569 RAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSTELMDLAMK 613
>gi|383318188|ref|YP_005379030.1| DNA/RNA helicase [Frateuria aurantia DSM 6220]
gi|379045292|gb|AFC87348.1| DNA/RNA helicase, superfamily II [Frateuria aurantia DSM 6220]
Length = 458
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 71/97 (73%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+EE+A++L + L LHG+M+Q +R+ V+ +F + C ILVATDVAARGLDI +
Sbjct: 252 GSEEVADALIKAGFSALALHGEMEQRDRDEVLVRFANRSCAILVATDVAARGLDIDSLPL 311
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+++DLA D THTHRIGRTGRAG G+A +LVT ++
Sbjct: 312 VISHDLAHDPQTHTHRIGRTGRAGQHGLAISLVTSRE 348
>gi|90408198|ref|ZP_01216366.1| putative ATP-dependent RNA helicase DbpA [Psychromonas sp. CNPT3]
gi|90310728|gb|EAS38845.1| putative ATP-dependent RNA helicase DbpA [Psychromonas sp. CNPT3]
Length = 462
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 69/96 (71%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A L + + L LHGD+DQ +R+ + +F + C ILVATDVAARGLDI ++ V
Sbjct: 257 QEVAEELNNRGFSALALHGDLDQKDRDQALIRFSNRSCSILVATDVAARGLDIENLSAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
NY+LA D + H HRIGRTGRAG+KG+A++ + KD+
Sbjct: 317 NYNLAHDQEIHVHRIGRTGRAGSKGMAFSFYSAKDE 352
>gi|224064557|ref|XP_002301515.1| predicted protein [Populus trichocarpa]
gi|222843241|gb|EEE80788.1| predicted protein [Populus trichocarpa]
Length = 807
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 63/143 (44%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYD 60
RA V D E L+ L G E L+ + + +++ + L K +
Sbjct: 438 RANEDITQVVQVIPSDAEKLPWLIEKLPGMIDE-GDVLVFASKKATVDDIESQLAQKAFK 496
Query: 61 VLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTH 120
V LHGD DQ+ R ++ KFK +LVATDVAARGLDI I++VVN+D+AR++D H H
Sbjct: 497 VAALHGDKDQASRMEILQKFKSGVYHVLVATDVAARGLDIKSIKSVVNFDIAREMDVHVH 556
Query: 121 RIGRTGRAGNK-GVAYTLVTDKD 142
RIGRTGRAG+K G+AYTL+T K+
Sbjct: 557 RIGRTGRAGDKDGIAYTLITQKE 579
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K G+AYTL+T K+ FAG LV +L A Q V LM+LAM+
Sbjct: 563 RAGDKDGIAYTLITQKEARFAGELVNSLIAAGQNVSVELMDLAMK 607
>gi|363892772|ref|ZP_09319927.1| hypothetical protein HMPREF9630_02004 [Eubacteriaceae bacterium
CM2]
gi|402837161|ref|ZP_10885688.1| DEAD/DEAH box helicase [Eubacteriaceae bacterium OBRC8]
gi|361962765|gb|EHL15873.1| hypothetical protein HMPREF9630_02004 [Eubacteriaceae bacterium
CM2]
gi|402275576|gb|EJU24723.1| DEAD/DEAH box helicase [Eubacteriaceae bacterium OBRC8]
Length = 507
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 71/96 (73%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
+EL N L +++Y V +HGDM Q +R V+ KFK++ ILVATDVAARGLDI + V
Sbjct: 253 VDELINGLQLRDYKVEGIHGDMRQEKREKVLEKFKKRHINILVATDVAARGLDISGVTHV 312
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+N+DL ++I+++ HRIGRTGRAGN G+++T V K+
Sbjct: 313 INFDLPQEIESYVHRIGRTGRAGNTGISFTFVHPKE 348
>gi|363889902|ref|ZP_09317252.1| hypothetical protein HMPREF9628_01748 [Eubacteriaceae bacterium
CM5]
gi|363894857|ref|ZP_09321912.1| hypothetical protein HMPREF9629_02181 [Eubacteriaceae bacterium
ACC19a]
gi|361961266|gb|EHL14481.1| hypothetical protein HMPREF9629_02181 [Eubacteriaceae bacterium
ACC19a]
gi|361966184|gb|EHL19117.1| hypothetical protein HMPREF9628_01748 [Eubacteriaceae bacterium
CM5]
Length = 507
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 71/96 (73%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
+EL N L +++Y V +HGDM Q +R V+ KFK++ ILVATDVAARGLDI + V
Sbjct: 253 VDELINGLQLRDYKVEGIHGDMRQEKREKVLEKFKKRHINILVATDVAARGLDISGVTHV 312
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+N+DL ++I+++ HRIGRTGRAGN G+++T V K+
Sbjct: 313 INFDLPQEIESYVHRIGRTGRAGNTGISFTFVHPKE 348
>gi|302789710|ref|XP_002976623.1| hypothetical protein SELMODRAFT_151274 [Selaginella moellendorffii]
gi|300155661|gb|EFJ22292.1| hypothetical protein SELMODRAFT_151274 [Selaginella moellendorffii]
Length = 595
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 56/114 (49%), Positives = 70/114 (61%)
Query: 29 GANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRIL 88
GAN + P L+ + + A+ L + L + +HGD Q ER + F+ IL
Sbjct: 401 GANGQPPLMLVFVETKRGADALEDWLIRSGFPATTIHGDRTQPEREQALRCFRTGMTPIL 460
Query: 89 VATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VATDVAARGLDIPH+ V+NYDL DID + HRIGRTGRAGN G+A TDKD
Sbjct: 461 VATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGNSGLATAFFTDKD 514
>gi|356505639|ref|XP_003521597.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 24-like [Glycine
max]
Length = 782
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 53/96 (55%), Positives = 72/96 (75%), Gaps = 1/96 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+ + L + + V LHGD DQ+ R ++ KFK +L+ATDVAARGLDI I++VV
Sbjct: 496 DEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGLYHVLIATDVAARGLDIKSIKSVV 555
Query: 108 NYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
N+D+A+D+D H HRIGRTGRAG+K GVAYTL+T K+
Sbjct: 556 NFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITLKE 591
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K GVAYTL+T K+ FAG LV +L A Q V LM+LAM+
Sbjct: 575 RAGDKDGVAYTLITLKEARFAGELVNSLVAAGQNVSVELMDLAMK 619
>gi|302782918|ref|XP_002973232.1| hypothetical protein SELMODRAFT_267628 [Selaginella moellendorffii]
gi|300158985|gb|EFJ25606.1| hypothetical protein SELMODRAFT_267628 [Selaginella moellendorffii]
Length = 597
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/114 (49%), Positives = 70/114 (61%)
Query: 29 GANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRIL 88
GAN + P L+ + + A+ L + L + +HGD Q ER + F+ IL
Sbjct: 403 GANGQPPLMLVFVETKRGADALEDWLIRSGFPATTIHGDRTQPEREQALRCFRTGMTPIL 462
Query: 89 VATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VATDVAARGLDIPH+ V+NYDL DID + HRIGRTGRAGN G+A TDKD
Sbjct: 463 VATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGNSGLATAFFTDKD 516
>gi|56460521|ref|YP_155802.1| ATP-dependent RNA helicase DbpA [Idiomarina loihiensis L2TR]
gi|56179531|gb|AAV82253.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
Length = 474
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 84/128 (65%), Gaps = 3/128 (2%)
Query: 16 DKEFAGHLVRNLEGANQEVPPALMNLAMQLN-AEELANSLTVKEYDVLLLHGDMDQSERN 74
+ E + LV NL G +Q P + N +++ N+L ++ VL LHG+++Q +R+
Sbjct: 242 NNEDSAQLVMNLLGDHQ--PENCLVFCNTKNEVKDIFNTLRANKFSVLALHGELEQKDRD 299
Query: 75 SVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVA 134
I +F R+L+ATDVA+RGLDI + V++ ++A D+DTHTHRIGRTGRAG +GVA
Sbjct: 300 QAIIQFSNGSARVLIATDVASRGLDIAELDLVISVNMAHDLDTHTHRIGRTGRAGKEGVA 359
Query: 135 YTLVTDKD 142
TL+ +KD
Sbjct: 360 ITLIAEKD 367
>gi|189426069|ref|YP_001953246.1| ATP-dependent RNA helicase DbpA [Geobacter lovleyi SZ]
gi|189422328|gb|ACD96726.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
Length = 465
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 74/100 (74%)
Query: 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
+L+ +ELA+ L + + L +HGD++Q ER+ V+ +F + +LVATDVAARGLDI +
Sbjct: 252 KLDCQELADDLKERGFAALAIHGDLEQRERDQVLVRFSNKSASVLVATDVAARGLDIKEL 311
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
V+N++L+R+ + HTHRIGRTGRAG +G+A +LV+ +D
Sbjct: 312 AAVINFELSRNPEVHTHRIGRTGRAGEQGLAISLVSRRDS 351
>gi|356572801|ref|XP_003554554.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 24-like [Glycine
max]
Length = 768
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 53/96 (55%), Positives = 72/96 (75%), Gaps = 1/96 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+ + L + + V LHGD DQ+ R ++ KFK +L+ATDVAARGLDI I++VV
Sbjct: 485 DEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGLYHVLIATDVAARGLDIKSIKSVV 544
Query: 108 NYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
N+D+A+D+D H HRIGRTGRAG+K GVAYTL+T K+
Sbjct: 545 NFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITLKE 580
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K GVAYTL+T K+ FAG LV +L A Q V LM+LAM+
Sbjct: 564 RAGDKDGVAYTLITLKEARFAGELVNSLVAAGQNVSVELMDLAMK 608
>gi|222624792|gb|EEE58924.1| hypothetical protein OsJ_10575 [Oryza sativa Japonica Group]
Length = 696
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ A + +E+ + L + + + LHGD DQ+ R + KFK +LVATDVAARG
Sbjct: 394 LVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAARG 453
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
LDI I+TVVN+D+A+++D H HRIGRTGRAG+K G AYTL+T K+
Sbjct: 454 LDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKE 499
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K G AYTL+T K+ FAG LV L A Q+VP LM+LAM+
Sbjct: 483 RAGDKDGTAYTLITQKEVRFAGELVHCLIAAGQDVPNELMDLAMK 527
>gi|255548421|ref|XP_002515267.1| hypothetical protein RCOM_1346600 [Ricinus communis]
gi|223545747|gb|EEF47251.1| hypothetical protein RCOM_1346600 [Ricinus communis]
Length = 791
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 53/96 (55%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+ + L K + V LHGD DQ+ R ++ KFK +L+ATDVAARGLDI +++VV
Sbjct: 483 DEIESQLAQKGFKVAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSLKSVV 542
Query: 108 NYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
N+D+ARD+D H HRIGRTGRAG+K G AYTL+T K+
Sbjct: 543 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLITQKE 578
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K G AYTL+T K+ FAG LV +L A Q V LM+LAM+
Sbjct: 562 RAGDKDGTAYTLITQKEARFAGELVNSLIAAGQNVSGELMDLAMK 606
>gi|372266540|ref|ZP_09502588.1| ATP-dependent RNA helicase DbpA [Alteromonas sp. S89]
Length = 453
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 72/113 (63%)
Query: 30 ANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILV 89
A + AL+ + +E AN+L + L LHGDM+Q ER+ +T F ILV
Sbjct: 231 ATHDASSALIFCNTKKETDEAANALKRAGFAALALHGDMEQKERDRTLTLFANGSASILV 290
Query: 90 ATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
ATDVAARGLDI + VVNY L+RD + H HR+GRTGRAG KGVA +LV+ K+
Sbjct: 291 ATDVAARGLDIEELPIVVNYHLSRDPEVHVHRVGRTGRAGQKGVAISLVSKKE 343
>gi|347540439|ref|YP_004847864.1| ATP-dependent RNA helicase [Pseudogulbenkiania sp. NH8B]
gi|345643617|dbj|BAK77450.1| ATP-dependent RNA helicase [Pseudogulbenkiania sp. NH8B]
Length = 438
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 71/106 (66%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A ++ +EELA+ L+ + Y LHGDM Q+ RN + +R RILVATDVAAR
Sbjct: 247 AVIFTATKIGSEELADKLSDQGYAAACLHGDMPQNWRNRTLNDLRRGRVRILVATDVAAR 306
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVNYDL + + + HRIGRTGRAG GVA TL K+
Sbjct: 307 GIDVPTITHVVNYDLPKQAEDYVHRIGRTGRAGRDGVAITLAESKE 352
>gi|224824946|ref|ZP_03698052.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224602617|gb|EEG08794.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 438
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 71/106 (66%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A ++ +EELA+ L+ + Y LHGDM Q+ RN + +R RILVATDVAAR
Sbjct: 247 AVIFTATKIGSEELADKLSDQGYAAACLHGDMPQNWRNRTLNDLRRGRVRILVATDVAAR 306
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVNYDL + + + HRIGRTGRAG GVA TL K+
Sbjct: 307 GIDVPTITHVVNYDLPKQAEDYVHRIGRTGRAGRDGVAITLAESKE 352
>gi|145349289|ref|XP_001419069.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579300|gb|ABO97362.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 478
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 81/132 (61%), Gaps = 2/132 (1%)
Query: 12 VTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQS 71
V + D A L NL A E A++ + + + EEL N L + + LHGD+DQ+
Sbjct: 283 VFEDDARRAAWLFENLGDAVDE-GQAIVFVNHKSSVEELVNELATRGIKAVALHGDLDQA 341
Query: 72 ERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN- 130
+R + FK + +LVATDVAARGLD+ I+TVVN+ ARD+ TH HRIGRTGRAG
Sbjct: 342 QRQFAMKAFKSEHAHVLVATDVAARGLDVEAIKTVVNFHPARDMSTHVHRIGRTGRAGAL 401
Query: 131 KGVAYTLVTDKD 142
G AYTL T +D
Sbjct: 402 DGRAYTLFTARD 413
>gi|326531018|dbj|BAK04860.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531744|dbj|BAJ97876.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 415
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+ N L + V LHGD DQ+ R + KFK +LVATDVAARGLDI I+TVV
Sbjct: 299 DEVENQLNQHGFKVAALHGDKDQASRMETLQKFKSGIYHVLVATDVAARGLDIKSIKTVV 358
Query: 108 NYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKDK--DGEL 147
N+D+A+++D H HRIGRTGRAG+K G AYTL+T K+ GEL
Sbjct: 359 NFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKESRFAGEL 401
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVP 35
RAG+K G AYTL+T K+ FAG LV +L A Q+VP
Sbjct: 378 RAGDKDGTAYTLITQKESRFAGELVHSLIAAGQDVP 413
>gi|357112553|ref|XP_003558073.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 24-like
[Brachypodium distachyon]
Length = 767
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 55/106 (51%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ A + +E+ N L + + V LHGD DQ+ R + FK +LVATDVAARG
Sbjct: 463 LVFAAKKARVDEIENQLNQRGFKVAALHGDKDQASRMETLQNFKSGTYHVLVATDVAARG 522
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
LDI I+TVVN+D+A+++D H HRIGRTGRAG+K G AYTL+T K+
Sbjct: 523 LDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKE 568
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K G AYTL+T K+ FAG LV +L A Q+VP LM+LAM+
Sbjct: 552 RAGDKDGTAYTLITQKETRFAGELVHSLIAAGQDVPNELMDLAMK 596
>gi|159901480|ref|YP_001547727.1| DEAD/DEAH box helicase [Herpetosiphon aurantiacus DSM 785]
gi|159894519|gb|ABX07599.1| DEAD/DEAH box helicase domain protein [Herpetosiphon aurantiacus
DSM 785]
Length = 584
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 68/96 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL L + Y LLHGD+ Q+ R+ V+ +F+ ++ ILVATDVAARGLDI H+ V+
Sbjct: 254 DELGEKLLARGYGAELLHGDLSQAMRDRVMKRFREEQVEILVATDVAARGLDIEHVSHVI 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
NYD+ D + + HRIGRTGRAG GVA TLVT +++
Sbjct: 314 NYDIPLDPEAYVHRIGRTGRAGRSGVAVTLVTPRER 349
>gi|68037499|gb|AAY84883.1| DEAD-box ATPase-RNA-helicase [Triticum aestivum]
Length = 381
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
++L+ +L+ ++Y +HGD Q+ER+SV+++F+ C ILVATDVAARGLD+ IR V
Sbjct: 150 CDQLSRNLS-RQYGASAIHGDKSQAERDSVLSEFRTGRCPILVATDVAARGLDVKDIRVV 208
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VNYD ++ + HRIGRTGRAG G+AYT D+D
Sbjct: 209 VNYDFPTGVEDYVHRIGRTGRAGATGIAYTFFCDQD 244
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPAL 38
RAG G+AYT D+D ++A LV+ LEGANQ V P L
Sbjct: 229 RAGATGIAYTFFCDQDSKYASDLVKILEGANQNVSPEL 266
>gi|335419643|ref|ZP_08550693.1| ATP-dependent RNA helicase DbpA [Salinisphaera shabanensis E1L3A]
gi|334896306|gb|EGM34458.1| ATP-dependent RNA helicase DbpA [Salinisphaera shabanensis E1L3A]
Length = 462
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 62/83 (74%)
Query: 62 LLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHR 121
L LHGD +Q ER+ V+ +F Q C +LVATDVAARGLDI + VV+ DLARDIDTHTHR
Sbjct: 273 LALHGDREQRERDEVLLRFANQSCAVLVATDVAARGLDIASLPLVVSVDLARDIDTHTHR 332
Query: 122 IGRTGRAGNKGVAYTLVTDKDKD 144
IGRTGRAG G A + T +++D
Sbjct: 333 IGRTGRAGEAGRAVSFCTPRERD 355
>gi|427401749|ref|ZP_18892821.1| hypothetical protein HMPREF9710_02417 [Massilia timonae CCUG 45783]
gi|425719461|gb|EKU82394.1| hypothetical protein HMPREF9710_02417 [Massilia timonae CCUG 45783]
Length = 469
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 69/95 (72%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
ELA+SL + + L L+G+++Q ER+ ++ F + C +LVATDVAARGLDI + TV+N
Sbjct: 257 ELADSLQAQGFSALALYGELEQQERDEILVLFSNRSCSVLVATDVAARGLDIADLDTVIN 316
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
D++RD + H HR+GRTGRAG G+A+TLV +K
Sbjct: 317 VDVSRDPEVHVHRVGRTGRAGASGMAHTLVAPNEK 351
>gi|326524209|dbj|BAJ97115.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 764
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/103 (55%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+ N L + V LHGD DQ+ R + KFK +LVATDVAARGLDI I+TVV
Sbjct: 473 DEVENQLNQHGFKVAALHGDKDQASRMETLQKFKSGIYHVLVATDVAARGLDIKSIKTVV 532
Query: 108 NYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKDKD--GEL 147
N+D+A+++D H HRIGRTGRAG+K G AYTL+T K+ GEL
Sbjct: 533 NFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKESRFAGEL 575
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K G AYTL+T K+ FAG LV +L A Q+VP LM+LAM+
Sbjct: 552 RAGDKDGTAYTLITQKESRFAGELVHSLIAAGQDVPNELMDLAMK 596
>gi|71281141|ref|YP_268282.1| ATP-dependent RNA helicase DbpA [Colwellia psychrerythraea 34H]
gi|71146881|gb|AAZ27354.1| ATP-dependent RNA helicase DbpA [Colwellia psychrerythraea 34H]
Length = 468
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 70/95 (73%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+++A++L + VL LHGD++Q +R+ + +F + ILVATDVAARGLDI + V+
Sbjct: 263 QQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASILVATDVAARGLDIDSLDLVI 322
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NY +ARD + H HRIGRTGRAG+ G+AY+L +DK+
Sbjct: 323 NYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKE 357
>gi|296107675|ref|YP_003619376.1| ATP-independent RNA helicase DbpA [Legionella pneumophila 2300/99
Alcoy]
gi|295649577|gb|ADG25424.1| ATP-independent RNA helicase DbpA [Legionella pneumophila 2300/99
Alcoy]
Length = 435
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 67/94 (71%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
E+ + L + + + L+GDM+Q ER+ + +F Q C ILVATDVAARGLDI + V+N
Sbjct: 232 EVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSILVATDVAARGLDIKELSAVIN 291
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+DLA D D H HRIGRTGRAG+KG+A ++VT D
Sbjct: 292 FDLAFDHDIHIHRIGRTGRAGSKGIALSIVTPAD 325
>gi|218192669|gb|EEC75096.1| hypothetical protein OsI_11255 [Oryza sativa Indica Group]
Length = 1023
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 54/106 (50%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ A + +E+ + L + + + LHGD DQ+ R + KFK +LVATDVAARG
Sbjct: 480 LVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAARG 539
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
LDI I+TVVN+D+A+++D H HRIGRTGRAG+K G AYTL+T K+
Sbjct: 540 LDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKE 585
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K G AYTL+T K+ FAG LV L A Q+VP LM+LAM+
Sbjct: 569 RAGDKDGTAYTLITQKEVRFAGELVHCLIAAGQDVPNELMDLAMK 613
>gi|387127094|ref|YP_006295699.1| ATP-dependent RNA helicase DbpA [Methylophaga sp. JAM1]
gi|386274156|gb|AFI84054.1| ATP-dependent RNA helicase DbpA [Methylophaga sp. JAM1]
Length = 460
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 72/106 (67%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ ++ +E+A L K+ D +HGD++Q ER+ V+ +F Q C +LVATDVAAR
Sbjct: 245 AIVFCHTKIQCDEVAEMLRNKKIDAQPIHGDLEQRERDQVLVRFANQSCPVLVATDVAAR 304
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
GLDI I V+NY+L RD + + HRIGRTGRAG G+A +LV + +
Sbjct: 305 GLDIKAIEMVINYELPRDPEVYIHRIGRTGRAGESGLAMSLVAEAE 350
>gi|348527894|ref|XP_003451454.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
[Oreochromis niloticus]
Length = 1038
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ LV D+DK+F L + G QE ++ + Q +A+ L L Y + LHG +
Sbjct: 585 HVLVIDEDKKFLKLL--EILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGI 642
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
DQ +R+S+I FK CR++VAT VAARGLD+ + VVNY+ + + HR GRTGRA
Sbjct: 643 DQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVHRAGRTGRA 702
Query: 129 GNKGVAYTLVTD 140
GNKG AYT +T+
Sbjct: 703 GNKGYAYTFITE 714
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK 57
RAGNKG AYT +T+ +AG +++ LE + VPP L L ++ A T+K
Sbjct: 701 RAGNKGYAYTFITEDQVRYAGDIIKALELSGSPVPPELEQLWASFKDQQKAEGKTIK 757
>gi|225437591|ref|XP_002277419.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 24 [Vitis vinifera]
gi|297743992|emb|CBI36962.3| unnamed protein product [Vitis vinifera]
Length = 771
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 1/96 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+ + L K + LHGD DQ+ R ++ KFK +L+ATDVAARGLDI I++VV
Sbjct: 485 DEIESQLGQKGLKIAALHGDKDQASRMDILQKFKSGIYHVLIATDVAARGLDIKSIKSVV 544
Query: 108 NYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
N+D+ARD+D H HRIGRTGRAG+K G AYTL+T K+
Sbjct: 545 NFDIARDMDAHVHRIGRTGRAGDKDGTAYTLITHKE 580
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K G AYTL+T K+ FAG LV +L A Q VP LM+LAM+
Sbjct: 564 RAGDKDGTAYTLITHKEARFAGELVGSLIAAGQNVPMELMDLAMK 608
>gi|147821303|emb|CAN74586.1| hypothetical protein VITISV_041989 [Vitis vinifera]
Length = 771
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 1/96 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+ + L K + LHGD DQ+ R ++ KFK +L+ATDVAARGLDI I++VV
Sbjct: 485 DEIESQLGQKGLKIAALHGDKDQASRMDILQKFKSGIYHVLIATDVAARGLDIKSIKSVV 544
Query: 108 NYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
N+D+ARD+D H HRIGRTGRAG+K G AYTL+T K+
Sbjct: 545 NFDIARDMDAHVHRIGRTGRAGDKDGTAYTLITHKE 580
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K G AYTL+T K+ FAG LV +L A Q VP LM+LAM+
Sbjct: 564 RAGDKDGTAYTLITHKEARFAGELVGSLIAAGQNVPMELMDLAMK 608
>gi|115452607|ref|NP_001049904.1| Os03g0308500 [Oryza sativa Japonica Group]
gi|122247124|sp|Q10MH8.1|RH24_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 24
gi|108707754|gb|ABF95549.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|113548375|dbj|BAF11818.1| Os03g0308500 [Oryza sativa Japonica Group]
gi|215737377|dbj|BAG96306.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 770
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 54/106 (50%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ A + +E+ + L + + + LHGD DQ+ R + KFK +LVATDVAARG
Sbjct: 468 LVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAARG 527
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
LDI I+TVVN+D+A+++D H HRIGRTGRAG+K G AYTL+T K+
Sbjct: 528 LDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKE 573
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K G AYTL+T K+ FAG LV L A Q+VP LM+LAM+
Sbjct: 557 RAGDKDGTAYTLITQKEVRFAGELVHCLIAAGQDVPNELMDLAMK 601
>gi|90409951|ref|ZP_01217968.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
3TCK]
gi|90329304|gb|EAS45561.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
3TCK]
Length = 462
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 70/96 (72%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+E+++ L + + LHGD++Q ER+ + +F + +LVATDVAARGLDI + V
Sbjct: 256 AQEVSDDLVDYGFSSIALHGDLEQRERDQALVRFANKSTSVLVATDVAARGLDIDSLDAV 315
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+NY LARD + H HRIGRTGRAG+KGVA +L++DK+
Sbjct: 316 INYHLARDTEVHVHRIGRTGRAGSKGVACSLISDKE 351
>gi|54297986|ref|YP_124355.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila str. Paris]
gi|53751771|emb|CAH13194.1| hypothetical protein lpp2042 [Legionella pneumophila str. Paris]
Length = 468
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/94 (53%), Positives = 67/94 (71%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
E+ + L + + + L+GDM+Q ER+ + +F Q C ILVATDVAARGLDI + V+N
Sbjct: 265 EVTDQLINEGFSAIALNGDMEQVERDLAVLRFANQSCSILVATDVAARGLDIKELSAVIN 324
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+DLA D D H HRIGRTGRAG+KG+A ++VT D
Sbjct: 325 FDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPAD 358
>gi|114567412|ref|YP_754566.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114338347|gb|ABI69195.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 530
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 74/107 (69%)
Query: 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT 91
Q+ P +L+ + NA+ELA LT + Y+ LHGDM Q ER+ V+ F++ +ILVAT
Sbjct: 239 QQPPISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKILVAT 298
Query: 92 DVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
D+AARGLDI + V N+D+ D+D++ HR+GRTGRAG G+A TLV
Sbjct: 299 DLAARGLDIELVTHVFNFDIPEDLDSYIHRVGRTGRAGRSGIAITLV 345
>gi|399544541|ref|YP_006557849.1| ATP-independent RNA helicase dbpA [Marinobacter sp. BSs20148]
gi|399159873|gb|AFP30436.1| ATP-independent RNA helicase dbpA [Marinobacter sp. BSs20148]
Length = 457
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/102 (51%), Positives = 73/102 (71%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ AM+ +ELA L+ + + L LHGD++Q +R+SV+ +F Q C++LVATDVAARG
Sbjct: 244 LVFCAMKHQCDELAAELSQQGFSALALHGDLEQRDRDSVLVRFANQSCQVLVATDVAARG 303
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
LDI + VVN + A D + HTHRIGRTGRAG +G+A TL +
Sbjct: 304 LDIKSLPLVVNAEPAGDPEIHTHRIGRTGRAGEQGLAVTLCS 345
>gi|452821200|gb|EME28233.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 1145
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 69/102 (67%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + Q NA+ + N L + Y + LHG +DQ++R+S I FK +ILVAT VAARG
Sbjct: 684 LVFVDRQENADRIFNDLILAGYRCMSLHGGLDQADRDSTIADFKNGLVKILVATSVAARG 743
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
LD+ H+R V+NYD+ + + HR+GRTGRAGN G AYT +T
Sbjct: 744 LDVKHLRLVINYDVPNHYEDYVHRVGRTGRAGNPGTAYTFIT 785
>gi|317494076|ref|ZP_07952492.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917849|gb|EFV39192.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 459
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 70/97 (72%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +++ ++L+ ++ VL LHGD++Q ER+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 253 DCQDVYDALSGQDISVLALHGDLEQRERDQVLVRFSNRSCRVLVATDVAARGLDIKELEM 312
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVNY+L+ D + H HRIGRT RAG KG+A + V +
Sbjct: 313 VVNYELSFDPEVHVHRIGRTARAGQKGLAVSFVAPSE 349
>gi|242041163|ref|XP_002467976.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
gi|241921830|gb|EER94974.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
Length = 766
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 52/96 (54%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+ L + + + LHGD DQ+ R + KFK +LVATDVAARGLDI I+TVV
Sbjct: 478 DEIEKELNQRGFRIAALHGDKDQASRMETLQKFKSGTYHVLVATDVAARGLDIKSIKTVV 537
Query: 108 NYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
N+D+A+++D H HRIGRTGRAG+K G AYTL+T K+
Sbjct: 538 NFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKE 573
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K G AYTL+T K+ FAG LV +L A Q+VP LM+LAM+
Sbjct: 557 RAGDKDGTAYTLITQKEARFAGELVHSLIAAGQDVPNELMDLAMK 601
>gi|148359632|ref|YP_001250839.1| ATP dependent RNA helicase DbpA [Legionella pneumophila str. Corby]
gi|148281405|gb|ABQ55493.1| ATP dependent RNA helicase DbpA [Legionella pneumophila str. Corby]
Length = 468
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/94 (53%), Positives = 67/94 (71%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
E+ + L + + + L+GDM+Q ER+ + +F Q C ILVATDVAARGLDI + V+N
Sbjct: 265 EVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSILVATDVAARGLDIKELSAVIN 324
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+DLA D D H HRIGRTGRAG+KG+A ++VT D
Sbjct: 325 FDLAFDHDIHIHRIGRTGRAGSKGIALSIVTPAD 358
>gi|383937056|ref|ZP_09990469.1| ATP-independent RNA helicase DbpA [Rheinheimera nanhaiensis E407-8]
gi|383701847|dbj|GAB60560.1| ATP-independent RNA helicase DbpA [Rheinheimera nanhaiensis E407-8]
Length = 459
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 65/95 (68%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+++A++L + VL LHGDM+Q +R+ + +F ILVATDVAARGLDI + V
Sbjct: 257 QDVADALADAGFSVLALHGDMEQKDRDQTLVQFANGSACILVATDVAARGLDISSVDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NY LA D DTHTHRIGRTGRAG G+A +L T D
Sbjct: 317 NYQLAHDADTHTHRIGRTGRAGQTGIALSLFTASD 351
>gi|403744078|ref|ZP_10953523.1| DEAD/DEAH box helicase domain-containing protein [Alicyclobacillus
hesperidum URH17-3-68]
gi|403122295|gb|EJY56519.1| DEAD/DEAH box helicase domain-containing protein [Alicyclobacillus
hesperidum URH17-3-68]
Length = 473
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 70/97 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL N+L ++ YD LHGD+ Q +R+ V+ KF+ + +LVATDVAARGLD+ + V
Sbjct: 256 DELTNALQMRGYDADGLHGDLSQKQRDMVMNKFREGKLEVLVATDVAARGLDVSGVTHVY 315
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +DID++ HRIGRTGRAG G+A T VT ++ D
Sbjct: 316 NFDIPQDIDSYVHRIGRTGRAGKSGIASTFVTPREVD 352
>gi|52842336|ref|YP_096135.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|378778024|ref|YP_005186462.1| ATP dependent RNA helicase DbpA [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52629447|gb|AAU28188.1| ATP dependent RNA helicase DbpA [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364508839|gb|AEW52363.1| ATP dependent RNA helicase DbpA [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 468
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/94 (53%), Positives = 67/94 (71%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
E+ + L + + + L+GDM+Q ER+ + +F Q C ILVATDVAARGLDI + V+N
Sbjct: 265 EVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSILVATDVAARGLDIKELSAVIN 324
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+DLA D D H HRIGRTGRAG+KG+A ++VT D
Sbjct: 325 FDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPAD 358
>gi|226494636|ref|NP_001147596.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
gi|195612416|gb|ACG28038.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
Length = 768
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 52/96 (54%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+ L + + + LHGD DQ+ R + KFK +LVATDVAARGLDI I+TVV
Sbjct: 478 DEIERELNQRGFRIAALHGDKDQASRMETLQKFKSGTYHVLVATDVAARGLDIKSIKTVV 537
Query: 108 NYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
N+D+A+++D H HRIGRTGRAG+K G AYTL+T K+
Sbjct: 538 NFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKE 573
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K G AYTL+T K+ FAG LV++L A Q+VP LM+LAM+
Sbjct: 557 RAGDKDGTAYTLITQKEARFAGELVQSLIAAGQDVPNELMDLAMK 601
>gi|307610952|emb|CBX00571.1| hypothetical protein LPW_22891 [Legionella pneumophila 130b]
Length = 468
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/94 (53%), Positives = 67/94 (71%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
E+ + L + + + L+GDM+Q ER+ + +F Q C ILVATDVAARGLDI + V+N
Sbjct: 265 EVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSILVATDVAARGLDIKELSAVIN 324
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+DLA D D H HRIGRTGRAG+KG+A ++VT D
Sbjct: 325 FDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPAD 358
>gi|399912278|ref|ZP_10780592.1| ATP-dependent RNA helicase DbpA [Halomonas sp. KM-1]
Length = 480
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 67/97 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
A+ELA++L + L LHGD++Q +R+ ++ F ILVATDVAARGLDI +
Sbjct: 273 EAQELADALCEAGFSALALHGDLEQRDRDRILVLFANHSVSILVATDVAARGLDIAALDA 332
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V NY +ARD++ H HR+GRTGRAG G+A TLV++ +
Sbjct: 333 VFNYQIARDLEVHVHRVGRTGRAGGSGIACTLVSESE 369
>gi|312074866|ref|XP_003140162.1| ATP-dependent RNA helicase An3 [Loa loa]
gi|307764673|gb|EFO23907.1| ATP-dependent RNA helicase An3 [Loa loa]
Length = 603
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/108 (47%), Positives = 74/108 (68%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ + + A +LA L Y+V+ +HGD+ Q ER + F+ + ILVAT VAAR
Sbjct: 317 ALVFVETKRGANDLAWYLQRNNYNVMPIHGDLKQYERERHLEMFRSGQTNILVATAVAAR 376
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
GLDIP+++ V+N+DL DID + HRIGRTGRAGN G+A + TD++++
Sbjct: 377 GLDIPNVKHVINFDLPTDIDEYVHRIGRTGRAGNIGLATSFFTDRNRN 424
>gi|237748776|ref|ZP_04579256.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
gi|229380138|gb|EEO30229.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
Length = 465
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 72/106 (67%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ A + +A+ +A+ L + + LHGDM Q RN +TK +R + +ILVATDVAAR
Sbjct: 271 ALVFTATKRDADIVADRLAIAGFSAAALHGDMPQGARNRTLTKLRRGQVKILVATDVAAR 330
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+DIP+I VVNYDL + + + HRIGRTGRAG G+A +LV D
Sbjct: 331 GIDIPNITHVVNYDLPKFPEDYVHRIGRTGRAGRHGLAISLVNHND 376
>gi|218187595|gb|EEC70022.1| hypothetical protein OsI_00586 [Oryza sativa Indica Group]
Length = 754
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 1/95 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++LA +L ++Y +HGD Q+ER+SV+++F+ C ILVATDVAARGLDI IR VV
Sbjct: 486 DQLARNLA-RQYGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKDIRVVV 544
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD ++ + HRIGRTGRAG GVAYT D+D
Sbjct: 545 NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQD 579
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNL 41
RAG GVAYT D+D ++A LV+ LEGANQ V L ++
Sbjct: 564 RAGATGVAYTFFCDQDSKYASDLVKILEGANQSVSQQLRDM 604
>gi|78776342|ref|YP_392657.1| ATP-dependent RNA helicase DbpA [Sulfurimonas denitrificans DSM
1251]
gi|78496882|gb|ABB43422.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
1251]
Length = 457
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 69/96 (71%)
Query: 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
++ +E+A L + D L +HGD++Q +RN V+ +F + C +LVATDVAARGLDI +
Sbjct: 253 KVEVDEIAKRLQESKVDALAIHGDLEQYDRNDVLVQFANKSCPVLVATDVAARGLDIKEL 312
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
V+NYDL ++T+THRIGRT RAG +G+A+TL +
Sbjct: 313 SMVINYDLPHSLETYTHRIGRTARAGAEGLAFTLYS 348
>gi|414866472|tpg|DAA45029.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 766
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 55/103 (53%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+ L + + + LHGD DQ+ R + KFK +LVATDVAARGLDI I+TVV
Sbjct: 478 DEIEKELNQRGFRIAALHGDKDQASRMETLQKFKSGTFHVLVATDVAARGLDIKSIKTVV 537
Query: 108 NYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKDKD--GEL 147
N+D+A+++D H HRIGRTGRAG+K G AYTL+T K+ GEL
Sbjct: 538 NFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEAHFAGEL 580
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K G AYTL+T K+ FAG LV +L A Q+VP LM+LAM+
Sbjct: 557 RAGDKDGTAYTLITQKEAHFAGELVHSLIAAGQDVPNELMDLAMK 601
>gi|118594179|ref|ZP_01551526.1| putative ATP-dependent RNA helicase protein [Methylophilales
bacterium HTCC2181]
gi|118439957|gb|EAV46584.1| putative ATP-dependent RNA helicase protein [Methylophilales
bacterium HTCC2181]
Length = 427
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 75/114 (65%)
Query: 31 NQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVA 90
N EV A++ A + A++L++ L + LHGDM Q R I +FKR E +ILVA
Sbjct: 240 NDEVTQAIIFTATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNETKILVA 299
Query: 91 TDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
TD+A+RG+D+ +I V NYD+ R + + HRIGRTGRA NKG+A +LV+ D++
Sbjct: 300 TDLASRGIDVKNISHVFNYDMPRFAEDYIHRIGRTGRANNKGIAISLVSPTDRE 353
>gi|115434786|ref|NP_001042151.1| Os01g0172200 [Oryza sativa Japonica Group]
gi|55296347|dbj|BAD68263.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
gi|113531682|dbj|BAF04065.1| Os01g0172200 [Oryza sativa Japonica Group]
gi|215713416|dbj|BAG94553.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 759
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 1/95 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++LA +L ++Y +HGD Q+ER+SV+++F+ C ILVATDVAARGLDI IR VV
Sbjct: 490 DQLARNLA-RQYGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKDIRVVV 548
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD ++ + HRIGRTGRAG GVAYT D+D
Sbjct: 549 NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQD 583
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNL 41
RAG GVAYT D+D ++A LV+ LEGANQ V L ++
Sbjct: 568 RAGATGVAYTFFCDQDSKYASDLVKILEGANQSVSQQLRDM 608
>gi|397667788|ref|YP_006509325.1| ATP-dependent RNA helicase, specific for 23S rRNA [Legionella
pneumophila subsp. pneumophila]
gi|395131199|emb|CCD09457.1| ATP-dependent RNA helicase, specific for 23S rRNA [Legionella
pneumophila subsp. pneumophila]
Length = 468
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 50/94 (53%), Positives = 67/94 (71%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
E+ + L + + + L+GDM+Q ER+ + +F Q C ILVATDVAARGLDI + V+N
Sbjct: 265 EVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSILVATDVAARGLDIKELSAVIN 324
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+DLA D D H HRIGRTGRAG+KG+A ++VT D
Sbjct: 325 FDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPAD 358
>gi|329895752|ref|ZP_08271143.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088]
gi|328922182|gb|EGG29538.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088]
Length = 462
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 67/94 (71%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
E+A+ L + + LHGDMDQ ER+ V+ +F C +LVATDVAARGLDI + VVN
Sbjct: 259 EVADFLNEHDIEAKALHGDMDQRERDQVLLQFANGSCPVLVATDVAARGLDIKSLAMVVN 318
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
Y+L RD + + HRIGRTGRAG G+A++LVT+ +
Sbjct: 319 YELPRDPEIYVHRIGRTGRAGETGLAFSLVTESE 352
>gi|119944643|ref|YP_942323.1| ATP-dependent RNA helicase [Psychromonas ingrahamii 37]
gi|119863247|gb|ABM02724.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
ingrahamii 37]
Length = 439
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 79/112 (70%)
Query: 31 NQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVA 90
N+E+ A++ A +L+A+ L+ +L+ K Y L LHGD+ Q+ RNS++ F R + ++LV
Sbjct: 243 NEEIKQAIIFTATRLDAQRLSAALSEKGYGTLALHGDLTQNNRNSIMDSFSRGKAQLLVT 302
Query: 91 TDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
TD+A+RGLD+ ++ V+N+D+ + + + HRIGRTGRAG KG A +++ KD
Sbjct: 303 TDIASRGLDLLNVSHVINFDIPKHTEEYIHRIGRTGRAGEKGDAISIIGPKD 354
>gi|413955931|gb|AFW88580.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 768
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 52/96 (54%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+ L + + + LHGD DQ+ R + KFK +LVATDVAARGLDI I+TVV
Sbjct: 478 DEIERELNQRGFRIAALHGDKDQASRMETLQKFKSGTYHVLVATDVAARGLDIKSIKTVV 537
Query: 108 NYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
N+D+A+++D H HRIGRTGRAG+K G AYTL+T K+
Sbjct: 538 NFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKE 573
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K G AYTL+T K+ FAG LV++L A Q+VP LM+LAM+
Sbjct: 557 RAGDKDGTAYTLITQKEARFAGELVQSLIAAGQDVPNELMDLAMK 601
>gi|422911383|ref|ZP_16946006.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-09]
gi|341631519|gb|EGS56408.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-09]
Length = 460
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
>gi|258622745|ref|ZP_05717763.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
gi|424809421|ref|ZP_18234802.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus SX-4]
gi|258584933|gb|EEW09664.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
gi|342323355|gb|EGU19140.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus SX-4]
Length = 460
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 69/96 (71%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNES 352
>gi|262401852|ref|ZP_06078417.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC586]
gi|262351824|gb|EEZ00955.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC586]
Length = 460
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 69/96 (71%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNES 352
>gi|344940975|ref|ZP_08780263.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
gi|344262167|gb|EGW22438.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
Length = 462
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 71/97 (73%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +++A+SL + V LHGD++Q +R+ V+ +F + C +LVATDVAARGLDI ++
Sbjct: 254 DCQDVASSLENSGFTVQALHGDLEQKDRDQVLVRFSNKSCSVLVATDVAARGLDIKDMQA 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+NYDL D + + HRIGRTGRAG KG+A +L T+++
Sbjct: 314 VINYDLPWDPEIYVHRIGRTGRAGKKGLALSLCTEQE 350
>gi|326519741|dbj|BAK00243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 649
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 49/95 (51%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++L+ +L+ ++Y +HGD Q+ER+SV+++F+ C ILVATDVAARGLD+ IR VV
Sbjct: 420 DQLSRNLS-RQYGASAIHGDKSQAERDSVLSEFRTGRCPILVATDVAARGLDVKDIRVVV 478
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD ++ + HRIGRTGRAG G+AYT D+D
Sbjct: 479 NYDFPTGVEDYVHRIGRTGRAGASGIAYTFFCDQD 513
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPAL 38
RAG G+AYT D+D ++A LV+ LEGANQ V P L
Sbjct: 498 RAGASGIAYTFFCDQDSKYASDLVKILEGANQAVSPEL 535
>gi|242278297|ref|YP_002990426.1| DEAD/DEAH box helicase [Desulfovibrio salexigens DSM 2638]
gi|242121191|gb|ACS78887.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
2638]
Length = 521
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 74/103 (71%), Gaps = 1/103 (0%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+A+ +A +L + Y +HGD+ Q+ R ++ +F+++ C+ILVATDVAARG+D+P +
Sbjct: 253 DADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKILVATDVAARGIDVPDLSH 312
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELR 148
VVN+ L +D + HR+GRTGRAG KGVA TL+T ++ G+LR
Sbjct: 313 VVNFALPQDPQSFVHRVGRTGRAGKKGVAVTLITPREF-GKLR 354
>gi|297581406|ref|ZP_06943329.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC385]
gi|297534244|gb|EFH73082.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC385]
Length = 460
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
>gi|365838734|ref|ZP_09380072.1| ATP-independent RNA helicase DbpA [Hafnia alvei ATCC 51873]
gi|364559527|gb|EHM37510.1| ATP-independent RNA helicase DbpA [Hafnia alvei ATCC 51873]
Length = 459
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 69/97 (71%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +++ ++L+ + VL LHGD++Q ER+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 253 DCQDVYDALSGQNISVLALHGDLEQRERDQVLVRFSNRSCRVLVATDVAARGLDIKELEM 312
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVNY+L+ D + H HRIGRT RAG KG+A + V +
Sbjct: 313 VVNYELSFDPEVHVHRIGRTARAGQKGLAVSFVAPSE 349
>gi|407803891|ref|ZP_11150722.1| ATP-dependent RNA helicase DbpA [Alcanivorax sp. W11-5]
gi|407022141|gb|EKE33897.1| ATP-dependent RNA helicase DbpA [Alcanivorax sp. W11-5]
Length = 459
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+E+A++L + + LHGDM+Q ER+ V+ +F + +LVATDVAARGLDI +
Sbjct: 254 QCQEVADALCARGMAAMALHGDMEQRERDDVLIRFASRSLTVLVATDVAARGLDIDALDL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+N +L RD++TH HRIGRTGRAG KG+A +LV +
Sbjct: 314 VINVELGRDVETHVHRIGRTGRAGEKGIAVSLVAPPE 350
>gi|15642559|ref|NP_232192.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121587883|ref|ZP_01677639.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 2740-80]
gi|153819936|ref|ZP_01972603.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae NCTC 8457]
gi|153823551|ref|ZP_01976218.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33]
gi|227082681|ref|YP_002811232.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae M66-2]
gi|254225949|ref|ZP_04919551.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V51]
gi|254851104|ref|ZP_05240454.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MO10]
gi|255744466|ref|ZP_05418418.1| ATP-dependent RNA helicase DbpA [Vibrio cholera CIRS 101]
gi|262154711|ref|ZP_06028837.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae INDRE 91/1]
gi|298500611|ref|ZP_07010415.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MAK 757]
gi|379742343|ref|YP_005334312.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae IEC224]
gi|417818313|ref|ZP_12464940.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HCUF01]
gi|418335555|ref|ZP_12944463.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-06A1]
gi|418338969|ref|ZP_12947862.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-23A1]
gi|418347091|ref|ZP_12951843.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-28A1]
gi|418350848|ref|ZP_12955578.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43A1]
gi|418356514|ref|ZP_12959232.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-61A1]
gi|419827500|ref|ZP_14350998.1| dbpA RNA binding domain protein [Vibrio cholerae CP1033(6)]
gi|419830990|ref|ZP_14354474.1| dbpA RNA binding domain protein [Vibrio cholerae HC-1A2]
gi|421318728|ref|ZP_15769295.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1032(5)]
gi|421326103|ref|ZP_15776626.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1041(14)]
gi|421329762|ref|ZP_15780271.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1042(15)]
gi|421333717|ref|ZP_15784193.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1046(19)]
gi|421340685|ref|ZP_15791116.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-20A2]
gi|421348574|ref|ZP_15798950.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-46A1]
gi|422308492|ref|ZP_16395640.1| dbpA RNA binding domain protein [Vibrio cholerae CP1035(8)]
gi|422897648|ref|ZP_16935085.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-40A1]
gi|422903848|ref|ZP_16938809.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48A1]
gi|422907730|ref|ZP_16942522.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-70A1]
gi|422914570|ref|ZP_16949073.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HFU-02]
gi|422918390|ref|ZP_16952703.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02A1]
gi|422926775|ref|ZP_16959785.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-38A1]
gi|423146096|ref|ZP_17133688.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-19A1]
gi|423150799|ref|ZP_17138085.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-21A1]
gi|423154608|ref|ZP_17141771.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-22A1]
gi|423157675|ref|ZP_17144766.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-32A1]
gi|423166078|ref|ZP_17152794.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48B2]
gi|423732106|ref|ZP_17705406.1| dbpA RNA binding domain protein [Vibrio cholerae HC-17A1]
gi|423772675|ref|ZP_17713670.1| dbpA RNA binding domain protein [Vibrio cholerae HC-50A2]
gi|423823288|ref|ZP_17717295.1| dbpA RNA binding domain protein [Vibrio cholerae HC-55C2]
gi|423857249|ref|ZP_17721097.1| dbpA RNA binding domain protein [Vibrio cholerae HC-59A1]
gi|423884826|ref|ZP_17724690.1| dbpA RNA binding domain protein [Vibrio cholerae HC-60A1]
gi|423897155|ref|ZP_17727714.1| dbpA RNA binding domain protein [Vibrio cholerae HC-62A1]
gi|423932373|ref|ZP_17732108.1| dbpA RNA binding domain protein [Vibrio cholerae HC-77A1]
gi|423998811|ref|ZP_17742060.1| dbpA RNA binding domain protein [Vibrio cholerae HC-02C1]
gi|424003522|ref|ZP_17746595.1| dbpA RNA binding domain protein [Vibrio cholerae HC-17A2]
gi|424007316|ref|ZP_17750284.1| dbpA RNA binding domain protein [Vibrio cholerae HC-37A1]
gi|424017713|ref|ZP_17757538.1| dbpA RNA binding domain protein [Vibrio cholerae HC-55B2]
gi|424020741|ref|ZP_17760521.1| dbpA RNA binding domain protein [Vibrio cholerae HC-59B1]
gi|424025296|ref|ZP_17764944.1| dbpA RNA binding domain protein [Vibrio cholerae HC-62B1]
gi|424028182|ref|ZP_17767782.1| dbpA RNA binding domain protein [Vibrio cholerae HC-69A1]
gi|424587462|ref|ZP_18027039.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1030(3)]
gi|424596118|ref|ZP_18035435.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1040(13)]
gi|424600027|ref|ZP_18039204.1| DEAD/DEAH box helicase family protein [Vibrio Cholerae CP1044(17)]
gi|424602787|ref|ZP_18041925.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1047(20)]
gi|424607722|ref|ZP_18046661.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1050(23)]
gi|424611538|ref|ZP_18050375.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-39A1]
gi|424614367|ref|ZP_18053150.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-41A1]
gi|424618334|ref|ZP_18057003.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-42A1]
gi|424623118|ref|ZP_18061620.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-47A1]
gi|424626012|ref|ZP_18064470.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A1]
gi|424630496|ref|ZP_18068777.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-51A1]
gi|424634542|ref|ZP_18072639.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-52A1]
gi|424637620|ref|ZP_18075625.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55A1]
gi|424641524|ref|ZP_18079403.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A1]
gi|424646080|ref|ZP_18083813.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A2]
gi|424649597|ref|ZP_18087256.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A1]
gi|424653847|ref|ZP_18091225.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A2]
gi|424657666|ref|ZP_18094949.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A2]
gi|440710782|ref|ZP_20891429.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 4260B]
gi|443504896|ref|ZP_21071847.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-64A1]
gi|443508802|ref|ZP_21075556.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-65A1]
gi|443512640|ref|ZP_21079272.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-67A1]
gi|443516199|ref|ZP_21082703.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-68A1]
gi|443519992|ref|ZP_21086378.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-71A1]
gi|443524884|ref|ZP_21091086.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-72A2]
gi|443528626|ref|ZP_21094659.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-78A1]
gi|443532467|ref|ZP_21098480.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-7A1]
gi|443536282|ref|ZP_21102147.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-80A1]
gi|443539812|ref|ZP_21105664.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A1]
gi|449055005|ref|ZP_21733673.1| ATP-dependent 23S rRNA helicase DbpA [Vibrio cholerae O1 str. Inaba
G4222]
gi|9657150|gb|AAF95705.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121547853|gb|EAX57938.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 2740-80]
gi|125621575|gb|EAZ49907.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V51]
gi|126509518|gb|EAZ72112.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae NCTC 8457]
gi|126518935|gb|EAZ76158.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33]
gi|227010569|gb|ACP06781.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae M66-2]
gi|254846809|gb|EET25223.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MO10]
gi|255737991|gb|EET93384.1| ATP-dependent RNA helicase DbpA [Vibrio cholera CIRS 101]
gi|262030551|gb|EEY49189.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae INDRE 91/1]
gi|297540780|gb|EFH76837.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MAK 757]
gi|340035134|gb|EGQ96115.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HCUF01]
gi|341619488|gb|EGS45297.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48A1]
gi|341619597|gb|EGS45400.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-70A1]
gi|341620412|gb|EGS46185.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-40A1]
gi|341635236|gb|EGS59958.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02A1]
gi|341635865|gb|EGS60570.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HFU-02]
gi|341645260|gb|EGS69408.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-38A1]
gi|356416148|gb|EHH69784.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-06A1]
gi|356416733|gb|EHH70357.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-21A1]
gi|356421858|gb|EHH75346.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-19A1]
gi|356427353|gb|EHH80603.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-22A1]
gi|356429012|gb|EHH82231.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-28A1]
gi|356429262|gb|EHH82480.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-23A1]
gi|356438664|gb|EHH91668.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-32A1]
gi|356443740|gb|EHH96558.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43A1]
gi|356449240|gb|EHI01996.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48B2]
gi|356451728|gb|EHI04411.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-61A1]
gi|378795853|gb|AFC59324.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae IEC224]
gi|395915641|gb|EJH26475.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1032(5)]
gi|395915761|gb|EJH26593.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1041(14)]
gi|395926743|gb|EJH37512.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1042(15)]
gi|395927079|gb|EJH37843.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1046(19)]
gi|395938672|gb|EJH49359.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-20A2]
gi|395940938|gb|EJH51618.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-46A1]
gi|395957559|gb|EJH68097.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A2]
gi|395957871|gb|EJH68383.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A2]
gi|395960432|gb|EJH70800.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-42A1]
gi|395969933|gb|EJH79752.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-47A1]
gi|395971711|gb|EJH81343.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1030(3)]
gi|395974100|gb|EJH83636.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1047(20)]
gi|408005975|gb|EKG44155.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-39A1]
gi|408010406|gb|EKG48265.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-41A1]
gi|408010865|gb|EKG48709.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A1]
gi|408016908|gb|EKG54433.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-52A1]
gi|408021877|gb|EKG59111.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A1]
gi|408022302|gb|EKG59519.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55A1]
gi|408030272|gb|EKG66939.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1040(13)]
gi|408031108|gb|EKG67747.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A1]
gi|408040316|gb|EKG76502.1| DEAD/DEAH box helicase family protein [Vibrio Cholerae CP1044(17)]
gi|408041692|gb|EKG77791.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1050(23)]
gi|408051634|gb|EKG86715.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A2]
gi|408052997|gb|EKG88019.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-51A1]
gi|408606920|gb|EKK80333.1| dbpA RNA binding domain protein [Vibrio cholerae CP1033(6)]
gi|408617435|gb|EKK90555.1| dbpA RNA binding domain protein [Vibrio cholerae CP1035(8)]
gi|408619491|gb|EKK92520.1| dbpA RNA binding domain protein [Vibrio cholerae HC-1A2]
gi|408622048|gb|EKK95037.1| dbpA RNA binding domain protein [Vibrio cholerae HC-17A1]
gi|408632642|gb|EKL05082.1| dbpA RNA binding domain protein [Vibrio cholerae HC-50A2]
gi|408634206|gb|EKL06474.1| dbpA RNA binding domain protein [Vibrio cholerae HC-55C2]
gi|408639475|gb|EKL11285.1| dbpA RNA binding domain protein [Vibrio cholerae HC-59A1]
gi|408639868|gb|EKL11673.1| dbpA RNA binding domain protein [Vibrio cholerae HC-60A1]
gi|408653202|gb|EKL24375.1| dbpA RNA binding domain protein [Vibrio cholerae HC-77A1]
gi|408653808|gb|EKL24957.1| dbpA RNA binding domain protein [Vibrio cholerae HC-62A1]
gi|408844057|gb|EKL84193.1| dbpA RNA binding domain protein [Vibrio cholerae HC-37A1]
gi|408844626|gb|EKL84750.1| dbpA RNA binding domain protein [Vibrio cholerae HC-17A2]
gi|408852043|gb|EKL91893.1| dbpA RNA binding domain protein [Vibrio cholerae HC-02C1]
gi|408858332|gb|EKL98008.1| dbpA RNA binding domain protein [Vibrio cholerae HC-55B2]
gi|408866203|gb|EKM05587.1| dbpA RNA binding domain protein [Vibrio cholerae HC-59B1]
gi|408869321|gb|EKM08620.1| dbpA RNA binding domain protein [Vibrio cholerae HC-62B1]
gi|408878036|gb|EKM17050.1| dbpA RNA binding domain protein [Vibrio cholerae HC-69A1]
gi|439973515|gb|ELP49728.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 4260B]
gi|443430619|gb|ELS73178.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-64A1]
gi|443434451|gb|ELS80604.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-65A1]
gi|443438282|gb|ELS88003.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-67A1]
gi|443442406|gb|ELS95715.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-68A1]
gi|443446236|gb|ELT02902.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-71A1]
gi|443449164|gb|ELT09466.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-72A2]
gi|443452963|gb|ELT16797.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-78A1]
gi|443456641|gb|ELT24039.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-7A1]
gi|443460424|gb|ELT31510.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-80A1]
gi|443464496|gb|ELT39158.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A1]
gi|448265623|gb|EMB02857.1| ATP-dependent 23S rRNA helicase DbpA [Vibrio cholerae O1 str. Inaba
G4222]
Length = 460
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
>gi|422923851|ref|ZP_16956990.1| DEAD/DEAH box helicase family protein [Vibrio cholerae BJG-01]
gi|341643322|gb|EGS67615.1| DEAD/DEAH box helicase family protein [Vibrio cholerae BJG-01]
Length = 460
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
>gi|75287517|sp|Q5VQL1.1|RH14_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 14
gi|55296348|dbj|BAD68264.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
gi|222617825|gb|EEE53957.1| hypothetical protein OsJ_00557 [Oryza sativa Japonica Group]
gi|240065031|gb|ACS44654.1| ATP-dependent RNA helicase DB10 [Oryza sativa Japonica Group]
gi|240065056|gb|ACS44655.1| ATP-dependent RNA helicase DB10 [Oryza sativa Indica Group]
Length = 708
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 1/95 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++LA +L ++Y +HGD Q+ER+SV+++F+ C ILVATDVAARGLDI IR VV
Sbjct: 439 DQLARNLA-RQYGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKDIRVVV 497
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD ++ + HRIGRTGRAG GVAYT D+D
Sbjct: 498 NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQD 532
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNL 41
RAG GVAYT D+D ++A LV+ LEGANQ V L ++
Sbjct: 517 RAGATGVAYTFFCDQDSKYASDLVKILEGANQSVSQQLRDM 557
>gi|419838249|ref|ZP_14361686.1| dbpA RNA binding domain protein [Vibrio cholerae HC-46B1]
gi|421356165|ref|ZP_15806495.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-45]
gi|423736209|ref|ZP_17709398.1| dbpA RNA binding domain protein [Vibrio cholerae HC-41B1]
gi|424010543|ref|ZP_17753475.1| dbpA RNA binding domain protein [Vibrio cholerae HC-44C1]
gi|395949279|gb|EJH59905.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-45]
gi|408628921|gb|EKL01638.1| dbpA RNA binding domain protein [Vibrio cholerae HC-41B1]
gi|408855631|gb|EKL95330.1| dbpA RNA binding domain protein [Vibrio cholerae HC-46B1]
gi|408862936|gb|EKM02435.1| dbpA RNA binding domain protein [Vibrio cholerae HC-44C1]
Length = 460
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
>gi|262170498|ref|ZP_06038176.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus MB-451]
gi|261891574|gb|EEY37560.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus MB-451]
Length = 460
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
>gi|424661053|ref|ZP_18098299.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-16]
gi|408049629|gb|EKG84820.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-16]
Length = 460
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
>gi|258625772|ref|ZP_05720651.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
gi|258582010|gb|EEW06880.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
Length = 460
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
>gi|121727419|ref|ZP_01680547.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V52]
gi|147673597|ref|YP_001218057.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395]
gi|227119002|ref|YP_002820898.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395]
gi|262167586|ref|ZP_06035291.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC27]
gi|262190509|ref|ZP_06048754.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae CT 5369-93]
gi|121630191|gb|EAX62591.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V52]
gi|146315480|gb|ABQ20019.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395]
gi|227014452|gb|ACP10662.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395]
gi|262024039|gb|EEY42735.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC27]
gi|262033605|gb|EEY52098.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae CT 5369-93]
Length = 460
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
>gi|429885944|ref|ZP_19367511.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae PS15]
gi|429227090|gb|EKY33145.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae PS15]
Length = 460
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
>gi|304415003|ref|ZP_07395797.1| ATP-dependent RNA helicase specific for 23S rRNA [Candidatus
Regiella insecticola LSR1]
gi|304283089|gb|EFL91508.1| ATP-dependent RNA helicase specific for 23S rRNA [Candidatus
Regiella insecticola LSR1]
Length = 464
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 67/99 (67%)
Query: 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
+L+ + L +L + VL LHGD+DQ ER+ V +F CRILVATDVAARGLDI +
Sbjct: 253 KLDCQRLYQALKSCQMSVLALHGDLDQHERDQVWVRFANHSCRILVATDVAARGLDIKQL 312
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN+++A D + + HRIGRTGRAG G A TL T ++
Sbjct: 313 ALVVNFEVAFDPEVYIHRIGRTGRAGIGGCAVTLCTPQE 351
>gi|153825787|ref|ZP_01978454.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-2]
gi|254291477|ref|ZP_04962269.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae AM-19226]
gi|417821870|ref|ZP_12468483.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE39]
gi|421352261|ref|ZP_15802625.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-25]
gi|423958686|ref|ZP_17735587.1| dbpA RNA binding domain protein [Vibrio cholerae HE-40]
gi|423985831|ref|ZP_17739143.1| dbpA RNA binding domain protein [Vibrio cholerae HE-46]
gi|149740510|gb|EDM54625.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-2]
gi|150422667|gb|EDN14622.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae AM-19226]
gi|340035906|gb|EGQ96883.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE39]
gi|395949661|gb|EJH60281.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-25]
gi|408656084|gb|EKL27190.1| dbpA RNA binding domain protein [Vibrio cholerae HE-40]
gi|408663351|gb|EKL34230.1| dbpA RNA binding domain protein [Vibrio cholerae HE-46]
Length = 460
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
>gi|383190752|ref|YP_005200880.1| DNA/RNA helicase [Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371589010|gb|AEX52740.1| DNA/RNA helicase, superfamily II [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 460
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 70/97 (72%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +E+ ++LT K L L+GD++Q +R+ V+ +F CR+LVATDVAARGLDI +
Sbjct: 254 DCQEVCDALTAKGISTLALNGDLEQRDRDRVLVRFSNGSCRVLVATDVAARGLDIKQLGL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+NY+L+ D + H HR+GRTGRAG G+A +LVT ++
Sbjct: 314 VINYELSFDPEVHVHRVGRTGRAGTSGLAVSLVTPQE 350
>gi|449144198|ref|ZP_21775014.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus CAIM 602]
gi|449080134|gb|EMB51052.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus CAIM 602]
Length = 460
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
>gi|417825776|ref|ZP_12472363.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE48]
gi|340045634|gb|EGR06575.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE48]
Length = 460
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
>gi|153215195|ref|ZP_01949876.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 1587]
gi|153831172|ref|ZP_01983839.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 623-39]
gi|384425493|ref|YP_005634851.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae LMA3984-4]
gi|424592255|ref|ZP_18031678.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1037(10)]
gi|124114840|gb|EAY33660.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 1587]
gi|148873341|gb|EDL71476.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 623-39]
gi|327485046|gb|AEA79453.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae LMA3984-4]
gi|408029741|gb|EKG66445.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1037(10)]
Length = 460
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
>gi|148263462|ref|YP_001230168.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
gi|146396962|gb|ABQ25595.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
Length = 474
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 71/99 (71%)
Query: 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
++ +E+A++L + + L +HGD++Q ER+ V+ +F + +LVATDVAARGLDI +
Sbjct: 263 KIECQEVADALVKRGFSALAIHGDLEQRERDQVLVRFANKSVSVLVATDVAARGLDIKEL 322
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+NY+L+RD + H HRIGRTGRAG G+ +LVT ++
Sbjct: 323 AAVINYELSRDPEIHIHRIGRTGRAGETGLGLSLVTAQE 361
>gi|153801095|ref|ZP_01955681.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-3]
gi|124123328|gb|EAY42071.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-3]
Length = 460
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
>gi|159489124|ref|XP_001702547.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280569|gb|EDP06326.1| predicted protein [Chlamydomonas reinhardtii]
Length = 600
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 68/105 (64%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + A+EL LT + +HGD Q +R + FK + ++VATDVAARG
Sbjct: 405 LVFVETKRGADELERILTRNQLPATSIHGDRSQEQREMALRSFKSGKTPVMVATDVAARG 464
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
LDIPH+ V+NYDL +DID + HRIGRTGRAG+KG+A TD D
Sbjct: 465 LDIPHVTHVINYDLPKDIDDYVHRIGRTGRAGHKGLATAFFTDSD 509
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 22/42 (52%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG+KG+A TD D A LV L NQ VP L N A
Sbjct: 494 RAGHKGLATAFFTDSDAPLARSLVEVLTETNQTVPGWLQNYA 535
>gi|302845088|ref|XP_002954083.1| hypothetical protein VOLCADRAFT_82651 [Volvox carteri f.
nagariensis]
gi|300260582|gb|EFJ44800.1| hypothetical protein VOLCADRAFT_82651 [Volvox carteri f.
nagariensis]
Length = 612
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 64/97 (65%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
A+EL LT + +HGD Q +R + FK + ++VATDVAARGLDIPH+
Sbjct: 419 GADELERILTRNQLPATSIHGDRSQEQREMALRSFKSGKTPVMVATDVAARGLDIPHVTH 478
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+NYDL +DID + HRIGRTGRAG+KG+A TD D
Sbjct: 479 VINYDLPKDIDDYVHRIGRTGRAGHKGLATAFFTDAD 515
>gi|360036434|ref|YP_004938197.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O1 str.
2010EL-1786]
gi|417814574|ref|ZP_12461226.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-49A2]
gi|419834676|ref|ZP_14358129.1| dbpA RNA binding domain protein [Vibrio cholerae HC-61A2]
gi|421322305|ref|ZP_15772856.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1038(11)]
gi|421337260|ref|ZP_15787720.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1048(21)]
gi|423161246|ref|ZP_17148183.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-33A2]
gi|340035384|gb|EGQ96364.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-49A2]
gi|356443324|gb|EHH96146.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-33A2]
gi|356647588|gb|AET27643.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O1 str.
2010EL-1786]
gi|395916854|gb|EJH27683.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1038(11)]
gi|395930288|gb|EJH41036.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1048(21)]
gi|408648465|gb|EKL19805.1| dbpA RNA binding domain protein [Vibrio cholerae HC-61A2]
Length = 434
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 231 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 290
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 291 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 325
>gi|229507384|ref|ZP_04396889.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae BX 330286]
gi|229509692|ref|ZP_04399173.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33]
gi|229516817|ref|ZP_04406263.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC9]
gi|229521626|ref|ZP_04411044.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TM 11079-80]
gi|229527506|ref|ZP_04416898.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 12129(1)]
gi|229606890|ref|YP_002877538.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MJ-1236]
gi|229335138|gb|EEO00623.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 12129(1)]
gi|229341220|gb|EEO06224.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TM 11079-80]
gi|229345880|gb|EEO10852.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC9]
gi|229353166|gb|EEO18105.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33]
gi|229354889|gb|EEO19810.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae BX 330286]
gi|229369545|gb|ACQ59968.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MJ-1236]
Length = 439
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 236 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 295
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 296 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 330
>gi|421344980|ref|ZP_15795382.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43B1]
gi|395939063|gb|EJH49749.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43B1]
Length = 439
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 236 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 295
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 296 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 330
>gi|365922328|ref|ZP_09446556.1| DEAD/DEAH box helicase [Cardiobacterium valvarum F0432]
gi|364574541|gb|EHM51994.1| DEAD/DEAH box helicase [Cardiobacterium valvarum F0432]
Length = 441
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 81/125 (64%), Gaps = 2/125 (1%)
Query: 21 GHLVRNLEG--ANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVIT 78
GH R LE A+ ++ ++ A + ++EE+A+SL + LHGD+ Q +RN ++
Sbjct: 227 GHKNRILEHLVADPDMGQTIIFAATKRSSEEIADSLRDNGHRARFLHGDLPQVKRNRIVE 286
Query: 79 KFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
++ +C ILVATDVAARG+DIP I V+NYDL R ++ + HRIGR+GRAG GVA L
Sbjct: 287 DLRKGKCDILVATDVAARGIDIPAISHVINYDLPRQVEDYVHRIGRSGRAGRSGVAINLC 346
Query: 139 TDKDK 143
+ D+
Sbjct: 347 SLADR 351
>gi|229513487|ref|ZP_04402951.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TMA 21]
gi|229349364|gb|EEO14320.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TMA 21]
Length = 439
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 236 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 295
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 296 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 330
>gi|229524545|ref|ZP_04413950.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae bv. albensis
VL426]
gi|229338126|gb|EEO03143.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae bv. albensis
VL426]
Length = 439
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 236 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 295
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 296 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 330
>gi|375092115|ref|ZP_09738400.1| hypothetical protein HMPREF9709_01262 [Helcococcus kunzii ATCC
51366]
gi|374561881|gb|EHR33218.1| hypothetical protein HMPREF9709_01262 [Helcococcus kunzii ATCC
51366]
Length = 540
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 73/103 (70%), Gaps = 2/103 (1%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
++L LT Y+V LHGDM QS+R++V+ +F+ IL+ATD+AARGLD+ ++ V
Sbjct: 252 VDQLVTDLTKLGYNVDALHGDMKQSQRDNVMKRFRASTIEILIATDIAARGLDVENVDLV 311
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD--GEL 147
VNYDL + D + HRIGRT RAG KG+++T VT +D++ GE+
Sbjct: 312 VNYDLPQQNDYYVHRIGRTARAGKKGISFTFVTSRDRNKLGEI 354
>gi|428183429|gb|EKX52287.1| hypothetical protein GUITHDRAFT_161357 [Guillardia theta CCMP2712]
Length = 593
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 56/122 (45%), Positives = 75/122 (61%), Gaps = 2/122 (1%)
Query: 23 LVRNLEGANQEVPPA--LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80
LVR L N+++P L+ A + ++L L Y +HGD DQ ER+ V+ +F
Sbjct: 386 LVRILSAFNKDMPDGKILIFSATKRTTDDLVFELRRCGYRAFGIHGDKDQQERDWVLGQF 445
Query: 81 KRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
KR +C+ILVATDVA+RGLD+ + VVNYD+ I + HRIGRTGRAG G AY+ T
Sbjct: 446 KRGDCQILVATDVASRGLDVNDVLLVVNYDMPGQISDYVHRIGRTGRAGRSGTAYSFFTR 505
Query: 141 KD 142
D
Sbjct: 506 ND 507
>gi|261211120|ref|ZP_05925409.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC341]
gi|260839621|gb|EEX66232.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC341]
Length = 460
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 KNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 351
>gi|262166586|ref|ZP_06034323.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus VM223]
gi|262026302|gb|EEY44970.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus VM223]
Length = 388
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A++L + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 185 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 244
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 245 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNE 279
>gi|323493918|ref|ZP_08099035.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546]
gi|323311859|gb|EGA65006.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546]
Length = 458
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 70/95 (73%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A+ L+ + + V+ LHGDM+Q ER +T F + ILVATDVAARGLD+ ++ V
Sbjct: 256 QNVADELSHRGFSVVELHGDMEQREREQALTMFANKSISILVATDVAARGLDVDNLDAVF 315
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG+KG+A++ ++K+
Sbjct: 316 NFELSRDPEVHVHRIGRTGRAGSKGIAFSFFSEKE 350
>gi|418020224|ref|ZP_12659532.1| Superfamily II DNA and RNA helicase [Candidatus Regiella
insecticola R5.15]
gi|347604428|gb|EGY29086.1| Superfamily II DNA and RNA helicase [Candidatus Regiella
insecticola R5.15]
Length = 464
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 69/106 (65%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
L+ +L+ + L +L + VL LHGD+DQ ER+ V +F CRIL+ATDVAAR
Sbjct: 246 CLIFCNTKLDCQRLYQALKSCQMSVLALHGDLDQHERDQVWVRFANHSCRILIATDVAAR 305
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
GLDI + VVN+++A D + + HRIGRTGRAG G A TL T ++
Sbjct: 306 GLDIKQLALVVNFEVAFDPEVYIHRIGRTGRAGIGGCAVTLCTPQE 351
>gi|253689218|ref|YP_003018408.1| DEAD/DEAH box helicase domain-containing protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251755796|gb|ACT13872.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 460
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 71/97 (73%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + ++L ++ VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVFDALDMRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG +G+A +L T ++
Sbjct: 314 VVNFELAFDPEVHVHRIGRTGRAGMQGLAVSLCTPQE 350
>gi|397664543|ref|YP_006506081.1| ATP-dependent RNA helicase, specific for 23S rRNA [Legionella
pneumophila subsp. pneumophila]
gi|395127954|emb|CCD06156.1| ATP-dependent RNA helicase, specific for 23S rRNA [Legionella
pneumophila subsp. pneumophila]
Length = 468
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 50/94 (53%), Positives = 66/94 (70%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
E+ + L + + L+GDM+Q ER+ + +F Q C ILVATDVAARGLDI + V+N
Sbjct: 265 EVTDQLINEGFSATALNGDMEQVERDLAVLRFANQSCSILVATDVAARGLDIKELSAVIN 324
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+DLA D D H HRIGRTGRAG+KG+A ++VT D
Sbjct: 325 FDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPAD 358
>gi|429211506|ref|ZP_19202671.1| ATP-dependent RNA helicase DbpA [Pseudomonas sp. M1]
gi|428155988|gb|EKX02536.1| ATP-dependent RNA helicase DbpA [Pseudomonas sp. M1]
Length = 458
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 65/94 (69%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
ELA +L ++ L LHGD++Q ER+ V+ F + C +LVATDVAARGLDI + V+N
Sbjct: 257 ELAQALDAQKISALALHGDLEQRERDQVLAMFANRSCSVLVATDVAARGLDIEGLEAVIN 316
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+L+RD H HRIGR+GRAG KG+A +LV +
Sbjct: 317 VELSRDAQVHVHRIGRSGRAGEKGLALSLVAPAE 350
>gi|320590111|gb|EFX02556.1| dead deah box RNA helicase [Grosmannia clavigera kw1407]
Length = 1178
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 71/108 (65%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ + Q A+EL L K Y + LHG DQS+R+S I+ FK+ C +LVAT VAAR
Sbjct: 790 ALIFVERQEKADELLRELLRKGYACMSLHGGKDQSDRDSTISDFKKGVCPVLVATSVAAR 849
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
GLD+ ++ VVNYD ++ + HR GRTGRAGN G A T VT++ ++
Sbjct: 850 GLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQEN 897
>gi|147918815|ref|YP_687459.1| ATP-dependent RNA helicase [Methanocella arvoryzae MRE50]
gi|110622855|emb|CAJ38133.1| ATP-dependent RNA helicase [Methanocella arvoryzae MRE50]
Length = 451
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 50/106 (47%), Positives = 74/106 (69%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ + ++ +EL LT + Y + LHGDMDQ RNS++ +FK + ++LVATDVAAR
Sbjct: 243 AIVFVRTKVRVDELQEGLTRRGYAAVGLHGDMDQQRRNSIMKQFKNGKTQVLVATDVAAR 302
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
GLDI + V N+D+ RD +++ HRIGRTGRAG G++ T VT ++
Sbjct: 303 GLDISDVSHVFNFDIPRDPESYVHRIGRTGRAGKSGISITFVTFRE 348
>gi|119773890|ref|YP_926630.1| ATP-dependent RNA helicase DbpA [Shewanella amazonensis SB2B]
gi|119766390|gb|ABL98960.1| ATP-dependent RNA helicase DbpA [Shewanella amazonensis SB2B]
Length = 467
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 66/95 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+++A+ LT + VL LHGD++Q +R+ + +F + +LVATDVAARGLDI + V
Sbjct: 263 QKVADDLTAAGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALDAVF 322
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NY +A D + H HRIGRTGRAG+KG AYT DKD
Sbjct: 323 NYHVAHDTEVHIHRIGRTGRAGSKGAAYTFFNDKD 357
>gi|119505184|ref|ZP_01627259.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080]
gi|119458875|gb|EAW39975.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080]
Length = 465
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 66/94 (70%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
E+A L + + +HGD++Q ER+ V+ +F C +LVA+DVAARGLDIP + VVN
Sbjct: 259 EVARFLREHDIEAAAIHGDLEQRERDQVLLQFANNSCPVLVASDVAARGLDIPSLEMVVN 318
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
++L RD DT+ HRIGRTGRAG G A+++VT +
Sbjct: 319 FELPRDADTYVHRIGRTGRAGESGKAFSIVTPPE 352
>gi|388456988|ref|ZP_10139283.1| ATP-dependent RNA helicase DbpA [Fluoribacter dumoffii Tex-KL]
Length = 468
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 64/94 (68%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
E+ + L + + L L+GDMDQ RN + +F + C ILVATDVAARGLDI + V+N
Sbjct: 265 EVTDQLIQEGFCALALNGDMDQVTRNLAVLRFANRSCSILVATDVAARGLDIKELSAVIN 324
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+DLA D D H HRIGRTGRAG+KG+A + T D
Sbjct: 325 FDLAFDNDVHIHRIGRTGRAGSKGIALNITTPAD 358
>gi|227114116|ref|ZP_03827772.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 460
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 70/97 (72%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + ++L ++ V LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG KG+A +L T ++
Sbjct: 314 VVNFELAFDPEVHVHRIGRTGRAGTKGLAVSLCTPQE 350
>gi|163802622|ref|ZP_02196513.1| ATP-dependent RNA helicase DbpA [Vibrio sp. AND4]
gi|159173510|gb|EDP58330.1| ATP-dependent RNA helicase DbpA [Vibrio sp. AND4]
Length = 459
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 70/95 (73%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A+ L K + V+ LHGD++Q ER+ +T+F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADELHHKGFSVIELHGDLEQRERDQALTQFANKSVSILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG+KG+A++ +KD
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKD 351
>gi|357127458|ref|XP_003565397.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 14-like
[Brachypodium distachyon]
Length = 655
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 49/95 (51%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++L+ +L+ ++Y +HGD Q+ER+SV+++F+ C ILVATDVAARGLD+ IR VV
Sbjct: 414 DQLSRNLS-RQYGASAIHGDKSQAERDSVLSEFRNGRCPILVATDVAARGLDVKDIRVVV 472
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD ++ + HRIGRTGRAG G+AYT D+D
Sbjct: 473 NYDFPTGVEDYVHRIGRTGRAGATGLAYTFFCDQD 507
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG G+AYT D+D ++A LV+ LEGANQ V L ++A
Sbjct: 492 RAGATGLAYTFFCDQDSKYASDLVKILEGANQSVSQQLRDMA 533
>gi|227328700|ref|ZP_03832724.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 434
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 70/97 (72%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + ++L ++ V LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 228 DCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELEL 287
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG KG+A +L T ++
Sbjct: 288 VVNFELAFDPEVHVHRIGRTGRAGTKGLAVSLCTPQE 324
>gi|403059355|ref|YP_006647572.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402806681|gb|AFR04319.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 460
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 70/97 (72%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + ++L ++ V LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG KG+A +L T ++
Sbjct: 314 VVNFELAFDPEVHVHRIGRTGRAGTKGLAVSLCTPQE 350
>gi|330447635|ref|ZP_08311283.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328491826|dbj|GAA05780.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 461
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 69/96 (71%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+E+++ L + + LHGD++Q ER+ + F + ILVATDVAARGLDI ++ V
Sbjct: 256 AQEISDDLEAYGFSAIALHGDLEQRERDRTLVLFANKSRSILVATDVAARGLDIDNLDAV 315
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+NY LARD + H HRIGRTGRAG+KG+A +L +DK+
Sbjct: 316 INYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKE 351
>gi|320540013|ref|ZP_08039670.1| putative ATP-dependent RNA helicase, specific for 23S rRNA
[Serratia symbiotica str. Tucson]
gi|320029936|gb|EFW11958.1| putative ATP-dependent RNA helicase, specific for 23S rRNA
[Serratia symbiotica str. Tucson]
Length = 461
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 61/83 (73%)
Query: 60 DVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHT 119
VL LHGD++Q ER+ V+ +F + CR+LVATDVAARGLDI + VVNY+LA D H
Sbjct: 268 SVLALHGDLEQRERDQVLVRFTNRSCRVLVATDVAARGLDITELELVVNYELAFDPQVHV 327
Query: 120 HRIGRTGRAGNKGVAYTLVTDKD 142
HRIGRTGRAG G+A +L T ++
Sbjct: 328 HRIGRTGRAGRHGLAISLCTPQE 350
>gi|71747700|ref|XP_822905.1| ATP-dependent DEAD/H RNA helicase HEL64 [Trypanosoma brucei
TREU927]
gi|70832573|gb|EAN78077.1| ATP-dependent DEAD/H RNA helicase HEL64, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 568
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 50/100 (50%), Positives = 67/100 (67%)
Query: 43 MQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPH 102
M+ A+EL L YD + +HGD +Q +R ++ +F++ LVATDVAARGLDI
Sbjct: 354 MKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPRLCLVATDVAARGLDIKQ 413
Query: 103 IRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+ TV+NYD ID + HRIGRTGRAG KG A+TL+T K+
Sbjct: 414 LETVINYDFPMQIDDYVHRIGRTGRAGAKGDAFTLITKKE 453
>gi|197337401|ref|YP_002157747.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
binding domain protein [Vibrio fischeri MJ11]
gi|197314653|gb|ACH64102.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
binding domain protein [Vibrio fischeri MJ11]
Length = 462
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A+ L ++ V LHGD++Q +R+ + +F + ILVATDVAARGLDI + VV
Sbjct: 257 QEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDVAARGLDIESLDAVV 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAGNKG+A +L +K+
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEKE 351
>gi|54294961|ref|YP_127376.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila str. Lens]
gi|53754793|emb|CAH16280.1| hypothetical protein lpl2040 [Legionella pneumophila str. Lens]
Length = 468
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 49/94 (52%), Positives = 67/94 (71%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
E+ + L + + + L+GDM+Q ER+ + +F + C ILVATDVAARGLDI + V+N
Sbjct: 265 EVTDQLINEGFSAIALNGDMEQIERDLAVLRFANKSCSILVATDVAARGLDIKELSAVIN 324
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+DLA D D H HRIGRTGRAG+KG+A ++VT D
Sbjct: 325 FDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPAD 358
>gi|54301892|ref|YP_131885.1| ATP-dependent RNA helicase DbpA [Photobacterium profundum SS9]
gi|46915312|emb|CAG22085.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
SS9]
Length = 462
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 69/96 (71%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+E+++ L + + LHGD++Q ER+ + F + +LVATDVAARGLDI + V
Sbjct: 256 AQEVSDDLVDYGFSSIALHGDLEQRERDQALVLFANKSTSVLVATDVAARGLDIDSLDAV 315
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+NY LARD + H HRIGRTGRAG+KG+A +L++DK+
Sbjct: 316 INYHLARDTEVHVHRIGRTGRAGSKGIACSLISDKE 351
>gi|302789414|ref|XP_002976475.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii]
gi|300155513|gb|EFJ22144.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii]
Length = 613
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 54/114 (47%), Positives = 67/114 (58%)
Query: 29 GANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRIL 88
G N ++P L+ + + A+ L + L +HGD Q ER + F+ IL
Sbjct: 409 GLNGQLPLILVFVETKRGADSLEDWLIQMGISATTIHGDRTQVEREHALRSFRTGVTPIL 468
Query: 89 VATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VATDVAARGLDIPH+ V+NYDL DID + HRIGRTGRAG G A TDKD
Sbjct: 469 VATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGKSGFATAFFTDKD 522
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 24/46 (52%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLN 46
RAG G A TDKD A LV ++ ANQ+VP L + A N
Sbjct: 507 RAGKSGFATAFFTDKDTSLARPLVDLMQEANQQVPEWLASCAAHSN 552
>gi|375090043|ref|ZP_09736362.1| hypothetical protein HMPREF9708_00752 [Facklamia languida CCUG
37842]
gi|374565936|gb|EHR37191.1| hypothetical protein HMPREF9708_00752 [Facklamia languida CCUG
37842]
Length = 499
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 69/91 (75%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+ L+++ Y ++HGD+ Q +R SVI F+++E +LVATDVAARGLDI + V
Sbjct: 254 DEVGRGLSLRGYQAEMIHGDITQQKRTSVINAFRKEEVELLVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
NYD+++D +++ HRIGRTGRAGN+G++ TLV
Sbjct: 314 NYDISQDPESYVHRIGRTGRAGNEGISLTLV 344
>gi|59713337|ref|YP_206112.1| ATP-dependent RNA helicase DbpA [Vibrio fischeri ES114]
gi|59481585|gb|AAW87224.1| ATP-dependent RNA helicase, specific for 23S rRNA [Vibrio fischeri
ES114]
Length = 462
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A+ L ++ V LHGD++Q +R+ + +F + ILVATDVAARGLDI + VV
Sbjct: 257 QEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDVAARGLDIESLDAVV 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAGNKG+A +L +K+
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEKE 351
>gi|383813906|ref|ZP_09969329.1| ATP-dependent RNA helicase DbpA [Serratia sp. M24T3]
gi|383297104|gb|EIC85415.1| ATP-dependent RNA helicase DbpA [Serratia sp. M24T3]
Length = 460
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 70/97 (72%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +E+A++L K VL L+GD++Q +R+ V+ +F CR+LVATDVAARGLDI +
Sbjct: 254 DCQEVADTLASKGISVLALNGDLEQRDRDRVLVRFSNGSCRVLVATDVAARGLDIKQLGL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+NY+L+ D + H HR+GRTGRAG G+A +LV ++
Sbjct: 314 VINYELSFDPEVHVHRVGRTGRAGTSGLAISLVAPQE 350
>gi|423687490|ref|ZP_17662293.1| ATP-dependent RNA helicase DbpA [Vibrio fischeri SR5]
gi|371493273|gb|EHN68876.1| ATP-dependent RNA helicase DbpA [Vibrio fischeri SR5]
Length = 462
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A+ L ++ V LHGD++Q +R+ + +F + ILVATDVAARGLDI + VV
Sbjct: 257 QEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDVAARGLDIESLDAVV 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAGNKG+A +L +K+
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEKE 351
>gi|386750015|ref|YP_006223222.1| ATP-dependent RNA helicase [Helicobacter cetorum MIT 00-7128]
gi|384556258|gb|AFI04592.1| ATP-dependent RNA helicase [Helicobacter cetorum MIT 00-7128]
Length = 513
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 66/104 (63%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A EL L K Y LHGDM+Q ER + I FK+ E +LVATDVA+RGLDI + V
Sbjct: 288 ANELNQILNAKNYKCTALHGDMEQRERRASIMAFKKNEVDVLVATDVASRGLDISDVSHV 347
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KGVA TLVT + LR Q
Sbjct: 348 FNYHLPLNTESYIHRIGRTGRAGKKGVAITLVTPLEYKELLRMQ 391
>gi|261332727|emb|CBH15722.1| ATP-dependent DEAD/H RNA helicase HEL64,putative [Trypanosoma
brucei gambiense DAL972]
Length = 568
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 50/100 (50%), Positives = 67/100 (67%)
Query: 43 MQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPH 102
M+ A+EL L YD + +HGD +Q +R ++ +F++ LVATDVAARGLDI
Sbjct: 354 MKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPRLCLVATDVAARGLDIKQ 413
Query: 103 IRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+ TV+NYD ID + HRIGRTGRAG KG A+TL+T K+
Sbjct: 414 LETVINYDFPMQIDDYVHRIGRTGRAGAKGDAFTLITKKE 453
>gi|354596730|ref|ZP_09014747.1| DEAD/DEAH box helicase domain protein [Brenneria sp. EniD312]
gi|353674665|gb|EHD20698.1| DEAD/DEAH box helicase domain protein [Brenneria sp. EniD312]
Length = 460
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 71/97 (73%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + ++L + VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI ++
Sbjct: 254 DCQSVFDALDARGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLQL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG +G+A +L T ++
Sbjct: 314 VVNFELAFDPEVHVHRIGRTGRAGMEGLAVSLCTPQE 350
>gi|119946353|ref|YP_944033.1| ATP-dependent RNA helicase DbpA [Psychromonas ingrahamii 37]
gi|119864957|gb|ABM04434.1| ATP-dependent RNA helicase DbpA [Psychromonas ingrahamii 37]
Length = 462
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 68/95 (71%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A+ L + + L LHGD++Q +R+ + +F + ILVATDVAARGLDI ++ V
Sbjct: 257 QEVADELANRGFSALALHGDLEQKDRDQALIRFANKSASILVATDVAARGLDIDNLSAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NY +A D + H HRIGRTGRAGNKG+A++ +DK+
Sbjct: 317 NYHIAHDQELHVHRIGRTGRAGNKGLAFSFYSDKE 351
>gi|410452638|ref|ZP_11306602.1| ATP-dependent RNA helicase [Bacillus bataviensis LMG 21833]
gi|409934120|gb|EKN71036.1| ATP-dependent RNA helicase [Bacillus bataviensis LMG 21833]
Length = 496
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 70/97 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +LT++ Y +HGD+ Q++R SV+ KFK ILVATDVAARGLDI + V
Sbjct: 254 DELSEALTLRGYTAEGIHGDLTQAKRMSVLRKFKEGTIDILVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++ HRIGRTGRAG KG+A T +T ++K
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKKGIALTFITPREKS 350
>gi|449484206|ref|XP_004156816.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
24-like [Cucumis sativus]
Length = 774
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 1/96 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+ + L K + V LHGD DQ+ R + KFK +L+ATDVAARGLDI I++VV
Sbjct: 493 DEVESQLLQKSFKVAALHGDKDQASRMETLQKFKSGVYHVLIATDVAARGLDIKSIKSVV 552
Query: 108 NYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
N+D+A+D+D H HRIGRTGRAG+K G A+TL+T K+
Sbjct: 553 NFDIAKDMDMHVHRIGRTGRAGDKDGRAHTLITQKE 588
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K G A+TL+T K+ FAG LV +L A Q V LM+LAM+
Sbjct: 572 RAGDKDGRAHTLITQKEARFAGELVNSLIAAGQNVSVELMDLAMK 616
>gi|258544391|ref|ZP_05704625.1| ATP-dependent RNA helicase RhlE [Cardiobacterium hominis ATCC
15826]
gi|258520350|gb|EEV89209.1| ATP-dependent RNA helicase RhlE [Cardiobacterium hominis ATCC
15826]
Length = 296
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 78/122 (63%), Gaps = 5/122 (4%)
Query: 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
HLV A+ E+ A++ A + +EE+A+SL + LHGD+ Q +RN ++ +
Sbjct: 97 HLV-----ADPEMGQAIIFAATKRASEEIADSLRDNGFRARYLHGDLPQVKRNRIVEDLR 151
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141
+ +C ILVATDVAARG+D+P I V+NYDL R ++ + HRIGR+GRAG G A L +
Sbjct: 152 KGKCDILVATDVAARGIDVPAISHVINYDLPRQVEDYVHRIGRSGRAGRTGTAINLCSLA 211
Query: 142 DK 143
D+
Sbjct: 212 DR 213
>gi|150017770|ref|YP_001310024.1| DEAD/DEAH box helicase [Clostridium beijerinckii NCIMB 8052]
gi|149904235|gb|ABR35068.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
NCIMB 8052]
Length = 524
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 74/110 (67%)
Query: 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92
E A++ + N +EL L + Y +HGDM+Q++R + + KFK L+ATD
Sbjct: 242 EPTSAIIFCKTKRNVDELVEGLQGRGYTAEGMHGDMNQNQRINTLRKFKEGSLEFLIATD 301
Query: 93 VAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VAARG+D+ ++ V+NYDL +D++++ HRIGRTGRA KGVAYTLVT ++
Sbjct: 302 VAARGIDVENVTHVINYDLPQDVESYVHRIGRTGRANRKGVAYTLVTARE 351
>gi|449469020|ref|XP_004152219.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 24-like [Cucumis
sativus]
Length = 777
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 1/96 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+ + L K + V LHGD DQ+ R + KFK +L+ATDVAARGLDI I++VV
Sbjct: 490 DEVESQLLQKSFKVAALHGDKDQASRMETLQKFKSGVYHVLIATDVAARGLDIKSIKSVV 549
Query: 108 NYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
N+D+A+D+D H HRIGRTGRAG+K G A+TL+T K+
Sbjct: 550 NFDIAKDMDMHVHRIGRTGRAGDKDGRAHTLITQKE 585
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K G A+TL+T K+ FAG LV +L A Q V LM+LAM+
Sbjct: 569 RAGDKDGRAHTLITQKEARFAGELVNSLIAAGQNVSVELMDLAMK 613
>gi|440794934|gb|ELR16079.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 972
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 68/103 (66%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + Q + +EL L +++ V+ LHG DQ +R+ I KFK+ E ILVAT V ARG
Sbjct: 494 LIFVDSQSSVDELFAELLKRKFPVMSLHGGQDQIDRDHTINKFKKTENAILVATSVVARG 553
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
LD+P + VVNYD ++ + HR+GRTGRAG KG AYT VTD
Sbjct: 554 LDVPDLNLVVNYDCPNHMEDYVHRVGRTGRAGRKGWAYTFVTD 596
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG KG AYT VTD + ++A LV+ LE + VP +L LA
Sbjct: 583 RAGRKGWAYTFVTDDEDKYAPDLVKALEQSGASVPESLKKLA 624
>gi|440231263|ref|YP_007345056.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
gi|440052968|gb|AGB82871.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
Length = 460
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + ++L ++ L LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVCDALEARDISALALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVNY++A D + H HR+GRTGRAG G A TL T ++
Sbjct: 314 VVNYEMAFDPEVHVHRVGRTGRAGMSGQAITLCTPQE 350
>gi|340724160|ref|XP_003400452.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX46-like [Bombus terrestris]
Length = 1030
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 81/133 (60%), Gaps = 2/133 (1%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ +V ++D++F + + + G Q+ A++ + Q NA+ L L Y + LHG +
Sbjct: 592 HVVVLEEDQKF--YKLLEILGHYQDKGSAIIFVDKQENADTLLKDLMKASYSCMSLHGGI 649
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
DQ +R+S I FK ++LVAT VAARGLD+ H+ VVNYD + + HR GRTGRA
Sbjct: 650 DQCDRDSTILDFKAGRTKLLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRCGRTGRA 709
Query: 129 GNKGVAYTLVTDK 141
GNKG AYT +T +
Sbjct: 710 GNKGYAYTFITSE 722
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV 56
RAGNKG AYT +T + + +AG ++R E A VP L L A + A+ V
Sbjct: 708 RAGNKGYAYTFITSEQERYAGDILRAHELAGVPVPEPLRQLWEGYKARQAADGKKV 763
>gi|254500508|ref|ZP_05112659.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
gi|222436579|gb|EEE43258.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
Length = 480
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 82/130 (63%), Gaps = 3/130 (2%)
Query: 14 DKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSER 73
D DK A L LEGA +++ A++ + + L SL EY+V LHGDMDQ R
Sbjct: 228 DYDKRVA--LRELLEGA-EDLQNAIVFCNRKRDISTLFRSLERHEYNVGALHGDMDQRTR 284
Query: 74 NSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGV 133
++ F++ ++LVA+DVAARGLDIP + V NYD+ + + + HRIGRTGRAG G
Sbjct: 285 MMMLENFRKGAIKLLVASDVAARGLDIPEVSHVFNYDVPINAEDYVHRIGRTGRAGRSGT 344
Query: 134 AYTLVTDKDK 143
AYTLVT+ D+
Sbjct: 345 AYTLVTESDQ 354
>gi|224012647|ref|XP_002294976.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969415|gb|EED87756.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 387
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 74/110 (67%), Gaps = 10/110 (9%)
Query: 45 LNAEELANSLTVKEYD---VLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIP 101
L +E++ NS + D V+ +HGD DQ +RNS I +FK+ IL+ATDVAARGLDIP
Sbjct: 255 LLSEKVTNSQALVGNDNSTVVSIHGDKDQRDRNSAIYQFKKNSQAILIATDVAARGLDIP 314
Query: 102 HIRTVVNYDLARDIDTHTHRIGRTGRAG-------NKGVAYTLVTDKDKD 144
+ TV+N+D A++ID+H HRIGR GR +GVAYTL+TD + D
Sbjct: 315 DVMTVINFDAAKNIDSHVHRIGRAGRMSKEDSGQHQRGVAYTLMTDGNAD 364
>gi|356565189|ref|XP_003550826.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 52B-like [Glycine
max]
Length = 610
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 11 LVTDKDK--EFAGHLVRN-LEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGD 67
LV D DK HL R + GAN + L+ + + A+ L L + + +HGD
Sbjct: 329 LVQDMDKRDHLINHLRRQKVHGANGKHALTLVFVETKRGADVLEGWLLRSGFSAVAIHGD 388
Query: 68 MDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGR 127
Q ER + FK ILVATDVA+RGLDIPH+ V+N+DL RDID + HRIGRTGR
Sbjct: 389 KVQMERERALRSFKSGLTPILVATDVASRGLDIPHVAHVINFDLPRDIDNYVHRIGRTGR 448
Query: 128 AGNKGVAYTLVTDKDK 143
AG G+A +DK+
Sbjct: 449 AGKSGLATAFFSDKNS 464
>gi|242051919|ref|XP_002455105.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
gi|241927080|gb|EES00225.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
Length = 673
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/95 (53%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++LA +L+ ++Y +HGD QSER+SV+ F+ C +LVATDVAARGLDI IR VV
Sbjct: 416 DQLARNLS-RQYGASAIHGDKSQSERDSVLNDFRSGRCPVLVATDVAARGLDIKDIRVVV 474
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD ++ + HRIGRTGRAG G AYT D+D
Sbjct: 475 NYDFPTGVEDYVHRIGRTGRAGATGSAYTFFGDQD 509
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAM 43
RAG G AYT D+D ++A LV+ LEGANQ VP L +A+
Sbjct: 494 RAGATGSAYTFFGDQDSKYASDLVKILEGANQSVPQQLKEMAL 536
>gi|384249989|gb|EIE23469.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 573
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 66/105 (62%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + A+ L + L + +HGD Q ER + + F+ ILVATDVAARG
Sbjct: 347 LVFVETKRGADALEDFLAGNNFPATSIHGDRSQQEREAALRSFRSGRTPILVATDVAARG 406
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
LDIPH+ V+N+DL D+D + HRIGRTGRAG KG+A TDKD
Sbjct: 407 LDIPHVTHVINFDLPTDVDDYVHRIGRTGRAGKKGLATAFFTDKD 451
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG KG+A TDKD A L L+ NQEVP L N++
Sbjct: 436 RAGKKGLATAFFTDKDAGLAKGLAELLQETNQEVPGWLQNIS 477
>gi|347758173|ref|YP_004865735.1| DEAD/DEAH box helicase [Micavibrio aeruginosavorus ARL-13]
gi|347590691|gb|AEP09733.1| DEAD/DEAH box helicase family protein [Micavibrio aeruginosavorus
ARL-13]
Length = 649
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 69/96 (71%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+ LA LT ++ LHGD+ Q++R+ VI F+ ++ RILVATDVAARGLDIPHI V
Sbjct: 246 ADRLARKLTQDDFRSEALHGDLRQNKRDRVIRSFRDKKYRILVATDVAARGLDIPHIEHV 305
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VNYDL + + + HRIGRTGRAG +G A L+T +D
Sbjct: 306 VNYDLPQCAEDYIHRIGRTGRAGAEGNAVCLLTSED 341
>gi|342184324|emb|CCC93805.1| putative ATP-dependent DEAD/H RNA helicase HEL64 [Trypanosoma
congolense IL3000]
Length = 576
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 10/137 (7%)
Query: 16 DKEFAGHLVRNLEGANQEVPPALMN----------LAMQLNAEELANSLTVKEYDVLLLH 65
+++ H + E A + LMN M+ A+EL L YD + +H
Sbjct: 321 NRDVTQHFILTQEHAKLDELKTLMNEHRSERVLVFCKMKRTADELERQLQRWGYDAMAIH 380
Query: 66 GDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRT 125
GD +Q +R ++ +F++ LVATDVAARGLDI + TV+NYD ID + HRIGRT
Sbjct: 381 GDKEQRQREFILARFRKDPRLCLVATDVAARGLDIKQLETVINYDFPMQIDDYVHRIGRT 440
Query: 126 GRAGNKGVAYTLVTDKD 142
GRAG KG A+TL+T ++
Sbjct: 441 GRAGAKGEAFTLITKRE 457
>gi|153871201|ref|ZP_02000433.1| ATP-dependent RNA helicase DbpA [Beggiatoa sp. PS]
gi|152072333|gb|EDN69567.1| ATP-dependent RNA helicase DbpA [Beggiatoa sp. PS]
Length = 466
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/100 (49%), Positives = 68/100 (68%)
Query: 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
+L +E+A L Y + +HGD++Q ER+ V+ +F + C ILVATDVAARGLDI +
Sbjct: 257 KLQCQEIATQLKKNGYYAIAIHGDLEQKERDQVLLRFANKSCSILVATDVAARGLDINDL 316
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+ V+NY+L D H HRIGRTGRAG KG+A +L T ++
Sbjct: 317 QVVINYELPGSQDIHIHRIGRTGRAGKKGLALSLYTASEQ 356
>gi|350408906|ref|XP_003488552.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Bombus
impatiens]
Length = 1030
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 81/133 (60%), Gaps = 2/133 (1%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ +V ++D++F + + + G Q+ A++ + Q NA+ L L Y + LHG +
Sbjct: 592 HVVVLEEDQKF--YKLLEILGHYQDKGSAIIFVDKQENADTLLKDLMKASYSCMSLHGGI 649
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
DQ +R+S I FK ++LVAT VAARGLD+ H+ VVNYD + + HR GRTGRA
Sbjct: 650 DQCDRDSTILDFKAGRTKLLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRCGRTGRA 709
Query: 129 GNKGVAYTLVTDK 141
GNKG AYT +T +
Sbjct: 710 GNKGYAYTFITSE 722
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV 56
RAGNKG AYT +T + + +AG ++R E A VP L L A + A+ V
Sbjct: 708 RAGNKGYAYTFITSEQERYAGDILRAHELAGVPVPEPLRQLWEGYKARQAADGKKV 763
>gi|307202910|gb|EFN82130.1| Probable ATP-dependent RNA helicase DDX46 [Harpegnathos saltator]
Length = 1034
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 81/133 (60%), Gaps = 2/133 (1%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ +V ++D++F + + + G Q+ A++ + Q NA+ L L Y + LHG +
Sbjct: 596 HVVVLEEDQKF--YKLLEILGHYQDKGSAIIFVDKQENADTLLKDLMKASYSCMSLHGGI 653
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
DQ +R+S I FK ++LVAT VAARGLD+ H+ VVNYD + + HR GRTGRA
Sbjct: 654 DQCDRDSTILDFKAGRTKLLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRCGRTGRA 713
Query: 129 GNKGVAYTLVTDK 141
GNKG AYT +T +
Sbjct: 714 GNKGYAYTFITSE 726
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV 56
RAGNKG AYT +T + + +AG ++R E A VP L L A + A+ V
Sbjct: 712 RAGNKGYAYTFITSEQERYAGDILRAHELAGVLVPEPLRQLWEGYKARQAADGKKV 767
>gi|119774410|ref|YP_927150.1| DEAD/DEAH box helicase [Shewanella amazonensis SB2B]
gi|119766910|gb|ABL99480.1| DEAD/DEAH box helicase-like protein [Shewanella amazonensis SB2B]
Length = 456
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 72/109 (66%)
Query: 42 AMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIP 101
A + + E LA L K Y+ L G++ Q++RN ++ F R+ RILV TDVA+RGLDI
Sbjct: 254 ATRQDTERLATLLAEKGYNTAALSGELRQAQRNQIMDSFSREHHRILVTTDVASRGLDIS 313
Query: 102 HIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
++ VVN+D+ + + + HRIGRTGRAGNKG A +LV KD D L+ Q
Sbjct: 314 NVSLVVNFDMPKFAEEYVHRIGRTGRAGNKGTAISLVGPKDWDNFLKVQ 362
>gi|306821248|ref|ZP_07454862.1| ATP-dependent RNA helicase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304550760|gb|EFM38737.1| ATP-dependent RNA helicase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 517
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 35 PPALMNLA-MQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV 93
PP + + +EL + L +++Y V +HGDM Q R V+ +FK+ RILVATDV
Sbjct: 240 PPLCIIFGRTKRRVDELISGLQLRDYKVEGIHGDMKQDRREKVLERFKKGNIRILVATDV 299
Query: 94 AARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
AARGLDI + V+N+DL ++I+ + HRIGRTGRAG GV++T V K+
Sbjct: 300 AARGLDISGVTHVINFDLPQEIEGYVHRIGRTGRAGKSGVSFTFVHPKE 348
>gi|399077018|ref|ZP_10752254.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
gi|398036112|gb|EJL29334.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
Length = 663
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 62/96 (64%)
Query: 50 LANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109
+A SL +D +HGD+DQS+R + F+ +ILVA+DVAARGLDIP + V NY
Sbjct: 262 VAKSLKSHGFDAAAIHGDLDQSQRMKTLAAFRDGSLKILVASDVAARGLDIPAVSHVFNY 321
Query: 110 DLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145
D+ D + HRIGRTGRAG G+AY LVT D G
Sbjct: 322 DVPHHADDYVHRIGRTGRAGRSGIAYMLVTPADDKG 357
>gi|343493756|ref|ZP_08732054.1| ATP-dependent RNA helicase DbpA [Vibrio nigripulchritudo ATCC
27043]
gi|342825857|gb|EGU60320.1| ATP-dependent RNA helicase DbpA [Vibrio nigripulchritudo ATCC
27043]
Length = 462
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 71/97 (73%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +E+A+ L ++ V+ LHGDM+Q +R+ + +F + ILVATDVAARGLD+ ++
Sbjct: 255 DVDEVADELRYHDFSVIALHGDMEQRQRDQALVQFANKSVSILVATDVAARGLDVDNLDA 314
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+N+ LARD + H HRIGRTGRAG +G A++ +++K+
Sbjct: 315 VINFHLARDPEVHVHRIGRTGRAGAQGCAHSFISEKE 351
>gi|402309844|ref|ZP_10828816.1| DEAD/DEAH box helicase [Eubacterium sp. AS15]
gi|400370387|gb|EJP23373.1| DEAD/DEAH box helicase [Eubacterium sp. AS15]
Length = 517
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 35 PPALMNLA-MQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV 93
PP + + +EL + L +++Y V +HGDM Q R V+ +FK+ RILVATDV
Sbjct: 240 PPLCIIFGRTKRRVDELISGLQLRDYKVEGIHGDMKQDRREKVLERFKKGNIRILVATDV 299
Query: 94 AARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
AARGLDI + V+N+DL ++I+ + HRIGRTGRAG GV++T V K+
Sbjct: 300 AARGLDISGVTHVINFDLPQEIEGYVHRIGRTGRAGKSGVSFTFVHPKE 348
>gi|309792203|ref|ZP_07686675.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG-6]
gi|308225744|gb|EFO79500.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG6]
Length = 523
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 69/98 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
A+ L SL + Y +LHGDM Q++R+ V+ +F+ + +LVATDVAARGLDIP +
Sbjct: 251 EADALGESLQGRGYLSEVLHGDMSQAQRDRVMKRFREGQAELLVATDVAARGLDIPDVTH 310
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
V+NYD+ D + + HRIGRTGRAG G+A TL+T +++
Sbjct: 311 VINYDVPNDPEAYVHRIGRTGRAGRTGLAITLITPRER 348
>gi|254491400|ref|ZP_05104579.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010]
gi|224462878|gb|EEF79148.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010]
Length = 460
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 69/97 (71%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+++A+ L ++ D L +HGD+DQ +R+ V+ +F C +LVATDVAARGLDI ++
Sbjct: 254 QCDDVADFLNNEQIDALAIHGDLDQRDRDQVLVRFANNSCPVLVATDVAARGLDIKALQM 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+NY+L RD + + HRIGRTGRAG G+A ++VT +
Sbjct: 314 VINYELPRDPEVYVHRIGRTGRAGQTGLAMSIVTPNE 350
>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
Length = 499
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 70/95 (73%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +L+++ Y +HGD+ Q++R+SV+ KFK +LVATDVAARGLDI + V
Sbjct: 254 DELSKALSIRGYQAEGIHGDLSQAKRSSVLRKFKEGRIEVLVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD+ +D +++ HRIGRTGRAG +G+A T VT ++
Sbjct: 314 NYDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPRE 348
>gi|321456211|gb|EFX67324.1| hypothetical protein DAPPUDRAFT_302036 [Daphnia pulex]
Length = 797
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ LV + +++F L L G QE L+ + Q +A++L L YD + LHG +
Sbjct: 356 HVLVMEDEQKFLKLL--ELLGVYQEQGSVLVFVEKQESADDLLKDLMKAGYDCISLHGGI 413
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
DQ +R+S + FK + ++++AT VAARGLD+ H+ VVNYD + + HR GRTGRA
Sbjct: 414 DQYDRDSAVVDFKNGKIKLMIATSVAARGLDVKHLILVVNYDCPNHHEDYIHRCGRTGRA 473
Query: 129 GNKGVAYTLVT 139
GNKG AYT +T
Sbjct: 474 GNKGFAYTFIT 484
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK 57
RAGNKG AYT +T + AG +++ +E + VP L L Q ++ A TV+
Sbjct: 472 RAGNKGFAYTFITPDQQRAAGDIIKAMEQSETPVPVELQTLWDQYKSKLAAEGKTVR 528
>gi|302783318|ref|XP_002973432.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii]
gi|300159185|gb|EFJ25806.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii]
Length = 506
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 67/114 (58%)
Query: 29 GANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRIL 88
G N ++P L+ + + A+ L + L +HGD Q ER + F+ IL
Sbjct: 308 GLNGQLPLILVFVETKRGADSLEDWLIQMGISATTIHGDRTQVEREHALRSFRTGVTPIL 367
Query: 89 VATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VATDVAARGLDIPH+ V+NYDL DID + HRIGRTGRAG G A TDKD
Sbjct: 368 VATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGKSGFATAFFTDKD 421
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 24/46 (52%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLN 46
RAG G A TDKD A LV ++ ANQ+VP L + A N
Sbjct: 406 RAGKSGFATAFFTDKDTSLARPLVDLMQEANQQVPEWLASCAAHSN 451
>gi|388255845|ref|ZP_10133026.1| ATP-dependent RNA helicase DbpA [Cellvibrio sp. BR]
gi|387939545|gb|EIK46095.1| ATP-dependent RNA helicase DbpA [Cellvibrio sp. BR]
Length = 458
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 67/97 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +EL + L + + L LHGD++Q ER+ V+ +F + C +L+ATDVAARG+DI +
Sbjct: 255 SCDELLDYLRKQGVNALALHGDLEQKERDQVLVRFSNKSCSVLIATDVAARGIDIKGLDA 314
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+N DLARD + H HRIGRTGRAG G+A LV K+
Sbjct: 315 VINVDLARDSEVHVHRIGRTGRAGESGLALNLVVQKE 351
>gi|328786029|ref|XP_001122722.2| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Apis
mellifera]
Length = 1030
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 81/133 (60%), Gaps = 2/133 (1%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ +V ++D++F + + + G Q+ A++ + Q NA+ L L Y + LHG +
Sbjct: 592 HVVVLEEDQKF--YKLLEILGHYQDKGSAIIFVDKQENADTLLKDLMKASYSCMSLHGGI 649
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
DQ +R+S I FK ++LVAT VAARGLD+ H+ VVNYD + + HR GRTGRA
Sbjct: 650 DQCDRDSTILDFKAGRTKLLVATSVAARGLDVKHLILVVNYDCPNHYEDYVHRCGRTGRA 709
Query: 129 GNKGVAYTLVTDK 141
GNKG AYT +T +
Sbjct: 710 GNKGYAYTFITSE 722
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV 56
RAGNKG AYT +T + + +AG ++R E A VP L L A + A+ V
Sbjct: 708 RAGNKGYAYTFITSEQERYAGDILRAHELAGVPVPEPLRQLWEGYKARQAADGKKV 763
>gi|336450305|ref|ZP_08620756.1| DNA/RNA helicase, superfamily II [Idiomarina sp. A28L]
gi|336282700|gb|EGN75921.1| DNA/RNA helicase, superfamily II [Idiomarina sp. A28L]
Length = 464
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 70/98 (71%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A+SL + Y L LHGD++Q +R+ + +F + R+LVATDVAARGLDI + V+
Sbjct: 255 QAMADSLRTQGYSALALHGDLEQKDRDQTLVQFNNRSARVLVATDVAARGLDITDLDLVL 314
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145
N ++A D DTH HRIGRTGRAG +G+A TLV + ++ G
Sbjct: 315 NSEIAHDTDTHVHRIGRTGRAGAEGLAVTLVGEGEEHG 352
>gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase [Caulobacter sp. K31]
gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
Length = 678
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 61/96 (63%)
Query: 50 LANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109
+A SL +D +HGD+DQS+R + F+ +ILVA+DVAARGLDIP + V NY
Sbjct: 262 VAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGSLKILVASDVAARGLDIPAVSHVFNY 321
Query: 110 DLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145
D+ D + HRIGRTGRAG GV Y LVT D G
Sbjct: 322 DVPHHADDYVHRIGRTGRAGRSGVTYMLVTPADDKG 357
>gi|193788232|dbj|BAG53126.1| unnamed protein product [Homo sapiens]
Length = 625
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/80 (63%), Positives = 67/80 (83%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 238 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 297
Query: 98 LDIPHIRTVVNYDLARDIDT 117
LDIP I+TV+NYD+ARDIDT
Sbjct: 298 LDIPSIKTVINYDVARDIDT 317
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/35 (68%), Positives = 27/35 (77%)
Query: 10 TLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
TL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 317 TLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 351
>gi|326796106|ref|YP_004313926.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
gi|326546870|gb|ADZ92090.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
MMB-1]
Length = 460
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + +A+ L + + +HGD++Q +R+ V+ +F + I+VATDVAARG+D+ I
Sbjct: 256 DTQAVADFLNEQSVSTVAIHGDLEQKQRDQVLVRFANKSACIMVATDVAARGIDVKEIDL 315
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+N+D RDID HTHRIGRTGRAG+ G A + +TDKD
Sbjct: 316 VINFDTTRDIDVHTHRIGRTGRAGHSGQALSFITDKD 352
>gi|390449448|ref|ZP_10235054.1| DEAD/DEAH box helicase [Nitratireductor aquibiodomus RA22]
gi|389664141|gb|EIM75649.1| DEAD/DEAH box helicase [Nitratireductor aquibiodomus RA22]
Length = 470
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 64/94 (68%)
Query: 50 LANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109
L SL EYD LHGDMDQ R +++ F++ ++LVA+DVAARGLDIP + V N+
Sbjct: 262 LFRSLVRHEYDAGALHGDMDQRARMTMLENFRKGNLKLLVASDVAARGLDIPDVSHVFNF 321
Query: 110 DLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
D+ D + HRIGRTGRAG KG A+TL+T D+
Sbjct: 322 DIPTHADDYVHRIGRTGRAGRKGAAFTLITKADR 355
>gi|254506632|ref|ZP_05118773.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
gi|219550505|gb|EED27489.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
Length = 458
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 70/96 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ + + L+ + + V+ LHGDM+Q ER +T F + ILVATDVAARGLD+ ++ V
Sbjct: 256 QNVTDELSHRGFSVVELHGDMEQREREQALTMFANKSISILVATDVAARGLDVDNLDAVF 315
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
N++L+RD + H HRIGRTGRAG+KGVA++ ++K++
Sbjct: 316 NFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEE 351
>gi|373450995|ref|ZP_09542934.1| DEAD-box ATP-dependent RNA helicase cshA [Wolbachia pipientis
wAlbB]
gi|371931802|emb|CCE77952.1| DEAD-box ATP-dependent RNA helicase cshA [Wolbachia pipientis
wAlbB]
Length = 408
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 68/97 (70%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A++LA+ L +Y L +HGD+ Q +R VI F+R +I+VATDVA+RGLDIPHI+ V
Sbjct: 253 ADQLADKLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVASRGLDIPHIQHV 312
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+NYD+ + + HRIGRT RAG +G A + VT +DK
Sbjct: 313 INYDVPQSQADYVHRIGRTARAGAEGFALSFVTPQDK 349
>gi|306843833|ref|ZP_07476431.1| DEAD-box ATP dependent DNA helicase [Brucella inopinata BO1]
gi|306275911|gb|EFM57627.1| DEAD-box ATP dependent DNA helicase [Brucella inopinata BO1]
Length = 482
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 66/97 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ EL SLT E+D LHGDMDQ R ++++ FK + R+LVA+DVAARGLDIP +
Sbjct: 259 DVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSH 318
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V N+D+ + + HRIGRTGRAG G A+T+VT D
Sbjct: 319 VFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSD 355
>gi|343507494|ref|ZP_08744899.1| ATP-dependent RNA helicase DbpA [Vibrio ichthyoenteri ATCC 700023]
gi|342798286|gb|EGU33910.1| ATP-dependent RNA helicase DbpA [Vibrio ichthyoenteri ATCC 700023]
Length = 458
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 68/93 (73%)
Query: 50 LANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109
+A+ L + + V+ LHGD++Q ER+ +T F + ILVATDVAARGLD+ ++ V N+
Sbjct: 258 VADELHNRGFSVIELHGDLEQRERDQALTMFANKSISILVATDVAARGLDVDNLDAVFNF 317
Query: 110 DLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+L+RD + H HRIGRTGRAG+KG A++ +DKD
Sbjct: 318 ELSRDPEVHVHRIGRTGRAGSKGQAFSFFSDKD 350
>gi|42521033|ref|NP_966948.1| DEAD-box ATP dependent DNA helicase [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|42410774|gb|AAS14882.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
endosymbiont of Drosophila melanogaster]
Length = 408
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 67/97 (69%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A++LAN L +Y L +HGD+ Q +R VI F+R +I+VATDVA+RGLDIPHI+ V
Sbjct: 253 ADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVASRGLDIPHIQHV 312
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+NYD + + HRIGRT RAG +G A + VT +DK
Sbjct: 313 INYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDK 349
>gi|303288181|ref|XP_003063379.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455211|gb|EEH52515.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 513
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 60/149 (40%), Positives = 83/149 (55%), Gaps = 15/149 (10%)
Query: 3 GNKGVAYTLVTDK---------DKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANS 53
G G ++TL+T + K LV ++G L+ + + A++L +
Sbjct: 271 GRVGSSHTLITQQIEYLRSYEDKKSMLMDLVHAVKGLT------LVFVETKRGADQLEDW 324
Query: 54 LTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLAR 113
L+ + + +HGD Q ER + F+ ILVATDVAARGLDIPH+ V+N+DL
Sbjct: 325 LSREGFPSTSIHGDRTQQEREYALKSFRSGRTPILVATDVAARGLDIPHVTHVINFDLPS 384
Query: 114 DIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
DID + HRIGRTGRAG KG+A TDKD
Sbjct: 385 DIDDYVHRIGRTGRAGKKGLATAFFTDKD 413
>gi|448242582|ref|YP_007406635.1| ATP-dependent RNA helicase [Serratia marcescens WW4]
gi|445212946|gb|AGE18616.1| ATP-dependent RNA helicase [Serratia marcescens WW4]
Length = 460
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 67/97 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + L LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQTVLEALEARGISALALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVNY+LA D + H HRIGRTGRAG G+A +L T ++
Sbjct: 314 VVNYELAFDPEVHVHRIGRTGRAGMSGLAISLCTPQE 350
>gi|295689524|ref|YP_003593217.1| DEAD/DEAH box helicase [Caulobacter segnis ATCC 21756]
gi|295431427|gb|ADG10599.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
21756]
Length = 524
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 62/96 (64%)
Query: 50 LANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109
+A SL V YD +HGD+DQ++R + F+ +ILVA+DVAARGLDIP + V NY
Sbjct: 262 VAKSLKVHGYDAAPIHGDLDQTQRMKTLADFRSGALKILVASDVAARGLDIPAVSHVFNY 321
Query: 110 DLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145
D+ D + HRIGRTGRAG G+ Y LVT D G
Sbjct: 322 DVPHHADDYVHRIGRTGRAGRTGITYMLVTPADDKG 357
>gi|453065296|gb|EMF06259.1| ATP-dependent RNA helicase DbpA [Serratia marcescens VGH107]
gi|453066332|gb|EMF07279.1| ATP-dependent RNA helicase DbpA [Serratia marcescens VGH107]
gi|453066921|gb|EMF07839.1| ATP-dependent RNA helicase DbpA [Serratia marcescens VGH107]
Length = 460
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 67/97 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + L LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQTVLEALEARGISALALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVNY+LA D + H HRIGRTGRAG G+A +L T ++
Sbjct: 314 VVNYELAFDPEVHVHRIGRTGRAGMSGLAISLCTPQE 350
>gi|225677315|ref|ZP_03788292.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
of Muscidifurax uniraptor]
gi|225590642|gb|EEH11892.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
of Muscidifurax uniraptor]
Length = 402
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 67/97 (69%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A++LAN L +Y L +HGD+ Q +R VI F+R +I+VATDVA+RGLDIPHI+ V
Sbjct: 247 ADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVASRGLDIPHIQHV 306
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+NYD + + HRIGRT RAG +G A + VT +DK
Sbjct: 307 INYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDK 343
>gi|115437436|ref|NP_001043295.1| Os01g0549400 [Oryza sativa Japonica Group]
gi|143455968|sp|Q5JKF2.2|RH40_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 40
gi|57899403|dbj|BAD88050.1| putative ATP-dependent RNA helicase DB10 [Oryza sativa Japonica
Group]
gi|113532826|dbj|BAF05209.1| Os01g0549400 [Oryza sativa Japonica Group]
gi|125570769|gb|EAZ12284.1| hypothetical protein OsJ_02174 [Oryza sativa Japonica Group]
Length = 792
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
++LA +LT +++ +HGD QSER V++ F+ ILVATDVAARGLDI IR V
Sbjct: 408 CDQLARTLT-RQFGASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVV 466
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+NYD I+ + HRIGRTGRAG GVAYT D+D
Sbjct: 467 INYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQD 502
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG GVAYT D+D ++A L++ LEGANQ VP L ++A
Sbjct: 487 RAGATGVAYTFFCDQDSKYAADLIKILEGANQRVPRDLADMA 528
>gi|436840104|ref|YP_007324482.1| DEAD/DEAH box helicase domain protein [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
gi|432169010|emb|CCO22376.1| DEAD/DEAH box helicase domain protein [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
Length = 585
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 74/103 (71%), Gaps = 1/103 (0%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+A+ +A LT ++Y +HGD+ QS R ++ KF+ ++C+ILVATDVAARG+D+P +
Sbjct: 319 DADRVAGLLTERKYPAEPIHGDLSQSRREEILKKFRNRKCKILVATDVAARGIDVPDLSH 378
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELR 148
V+N+ L +D ++ HR+GRTGRAG G+A T++ ++ G+LR
Sbjct: 379 VINFALPQDPQSYVHRVGRTGRAGKSGIAVTIINPREF-GKLR 420
>gi|261213932|ref|ZP_05928213.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
gi|260915539|gb|EEX82400.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
Length = 482
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 66/97 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ EL SLT E+D LHGDMDQ R ++++ FK + R+LVA+DVAARGLDIP +
Sbjct: 259 DVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSH 318
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V N+D+ + + HRIGRTGRAG G A+T+VT D
Sbjct: 319 VFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSD 355
>gi|163843207|ref|YP_001627611.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
gi|163673930|gb|ABY38041.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
Length = 482
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 66/97 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ EL SLT E+D LHGDMDQ R ++++ FK + R+LVA+DVAARGLDIP +
Sbjct: 259 DVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSH 318
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V N+D+ + + HRIGRTGRAG G A+T+VT D
Sbjct: 319 VFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSD 355
>gi|265984026|ref|ZP_06096761.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
83/13]
gi|264662618|gb|EEZ32879.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
83/13]
Length = 482
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 66/97 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ EL SLT E+D LHGDMDQ R ++++ FK + R+LVA+DVAARGLDIP +
Sbjct: 259 DVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSH 318
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V N+D+ + + HRIGRTGRAG G A+T+VT D
Sbjct: 319 VFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSD 355
>gi|17987318|ref|NP_539952.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str.
16M]
gi|225852449|ref|YP_002732682.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis ATCC 23457]
gi|256264057|ref|ZP_05466589.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
gi|260563958|ref|ZP_05834444.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
gi|260754681|ref|ZP_05867029.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260883707|ref|ZP_05895321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|265991030|ref|ZP_06103587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|265994867|ref|ZP_06107424.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|297248281|ref|ZP_06931999.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
gi|384211314|ref|YP_005600396.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
gi|384408416|ref|YP_005597037.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
gi|384445012|ref|YP_005603731.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis NI]
gi|17982999|gb|AAL52216.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str.
16M]
gi|225640814|gb|ACO00728.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis ATCC 23457]
gi|260153974|gb|EEW89066.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
gi|260674789|gb|EEX61610.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260873235|gb|EEX80304.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|262765980|gb|EEZ11769.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|263001814|gb|EEZ14389.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|263094252|gb|EEZ18122.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
gi|297175450|gb|EFH34797.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
gi|326408963|gb|ADZ66028.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
gi|326538677|gb|ADZ86892.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
gi|349743004|gb|AEQ08547.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis NI]
Length = 482
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 66/97 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ EL SLT E+D LHGDMDQ R ++++ FK + R+LVA+DVAARGLDIP +
Sbjct: 259 DVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSH 318
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V N+D+ + + HRIGRTGRAG G A+T+VT D
Sbjct: 319 VFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSD 355
>gi|51595988|ref|YP_070179.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis IP
32953]
gi|186895088|ref|YP_001872200.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis PB1/+]
gi|51589270|emb|CAH20891.1| ATP-dependent RNA helicase [Yersinia pseudotuberculosis IP 32953]
gi|186698114|gb|ACC88743.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
PB1/+]
Length = 460
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + SL + VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+N++LA D + H HRIGRTGRAG G+A +L T ++
Sbjct: 314 VINFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQE 350
>gi|306840451|ref|ZP_07473211.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
gi|306289585|gb|EFM60800.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
Length = 482
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 66/97 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ EL SLT E+D LHGDMDQ R ++++ FK + R+LVA+DVAARGLDIP +
Sbjct: 259 DVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSH 318
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V N+D+ + + HRIGRTGRAG G A+T+VT D
Sbjct: 319 VFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSD 355
>gi|23501822|ref|NP_697949.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
gi|161618894|ref|YP_001592781.1| ATP-dependent RNA helicase DDX17 [Brucella canis ATCC 23365]
gi|256369364|ref|YP_003106872.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
CCM 4915]
gi|260566511|ref|ZP_05836981.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
gi|261325038|ref|ZP_05964235.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
5K33]
gi|261752249|ref|ZP_05995958.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
5 str. 513]
gi|261754908|ref|ZP_05998617.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
3 str. 686]
gi|294852292|ref|ZP_06792965.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
gi|376274316|ref|YP_005114755.1| ATP-dependent RNA helicase [Brucella canis HSK A52141]
gi|376280615|ref|YP_005154621.1| DEAD/DEAH box helicase [Brucella suis VBI22]
gi|384224609|ref|YP_005615773.1| DEAD/DEAH box helicase [Brucella suis 1330]
gi|23347756|gb|AAN29864.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
1330]
gi|161335705|gb|ABX62010.1| Probable ATP-dependent RNA helicase DDX17 [Brucella canis ATCC
23365]
gi|255999524|gb|ACU47923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
CCM 4915]
gi|260156029|gb|EEW91109.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
gi|261301018|gb|EEY04515.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
5K33]
gi|261742002|gb|EEY29928.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
5 str. 513]
gi|261744661|gb|EEY32587.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
3 str. 686]
gi|294820881|gb|EFG37880.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
gi|343382789|gb|AEM18281.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
gi|358258214|gb|AEU05949.1| DEAD-box ATP dependent DNA helicase [Brucella suis VBI22]
gi|363402883|gb|AEW13178.1| ATP-dependent RNA helicase [Brucella canis HSK A52141]
Length = 482
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 66/97 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ EL SLT E+D LHGDMDQ R ++++ FK + R+LVA+DVAARGLDIP +
Sbjct: 259 DVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSH 318
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V N+D+ + + HRIGRTGRAG G A+T+VT D
Sbjct: 319 VFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSD 355
>gi|153947047|ref|YP_001401319.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis IP
31758]
gi|170024671|ref|YP_001721176.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis YPIII]
gi|152958542|gb|ABS46003.1| ATP-independent RNA helicase DbpA [Yersinia pseudotuberculosis IP
31758]
gi|169751205|gb|ACA68723.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
YPIII]
Length = 460
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + SL + VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+N++LA D + H HRIGRTGRAG G+A +L T ++
Sbjct: 314 VINFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQE 350
>gi|120553901|ref|YP_958252.1| DEAD/DEAH box helicase [Marinobacter aquaeolei VT8]
gi|120323750|gb|ABM18065.1| ATP-dependent RNA helicase DbpA [Marinobacter aquaeolei VT8]
Length = 457
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/96 (52%), Positives = 67/96 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +EL++ L + L LHGD+DQ ER+S + +F Q C +LVATDVAARGLDI +
Sbjct: 252 DCDELSDELGRLGFSALSLHGDLDQRERDSALVRFANQSCTVLVATDVAARGLDIKGLPL 311
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141
V+N + ARD + HTHR+GRTGRAG +G A TL T +
Sbjct: 312 VINAEPARDPEVHTHRVGRTGRAGEQGHAVTLCTPR 347
>gi|62289879|ref|YP_221672.1| DEAD/DEAH box helicase [Brucella abortus bv. 1 str. 9-941]
gi|82699806|ref|YP_414380.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
gi|189024121|ref|YP_001934889.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
S19]
gi|237815373|ref|ZP_04594371.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
gi|260545377|ref|ZP_05821118.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
gi|260757905|ref|ZP_05870253.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260761727|ref|ZP_05874070.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|376273333|ref|YP_005151911.1| DEAD/DEAH box helicase [Brucella abortus A13334]
gi|423166951|ref|ZP_17153654.1| hypothetical protein M17_00641 [Brucella abortus bv. 1 str. NI435a]
gi|423170675|ref|ZP_17157350.1| hypothetical protein M19_01208 [Brucella abortus bv. 1 str. NI474]
gi|423173245|ref|ZP_17159916.1| hypothetical protein M1A_00643 [Brucella abortus bv. 1 str. NI486]
gi|423177470|ref|ZP_17164116.1| hypothetical protein M1E_01712 [Brucella abortus bv. 1 str. NI488]
gi|423180106|ref|ZP_17166747.1| hypothetical protein M1G_01206 [Brucella abortus bv. 1 str. NI010]
gi|423183238|ref|ZP_17169875.1| hypothetical protein M1I_01207 [Brucella abortus bv. 1 str. NI016]
gi|423185822|ref|ZP_17172436.1| hypothetical protein M1K_00640 [Brucella abortus bv. 1 str. NI021]
gi|423188960|ref|ZP_17175570.1| hypothetical protein M1M_00642 [Brucella abortus bv. 1 str. NI259]
gi|62196011|gb|AAX74311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
bv. 1 str. 9-941]
gi|82615907|emb|CAJ10911.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
C-terminal:ATP/GTP-binding site motif A (P-loop)
[Brucella melitensis biovar Abortus 2308]
gi|189019693|gb|ACD72415.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
S19]
gi|237790210|gb|EEP64420.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
gi|260096784|gb|EEW80659.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
gi|260668223|gb|EEX55163.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260672159|gb|EEX58980.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|363400939|gb|AEW17909.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
A13334]
gi|374540723|gb|EHR12223.1| hypothetical protein M19_01208 [Brucella abortus bv. 1 str. NI474]
gi|374542573|gb|EHR14061.1| hypothetical protein M17_00641 [Brucella abortus bv. 1 str. NI435a]
gi|374542884|gb|EHR14369.1| hypothetical protein M1A_00643 [Brucella abortus bv. 1 str. NI486]
gi|374549951|gb|EHR21393.1| hypothetical protein M1G_01206 [Brucella abortus bv. 1 str. NI010]
gi|374550470|gb|EHR21909.1| hypothetical protein M1I_01207 [Brucella abortus bv. 1 str. NI016]
gi|374550754|gb|EHR22190.1| hypothetical protein M1E_01712 [Brucella abortus bv. 1 str. NI488]
gi|374558618|gb|EHR30011.1| hypothetical protein M1M_00642 [Brucella abortus bv. 1 str. NI259]
gi|374559616|gb|EHR31002.1| hypothetical protein M1K_00640 [Brucella abortus bv. 1 str. NI021]
Length = 482
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 66/97 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ EL SLT E+D LHGDMDQ R ++++ FK + R+LVA+DVAARGLDIP +
Sbjct: 259 DVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSH 318
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V N+D+ + + HRIGRTGRAG G A+T+VT D
Sbjct: 319 VFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSD 355
>gi|293334655|ref|NP_001168054.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
gi|223945725|gb|ACN26946.1| unknown [Zea mays]
gi|414876118|tpg|DAA53249.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 672
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/95 (52%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++LA +L+ ++Y +HGD Q+ER+SV+ F+ C +LVATDVAARGLDI IR VV
Sbjct: 416 DQLARNLS-RQYGASAIHGDKSQAERDSVLNDFRSGRCPVLVATDVAARGLDIKDIRIVV 474
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD ++ + HRIGRTGRAG G AYT D+D
Sbjct: 475 NYDFPTGVEDYVHRIGRTGRAGATGSAYTFFGDQD 509
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 29/43 (67%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAM 43
RAG G AYT D+D ++A LV+ LEGANQ VPP L +A+
Sbjct: 494 RAGATGSAYTFFGDQDSKYASELVKILEGANQSVPPQLKEMAL 536
>gi|428161491|gb|EKX30867.1| hypothetical protein GUITHDRAFT_83612, partial [Guillardia theta
CCMP2712]
Length = 464
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 65/94 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
NA+ L ++ + L +HGD Q+ER+ V+ +FK C+ILVATDVAARGLDI +R
Sbjct: 299 NADSLTRNMRQDGWPALAIHGDKQQAERDWVLQQFKSGACQILVATDVAARGLDIKDVRF 358
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
V+NYD+ + + HRIGRTGRAG +G AYTL T
Sbjct: 359 VINYDMPGCCEDYVHRIGRTGRAGAQGTAYTLYT 392
>gi|226357411|ref|YP_002787150.1| ATP-independent RNA helicase [Deinococcus deserti VCD115]
gi|226319401|gb|ACO47396.1| putative ATP-independent RNA helicase [Deinococcus deserti VCD115]
Length = 469
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 68/100 (68%)
Query: 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
+++ ELA L + + L LHGD++Q ER+ ++ F + C +LVATDVAARGLDI +
Sbjct: 252 RVHCRELAEELQAQGFSALGLHGDLEQRERDEILVLFSNRSCSVLVATDVAARGLDISRL 311
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
V+N D++RD + H HR+GRTGRAG G+A TL + +K
Sbjct: 312 DAVMNADVSRDTEVHVHRVGRTGRAGEAGLALTLCSPNEK 351
>gi|348030465|ref|YP_004873151.1| ATP-dependent RNA helicase DbpA [Glaciecola nitratireducens FR1064]
gi|347947808|gb|AEP31158.1| ATP-dependent RNA helicase DbpA [Glaciecola nitratireducens FR1064]
Length = 474
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL++ L + + LHGD++QSER+ V+ +F + +LVATDVAARGLDI + V+
Sbjct: 271 KELSDELYQMGFTAVGLHGDLEQSERSQVLARFANKTVSVLVATDVAARGLDIERVDLVI 330
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGEL 147
N+ ++ DIDTHTHRIGRTGRA KG+A TL+ D +++G+L
Sbjct: 331 NHRVSEDIDTHTHRIGRTGRAEEKGLAITLI-DDNEEGKL 369
>gi|148559195|ref|YP_001258911.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
gi|148370452|gb|ABQ60431.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
ATCC 25840]
Length = 482
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 66/97 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ EL SLT E+D LHGDMDQ R ++++ FK + R+LVA+DVAARGLDIP +
Sbjct: 259 DVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSH 318
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V N+D+ + + HRIGRTGRAG G A+T+VT D
Sbjct: 319 VFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSD 355
>gi|260777558|ref|ZP_05886451.1| ATP-dependent RNA helicase DbpA [Vibrio coralliilyticus ATCC
BAA-450]
gi|260605571|gb|EEX31856.1| ATP-dependent RNA helicase DbpA [Vibrio coralliilyticus ATCC
BAA-450]
Length = 458
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 71/96 (73%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+++ + L+ + + V+ +HGDM+Q ER +T F + ILVATDVAARGLD+ ++ V
Sbjct: 256 QKVTDELSHRGFSVVEIHGDMEQREREQALTMFANKSVSILVATDVAARGLDVDNLDAVF 315
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
N++L+RD + H HRIGRTGRAG+KGVA++ ++K++
Sbjct: 316 NFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEE 351
>gi|16126090|ref|NP_420654.1| DEAD/DEAH box helicase [Caulobacter crescentus CB15]
gi|221234860|ref|YP_002517296.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
gi|13423288|gb|AAK23822.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
crescentus CB15]
gi|220964032|gb|ACL95388.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
Length = 517
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 62/96 (64%)
Query: 50 LANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109
+A SL V YD +HGD+DQ++R + F+ +ILVA+DVAARGLDIP + V NY
Sbjct: 262 VAKSLKVHGYDAAPIHGDLDQTQRMKTLADFRSGALKILVASDVAARGLDIPAVSHVFNY 321
Query: 110 DLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145
D+ D + HRIGRTGRAG G+ Y LVT D G
Sbjct: 322 DVPHHADDYVHRIGRTGRAGRTGITYMLVTPADDKG 357
>gi|402224487|gb|EJU04549.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 486
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 82/138 (59%)
Query: 2 AGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDV 61
+ N + + D E G L+++L+ + E L+ + + A+++ L +
Sbjct: 275 SANPNIEQIVEVCSDFEKRGKLLKHLDKISNENAKVLIFVGTKRTADDITKYLRQDGWPA 334
Query: 62 LLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHR 121
L +HGD +Q ER+ V+++FK IL+ATDVA+RGLD+ + V+NYD +I+ + HR
Sbjct: 335 LAIHGDKEQRERDWVLSEFKASRSPILIATDVASRGLDVKDVGYVINYDFPNNIEDYIHR 394
Query: 122 IGRTGRAGNKGVAYTLVT 139
IGRTGRAGN GV+YT T
Sbjct: 395 IGRTGRAGNTGVSYTYFT 412
>gi|88797378|ref|ZP_01112968.1| Superfamily II DNA and RNA helicase [Reinekea blandensis MED297]
gi|88780247|gb|EAR11432.1| Superfamily II DNA and RNA helicase [Reinekea sp. MED297]
Length = 462
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 68/101 (67%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A+ L +D L LHGDM+Q +RN + +F +LVATDVAARGLDI + V+
Sbjct: 256 DEVADFLKQAGFDALALHGDMEQRQRNETLIRFANGSVSVLVATDVAARGLDIDKLDAVI 315
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELR 148
N+ +A+D + HTHRIGRTGRAG +G AY+ +K+ LR
Sbjct: 316 NFHIAKDPEVHTHRIGRTGRAGERGRAYSFFAEKEGHKLLR 356
>gi|261218712|ref|ZP_05932993.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M13/05/1]
gi|261314321|ref|ZP_05953518.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|261317582|ref|ZP_05956779.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261321790|ref|ZP_05960987.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M644/93/1]
gi|265988616|ref|ZP_06101173.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|340790566|ref|YP_004756031.1| ATP-dependent RNA helicase [Brucella pinnipedialis B2/94]
gi|260923801|gb|EEX90369.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M13/05/1]
gi|261294480|gb|EEX97976.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M644/93/1]
gi|261296805|gb|EEY00302.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261303347|gb|EEY06844.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|264660813|gb|EEZ31074.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|340559025|gb|AEK54263.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella
pinnipedialis B2/94]
Length = 482
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 66/97 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ EL SLT E+D LHGDMDQ R ++++ FK + R+LVA+DVAARGLDIP +
Sbjct: 259 DVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSH 318
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V N+D+ + + HRIGRTGRAG G A+T+VT D
Sbjct: 319 VFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSD 355
>gi|225627424|ref|ZP_03785461.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
gi|261222116|ref|ZP_05936397.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
B1/94]
gi|261758136|ref|ZP_06001845.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
gi|265998081|ref|ZP_06110638.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M490/95/1]
gi|225617429|gb|EEH14474.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
gi|260920700|gb|EEX87353.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
B1/94]
gi|261738120|gb|EEY26116.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
gi|262552549|gb|EEZ08539.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M490/95/1]
Length = 435
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 66/97 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ EL SLT E+D LHGDMDQ R ++++ FK + R+LVA+DVAARGLDIP +
Sbjct: 259 DVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSH 318
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V N+D+ + + HRIGRTGRAG G A+T+VT D
Sbjct: 319 VFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSD 355
>gi|22126413|ref|NP_669836.1| ATP-dependent RNA helicase DbpA [Yersinia pestis KIM10+]
gi|45441434|ref|NP_992973.1| ATP-dependent RNA helicase DbpA [Yersinia pestis biovar Microtus
str. 91001]
gi|108807144|ref|YP_651060.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Antiqua]
gi|108812508|ref|YP_648275.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Nepal516]
gi|145598635|ref|YP_001162711.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Pestoides F]
gi|149366275|ref|ZP_01888310.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
gi|162421745|ref|YP_001606136.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Angola]
gi|165928002|ref|ZP_02223834.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165938672|ref|ZP_02227227.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010820|ref|ZP_02231718.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166210580|ref|ZP_02236615.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167402150|ref|ZP_02307625.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167420322|ref|ZP_02312075.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425805|ref|ZP_02317558.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167467438|ref|ZP_02332142.1| ATP-independent RNA helicase DbpA [Yersinia pestis FV-1]
gi|218928898|ref|YP_002346773.1| ATP-dependent RNA helicase DbpA [Yersinia pestis CO92]
gi|229896216|ref|ZP_04511386.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
gi|229897150|ref|ZP_04512306.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229897877|ref|ZP_04513028.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229902891|ref|ZP_04518008.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
gi|270486675|ref|ZP_06203749.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
gi|294504053|ref|YP_003568115.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
gi|384122164|ref|YP_005504784.1| ATP-dependent RNA helicase [Yersinia pestis D106004]
gi|384126439|ref|YP_005509053.1| ATP-dependent RNA helicase [Yersinia pestis D182038]
gi|384140334|ref|YP_005523036.1| ATP-dependent RNA helicase DbpA [Yersinia pestis A1122]
gi|384414989|ref|YP_005624351.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|420546555|ref|ZP_15044532.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-01]
gi|420551885|ref|ZP_15049300.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-02]
gi|420557438|ref|ZP_15054189.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-03]
gi|420562932|ref|ZP_15059031.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-04]
gi|420567978|ref|ZP_15063609.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-05]
gi|420573680|ref|ZP_15068779.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-06]
gi|420578931|ref|ZP_15073539.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-07]
gi|420584281|ref|ZP_15078396.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-08]
gi|420589487|ref|ZP_15083084.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-09]
gi|420594788|ref|ZP_15087855.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-10]
gi|420600504|ref|ZP_15092959.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-11]
gi|420605904|ref|ZP_15097801.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-12]
gi|420611269|ref|ZP_15102644.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-13]
gi|420616641|ref|ZP_15107374.1| type III restriction enzyme, res subunit [Yersinia pestis PY-14]
gi|420621962|ref|ZP_15112101.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-15]
gi|420627044|ref|ZP_15116711.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-16]
gi|420632253|ref|ZP_15121406.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-19]
gi|420637365|ref|ZP_15125988.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-25]
gi|420642901|ref|ZP_15131006.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-29]
gi|420653758|ref|ZP_15140824.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-34]
gi|420659238|ref|ZP_15145751.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-36]
gi|420664560|ref|ZP_15150515.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-42]
gi|420669459|ref|ZP_15154960.1| type III restriction enzyme, res subunit [Yersinia pestis PY-45]
gi|420674798|ref|ZP_15159820.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-46]
gi|420680393|ref|ZP_15164886.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-47]
gi|420685677|ref|ZP_15169610.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-48]
gi|420690855|ref|ZP_15174185.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-52]
gi|420696655|ref|ZP_15179266.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-53]
gi|420702176|ref|ZP_15183876.1| type III restriction enzyme, res subunit [Yersinia pestis PY-54]
gi|420707916|ref|ZP_15188667.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-55]
gi|420713346|ref|ZP_15193533.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-56]
gi|420718773|ref|ZP_15198265.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-58]
gi|420724337|ref|ZP_15203079.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-59]
gi|420729938|ref|ZP_15208094.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-60]
gi|420734979|ref|ZP_15212652.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-61]
gi|420740446|ref|ZP_15217575.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-63]
gi|420745934|ref|ZP_15222327.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-64]
gi|420751590|ref|ZP_15227239.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-65]
gi|420757035|ref|ZP_15231837.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-66]
gi|420762738|ref|ZP_15236608.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-71]
gi|420767992|ref|ZP_15241345.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-72]
gi|420772962|ref|ZP_15245815.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-76]
gi|420783964|ref|ZP_15255513.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-89]
gi|420789223|ref|ZP_15260188.1| type III restriction enzyme, res subunit [Yersinia pestis PY-90]
gi|420794711|ref|ZP_15265132.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-91]
gi|420799758|ref|ZP_15269669.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-92]
gi|420805163|ref|ZP_15274545.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-93]
gi|420810444|ref|ZP_15279311.1| type III restriction enzyme, res subunit [Yersinia pestis PY-94]
gi|420816103|ref|ZP_15284397.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-95]
gi|420821315|ref|ZP_15289102.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-96]
gi|420826405|ref|ZP_15293659.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-98]
gi|420832181|ref|ZP_15298883.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-99]
gi|420836995|ref|ZP_15303226.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-100]
gi|420842153|ref|ZP_15307901.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-101]
gi|420847798|ref|ZP_15312984.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-102]
gi|420853266|ref|ZP_15317738.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-103]
gi|420858725|ref|ZP_15322435.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-113]
gi|421763253|ref|ZP_16200048.1| ATP-dependent RNA helicase DbpA [Yersinia pestis INS]
gi|21959402|gb|AAM86087.1|AE013856_1 ATP-dependent RNA helicase [Yersinia pestis KIM10+]
gi|45436295|gb|AAS61850.1| ATP-dependent RNA helicase [Yersinia pestis biovar Microtus str.
91001]
gi|108776156|gb|ABG18675.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
gi|108779057|gb|ABG13115.1| ATP-dependent RNA helicase [Yersinia pestis Antiqua]
gi|115347509|emb|CAL20417.1| ATP-dependent RNA helicase [Yersinia pestis CO92]
gi|145210331|gb|ABP39738.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides F]
gi|149292688|gb|EDM42762.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
gi|162354560|gb|ABX88508.1| ATP-independent RNA helicase DbpA [Yersinia pestis Angola]
gi|165913286|gb|EDR31908.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
Orientalis str. IP275]
gi|165920059|gb|EDR37360.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990164|gb|EDR42465.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166207760|gb|EDR52240.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166962017|gb|EDR58038.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167048425|gb|EDR59833.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167055204|gb|EDR65001.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229680338|gb|EEO76437.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
gi|229688918|gb|EEO80983.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229693487|gb|EEO83536.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229701139|gb|EEO89168.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
gi|262361760|gb|ACY58481.1| ATP-dependent RNA helicase [Yersinia pestis D106004]
gi|262366103|gb|ACY62660.1| ATP-dependent RNA helicase [Yersinia pestis D182038]
gi|270335179|gb|EFA45956.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
gi|294354512|gb|ADE64853.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
gi|320015493|gb|ADV99064.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|342855463|gb|AEL74016.1| ATP-dependent RNA helicase DbpA [Yersinia pestis A1122]
gi|391427501|gb|EIQ89582.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-01]
gi|391428919|gb|EIQ90826.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-02]
gi|391430285|gb|EIQ92022.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-03]
gi|391442940|gb|EIR03306.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-04]
gi|391444405|gb|EIR04630.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-05]
gi|391447428|gb|EIR07344.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-06]
gi|391459861|gb|EIR18606.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-07]
gi|391460982|gb|EIR19632.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-08]
gi|391462884|gb|EIR21343.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-09]
gi|391475990|gb|EIR33146.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-10]
gi|391477568|gb|EIR34575.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-11]
gi|391477973|gb|EIR34942.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-12]
gi|391492014|gb|EIR47520.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-13]
gi|391492940|gb|EIR48336.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-15]
gi|391494904|gb|EIR50075.1| type III restriction enzyme, res subunit [Yersinia pestis PY-14]
gi|391507704|gb|EIR61508.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-16]
gi|391507985|gb|EIR61767.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-19]
gi|391512673|gb|EIR65970.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-25]
gi|391523162|gb|EIR75496.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-29]
gi|391525824|gb|EIR77932.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-34]
gi|391538896|gb|EIR89659.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-36]
gi|391541414|gb|EIR91957.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-42]
gi|391542930|gb|EIR93314.1| type III restriction enzyme, res subunit [Yersinia pestis PY-45]
gi|391556736|gb|EIS05798.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-46]
gi|391557093|gb|EIS06120.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-47]
gi|391558262|gb|EIS07162.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-48]
gi|391571851|gb|EIS19155.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-52]
gi|391572486|gb|EIS19713.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-53]
gi|391581311|gb|EIS27211.1| type III restriction enzyme, res subunit [Yersinia pestis PY-54]
gi|391584539|gb|EIS30055.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-55]
gi|391587739|gb|EIS32870.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-56]
gi|391600470|gb|EIS43999.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-58]
gi|391601173|gb|EIS44618.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-60]
gi|391602764|gb|EIS46023.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-59]
gi|391615668|gb|EIS57409.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-61]
gi|391616479|gb|EIS58133.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-63]
gi|391621966|gb|EIS62948.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-64]
gi|391627683|gb|EIS67863.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-65]
gi|391638323|gb|EIS77138.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-66]
gi|391638797|gb|EIS77559.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-71]
gi|391641131|gb|EIS79591.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-72]
gi|391650901|gb|EIS88140.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-76]
gi|391660378|gb|EIS96547.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-89]
gi|391664176|gb|EIS99935.1| type III restriction enzyme, res subunit [Yersinia pestis PY-90]
gi|391671153|gb|EIT06126.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-91]
gi|391681785|gb|EIT15716.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-93]
gi|391683327|gb|EIT17115.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-92]
gi|391684002|gb|EIT17726.1| type III restriction enzyme, res subunit [Yersinia pestis PY-94]
gi|391695533|gb|EIT28093.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-95]
gi|391699005|gb|EIT31240.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-96]
gi|391700324|gb|EIT32429.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-98]
gi|391709667|gb|EIT40820.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-99]
gi|391716378|gb|EIT46833.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-100]
gi|391717203|gb|EIT47591.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-101]
gi|391728117|gb|EIT57262.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-102]
gi|391730647|gb|EIT59453.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-103]
gi|391735419|gb|EIT63564.1| ATP-independent RNA helicase dbpA [Yersinia pestis PY-113]
gi|411176154|gb|EKS46174.1| ATP-dependent RNA helicase DbpA [Yersinia pestis INS]
Length = 460
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + SL + VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+N++LA D + H HRIGRTGRAG G+A +L T ++
Sbjct: 314 VINFELAFDPEIHIHRIGRTGRAGMSGLAVSLCTPQE 350
>gi|89095451|ref|ZP_01168362.1| RNA helicase DbpA [Neptuniibacter caesariensis]
gi|89080281|gb|EAR59542.1| RNA helicase DbpA [Oceanospirillum sp. MED92]
Length = 301
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 67/108 (62%), Gaps = 2/108 (1%)
Query: 32 QEVPP--ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILV 89
Q+ P A++ M+ ++ L + Y +HGD+DQ ER ++ +F + C L+
Sbjct: 80 QQFQPEFAVIFCNMKQTCTQVQQFLRSQGYSANAIHGDLDQREREQMLVQFANRSCNFLI 139
Query: 90 ATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTL 137
ATDVAARGLDI + V+NYDL RD + HTHRIGRTGRAG G+A L
Sbjct: 140 ATDVAARGLDIEELPCVINYDLTRDAEVHTHRIGRTGRAGKSGIALNL 187
>gi|343502081|ref|ZP_08739943.1| ATP-dependent RNA helicase DbpA [Vibrio tubiashii ATCC 19109]
gi|418478069|ref|ZP_13047184.1| ATP-dependent RNA helicase DbpA [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342815660|gb|EGU50573.1| ATP-dependent RNA helicase DbpA [Vibrio tubiashii ATCC 19109]
gi|384574344|gb|EIF04816.1| ATP-dependent RNA helicase DbpA [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 458
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 70/96 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ + + L+ + + V+ LHGDM+Q ER +T F + ILVATDVAARGLD+ ++ V
Sbjct: 256 QNVTDELSHRGFSVVELHGDMEQREREQALTMFANKSISILVATDVAARGLDVDNLDAVF 315
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
N++L+RD + H HRIGRTGRAG+KGVA++ ++K++
Sbjct: 316 NFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEE 351
>gi|88860789|ref|ZP_01135426.1| putative ATP-dependent RNA helicase DbpA [Pseudoalteromonas
tunicata D2]
gi|88817384|gb|EAR27202.1| putative ATP-dependent RNA helicase DbpA [Pseudoalteromonas
tunicata D2]
Length = 460
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 69/99 (69%)
Query: 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
++ + +A+ L V + VL LHG+++Q ER+ + +F + ILVATDVAARGLDI +
Sbjct: 253 RVETQAVADELAVSGFSVLALHGELEQRERDQTLVRFANKSISILVATDVAARGLDINEL 312
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+NY + +D + H HRIGRTGRAG+KG A++L TD +
Sbjct: 313 DMVINYHITQDPEVHVHRIGRTGRAGSKGTAHSLFTDNE 351
>gi|237796237|ref|YP_002863789.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum Ba4 str. 657]
gi|229263626|gb|ACQ54659.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Ba4 str. 657]
Length = 524
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 87/134 (64%), Gaps = 4/134 (2%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
Y V +KDK A L R ++ ++E A++ + +EL ++ K Y+V +HGDM
Sbjct: 224 YFAVKNKDKLEA--LCRIID--SEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDM 279
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
Q++R + + KFK+ LVATDVAARG+D+ +I V+NYD+ +D +++ HRIGRTGRA
Sbjct: 280 SQNQRINTLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRA 339
Query: 129 GNKGVAYTLVTDKD 142
+G AY+LVT ++
Sbjct: 340 DKEGTAYSLVTPRE 353
>gi|387814726|ref|YP_005430213.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381339743|emb|CCG95790.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 457
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/96 (52%), Positives = 67/96 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +EL++ L + L LHGD+DQ ER+S + +F Q C +LVATDVAARGLDI +
Sbjct: 252 DCDELSDELGRLGFSALSLHGDLDQRERDSALVRFANQSCTVLVATDVAARGLDIKGLPL 311
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141
V+N + ARD + HTHR+GRTGRAG +G A TL T +
Sbjct: 312 VINAEPARDPEVHTHRVGRTGRAGEQGHAVTLCTPR 347
>gi|347539605|ref|YP_004847030.1| ATP-dependent RNA helicase DbpA [Pseudogulbenkiania sp. NH8B]
gi|345642783|dbj|BAK76616.1| ATP-dependent RNA helicase DbpA [Pseudogulbenkiania sp. NH8B]
Length = 460
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 65/94 (69%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
ELAN L + + L L+G+++Q ER+ ++ +F + C +LVATDVAARGLDI + V+N
Sbjct: 257 ELANELQQQGFSALALYGELEQRERDEILVQFANRSCSVLVATDVAARGLDISTLEAVIN 316
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
DL+ D + H HRIGRTGR G KG+A +LV D
Sbjct: 317 VDLSHDPEIHIHRIGRTGRGGEKGLALSLVGPND 350
>gi|291241720|ref|XP_002740759.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
[Saccoglossus kowalevskii]
Length = 1091
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 76/128 (59%), Gaps = 2/128 (1%)
Query: 12 VTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQS 71
+ D D++F L L G QE L+ + Q A++L L Y L LHG +DQ
Sbjct: 651 IVDDDQKFLTLL--ELLGVYQEQGSVLVFVEKQEGADQLLKDLMKASYSCLSLHGGIDQY 708
Query: 72 ERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNK 131
+R+S I FK ++L+AT VAARGLD+ H+ VVNYD + + HR+GRTGRAGNK
Sbjct: 709 DRDSAIQDFKAGNIKLLIATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRVGRTGRAGNK 768
Query: 132 GVAYTLVT 139
G A+T +T
Sbjct: 769 GNAFTFIT 776
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYD 60
RAGNKG A+T +T + +AG +++ E A+++ PP L+ L + ++ A ++ +
Sbjct: 764 RAGNKGNAFTFITPEQGRYAGDIIKAFEMADKKAPPELLQLWSEFTEKQKAEGKSIMKSS 823
Query: 61 VLLLHG-DMDQSERNSVITKFKRQECRI-LVATDVAARGLDI 100
G D++E+ K K Q+ + L +D G+DI
Sbjct: 824 GFSGKGFKFDETEKELANEKKKLQKAALGLQDSDEEDAGVDI 865
>gi|168183134|ref|ZP_02617798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
gi|182673701|gb|EDT85662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
Length = 524
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 87/134 (64%), Gaps = 4/134 (2%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
Y V +KDK A L R ++ ++E A++ + +EL ++ K Y+V +HGDM
Sbjct: 224 YFAVKNKDKLEA--LCRIID--SEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDM 279
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
Q++R + + KFK+ LVATDVAARG+D+ +I V+NYD+ +D +++ HRIGRTGRA
Sbjct: 280 SQNQRINTLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRA 339
Query: 129 GNKGVAYTLVTDKD 142
+G AY+LVT ++
Sbjct: 340 DKEGTAYSLVTPRE 353
>gi|334144304|ref|YP_004537460.1| DEAD/DEAH box helicase domain-containing protein
[Thioalkalimicrobium cyclicum ALM1]
gi|333965215|gb|AEG31981.1| DEAD/DEAH box helicase domain protein [Thioalkalimicrobium cyclicum
ALM1]
Length = 464
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 71/97 (73%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+A+ +A++L +DV LHGD++Q ER+ + +F + +LVATDVAARGLDI +
Sbjct: 259 DAQMVADALHKVGFDVAALHGDLEQRERDQTLIQFANKSIAVLVATDVAARGLDIDALDA 318
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+N+ LA D + H HRIGRTGRAG+KG+A +L++DK+
Sbjct: 319 VINFHLAHDPEIHVHRIGRTGRAGSKGLAASLISDKE 355
>gi|331005214|ref|ZP_08328607.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC1989]
gi|330420957|gb|EGG95230.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC1989]
Length = 462
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 67/96 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A+ L + + L+GDM+Q R+ + +F ILVATDVAARGLDI + V
Sbjct: 257 QEVADELARMGFAAVALNGDMEQKMRDQTLVRFANNSASILVATDVAARGLDIDDLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
NY L+R+ID HTHRIGRTGRAG+KG A+TL T K++
Sbjct: 317 NYQLSREIDVHTHRIGRTGRAGSKGHAFTLYTSKER 352
>gi|157371044|ref|YP_001479033.1| ATP-dependent RNA helicase DbpA [Serratia proteamaculans 568]
gi|157322808|gb|ABV41905.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
Length = 460
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + +VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVYEALESRGINVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVNY+LA D + H HRIGRTGRAG G A +L T ++
Sbjct: 314 VVNYELAFDPEVHVHRIGRTGRAGLSGKAISLCTPQE 350
>gi|441502769|ref|ZP_20984776.1| ATP-dependent 23S rRNA helicase DbpA [Photobacterium sp. AK15]
gi|441428985|gb|ELR66440.1| ATP-dependent 23S rRNA helicase DbpA [Photobacterium sp. AK15]
Length = 462
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A+ L + + LHGD++Q +R+ + +F + +LVATDVAARGLDI + VV
Sbjct: 257 QEVADELEHYGFSAIALHGDLEQRDRDQTLVRFANKSASVLVATDVAARGLDIESLDAVV 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NY +ARD + H HRIGRTGRAG+KGVA + +DK+
Sbjct: 317 NYHMARDTEVHVHRIGRTGRAGSKGVACSFFSDKE 351
>gi|168180793|ref|ZP_02615457.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226950212|ref|YP_002805303.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum A2 str. Kyoto]
gi|182668220|gb|EDT80199.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226841562|gb|ACO84228.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A2 str. Kyoto]
Length = 524
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 87/134 (64%), Gaps = 4/134 (2%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
Y V +KDK A L R ++ ++E A++ + +EL ++ K Y+V +HGDM
Sbjct: 224 YFAVKNKDKLEA--LCRIID--SEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDM 279
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
Q++R + + KFK+ LVATDVAARG+D+ +I V+NYD+ +D +++ HRIGRTGRA
Sbjct: 280 SQNQRINTLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRA 339
Query: 129 GNKGVAYTLVTDKD 142
+G AY+LVT ++
Sbjct: 340 DKEGTAYSLVTPRE 353
>gi|353328381|ref|ZP_08970708.1| ATP-dependent RNA helicase, DeaD/DeaH box family protein [Wolbachia
endosymbiont wVitB of Nasonia vitripennis]
Length = 408
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 68/97 (70%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A++LA+ L +Y L +HGD+ Q +R VI F+R +I+VATDVA+RGLDIPHI+ V
Sbjct: 253 ADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMVATDVASRGLDIPHIQHV 312
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+NYD+ + + HRIGRT RAG +G A + VT +DK
Sbjct: 313 INYDVPQSQADYVHRIGRTARAGAEGFALSFVTPQDK 349
>gi|327278500|ref|XP_003224000.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Anolis
carolinensis]
Length = 1030
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 78/130 (60%), Gaps = 2/130 (1%)
Query: 11 LVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQ 70
+V +++ +F L L G QE ++ + Q +A+ L L Y L LHG +DQ
Sbjct: 596 IVIEEENKFLKLL--ELLGHFQEQGAVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQ 653
Query: 71 SERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130
+R+S+I FK C++LVAT VAARGLD+ H+ V+NY + + HR GRTGRAGN
Sbjct: 654 YDRDSIINDFKSGVCKLLVATSVAARGLDVKHLMLVINYSCPNHYEDYVHRAGRTGRAGN 713
Query: 131 KGVAYTLVTD 140
KG AYT +T+
Sbjct: 714 KGYAYTFITE 723
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK 57
RAGNKG AYT +T+ +AG +++ LE + VP L L ++ A T+K
Sbjct: 710 RAGNKGYAYTFITEDQARYAGDIIKALELSGTPVPSELEKLWNDFKDQQKAEGKTIK 766
>gi|224825377|ref|ZP_03698482.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224602298|gb|EEG08476.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 460
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 65/94 (69%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
ELAN L + + L L+G+++Q ER+ ++ +F + C +LVATDVAARGLDI + V+N
Sbjct: 257 ELANELQQQGFSALALYGELEQRERDEILVQFANRSCSVLVATDVAARGLDISTLEAVIN 316
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
DL+ D + H HRIGRTGR G KG+A +LV D
Sbjct: 317 VDLSHDPEIHIHRIGRTGRGGEKGLALSLVGPND 350
>gi|57899404|dbj|BAD88051.1| putative ATP-dependent RNA helicase DB10 [Oryza sativa Japonica
Group]
gi|215694706|dbj|BAG89897.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 583
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
++LA +LT +++ +HGD QSER V++ F+ ILVATDVAARGLDI IR V
Sbjct: 199 CDQLARTLT-RQFGASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVV 257
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+NYD I+ + HRIGRTGRAG GVAYT D+D
Sbjct: 258 INYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQD 293
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG GVAYT D+D ++A L++ LEGANQ VP L ++A
Sbjct: 278 RAGATGVAYTFFCDQDSKYAADLIKILEGANQRVPRDLADMA 319
>gi|238783457|ref|ZP_04627480.1| ATP-independent RNA helicase dbpA [Yersinia bercovieri ATCC 43970]
gi|238715702|gb|EEQ07691.1| ATP-independent RNA helicase dbpA [Yersinia bercovieri ATCC 43970]
Length = 511
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 305 DCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLEL 364
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG G+A +L T ++
Sbjct: 365 VVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQE 401
>gi|302801267|ref|XP_002982390.1| hypothetical protein SELMODRAFT_116186 [Selaginella moellendorffii]
gi|300149982|gb|EFJ16635.1| hypothetical protein SELMODRAFT_116186 [Selaginella moellendorffii]
Length = 577
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 52/125 (41%), Positives = 75/125 (60%)
Query: 23 LVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82
+V LE Q PP L+ + + + + L +K +V+ +HG DQ ER ITKFK+
Sbjct: 382 MVYLLECLQQTPPPVLIFCESKGDVDSIYEYLVLKGVEVVSIHGGKDQEERQDAITKFKQ 441
Query: 83 QECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+LVATDVA++GLD P I+ V+NYD+ +I+ + HRIGRTGR G G+A T + K
Sbjct: 442 GRKDVLVATDVASKGLDFPSIQHVINYDMPSEIENYVHRIGRTGRCGKTGIATTFINSKQ 501
Query: 143 KDGEL 147
+ L
Sbjct: 502 SESTL 506
>gi|392954165|ref|ZP_10319717.1| ATP-dependent RNA helicase DbpA [Hydrocarboniphaga effusa AP103]
gi|391858064|gb|EIT68594.1| ATP-dependent RNA helicase DbpA [Hydrocarboniphaga effusa AP103]
Length = 472
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 67/97 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+A+ + L + Y VL LHGD+DQ +R+ V+ +F R+LVATD+AARGLDIP++
Sbjct: 266 DAQTVEQQLAKRGYAVLALHGDIDQRDRDEVLVRFTNGSARVLVATDIAARGLDIPNLAA 325
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V++Y+L D D H HR+GRTGRAG G+A L + ++
Sbjct: 326 VISYELPADPDAHVHRVGRTGRAGRSGLALHLFSHRE 362
>gi|430749671|ref|YP_007212579.1| DNA/RNA helicase [Thermobacillus composti KWC4]
gi|430733636|gb|AGA57581.1| DNA/RNA helicase, superfamily II [Thermobacillus composti KWC4]
Length = 517
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 71/97 (73%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +L + Y LHGD+ Q++R++V+ KF+ +LVATDVAARGLD+ + V+
Sbjct: 254 DELSEALQKRGYSADGLHGDLSQNQRDTVMRKFRDGSIDVLVATDVAARGLDVSGVTHVI 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+DL +D +++ HRIGRTGRAG +GVAYT VT ++ D
Sbjct: 314 NFDLPQDPESYVHRIGRTGRAGKEGVAYTFVTPREID 350
>gi|238755823|ref|ZP_04617154.1| ATP-independent RNA helicase dbpA [Yersinia ruckeri ATCC 29473]
gi|238705981|gb|EEP98367.1| ATP-independent RNA helicase dbpA [Yersinia ruckeri ATCC 29473]
Length = 434
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + ++L + VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 228 DCQSVYDTLESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAARGLDIKDLEL 287
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG G+A +L T +
Sbjct: 288 VVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPSE 324
>gi|332162007|ref|YP_004298584.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325666237|gb|ADZ42881.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 460
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG G+A +L T ++
Sbjct: 314 VVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQE 350
>gi|123442077|ref|YP_001006060.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122089038|emb|CAL11856.1| ATP-dependent RNA helicase [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 460
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG G+A +L T ++
Sbjct: 314 VVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQE 350
>gi|414881885|tpg|DAA59016.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 711
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
++LA +LT +++ +HGD QSER V+ +F+ ILVATDVAARGLDI IR V
Sbjct: 408 CDQLARTLT-RQFGASAIHGDKSQSEREKVLNQFRSGRSPILVATDVAARGLDIKDIRVV 466
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+NYD ++ + HRIGRTGRAG GVAYT D+D
Sbjct: 467 INYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQD 502
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG GVAYT D+D ++A L++ LEGANQ VP L ++A
Sbjct: 487 RAGATGVAYTFFCDQDSKYAADLIKILEGANQRVPRDLEDMA 528
>gi|420258816|ref|ZP_14761541.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|404513682|gb|EKA27492.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
enterocolitica WA-314]
Length = 460
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG G+A +L T ++
Sbjct: 314 VVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQE 350
>gi|190571463|ref|YP_001975821.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|190357735|emb|CAQ55186.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
Length = 408
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 68/97 (70%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A++LA+ L +Y L +HGD+ Q +R VI F+R +I+VATDVA+RGLDIPHI+ V
Sbjct: 253 ADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMVATDVASRGLDIPHIQHV 312
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+NYD+ + + HRIGRT RAG +G A + VT +DK
Sbjct: 313 INYDVPQSQADYVHRIGRTARAGAEGFALSFVTPQDK 349
>gi|386308083|ref|YP_006004139.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418242420|ref|ZP_12868931.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433549869|ref|ZP_20505913.1| ATP-dependent 23S rRNA helicase DbpA [Yersinia enterocolitica IP
10393]
gi|318606043|emb|CBY27541.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
palearctica Y11]
gi|351778148|gb|EHB20318.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431789004|emb|CCO68953.1| ATP-dependent 23S rRNA helicase DbpA [Yersinia enterocolitica IP
10393]
Length = 460
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG G+A +L T ++
Sbjct: 314 VVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQE 350
>gi|167752241|ref|ZP_02424368.1| hypothetical protein ALIPUT_00483 [Alistipes putredinis DSM 17216]
gi|167660482|gb|EDS04612.1| DEAD/DEAH box helicase [Alistipes putredinis DSM 17216]
Length = 650
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 84/142 (59%), Gaps = 16/142 (11%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYD 60
R G+K A T + D + EF G ++ + A+++ L + Y
Sbjct: 226 REGDKFDALTRIIDVEPEFYG----------------IVFSRTRTGADDIVAKLLERGYA 269
Query: 61 VLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTH 120
+LHGD+ Q++R ++ KFK+++ ILVATDVAARG+D+ ++ V+NY L +D D++ H
Sbjct: 270 AEVLHGDISQAQREKILGKFKKKQVNILVATDVAARGIDVSNLTHVINYSLPQDSDSYVH 329
Query: 121 RIGRTGRAGNKGVAYTLVTDKD 142
RIGRTGRAGN+G A T ++ +
Sbjct: 330 RIGRTGRAGNQGTAITFISPSE 351
>gi|162447297|ref|YP_001620429.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A]
gi|161985404|gb|ABX81053.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A]
Length = 547
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 82/132 (62%), Gaps = 4/132 (3%)
Query: 8 AYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGD 67
AY LV +K+K+ L R L+ N A++ + + A+ + SL + LHGD
Sbjct: 220 AYFLVKEKEKQ--SLLERLLDFENPST--AIIFVNTKAGADRITESLQKAGFTADALHGD 275
Query: 68 MDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGR 127
+ QS+R V+ +F+ ++ ILVATDVAARGLD+ + +VNYDL + + + HRIGRTGR
Sbjct: 276 LKQSQRTYVMNRFRSKQLSILVATDVAARGLDVDDVEIIVNYDLPQQDEIYVHRIGRTGR 335
Query: 128 AGNKGVAYTLVT 139
AG KG A+T VT
Sbjct: 336 AGKKGKAFTFVT 347
>gi|238798166|ref|ZP_04641653.1| ATP-independent RNA helicase dbpA [Yersinia mollaretii ATCC 43969]
gi|238718020|gb|EEQ09849.1| ATP-independent RNA helicase dbpA [Yersinia mollaretii ATCC 43969]
Length = 460
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG G+A +L T ++
Sbjct: 314 VVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQE 350
>gi|50122015|ref|YP_051182.1| ATP-dependent RNA helicase DbpA [Pectobacterium atrosepticum
SCRI1043]
gi|49612541|emb|CAG75991.1| ATP-independent RNA helicase [Pectobacterium atrosepticum SCRI1043]
Length = 460
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 69/97 (71%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L ++ V LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVFEALEMRGISVSALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAARGLDIKELAL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG +G+A +L T ++
Sbjct: 314 VVNFELAFDPEVHVHRIGRTGRAGTQGLAVSLCTPQE 350
>gi|255089378|ref|XP_002506611.1| predicted protein [Micromonas sp. RCC299]
gi|226521883|gb|ACO67869.1| predicted protein [Micromonas sp. RCC299]
Length = 639
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/96 (51%), Positives = 65/96 (67%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A++L + L+ + + +HGD Q ER + F+ + ILVATDVAARGLDIPH+ V
Sbjct: 449 ADQLEDWLSQQGFPSTSIHGDRTQQEREWALKSFRSGKTPILVATDVAARGLDIPHVTHV 508
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+N+DL D+D + HRIGRTGRAG KG+A TDKD
Sbjct: 509 INFDLPSDVDDYVHRIGRTGRAGKKGLATAFFTDKD 544
Score = 38.9 bits (89), Expect = 0.74, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 23/42 (54%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG KG+A TDKD A LV L ANQ+VP L A
Sbjct: 529 RAGKKGLATAFFTDKDSSLARGLVEILSEANQDVPSFLNGFA 570
>gi|83858471|ref|ZP_00951993.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
gi|83853294|gb|EAP91146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
Length = 480
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 64/93 (68%)
Query: 50 LANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109
+A SL + +HGD+DQS+R + +FK E R+LVA+DVAARGLDIP + V N
Sbjct: 261 VARSLQRHGFSAAPIHGDLDQSQRTKTLAEFKSGELRLLVASDVAARGLDIPAVSHVFNV 320
Query: 110 DLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
D+ R+ D + HRIGRTGRAG KG A TLV+ +D
Sbjct: 321 DIPRNADDYVHRIGRTGRAGQKGEAVTLVSSED 353
>gi|113477200|ref|YP_723261.1| DEAD/DEAH box helicase [Trichodesmium erythraeum IMS101]
gi|110168248|gb|ABG52788.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101]
Length = 495
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 73/107 (68%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ + + A EL N L + V HG+++QS+R ++T+F+ Q+ R +VATD+AAR
Sbjct: 252 ALIFVRTRQAAAELTNQLQSAGHSVDEYHGNLNQSQRERLLTRFRNQQVRWVVATDIAAR 311
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
GLD+ H+ V+NYDL +D++ HRIGRTGRAG +G A +L+ DK
Sbjct: 312 GLDVDHLTHVINYDLPDSVDSYVHRIGRTGRAGREGTAISLIHPVDK 358
>gi|440468040|gb|ELQ37225.1| ATP-dependent RNA helicase ded-1 [Magnaporthe oryzae Y34]
gi|440487534|gb|ELQ67318.1| ATP-dependent RNA helicase ded-1 [Magnaporthe oryzae P131]
Length = 665
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 52/108 (48%), Positives = 67/108 (62%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NA+EL++ L + +HGD Q ER + F+ C ILVAT VAARG
Sbjct: 447 LIFVETKRNADELSDFLQNQNLPATSIHGDRTQRERERALEMFRTGRCPILVATAVAARG 506
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145
LDIP++ V+NYDL DID + HRIGRTGRAGN G+A KD G
Sbjct: 507 LDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFDMKDNSG 554
>gi|149191663|ref|ZP_01869906.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1]
gi|148834504|gb|EDL51498.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1]
Length = 460
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 70/95 (73%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A+ L + + V+ +HGD++Q +R+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADELHHRGFSVIDIHGDLEQRDRDQALVQFANKSVSILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL+RD + H HRIGRTGRAGNKG+A++ ++K+
Sbjct: 317 NYDLSRDPEVHVHRIGRTGRAGNKGLAFSFYSEKE 351
>gi|86133373|ref|ZP_01051955.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
gi|85820236|gb|EAQ41383.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
Length = 606
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 76/101 (75%), Gaps = 1/101 (0%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A++L Y+ LHGD+ Q++R+SV+ KF+++ +ILVATDVAARGLD+ + V+
Sbjct: 256 QEVADNLIKDGYNADSLHGDLSQAQRDSVMGKFRKKTIQILVATDVAARGLDVTELTHVI 315
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELR 148
N+ L I+ +THR GRTGRAGNKGV+ LV +++K G+LR
Sbjct: 316 NHKLPDQIENYTHRSGRTGRAGNKGVSIVLVNNREK-GKLR 355
>gi|399018220|ref|ZP_10720404.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
gi|398101856|gb|EJL92056.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
Length = 466
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 67/100 (67%)
Query: 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
+++ ELA L + + L L+GD++Q ER+ ++ +F Q C +LVATDVAARGLDI ++
Sbjct: 256 KIHCRELAEELRAQGFSALALYGDLEQRERDEILVQFANQSCSVLVATDVAARGLDIANL 315
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
V+N D+ RD + H HRIGRTGR +KG+A L +K
Sbjct: 316 SAVINVDVTRDTEVHIHRIGRTGRGQDKGLALNLCIPTEK 355
>gi|213018866|ref|ZP_03334674.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
gi|212995817|gb|EEB56457.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
Length = 402
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 68/97 (70%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A++LA+ L +Y L +HGD+ Q +R VI F+R +I+VATDVA+RGLDIPHI+ V
Sbjct: 247 ADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMVATDVASRGLDIPHIQHV 306
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+NYD+ + + HRIGRT RAG +G A + VT +DK
Sbjct: 307 INYDVPQSQADYVHRIGRTARAGAEGFALSFVTPQDK 343
>gi|440804129|gb|ELR25007.1| DEAD/DEAH box helicase domain containing protein, partial
[Acanthamoeba castellanii str. Neff]
Length = 597
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 70/105 (66%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + A++L N L + + V +HGD Q ER + +T F+ ILVATDVAARG
Sbjct: 409 LIFVQTKRGADQLENFLYREGFPVASIHGDRTQREREAALTSFRSGRTPILVATDVAARG 468
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
LDIP++ V+NYDL +ID + HRIGRTGRAGN G+ V+++D
Sbjct: 469 LDIPNVLHVINYDLPTNIDDYVHRIGRTGRAGNTGLTTAFVSERD 513
>gi|352684524|ref|YP_004896509.1| DEAD/DEAH box helicase [Acidaminococcus intestini RyC-MR95]
gi|350279179|gb|AEQ22369.1| DEAD/DEAH helicase [Acidaminococcus intestini RyC-MR95]
Length = 537
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 71/95 (74%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL +L + Y+ LHGD+ Q++R+ V+ KF++ + ILVATDVAARG+DI +I VV
Sbjct: 262 DELVIALATRGYEAEGLHGDLSQTQRDRVMKKFRQDQVDILVATDVAARGIDIDNITHVV 321
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D +++ HRIGRTGRAGN GVA T +T ++
Sbjct: 322 NFDVPQDPESYVHRIGRTGRAGNTGVALTFITPRE 356
>gi|421080223|ref|ZP_15541157.1| ATP-independent RNA helicase DbpA [Pectobacterium wasabiae CFBP
3304]
gi|401705076|gb|EJS95265.1| ATP-independent RNA helicase DbpA [Pectobacterium wasabiae CFBP
3304]
Length = 490
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 70/97 (72%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + ++L ++ V LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 284 DCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELAL 343
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG +G+A +L T ++
Sbjct: 344 VVNFELAFDPEVHVHRIGRTGRAGTQGLAVSLCTPQE 380
>gi|385870891|gb|AFI89411.1| ATP-independent RNA helicase DbpA [Pectobacterium sp. SCC3193]
Length = 490
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 70/97 (72%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + ++L ++ V LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 284 DCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELAL 343
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG +G+A +L T ++
Sbjct: 344 VVNFELAFDPEVHVHRIGRTGRAGTQGLAVSLCTPQE 380
>gi|238789022|ref|ZP_04632811.1| ATP-independent RNA helicase dbpA [Yersinia frederiksenii ATCC
33641]
gi|238722786|gb|EEQ14437.1| ATP-independent RNA helicase dbpA [Yersinia frederiksenii ATCC
33641]
Length = 460
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVFEALESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAARGLDIKDLAL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG G+A +L T ++
Sbjct: 314 VVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQE 350
>gi|440295406|gb|ELP88319.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba invadens
IP1]
Length = 571
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 48/98 (48%), Positives = 70/98 (71%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+ L N L K Y V +HGD QS+R+ + +FK + ++LVATDVA+RGLDIP I V
Sbjct: 390 ADMLENYLYDKGYMVDSIHGDRSQSDRDFSLARFKENKIQLLVATDVASRGLDIPDIEIV 449
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYD+ +I+++ HR+GRTGRAG KG+A T + +K ++
Sbjct: 450 INYDMPNEIESYVHRVGRTGRAGKKGIAVTFINEKTQN 487
>gi|300692069|ref|YP_003753064.1| bifunctional DEAD/DEAH box helicase/ATP dependent RNA helicase
[Ralstonia solanacearum PSI07]
gi|299079129|emb|CBJ51797.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal) (rhlE-like) [Ralstonia
solanacearum PSI07]
Length = 614
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 68/106 (64%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA LT + LHGDM Q RN +T +R + R+LVATDVAAR
Sbjct: 296 AIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNRTLTALRRGQLRVLVATDVAAR 355
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG G+A LV D
Sbjct: 356 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 401
>gi|241662507|ref|YP_002980867.1| DEAD/DEAH box helicase [Ralstonia pickettii 12D]
gi|240864534|gb|ACS62195.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
Length = 627
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 68/106 (64%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA LT + LHGDM Q RN +T +R + R+LVATDVAAR
Sbjct: 299 AIVFTATKRDADSLAERLTEHGFSAGALHGDMHQGARNRTLTALRRGQLRVLVATDVAAR 358
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG G+A LV D
Sbjct: 359 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHND 404
>gi|114564377|ref|YP_751891.1| ATP-dependent RNA helicase DbpA [Shewanella frigidimarina NCIMB
400]
gi|114335670|gb|ABI73052.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 467
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+++A+SL + VL LHGD++Q +R+ ++ +F + RILVATDVAARGLDI + V
Sbjct: 264 QQVADSLHEFGFSVLALHGDLEQRDRDQMLLQFANRSARILVATDVAARGLDIDELDAVF 323
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NY +A D + H HRIGRTGRAG+ G AYT ++D
Sbjct: 324 NYHIAYDTEVHIHRIGRTGRAGSSGAAYTFFGEED 358
>gi|389635125|ref|XP_003715215.1| ATP-dependent RNA helicase DED1 [Magnaporthe oryzae 70-15]
gi|152013501|sp|A4RHF1.2|DED1_MAGO7 RecName: Full=ATP-dependent RNA helicase DED1
gi|351647548|gb|EHA55408.1| ATP-dependent RNA helicase DED1 [Magnaporthe oryzae 70-15]
Length = 671
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 52/108 (48%), Positives = 67/108 (62%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NA+EL++ L + +HGD Q ER + F+ C ILVAT VAARG
Sbjct: 453 LIFVETKRNADELSDFLQNQNLPATSIHGDRTQRERERALEMFRTGRCPILVATAVAARG 512
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145
LDIP++ V+NYDL DID + HRIGRTGRAGN G+A KD G
Sbjct: 513 LDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFDMKDNSG 560
>gi|238762292|ref|ZP_04623264.1| ATP-independent RNA helicase dbpA [Yersinia kristensenii ATCC
33638]
gi|238699639|gb|EEP92384.1| ATP-independent RNA helicase dbpA [Yersinia kristensenii ATCC
33638]
Length = 460
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG G+A +L T ++
Sbjct: 314 VVNFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQE 350
>gi|187927918|ref|YP_001898405.1| DEAD/DEAH box helicase [Ralstonia pickettii 12J]
gi|309781089|ref|ZP_07675827.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
gi|404393998|ref|ZP_10985802.1| hypothetical protein HMPREF0989_02676 [Ralstonia sp. 5_2_56FAA]
gi|187724808|gb|ACD25973.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
gi|308920155|gb|EFP65814.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
gi|348614316|gb|EGY63868.1| hypothetical protein HMPREF0989_02676 [Ralstonia sp. 5_2_56FAA]
Length = 627
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 68/106 (64%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA LT + LHGDM Q RN +T +R + R+LVATDVAAR
Sbjct: 299 AIVFTATKRDADSLAERLTEHGFSAGALHGDMHQGARNRTLTALRRGQLRVLVATDVAAR 358
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG G+A LV D
Sbjct: 359 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHND 404
>gi|90578403|ref|ZP_01234214.1| putative ATP-dependent RNA helicase DbpA [Photobacterium angustum
S14]
gi|90441489|gb|EAS66669.1| putative ATP-dependent RNA helicase DbpA [Photobacterium angustum
S14]
Length = 461
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 69/96 (71%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+E+++ L + + LHGD++Q ER+ + F + ILVATDVAARGLDI ++ V
Sbjct: 256 AQEISDDLEDYGFSSIALHGDLEQRERDRTLVLFANKSRSILVATDVAARGLDIDNLDAV 315
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+NY LARD + H HRIGRTGRAG+KG+A +L +DK+
Sbjct: 316 INYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKE 351
>gi|260802690|ref|XP_002596225.1| hypothetical protein BRAFLDRAFT_276047 [Branchiostoma floridae]
gi|229281479|gb|EEN52237.1| hypothetical protein BRAFLDRAFT_276047 [Branchiostoma floridae]
Length = 924
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ +V +++++F L L G QE L+ + Q A+ L L Y L LHG +
Sbjct: 461 HVIVLEEEQKFFKLL--ELLGNYQEKGSVLVFVERQEVADTLLKDLLKAAYSCLSLHGGI 518
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
DQ +R+S+I FK R+LVAT VAARGLD+ + V+NYD + + HR+GRTGRA
Sbjct: 519 DQYDRDSIINDFKSGNIRLLVATSVAARGLDVKQLILVINYDCPNHYEDYVHRVGRTGRA 578
Query: 129 GNKGVAYTLVTD 140
GNKG AYT +T+
Sbjct: 579 GNKGYAYTFITE 590
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKE 58
RAGNKG AYT +T+ +AG +++ LE + + VP ++NL + + A VK+
Sbjct: 577 RAGNKGYAYTFITEDQGRYAGDVIKALELSERPVPEEVLNLWTEYVNRQKAEGKAVKK 634
>gi|170696489|ref|ZP_02887614.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170138592|gb|EDT06795.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 537
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 76/117 (64%), Gaps = 5/117 (4%)
Query: 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
HL+R+ EG +Q A++ A +++A++LA L ++ LHGD+ Q RN I +
Sbjct: 308 HLLRD-EGLDQ----AIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTIKALR 362
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+ R+LVATDVAARG+DIP I V NYDL + + + HRIGRTGRAG G+A +LV
Sbjct: 363 ERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSLV 419
>gi|71065641|ref|YP_264368.1| ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter arcticus
273-4]
gi|71038626|gb|AAZ18934.1| possible ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter
arcticus 273-4]
Length = 567
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 69/106 (65%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
++ A + + E+LA L + LHGD+ QS+RN ++ + +C+ILVATDVAARG
Sbjct: 288 IIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKILVATDVAARG 347
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
LD+P + V+NYDL R + + HRIGR GRAG GVA +L + D+
Sbjct: 348 LDVPALSHVINYDLPRQTEDYVHRIGRCGRAGRTGVAISLCSMDDR 393
>gi|74137238|dbj|BAE22002.1| unnamed protein product [Mus musculus]
Length = 229
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 69/112 (61%)
Query: 29 GANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRIL 88
G QE ++ + Q +A+ L L Y + LHG +DQ +R+S+I FK C++L
Sbjct: 81 GHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 140
Query: 89 VATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
VAT VAARGLD+ H+ VVNY + + HR GRTGRAGNKG AYT +T+
Sbjct: 141 VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITE 192
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELA 51
RAGNKG AYT +T+ +AG +++ LE + VPP L L ++ A
Sbjct: 179 RAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKA 229
>gi|410624384|ref|ZP_11335183.1| ATP-independent RNA helicase DbpA [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410156106|dbj|GAC30557.1| ATP-independent RNA helicase DbpA [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 474
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
EL++ L + + LHGD++QSER+ V+ +F + +LVATDVAARGLDI + V+N
Sbjct: 272 ELSDELYQMGFTAVGLHGDLEQSERSQVLARFANKTVSVLVATDVAARGLDIERVDLVIN 331
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGEL 147
+ ++ DIDTHTHRIGRTGRA KG+A TL+ D + +G+L
Sbjct: 332 HRVSEDIDTHTHRIGRTGRADEKGLAITLIDDTE-EGKL 369
>gi|283767232|gb|ADB28895.1| PL10A [Macrobrachium nipponense]
Length = 485
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 70/113 (61%)
Query: 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT 91
QE L+ + + A+ L L Y V +HGD Q ER + F+ +C ILVAT
Sbjct: 260 QEESLTLVFVETKKGADALEEFLYRHGYPVTSIHGDRSQREREDALRVFRSGQCPILVAT 319
Query: 92 DVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
VAARGLDIPH++ V+N+DL DI+ + HRIGRTGR GN G+A + DK+++
Sbjct: 320 AVAARGLDIPHVKHVINFDLPSDIEEYVHRIGRTGRMGNLGLATSFFNDKNRN 372
>gi|344170690|emb|CCA83116.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal)(rhlE-like) [blood disease
bacterium R229]
Length = 614
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 68/106 (64%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA LT + LHGDM Q RN +T +R + R+LVATDVAAR
Sbjct: 296 AIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNRTLTALRRGQLRVLVATDVAAR 355
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG G+A LV D
Sbjct: 356 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 401
>gi|330860716|emb|CBX71008.1| ATP-independent RNA helicase dbpA [Yersinia enterocolitica W22703]
Length = 323
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 117 DCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLEL 176
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG G+A +L T ++
Sbjct: 177 VVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQE 213
>gi|344923702|ref|ZP_08777163.1| ATP-dependent RNA helicase [Candidatus Odyssella thessalonicensis
L13]
Length = 535
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Query: 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
+ E+LA L + + +HGD+ QS R++VI+ F+R + R+LVATDVAARGLDIPHI
Sbjct: 249 KFGTEKLAKKLNDRGHTADAIHGDLRQSRRSNVISAFRRGKNRVLVATDVAARGLDIPHI 308
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRS 149
VVN+DL + + HRIGRTGRAG +G A + V+ ++ G+ R+
Sbjct: 309 EYVVNFDLPQAPEDFIHRIGRTGRAGAEGTAISFVS-ANESGKWRA 353
>gi|261820728|ref|YP_003258834.1| ATP-dependent RNA helicase DbpA [Pectobacterium wasabiae WPP163]
gi|261604741|gb|ACX87227.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
WPP163]
Length = 490
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 70/97 (72%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + ++L ++ V LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 284 DCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELAL 343
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG +G+A +L T ++
Sbjct: 344 VVNFELAFDPEVHVHRIGRTGRAGTQGLAVSLCTPQE 380
>gi|227825056|ref|ZP_03989888.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
gi|226905555|gb|EEH91473.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
Length = 532
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 71/95 (74%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL +L + Y+ LHGD+ Q++R+ V+ KF++ + ILVATDVAARG+DI +I VV
Sbjct: 257 DELVIALATRGYEAEGLHGDLSQTQRDRVMKKFRQDQVDILVATDVAARGIDIDNITHVV 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D +++ HRIGRTGRAGN GVA T +T ++
Sbjct: 317 NFDVPQDPESYVHRIGRTGRAGNTGVALTFITPRE 351
>gi|269960877|ref|ZP_06175247.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
gi|269834317|gb|EEZ88406.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
Length = 459
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A+ L K + V+ LHGD++Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADELHHKGFSVIDLHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG+KG+A++ +KD
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKD 351
>gi|299066924|emb|CBJ38119.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal) (rhlE-like) [Ralstonia
solanacearum CMR15]
Length = 613
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 68/106 (64%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA LT + LHGDM Q RN +T +R + R+LVATDVAAR
Sbjct: 296 AIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNRTLTALRRGQLRVLVATDVAAR 355
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG G+A LV D
Sbjct: 356 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 401
>gi|297817170|ref|XP_002876468.1| hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp.
lyrata]
gi|297322306|gb|EFH52727.1| hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp.
lyrata]
Length = 639
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 61/137 (44%), Positives = 76/137 (55%), Gaps = 7/137 (5%)
Query: 11 LVTDKDKEFAGHLVRNL----EGANQ-EVPPALMNLAMQLNAEELANSLTVKEYDVLLLH 65
V D DK HL+ L E NQ + L+ + + A+ L N L + + +H
Sbjct: 370 FVHDSDKR--SHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIH 427
Query: 66 GDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRT 125
GD Q ER + FK ILVATDVAARGLDIPH+ VVN+DL DID + HRIGRT
Sbjct: 428 GDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRT 487
Query: 126 GRAGNKGVAYTLVTDKD 142
GRAGN G+A D +
Sbjct: 488 GRAGNSGLATAFFNDNN 504
>gi|89075877|ref|ZP_01162256.1| putative ATP-dependent RNA helicase DbpA [Photobacterium sp. SKA34]
gi|89048406|gb|EAR53983.1| putative ATP-dependent RNA helicase DbpA [Photobacterium sp. SKA34]
Length = 461
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 69/96 (71%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+E+++ L + + LHGD++Q ER+ + F + ILVATDVAARGLDI ++ V
Sbjct: 256 AQEISDDLEDYGFSSIALHGDLEQRERDRTLVLFANKSRSILVATDVAARGLDIDNLDAV 315
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+NY LARD + H HRIGRTGRAG+KG+A +L +DK+
Sbjct: 316 INYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKE 351
>gi|347359736|ref|YP_386648.2| DEAD/DEAH box helicase [Desulfovibrio alaskensis G20]
gi|342906268|gb|ABB36953.2| DEAD/DEAH box helicase domain protein [Desulfovibrio alaskensis
G20]
Length = 528
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 76/105 (72%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
++ + ++ +ELA +L + YD LHG+++Q++R+ V+ +F++ ILVATDVAARG
Sbjct: 248 IVFCSTKVGVDELATNLQARGYDADGLHGNLNQAQRDRVMNRFRKGNIDILVATDVAARG 307
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+D+ ++ VVNYD+ D++++ HRIGRTGRAG G A+T V+ ++
Sbjct: 308 IDVENVEAVVNYDIPNDVESYVHRIGRTGRAGRAGRAFTFVSGRE 352
>gi|326490075|dbj|BAJ94111.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 346
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 60/97 (61%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+ L N L + +HGD +Q ER + FK + ILVATDVAARGLDIPH+ V
Sbjct: 161 ADSLENWLCTNGFPATSIHGDRNQQEREHALRSFKSGQTPILVATDVAARGLDIPHVAHV 220
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
VN+DL DID + HRIGRTGRAG G+A D +
Sbjct: 221 VNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNDNNS 257
>gi|336115431|ref|YP_004570198.1| DEAD/DEAH box helicase [Bacillus coagulans 2-6]
gi|335368861|gb|AEH54812.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 2-6]
Length = 475
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 71/95 (74%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELAN+LT++ Y +HGD+ Q++R SV+ KFK + +LVATDVAARGLDI + V
Sbjct: 254 DELANALTLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD+ +D +++ HRIGRTGRAG +G+A T VT ++
Sbjct: 314 NYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPRE 348
>gi|333908504|ref|YP_004482090.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas
posidonica IVIA-Po-181]
gi|333478510|gb|AEF55171.1| DEAD/DEAH box helicase domain protein [Marinomonas posidonica
IVIA-Po-181]
Length = 460
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 58/79 (73%)
Query: 64 LHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIG 123
+HGD++Q +R+ V+ +F Q ILVATDVAARG+D+ + +VNYD RD D HTHRIG
Sbjct: 274 IHGDLEQKQRDQVLVRFSNQSSCILVATDVAARGIDVKEVDLIVNYDTTRDTDVHTHRIG 333
Query: 124 RTGRAGNKGVAYTLVTDKD 142
RTGRAG GVA L+T KD
Sbjct: 334 RTGRAGAAGVAVNLITSKD 352
>gi|254468401|ref|ZP_05081807.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
gi|207087211|gb|EDZ64494.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
Length = 444
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 71/107 (66%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + A+ L++ L + + LHGDM Q ER I +FK E +ILVATDVAAR
Sbjct: 250 AIIFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFKNNEIQILVATDVAAR 309
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
G+D+ I V+N+DL R ++ + HRIGRTGRA KG A +LV DK+K
Sbjct: 310 GIDVDDITHVINFDLPRQVEDYIHRIGRTGRAERKGKAISLVIDKEK 356
>gi|154150192|ref|YP_001403810.1| DEAD/DEAH box helicase [Methanoregula boonei 6A8]
gi|153998744|gb|ABS55167.1| DEAD/DEAH box helicase domain protein [Methanoregula boonei 6A8]
Length = 532
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 8 AYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGD 67
+Y V D+DK L R ++ + ++ A++ + AE+LA + + Y LHGD
Sbjct: 222 SYIEVRDRDK--LDSLCRVIDVVDPQL--AIIFCNTKRGAEDLAGRIRARGYRAEELHGD 277
Query: 68 MDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGR 127
M QS+R+ V+ F++ IL+ATDVAARG+D+ + V+NYD+ +D+D + HRIGRTGR
Sbjct: 278 MKQSQRDRVMGGFRKGTIDILIATDVAARGIDVEDVDMVINYDVPQDVDYYIHRIGRTGR 337
Query: 128 AGNKGVAYTLVTDKD 142
AG G A T VT +D
Sbjct: 338 AGKSGRAITFVTSRD 352
>gi|152995705|ref|YP_001340540.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150836629|gb|ABR70605.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 438
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 58/79 (73%)
Query: 64 LHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIG 123
+HGD++Q +R+ V+ +F Q +LVATDVAARG+D+ I VVNYD RD D HTHRIG
Sbjct: 252 IHGDLEQRQRDQVLVRFSNQSSCVLVATDVAARGIDVKEIDLVVNYDTTRDTDVHTHRIG 311
Query: 124 RTGRAGNKGVAYTLVTDKD 142
RTGRAG G+A LVT KD
Sbjct: 312 RTGRAGAAGIAVNLVTSKD 330
>gi|424048065|ref|ZP_17785621.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-03]
gi|408883375|gb|EKM22162.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-03]
Length = 459
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A+ L K + V+ LHGD++Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADELHHKGFSVIDLHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG+KG+A++ +KD
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKD 351
>gi|283767234|gb|ADB28896.1| PL10B [Macrobrachium nipponense]
Length = 709
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 70/113 (61%)
Query: 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT 91
QE L+ + + A+ L L Y V +HGD Q ER + F+ +C ILVAT
Sbjct: 484 QEESLTLVFVETKKGADALEEFLYRHGYPVTSIHGDRSQREREDALRVFRSGQCPILVAT 543
Query: 92 DVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
VAARGLDIPH++ V+N+DL DI+ + HRIGRTGR GN G+A + DK+++
Sbjct: 544 AVAARGLDIPHVKHVINFDLPSDIEEYVHRIGRTGRMGNLGLATSFFNDKNRN 596
>gi|3986287|dbj|BAA34994.1| DjVLGB [Dugesia japonica]
Length = 781
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 50/98 (51%), Positives = 66/98 (67%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+ LA L K Y V +HGD Q ER + ++ F+ +C ILVAT VAARGLDIP+++ V
Sbjct: 449 ADSLARFLLSKGYPVSSIHGDRSQVEREAALSMFRNGQCPILVATAVAARGLDIPNVKHV 508
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYDL DI+ + HRIGRTGR GN G A + DK+ +
Sbjct: 509 INYDLPSDIEEYVHRIGRTGRLGNHGRATSFYVDKNNN 546
>gi|224141279|ref|XP_002324002.1| predicted protein [Populus trichocarpa]
gi|222867004|gb|EEF04135.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++LA +LT +++ +HGD QSER+ V+++F+ ILVATDVAARGLDI IR VV
Sbjct: 413 DQLARNLT-RQFGAAAIHGDKSQSERDHVLSQFRTGRSPILVATDVAARGLDIKDIRVVV 471
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD ++ + HRIGRTGRAG GVAYT D+D
Sbjct: 472 NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQD 506
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG GVAYT D+D ++A L++ LEGANQ VPP + +A
Sbjct: 491 RAGATGVAYTFFGDQDAKYASDLIKVLEGANQLVPPEIRAMA 532
>gi|156389356|ref|XP_001634957.1| predicted protein [Nematostella vectensis]
gi|156222046|gb|EDO42894.1| predicted protein [Nematostella vectensis]
Length = 794
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 68/108 (62%)
Query: 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT 91
QE L+ + Q +A+ L L + Y L LHG MDQ +R+S I FK ++++AT
Sbjct: 382 QEQGSVLVFVEKQDSADSLFKDLLKRSYPCLSLHGGMDQFDRDSTIADFKNGVTKLMIAT 441
Query: 92 DVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
VAARGLD+ H+ VVNYD + + HR+GRTGRAGNKG AYT +T
Sbjct: 442 SVAARGLDVKHLNLVVNYDCPNHYEDYVHRVGRTGRAGNKGTAYTFLT 489
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAGNKG AYT +T + FA +++ LE A VP + NLA
Sbjct: 477 RAGNKGTAYTFLTPEQGRFAIDVIKALEMAENPVPEDVRNLA 518
>gi|323497181|ref|ZP_08102201.1| ATP-dependent RNA helicase DbpA [Vibrio sinaloensis DSM 21326]
gi|323317756|gb|EGA70747.1| ATP-dependent RNA helicase DbpA [Vibrio sinaloensis DSM 21326]
Length = 458
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 63/84 (75%)
Query: 59 YDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTH 118
+ V+ LHGDM+Q ER +T F + ILVATDVAARGLD+ ++ V N++L+RD + H
Sbjct: 267 FSVVELHGDMEQREREQALTMFANKSVSILVATDVAARGLDVDNLDAVFNFELSRDPEVH 326
Query: 119 THRIGRTGRAGNKGVAYTLVTDKD 142
HRIGRTGRAG+KG+A++ ++K+
Sbjct: 327 VHRIGRTGRAGSKGIAFSFYSEKE 350
>gi|335043275|ref|ZP_08536302.1| superfamily II DNA and RNA helicase [Methylophaga
aminisulfidivorans MP]
gi|333789889|gb|EGL55771.1| superfamily II DNA and RNA helicase [Methylophaga
aminisulfidivorans MP]
Length = 460
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 66/97 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+E+A L+ ++ +HGD++Q +R+ + +F C +LVATDVAARGLDI +
Sbjct: 254 QCDEVAQWLSSQQIQAAAIHGDLEQRDRDQALIRFANNSCPVLVATDVAARGLDIAALEM 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+NY+L RD + + HRIGRTGRAG KG+A ++VT D
Sbjct: 314 VINYELPRDPEVYVHRIGRTGRAGEKGMAISIVTPAD 350
>gi|260945443|ref|XP_002617019.1| hypothetical protein CLUG_02463 [Clavispora lusitaniae ATCC 42720]
gi|238848873|gb|EEQ38337.1| hypothetical protein CLUG_02463 [Clavispora lusitaniae ATCC 42720]
Length = 341
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 81/138 (58%), Gaps = 10/138 (7%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLN----AEELANSLTVKEYDVLLL 64
Y V KE H + +LE A +N+ + +N AE L +L ++ V L
Sbjct: 135 YVFVPSYVKEAYLHTILSLEKY------ATVNVIIFVNRTRTAELLRRTLRKLDFRVASL 188
Query: 65 HGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGR 124
H +M QSER S + +FK Q RIL+ATDVA+RGLDIP + V+NYDL D D HR+GR
Sbjct: 189 HSEMPQSERTSSLHRFKAQAARILIATDVASRGLDIPTVELVINYDLPADPDDFIHRVGR 248
Query: 125 TGRAGNKGVAYTLVTDKD 142
T RAG KG + ++V ++D
Sbjct: 249 TARAGRKGDSVSIVAERD 266
>gi|17545671|ref|NP_519073.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
gi|17427964|emb|CAD14654.1| putative atp-dependent rna helicase protein [Ralstonia solanacearum
GMI1000]
Length = 608
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 68/106 (64%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA LT + LHGDM Q RN +T +R + R+LVATDVAAR
Sbjct: 296 AIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNRTLTALRRGQLRVLVATDVAAR 355
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG G+A LV D
Sbjct: 356 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 401
>gi|118359808|ref|XP_001013142.1| CLN3 protein [Tetrahymena thermophila]
gi|89294909|gb|EAR92897.1| CLN3 protein [Tetrahymena thermophila SB210]
Length = 1138
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 52/95 (54%), Positives = 69/95 (72%), Gaps = 3/95 (3%)
Query: 46 NAEELANSLTVKEY-DVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIR 104
N +L+ + + Y + L+LHGD QSER +I KFK + +L+ATDVA+RGLDIP I+
Sbjct: 319 NCNKLSELIKQRLYLEALVLHGDKIQSERTDIINKFKAAK-NLLIATDVASRGLDIPEIK 377
Query: 105 TVVNYDLARDIDTHTHRIGRTGRAG-NKGVAYTLV 138
TV+NYDL +D DT+ HRIGRTGRAG G AY+L+
Sbjct: 378 TVINYDLPQDTDTYIHRIGRTGRAGATDGTAYSLI 412
Score = 39.3 bits (90), Expect = 0.50, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 1 RAG-NKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAM---QLNAEELANSLTV 56
RAG G AY+L+ + +FA +++ +E + Q VPP L +AM Q A+ LA L V
Sbjct: 400 RAGATDGTAYSLILMSESKFASDMLKVMEISGQPVPPNLEEVAMNDDQFKAQRLATKLGV 459
>gi|392970003|ref|ZP_10335412.1| probable DEAD-box ATP-dependent RNA helicase [Staphylococcus
equorum subsp. equorum Mu2]
gi|403046049|ref|ZP_10901524.1| ATP-dependent RNA helicase [Staphylococcus sp. OJ82]
gi|392511931|emb|CCI58617.1| probable DEAD-box ATP-dependent RNA helicase [Staphylococcus
equorum subsp. equorum Mu2]
gi|402764211|gb|EJX18298.1| ATP-dependent RNA helicase [Staphylococcus sp. OJ82]
Length = 507
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 68/97 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI ++ V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVAARGLDISNVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG KGVA T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMD 350
>gi|420458128|ref|ZP_14956938.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-26]
gi|393075649|gb|EJB76403.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-26]
Length = 492
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|261251266|ref|ZP_05943840.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|417956599|ref|ZP_12599563.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|260938139|gb|EEX94127.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342809439|gb|EGU44558.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 458
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 64/85 (75%)
Query: 59 YDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTH 118
+ V+ LHGDM+Q ER +T F + ILVATDVAARGLD+ ++ V N++L+RD + H
Sbjct: 267 FSVVELHGDMEQREREQALTMFANKSISILVATDVAARGLDVDNLDAVFNFELSRDPEVH 326
Query: 119 THRIGRTGRAGNKGVAYTLVTDKDK 143
HRIGRTGRAG+KGVA++ ++K++
Sbjct: 327 VHRIGRTGRAGSKGVAFSFYSEKEE 351
>gi|358056965|dbj|GAA97124.1| hypothetical protein E5Q_03800 [Mixia osmundae IAM 14324]
Length = 559
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 75/124 (60%)
Query: 16 DKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNS 75
D E G L+++LE + E L+ + + A++L L + L +HGD Q ER+
Sbjct: 344 DYEKRGKLIKHLEKISAENAKVLIFIGTKRVADDLTKYLRQDGWPALAIHGDKQQQERDW 403
Query: 76 VITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAY 135
V+ +FK I++ATDVA+RGLD+ I V+NYD+ I+ + HRIGRTGRAG KG AY
Sbjct: 404 VLAEFKSGRSPIMIATDVASRGLDVKDISYVINYDMPNQIEDYIHRIGRTGRAGRKGTAY 463
Query: 136 TLVT 139
+ T
Sbjct: 464 SYFT 467
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAM 43
RAG KG AY+ T + + A L + L A Q VPP L ++M
Sbjct: 455 RAGRKGTAYSYFTPEQSKLARDLAKILADAKQNVPPELAQMSM 497
>gi|322797566|gb|EFZ19610.1| hypothetical protein SINV_13775 [Solenopsis invicta]
Length = 692
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 81/135 (60%), Gaps = 2/135 (1%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ +V ++D++F + + + G Q+ ++ + Q NA+ L L Y + LHG +
Sbjct: 254 HVVVLEEDQKF--YKLLEILGHYQDKGSTIIFVDKQENADTLLKDLMKASYSCMSLHGGI 311
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
DQ +R+S I FK ++LVAT VAARGLD+ H+ VVNYD + + HR GRTGRA
Sbjct: 312 DQCDRDSTILDFKAGRTKLLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRCGRTGRA 371
Query: 129 GNKGVAYTLVTDKDK 143
GNKG AYT +T + +
Sbjct: 372 GNKGYAYTFITSEQE 386
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV 56
RAGNKG AYT +T + + +AG ++R E A VP L L A + A+ V
Sbjct: 370 RAGNKGYAYTFITSEQERYAGDILRAHELAGVPVPEPLRQLWEGYKARQAADGKKV 425
>gi|56965701|ref|YP_177435.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
gi|56911947|dbj|BAD66474.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
Length = 493
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 69/97 (71%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L + Y LHGD++Q++RNSV+ KFK +LVATDVAARGLDI + V
Sbjct: 255 DELAEALIKRGYRAEGLHGDLNQAKRNSVLRKFKEGLIDVLVATDVAARGLDISGVTHVF 314
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+DL +D +++ HRIGRTGRAG G+A TL T +++
Sbjct: 315 NFDLPQDPESYVHRIGRTGRAGRSGIAITLATKPERE 351
>gi|420466568|ref|ZP_14965325.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Hp H-9]
gi|393084966|gb|EJB85654.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Hp H-9]
Length = 492
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|432902667|ref|XP_004077037.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Oryzias
latipes]
Length = 650
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 85/134 (63%), Gaps = 5/134 (3%)
Query: 10 TLVTDKDKE-FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
T+V +++K+ F +RN+ ++ A++ + ++ A++L++ L ++ V LHGD
Sbjct: 450 TIVQEEEKKAFVMDFIRNMLPQDK----AIIFVGKKIKADDLSSDLCLQGLAVQSLHGDR 505
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
+Q +R + FK RILVATD+A+RGLD+ I V NYD R+I+ + HR+GRTGRA
Sbjct: 506 EQRDREEALKDFKESRVRILVATDLASRGLDVHDITHVFNYDFPRNIEEYVHRVGRTGRA 565
Query: 129 GNKGVAYTLVTDKD 142
G G A TLVT +D
Sbjct: 566 GRSGAAVTLVTRED 579
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG G A TLVT +D A L+ LE + QEVP L+ +A
Sbjct: 564 RAGRSGAAVTLVTREDWRMAPELIPILERSGQEVPHELVLMA 605
>gi|34498347|ref|NP_902562.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34104201|gb|AAQ60560.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 439
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 66/101 (65%)
Query: 42 AMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIP 101
A + +EELA+ L+ + Y LHGDM QS RN + +R ++LVATDVAARG+D+P
Sbjct: 253 ATKAYSEELADKLSDQGYSAACLHGDMPQSWRNRTLNDLRRGRIKVLVATDVAARGIDVP 312
Query: 102 HIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
I VVN+DL + + + HRIGRTGRAG G A TL K+
Sbjct: 313 TITHVVNFDLPKQAEDYVHRIGRTGRAGRDGTAITLAESKE 353
>gi|420493609|ref|ZP_14992180.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-16]
gi|393112865|gb|EJC13385.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-16]
Length = 492
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420497178|ref|ZP_14995739.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25]
gi|393114875|gb|EJC15390.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25]
Length = 501
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|238791786|ref|ZP_04635423.1| ATP-independent RNA helicase dbpA [Yersinia intermedia ATCC 29909]
gi|238728890|gb|EEQ20407.1| ATP-independent RNA helicase dbpA [Yersinia intermedia ATCC 29909]
Length = 460
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLAL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG G+A +L T ++
Sbjct: 314 VVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQE 350
>gi|420527527|ref|ZP_15025921.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25c]
gi|420529549|ref|ZP_15027936.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25d]
gi|393134653|gb|EJC35062.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25c]
gi|393137318|gb|EJC37704.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-25d]
Length = 491
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420431829|ref|ZP_14930848.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-16]
gi|393049422|gb|EJB50388.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-16]
Length = 491
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|307109616|gb|EFN57854.1| hypothetical protein CHLNCDRAFT_6836, partial [Chlorella
variabilis]
Length = 461
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Query: 61 VLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTH 120
V +HGDMDQ R + FK LVATDVAARGLDI I+TVVNYD A+DIDTH H
Sbjct: 335 VAAIHGDMDQHTRMHTLADFKAGAYHALVATDVAARGLDIKSIKTVVNYDAAKDIDTHVH 394
Query: 121 RIGRTGRAGNK-GVAYTLV 138
RIGRTGRAG+K GVAYTL+
Sbjct: 395 RIGRTGRAGDKDGVAYTLL 413
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG+K GVAYTL+ + AG LV+NL A QEVP L LA
Sbjct: 401 RAGDKDGVAYTLLLPHETRIAGDLVQNLATAGQEVPAMLHELA 443
>gi|156973083|ref|YP_001443990.1| ATP-dependent RNA helicase DbpA [Vibrio harveyi ATCC BAA-1116]
gi|156524677|gb|ABU69763.1| hypothetical protein VIBHAR_00762 [Vibrio harveyi ATCC BAA-1116]
Length = 459
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A+ L K + V+ LHGD++Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADELHHKGFSVVDLHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG+KG+A++ +KD
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKD 351
>gi|385209074|ref|ZP_10035942.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385181412|gb|EIF30688.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 539
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 76/117 (64%), Gaps = 5/117 (4%)
Query: 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
HL+R+ EG +Q A++ A +++A++LA L ++ LHGD+ Q RN I +
Sbjct: 308 HLLRD-EGLDQ----AIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTIRALR 362
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+ R+LVATDVAARG+DIP I V NYDL + + + HRIGRTGRAG G+A +LV
Sbjct: 363 ERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSLV 419
>gi|296272832|ref|YP_003655463.1| DEAD/DEAH box helicase [Arcobacter nitrofigilis DSM 7299]
gi|296097006|gb|ADG92956.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
7299]
Length = 452
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 66/101 (65%)
Query: 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
++ +EL L YD L+LH D +Q R+ +IT F + IL+ATDVA+RGLDI +
Sbjct: 248 KIKCDELDTYLYDMGYDPLVLHSDFEQKTRDEIITLFSNKSYPILIATDVASRGLDIDDV 307
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
V+NYD+A D + +THRIGRT RAG GVA TL D D+D
Sbjct: 308 EMVINYDMANDTNVYTHRIGRTARAGKSGVALTLYNDYDED 348
>gi|333923641|ref|YP_004497221.1| DEAD/DEAH box helicase [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333749202|gb|AEF94309.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 532
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL L + Y + LHGD+ Q +RN+V+ +F+ E +LVATDVAARGLDI + V+
Sbjct: 260 DELVAGLQARGYTAVSLHGDLSQQQRNTVMRQFRSGEVELLVATDVAARGLDIEGVSHVI 319
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD+ +D + + HRIGRTGRAG GVA T++T ++
Sbjct: 320 NYDIPQDPEFYVHRIGRTGRAGRSGVAITIITPRE 354
>gi|326430586|gb|EGD76156.1| DEAD box polypeptide 17 isoform 2 [Salpingoeca sp. ATCC 50818]
Length = 629
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 63/97 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A L L K Y+ +HGD+ Q +RN V+ +FK E +++ATDVAARGLD+P + V
Sbjct: 471 AARLEQFLQYKGYNTKAIHGDLSQGDRNRVLQEFKSGEVPLMIATDVAARGLDVPDVEYV 530
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+NY I+ + HRIGRTGRAG KG A+TL T DK
Sbjct: 531 INYTFPLTIEEYVHRIGRTGRAGAKGTAHTLFTQHDK 567
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 22/41 (53%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNL 41
RAG KG A+TL T DK AG L L A VP ALM
Sbjct: 551 RAGAKGTAHTLFTQHDKHHAGGLGNVLRAAGVTVPEALMKF 591
>gi|145974737|gb|ABQ00072.1| PL10A [Fenneropenaeus chinensis]
Length = 660
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 71/117 (60%), Gaps = 6/117 (5%)
Query: 34 VPP------ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRI 87
VPP L+ + + A+ L L Y V +HGD Q ER + F+ +C I
Sbjct: 491 VPPRREESLTLVFVETKKGADALEEFLYRHGYPVTSIHGDRSQREREDALRVFRSGQCPI 550
Query: 88 LVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LVAT VAARGLDIPH++ V+N+DL DI+ + HRIGRTGR GN G+A + DK+++
Sbjct: 551 LVATAVAARGLDIPHVKHVINFDLPSDIEEYVHRIGRTGRMGNLGLATSFFNDKNRN 607
>gi|444424512|ref|ZP_21219968.1| ATP-dependent RNA helicase DbpA [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444242218|gb|ELU53733.1| ATP-dependent RNA helicase DbpA [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 459
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A+ L K + V+ LHGD++Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADELHHKGFSVVDLHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG+KG+A++ +KD
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKD 351
>gi|383854537|ref|XP_003702777.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
[Megachile rotundata]
Length = 1035
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 80/133 (60%), Gaps = 2/133 (1%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ +V ++D++F + + + G Q+ ++ + Q NA+ L L Y + LHG +
Sbjct: 597 HVVVLEEDQKF--YKLLEILGHYQDKGSTIIFVDKQENADTLLKDLMKASYSCMSLHGGI 654
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
DQ +R+S I FK ++LVAT VAARGLD+ H+ VVNYD + + HR GRTGRA
Sbjct: 655 DQCDRDSTILDFKAGRTKLLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRCGRTGRA 714
Query: 129 GNKGVAYTLVTDK 141
GNKG AYT +T +
Sbjct: 715 GNKGYAYTFITSE 727
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV 56
RAGNKG AYT +T + + +AG ++R E A VP L L A + A+ V
Sbjct: 713 RAGNKGYAYTFITSEQERYAGDILRAHELAGVPVPEPLRQLWEGYKARQAADGKKV 768
>gi|350530090|ref|ZP_08909031.1| ATP-dependent RNA helicase DbpA [Vibrio rotiferianus DAT722]
Length = 459
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A+ L K + V+ LHGD++Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADELHHKGFSVVDLHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG+KG+A++ +KD
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKD 351
>gi|20072320|gb|AAH26492.1| Ddx46 protein [Mus musculus]
Length = 626
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 69/112 (61%)
Query: 29 GANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRIL 88
G QE ++ + Q +A+ L L Y + LHG +DQ +R+S+I FK C++L
Sbjct: 208 GHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 267
Query: 89 VATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
VAT VAARGLD+ H+ VVNY + + HR GRTGRAGNKG AYT +T+
Sbjct: 268 VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITE 319
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKE 58
RAGNKG AYT +T+ +AG +++ LE + VPP L L ++ A +K+
Sbjct: 306 RAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKK 363
>gi|207109448|ref|ZP_03243610.1| ATP-dependent RNA helicase [Helicobacter pylori HPKX_438_CA4C1]
Length = 177
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 69/109 (63%)
Query: 42 AMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIP 101
A Q A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI
Sbjct: 11 AHQKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDIG 70
Query: 102 HIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
+ V NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 71 GVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 119
>gi|153938870|ref|YP_001392080.1| DEAD/DEAH box helicase [Clostridium botulinum F str. Langeland]
gi|384463072|ref|YP_005675667.1| ATP-dependent RNA helicase [Clostridium botulinum F str. 230613]
gi|152934766|gb|ABS40264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. Langeland]
gi|295320089|gb|ADG00467.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. 230613]
Length = 524
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 87/134 (64%), Gaps = 4/134 (2%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
Y V +KDK A + R ++ ++E A++ + +EL ++ K Y+V +HGDM
Sbjct: 224 YFAVKNKDKLEA--ICRIID--SEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDM 279
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
Q++R + + KFK+ LVATDVAARG+D+ +I V+NYD+ +D +++ HRIGRTGRA
Sbjct: 280 SQNQRINTLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRA 339
Query: 129 GNKGVAYTLVTDKD 142
+G AY+LVT ++
Sbjct: 340 DKEGTAYSLVTPRE 353
>gi|51892785|ref|YP_075476.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
gi|51856474|dbj|BAD40632.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
Length = 526
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL +L + Y +HGDM+Q++RN V+++FK +LVATDVAARGLDI + V
Sbjct: 258 DELVEALQARGYQAEGIHGDMNQAQRNRVMSRFKEGYIELLVATDVAARGLDISDVTHVF 317
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD+ +D +++ HRIGRTGRAG G A TLVT ++
Sbjct: 318 NYDIPQDPESYVHRIGRTGRAGRTGTAITLVTPRE 352
>gi|330813838|ref|YP_004358077.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
IMCC9063]
gi|327486933|gb|AEA81338.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
IMCC9063]
Length = 558
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 50/98 (51%), Positives = 70/98 (71%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
NA++LA +L + ++ LHG++ Q++RN VI KF+ + +LVATD+AARGLDIPHI
Sbjct: 251 NAKKLAKNLEKEGFESDSLHGNLRQNKRNQVIAKFRANKIHVLVATDIAARGLDIPHIEH 310
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
VVN+DL + + HR+GRTGRAG G A++ VT DK
Sbjct: 311 VVNFDLPQQAEDFIHRMGRTGRAGASGTAWSFVTPSDK 348
>gi|153834391|ref|ZP_01987058.1| ATP-independent RNA helicase DbpA [Vibrio harveyi HY01]
gi|388600314|ref|ZP_10158710.1| ATP-dependent RNA helicase DbpA [Vibrio campbellii DS40M4]
gi|424034228|ref|ZP_17773635.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-01]
gi|424042917|ref|ZP_17780578.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-02]
gi|148869239|gb|EDL68261.1| ATP-independent RNA helicase DbpA [Vibrio harveyi HY01]
gi|408873379|gb|EKM12577.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-01]
gi|408884198|gb|EKM22949.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-02]
Length = 459
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A+ L K + V+ LHGD++Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADELHHKGFSVVDLHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG+KG+A++ +KD
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKD 351
>gi|349602917|gb|AEP98907.1| putative ATP-dependent RNA helicase DDX46-like protein, partial
[Equus caballus]
Length = 667
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 69/112 (61%)
Query: 29 GANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRIL 88
G QE ++ + Q +A+ L L Y + LHG +DQ +R+S+I FK C++L
Sbjct: 249 GHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 308
Query: 89 VATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
VAT VAARGLD+ H+ VVNY + + HR GRTGRAGNKG AYT +T+
Sbjct: 309 VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITE 360
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKE 58
RAGNKG AYT +T+ +AG +++ LE + VPP L L ++ A +K+
Sbjct: 347 RAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKK 404
>gi|323701905|ref|ZP_08113575.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
DSM 574]
gi|323533209|gb|EGB23078.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
DSM 574]
Length = 532
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL L + Y + LHGD+ Q +RN+V+ +F+ E +LVATDVAARGLDI + V+
Sbjct: 260 DELVAGLQARGYTAVSLHGDLSQQQRNTVMRQFRSGEVELLVATDVAARGLDIEGVSHVI 319
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD+ +D + + HRIGRTGRAG GVA T++T ++
Sbjct: 320 NYDIPQDPEFYVHRIGRTGRAGRSGVAITIITPRE 354
>gi|15231074|ref|NP_191416.1| DEAD-box ATP-dependent RNA helicase 52 [Arabidopsis thaliana]
gi|75335836|sp|Q9M2F9.1|RH52_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 52
gi|6735374|emb|CAB68195.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
gi|15146288|gb|AAK83627.1| AT3g58570/F14P22_160 [Arabidopsis thaliana]
gi|21593710|gb|AAM65677.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
gi|27363456|gb|AAO11647.1| At3g58570/F14P22_160 [Arabidopsis thaliana]
gi|332646279|gb|AEE79800.1| DEAD-box ATP-dependent RNA helicase 52 [Arabidopsis thaliana]
Length = 646
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 61/137 (44%), Positives = 76/137 (55%), Gaps = 7/137 (5%)
Query: 11 LVTDKDKEFAGHLVRNL----EGANQ-EVPPALMNLAMQLNAEELANSLTVKEYDVLLLH 65
V D DK HL+ L E NQ + L+ + + A+ L N L + + +H
Sbjct: 379 FVHDSDKR--SHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIH 436
Query: 66 GDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRT 125
GD Q ER + FK ILVATDVAARGLDIPH+ VVN+DL DID + HRIGRT
Sbjct: 437 GDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRT 496
Query: 126 GRAGNKGVAYTLVTDKD 142
GRAGN G+A D +
Sbjct: 497 GRAGNSGLATAFFNDNN 513
>gi|402082038|gb|EJT77183.1| hypothetical protein GGTG_07095 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 685
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 68/112 (60%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NA+EL+ L + +HGD Q ER + F+ C ILVAT VAARG
Sbjct: 459 LVFVETKRNADELSYFLQNRNLPATAIHGDRTQRERERALELFRTGRCPILVATAVAARG 518
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRS 149
LDIP++ V+NYDL DID + HRIGRTGRAGN GVA +D G +S
Sbjct: 519 LDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGVATAFFNPRDNIGVAQS 570
>gi|366166269|ref|ZP_09466024.1| DEAD/DEAH box helicase [Acetivibrio cellulolyticus CD2]
Length = 544
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 66/97 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+EL +SL + Y LHGDM Q +RN V+TKF++ + IL+ATDVAARG+D+ ++
Sbjct: 255 QVDELTSSLQSRGYSTEALHGDMKQDQRNRVMTKFRKGQIDILIATDVAARGIDVDNVEA 314
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V NYDL D + + HRIGRTGRAG G ++T V ++
Sbjct: 315 VFNYDLPSDEEYYVHRIGRTGRAGKTGKSFTFVVGRE 351
>gi|118589105|ref|ZP_01546512.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
C-terminal:ATP/GTP-binding site motif A (P-loop)
[Stappia aggregata IAM 12614]
gi|118438434|gb|EAV45068.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
C-terminal:ATP/GTP-binding site motif A (P-loop)
[Stappia aggregata IAM 12614]
Length = 505
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 65/91 (71%)
Query: 53 SLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLA 112
SL EY+V LHGDMDQ R ++ F++ ++LVA+DVAARGLDIP + V N+D+
Sbjct: 288 SLERHEYNVGALHGDMDQRTRMMMLDNFRKGTIKLLVASDVAARGLDIPEVSHVFNFDVP 347
Query: 113 RDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+ + + HRIGRTGRAG KG A+TLVT +D+
Sbjct: 348 SNAEDYVHRIGRTGRAGRKGTAFTLVTGEDQ 378
>gi|238749573|ref|ZP_04611078.1| ATP-independent RNA helicase dbpA [Yersinia rohdei ATCC 43380]
gi|238712228|gb|EEQ04441.1| ATP-independent RNA helicase dbpA [Yersinia rohdei ATCC 43380]
Length = 504
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 298 DCQNVYEALESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAARGLDIKDLAL 357
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG G+A +L T ++
Sbjct: 358 VVNFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQE 394
>gi|332031410|gb|EGI70923.1| Putative ATP-dependent RNA helicase DDX46 [Acromyrmex echinatior]
Length = 1013
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 80/133 (60%), Gaps = 2/133 (1%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ +V ++D++F + + + G Q+ ++ + Q NA+ L L Y + LHG +
Sbjct: 575 HVVVLEEDQKF--YKLLEILGHYQDKGSTIIFVDKQENADTLLKDLMKASYSCMSLHGGI 632
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
DQ +R+S I FK ++LVAT VAARGLD+ H+ VVNYD + + HR GRTGRA
Sbjct: 633 DQCDRDSTILDFKAGRTKLLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRCGRTGRA 692
Query: 129 GNKGVAYTLVTDK 141
GNKG AYT +T +
Sbjct: 693 GNKGYAYTFITSE 705
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV 56
RAGNKG AYT +T + + +AG ++R E A VP L L A + A+ V
Sbjct: 691 RAGNKGYAYTFITSEQERYAGDILRAHELAGVPVPEPLRQLWEGYKARQAADGKKV 746
>gi|306840076|ref|ZP_07472862.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
gi|306404804|gb|EFM61097.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
Length = 482
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 66/97 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ EL SLT E+D LHGDMDQ R ++++ FK + R+LVA+DVAARGLDIP +
Sbjct: 259 DVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLVASDVAARGLDIPDVSH 318
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V N+D+ + + HRIGRTGRAG G A+T+VT D
Sbjct: 319 VFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTLSD 355
>gi|424835106|ref|ZP_18259776.1| DEAD-box ATP dependent DNA helicase [Clostridium sporogenes PA
3679]
gi|365978233|gb|EHN14325.1| DEAD-box ATP dependent DNA helicase [Clostridium sporogenes PA
3679]
Length = 525
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 87/134 (64%), Gaps = 4/134 (2%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
Y V +KDK A + R ++ ++E A++ + +EL ++ K Y+V +HGDM
Sbjct: 225 YFAVKNKDKLEA--ICRIID--SEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDM 280
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
Q++R + + KFK+ LVATDVAARG+D+ +I V+NYD+ +D +++ HRIGRTGRA
Sbjct: 281 SQNQRINTLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRA 340
Query: 129 GNKGVAYTLVTDKD 142
+G AY+LVT ++
Sbjct: 341 DKEGTAYSLVTPRE 354
>gi|148245005|ref|YP_001219699.1| ATP-dependent RNA helicase DbpA [Candidatus Vesicomyosocius
okutanii HA]
gi|146326832|dbj|BAF61975.1| ATP-dependent RNA helicase DbpA [Candidatus Vesicomyosocius
okutanii HA]
Length = 462
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 86/142 (60%), Gaps = 4/142 (2%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYD 60
R+ K Y + TD ++ A L+ A + +L+ + +A+++AN L +
Sbjct: 214 RSTIKQYFYKINTDNERMMALRLLL----AKYKPESSLVFCNTKRDAQKVANELVYYGFY 269
Query: 61 VLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTH 120
L +HGD+DQ ER+ + +F + ILVATDVAARGLDI + V+N+D+A D H H
Sbjct: 270 ALAIHGDLDQRERDQALIRFSNKSVSILVATDVAARGLDIDSLDMVINFDIAHDDQVHIH 329
Query: 121 RIGRTGRAGNKGVAYTLVTDKD 142
RIGRTGRAG+ G+A TL ++++
Sbjct: 330 RIGRTGRAGHFGIACTLYSNRE 351
>gi|187924463|ref|YP_001896105.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187715657|gb|ACD16881.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 542
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 76/117 (64%), Gaps = 5/117 (4%)
Query: 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
HL+R+ EG +Q A++ A +++A++LA L ++ LHGD+ Q RN I +
Sbjct: 305 HLLRD-EGLDQ----AIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTIRALR 359
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+ R+LVATDVAARG+DIP I V NYDL + + + HRIGRTGRAG G+A +LV
Sbjct: 360 ERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSLV 416
>gi|170760570|ref|YP_001788120.1| DEAD/DEAH box helicase [Clostridium botulinum A3 str. Loch Maree]
gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A3 str. Loch Maree]
Length = 524
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 87/134 (64%), Gaps = 4/134 (2%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
Y V +KDK A + R ++ ++E A++ + +EL ++ K Y+V +HGDM
Sbjct: 224 YFAVKNKDKLEA--ICRIID--SEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDM 279
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
Q++R + + KFK+ LVATDVAARG+D+ +I V+NYD+ +D +++ HRIGRTGRA
Sbjct: 280 SQNQRINTLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRA 339
Query: 129 GNKGVAYTLVTDKD 142
+G AY+LVT ++
Sbjct: 340 DKEGTAYSLVTPRE 353
>gi|320355280|ref|YP_004196619.1| DEAD/DEAH box helicase [Desulfobulbus propionicus DSM 2032]
gi|320123782|gb|ADW19328.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
DSM 2032]
Length = 552
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
Y LV +DK A L R E + + AL+ ++ ELAN LT + + L+GD+
Sbjct: 221 YYLVNQQDKVAA--LTRLFE--METIDSALIFTRTRIGTGELANQLTSRGFPAEALNGDL 276
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
Q R V+ +F+ + ++LVATDVAARGLDI I V N+DL D + + HR+GRTGRA
Sbjct: 277 SQDARIQVLNRFRNGQVKVLVATDVAARGLDIDDISHVFNFDLPDDPEVYVHRVGRTGRA 336
Query: 129 GNKGVAYTLVTDKDK 143
G +G+A +L+T KD+
Sbjct: 337 GREGIAISLLTPKDR 351
>gi|384422265|ref|YP_005631624.1| dead-box ATP-dependent rna helicase ydbr [Treponema pallidum subsp.
pallidum str. Chicago]
gi|291060131|gb|ADD72866.1| dead-box ATP-dependent rna helicase ydbr [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 644
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 70/101 (69%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + +A+ +A SL + Y V LHGD+ QS+R ++ +F+ + RILVATDVAARG
Sbjct: 284 LVFCQTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARG 343
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+DI I VVNY + D T+THR+GRTGRAG++G+A + V
Sbjct: 344 IDIEGITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFV 384
>gi|253741975|gb|EES98832.1| Translation initiation factor eIF-4A, putative [Giardia
intestinalis ATCC 50581]
Length = 391
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 69/96 (71%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA L + + +H ++DQ+ERN ++ +F+ + RIL+AT++ ARG+D+ ++ V+
Sbjct: 271 KELAEKLKSAGHTISCIHSELDQAERNKIMGEFRSGQTRILIATNIIARGIDVQNVSLVI 330
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
NYD+ R+ +T+ HRIGR+GR G KGVA VTDKDK
Sbjct: 331 NYDIPREAETYLHRIGRSGRFGRKGVAINFVTDKDK 366
>gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
15579]
gi|387819068|ref|YP_005679415.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
gi|187772242|gb|EDU36044.1| DEAD/DEAH box helicase [Clostridium sporogenes ATCC 15579]
gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
Length = 524
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 87/134 (64%), Gaps = 4/134 (2%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
Y V +KDK A + R ++ ++E A++ + +EL ++ K Y+V +HGDM
Sbjct: 224 YFAVKNKDKLEA--ICRIID--SEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDM 279
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
Q++R + + KFK+ LVATDVAARG+D+ +I V+NYD+ +D +++ HRIGRTGRA
Sbjct: 280 SQNQRINTLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRA 339
Query: 129 GNKGVAYTLVTDKD 142
+G AY+LVT ++
Sbjct: 340 DKEGTAYSLVTPRE 353
>gi|262392485|ref|YP_003284339.1| ATP-dependent RNA helicase DbpA [Vibrio sp. Ex25]
gi|262336079|gb|ACY49874.1| ATP-dependent RNA helicase DbpA [Vibrio sp. Ex25]
Length = 459
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A+ L K + V+ +HGD++Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QSVADELHRKGFSVIDIHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG+KG+A++ +KD
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKD 351
>gi|302766257|ref|XP_002966549.1| hypothetical protein SELMODRAFT_230807 [Selaginella moellendorffii]
gi|300165969|gb|EFJ32576.1| hypothetical protein SELMODRAFT_230807 [Selaginella moellendorffii]
Length = 581
Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 51/127 (40%), Positives = 74/127 (58%)
Query: 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80
+V LE Q PP L+ + + + L +K +V+ +HG DQ ER ITKF
Sbjct: 381 AEMVYLLECLQQTPPPVLIFCESKGEVDSIYEYLVLKGVEVVSIHGGKDQEERQDAITKF 440
Query: 81 KRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
K+ +LVATDVA++GLD P I+ V+NYD+ +I+ + HRIGRTGR G G+A T +
Sbjct: 441 KQGRKDVLVATDVASKGLDFPSIQHVINYDMPSEIENYVHRIGRTGRCGKTGIATTFINS 500
Query: 141 KDKDGEL 147
+ + L
Sbjct: 501 RQSESTL 507
>gi|345875861|ref|ZP_08827648.1| ATP-dependent RNA helicase RhlE [Neisseria weaveri LMG 5135]
gi|417956676|ref|ZP_12599628.1| ATP-dependent RNA helicase RhlE [Neisseria weaveri ATCC 51223]
gi|343968158|gb|EGV36390.1| ATP-dependent RNA helicase RhlE [Neisseria weaveri LMG 5135]
gi|343970323|gb|EGV38501.1| ATP-dependent RNA helicase RhlE [Neisseria weaveri ATCC 51223]
Length = 451
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 65/96 (67%)
Query: 42 AMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIP 101
+ ++ +E+LA+ L K + LHGDM QS RN + ++ C+ILVATDVAARG+D+P
Sbjct: 254 STKVMSEQLADELYEKGFSANCLHGDMPQSWRNRTLMDLRKGRCKILVATDVAARGIDVP 313
Query: 102 HIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTL 137
I V+NYDL + + + HRIGRTGRAG G+A T
Sbjct: 314 TITHVINYDLPKQAEDYVHRIGRTGRAGRTGLAITF 349
>gi|333927747|ref|YP_004501326.1| DEAD/DEAH box helicase [Serratia sp. AS12]
gi|333932701|ref|YP_004506279.1| DEAD/DEAH box helicase domain-containing protein [Serratia
plymuthica AS9]
gi|386329570|ref|YP_006025740.1| DEAD/DEAH box helicase [Serratia sp. AS13]
gi|333474308|gb|AEF46018.1| DEAD/DEAH box helicase domain protein [Serratia plymuthica AS9]
gi|333491807|gb|AEF50969.1| DEAD/DEAH box helicase domain protein [Serratia sp. AS12]
gi|333961903|gb|AEG28676.1| DEAD/DEAH box helicase domain protein [Serratia sp. AS13]
Length = 460
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 68/99 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + V LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVYEALEARGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
VVNY+LA D + H HRIGRTGRAG G+A +L T ++ +
Sbjct: 314 VVNYELAFDPEVHVHRIGRTGRAGLNGLAISLCTPQEME 352
>gi|238758478|ref|ZP_04619655.1| ATP-independent RNA helicase dbpA [Yersinia aldovae ATCC 35236]
gi|238703382|gb|EEP95922.1| ATP-independent RNA helicase dbpA [Yersinia aldovae ATCC 35236]
Length = 457
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 67/97 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + VL LHGD++Q +R+ V+ +F CR+LVATDVAARGLDI +
Sbjct: 251 DCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANHSCRVLVATDVAARGLDIKDLAL 310
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVN++LA D + H HRIGRTGRAG G+A +L T ++
Sbjct: 311 VVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQE 347
>gi|85859652|ref|YP_461854.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
gi|85722743|gb|ABC77686.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
Length = 413
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 82/136 (60%), Gaps = 4/136 (2%)
Query: 8 AYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGD 67
A V DK F L R L+ NQE ++ + ++ AE +A ++ L +HG+
Sbjct: 223 AVMFVEMDDKRF--FLERFLK-ENQE-SKVIVFVRTRIRAERVARAMERVGLHSLTIHGE 278
Query: 68 MDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGR 127
DQ+ER SV+ KFK EC +L+ATDV+ARG+DIP + V+NYDL + + HR+GRTGR
Sbjct: 279 KDQAERTSVMRKFKEGECNLLIATDVSARGIDIPDVNYVINYDLPEKAENYVHRVGRTGR 338
Query: 128 AGNKGVAYTLVTDKDK 143
NKG+A + + +K
Sbjct: 339 GDNKGIALSFCSSDEK 354
>gi|420470152|ref|ZP_14968863.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-11]
gi|393087198|gb|EJB87868.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-11]
Length = 492
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYRSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|260770944|ref|ZP_05879873.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii CIP 102972]
gi|260614181|gb|EEX39371.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii CIP 102972]
Length = 460
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A+ L K + V+ LHGDM+Q ER+ + +F + +LVATDVAARGLD+ ++ V
Sbjct: 257 QSVADELHHKGFSVIELHGDMEQRERDQALVQFANKSISVLVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG++G+A + +DK+
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGSQGLAISFFSDKE 351
>gi|451971154|ref|ZP_21924376.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus E0666]
gi|451932970|gb|EMD80642.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus E0666]
Length = 459
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A+ L K + V+ +HGD++Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QSVADELHRKGFSVIDIHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG+KG+A++ +KD
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKD 351
>gi|375129816|ref|YP_004991914.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii NCTC 11218]
gi|315178988|gb|ADT85902.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii NCTC 11218]
Length = 460
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A+ L K + V+ LHGDM+Q ER+ + +F + +LVATDVAARGLD+ ++ V
Sbjct: 257 QSVADELHHKGFSVIELHGDMEQRERDQALVQFANKSISVLVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG++G+A + +DK+
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGSQGLAISFFSDKE 351
>gi|421783988|ref|ZP_16220431.1| ATP-independent RNA helicase DbpA [Serratia plymuthica A30]
gi|407753851|gb|EKF63991.1| ATP-independent RNA helicase DbpA [Serratia plymuthica A30]
Length = 460
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 68/99 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + V LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVYEALEARGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
VVNY+LA D + H HRIGRTGRAG G+A +L T ++ +
Sbjct: 314 VVNYELAFDPEVHVHRIGRTGRAGLNGLAISLCTPQEME 352
>gi|386822547|ref|ZP_10109753.1| ATP-dependent RNA helicase DbpA [Serratia plymuthica PRI-2C]
gi|386380536|gb|EIJ21267.1| ATP-dependent RNA helicase DbpA [Serratia plymuthica PRI-2C]
Length = 460
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 68/99 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + V LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVYEALEARGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
VVNY+LA D + H HRIGRTGRAG G+A +L T ++ +
Sbjct: 314 VVNYELAFDPEVHVHRIGRTGRAGLNGLAISLCTPQEME 352
>gi|380509796|ref|ZP_09853203.1| ATP-dependent RNA helicase DbpA [Xanthomonas sacchari NCPPB 4393]
Length = 458
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A SL + L LHGDM+Q +R+ V+ +F + C +LVA+DVAARGLD+ + V+
Sbjct: 255 DEVAGSLQQFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLAAVI 314
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NY+L D +T+ HRIGRTGRAG G+A +LV ++
Sbjct: 315 NYELPTDTETYRHRIGRTGRAGKHGLALSLVAPRE 349
>gi|254585603|ref|XP_002498369.1| ZYRO0G08580p [Zygosaccharomyces rouxii]
gi|238941263|emb|CAR29436.1| ZYRO0G08580p [Zygosaccharomyces rouxii]
Length = 539
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 74/122 (60%)
Query: 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
L+R + ++ L+ + A + N+L YDV +HGD+ Q +R S + FK
Sbjct: 363 ELLRKYQSGAKKDDKVLIFALYKKEASRVENNLKYNGYDVAAIHGDLSQQQRTSALNDFK 422
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141
+ +L+ATDVAARGLDIP+++TV+N ++ + HRIGRTGRAG G A+TL TD
Sbjct: 423 AGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTDN 482
Query: 142 DK 143
+K
Sbjct: 483 EK 484
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 26/49 (53%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEE 49
RAG G A+TL TD +K AG LV L GANQ VP L +E
Sbjct: 468 RAGQTGTAHTLFTDNEKHLAGALVNVLNGANQPVPEELKKFGTHTKRKE 516
>gi|420502234|ref|ZP_15000775.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-41]
gi|393153514|gb|EJC53807.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-41]
Length = 492
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMVFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|294954212|ref|XP_002788055.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
gi|239903270|gb|EER19851.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
Length = 731
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Query: 11 LVTDKDKEF---AGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVL---LL 64
+V +KD +F + +L L+ A +E L+ + + A ELA + ++E+ L L
Sbjct: 434 VVEEKDDKFNWLSENLPHILDDAQEEDGQVLIFVNQKSGASELA--VAIREFMSLPCEAL 491
Query: 65 HGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGR 124
HGD DQ++R ++ F+ ++ ++LVATDVA+RGLDIP ++ V+ YD++ + THTHR+GR
Sbjct: 492 HGDSDQNDRMKIMADFRSRKTKVLVATDVASRGLDIPAVKEVICYDMSNTLTTHTHRLGR 551
Query: 125 TGRAGNKGVAYTLVTDKDKDGELRSQ 150
TGRAG+ G A TL+ KD ++ ++
Sbjct: 552 TGRAGHTGHATTLLVRKDNSAKMAAE 577
>gi|254230057|ref|ZP_04923456.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
gi|151937445|gb|EDN56304.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
Length = 471
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A+ L K + V+ +HGD++Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 269 QSVADELHRKGFSVIDIHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVDNLDAVF 328
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG+KG+A++ +KD
Sbjct: 329 NFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKD 363
>gi|51245542|ref|YP_065426.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
gi|50876579|emb|CAG36419.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila
LSv54]
Length = 632
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
Y L+ + DK A V +E V AL+ + ELAN L + + L GD+
Sbjct: 272 YYLINNSDKIAAITRVFEVE----TVESALIFARTRATVSELANELISRGFAAEGLSGDL 327
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
Q R V+++FK+ + ++LVATDVAARGLDI I V NYDL D + + HRIGRTGRA
Sbjct: 328 SQEARTRVLSRFKKGQIKVLVATDVAARGLDIDDISHVFNYDLPEDPEVYVHRIGRTGRA 387
Query: 129 GNKGVAYTLVTDKDK 143
G G A +LVT +D+
Sbjct: 388 GRSGTAISLVTLRDR 402
>gi|389818136|ref|ZP_10208577.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
gi|388464068|gb|EIM06404.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
Length = 507
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L ++ Y +HGD+ Q++R SV+ +FK + ILVATDVAARGLDI + V
Sbjct: 254 DELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKIDILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D +++ HRIGRTGRAG KGVA T VT ++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKKGVAVTFVTPRE 348
>gi|270262252|ref|ZP_06190524.1| hypothetical protein SOD_b04600 [Serratia odorifera 4Rx13]
gi|270044128|gb|EFA17220.1| hypothetical protein SOD_b04600 [Serratia odorifera 4Rx13]
Length = 460
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 68/99 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + V LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 254 DCQSVYEALEARGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELEL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
VVNY+LA D + H HRIGRTGRAG G+A +L T ++ +
Sbjct: 314 VVNYELAFDPEVHVHRIGRTGRAGLNGLAISLCTPQEME 352
>gi|255728265|ref|XP_002549058.1| hypothetical protein CTRG_03355 [Candida tropicalis MYA-3404]
gi|240133374|gb|EER32930.1| hypothetical protein CTRG_03355 [Candida tropicalis MYA-3404]
Length = 531
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Query: 14 DKDKEFAGHLVRNLEGANQEVPPALMNLAM-QLNAEELANSLTVKEYDVLLLHGDMDQSE 72
DK+K+ +L+ +G N + ++ A+ + A + N L + V +HGD+ Q +
Sbjct: 347 DKEKKLI-NLLHKYQGNNNDSENKILVFALYKKEASRIENLLKRNRFQVAAIHGDLSQQQ 405
Query: 73 RNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG 132
R + FK +C +L+ATDVAARGLDIP+++ V+N I+ + HRIGRTGRAG G
Sbjct: 406 RTQALNSFKSGQCNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGRAGKTG 465
Query: 133 VAYTLVTDKDK 143
+A+TL T+ +K
Sbjct: 466 IAHTLFTEDEK 476
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNL 41
RAG G+A+TL T+ +K +G L L GANQ VP L+
Sbjct: 460 RAGKTGIAHTLFTEDEKHLSGALCNILRGANQPVPDELLKF 500
>gi|293395719|ref|ZP_06640001.1| ATP-independent RNA helicase DbpA [Serratia odorifera DSM 4582]
gi|291421656|gb|EFE94903.1| ATP-independent RNA helicase DbpA [Serratia odorifera DSM 4582]
Length = 445
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 67/97 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + +L + VL LHGD++Q +R+ V+ +F + CR+LVATDVAARGLDI +
Sbjct: 239 DCQSVFEALEARGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKDLEL 298
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VVNY+L+ D + H HRIGRTGRAG G+A +L ++
Sbjct: 299 VVNYELSFDPEVHVHRIGRTGRAGMSGLAISLCAPQE 335
>gi|310658279|ref|YP_003936000.1| atp-dependent rna helicase, dead/deah box family [[Clostridium]
sticklandii]
gi|308825057|emb|CBH21095.1| atp-dependent rna helicase, dead/deah box family [[Clostridium]
sticklandii]
Length = 423
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 79/121 (65%), Gaps = 2/121 (1%)
Query: 24 VRNLEGANQEVPP--ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
+++LE A +E P A++ + A EL +++ YDV +LHGD Q++R +++ +F+
Sbjct: 228 LQSLEMALKEFKPFMAMIFCKSKERANELYDNMVNLRYDVEILHGDFSQNKRENIMKRFR 287
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141
+ LV TD++ARG+DI I V NYD+ R I+ + HR+GRTGRAG KG+A + V DK
Sbjct: 288 ELKFPFLVTTDISARGMDIDGITHVFNYDIPRQIEYYIHRVGRTGRAGEKGIAVSFVADK 347
Query: 142 D 142
+
Sbjct: 348 E 348
>gi|224068070|ref|XP_002188600.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Taeniopygia
guttata]
Length = 1031
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ +V +++ +F L L G QE ++ + Q +A+ L L Y L LHG +
Sbjct: 596 HVIVIEEENKFLKLL--ELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGI 653
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
DQ +R+S+I FK C++LVAT VAARGLD+ + VVNY + + HR GRTGRA
Sbjct: 654 DQYDRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRA 713
Query: 129 GNKGVAYTLVTD 140
GNKG AYT +T+
Sbjct: 714 GNKGYAYTFITE 725
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK 57
RAGNKG AYT +T+ +AG +++ LE + +PP L L ++ A +K
Sbjct: 712 RAGNKGYAYTFITEDQARYAGDIIKALELSGNPIPPDLEKLWADFKDQQKAEGKLIK 768
>gi|19075484|ref|NP_587984.1| U5 snRNP-associated protein Prp28 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74654533|sp|Q9Y7T7.1|PRP28_SCHPO RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
gi|4539604|emb|CAB40015.1| U5 snRNP-associated protein Prp28 (predicted) [Schizosaccharomyces
pombe]
Length = 662
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 81/134 (60%), Gaps = 2/134 (1%)
Query: 11 LVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQ 70
+++D K++ V + +N+ PP ++ + ++ N E +A L + + LHG Q
Sbjct: 495 MISDDSKKW--RRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQ 552
Query: 71 SERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130
+R I + + + ILVATD+A RG+DIP++ V+NY++A+ I+ +THRIGRTGRAG
Sbjct: 553 EQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGK 612
Query: 131 KGVAYTLVTDKDKD 144
G A T + +D D
Sbjct: 613 SGTAITFLGPEDTD 626
>gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
Length = 506
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L ++ Y +HGD+ Q++R SV+ +FK + ILVATDVAARGLDI + V
Sbjct: 254 DELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKIDILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D +++ HRIGRTGRAG KGVA T VT ++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKKGVAVTFVTPRE 348
>gi|91200410|emb|CAJ73457.1| strongly similar to ATP-dependent RNA helicase [Candidatus Kuenenia
stuttgartiensis]
Length = 524
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 84/141 (59%), Gaps = 16/141 (11%)
Query: 2 AGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDV 61
A +K A + D +K+F G L+ +++ + +A+ L + YD
Sbjct: 225 AADKFEALCRIIDIEKDFYG----------------LVFCRTKIDVDAVASHLIERGYDA 268
Query: 62 LLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHR 121
LHGD+ QS R ++ KFK+++ IL+ATDVAARGLDI ++ V+NY L +D +++ HR
Sbjct: 269 DALHGDISQSLREKILAKFKKRQINILIATDVAARGLDIHNLSHVINYSLPQDPESYVHR 328
Query: 122 IGRTGRAGNKGVAYTLVTDKD 142
IGRTGRAG G+A T +T ++
Sbjct: 329 IGRTGRAGKGGIAITFITPEE 349
>gi|359395930|ref|ZP_09188982.1| ATP-independent RNA helicase dbpA [Halomonas boliviensis LC1]
gi|357970195|gb|EHJ92642.1| ATP-independent RNA helicase dbpA [Halomonas boliviensis LC1]
Length = 477
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 65/95 (68%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A LT + + L+GD++Q +R+ ++ F Q ILVATDVAARGLDI + V
Sbjct: 274 QAVAEQLTDAGFSAVALNGDLEQKDRDRILILFSNQSASILVATDVAARGLDIAQLDAVF 333
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NY +AR++D H HR+GRTGRAG G+A TLVT K+
Sbjct: 334 NYQIARELDVHVHRVGRTGRAGASGIACTLVTPKE 368
>gi|433546481|ref|ZP_20502800.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
gi|432182198|gb|ELK39780.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
Length = 484
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 70/97 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +LT + Y +HGD++Q++R+SV+ KFK +LVATDVAARGLDI + V
Sbjct: 235 DELSEALTKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEVLVATDVAARGLDISGVTHVF 294
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++ HRIGRTGRAG G+A T VT ++ D
Sbjct: 295 NFDIPQDSESYVHRIGRTGRAGKTGLAITFVTSREID 331
>gi|398816782|ref|ZP_10575424.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
gi|398031995|gb|EJL25360.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
Length = 520
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 70/97 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +LT + Y +HGD++Q++R+SV+ KFK +LVATDVAARGLDI + V
Sbjct: 254 DELSEALTKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEVLVATDVAARGLDISGVTHVF 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++ HRIGRTGRAG G+A T VT ++ D
Sbjct: 314 NFDIPQDAESYVHRIGRTGRAGKTGLAITFVTSREID 350
>gi|340057268|emb|CCC51612.1| putative DEAD box RNA helicase [Trypanosoma vivax Y486]
Length = 579
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 47/101 (46%), Positives = 69/101 (68%)
Query: 43 MQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPH 102
M+ A+ L L YD + +HGD +Q +R+ ++++F++ LVATDVAARGLDI
Sbjct: 364 MKRTADNLEWQLKRWGYDAMAIHGDKEQHQRDFILSRFRKDPQLCLVATDVAARGLDIKE 423
Query: 103 IRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+ TV+NYD ID + HR+GRTGRAG KG A+TL+T +++
Sbjct: 424 LETVINYDFPMQIDDYVHRVGRTGRAGAKGEAFTLITKREQ 464
>gi|399048154|ref|ZP_10739853.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398053887|gb|EJL46038.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 503
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 70/97 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +LT + Y +HGD++Q++R+SV+ KFK +LVATDVAARGLDI + V
Sbjct: 254 DELSEALTKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEVLVATDVAARGLDISGVTHVF 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++ HRIGRTGRAG G+A T VT ++ D
Sbjct: 314 NFDIPQDSESYVHRIGRTGRAGKTGLAITFVTSREID 350
>gi|294954210|ref|XP_002788054.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
gi|239903269|gb|EER19850.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
Length = 733
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Query: 11 LVTDKDKEF---AGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVL---LL 64
+V +KD +F + +L L+ A +E L+ + + A ELA + ++E+ L L
Sbjct: 436 VVEEKDDKFNWLSENLPHILDDAQEEDGQVLIFVNQKSGASELA--VAIREFMSLPCEAL 493
Query: 65 HGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGR 124
HGD DQ++R ++ F+ ++ ++LVATDVA+RGLDIP ++ V+ YD++ + THTHR+GR
Sbjct: 494 HGDSDQNDRMKIMADFRSRKTKVLVATDVASRGLDIPAVKEVICYDMSNTLTTHTHRLGR 553
Query: 125 TGRAGNKGVAYTLVTDKDKDGELRSQ 150
TGRAG+ G A TL+ KD ++ ++
Sbjct: 554 TGRAGHTGHATTLLVRKDNSAKMAAE 579
>gi|194365407|ref|YP_002028017.1| ATP-dependent RNA helicase DbpA [Stenotrophomonas maltophilia
R551-3]
gi|194348211|gb|ACF51334.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
R551-3]
Length = 458
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 68/98 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +E+ANSL + L LHGDM+Q +R V+ + C +LVA+DVAARGLD+ +
Sbjct: 253 DVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCNVLVASDVAARGLDVEELAA 312
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
V+NY+L D++++ HR+GRTGRAG G+A +LV ++K
Sbjct: 313 VINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREK 350
>gi|408824009|ref|ZP_11208899.1| ATP-dependent RNA helicase DbpA [Pseudomonas geniculata N1]
Length = 458
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 68/98 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +E+ANSL + L LHGDM+Q +R V+ + C +LVA+DVAARGLD+ +
Sbjct: 253 DVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCNVLVASDVAARGLDVEELAA 312
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
V+NY+L D++++ HR+GRTGRAG G+A +LV ++K
Sbjct: 313 VINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREK 350
>gi|421721165|ref|ZP_16160442.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R055a]
gi|407225949|gb|EKE95719.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R055a]
Length = 492
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 68/104 (65%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R++ I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRHASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|345877637|ref|ZP_08829378.1| 10 kDa chaperonin [endosymbiont of Riftia pachyptila (vent Ph05)]
gi|344225308|gb|EGV51670.1| 10 kDa chaperonin [endosymbiont of Riftia pachyptila (vent Ph05)]
Length = 462
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 72/107 (67%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ + +E+A+ L + L LHGD++Q R+ + +F + ILVATDVA+R
Sbjct: 246 ALVFCNTKRETQEVADELHDLGFSALALHGDLEQKARDQTLVRFANKSASILVATDVASR 305
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
GLDI + V+NY L+R+++ H HRIGRTGRAG+KG+A TL DK++
Sbjct: 306 GLDIDALDAVINYHLSRELEVHVHRIGRTGRAGSKGIACTLYNDKER 352
>gi|344207087|ref|YP_004792228.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia JV3]
gi|343778449|gb|AEM51002.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
JV3]
Length = 458
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 68/98 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +E+ANSL + L LHGDM+Q +R V+ + C +LVA+DVAARGLD+ +
Sbjct: 253 DVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCNVLVASDVAARGLDVEELAA 312
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
V+NY+L D++++ HR+GRTGRAG G+A +LV ++K
Sbjct: 313 VINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREK 350
>gi|345863069|ref|ZP_08815282.1| ATP-independent RNA helicase DbpA [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345125952|gb|EGW55819.1| ATP-independent RNA helicase DbpA [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 462
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 72/107 (67%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ + +E+A+ L + L LHGD++Q R+ + +F + ILVATDVA+R
Sbjct: 246 ALVFCNTKRETQEVADELHDLGFSALALHGDLEQKARDQTLVRFANKSASILVATDVASR 305
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
GLDI + V+NY L+R+++ H HRIGRTGRAG+KG+A TL DK++
Sbjct: 306 GLDIDALDAVINYHLSRELEVHVHRIGRTGRAGSKGIACTLYNDKER 352
>gi|334137246|ref|ZP_08510689.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF7]
gi|333605235|gb|EGL16606.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF7]
Length = 535
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 70/97 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L + Y LHGD+ Q++R++V+ KF+ +LVATDVAARGLD+ + VV
Sbjct: 254 DELAEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIEVLVATDVAARGLDVSGVTHVV 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+DL +D +++ HRIGRTGRAG +G A+T VT ++ D
Sbjct: 314 NFDLPQDPESYVHRIGRTGRAGKEGTAWTFVTPREID 350
>gi|319956997|ref|YP_004168260.1| dead/deah box helicase domain-containing protein [Nitratifractor
salsuginis DSM 16511]
gi|319419401|gb|ADV46511.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
DSM 16511]
Length = 462
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 77/120 (64%), Gaps = 2/120 (1%)
Query: 23 LVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82
+VR LE N + AL+ M+ + LA L ++ LHGD+DQ ER++++ F+R
Sbjct: 230 IVRLLETENYD--KALIFCRMKREVDRLAEELKALGFNAAGLHGDIDQMERDAIVKSFRR 287
Query: 83 QECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
E RIL+ATDVAARGLDI ++ V NY + D ++ HRIGRTGRAG +G A TL + ++
Sbjct: 288 GETRILIATDVAARGLDIKNVTHVFNYHIPFDPQSYVHRIGRTGRAGKRGRAITLASTEE 347
>gi|386718217|ref|YP_006184543.1| ATP-dependent RNA helicase DbpA [Stenotrophomonas maltophilia D457]
gi|384077779|emb|CCH12368.1| ATP-dependent RNA helicase DbpA [Stenotrophomonas maltophilia D457]
Length = 458
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 68/98 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +E+ANSL + L LHGDM+Q +R V+ + C +LVA+DVAARGLD+ +
Sbjct: 253 DVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCNVLVASDVAARGLDVEELAA 312
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
V+NY+L D++++ HR+GRTGRAG G+A +LV ++K
Sbjct: 313 VINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREK 350
>gi|343512839|ref|ZP_08749956.1| ATP-dependent RNA helicase DbpA [Vibrio scophthalmi LMG 19158]
gi|343514306|ref|ZP_08751380.1| ATP-dependent RNA helicase DbpA [Vibrio sp. N418]
gi|342794527|gb|EGU30292.1| ATP-dependent RNA helicase DbpA [Vibrio scophthalmi LMG 19158]
gi|342800315|gb|EGU35851.1| ATP-dependent RNA helicase DbpA [Vibrio sp. N418]
Length = 458
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 67/93 (72%)
Query: 50 LANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109
+A+ L + + V LHGD++Q ER+ +T F + ILVATDVAARGLD+ ++ V N+
Sbjct: 258 VADELHNRGFSVTELHGDLEQRERDQALTMFANKSISILVATDVAARGLDVDNLDAVFNF 317
Query: 110 DLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+L+RD + H HRIGRTGRAG+KG A++ +DKD
Sbjct: 318 ELSRDPEVHVHRIGRTGRAGSKGQAFSFYSDKD 350
>gi|91228572|ref|ZP_01262491.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus 12G01]
gi|269964706|ref|ZP_06178944.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
gi|91187851|gb|EAS74164.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus 12G01]
gi|269830605|gb|EEZ84826.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
Length = 459
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A+ L K + V+ +HGD++Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QSVADELHHKGFSVIDIHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG+KG+A++ +KD
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKD 351
>gi|375264317|ref|YP_005021760.1| ATP-dependent RNA helicase DbpA [Vibrio sp. EJY3]
gi|369839641|gb|AEX20785.1| ATP-dependent RNA helicase DbpA [Vibrio sp. EJY3]
Length = 459
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A+ L + + V+ LHGD++Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QSVADELHHRGFSVIDLHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG+KG+A++ +KD
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKD 351
>gi|269468408|gb|EEZ80073.1| hypothetical protein Sup05_1317 [uncultured SUP05 cluster
bacterium]
Length = 614
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 67/95 (70%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
EL+ L+ + + ++GD+ QS+R +I KFK+ ILVATDVAARGLD+P I VVN
Sbjct: 267 ELSEKLSARGFSAEAINGDIQQSQREKIINKFKKGGIDILVATDVAARGLDVPRISHVVN 326
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
YD+ +D +T+ HRIGRTGRAG +G A V+ +++
Sbjct: 327 YDIPQDAETYVHRIGRTGRAGREGEAILFVSHRER 361
>gi|254523078|ref|ZP_05135133.1| ATP-independent RNA helicase DbpA [Stenotrophomonas sp. SKA14]
gi|219720669|gb|EED39194.1| ATP-independent RNA helicase DbpA [Stenotrophomonas sp. SKA14]
Length = 458
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 68/98 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +E+ANSL + L LHGDM+Q +R V+ + C +LVA+DVAARGLD+ +
Sbjct: 253 DVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCNVLVASDVAARGLDVEELAA 312
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
V+NY+L D++++ HR+GRTGRAG G+A +LV ++K
Sbjct: 313 VINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREK 350
>gi|226315226|ref|YP_002775122.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
gi|226098176|dbj|BAH46618.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
100599]
Length = 513
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 70/97 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +LT + Y +HGD++Q++R+SV+ KFK +LVATDVAARGLDI + V
Sbjct: 254 DELSEALTKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEVLVATDVAARGLDISGVTHVF 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++ HRIGRTGRAG G+A T VT ++ D
Sbjct: 314 NFDIPQDSESYVHRIGRTGRAGKTGLAITFVTSREID 350
>gi|407849101|gb|EKG03950.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
Length = 595
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 51/114 (44%), Positives = 72/114 (63%)
Query: 30 ANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILV 89
AN+ L+ + A++L L YD + +HGD +Q +R ++ +F++ LV
Sbjct: 351 ANRRNQRVLIFCKTKRTADDLEWQLKRWGYDAMAIHGDKEQRQREFILERFRKDPRLCLV 410
Query: 90 ATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
ATDVAARGLDI + TV+NYD ID + HRIGRTGRAG KG A+TL+T ++K
Sbjct: 411 ATDVAARGLDIKELETVINYDFPMQIDDYVHRIGRTGRAGAKGEAFTLITKREK 464
>gi|356546172|ref|XP_003541505.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 52B-like [Glycine
max]
Length = 586
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 78/137 (56%), Gaps = 7/137 (5%)
Query: 12 VTDKDKEFAGHLVRNL-----EGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHG 66
V D DK HL+++L G N + L+ + + A+ L L + + +HG
Sbjct: 311 VQDMDKR--DHLIKHLRRQSVHGFNGKHALTLVFVETKRGADVLEGWLLRSGFSAVAIHG 368
Query: 67 DMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTG 126
D Q ER + FK ILVATDVA+RGLDIPH+ V+N+DL RDID + HRIGRTG
Sbjct: 369 DKVQMERERALRSFKSGVTPILVATDVASRGLDIPHVAHVINFDLPRDIDNYVHRIGRTG 428
Query: 127 RAGNKGVAYTLVTDKDK 143
RAG G+A +DK+
Sbjct: 429 RAGKSGLATAFFSDKNS 445
>gi|88797925|ref|ZP_01113512.1| probable ATP-dependent RNA helicase [Reinekea blandensis MED297]
gi|88779122|gb|EAR10310.1| probable ATP-dependent RNA helicase [Reinekea sp. MED297]
Length = 448
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 74/106 (69%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ ++ AEELAN+L + + V LHG+++Q ERN ++T+F+ ++VATD+AAR
Sbjct: 245 AIVFTKTRVQAEELANNLRLHQKRVATLHGEIEQDERNRIMTRFRDGVVDVIVATDLAAR 304
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
GLD+ + VVN+D+A+ D H HR+GRTGRAG G+A +LV D
Sbjct: 305 GLDVEGVDLVVNFDIAQSGDEHVHRVGRTGRAGQSGLAVSLVAAHD 350
>gi|307189252|gb|EFN73695.1| Probable ATP-dependent RNA helicase DDX46 [Camponotus floridanus]
Length = 1028
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ +V ++D++F L + G Q+ ++ + Q NA+ L L Y + LHG +
Sbjct: 590 HVVVLEEDQKFYKLL--EILGHYQDKGSIIIFVDKQENADTLLKDLMKASYSCMSLHGGI 647
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
DQ +R+S I FK ++LVAT VAARGLD+ H+ VVNYD + + HR GRTGRA
Sbjct: 648 DQCDRDSTILDFKAGRTKLLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRCGRTGRA 707
Query: 129 GNKGVAYTLVTDK 141
GNKG AYT +T +
Sbjct: 708 GNKGYAYTFITSE 720
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV 56
RAGNKG AYT +T + + +AG ++R E A VP L L A + A+ V
Sbjct: 706 RAGNKGYAYTFITSEQERYAGDILRAHELAGVPVPEPLRQLWEGYKARQAADGKQV 761
>gi|357612893|gb|EHJ68220.1| ATP-dependent RNA helicase belle-like protein [Danaus plexippus]
Length = 717
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 73/117 (62%)
Query: 27 LEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECR 86
L+ N+E L+ + + A++L + L Y V +HGD Q ER + +F+ +
Sbjct: 492 LQRNNEEDQLTLVFVETKKGADQLEDFLYADGYPVTSIHGDRTQREREDALRRFRTGQTP 551
Query: 87 ILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
ILVAT VAARGLDIPH+R V+N+DL D++ + HRIGRTGR GN GVA + D ++
Sbjct: 552 ILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDSNR 608
>gi|349806887|gb|AEQ19570.1| PL10-like protein [Macrobrachium nipponense]
Length = 709
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 69/113 (61%)
Query: 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT 91
QE L+ + + A+ L L Y V +HGD Q ER + F+ C ILVAT
Sbjct: 484 QEESLTLVFVETKKGADALEEFLYRHGYPVTSIHGDRSQREREDALRVFRSGRCPILVAT 543
Query: 92 DVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
VAARGLDIPH++ V+N+DL DI+ + HRIGRTGR GN G+A + DK+++
Sbjct: 544 AVAARGLDIPHVKHVINFDLPSDIEEYVHRIGRTGRMGNLGLATSFFNDKNRN 596
>gi|148973902|ref|ZP_01811435.1| ATP-dependent RNA helicase DbpA [Vibrionales bacterium SWAT-3]
gi|145965599|gb|EDK30847.1| ATP-dependent RNA helicase DbpA [Vibrionales bacterium SWAT-3]
Length = 459
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ + + L+ + + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVTDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG+KGVA + ++K+
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKE 351
>gi|456734270|gb|EMF59092.1| ATP-dependent RNA helicase DbpA [Stenotrophomonas maltophilia EPM1]
Length = 458
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 68/98 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +E+ANSL + L LHGDM+Q +R V+ + C +LVA+DVAARGLD+ +
Sbjct: 253 DVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCNVLVASDVAARGLDVEELAA 312
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
V+NY+L D++++ HR+GRTGRAG G+A +LV ++K
Sbjct: 313 VINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREK 350
>gi|338706722|ref|YP_004673490.1| putative ATP-dependent RNA helicase [Treponema paraluiscuniculi
Cuniculi A]
gi|335344783|gb|AEH40699.1| probable ATP-dependent RNA helicase [Treponema paraluiscuniculi
Cuniculi A]
Length = 647
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 48/93 (51%), Positives = 67/93 (72%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+A+ +A SL + Y V LHGD+ QS+R ++ +F+ + RILVATDVAARG+DI I
Sbjct: 297 DADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGIDIEGITH 356
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
VVNY + D T+THR+GRTGRAG++G+A + V
Sbjct: 357 VVNYSIPHDSATYTHRVGRTGRAGSQGIAISFV 389
>gi|146329248|ref|YP_001209905.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
gi|146232718|gb|ABQ13696.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
Length = 442
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 72/114 (63%)
Query: 30 ANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILV 89
A++ V ++ A + E +A+ L + LHGD+ Q +RN +I +F+ + +LV
Sbjct: 239 ADEAVTQCIVFTATKSTTETVAHHLYENGFQAQFLHGDLQQQKRNRIIERFRNGQINVLV 298
Query: 90 ATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
ATD+AARG+DIP I V+NYDL R + + HRIGR+GRAG GVA LV+ D+
Sbjct: 299 ATDIAARGIDIPAISHVINYDLPRQSEDYVHRIGRSGRAGRSGVALNLVSLTDR 352
>gi|373858038|ref|ZP_09600777.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372452260|gb|EHP25732.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 485
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 68/97 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL L + Y +HGD+ Q++R+ VI +FK Q I+VATDVAARGLDI + V
Sbjct: 254 DELVEGLIKRGYSAEGIHGDIPQTKRDQVIRRFKEQTIDIMVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++ HRIGRTGRAGNKG+A T V+ ++ D
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGNKGLAVTFVSPREID 350
>gi|320158479|ref|YP_004190857.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus MO6-24/O]
gi|319933792|gb|ADV88655.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus MO6-24/O]
Length = 459
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ + + L + + V+ LHGDM+Q ER +T F + ILVATDVAARGLD+ ++ V+
Sbjct: 256 QNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVATDVAARGLDVDNLDAVI 315
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG KG+A + ++K+
Sbjct: 316 NFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKE 350
>gi|73662111|ref|YP_300892.1| ATP-dependent RNA helicase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123643052|sp|Q49Z29.1|Y802_STAS1 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SSP0802
gi|72494626|dbj|BAE17947.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 506
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG KGVA T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMD 350
>gi|37676305|ref|NP_936701.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus YJ016]
gi|37200846|dbj|BAC96671.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
Length = 459
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ + + L + + V+ LHGDM+Q ER +T F + ILVATDVAARGLD+ ++ V+
Sbjct: 256 QNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVATDVAARGLDVDNLDAVI 315
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG KG+A + ++K+
Sbjct: 316 NFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKE 350
>gi|410458653|ref|ZP_11312411.1| DEAD/DEAH box helicase [Bacillus azotoformans LMG 9581]
gi|409931248|gb|EKN68234.1| DEAD/DEAH box helicase [Bacillus azotoformans LMG 9581]
Length = 501
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 68/95 (71%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +L + Y +HGD+ Q++R+SV+ KFK +LVATDVAARGLDI + V
Sbjct: 254 DELSEALNTRGYAAEGIHGDLTQAKRSSVLKKFKAGTIEVLVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D +++ HRIGRTGRAG G+AYT VT ++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKTGLAYTFVTPRE 348
>gi|325923904|ref|ZP_08185503.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
gi|325545614|gb|EGD16869.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
Length = 458
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 80/130 (61%), Gaps = 6/130 (4%)
Query: 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE 72
T + K AG L+R N E N +++ E+A SL + L LHGDM+Q +
Sbjct: 226 TYRQKAVAGLLLRF----NPESSVVFCNTRKEVD--EVAGSLQEFGFSALALHGDMEQRD 279
Query: 73 RNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG 132
R+ V+ +F + C +LVA+DVAARGLD+ + VVNY+L D +T+ HRIGRT RAG +G
Sbjct: 280 RDEVLVRFVNRSCNVLVASDVAARGLDVEDLAAVVNYELPTDTETYRHRIGRTARAGKRG 339
Query: 133 VAYTLVTDKD 142
+A +LV ++
Sbjct: 340 LALSLVASRE 349
>gi|304311852|ref|YP_003811450.1| Superfamily II DNA and RNA helicases [gamma proteobacterium HdN1]
gi|301797585|emb|CBL45806.1| Superfamily II DNA and RNA helicases [gamma proteobacterium HdN1]
Length = 458
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 66/96 (68%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
+E+A++L + + LHGDM+Q +R+ V+ KF + C LVATDVAARGLDI + V
Sbjct: 255 CDEVADALNAQGFYAQTLHGDMEQRDRDLVLLKFSNRSCPYLVATDVAARGLDIKDLAAV 314
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VN D+A D D H HRIGRTGRAG KG+A +L + +
Sbjct: 315 VNVDVAFDPDVHIHRIGRTGRAGQKGLALSLCSPAE 350
>gi|392894334|ref|NP_001254858.1| Protein LAF-1, isoform a [Caenorhabditis elegans]
gi|373220605|emb|CCD73871.1| Protein LAF-1, isoform a [Caenorhabditis elegans]
Length = 643
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 67/98 (68%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A +LA L + Y+V+ +HGD+ Q ER + F+ ILVAT VAARGLDIP+++ V
Sbjct: 440 ASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHV 499
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYDL D+D + HRIGRTGR GN G+A + DK+++
Sbjct: 500 INYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRN 537
>gi|227499384|ref|ZP_03929495.1| ATP-dependent RNA helicase, partial [Anaerococcus tetradius ATCC
35098]
gi|227218446|gb|EEI83689.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098]
Length = 553
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 78/122 (63%), Gaps = 2/122 (1%)
Query: 23 LVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82
L R LE N ++ N +++ +L LT K Y V LHGD+ QS R+ V+ KF+
Sbjct: 244 LTRLLEINNPKLAIVFCNTKRKVD--KLVEELTKKSYLVDGLHGDLKQSARDQVMKKFRN 301
Query: 83 QECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+ +IL+ATDVAARGLDI + V+NYDL + + + HRIGRT RAG GV+Y+L+ +D
Sbjct: 302 KTIQILIATDVAARGLDIDDVDLVINYDLPQLDEYYVHRIGRTARAGKSGVSYSLIAGRD 361
Query: 143 KD 144
+D
Sbjct: 362 RD 363
>gi|83745783|ref|ZP_00942840.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
gi|207743697|ref|YP_002260089.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
gi|83727473|gb|EAP74594.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
gi|206595096|emb|CAQ62023.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
Length = 631
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 67/106 (63%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA LT + LHGDM Q RN +T +R RILVATDVAAR
Sbjct: 328 AIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNRTLTALRRGHLRILVATDVAAR 387
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG G+A LV D
Sbjct: 388 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 433
>gi|383320415|ref|YP_005381256.1| Superfamily II DNA and RNA helicase [Methanocella conradii HZ254]
gi|379321785|gb|AFD00738.1| Superfamily II DNA and RNA helicase [Methanocella conradii HZ254]
Length = 456
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 72/106 (67%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ + + +ELA +L+ + Y +HGD+ QS+R+SV+ F+ +LVATDVAAR
Sbjct: 243 AIVFVRTKRRVDELARALSERGYQAEGIHGDLAQSKRDSVMRSFREGATEVLVATDVAAR 302
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
GLDI + V N+D+ +D D + HRIGRTGRAG KG+A T VT ++
Sbjct: 303 GLDISGVTHVYNFDIPQDPDGYVHRIGRTGRAGKKGIAITFVTPRE 348
>gi|393762817|ref|ZP_10351443.1| ATP-dependent RNA helicase DbpA [Alishewanella agri BL06]
gi|392606439|gb|EIW89324.1| ATP-dependent RNA helicase DbpA [Alishewanella agri BL06]
Length = 461
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++L + L + + V LHGD++Q ER + +F ++LVATDVAARGLDI + V+
Sbjct: 257 QQLYSELQQQGFSVAALHGDLEQREREQQLLQFANGSLQLLVATDVAARGLDIEKLDLVI 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NY LA D++THTHRIGRTGRAG++G+A +L T D
Sbjct: 317 NYQLAHDVETHTHRIGRTGRAGSEGLACSLYTVDD 351
>gi|386334065|ref|YP_006030236.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
gi|334196515|gb|AEG69700.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
Length = 599
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 67/106 (63%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA LT + LHGDM Q RN +T +R RILVATDVAAR
Sbjct: 296 AIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNRTLTALRRGHLRILVATDVAAR 355
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG G+A LV D
Sbjct: 356 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 401
>gi|421899355|ref|ZP_16329720.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206590561|emb|CAQ37523.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
Length = 633
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 67/106 (63%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA LT + LHGDM Q RN +T +R RILVATDVAAR
Sbjct: 328 AIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNRTLTALRRGHLRILVATDVAAR 387
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG G+A LV D
Sbjct: 388 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 433
>gi|428174215|gb|EKX43112.1| hypothetical protein GUITHDRAFT_159806 [Guillardia theta CCMP2712]
Length = 1097
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 17 KEFAGHLVRNLE--GANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERN 74
+E + +R LE G E L+ + Q + +EL L + Y L LHG MDQ++R+
Sbjct: 652 REASTRFLRTLELLGEWYEKGQILLFVERQESCDELMGMLIKQGYAALTLHGGMDQADRD 711
Query: 75 SVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVA 134
S + +K Q IL+AT +AARGLD+P + VVNYD + + HR+GRTGRAG KG A
Sbjct: 712 STLADYKNQVANILIATSLAARGLDVPGLNLVVNYDAPSHYEDYVHRVGRTGRAGRKGTA 771
Query: 135 YTLV 138
YT V
Sbjct: 772 YTFV 775
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEE 49
RAG KG AYT V ++ LVR L +N+ VP L +L ++ AE+
Sbjct: 764 RAGRKGTAYTFVDPSQRQLIPDLVRALTLSNRPVPKDLRDLVNEIKAEK 812
>gi|58697110|ref|ZP_00372550.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
endosymbiont of Drosophila simulans]
gi|58698416|ref|ZP_00373327.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
endosymbiont of Drosophila ananassae]
gi|225630895|ref|YP_002727686.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
wRi]
gi|58535071|gb|EAL59159.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
endosymbiont of Drosophila ananassae]
gi|58536598|gb|EAL59931.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
endosymbiont of Drosophila simulans]
gi|225592876|gb|ACN95895.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
wRi]
Length = 402
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A++LA+ L +Y L +HGD+ Q +R VI F+R +I+VATDVA+RGLDIPHI+ V
Sbjct: 247 ADQLAHRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVASRGLDIPHIQHV 306
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+NYD + + HRIGRT RAG +G A + VT +DK
Sbjct: 307 INYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDK 343
>gi|418575592|ref|ZP_13139742.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325994|gb|EHY93122.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 487
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 235 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVAARGLDISGVSHVY 294
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG KGVA T V + D
Sbjct: 295 NFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMD 331
>gi|392894336|ref|NP_001254859.1| Protein LAF-1, isoform b [Caenorhabditis elegans]
gi|226437753|gb|ACO56244.1| putative DEAD-box RNA helicase [Caenorhabditis elegans]
gi|379657028|emb|CCG28150.1| Protein LAF-1, isoform b [Caenorhabditis elegans]
Length = 708
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 67/98 (68%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A +LA L + Y+V+ +HGD+ Q ER + F+ ILVAT VAARGLDIP+++ V
Sbjct: 505 ASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHV 564
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYDL D+D + HRIGRTGR GN G+A + DK+++
Sbjct: 565 INYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRN 602
>gi|374367553|ref|ZP_09625614.1| ATP-dependent RNA helicase [Cupriavidus basilensis OR16]
gi|373100856|gb|EHP41916.1| ATP-dependent RNA helicase [Cupriavidus basilensis OR16]
Length = 659
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 67/106 (63%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA L+ + LHGDM Q RN +T +R RILVATDVAAR
Sbjct: 326 AIVFTATKRDADSLAERLSDTGFAAGALHGDMTQGARNRTLTSLRRGNLRILVATDVAAR 385
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG GVA LV D
Sbjct: 386 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGVAINLVNHGD 431
>gi|300704701|ref|YP_003746304.1| DEAD/DEAH box helicase [Ralstonia solanacearum CFBP2957]
gi|299072365|emb|CBJ43703.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal) (rhlE-like) [Ralstonia
solanacearum CFBP2957]
Length = 603
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 67/106 (63%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA LT + LHGDM Q RN +T +R RILVATDVAAR
Sbjct: 296 AIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNRTLTALRRGHLRILVATDVAAR 355
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG G+A LV D
Sbjct: 356 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 401
>gi|94314203|ref|YP_587412.1| ATP-dependent RNA helicase DbpA [Cupriavidus metallidurans CH34]
gi|93358055|gb|ABF12143.1| ATP-dependent RNA helicase, specific for 23S rRNA [Cupriavidus
metallidurans CH34]
Length = 467
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 64/91 (70%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
+LA+ L + Y L LHGD+DQ +R+ V+ +F + C +LVATDVAARGLDI + V+N
Sbjct: 260 DLADLLRAQGYAALELHGDLDQRDRDQVLVQFANRSCSVLVATDVAARGLDIAQLEAVIN 319
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
D+ D + H HR+GRTGRAG G A++LV+
Sbjct: 320 VDVTPDPEVHVHRVGRTGRAGEAGSAFSLVS 350
>gi|71995514|ref|NP_001021793.1| Protein VBH-1, isoform c [Caenorhabditis elegans]
gi|373220254|emb|CCD72828.1| Protein VBH-1, isoform c [Caenorhabditis elegans]
Length = 660
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 49/97 (50%), Positives = 65/97 (67%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A ELA L ++ + +HGD+ Q ER + F+ +C ILVAT VAARGLDIP++R V
Sbjct: 411 ANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHV 470
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+NYDL D D + HRIGRTGR GN G+A + DK++
Sbjct: 471 INYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNR 507
>gi|421888857|ref|ZP_16319933.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal)(rhlE-like) [Ralstonia
solanacearum K60-1]
gi|378965799|emb|CCF96681.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal)(rhlE-like) [Ralstonia
solanacearum K60-1]
Length = 597
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 67/106 (63%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA LT + LHGDM Q RN +T +R RILVATDVAAR
Sbjct: 296 AIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNRTLTALRRGHLRILVATDVAAR 355
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG G+A LV D
Sbjct: 356 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 401
>gi|251773001|gb|EES53557.1| putative ATP-dependent helicase [Leptospirillum ferrodiazotrophum]
Length = 472
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 66/99 (66%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
AE+LAN L + + LHGD QS+RN V++KF+ + RILVATDVAARGLDI +
Sbjct: 257 GAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRILVATDVAARGLDIDTVTC 316
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
V+NYDL + + + HRIGRTGRAG G A + D++
Sbjct: 317 VINYDLPQSPEDYVHRIGRTGRAGRSGRAISFCHPADRN 355
>gi|189913047|ref|YP_001964936.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167777723|gb|ABZ96023.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
Length = 529
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
Y ++ + ++E A +VR L+ N A++ + A++L ++L+ K Y V LHGD+
Sbjct: 226 YYIIDEAEREIA--VVRILDYENPF--KAIIFTKTKKEADDLKSTLSFKGYPVEALHGDL 281
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
+Q +R V+ +ILVATDVAARGLD+ + V+NY L D +++THRIGRTGRA
Sbjct: 282 NQKQREQVLKSLHDGRVKILVATDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRA 341
Query: 129 GNKGVAYTLVTDKDKDGELR 148
G G A TLVT ++ LR
Sbjct: 342 GKSGKAVTLVTTRESRALLR 361
>gi|334340505|ref|YP_004545485.1| DEAD/DEAH box helicase [Desulfotomaculum ruminis DSM 2154]
gi|334091859|gb|AEG60199.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum ruminis DSM
2154]
Length = 532
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
++L + L + Y + LHGD+ Q +RN+V+ +F+ E +LVATDVAARGLDI +
Sbjct: 258 GVDDLVSGLQARGYTAVSLHGDLSQQQRNTVMRQFRSGEVELLVATDVAARGLDIEGVSH 317
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+NYD+ +D + + HRIGRTGRAG GVA T++T ++
Sbjct: 318 VINYDIPQDPEFYVHRIGRTGRAGRSGVAITIITPRE 354
>gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase [Acidaminococcus fermentans DSM 20731]
gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
DSM 20731]
Length = 544
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL +L + Y+ LHGD+ Q++R+ V+ KF+ + ILVATDVAARGLDI +I VV
Sbjct: 269 DELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVATDVAARGLDIDNITHVV 328
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ D +++ HRIGRTGRAGN GVA T +T ++
Sbjct: 329 NFDVPSDSESYVHRIGRTGRAGNTGVALTFITPRE 363
>gi|420418192|ref|ZP_14917284.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4076]
gi|393033018|gb|EJB34081.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4076]
Length = 492
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|189913376|ref|YP_001964605.1| DEAD/DEAH box helicase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|167781444|gb|ABZ99741.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 534
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
Y ++ + ++E A +VR L+ N A++ + A++L ++L+ K Y V LHGD+
Sbjct: 231 YYIIDEAEREIA--VVRILDYENPF--KAIIFTKTKKEADDLKSTLSFKGYPVEALHGDL 286
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
+Q +R V+ +ILVATDVAARGLD+ + V+NY L D +++THRIGRTGRA
Sbjct: 287 NQKQREQVLKSLHDGRVKILVATDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRA 346
Query: 129 GNKGVAYTLVTDKDKDGELR 148
G G A TLVT ++ LR
Sbjct: 347 GKSGKAVTLVTTRESRALLR 366
>gi|449129185|ref|ZP_21765416.1| hypothetical protein HMPREF9724_00081 [Treponema denticola SP37]
gi|448946027|gb|EMB26892.1| hypothetical protein HMPREF9724_00081 [Treponema denticola SP37]
Length = 570
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 70/101 (69%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ +++A+++A L + Y+ LHGD+ QS+R ++ +F+ ++ RILVATDVAARG
Sbjct: 246 LVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRILVATDVAARG 305
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+DI I VVNY + D T+THRIGRTGRAG GVA + V
Sbjct: 306 IDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFV 346
>gi|161501867|ref|NP_762119.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6]
gi|319999566|gb|AAO07109.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6]
Length = 459
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ + + L + + V+ LHGDM+Q ER +T F + ILVATDVAARGLD+ ++ V+
Sbjct: 256 QNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVATDVAARGLDVDNLDAVI 315
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG KG+A + ++K+
Sbjct: 316 NFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKE 350
>gi|50305865|ref|XP_452893.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660558|sp|Q6CT46.1|DBP3_KLULA RecName: Full=ATP-dependent RNA helicase DBP3
gi|49642026|emb|CAH01744.1| KLLA0C15499p [Kluyveromyces lactis]
Length = 504
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 66/97 (68%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A + +L YDV +HGD+ Q +R + +FK +C +L+ATDVAARGLDIP+++TV
Sbjct: 353 ASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTV 412
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+N ++ + HRIGRTGRAG G A+TL T+++K
Sbjct: 413 INLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEK 449
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEE 49
RAG G A+TL T+++K AG LV L GA Q VP L +E
Sbjct: 433 RAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFGTHTKKKE 481
>gi|94500946|ref|ZP_01307471.1| putative ATP-dependent RNA helicase DbpA [Bermanella marisrubri]
gi|94426886|gb|EAT11869.1| putative ATP-dependent RNA helicase DbpA [Oceanobacter sp. RED65]
Length = 466
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 65/96 (67%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+E+A+ L + + + LHGD++Q +R+ + +F + I+VATDVAARGLDI + V
Sbjct: 260 AQEIADELRSQGFSAVALHGDLEQRQRDQTLVRFANKSASIMVATDVAARGLDIESVDAV 319
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NY LARD + H HR+GRTGR KG A++ TDK+
Sbjct: 320 FNYHLARDPEVHVHRVGRTGRGDKKGKAFSFYTDKE 355
>gi|449127864|ref|ZP_21764134.1| hypothetical protein HMPREF9733_01537 [Treponema denticola SP33]
gi|448943196|gb|EMB24088.1| hypothetical protein HMPREF9733_01537 [Treponema denticola SP33]
Length = 570
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 70/101 (69%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ +++A+++A L + Y+ LHGD+ QS+R ++ +F+ ++ RILVATDVAARG
Sbjct: 246 LVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRILVATDVAARG 305
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+DI I VVNY + D T+THRIGRTGRAG GVA + V
Sbjct: 306 IDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFV 346
>gi|386750678|ref|YP_006223898.1| ATP-dependent RNA helicase [Helicobacter pylori Shi417]
gi|384556936|gb|AFH97404.1| ATP-dependent RNA helicase [Helicobacter pylori Shi417]
Length = 492
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|385228012|ref|YP_005787945.1| ATP-dependent RNA helicase [Helicobacter pylori Puno120]
gi|344334450|gb|AEN14894.1| ATP-dependent RNA helicase [Helicobacter pylori Puno120]
Length = 492
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRTSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|189240548|ref|XP_973126.2| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
[Tribolium castaneum]
Length = 984
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 63/96 (65%)
Query: 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
Q NA+ L L Y+ L LHG +DQ +R+S I FK + ++L+AT VAARGLD+ H+
Sbjct: 582 QENADILLKELMKAAYNCLSLHGGIDQFDRDSTIIDFKSGKVKLLIATSVAARGLDVKHL 641
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
VVNYD + + HR GRTGRAGNKG AYT +T
Sbjct: 642 ILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFIT 677
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNL 41
RAGNKG AYT +T + +AG ++R E A+ +P L L
Sbjct: 665 RAGNKGFAYTFITPEQSRYAGDIIRAFELASVPIPDPLRAL 705
>gi|84996425|ref|XP_952934.1| DEAD-family helicase [Theileria annulata strain Ankara]
gi|65303931|emb|CAI76310.1| DEAD-family helicase, putative [Theileria annulata]
Length = 757
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 54/123 (43%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
HL LE PP ++ + ++ N + + +T Y + LHG Q R + KFK
Sbjct: 599 HLEETLETLE---PPIIIFVNLKKNTDVITKHITKIGYRAVSLHGGKTQESREDALNKFK 655
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141
ILVATDV RGLD+ I+ V+NYD+ +DI T+THRIGRTGRAG KG++ + VTD
Sbjct: 656 SGAYDILVATDVVGRGLDVEGIKVVINYDMPKDIQTYTHRIGRTGRAGLKGLSISFVTDA 715
Query: 142 DKD 144
D D
Sbjct: 716 DVD 718
>gi|420401386|ref|ZP_14900582.1| ATP-dependent RNA helicase [Helicobacter pylori CPY6081]
gi|393020008|gb|EJB21148.1| ATP-dependent RNA helicase [Helicobacter pylori CPY6081]
Length = 492
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|307946857|ref|ZP_07662192.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
gi|307770521|gb|EFO29747.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
Length = 471
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
Query: 15 KDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERN 74
KD E L LEGA +++ A++ + + L SL Y V LHGDMDQ R
Sbjct: 227 KDYEKRAVLRELLEGA-EDLNNAIVFCNRKRDISTLFRSLERHGYSVGSLHGDMDQRTRM 285
Query: 75 SVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVA 134
+++ FK+ ++L+A+DVAARGLDIP + V NYD+ + + HRIGRTGRAG GVA
Sbjct: 286 TMLDNFKKGTIKLLIASDVAARGLDIPEVSHVFNYDVPSHAEDYVHRIGRTGRAGRTGVA 345
Query: 135 YTLVTDKDK 143
YTLV+ D+
Sbjct: 346 YTLVSGSDQ 354
>gi|449105282|ref|ZP_21741987.1| hypothetical protein HMPREF9729_00252 [Treponema denticola ASLM]
gi|451969588|ref|ZP_21922817.1| hypothetical protein HMPREF9728_02019 [Treponema denticola US-Trep]
gi|448967269|gb|EMB47910.1| hypothetical protein HMPREF9729_00252 [Treponema denticola ASLM]
gi|451701685|gb|EMD56146.1| hypothetical protein HMPREF9728_02019 [Treponema denticola US-Trep]
Length = 570
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 70/101 (69%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ +++A+++A L + Y+ LHGD+ QS+R ++ +F+ ++ RILVATDVAARG
Sbjct: 246 LVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRILVATDVAARG 305
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+DI I VVNY + D T+THRIGRTGRAG GVA + V
Sbjct: 306 IDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFV 346
>gi|42527612|ref|NP_972710.1| DEAD/DEAH box helicase [Treponema denticola ATCC 35405]
gi|41818440|gb|AAS12629.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Treponema
denticola ATCC 35405]
Length = 570
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 70/101 (69%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ +++A+++A L + Y+ LHGD+ QS+R ++ +F+ ++ RILVATDVAARG
Sbjct: 246 LVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRILVATDVAARG 305
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+DI I VVNY + D T+THRIGRTGRAG GVA + V
Sbjct: 306 IDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFV 346
>gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
MLS10]
Length = 528
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 48/94 (51%), Positives = 69/94 (73%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
ELA +L + Y LHGD+ QS+R+SV+ KF+ L+ATDVAARG+D+ ++ VVN
Sbjct: 254 ELAEALQARGYRADGLHGDLTQSQRDSVMKKFRDSSIDFLIATDVAARGIDVQNVTHVVN 313
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
YD+ +D +++ HRIGRTGRAG +G+A TLVT ++
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGREGIALTLVTPRE 347
>gi|449104683|ref|ZP_21741421.1| hypothetical protein HMPREF9730_02318 [Treponema denticola AL-2]
gi|448962819|gb|EMB43505.1| hypothetical protein HMPREF9730_02318 [Treponema denticola AL-2]
Length = 570
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 70/101 (69%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ +++A+++A L + Y+ LHGD+ QS+R ++ +F+ ++ RILVATDVAARG
Sbjct: 246 LVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRILVATDVAARG 305
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+DI I VVNY + D T+THRIGRTGRAG GVA + V
Sbjct: 306 IDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFV 346
>gi|420403406|ref|ZP_14902592.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6261]
gi|393020572|gb|EJB21711.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6261]
Length = 492
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|343087345|ref|YP_004776640.1| DEAD/DEAH box helicase [Cyclobacterium marinum DSM 745]
gi|342355879|gb|AEL28409.1| DEAD/DEAH box helicase domain protein [Cyclobacterium marinum DSM
745]
Length = 565
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 65/101 (64%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+ LT K LHGD+ Q++R V+ KF++ C +LVATDVAARG+D+ ++ V
Sbjct: 258 DEVTEELTAKGIPAEALHGDLSQAQRTKVMNKFRKGHCSVLVATDVAARGIDVENVEAVF 317
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELR 148
NYDL D + + HRIGRTGRAG G A + V+ + G LR
Sbjct: 318 NYDLPLDEENYVHRIGRTGRAGRSGTAISFVSGRRDSGRLR 358
>gi|221487611|gb|EEE25843.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
Length = 685
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 66/90 (73%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++L L ++ L +HGD +Q ER+ ++ F++ +C IL+ATDVA+RGLDI ++ V+
Sbjct: 550 DQLCRELRYRQLRALAIHGDKEQRERDRILHDFRKGDCEILLATDVASRGLDIQDVKFVI 609
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTL 137
NYD+ ++I+++ HRIGRTGRAGNKG A +
Sbjct: 610 NYDVPKNIESYIHRIGRTGRAGNKGTAISF 639
>gi|237830475|ref|XP_002364535.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
gi|211962199|gb|EEA97394.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
gi|221507408|gb|EEE33012.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
Length = 685
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 66/90 (73%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++L L ++ L +HGD +Q ER+ ++ F++ +C IL+ATDVA+RGLDI ++ V+
Sbjct: 550 DQLCRELRYRQLRALAIHGDKEQRERDRILHDFRKGDCEILLATDVASRGLDIQDVKFVI 609
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTL 137
NYD+ ++I+++ HRIGRTGRAGNKG A +
Sbjct: 610 NYDVPKNIESYIHRIGRTGRAGNKGTAISF 639
>gi|416253243|ref|ZP_11638266.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis O35E]
gi|326578004|gb|EGE27868.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis O35E]
Length = 581
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%)
Query: 31 NQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVA 90
N ++ A++ A +++ E+LA L + LHGD+ Q +RN +++ K +C +LVA
Sbjct: 255 NPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVA 314
Query: 91 TDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
TDVAARG+DI I V+NYDL R ++ + HRIGR GRAG GVA L + D
Sbjct: 315 TDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIND 366
>gi|208434194|ref|YP_002265860.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
gi|208432123|gb|ACI26994.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
Length = 492
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|449111386|ref|ZP_21747983.1| hypothetical protein HMPREF9735_01032 [Treponema denticola ATCC
33521]
gi|449113799|ref|ZP_21750282.1| hypothetical protein HMPREF9721_00800 [Treponema denticola ATCC
35404]
gi|448957882|gb|EMB38621.1| hypothetical protein HMPREF9721_00800 [Treponema denticola ATCC
35404]
gi|448958413|gb|EMB39144.1| hypothetical protein HMPREF9735_01032 [Treponema denticola ATCC
33521]
Length = 570
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 70/101 (69%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ +++A+++A L + Y+ LHGD+ QS+R ++ +F+ ++ RILVATDVAARG
Sbjct: 246 LVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRILVATDVAARG 305
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+DI I VVNY + D T+THRIGRTGRAG GVA + V
Sbjct: 306 IDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFV 346
>gi|421714416|ref|ZP_16153737.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R036d]
gi|407218101|gb|EKE87930.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R036d]
Length = 492
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|386753803|ref|YP_006227021.1| ATP-dependent RNA helicase [Helicobacter pylori Shi112]
gi|384560061|gb|AFI00528.1| ATP-dependent RNA helicase [Helicobacter pylori Shi112]
Length = 492
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|385217014|ref|YP_005778490.1| ATP-dependent RNA helicase [Helicobacter pylori F16]
gi|317177063|dbj|BAJ54852.1| ATP-dependent RNA helicase [Helicobacter pylori F16]
Length = 492
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|407717394|ref|YP_006838674.1| RNA helicase DbpA [Cycloclasticus sp. P1]
gi|407257730|gb|AFT68171.1| RNA helicase DbpA [Cycloclasticus sp. P1]
Length = 460
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 64/98 (65%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
E+A L + L +HGD+DQ ER+ V+ +F C +LVATDVAARGLDI I
Sbjct: 254 QCSEMAEFLREHNIESLAIHGDLDQRERDQVLVRFANNSCSVLVATDVAARGLDIKSIGM 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
V+NY+L RD + + HRIGRTGRAG G+A +L + ++
Sbjct: 314 VINYELPRDPEIYVHRIGRTGRAGETGLAMSLFAEHEQ 351
>gi|358449230|ref|ZP_09159720.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
gi|357226647|gb|EHJ05122.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
Length = 457
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 49/92 (53%), Positives = 65/92 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+++A L + + L LHGD++Q +R+SV+ +F Q C ILVATDVAARGLDI + V+
Sbjct: 254 DDMAAELGERGFSALPLHGDLEQRDRDSVLVRFGNQSCSILVATDVAARGLDIKSLPLVI 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
N + ARD + HTHRIGRTGRAG +G A T T
Sbjct: 314 NAEPARDPEVHTHRIGRTGRAGERGHAVTFCT 345
>gi|385220091|ref|YP_005781563.1| ATP-dependent RNA helicase [Helicobacter pylori India7]
gi|317008898|gb|ADU79478.1| ATP-dependent RNA helicase [Helicobacter pylori India7]
Length = 492
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|270011364|gb|EFA07812.1| hypothetical protein TcasGA2_TC005373 [Tribolium castaneum]
Length = 1007
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 63/96 (65%)
Query: 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
Q NA+ L L Y+ L LHG +DQ +R+S I FK + ++L+AT VAARGLD+ H+
Sbjct: 605 QENADILLKELMKAAYNCLSLHGGIDQFDRDSTIIDFKSGKVKLLIATSVAARGLDVKHL 664
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
VVNYD + + HR GRTGRAGNKG AYT +T
Sbjct: 665 ILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFIT 700
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNL 41
RAGNKG AYT +T + +AG ++R E A+ +P L L
Sbjct: 688 RAGNKGFAYTFITPEQSRYAGDIIRAFELASVPIPDPLRAL 728
>gi|210134447|ref|YP_002300886.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
gi|210132415|gb|ACJ07406.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
Length = 492
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|84385240|ref|ZP_00988272.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus 12B01]
gi|84379837|gb|EAP96688.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus 12B01]
Length = 459
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 67/91 (73%)
Query: 52 NSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDL 111
+ L+ + + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V N++L
Sbjct: 261 DELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVATDVAARGLDVDNLDAVFNFEL 320
Query: 112 ARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+RD + H HRIGRTGRAG+KGVA + ++K+
Sbjct: 321 SRDPEVHVHRIGRTGRAGSKGVAISFFSEKE 351
>gi|420419835|ref|ZP_14918923.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4161]
gi|393039201|gb|EJB40233.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4161]
Length = 491
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|387907613|ref|YP_006337947.1| ATP-dependent RNA helicase [Helicobacter pylori XZ274]
gi|387572548|gb|AFJ81256.1| ATP-dependent RNA helicase [Helicobacter pylori XZ274]
Length = 492
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|385229561|ref|YP_005789477.1| ATP-dependent RNA helicase [Helicobacter pylori Puno135]
gi|344335999|gb|AEN17960.1| ATP-dependent RNA helicase [Helicobacter pylori Puno135]
Length = 492
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|218676922|ref|YP_002395741.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus LGP32]
gi|218325190|emb|CAV27104.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 468
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 67/91 (73%)
Query: 52 NSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDL 111
+ L+ + + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V N++L
Sbjct: 270 DELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVATDVAARGLDVDNLDAVFNFEL 329
Query: 112 ARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+RD + H HRIGRTGRAG+KGVA + ++K+
Sbjct: 330 SRDPEVHVHRIGRTGRAGSKGVAISFFSEKE 360
>gi|449124175|ref|ZP_21760494.1| hypothetical protein HMPREF9723_00538 [Treponema denticola OTK]
gi|448942506|gb|EMB23400.1| hypothetical protein HMPREF9723_00538 [Treponema denticola OTK]
Length = 570
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 70/101 (69%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ +++A+++A L + Y+ LHGD+ QS+R ++ +F+ ++ RILVATDVAARG
Sbjct: 246 LVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRILVATDVAARG 305
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+DI I VVNY + D T+THRIGRTGRAG GVA + V
Sbjct: 306 IDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFV 346
>gi|308182422|ref|YP_003926549.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4]
gi|308064607|gb|ADO06499.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4]
Length = 492
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|449108862|ref|ZP_21745503.1| hypothetical protein HMPREF9722_01199 [Treponema denticola ATCC
33520]
gi|449119551|ref|ZP_21755947.1| hypothetical protein HMPREF9725_01412 [Treponema denticola H1-T]
gi|449121942|ref|ZP_21758288.1| hypothetical protein HMPREF9727_01048 [Treponema denticola MYR-T]
gi|448949383|gb|EMB30208.1| hypothetical protein HMPREF9727_01048 [Treponema denticola MYR-T]
gi|448950541|gb|EMB31363.1| hypothetical protein HMPREF9725_01412 [Treponema denticola H1-T]
gi|448961137|gb|EMB41845.1| hypothetical protein HMPREF9722_01199 [Treponema denticola ATCC
33520]
Length = 570
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 70/101 (69%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ +++A+++A L + Y+ LHGD+ QS+R ++ +F+ ++ RILVATDVAARG
Sbjct: 246 LVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRILVATDVAARG 305
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+DI I VVNY + D T+THRIGRTGRAG GVA + V
Sbjct: 306 IDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFV 346
>gi|407718741|ref|YP_006796146.1| ATP-dependent RNA helicase [Leuconostoc carnosum JB16]
gi|407242497|gb|AFT82147.1| ATP-dependent RNA helicase [Leuconostoc carnosum JB16]
Length = 532
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 66/97 (68%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
EELA L + Y LHGD+ Q R+ V+++FK E ILVATDVAARGLD+ + V
Sbjct: 253 EELARGLEARGYHAAGLHGDLTQQMRSRVLSQFKSHEINILVATDVAARGLDVKDVSHVY 312
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++ HRIGRTGRAG KGV+ T V+ + D
Sbjct: 313 NFDIPQDPESYVHRIGRTGRAGAKGVSVTFVSPNEMD 349
>gi|420416460|ref|ZP_14915569.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4044]
gi|393036889|gb|EJB37927.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4044]
Length = 491
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|422341598|ref|ZP_16422539.1| DEAD/DEAH box family ATP-dependent RNA helicase [Treponema
denticola F0402]
gi|325474437|gb|EGC77624.1| DEAD/DEAH box family ATP-dependent RNA helicase [Treponema
denticola F0402]
Length = 570
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 70/101 (69%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ +++A+++A L + Y+ LHGD+ QS+R ++ +F+ ++ RILVATDVAARG
Sbjct: 246 LVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRILVATDVAARG 305
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+DI I VVNY + D T+THRIGRTGRAG GVA + V
Sbjct: 306 IDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFV 346
>gi|384899413|ref|YP_005774793.1| ATP-dependent RNA helicase [Helicobacter pylori F30]
gi|317179357|dbj|BAJ57145.1| ATP-dependent RNA helicase [Helicobacter pylori F30]
Length = 492
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|308502287|ref|XP_003113328.1| hypothetical protein CRE_25199 [Caenorhabditis remanei]
gi|308265629|gb|EFP09582.1| hypothetical protein CRE_25199 [Caenorhabditis remanei]
Length = 698
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 71/107 (66%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + A +LA L+ + Y V+ +HGD+ Q ER + F+ ILVAT VAARG
Sbjct: 492 LVFVETKRGASDLAYYLSRQNYQVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARG 551
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP+++ V+NYDL D+D + HRIGRTGR GN G+A + DK+++
Sbjct: 552 LDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRN 598
>gi|387781935|ref|YP_005792648.1| ATP-dependent RNA helicase [Helicobacter pylori 51]
gi|261837694|gb|ACX97460.1| ATP-dependent RNA helicase [Helicobacter pylori 51]
Length = 492
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|34557821|ref|NP_907636.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Wolinella
succinogenes DSM 1740]
gi|34483539|emb|CAE10536.1| ATP-DEPENDENT RNA HELICASE, DEAD-BOX FAMILY DEAD [Wolinella
succinogenes]
Length = 505
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 66/97 (68%)
Query: 43 MQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPH 102
M+ A++L+N L K Y LHGDM+Q ER + + FK+ ILVATDVAARGLDI +
Sbjct: 260 MKKEADDLSNRLIAKGYQAGALHGDMEQRERQAAVNAFKQGAIDILVATDVAARGLDISN 319
Query: 103 IRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
+ V NY + + +++ HRIGRTGRAG KG+A TL T
Sbjct: 320 VSHVFNYHIPLNPESYVHRIGRTGRAGKKGIAITLAT 356
>gi|406989712|gb|EKE09457.1| hypothetical protein ACD_16C00166G0004 [uncultured bacterium]
Length = 407
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 67/93 (72%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+ LA L ++ V +HG++ Q +R++VI F++ + RI+VATDVAARGLDIPHI V
Sbjct: 250 ADRLAKKLNQQKLSVSAIHGNLKQRKRDAVINDFRKLKTRIMVATDVAARGLDIPHIMHV 309
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
+NYDL + + + HRIGRTGRAG +G A + ++
Sbjct: 310 INYDLPQSPEDYIHRIGRTGRAGMEGFALSFIS 342
>gi|408420090|ref|YP_006761504.1| ATP-independent RNA helicase DbpA [Desulfobacula toluolica Tol2]
gi|405107303|emb|CCK80800.1| DbpA: ATP-independent RNA helicase [Desulfobacula toluolica Tol2]
Length = 458
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 71/107 (66%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ +L + L+ L K + L +HGD++Q +R ++ +F ILVATDVAAR
Sbjct: 243 ALIFCNTKLQCKSLSKFLEAKGFSSLAIHGDLEQKDRTQILVRFSNGSTPILVATDVAAR 302
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
GLDI + V+N+DL + + + HRIGRTGRAG +G+A++L+T K++
Sbjct: 303 GLDISGLSAVINFDLPFEPEVYIHRIGRTGRAGKEGMAFSLMTPKEQ 349
>gi|340992734|gb|EGS23289.1| hypothetical protein CTHT_0009560 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1198
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 70/108 (64%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ + Q A++L L + Y + +HG DQ +RNS I+ FK+ C IL+AT VAAR
Sbjct: 830 ALIFVERQEKADDLLRELLRRGYGCMSIHGGKDQEDRNSTISDFKKGVCPILIATSVAAR 889
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
GLD+ ++ VVNYD ++ + HR GRTGRAGN G A T +T++ ++
Sbjct: 890 GLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEN 937
>gi|449116380|ref|ZP_21752831.1| hypothetical protein HMPREF9726_00816 [Treponema denticola H-22]
gi|448954267|gb|EMB35050.1| hypothetical protein HMPREF9726_00816 [Treponema denticola H-22]
Length = 570
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 70/101 (69%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ +++A+++A L + Y+ LHGD+ QS+R ++ +F+ ++ RILVATDVAARG
Sbjct: 246 LVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRILVATDVAARG 305
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+DI I VVNY + D T+THRIGRTGRAG GVA + V
Sbjct: 306 IDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFV 346
>gi|444375384|ref|ZP_21174677.1| ATP-dependent RNA helicase [Helicobacter pylori A45]
gi|443620082|gb|ELT80535.1| ATP-dependent RNA helicase [Helicobacter pylori A45]
Length = 492
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|407068791|ref|ZP_11099629.1| ATP-dependent RNA helicase DbpA [Vibrio cyclitrophicus ZF14]
Length = 459
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 67/91 (73%)
Query: 52 NSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDL 111
+ L+ + + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V N++L
Sbjct: 261 DELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVATDVAARGLDVDNLDAVFNFEL 320
Query: 112 ARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+RD + H HRIGRTGRAG+KGVA + ++K+
Sbjct: 321 SRDPEVHVHRIGRTGRAGSKGVAISFFSEKE 351
>gi|420394987|ref|ZP_14894218.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY1124]
gi|393015751|gb|EJB16916.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY1124]
Length = 492
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|384892304|ref|YP_005766397.1| ATP-dependent RNA helicase [Helicobacter pylori Cuz20]
gi|308061601|gb|ADO03489.1| ATP-dependent RNA helicase [Helicobacter pylori Cuz20]
Length = 492
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|17064740|gb|AAL32524.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
gi|21387105|gb|AAM47956.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
Length = 421
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 60/96 (62%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+ L N L + E+ +HGD Q ER + FK ILVATDVAARGLDIPH+ V
Sbjct: 230 ADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHV 289
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VN+DL DID + HRIGRTGRAG G+A + +
Sbjct: 290 VNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENN 325
>gi|398832639|ref|ZP_10590796.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
gi|398222976|gb|EJN09332.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
Length = 502
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 68/102 (66%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ +A+ L + + LHGDM Q RN + +R + R+LVATDVAAR
Sbjct: 274 AVVFTATKRDADTIADRLNIGGFAAAALHGDMHQGARNRTLNSLRRGQVRVLVATDVAAR 333
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
G+D+P I V NYDL + + + HRIGRTGRAG KGVA +LV
Sbjct: 334 GIDVPGITHVFNYDLPKFAEDYVHRIGRTGRAGRKGVAISLV 375
>gi|420413206|ref|ZP_14912330.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4099]
gi|393029193|gb|EJB30274.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4099]
Length = 492
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|383750102|ref|YP_005425205.1| ATP-dependent RNA helicase [Helicobacter pylori ELS37]
gi|380874848|gb|AFF20629.1| ATP-dependent RNA helicase [Helicobacter pylori ELS37]
Length = 492
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|407789878|ref|ZP_11136976.1| ATP-dependent RNA helicase DbpA [Gallaecimonas xiamenensis 3-C-1]
gi|407205700|gb|EKE75668.1| ATP-dependent RNA helicase DbpA [Gallaecimonas xiamenensis 3-C-1]
Length = 459
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 68/96 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++LA +L+ K + L LHGD++Q +R+ + +F + +LVATDVAARGLD+ + V+
Sbjct: 257 QDLAQALSAKGFSALALHGDLEQKDRDQAMVRFANKSATVLVATDVAARGLDVDALDLVI 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
NY LA + + H HR+GRTGRAGN+G+A TL + K+
Sbjct: 317 NYHLAFEPEVHVHRVGRTGRAGNQGMACTLFSAKES 352
>gi|420486880|ref|ZP_14985488.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-8]
gi|420520767|ref|ZP_15019198.1| DEAD-box ATP-dependent RNA helicase CshA [Helicobacter pylori Hp
P-8b]
gi|393104433|gb|EJC04990.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-8]
gi|393127354|gb|EJC27799.1| DEAD-box ATP-dependent RNA helicase CshA [Helicobacter pylori Hp
P-8b]
Length = 492
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420399731|ref|ZP_14898935.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY3281]
gi|393019272|gb|EJB20415.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY3281]
Length = 492
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|417948570|ref|ZP_12591714.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus ATCC 33789]
gi|342809517|gb|EGU44634.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus ATCC 33789]
Length = 459
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 68/95 (71%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ + + L+ + + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVTDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG KGVA + ++K+
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGGKGVAISFFSEKE 351
>gi|145351012|ref|XP_001419882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580115|gb|ABO98175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 440
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 4/136 (2%)
Query: 14 DKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSER 73
DKD+ A +++ G +EVP L+ + L L+ +E+ + +HGDM Q +R
Sbjct: 258 DKDRHLA-RVMKQYLGKGKEVPRTLIFGLYKKECANLHQRLS-REWPAVCIHGDMSQHDR 315
Query: 74 NSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGV 133
+ FK+ RIL+ATDVAARGLDI + V+NY + + HRIGRTGRAG G+
Sbjct: 316 EKSVDAFKKGTSRILIATDVAARGLDIKEVEYVINYTFPLTTEDYVHRIGRTGRAGATGL 375
Query: 134 AYTLVT--DKDKDGEL 147
A+T T DK + GEL
Sbjct: 376 AHTFFTLHDKARAGEL 391
>gi|386752257|ref|YP_006225476.1| ATP-dependent RNA helicase [Helicobacter pylori Shi169]
gi|384558515|gb|AFH98982.1| ATP-dependent RNA helicase [Helicobacter pylori Shi169]
Length = 492
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|324505559|gb|ADY42388.1| ATP-dependent RNA helicase DDX3X [Ascaris suum]
Length = 788
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 49/98 (50%), Positives = 66/98 (67%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A +LA L Y+V+ +HGD+ Q ER + F+ ILVAT VAARGLDIP+++ V
Sbjct: 565 ASDLAYYLQKDGYNVVAIHGDLKQFEREKHLETFRSGVAPILVATAVAARGLDIPNVKHV 624
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYDL DID + HRIGRTGR GN G+A + DK+++
Sbjct: 625 INYDLPSDIDEYVHRIGRTGRVGNVGLATSFFNDKNRN 662
>gi|86145730|ref|ZP_01064059.1| ATP-dependent RNA helicase DbpA [Vibrio sp. MED222]
gi|85836429|gb|EAQ54558.1| ATP-dependent RNA helicase DbpA [Vibrio sp. MED222]
Length = 459
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 67/91 (73%)
Query: 52 NSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDL 111
+ L+ + + V+ LHGDM+Q ER+ + +F + ILVATDVAARGLD+ ++ V N++L
Sbjct: 261 DELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVATDVAARGLDVDNLDAVFNFEL 320
Query: 112 ARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+RD + H HRIGRTGRAG+KGVA + ++K+
Sbjct: 321 SRDPEVHVHRIGRTGRAGSKGVAISFFSEKE 351
>gi|420405153|ref|ZP_14904333.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6271]
gi|393025023|gb|EJB26133.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6271]
Length = 492
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|296184919|ref|ZP_06853330.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
gi|296050701|gb|EFG90124.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
Length = 374
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 74/110 (67%)
Query: 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92
E A++ + +EL S+ + Y+V +HGDM Q++R + + KFK LVATD
Sbjct: 241 EPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFLVATD 300
Query: 93 VAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VAARG+D+ + V+NYDL +D++++ HRIGRTGRA +G+AY+LVT ++
Sbjct: 301 VAARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSLVTPRE 350
>gi|223993165|ref|XP_002286266.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977581|gb|EED95907.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 480
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 53/100 (53%), Positives = 67/100 (67%), Gaps = 3/100 (3%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A ELAN L + + V LHGD +Q ER VI FK+ R+L+ATDVAARGLD+ + V
Sbjct: 308 AHELANQLWDEGFAVDSLHGDREQWERTKVINAFKQGTLRLLIATDVAARGLDVKDVGVV 367
Query: 107 VNYDLARDI---DTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
VNYD+ + + + HRIGRTGRAG KG+AYT+ T DK
Sbjct: 368 VNYDMPVGVNGAEDYIHRIGRTGRAGAKGIAYTMFTPGDK 407
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG KG+AYT+ T DK+ A LV LE A QEVP L +A
Sbjct: 391 RAGAKGIAYTMFTPGDKKLATQLVEILEKAEQEVPAELKAMA 432
>gi|108562675|ref|YP_626991.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1]
gi|217031464|ref|ZP_03436969.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128]
gi|298736807|ref|YP_003729337.1| putative helicase [Helicobacter pylori B8]
gi|107836448|gb|ABF84317.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1]
gi|216946664|gb|EEC25260.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128]
gi|298356001|emb|CBI66873.1| putative helicase [Helicobacter pylori B8]
Length = 492
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|3775999|emb|CAA09202.1| RNA helicase [Arabidopsis thaliana]
Length = 224
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 60/96 (62%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+ L N L + E+ +HGD Q ER + FK ILVATDVAARGLDIPH+ V
Sbjct: 33 ADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHV 92
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VN+DL DID + HRIGRTGRAG G+A + +
Sbjct: 93 VNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENN 128
>gi|402586358|gb|EJW80296.1| ATP-dependent RNA helicase DBP2 [Wuchereria bancrofti]
Length = 626
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 67/105 (63%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + M+ A+ L + K Y L LHGD Q+ERN V+ FK EC +L+ATDVAARG
Sbjct: 479 LIFVGMKRTADWLTRLIRKKGYPALSLHGDKSQTERNFVMNDFKNGECSVLIATDVAARG 538
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
LD+ I+ V+N+D ++I+ + HRIGRT R G +YTL T D
Sbjct: 539 LDVNDIKYVINFDCPKNIENYIHRIGRTARHDKTGTSYTLCTRND 583
>gi|338733518|ref|YP_004671991.1| ATP-dependent RNA helicase DBP2 [Simkania negevensis Z]
gi|336482901|emb|CCB89500.1| ATP-dependent RNA helicase DBP2 [Simkania negevensis Z]
Length = 432
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 71/97 (73%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+A++LA L K++ V LHGDM+Q++R+ + + ++ + RILVATDVAARG+D+ I
Sbjct: 267 HADQLARDLRDKQHPVAALHGDMNQNKRSRTLNQLRKGKIRILVATDVAARGIDVQSITH 326
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+NYDL +++ + HRIGRTGRAG G A + V+D+D
Sbjct: 327 VINYDLPTNVEDYVHRIGRTGRAGATGQALSFVSDRD 363
>gi|213409157|ref|XP_002175349.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
[Schizosaccharomyces japonicus yFS275]
gi|212003396|gb|EEB09056.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
[Schizosaccharomyces japonicus yFS275]
Length = 672
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 71/112 (63%)
Query: 31 NQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVA 90
N+ PP ++ + ++ N E LA +L + V+ LHG Q +R I + + ILVA
Sbjct: 524 NRYAPPIVVFVNLKRNCESLAKALYNMGWRVVTLHGSKSQEQRERAIEQLRNHSADILVA 583
Query: 91 TDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
TD+A RG+DIP++ VVNY++A+ I+ +THRIGRTGRAG G A T + +D
Sbjct: 584 TDLAGRGIDIPNVSLVVNYNMAKSIEDYTHRIGRTGRAGKHGTAITFLGPED 635
>gi|170594503|ref|XP_001902003.1| ATP-dependent RNA helicase P62 [Brugia malayi]
gi|158590947|gb|EDP29562.1| ATP-dependent RNA helicase P62, putative [Brugia malayi]
Length = 587
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 51/105 (48%), Positives = 67/105 (63%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + M+ A+ L + K Y L LHGD Q+ERN V+ FK EC ILVATDVAARG
Sbjct: 435 LIFVGMKRTADWLTRLIRKKGYPALSLHGDKSQTERNFVMNDFKNGECSILVATDVAARG 494
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
LD+ I+ V+N+D ++I+ + HRIGRT R G +YTL T D
Sbjct: 495 LDVNDIKYVINFDCPKNIEDYIHRIGRTARHDKTGTSYTLCTRSD 539
>gi|420409625|ref|ZP_14908771.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori NQ4200]
gi|393029739|gb|EJB30819.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori NQ4200]
Length = 484
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|224007100|ref|XP_002292510.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972152|gb|EED90485.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 365
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 67/106 (63%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + N + + + L + + +HGD Q ER + FK C +LVATDVAARG
Sbjct: 231 LIFVETKRNCDFVEDILCERGFPACSIHGDKSQREREDSLRAFKTGRCPVLVATDVAARG 290
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
LDIP++ VVNYDL +ID + HRIGRTGRAGN G A + V +K+
Sbjct: 291 LDIPNVTQVVNYDLPTNIDDYVHRIGRTGRAGNTGAALSFVNEKNS 336
>gi|416243311|ref|ZP_11633832.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis BC7]
gi|326569194|gb|EGE19255.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis BC7]
Length = 581
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 70/109 (64%)
Query: 31 NQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVA 90
N ++ A++ A +++ E+LA L + LHGD+ Q +RN +++ K +C +LVA
Sbjct: 255 NPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVA 314
Query: 91 TDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
TDVAARG+DI I V+NYDL R ++ + HRIGR GRAG GVA L +
Sbjct: 315 TDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCS 363
>gi|307545782|ref|YP_003898261.1| ATP-dependent RNA helicase DeaD [Halomonas elongata DSM 2581]
gi|307217806|emb|CBV43076.1| K05592 ATP-dependent RNA helicase DeaD [Halomonas elongata DSM
2581]
Length = 555
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 64/93 (68%)
Query: 50 LANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109
L L+ + +V L GD+DQS R IT+ KR + +L+ATDVAARGLD+P I V+NY
Sbjct: 264 LMEQLSARGLNVASLSGDLDQSLRERTITRLKRGKIDVLIATDVAARGLDVPRITHVINY 323
Query: 110 DLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
DL +D + +THRIGRTGRAG GVA T +++
Sbjct: 324 DLPQDAEAYTHRIGRTGRAGRAGVAITFAGNRE 356
>gi|392396642|ref|YP_006433243.1| DNA/RNA helicase [Flexibacter litoralis DSM 6794]
gi|390527720|gb|AFM03450.1| DNA/RNA helicase, superfamily II [Flexibacter litoralis DSM 6794]
Length = 617
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 67/94 (71%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A +L K Y LHGD+ Q +RN V+ KF+ +ILVATDVAARG+D+ ++ V+
Sbjct: 284 DEVAETLIQKGYAAEALHGDLAQHQRNLVMNKFRHGRVQILVATDVAARGIDVDNVEAVI 343
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141
NYD+ D + + HRIGRTGRAGNKGV+ T ++ +
Sbjct: 344 NYDVPLDPEYYVHRIGRTGRAGNKGVSITFISGR 377
>gi|378973279|ref|YP_005221885.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|378974346|ref|YP_005222954.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pertenue str. Gauthier]
gi|378982255|ref|YP_005230562.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pertenue str. CDC2]
gi|374677604|gb|AEZ57897.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|374678674|gb|AEZ58966.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pertenue str. CDC2]
gi|374679743|gb|AEZ60034.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pertenue str. Gauthier]
Length = 649
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 48/93 (51%), Positives = 67/93 (72%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+A+ +A SL + Y V LHGD+ QS+R ++ +F+ + RILVATDVAARG+DI I
Sbjct: 297 DADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGIDIEGITH 356
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
VVNY + D T+THR+GRTGRAG++G+A + V
Sbjct: 357 VVNYSIPHDSATYTHRVGRTGRAGSQGIAISFV 389
>gi|163782068|ref|ZP_02177067.1| ATP-dependent RNA helicase DeaD [Hydrogenivirga sp. 128-5-R1-1]
gi|159882600|gb|EDP76105.1| ATP-dependent RNA helicase DeaD [Hydrogenivirga sp. 128-5-R1-1]
Length = 361
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 72/106 (67%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
++ + M+ NA+ELA +L K Y+V LHGDM Q R +V+ F+ ++L+ATDVA+RG
Sbjct: 242 IVFVKMKRNAKELAYTLRKKGYNVEALHGDMTQKRRETVMKLFRNNRVKVLIATDVASRG 301
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
LDI + ++N+ L D +THRIGRTGR G++G A +LV+ +K
Sbjct: 302 LDIEGVSMIINFHLPEDPRVYTHRIGRTGRFGSEGTAISLVSPSEK 347
>gi|66807079|ref|XP_637262.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
gi|74996736|sp|Q54KG1.1|DDX41_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx41; AltName:
Full=DEAD box protein 41
gi|60465669|gb|EAL63748.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
Length = 671
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 56/145 (38%), Positives = 86/145 (59%), Gaps = 4/145 (2%)
Query: 3 GNKGVAYTLVTDKDKEFA---GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEY 59
G G A VT ++ EF +V LE + PP L+ + + +++ L +K+
Sbjct: 441 GRAGAANLNVT-QEVEFVKPEAKIVYLLECLQKTPPPVLIFCENKKDVDDIYEYLLLKQV 499
Query: 60 DVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHT 119
+ + +HGD Q ER S I F+ + +LVATDVA++GLD P I+ V+N+D+ R+I+ +
Sbjct: 500 EAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYI 559
Query: 120 HRIGRTGRAGNKGVAYTLVTDKDKD 144
HRIGRTGR GNKGVA T + + +
Sbjct: 560 HRIGRTGRRGNKGVATTFINKNNTE 584
>gi|352103380|ref|ZP_08959834.1| ATP-dependent RNA helicase DbpA [Halomonas sp. HAL1]
gi|350599395|gb|EHA15483.1| ATP-dependent RNA helicase DbpA [Halomonas sp. HAL1]
Length = 477
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 65/95 (68%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A LT + + L+GD++Q +R+ ++ F Q ILVATDVAARGLDI + V
Sbjct: 274 QAVAEQLTDVGFSAVALNGDLEQKDRDRILILFANQSASILVATDVAARGLDIAQLDAVF 333
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NY +AR++D H HR+GRTGRAG G+A TLVT K+
Sbjct: 334 NYQIARELDVHVHRVGRTGRAGASGIACTLVTPKE 368
>gi|330929272|ref|XP_003302577.1| hypothetical protein PTT_14452 [Pyrenophora teres f. teres 0-1]
gi|311321983|gb|EFQ89342.1| hypothetical protein PTT_14452 [Pyrenophora teres f. teres 0-1]
Length = 599
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 48/88 (54%), Positives = 60/88 (68%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+ L++ L + + +HGD Q ER + F+ C ILVAT VAARGLDIPH++ V
Sbjct: 469 ADSLSDFLINQGFPATSIHGDRTQREREKALEMFRNGRCPILVATAVAARGLDIPHVKHV 528
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVA 134
VNYDL DID + HRIGRTGRAGN G+A
Sbjct: 529 VNYDLPTDIDDYVHRIGRTGRAGNTGIA 556
>gi|421779191|ref|ZP_16215685.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis RH4]
gi|407813632|gb|EKF84412.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis RH4]
Length = 581
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 70/109 (64%)
Query: 31 NQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVA 90
N ++ A++ A +++ E+LA L + LHGD+ Q +RN +++ K +C +LVA
Sbjct: 255 NPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVA 314
Query: 91 TDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
TDVAARG+DI I V+NYDL R ++ + HRIGR GRAG GVA L +
Sbjct: 315 TDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCS 363
>gi|444920089|ref|ZP_21239933.1| ATP-independent RNA helicase dbpA [Wohlfahrtiimonas chitiniclastica
SH04]
gi|444508956|gb|ELV09124.1| ATP-independent RNA helicase dbpA [Wohlfahrtiimonas chitiniclastica
SH04]
Length = 461
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 65/93 (69%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
+EL + L ++ DV+ LHGD++Q ER+ V+ +F R+LVATDVAARGLDI + V
Sbjct: 255 CQELEDYLFEQDIDVVSLHGDLEQRERDQVLLRFSNGSTRVLVATDVAARGLDIADLSMV 314
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
+NYDL D + + HRIGRTGRAG G+A +LV
Sbjct: 315 INYDLPFDPEVYVHRIGRTGRAGKTGIAVSLVV 347
>gi|410642694|ref|ZP_11353203.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola chathamensis
S18K6]
gi|410137577|dbj|GAC11390.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola chathamensis
S18K6]
Length = 459
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 69/102 (67%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ ++ +E+A+SL VL LHGD++Q ERN V+ +F + +LVATDVA+R
Sbjct: 244 AIVFCNTKIACQEVADSLQSLGVSVLALHGDLEQRERNQVLVRFANKSVSVLVATDVASR 303
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
GLDI + V++Y + D + H HRIGRTGRA +KGVA TLV
Sbjct: 304 GLDIKEVNAVISYHITPDPEVHIHRIGRTGRAESKGVALTLV 345
>gi|324502652|gb|ADY41165.1| ATP-dependent RNA helicase an3 [Ascaris suum]
Length = 656
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/98 (48%), Positives = 66/98 (67%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A +LA L Y+V+ +HGD+ Q ER + F+ E +LVAT VAARGLDIP+++ V
Sbjct: 380 ANDLAWFLQRNNYNVVPIHGDLKQFERERHLEMFRTGEANVLVATAVAARGLDIPNVKHV 439
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+N+DL DID + HRIGRTGR GN G A + DK+++
Sbjct: 440 INFDLPSDIDEYVHRIGRTGRVGNVGQATSFFNDKNRN 477
>gi|424668388|ref|ZP_18105413.1| hypothetical protein A1OC_01984 [Stenotrophomonas maltophilia
Ab55555]
gi|401068650|gb|EJP77174.1| hypothetical protein A1OC_01984 [Stenotrophomonas maltophilia
Ab55555]
Length = 458
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 68/98 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +E+ANSL + L LHGDM+Q +R V+ + C +LVA+DVAARGLD+ +
Sbjct: 253 DVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCNVLVASDVAARGLDVEDLAA 312
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
V+NY+L D++++ HR+GRTGRAG G+A +LV ++K
Sbjct: 313 VINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREK 350
>gi|416156217|ref|ZP_11604349.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 101P30B1]
gi|416216424|ref|ZP_11623748.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 7169]
gi|416220842|ref|ZP_11625651.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 103P14B1]
gi|416228903|ref|ZP_11627835.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 46P47B1]
gi|416237806|ref|ZP_11631161.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis BC1]
gi|416245780|ref|ZP_11634675.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis BC8]
gi|416249012|ref|ZP_11636346.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis CO72]
gi|326561884|gb|EGE12219.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 7169]
gi|326563318|gb|EGE13585.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 46P47B1]
gi|326565972|gb|EGE16133.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 103P14B1]
gi|326568894|gb|EGE18963.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis BC1]
gi|326571867|gb|EGE21872.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis BC8]
gi|326575379|gb|EGE25304.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 101P30B1]
gi|326576534|gb|EGE26442.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis CO72]
Length = 581
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 70/109 (64%)
Query: 31 NQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVA 90
N ++ A++ A +++ E+LA L + LHGD+ Q +RN +++ K +C +LVA
Sbjct: 255 NPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVA 314
Query: 91 TDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
TDVAARG+DI I V+NYDL R ++ + HRIGR GRAG GVA L +
Sbjct: 315 TDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCS 363
>gi|423334318|ref|ZP_17312098.1| ATP-dependent RNA helicase [Lactobacillus reuteri ATCC 53608]
gi|4409804|gb|AAD20136.1| autoaggregation-mediating protein [Lactobacillus reuteri ATCC
53608]
gi|337728126|emb|CCC03217.1| ATP-dependent RNA helicase [Lactobacillus reuteri ATCC 53608]
Length = 497
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 66/97 (68%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ L + Y+ +HGD+ Q +R+ ++ KFK E ILVATDVAARGLDI + V
Sbjct: 253 DELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISGVTHVY 312
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
NYD+ D D++ HRIGRTGRAG+ GV+ T VT + D
Sbjct: 313 NYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMD 349
>gi|157804046|ref|YP_001492595.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel]
gi|157785309|gb|ABV73810.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel]
Length = 410
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 78/127 (61%), Gaps = 3/127 (2%)
Query: 16 DKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNS 75
DKE L + L+ V ++ + + +A++LAN L + + +HGD+ Q +R
Sbjct: 219 DKEKFSELTKQLDNREGSV---IIFVKTRRSADQLANMLKYENHKAEAIHGDLSQRQRER 275
Query: 76 VITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAY 135
VI F++ RI+VATDVAARGLDIPH + V+NYDL + + HRIGRTGRAG G A
Sbjct: 276 VILSFRKSNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHAL 335
Query: 136 TLVTDKD 142
+ ++ +D
Sbjct: 336 SFISPED 342
>gi|398827259|ref|ZP_10585473.1| DNA/RNA helicase, superfamily II [Phyllobacterium sp. YR531]
gi|398220105|gb|EJN06565.1| DNA/RNA helicase, superfamily II [Phyllobacterium sp. YR531]
Length = 502
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 64/97 (65%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ EL SL E+D LHGDMDQ R +++ FK + +ILVA+DVAARGLDIP +
Sbjct: 259 DVSELFRSLVKHEFDAGALHGDMDQRARTTMLANFKDNKLKILVASDVAARGLDIPDVSH 318
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V N+D+ + + HRIGRTGRAG G A+T+VT D
Sbjct: 319 VFNFDVPIHSEDYVHRIGRTGRAGRSGKAFTIVTQAD 355
>gi|322833585|ref|YP_004213612.1| DEAD/DEAH box helicase [Rahnella sp. Y9602]
gi|384258762|ref|YP_005402696.1| ATP-dependent RNA helicase DbpA [Rahnella aquatilis HX2]
gi|321168786|gb|ADW74485.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
gi|380754738|gb|AFE59129.1| ATP-dependent RNA helicase DbpA [Rahnella aquatilis HX2]
Length = 460
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 68/97 (70%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +++ + L K L L+GD++Q +R+ V+ +F CR+LVATDVAARGLDI +
Sbjct: 254 DCQDVCDDLKAKGISALALNGDLEQRDRDRVLVRFSNGSCRVLVATDVAARGLDIKQLGL 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+NY+L+ D + H HR+GRTGRAG G+A +LVT ++
Sbjct: 314 VINYELSFDPEVHVHRVGRTGRAGTSGLAVSLVTPQE 350
>gi|159117719|ref|XP_001709079.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
ATCC 50803]
gi|157437194|gb|EDO81405.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
ATCC 50803]
Length = 391
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 69/97 (71%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
+ELA L + + +H ++DQ+ERN ++ +F+ + RIL+AT++ ARG+D+ ++ V
Sbjct: 270 VKELAEKLKSAGHTLSCIHSELDQAERNKIMGEFRSGQTRILIATNIIARGIDVQNVSLV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+NYD+ R+ +T+ HRIGR+GR G KGVA VTDKDK
Sbjct: 330 INYDIPREPETYLHRIGRSGRFGRKGVAINFVTDKDK 366
>gi|414161639|ref|ZP_11417894.1| hypothetical protein HMPREF9310_02268 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410875449|gb|EKS23368.1| hypothetical protein HMPREF9310_02268 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 502
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG KG+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKKGIAVTFVNPIEMD 350
>gi|416236147|ref|ZP_11630513.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 12P80B1]
gi|326563433|gb|EGE13698.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis 12P80B1]
Length = 581
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 70/109 (64%)
Query: 31 NQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVA 90
N ++ A++ A +++ E+LA L + LHGD+ Q +RN +++ K +C +LVA
Sbjct: 255 NPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVA 314
Query: 91 TDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
TDVAARG+DI I V+NYDL R ++ + HRIGR GRAG GVA L +
Sbjct: 315 TDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCS 363
>gi|190573992|ref|YP_001971837.1| ATP-dependent RNA helicase DbpA [Stenotrophomonas maltophilia
K279a]
gi|190011914|emb|CAQ45535.1| putative ATP-dependent RNA helicase [Stenotrophomonas maltophilia
K279a]
Length = 458
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 68/98 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +E+ANSL + L LHGDM+Q +R V+ + C +LVA+DVAARGLD+ +
Sbjct: 253 DVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCNVLVASDVAARGLDVEDLAA 312
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
V+NY+L D++++ HR+GRTGRAG G+A +LV ++K
Sbjct: 313 VINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREK 350
>gi|194467658|ref|ZP_03073645.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
100-23]
gi|194454694|gb|EDX43591.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
100-23]
Length = 497
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 66/97 (68%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ L + Y+ +HGD+ Q +R+ ++ KFK E ILVATDVAARGLDI + V
Sbjct: 253 DELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISGVTHVY 312
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
NYD+ D D++ HRIGRTGRAG+ GV+ T VT + D
Sbjct: 313 NYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMD 349
>gi|412988365|emb|CCO17701.1| predicted protein [Bathycoccus prasinos]
Length = 497
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 66/105 (62%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + A++L + L + +HGD Q ER + + F+ ILVATDVAARG
Sbjct: 306 LVFVETKRGADQLEDFLCEQGKPATSIHGDRTQQEREAALKSFRAGRTPILVATDVAARG 365
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
LDIPH+ VVN+DL DID + HRIGRTGRAG KG A L DKD
Sbjct: 366 LDIPHVTHVVNFDLPTDIDDYVHRIGRTGRAGKKGQATALFGDKD 410
>gi|409202977|ref|ZP_11231180.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas flavipulchra
JG1]
Length = 462
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 73/120 (60%), Gaps = 13/120 (10%)
Query: 36 PALMNLAMQLN-------------AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82
PA+ L MQ + + +SL +D LHGD++Q +R+ + +F
Sbjct: 232 PAVQKLLMQFQPSSAVIFCNTKVECQNVCDSLYSLGFDAAALHGDLEQKDRDRTLVRFAN 291
Query: 83 QECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+ IL+ATDVAARG+D+ H+ V+NY +A D + H HR+GRTGRAGNKGVA +L++ K+
Sbjct: 292 KSVTILLATDVAARGIDVDHVDMVINYHIAHDPEVHVHRVGRTGRAGNKGVACSLMSYKE 351
>gi|294660132|ref|XP_462573.2| DEHA2G23782p [Debaryomyces hansenii CBS767]
gi|218512022|sp|Q6BGU8.2|DBP8_DEBHA RecName: Full=ATP-dependent RNA helicase DBP8
gi|199434486|emb|CAG91086.2| DEHA2G23782p [Debaryomyces hansenii CBS767]
Length = 441
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 6 GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLH 65
V Y V KE H + NL + + N AE L +L E+ V LH
Sbjct: 227 SVKYVFVPSYVKEAYLHSILNLPQYSDSLSIIFTNRTA--TAELLRRTLRKLEFRVASLH 284
Query: 66 GDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRT 125
+M Q+ER + + +FK +IL+ATDVA+RGLDIP + VVNYD+ D D HR+GRT
Sbjct: 285 SEMPQTERTNSLHRFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRT 344
Query: 126 GRAGNKGVAYTLVTDKDKD 144
RAG KG A ++V +KD D
Sbjct: 345 ARAGRKGDAISIVAEKDVD 363
>gi|189025995|ref|YP_001933767.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum
SS14]
gi|408502625|ref|YP_006870069.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pallidum str. Mexico A]
gi|189018570|gb|ACD71188.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum
SS14]
gi|408475988|gb|AFU66753.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pallidum str. Mexico A]
Length = 649
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/93 (51%), Positives = 67/93 (72%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+A+ +A SL + Y V LHGD+ QS+R ++ +F+ + RILVATDVAARG+DI I
Sbjct: 297 DADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGIDIEGITH 356
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
VVNY + D T+THR+GRTGRAG++G+A + V
Sbjct: 357 VVNYSIPHDSATYTHRVGRTGRAGSQGIAISFV 389
>gi|148543481|ref|YP_001270851.1| DEAD/DEAH box helicase [Lactobacillus reuteri DSM 20016]
gi|184152890|ref|YP_001841231.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
gi|227363631|ref|ZP_03847746.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
MM2-3]
gi|227544701|ref|ZP_03974750.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
CF48-3A]
gi|325681826|ref|ZP_08161345.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A]
gi|338203780|ref|YP_004649925.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112]
gi|148530515|gb|ABQ82514.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri DSM
20016]
gi|183224234|dbj|BAG24751.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
gi|227071342|gb|EEI09650.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
MM2-3]
gi|227185302|gb|EEI65373.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
CF48-3A]
gi|324978917|gb|EGC15865.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A]
gi|336449020|gb|AEI57635.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112]
Length = 498
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 66/97 (68%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ L + Y+ +HGD+ Q +R+ ++ KFK E ILVATDVAARGLDI + V
Sbjct: 253 DELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISGVTHVY 312
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
NYD+ D D++ HRIGRTGRAG+ GV+ T VT + D
Sbjct: 313 NYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMD 349
>gi|410645968|ref|ZP_11356422.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola agarilytica
NO2]
gi|410134307|dbj|GAC04821.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola agarilytica
NO2]
Length = 459
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 69/102 (67%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ ++ +E+A+SL VL LHGD++Q ERN V+ +F + +LVATDVA+R
Sbjct: 244 AIVFCNTKIACQEVADSLQSLGVSVLALHGDLEQRERNQVLVRFANKSVSVLVATDVASR 303
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
GLDI + V++Y + D + H HRIGRTGRA +KGVA TLV
Sbjct: 304 GLDIKEVNAVISYHITPDPEVHIHRIGRTGRAESKGVALTLV 345
>gi|379023192|ref|YP_005299853.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. CA410]
gi|376324130|gb|AFB21371.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. CA410]
Length = 410
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 78/127 (61%), Gaps = 3/127 (2%)
Query: 16 DKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNS 75
DKE L + L+ V ++ + + +A++LAN L + + +HGD+ Q +R
Sbjct: 219 DKEKFSELTKQLDNREGSV---IIFVKTRRSADQLANMLKYENHKAEAIHGDLSQRQRER 275
Query: 76 VITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAY 135
VI F++ RI+VATDVAARGLDIPH + V+NYDL + + HRIGRTGRAG G A
Sbjct: 276 VILSFRKSNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHAL 335
Query: 136 TLVTDKD 142
+ ++ +D
Sbjct: 336 SFISPED 342
>gi|332305039|ref|YP_004432890.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
gi|332172368|gb|AEE21622.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
Length = 459
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 69/102 (67%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ ++ +E+A+SL VL LHGD++Q ERN V+ +F + +LVATDVA+R
Sbjct: 244 AIVFCNTKIACQEVADSLQSLGVSVLALHGDLEQRERNQVLVRFANKSVSVLVATDVASR 303
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
GLDI + V++Y + D + H HRIGRTGRA +KGVA TLV
Sbjct: 304 GLDIKEVNAVISYHITPDPEVHIHRIGRTGRAESKGVALTLV 345
>gi|300856701|ref|YP_003781685.1| RNA helicase [Clostridium ljungdahlii DSM 13528]
gi|300436816|gb|ADK16583.1| predicted RNA helicase [Clostridium ljungdahlii DSM 13528]
Length = 525
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 73/110 (66%)
Query: 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92
E A++ + +EL L + Y+V +HGDM Q++R + + KFK LVATD
Sbjct: 242 EPSSAIIFCKTKRGVDELVEGLQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLEFLVATD 301
Query: 93 VAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VAARG+D+ ++ V+NYDL +D +++ HRIGRTGRA +G+AY+LVT ++
Sbjct: 302 VAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPRE 351
>gi|430809238|ref|ZP_19436353.1| ATP-dependent RNA helicase [Cupriavidus sp. HMR-1]
gi|429498382|gb|EKZ96892.1| ATP-dependent RNA helicase [Cupriavidus sp. HMR-1]
Length = 641
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 67/106 (63%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA L+ + LHGDM Q RN +T +R R+LVATDVAAR
Sbjct: 314 AIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVATDVAAR 373
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG GVA LV D
Sbjct: 374 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGVAINLVNHGD 419
>gi|392541114|ref|ZP_10288251.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas piscicida JCM
20779]
Length = 462
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 73/120 (60%), Gaps = 13/120 (10%)
Query: 36 PALMNLAMQLN-------------AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82
PA+ L MQ + + +SL +D LHGD++Q +R+ + +F
Sbjct: 232 PAVQKLLMQFQPNSAVIFCNTKAECQNVCDSLYSLGFDAAALHGDLEQKDRDRTLVRFAN 291
Query: 83 QECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+ IL+ATDVAARG+D+ H+ V+NY +A D + H HR+GRTGRAGNKGVA +L++ K+
Sbjct: 292 KSVTILLATDVAARGIDVDHVDMVINYHIAHDPEVHVHRVGRTGRAGNKGVACSLMSYKE 351
>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 518
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 71/97 (73%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +L + Y LHGD+ Q++R++V+ KF+ +LVATDVAARGLD+ + VV
Sbjct: 254 DELSEALQKQGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDVSGVTHVV 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+DL +D +++ HRIGRTGRAG +GVA++ VT ++ D
Sbjct: 314 NFDLPQDPESYVHRIGRTGRAGKEGVAWSFVTPREMD 350
>gi|257454198|ref|ZP_05619468.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus
SK60]
gi|257448371|gb|EEV23344.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus
SK60]
Length = 777
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 72/107 (67%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + ++EE+A L ++ LHGD+ QS+RN +++ + + I+VATDVAAR
Sbjct: 328 AIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKRNRIVSDLRSGKFDIVVATDVAAR 387
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
GLD+P+I V NYDL R ++ + HRIGR+GRAG G+A L + D+
Sbjct: 388 GLDLPNITHVFNYDLPRQVEDYVHRIGRSGRAGRTGIAINLCSRDDR 434
>gi|209808970|ref|YP_002264508.1| ATP-dependent RNA helicase DbpA [Aliivibrio salmonicida LFI1238]
gi|208010532|emb|CAQ80900.1| ATP-independent RNA helicase (DEAD/DEAH box helicase) [Aliivibrio
salmonicida LFI1238]
Length = 462
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 68/95 (71%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A+ L ++ V LHGD++Q +R+ + +F + ILVATDVAARGLDI + V+
Sbjct: 257 QEVADELRHFDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDVAARGLDIDSLDAVI 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG KG+A +L +K+
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGKKGIALSLFNNKE 351
>gi|381393521|ref|ZP_09919242.1| ATP-dependent RNA helicase SrmB [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379330737|dbj|GAB54375.1| ATP-dependent RNA helicase SrmB [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 421
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 66/94 (70%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
++ + L K+++V L GDM Q +R + ++ FK + +IL+ATDVAARGLD+P + V+N
Sbjct: 260 KMKDRLFSKDFNVAYLQGDMPQDKRMAALSSFKNGDVKILIATDVAARGLDVPDVSHVIN 319
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
YD+ R D + HRIGRTGRAG KGVA +L+ D
Sbjct: 320 YDMPRGADVYLHRIGRTGRAGAKGVAISLIEAHD 353
>gi|15639757|ref|NP_219207.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum str.
Nichols]
gi|378975404|ref|YP_005224014.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pallidum DAL-1]
gi|3323078|gb|AAC65738.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum str.
Nichols]
gi|374680804|gb|AEZ61094.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pallidum DAL-1]
Length = 649
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/93 (51%), Positives = 67/93 (72%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+A+ +A SL + Y V LHGD+ QS+R ++ +F+ + RILVATDVAARG+DI I
Sbjct: 297 DADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGIDIEGITH 356
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
VVNY + D T+THR+GRTGRAG++G+A + V
Sbjct: 357 VVNYSIPHDSATYTHRVGRTGRAGSQGIAISFV 389
>gi|357008100|ref|ZP_09073099.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 529
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 70/97 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +L + Y LHGD+ Q++R++V+ KF+ +LVATDVAARGLD+ + V+
Sbjct: 254 DELSEALQKRGYTAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDVSGVTHVI 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+DL +D +++ HRIGRTGRAG +G AYT VT ++ D
Sbjct: 314 NFDLPQDPESYVHRIGRTGRAGKEGAAYTFVTPREID 350
>gi|385331070|ref|YP_005885021.1| DEAD/DEAH box helicase [Marinobacter adhaerens HP15]
gi|311694220|gb|ADP97093.1| DEAD/DEAH box helicase domain protein [Marinobacter adhaerens HP15]
Length = 457
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/92 (53%), Positives = 65/92 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+++A L + + L LHGD++Q +R+SV+ +F Q C ILVATDVAARGLDI + V+
Sbjct: 254 DDMAAELGERGFSALPLHGDLEQRDRDSVLVRFGNQSCSILVATDVAARGLDIKSLPLVI 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
N + ARD + HTHRIGRTGRAG +G A T T
Sbjct: 314 NAEPARDPEVHTHRIGRTGRAGEQGHAVTFCT 345
>gi|73540622|ref|YP_295142.1| helicase [Ralstonia eutropha JMP134]
gi|72118035|gb|AAZ60298.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
eutropha JMP134]
Length = 632
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 67/106 (63%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA L+ + LHGDM Q RN +T +R R+LVATDVAAR
Sbjct: 315 AIVFTATKRDADSLAERLSDTGFAAGALHGDMTQGARNRTLTALRRGNLRVLVATDVAAR 374
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG GVA LV D
Sbjct: 375 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGVAINLVNHND 420
>gi|386712716|ref|YP_006179038.1| DEAD/DEAH box helicase [Halobacillus halophilus DSM 2266]
gi|384072271|emb|CCG43761.1| DEAD-box ATP-dependent RNA helicase CshA [Halobacillus halophilus
DSM 2266]
Length = 490
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A+ L + + +HGD+ Q +R S + KFKR ILVATDVAARGLDI + V
Sbjct: 253 DEVADGLQARGFSAEGIHGDLTQGKRMSTLNKFKRGRIEILVATDVAARGLDISEVSHVY 312
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++ HRIGRTGRAG KG + + VT ++KD
Sbjct: 313 NFDIPQDPESYVHRIGRTGRAGRKGESISFVTPREKD 349
>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 536
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 87/137 (63%), Gaps = 4/137 (2%)
Query: 8 AYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGD 67
AY V ++ K A L R L+ + E+ A++ + +ELA +L + Y LHGD
Sbjct: 218 AYIEVPERQKFEA--LSRLLDMESPEL--AIVFGRTKRRVDELAEALQKRGYSADGLHGD 273
Query: 68 MDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGR 127
+ Q +R++V+ KF+ +LVATDVAARGLD+ + VVN+DL +D +++ HRIGRTGR
Sbjct: 274 LSQHQRDTVMRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGR 333
Query: 128 AGNKGVAYTLVTDKDKD 144
AG +G A++ VT ++ D
Sbjct: 334 AGKEGTAWSFVTPREMD 350
>gi|294626035|ref|ZP_06704645.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292599705|gb|EFF43832.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 458
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE 72
T + K AG L+R N E N +++ E+A SL + L LHGDM+Q +
Sbjct: 226 TYRQKAVAGLLLRF----NPESSVVFCNTRKEVD--EVAGSLQEFGFSALALHGDMEQRD 279
Query: 73 RNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG 132
R+ V+ +F + C +LVA+DVAARGLD+ + VVNY+L D +T+ HRIGRT RAG G
Sbjct: 280 RDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHG 339
Query: 133 VAYTLVTDKD 142
+A +LV ++
Sbjct: 340 LALSLVAPRE 349
>gi|47221754|emb|CAG08808.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1046
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 56/132 (42%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ LV ++D +F L L G QE ++ + Q +A+ L L Y + LHG +
Sbjct: 567 HVLVIEEDNKFLKLL--ELLGHYQERGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGI 624
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
DQ +R+S+I FK CR++VAT VAARGLD+ + VVNY+ + + HR GRTGRA
Sbjct: 625 DQYDRDSIINDFKSGACRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVHRAGRTGRA 684
Query: 129 GNKGVAYTLVTD 140
GNKG AYT +T+
Sbjct: 685 GNKGFAYTFITE 696
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK 57
RAGNKG AYT +T+ +AG +++ LE + VPP L L + ++ A +K
Sbjct: 683 RAGNKGFAYTFITEDQARYAGDIIKALELSGSSVPPELEQLWVSFKDQQKAEGKIIK 739
>gi|94311500|ref|YP_584710.1| ATP-dependent RNA helicase [Cupriavidus metallidurans CH34]
gi|93355352|gb|ABF09441.1| ATP-dependent RNA helicase [Cupriavidus metallidurans CH34]
Length = 634
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 67/106 (63%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA L+ + LHGDM Q RN +T +R R+LVATDVAAR
Sbjct: 313 AIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVATDVAAR 372
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG GVA LV D
Sbjct: 373 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGVAINLVNHGD 418
>gi|425066915|ref|ZP_18470031.1| ATP-independent RNA helicase dbpA [Proteus mirabilis WGLW6]
gi|425073652|ref|ZP_18476758.1| ATP-independent RNA helicase dbpA [Proteus mirabilis WGLW4]
gi|404594923|gb|EKA95478.1| ATP-independent RNA helicase dbpA [Proteus mirabilis WGLW4]
gi|404601586|gb|EKB01978.1| ATP-independent RNA helicase dbpA [Proteus mirabilis WGLW6]
Length = 457
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 64/97 (65%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +++ +LT VL LHGDM+Q ER+ + +F CR+LVATDVAARGLDI +
Sbjct: 253 DCQDVYEALTESNQSVLALHGDMEQKERDQTLIRFANGSCRVLVATDVAARGLDIKALEM 312
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+NY+L+ D + H HRIGRT RAG G+A + ++
Sbjct: 313 VINYELSHDPEVHIHRIGRTARAGESGLAISFCAPEE 349
>gi|340519980|gb|EGR50217.1| predicted protein [Trichoderma reesei QM6a]
Length = 722
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 87/147 (59%), Gaps = 5/147 (3%)
Query: 3 GNKGVAYTLVTDKDKEFAGH-----LVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK 57
GN G A V + + AG ++ + + Q PP ++ + ++ N + +A +
Sbjct: 519 GNAGEAVDTVEQRVEFVAGEDRRKKRLQEILSSGQFAPPIIVFVNIKRNCDAVARDIKAM 578
Query: 58 EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDT 117
+ V+ LHG Q +R + + + + ++LVATD+A RG+D+P + V+N+++A +I++
Sbjct: 579 GWSVVTLHGSKTQEQREAALASVRSGQTQVLVATDLAGRGIDVPDVSLVINFNMATNIES 638
Query: 118 HTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+THRIGRTGRAG GVA T + ++D D
Sbjct: 639 YTHRIGRTGRAGKSGVAITFLGNEDAD 665
>gi|268573086|ref|XP_002641520.1| Hypothetical protein CBG09816 [Caenorhabditis briggsae]
Length = 628
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 66/98 (67%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A +LA L + Y V+ +HGD+ Q ER + F+ ILVAT VAARGLDIP+++ V
Sbjct: 433 ASDLAYYLNRQNYQVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHV 492
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYDL D+D + HRIGRTGR GN G+A + DK+++
Sbjct: 493 INYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRN 530
>gi|423721477|ref|ZP_17695659.1| DEAD/DEAH box helicase family protein [Geobacillus
thermoglucosidans TNO-09.020]
gi|383365528|gb|EID42823.1| DEAD/DEAH box helicase family protein [Geobacillus
thermoglucosidans TNO-09.020]
Length = 465
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L ++ Y +HGD+ Q++R SV+ KFK ILVATDVAARGLDI + V
Sbjct: 254 DELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D +++ HRIGRTGRAG GVA T VT ++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPRE 348
>gi|17510307|ref|NP_491112.1| Protein VBH-1, isoform b [Caenorhabditis elegans]
gi|373220253|emb|CCD72827.1| Protein VBH-1, isoform b [Caenorhabditis elegans]
Length = 644
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/97 (50%), Positives = 65/97 (67%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A ELA L ++ + +HGD+ Q ER + F+ +C ILVAT VAARGLDIP++R V
Sbjct: 395 ANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHV 454
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+NYDL D D + HRIGRTGR GN G+A + DK++
Sbjct: 455 INYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNR 491
>gi|17510309|ref|NP_491113.1| Protein VBH-1, isoform a [Caenorhabditis elegans]
gi|373220252|emb|CCD72826.1| Protein VBH-1, isoform a [Caenorhabditis elegans]
Length = 641
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/97 (50%), Positives = 65/97 (67%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A ELA L ++ + +HGD+ Q ER + F+ +C ILVAT VAARGLDIP++R V
Sbjct: 392 ANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHV 451
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+NYDL D D + HRIGRTGR GN G+A + DK++
Sbjct: 452 INYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNR 488
>gi|403381239|ref|ZP_10923296.1| DEAD/DEAH box helicase [Paenibacillus sp. JC66]
Length = 522
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 70/97 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +L + Y LHGD+ Q++R++V+ KF+ +LVATDVAARGLD+ + VV
Sbjct: 254 DELSEALQKRGYSAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDVSGVSHVV 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+DL +D +++ HRIGRTGRAG +G A+T VT ++ D
Sbjct: 314 NFDLPQDPESYVHRIGRTGRAGKEGTAWTFVTPREID 350
>gi|227358108|ref|ZP_03842449.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
gi|227161444|gb|EEI46481.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
Length = 457
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 64/97 (65%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +++ +LT VL LHGDM+Q ER+ + +F CR+LVATDVAARGLDI +
Sbjct: 253 DCQDVYEALTESNQSVLALHGDMEQKERDQTLIRFANGSCRVLVATDVAARGLDIKALEM 312
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+NY+L+ D + H HRIGRT RAG G+A + ++
Sbjct: 313 VINYELSHDPEVHIHRIGRTARAGESGLAISFCAPEE 349
>gi|78048143|ref|YP_364318.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78036573|emb|CAJ24264.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 458
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE 72
T + K AG L+R N E N +++ E+A SL + L LHGDM+Q +
Sbjct: 226 TYRQKAVAGLLLRF----NPESSVVFCNTRKEVD--EVAGSLQEFGFSALALHGDMEQRD 279
Query: 73 RNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG 132
R+ V+ +F + C +LVA+DVAARGLD+ + VVNY+L D +T+ HRIGRT RAG G
Sbjct: 280 RDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHG 339
Query: 133 VAYTLVTDKD 142
+A +LV ++
Sbjct: 340 LALSLVAPRE 349
>gi|390992320|ref|ZP_10262557.1| ATP-independent RNA helicase DbpA [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|372552936|emb|CCF69532.1| ATP-independent RNA helicase DbpA [Xanthomonas axonopodis pv.
punicae str. LMG 859]
Length = 458
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE 72
T + K AG L+R N E N +++ E+A SL + L LHGDM+Q +
Sbjct: 226 TYRQKAVAGLLLRF----NPESSVVFCNTRKEVD--EVAGSLQEFGFSALALHGDMEQRD 279
Query: 73 RNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG 132
R+ V+ +F + C +LVA+DVAARGLD+ + VVNY+L D +T+ HRIGRT RAG G
Sbjct: 280 RDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHG 339
Query: 133 VAYTLVTDKD 142
+A +LV ++
Sbjct: 340 LALSLVAPRE 349
>gi|300173740|ref|YP_003772906.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc gasicomitatum LMG 18811]
gi|333446960|ref|ZP_08481902.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc inhae KCTC 3774]
gi|299888119|emb|CBL92087.1| ATP-dependent RNA helicase/Autoaggregation-mediating protein
[Leuconostoc gasicomitatum LMG 18811]
Length = 538
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 65/97 (67%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
EELA L + Y LHGD+ Q R+ V+ +FK E ILVATDVAARGLD+ + V
Sbjct: 253 EELARGLEARGYHASGLHGDLTQQMRSRVLAQFKSHEINILVATDVAARGLDVKDVSHVY 312
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++ HRIGRTGRAG KGV+ T V+ + D
Sbjct: 313 NFDIPQDPESYVHRIGRTGRAGAKGVSVTFVSPNEMD 349
>gi|197284022|ref|YP_002149894.1| ATP-dependent RNA helicase DbpA [Proteus mirabilis HI4320]
gi|194681509|emb|CAR40383.1| ATP-independent RNA helicase [Proteus mirabilis HI4320]
Length = 457
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 64/97 (65%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +++ +LT VL LHGDM+Q ER+ + +F CR+LVATDVAARGLDI +
Sbjct: 253 DCQDVYEALTESNQSVLALHGDMEQKERDQTLIRFANGSCRVLVATDVAARGLDIKALEM 312
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+NY+L+ D + H HRIGRT RAG G+A + ++
Sbjct: 313 VINYELSHDPEVHIHRIGRTARAGESGLAISFCAPEE 349
>gi|325928093|ref|ZP_08189306.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
gi|325541591|gb|EGD13120.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
Length = 458
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE 72
T + K AG L+R N E N +++ E+A SL + L LHGDM+Q +
Sbjct: 226 TYRQKAVAGLLLRF----NPESSVVFCNTRKEVD--EVAGSLQEFGFSALALHGDMEQRD 279
Query: 73 RNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG 132
R+ V+ +F + C +LVA+DVAARGLD+ + VVNY+L D +T+ HRIGRT RAG G
Sbjct: 280 RDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHG 339
Query: 133 VAYTLVTDKD 142
+A +LV ++
Sbjct: 340 LALSLVAPRE 349
>gi|401411625|ref|XP_003885260.1| putative DEAD/DEAH box helicase [Neospora caninum Liverpool]
gi|325119679|emb|CBZ55232.1| putative DEAD/DEAH box helicase [Neospora caninum Liverpool]
Length = 694
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 66/90 (73%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++L L ++ L +HGD +Q ER+ ++ F++ +C IL+ATDVA+RGLDI ++ V+
Sbjct: 559 DQLCRELRYRQLRALAIHGDKEQRERDRILHDFRKGDCEILLATDVASRGLDIHDVKFVI 618
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTL 137
NYD+ ++I+++ HRIGRTGRAGNKG A +
Sbjct: 619 NYDVPKNIESYIHRIGRTGRAGNKGTAISF 648
>gi|294666446|ref|ZP_06731689.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292603752|gb|EFF47160.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 458
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE 72
T + K AG L+R N E N +++ E+A SL + L LHGDM+Q +
Sbjct: 226 TYRQKAVAGLLLRF----NPESSVVFCNTRKEVD--EVAGSLQEFGFSALALHGDMEQRD 279
Query: 73 RNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG 132
R+ V+ +F + C +LVA+DVAARGLD+ + VVNY+L D +T+ HRIGRT RAG G
Sbjct: 280 RDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHG 339
Query: 133 VAYTLVTDKD 142
+A +LV ++
Sbjct: 340 LALSLVAPRE 349
>gi|258516257|ref|YP_003192479.1| DEAD/DEAH box helicase [Desulfotomaculum acetoxidans DSM 771]
gi|257779962|gb|ACV63856.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
DSM 771]
Length = 539
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL SL V+ Y LHGD+ Q +RN V+ +FK + LVATDVAARGLDI ++ V+
Sbjct: 265 DELVASLQVRGYQAAGLHGDLSQYQRNHVMRQFKAGQVEFLVATDVAARGLDIENVSHVI 324
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D + + HRIGRTGRAG G+A +LV+ +D
Sbjct: 325 NFDVPQDPEFYVHRIGRTGRAGKTGMAISLVSPRD 359
>gi|418516475|ref|ZP_13082648.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|410706754|gb|EKQ65211.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 458
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE 72
T + K AG L+R N E N +++ E+A SL + L LHGDM+Q +
Sbjct: 226 TYRQKAVAGLLLRF----NPESSVVFCNTRKEVD--EVAGSLQEFGFSALALHGDMEQRD 279
Query: 73 RNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG 132
R+ V+ +F + C +LVA+DVAARGLD+ + VVNY+L D +T+ HRIGRT RAG G
Sbjct: 280 RDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHG 339
Query: 133 VAYTLVTDKD 142
+A +LV ++
Sbjct: 340 LALSLVAPRE 349
>gi|418523092|ref|ZP_13089117.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410700362|gb|EKQ58921.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
Length = 458
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE 72
T + K AG L+R N E N +++ E+A SL + L LHGDM+Q +
Sbjct: 226 TYRQKAVAGLLLRF----NPESSVVFCNTRKEVD--EVAGSLQEFGFSALALHGDMEQRD 279
Query: 73 RNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG 132
R+ V+ +F + C +LVA+DVAARGLD+ + VVNY+L D +T+ HRIGRT RAG G
Sbjct: 280 RDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHG 339
Query: 133 VAYTLVTDKD 142
+A +LV ++
Sbjct: 340 LALSLVAPRE 349
>gi|224073176|ref|XP_002304009.1| predicted protein [Populus trichocarpa]
gi|222841441|gb|EEE78988.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 59/94 (62%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+ L + L + + +HGD Q ER + FK ILVATDVAARGLDIPH+ V
Sbjct: 235 ADSLEHWLCINGFPATSIHGDRSQQEREQALRSFKTGNTPILVATDVAARGLDIPHVAHV 294
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
VN+DL DID + HRIGRTGRAGN G+A +
Sbjct: 295 VNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNE 328
>gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
gi|336236996|ref|YP_004589612.1| DEAD/DEAH box helicase [Geobacillus thermoglucosidasius C56-YS93]
gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
gi|335363851|gb|AEH49531.1| DEAD/DEAH box helicase domain protein [Geobacillus
thermoglucosidasius C56-YS93]
Length = 465
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L ++ Y +HGD+ Q++R SV+ KFK ILVATDVAARGLDI + V
Sbjct: 254 DELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D +++ HRIGRTGRAG GVA T VT ++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPRE 348
>gi|346725284|ref|YP_004851953.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv.
citrumelo F1]
gi|346650031|gb|AEO42655.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv.
citrumelo F1]
Length = 458
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE 72
T + K AG L+R N E N +++ E+A SL + L LHGDM+Q +
Sbjct: 226 TYRQKAVAGLLLRF----NPESSVVFCNTRKEVD--EVAGSLQEFGFSALALHGDMEQRD 279
Query: 73 RNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG 132
R+ V+ +F + C +LVA+DVAARGLD+ + VVNY+L D +T+ HRIGRT RAG G
Sbjct: 280 RDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHG 339
Query: 133 VAYTLVTDKD 142
+A +LV ++
Sbjct: 340 LALSLVAPRE 349
>gi|255527323|ref|ZP_05394201.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
gi|255508970|gb|EET85332.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
P7]
Length = 527
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 74/110 (67%)
Query: 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92
E A++ + +EL S+ + Y+V +HGDM Q++R + + KFK LVATD
Sbjct: 241 EPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFLVATD 300
Query: 93 VAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VAARG+D+ + V+NYDL +D++++ HRIGRTGRA +G+AY+LVT ++
Sbjct: 301 VAARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSLVTPRE 350
>gi|255580688|ref|XP_002531166.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223529236|gb|EEF31209.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 585
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 60/96 (62%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+ L N L V + +HGD Q ER + FK + ILVATDVAARGLDIPH+ V
Sbjct: 400 ADSLENWLCVNGFPATTIHGDRTQQEREMALRSFKSGKTPILVATDVAARGLDIPHVAHV 459
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VN+DL DID + HRIGRTGRAG G+A + +
Sbjct: 460 VNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENN 495
>gi|241618030|ref|XP_002408280.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
gi|215502947|gb|EEC12441.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
Length = 1025
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 3/130 (2%)
Query: 11 LVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQ 70
++ D+DK F + L G Q+ A++ + Q +A+ L L ++ + LHG +DQ
Sbjct: 576 IINDEDKFFK---LLELLGLYQDKGSAIVFVDKQEHADVLLKDLMKASHNAMALHGGIDQ 632
Query: 71 SERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130
+R+S I FK + +L+AT VAARGLD+ H+ VVNYD + + HR GRTGRAGN
Sbjct: 633 FDRDSTIVDFKAGKVGVLIATSVAARGLDVKHLILVVNYDCPNHYEDYVHRCGRTGRAGN 692
Query: 131 KGVAYTLVTD 140
KG AYT +TD
Sbjct: 693 KGYAYTFITD 702
Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK 57
RAGNKG AYT +TD +A L + LE + VP L L A++ A V+
Sbjct: 689 RAGNKGYAYTFITDDQGRYAADLSKALELSGNPVPEDLQRLFNNYKAKQEAEGKKVR 745
>gi|302338831|ref|YP_003804037.1| DEAD/DEAH box helicase [Spirochaeta smaragdinae DSM 11293]
gi|301636016|gb|ADK81443.1| DEAD/DEAH box helicase domain protein [Spirochaeta smaragdinae DSM
11293]
Length = 542
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 66/97 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + N L + YD LHGD+ Q++R + KFKRQ ILVATDVAARG+D+ ++
Sbjct: 256 DVDTVVNHLLDRGYDAAPLHGDISQAQRERTLGKFKRQNINILVATDVAARGIDVNNLTH 315
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+NY L +D + + HRIGRTGRAGN+G A T +T +
Sbjct: 316 VINYSLPQDPEAYVHRIGRTGRAGNEGTAITFITPSE 352
>gi|239825779|ref|YP_002948403.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
gi|239806072|gb|ACS23137.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
Length = 466
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L ++ Y +HGD+ Q++R SV+ KFK ILVATDVAARGLDI + V
Sbjct: 254 DELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D +++ HRIGRTGRAG GVA T VT ++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPRE 348
>gi|182418672|ref|ZP_02949948.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
gi|237669697|ref|ZP_04529674.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182377449|gb|EDT75004.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
gi|237654771|gb|EEP52334.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 524
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 66/95 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL L K Y V +HGDM Q+ R + ++KFK +L+ATDVAARG+D+ + V
Sbjct: 256 DELVQELQSKGYMVEGMHGDMTQAHRLTTLSKFKEGTLNLLIATDVAARGIDVDGVTHVF 315
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL +D++++ HRIGRTGRA +G AY+LVT KD
Sbjct: 316 NYDLPQDVESYVHRIGRTGRANREGTAYSLVTPKD 350
>gi|451822522|ref|YP_007458723.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451788501|gb|AGF59469.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 525
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 64/95 (67%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL L K Y V +HGDM Q+ R + + KFK +L+ATDVAARG+D+ + V
Sbjct: 257 DELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLSLLIATDVAARGIDVEGVTHVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL +D++++ HRIGRTGRA G AY+LVT KD
Sbjct: 317 NYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKD 351
>gi|373453962|ref|ZP_09545842.1| hypothetical protein HMPREF9453_00011 [Dialister succinatiphilus
YIT 11850]
gi|371936225|gb|EHO63954.1| hypothetical protein HMPREF9453_00011 [Dialister succinatiphilus
YIT 11850]
Length = 424
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 84/132 (63%), Gaps = 6/132 (4%)
Query: 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLL--LHGDMDQ 70
T K ++F LVR+L N + N + A E+A L +E D ++ +HGDM Q
Sbjct: 221 TTKPRKFK-LLVRHLTEMNPYMAVVFCN--TREEAHEIAGKLQ-EETDFVVDEIHGDMSQ 276
Query: 71 SERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130
+RN VI +F++ + +ILVA+D+AARGLD+ I V NYD+ R+++ + HRIGRTGRAG
Sbjct: 277 GQRNQVIREFEKAKTQILVASDIAARGLDVEGITHVFNYDIPRNLEYYVHRIGRTGRAGT 336
Query: 131 KGVAYTLVTDKD 142
KG+A T T +D
Sbjct: 337 KGIAITYATPED 348
>gi|255079594|ref|XP_002503377.1| predicted protein [Micromonas sp. RCC299]
gi|226518643|gb|ACO64635.1| predicted protein [Micromonas sp. RCC299]
Length = 489
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Query: 64 LHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIG 123
+HGDM QS+R + + F++ E +LVATDVAARGLD+P +RTVV+ RDI++H HRIG
Sbjct: 347 MHGDMHQSDRAAALRAFRKGETHVLVATDVAARGLDVPSVRTVVSLHPPRDIESHVHRIG 406
Query: 124 RTGRAGNK-GVAYTLVTDKDKDGELRS 149
RTGRAGNK G A+TLV D + S
Sbjct: 407 RTGRAGNKDGRAFTLVARTDGNARFLS 433
>gi|28897062|ref|NP_796667.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus RIMD
2210633]
gi|153837936|ref|ZP_01990603.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ3810]
gi|260363937|ref|ZP_05776676.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus K5030]
gi|260877980|ref|ZP_05890335.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AN-5034]
gi|260896348|ref|ZP_05904844.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus
Peru-466]
gi|260900676|ref|ZP_05909071.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ4037]
gi|417321185|ref|ZP_12107725.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus 10329]
gi|433656616|ref|YP_007273995.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus BB22OP]
gi|28805270|dbj|BAC58551.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus RIMD
2210633]
gi|149748714|gb|EDM59565.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ3810]
gi|308085198|gb|EFO34893.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus
Peru-466]
gi|308090073|gb|EFO39768.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AN-5034]
gi|308110247|gb|EFO47787.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ4037]
gi|308112560|gb|EFO50100.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus K5030]
gi|328471865|gb|EGF42742.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus 10329]
gi|432507304|gb|AGB08821.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus BB22OP]
Length = 459
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A+ L + + V+ +HGD++Q ER+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QNVADELHHRGFSVIDIHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG+KG+A++ +KD
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKD 351
>gi|428211079|ref|YP_007084223.1| DNA/RNA helicase [Oscillatoria acuminata PCC 6304]
gi|427999460|gb|AFY80303.1| DNA/RNA helicase, superfamily II [Oscillatoria acuminata PCC 6304]
Length = 484
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 68/97 (70%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A EL + L + V HGD++QS+R +I +F++Q+ R +VATD+AARGLD+ H+ V
Sbjct: 255 AAELTSQLQAAGHSVDEYHGDLNQSQRERLIDRFRKQQVRWIVATDIAARGLDVDHLTHV 314
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+NYDL ++++ HRIGRTGRAG +G A +L+ D+
Sbjct: 315 INYDLPDQVESYVHRIGRTGRAGREGTAISLIQPFDR 351
>gi|354580517|ref|ZP_08999422.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353202948|gb|EHB68397.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 529
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 69/97 (71%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L + Y LHGD+ Q +R++V+ KF+ +LVATDVAARGLD+ + VV
Sbjct: 254 DELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVATDVAARGLDVSGVTHVV 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+DL +D +++ HRIGRTGRAG +G A++ VT ++ D
Sbjct: 314 NFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMD 350
>gi|429961580|gb|ELA41125.1| hypothetical protein VICG_01824 [Vittaforma corneae ATCC 50505]
Length = 454
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 52/113 (46%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + M++ A EL + + Y V+ LHGD Q +R S + KFKR E ILVAT VAARG
Sbjct: 267 LIFVQMKVTAHELEGKIRLWGYPVVSLHGDKLQPDRQSALNKFKRGEVNILVATSVAARG 326
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
+D+ I+TV+NYD DI + HRIGRTGR G G A + ++ D E++S+
Sbjct: 327 IDVQDIKTVINYDFPNDIKEYIHRIGRTGRQGRSGCALSFISG-DIAPEIKSE 378
>gi|21243124|ref|NP_642706.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv. citri
str. 306]
gi|21108643|gb|AAM37242.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
Length = 458
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE 72
T + K AG L+R N E N +++ E+A SL + L LHGDM+Q +
Sbjct: 226 TYRQKAVAGLLLRF----NPESSVVFCNTRKEVD--EVAGSLQEFGFSALALHGDMEQRD 279
Query: 73 RNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG 132
R+ V+ +F + C +LVA+DVAARGLD+ + VVNY+L D +T+ HRIGRT RAG G
Sbjct: 280 RDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHG 339
Query: 133 VAYTLVTDKD 142
+A +LV ++
Sbjct: 340 LALSLVAPRE 349
>gi|408907437|emb|CCM11467.1| Cold-shock DEAD-box protein A [Helicobacter heilmannii ASB1.4]
Length = 465
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 72/110 (65%), Gaps = 1/110 (0%)
Query: 31 NQEVPP-ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILV 89
++E P +++ + M+ +EL L+ K Y LHGDM+Q R + I FK ++ +L+
Sbjct: 246 DKETPSKSIIFMRMKREVDELHQFLSAKGYKTTPLHGDMEQRARQTSIKAFKSKQADVLI 305
Query: 90 ATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
ATDVA+RGLDI + V NY L + +++ HRIGRTGRAG KGVA TLVT
Sbjct: 306 ATDVASRGLDISDVSHVFNYHLPINTESYIHRIGRTGRAGKKGVAITLVT 355
>gi|420408247|ref|ZP_14907406.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4216]
gi|393025732|gb|EJB26838.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4216]
Length = 492
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + + FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLVSKNYKSTALHGDMDQRDRRASVMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|194246516|ref|YP_002004155.1| superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
gi|193806873|emb|CAP18302.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
Length = 531
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 46/93 (49%), Positives = 65/93 (69%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +E+ L + V LHGD+ Q++R V+ F+ Q+ +IL+ATDVAARG+DI I
Sbjct: 254 DVDEINAYLQENNFSVDFLHGDLKQNQRQQVMNNFRNQKIKILIATDVAARGIDISSITM 313
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
V+NYDL+R + + HRIGRTGRAG KG+AY+ V
Sbjct: 314 VINYDLSRQNEIYVHRIGRTGRAGLKGLAYSFV 346
>gi|347751920|ref|YP_004859485.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
coagulans 36D1]
gi|347584438|gb|AEP00705.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
Length = 475
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 70/95 (73%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELAN+L ++ Y +HGD+ Q++R SV+ KFK + +LVATDVAARGLDI + V
Sbjct: 254 DELANALNLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD+ +D +++ HRIGRTGRAG +G+A T VT ++
Sbjct: 314 NYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPRE 348
>gi|349804597|gb|AEQ17771.1| putative dead (asp-glu-ala-asp) box polypeptide 42 [Hymenochirus
curtipes]
Length = 294
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/56 (82%), Positives = 52/56 (92%)
Query: 89 VATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
VATDVAARGLDIP I+TV+NYD+ARDIDT+THRIGRTGRAG KGVAYTL+T KD +
Sbjct: 138 VATDVAARGLDIPPIKTVINYDVARDIDTYTHRIGRTGRAGEKGVAYTLLTPKDSN 193
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 176 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQYVSKELLDLAMQ 219
>gi|337745879|ref|YP_004640041.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|379719836|ref|YP_005311967.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|386722433|ref|YP_006188759.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|336297068|gb|AEI40171.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus KNP414]
gi|378568508|gb|AFC28818.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384089558|gb|AFH60994.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
Length = 537
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 70/97 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +L + Y LHGD+ Q++R++V+ KF+ +LVATDVAARGLD+ + V+
Sbjct: 254 DELSEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDVSGVTHVI 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+DL +D +++ HRIGRTGRAG +G AYT VT ++ D
Sbjct: 314 NFDLPQDPESYVHRIGRTGRAGKEGAAYTFVTPREID 350
>gi|339234807|ref|XP_003378958.1| putative ATP-dependent RNA helicase Pl10 [Trichinella spiralis]
gi|316978431|gb|EFV61418.1| putative ATP-dependent RNA helicase Pl10 [Trichinella spiralis]
Length = 552
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/98 (50%), Positives = 67/98 (68%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A +LA L+ + Y V+ +HGD+ Q ER + F+ ILVAT VAARGLDIP+++ V
Sbjct: 358 AADLAYFLSGERYSVVAIHGDLKQFEREQHLESFRSGNTPILVATAVAARGLDIPNVKHV 417
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYDL +ID + HRIGRTGR GN G+A T +K+K+
Sbjct: 418 INYDLPSEIDEYVHRIGRTGRVGNIGLATTFFNNKNKN 455
>gi|224477065|ref|YP_002634671.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
gi|222421672|emb|CAL28486.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
Length = 507
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG KG+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKKGIAVTFVNPIEMD 350
>gi|194290281|ref|YP_002006188.1| DEAD/DEAH box helicase [Cupriavidus taiwanensis LMG 19424]
gi|193224116|emb|CAQ70125.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP-DEPENDENT
RNA HELICASE (C-terminal)(rhlE-like) [Cupriavidus
taiwanensis LMG 19424]
Length = 624
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 67/106 (63%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA L+ + LHGDM Q RN +T +R R+LVATDVAAR
Sbjct: 313 AIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVATDVAAR 372
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG G+A LV D
Sbjct: 373 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHND 418
>gi|421746736|ref|ZP_16184510.1| ATP-dependent RNA helicase [Cupriavidus necator HPC(L)]
gi|409774699|gb|EKN56282.1| ATP-dependent RNA helicase [Cupriavidus necator HPC(L)]
Length = 606
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 67/106 (63%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA L+ + LHGDM Q RN +T +R R+LVATDVAAR
Sbjct: 313 AIVFTATKRDADSLAERLSDTGFAAGALHGDMTQGARNRTLTALRRGNLRVLVATDVAAR 372
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG GVA LV D
Sbjct: 373 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGVAINLVNHND 418
>gi|421711256|ref|ZP_16150599.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R030b]
gi|407212405|gb|EKE82267.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R030b]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420424845|ref|ZP_14923909.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-5]
gi|393043432|gb|EJB44436.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-5]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|158321361|ref|YP_001513868.1| DEAD/DEAH box helicase [Alkaliphilus oremlandii OhILAs]
gi|158141560|gb|ABW19872.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
OhILAs]
Length = 461
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 68/95 (71%)
Query: 50 LANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109
L+++L K + LHGDM Q++R V+ +F+ + +ILVATDVAARG+D+ I V NY
Sbjct: 257 LSDALIEKGFSCDELHGDMTQAKREKVMKEFRNAKLQILVATDVAARGIDVEGITHVFNY 316
Query: 110 DLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
D+ +D++ + HRIGRTGRAG+KG+A T KD+D
Sbjct: 317 DIPQDVEGYIHRIGRTGRAGDKGMAITFAAPKDRD 351
>gi|325916975|ref|ZP_08179217.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
35937]
gi|325536826|gb|EGD08580.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
35937]
Length = 458
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE 72
T + K AG L+R N E N +++ E+A SL + L LHGDM+Q +
Sbjct: 226 TYRQKAVAGLLLRF----NPESSVVFCNTRKEVD--EVAGSLQEFGFSALALHGDMEQRD 279
Query: 73 RNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG 132
R+ V+ +F + C +LVA+DVAARGLD+ + VVNY+L D +T+ HRIGRT RAG G
Sbjct: 280 RDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHG 339
Query: 133 VAYTLVTDKD 142
+A +LV ++
Sbjct: 340 LALSLVAPRE 349
>gi|420485287|ref|ZP_14983905.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4]
gi|420515778|ref|ZP_15014241.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4c]
gi|420517482|ref|ZP_15015936.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4d]
gi|393103422|gb|EJC03985.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4]
gi|393122981|gb|EJC23450.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4d]
gi|393124077|gb|EJC24545.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-4c]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420435575|ref|ZP_14934574.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-27]
gi|393051434|gb|EJB52385.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-27]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|407475055|ref|YP_006789455.1| DEAD/DEAH box helicase [Clostridium acidurici 9a]
gi|407051563|gb|AFS79608.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium acidurici 9a]
Length = 526
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 69/110 (62%)
Query: 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92
E A++ + +EL L V+ Y+V +HGDM Q R + + KFK LVATD
Sbjct: 242 EPSSAIIFCKTKKGVDELVEGLQVRGYNVEGMHGDMTQDHRMNTLRKFKEGNLEFLVATD 301
Query: 93 VAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VAARG+DI I V NY+L +D D++ HRIGRTGRA +G AYTLVT ++
Sbjct: 302 VAARGIDIESITHVFNYELPQDSDSYVHRIGRTGRANRQGTAYTLVTARE 351
>gi|420456516|ref|ZP_14955337.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-16]
gi|393075147|gb|EJB75902.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-16]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLVSKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|255560866|ref|XP_002521446.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223539345|gb|EEF40936.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 781
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/95 (51%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++LA +LT + + +HGD QSER+ V+++F+ +LVATDVAARGLDI IR V+
Sbjct: 422 DQLARNLT-RTFGAAAIHGDKSQSERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVI 480
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD ++ + HRIGRTGRAG GVAYT D+D
Sbjct: 481 NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQD 515
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG GVAYT D+D ++A L++ LEGA+Q VPP + ++A
Sbjct: 500 RAGATGVAYTFFGDQDAKYASDLIKVLEGASQRVPPEIRDMA 541
>gi|79513425|ref|NP_196965.2| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana]
gi|332004671|gb|AED92054.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana]
Length = 712
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/95 (49%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++LA +LT + + +HGD Q+ER+ V+ +F+ +LVATDVAARGLD+ IR VV
Sbjct: 488 DQLARNLT-RTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVV 546
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD ++ + HRIGRTGRAG G+AYT D+D
Sbjct: 547 NYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQD 581
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG G+AYT D+D + A L++ LEGANQ+VPP + +A +
Sbjct: 566 RAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMATR 609
>gi|420454799|ref|ZP_14953629.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-14]
gi|393073149|gb|EJB73923.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-14]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|384890631|ref|YP_005764764.1| cold-shock DEAD-box protein A [Helicobacter pylori 908]
gi|307636940|gb|ADN79390.1| cold-shock DEAD-box protein A [Helicobacter pylori 908]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|209518020|ref|ZP_03266851.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209501524|gb|EEA01549.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 532
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 75/117 (64%), Gaps = 5/117 (4%)
Query: 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
HL+R+ G +Q A++ A +++A++LA L ++ LHGD+ Q RN I +
Sbjct: 293 HLLRD-AGLDQ----AIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTIRALR 347
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+ R+LVATDVAARG+DIP I V NYDL + + + HRIGRTGRAG GVA +LV
Sbjct: 348 ERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGVAVSLV 404
>gi|420524110|ref|ZP_15022520.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-13b]
gi|393133269|gb|EJC33686.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-13b]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420490274|ref|ZP_14988860.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-13]
gi|393109617|gb|EJC10148.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-13]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420480288|ref|ZP_14978932.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-1]
gi|420510736|ref|ZP_15009225.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-1b]
gi|393098201|gb|EJB98793.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-1]
gi|393121244|gb|EJC21727.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-1b]
Length = 492
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420447374|ref|ZP_14946266.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-43]
gi|393062789|gb|EJB63637.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-43]
Length = 492
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLVSKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420441616|ref|ZP_14940561.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-36]
gi|393059745|gb|EJB60620.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-36]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420411610|ref|ZP_14910742.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4228]
gi|393030399|gb|EJB31478.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4228]
Length = 492
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|390351458|ref|XP_796437.3| PREDICTED: probable ATP-dependent RNA helicase DDX41
[Strongylocentrotus purpuratus]
Length = 620
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 75/126 (59%)
Query: 23 LVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82
+V LE + PP L+ + + +++ L +K + + +HG DQ ER I +F+
Sbjct: 419 MVYLLECLQKAPPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEERTKSIEQFRA 478
Query: 83 QECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+E +LVATDVA++GLD P I+ V+NYD+ DI+ + HRIGRTGR G G+A T +
Sbjct: 479 REKDVLVATDVASKGLDFPDIQHVINYDMPEDIENYVHRIGRTGRCGKTGIATTFINKAC 538
Query: 143 KDGELR 148
+ LR
Sbjct: 539 DESVLR 544
>gi|333983131|ref|YP_004512341.1| DEAD/DEAH box helicase [Methylomonas methanica MC09]
gi|333807172|gb|AEF99841.1| DEAD/DEAH box helicase domain protein [Methylomonas methanica MC09]
Length = 462
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 68/97 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+++A SL + V LHGD++Q +R+ V+ +F + C +LVATDVAARGLDI ++ V+
Sbjct: 256 QDVAGSLANCGFSVQALHGDLEQKDRDQVLVRFANKSCSVLVATDVAARGLDIKELQAVI 315
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
NY+L D + + HRIGR+GRAG KG+A +L D + D
Sbjct: 316 NYELPWDPEVYVHRIGRSGRAGKKGLALSLCADAELD 352
>gi|7573310|emb|CAB87628.1| DRH1 DEAD box protein-like [Arabidopsis thaliana]
Length = 713
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/95 (49%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++LA +LT + + +HGD Q+ER+ V+ +F+ +LVATDVAARGLD+ IR VV
Sbjct: 488 DQLARNLT-RTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVV 546
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD ++ + HRIGRTGRAG G+AYT D+D
Sbjct: 547 NYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQD 581
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG G+AYT D+D + A L++ LEGANQ+VPP + +A +
Sbjct: 566 RAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMATR 609
>gi|91784149|ref|YP_559355.1| ATP-dependent RNA helicase [Burkholderia xenovorans LB400]
gi|91688103|gb|ABE31303.1| Putative ATP-dependent RNA helicase [Burkholderia xenovorans LB400]
Length = 537
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 75/117 (64%), Gaps = 5/117 (4%)
Query: 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
HL+R+ G +Q A++ A +++A++LA L ++ LHGD+ Q RN I +
Sbjct: 305 HLLRD-SGLDQ----AIVFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRTIRALR 359
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+ R+LVATDVAARG+DIP I V NYDL + + + HRIGRTGRAG G+A +LV
Sbjct: 360 ERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSLV 416
>gi|15644875|ref|NP_207045.1| DEAD/DEAH box helicase [Helicobacter pylori 26695]
gi|410023485|ref|YP_006892738.1| DEAD/DEAH box helicase [Helicobacter pylori Rif1]
gi|410501253|ref|YP_006935780.1| DEAD/DEAH box helicase [Helicobacter pylori Rif2]
gi|410681772|ref|YP_006934174.1| DEAD/DEAH box helicase [Helicobacter pylori 26695]
gi|419416982|ref|ZP_13957482.1| DEAD/DEAH box helicase [Helicobacter pylori P79]
gi|2313340|gb|AAD07315.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Helicobacter
pylori 26695]
gi|384374141|gb|EIE29566.1| DEAD/DEAH box helicase [Helicobacter pylori P79]
gi|409893413|gb|AFV41471.1| DEAD/DEAH box helicase [Helicobacter pylori 26695]
gi|409895142|gb|AFV43064.1| DEAD/DEAH box helicase [Helicobacter pylori Rif1]
gi|409896804|gb|AFV44658.1| DEAD/DEAH box helicase [Helicobacter pylori Rif2]
Length = 492
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|421717811|ref|ZP_16157112.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R038b]
gi|407222603|gb|EKE92401.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R038b]
Length = 492
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|421719303|ref|ZP_16158589.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R046Wa]
gi|407222474|gb|EKE92273.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R046Wa]
Length = 492
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|421709650|ref|ZP_16149009.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R018c]
gi|421722902|ref|ZP_16162159.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R056a]
gi|407211095|gb|EKE80964.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R018c]
gi|407225270|gb|EKE95041.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R056a]
Length = 492
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420512248|ref|ZP_15010731.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-2b]
gi|393157311|gb|EJC57572.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-2b]
Length = 492
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420503814|ref|ZP_15002344.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-62]
gi|393155203|gb|EJC55480.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-62]
Length = 489
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 268 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 327
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 328 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 371
>gi|420498815|ref|ZP_14997372.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-26]
gi|393152794|gb|EJC53090.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-26]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420488482|ref|ZP_14987082.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-11]
gi|420522411|ref|ZP_15020835.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-11b]
gi|393109053|gb|EJC09585.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-11]
gi|393129368|gb|EJC29802.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-11b]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420481826|ref|ZP_14980463.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-2]
gi|393099060|gb|EJB99641.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-2]
Length = 492
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420471737|ref|ZP_14970433.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-18]
gi|420476932|ref|ZP_14975594.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-23]
gi|420478711|ref|ZP_14977363.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-34]
gi|393091092|gb|EJB91724.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-18]
gi|393094537|gb|EJB95145.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-23]
gi|393096266|gb|EJB96864.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-34]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420473658|ref|ZP_14972336.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-19]
gi|393090786|gb|EJB91419.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-19]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420461541|ref|ZP_14960331.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-3]
gi|393081521|gb|EJB82241.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-3]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420453086|ref|ZP_14951925.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-8]
gi|393070694|gb|EJB71483.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-8]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420444889|ref|ZP_14943803.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-42]
gi|393063083|gb|EJB63930.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-42]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLVSKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420438295|ref|ZP_14937269.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-29]
gi|420519043|ref|ZP_15017487.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-5b]
gi|393055895|gb|EJB56807.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-29]
gi|393128135|gb|EJC28579.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
H-5b]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420429945|ref|ZP_14928975.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-20]
gi|393048564|gb|EJB49531.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-20]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420423148|ref|ZP_14922221.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-4]
gi|393042428|gb|EJB43437.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-4]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|385223306|ref|YP_005783232.1| ATP dependent RNA helicase [Helicobacter pylori 2017]
gi|385231153|ref|YP_005791072.1| cold-shock DEAD-box protein A [Helicobacter pylori 2018]
gi|420439937|ref|ZP_14938897.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-30]
gi|420463244|ref|ZP_14962022.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-4]
gi|420475132|ref|ZP_14973803.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-21]
gi|325995530|gb|ADZ50935.1| Cold-shock DEAD-box protein A [Helicobacter pylori 2018]
gi|325997128|gb|ADZ49336.1| ATP dependent RNA helicase [Helicobacter pylori 2017]
gi|393057963|gb|EJB58859.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-30]
gi|393080772|gb|EJB81497.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-4]
gi|393093239|gb|EJB93856.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-21]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|385218535|ref|YP_005780010.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Gambia94/24]
gi|317013693|gb|ADU81129.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Gambia94/24]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|254778953|ref|YP_003057058.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
pylori B38]
gi|254000864|emb|CAX28796.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
pylori B38]
Length = 492
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|217033461|ref|ZP_03438891.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10]
gi|216944166|gb|EEC23594.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10]
Length = 492
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDIGGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420443256|ref|ZP_14942184.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-41]
gi|393060763|gb|EJB61632.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-41]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|138893877|ref|YP_001124330.1| DEAD/DEAH box helicase [Geobacillus thermodenitrificans NG80-2]
gi|134265390|gb|ABO65585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
thermodenitrificans NG80-2]
Length = 467
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L ++ Y +HGD+ Q++R SV+ KFK ILVATDVAARGLDI + V
Sbjct: 254 DELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D +++ HRIGRTGRAG GVA T VT ++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPRE 348
>gi|381171471|ref|ZP_09880616.1| ATP-independent RNA helicase DbpA [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380688106|emb|CCG37103.1| ATP-independent RNA helicase DbpA [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 458
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 66/95 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A SL + L LHGDM+Q +R+ V+ +F + C +LVA+DVAARGLD+ + VV
Sbjct: 255 DEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVV 314
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NY+L D +T+ HRIGRT RAG G+A +LV ++
Sbjct: 315 NYELPTDTETYRHRIGRTARAGKHGLALSLVAPRE 349
>gi|300121126|emb|CBK21507.2| unnamed protein product [Blastocystis hominis]
Length = 518
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/133 (40%), Positives = 81/133 (60%), Gaps = 6/133 (4%)
Query: 12 VTDKDKEFAGHLVRNLEG-ANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQ 70
V D DK+ +L+ LE N + L+ + + A+ L LT + + +HGD Q
Sbjct: 371 VEDADKD--SYLLHELENWGNGRI---LIFVETKRKADILQRYLTTQHFQAASIHGDRSQ 425
Query: 71 SERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130
++R ++ FK +ILVATDVAARGLDIP + V+NYD ++I+ + HRIGRTGRAGN
Sbjct: 426 ADREDALSAFKLNRVQILVATDVAARGLDIPDVSLVINYDTPQNIEDYVHRIGRTGRAGN 485
Query: 131 KGVAYTLVTDKDK 143
GVA + + + ++
Sbjct: 486 TGVAISFINENNR 498
>gi|296112376|ref|YP_003626314.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis RH4]
gi|295920070|gb|ADG60421.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
catarrhalis BBH18]
Length = 577
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 70/109 (64%)
Query: 31 NQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVA 90
N ++ A++ A +++ E+LA L + LHGD+ Q +RN +++ K +C +LVA
Sbjct: 255 NPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDLLVA 314
Query: 91 TDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
TDVAARG+DI I V+NYDL R ++ + HRIGR GRAG GVA L +
Sbjct: 315 TDVAARGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCS 363
>gi|289671300|ref|ZP_06492375.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 458
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE 72
T + K AG L+R N E N +++ E+A SL + L LHGDM+Q +
Sbjct: 226 TYRQKAVAGLLLRF----NPESSVVFCNTRKEVD--EVAGSLQEFGFSALALHGDMEQRD 279
Query: 73 RNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG 132
R+ V+ +F + C +LVA+DVAARGLD+ + VVNY+L D +T+ HRIGRT RAG G
Sbjct: 280 RDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHG 339
Query: 133 VAYTLVTDKD 142
+A +LV ++
Sbjct: 340 LALSLVAPRE 349
>gi|407797235|ref|ZP_11144181.1| DEAD/DEAH box helicase [Salimicrobium sp. MJ3]
gi|407018429|gb|EKE31155.1| DEAD/DEAH box helicase [Salimicrobium sp. MJ3]
Length = 491
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 69/97 (71%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A++L V+ + +HGD+ Q +R SV+ KFK ILVATDVAARGLDI + V
Sbjct: 253 DEVADALQVRGFRAEGIHGDLTQGKRMSVLKKFKEGRIEILVATDVAARGLDISDVTHVY 312
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++ HRIGRTGRAG KG + + VT ++KD
Sbjct: 313 NFDIPQDPESYVHRIGRTGRAGRKGESISFVTPREKD 349
>gi|359409801|ref|ZP_09202266.1| DEAD/DEAH box helicase domain protein [Clostridium sp. DL-VIII]
gi|357168685|gb|EHI96859.1| DEAD/DEAH box helicase domain protein [Clostridium sp. DL-VIII]
Length = 525
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 64/95 (67%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL L K Y V +HGDM Q+ R + + KFK +L+ATDVAARG+D+ + V
Sbjct: 257 DELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLSLLIATDVAARGIDVEGVTHVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL +D++++ HRIGRTGRA G AY+LVT KD
Sbjct: 317 NYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKD 351
>gi|297846156|ref|XP_002890959.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297336801|gb|EFH67218.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 539
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Query: 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
++ AE L L + + + +HG+ QSER ++ FK C +LVATDVAARGLDIP +
Sbjct: 378 KVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDV 437
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD--GEL 147
V+NY + + HRIGRTGRAG KGVA+T T ++K GEL
Sbjct: 438 EVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGEL 483
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEE 49
RAG KGVA+T T ++K AG LV L A Q VP L+ + +E
Sbjct: 461 RAGKKGVAHTFFTQQNKGLAGELVNVLREAGQVVPDDLLKFGTHVKKKE 509
>gi|196250549|ref|ZP_03149239.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
gi|196209898|gb|EDY04667.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
Length = 467
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L ++ Y +HGD+ Q++R SV+ KFK ILVATDVAARGLDI + V
Sbjct: 254 DELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D +++ HRIGRTGRAG GVA T VT ++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPRE 348
>gi|207091782|ref|ZP_03239569.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori
HPKX_438_AG0C1]
Length = 492
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDIGGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|150863861|ref|XP_001382482.2| Dead-Box Protein 8, ATP-dependent helicase involved in rRNA
processing [Scheffersomyces stipitis CBS 6054]
gi|158514820|sp|A3LP87.2|DBP8_PICST RecName: Full=ATP-dependent RNA helicase DBP8
gi|149385117|gb|ABN64453.2| Dead-Box Protein 8, ATP-dependent helicase involved in rRNA
processing [Scheffersomyces stipitis CBS 6054]
Length = 445
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 6 GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLH 65
+ Y V KE +L L E A++ + AE L +L E+ V LH
Sbjct: 227 SIKYVFVPSYVKE--AYLNSILRLPQYEKSTAVIFVNRTTTAEVLRRTLRKLEFRVASLH 284
Query: 66 GDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRT 125
+M QSER + + +FK RIL+ATDVA+RGLDIP + VVN+D+ D D HR+GRT
Sbjct: 285 SEMPQSERTNSVQRFKAGAARILIATDVASRGLDIPSVELVVNFDIPADPDDFIHRVGRT 344
Query: 126 GRAGNKGVAYTLVTDKDKD 144
RAG G A T++ +KD D
Sbjct: 345 ARAGRSGDAVTIIAEKDID 363
>gi|420459761|ref|ZP_14958560.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-27]
gi|393076863|gb|EJB77612.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-27]
Length = 492
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420448278|ref|ZP_14947158.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-44]
gi|393065632|gb|EJB66460.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-44]
Length = 491
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|384895629|ref|YP_005769618.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 35A]
gi|315586245|gb|ADU40626.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 35A]
Length = 492
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
Length = 533
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 87/137 (63%), Gaps = 4/137 (2%)
Query: 8 AYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGD 67
AY V ++ K A L R L+ + E+ A++ + +ELA +L + Y LHGD
Sbjct: 218 AYIEVPERQKFEA--LSRLLDMESPEL--AIVFGRTKRRVDELAEALQKRGYSADGLHGD 273
Query: 68 MDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGR 127
+ Q +R++V+ KF+ +LVATDVAARGLD+ + VVN+DL +D +++ HRIGRTGR
Sbjct: 274 LSQHQRDTVMRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGR 333
Query: 128 AGNKGVAYTLVTDKDKD 144
AG +G A++ VT ++ D
Sbjct: 334 AGKEGTAWSFVTPREMD 350
>gi|426402322|ref|YP_007021293.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425858990|gb|AFY00026.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus
str. Tiberius]
Length = 409
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 84/138 (60%), Gaps = 6/138 (4%)
Query: 6 GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLH 65
V + + DK A +L +N +G ++ + ++ AE +A +L E L LH
Sbjct: 223 SVMFVEMDDKRFFLAEYLRQNADGK------FIIFVRTRVRAERVAKALARVEVQSLTLH 276
Query: 66 GDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRT 125
G+ DQ++R V+ F++ +C++L+ATD++ARG+DIP + V+NYDL + HRIGRT
Sbjct: 277 GEKDQTDRAEVMKTFRKGDCKVLIATDLSARGIDIPDVTHVINYDLPEKPANYVHRIGRT 336
Query: 126 GRAGNKGVAYTLVTDKDK 143
GR NKGVA + ++++K
Sbjct: 337 GRGFNKGVAVSFCSNEEK 354
>gi|420530777|ref|ZP_15029152.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-28b]
gi|393138803|gb|EJC39184.1| type III restriction enzyme, res subunit [Helicobacter pylori Hp
P-28b]
Length = 492
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|385248761|ref|YP_005776980.1| ATP-dependent RNA helicase [Helicobacter pylori F57]
gi|317181556|dbj|BAJ59340.1| ATP-dependent RNA helicase [Helicobacter pylori F57]
Length = 492
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420421649|ref|ZP_14920727.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4110]
gi|393038167|gb|EJB39201.1| ATP-dependent RNA helicase [Helicobacter pylori NQ4110]
Length = 492
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLVSKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|374323237|ref|YP_005076366.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
gi|357202246|gb|AET60143.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
Length = 529
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 70/97 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L + Y LHGD+ Q++R++V+ KF+ +LVATDVAARGLD+ + VV
Sbjct: 254 DELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVAARGLDVSGVSHVV 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+DL +D +++ HRIGRTGRAG +G A++ VT ++ D
Sbjct: 314 NFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREID 350
>gi|338811751|ref|ZP_08623956.1| DEAD/DEAH box helicase domain-containing protein [Acetonema longum
DSM 6540]
gi|337276288|gb|EGO64720.1| DEAD/DEAH box helicase domain-containing protein [Acetonema longum
DSM 6540]
Length = 419
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 70/107 (65%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ + A EL +L + Y LHGD+ ++R V+ +F +ILVA+D+AAR
Sbjct: 245 ALVFCHTKQRAIELGTALAQRGYKSDELHGDLSPAKRTQVMKRFSDATLQILVASDIAAR 304
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
GLDI I V NYD+ RD+DT+ HRIGRTGRAG G+A TLVT +++
Sbjct: 305 GLDIEGITHVFNYDVPRDVDTYIHRIGRTGRAGETGIAVTLVTPQEQ 351
>gi|384550878|ref|YP_005740130.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus JKD6159]
gi|302333727|gb|ADL23920.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus JKD6159]
Length = 506
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>gi|407409670|gb|EKF32403.1| ATP-dependent DEAD/H RNA helicase, putative, partial [Trypanosoma
cruzi marinkellei]
Length = 591
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/114 (43%), Positives = 71/114 (62%)
Query: 30 ANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILV 89
AN L+ + A++L L YD + +HGD +Q +R ++ +F++ LV
Sbjct: 351 ANHRNQRVLIFCKTKRTADDLEWQLKRWGYDAMAIHGDKEQRQREFILERFRKDPRLCLV 410
Query: 90 ATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
ATDVAARGLDI + TV+NYD ID + HRIGRTGRAG KG A+TL+T +++
Sbjct: 411 ATDVAARGLDIKELETVINYDFPMQIDDYVHRIGRTGRAGAKGEAFTLITKREQ 464
>gi|373859820|ref|ZP_09602543.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372450463|gb|EHP23951.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 487
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 68/96 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L ++ Y +HGD+ Q++R SV+ KFK +LVATDVAARGLDI + V
Sbjct: 254 DELAEALNLRGYMAEGIHGDLSQAKRLSVLKKFKEGSIDVLVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
N+D+ +D +++ HRIGRTGRAG GVA T VT ++K
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKTGVALTFVTHREK 349
>gi|150390823|ref|YP_001320872.1| DEAD/DEAH box helicase [Alkaliphilus metalliredigens QYMF]
gi|149950685|gb|ABR49213.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 529
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 66/96 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +EL L + Y +HGD+ Q++R+ V+ KF+ + +LVATDVAARG+D+ +
Sbjct: 255 SVDELTEKLQNRGYSAAAIHGDLKQTQRDRVMKKFRNRTIDLLVATDVAARGIDVNDVEM 314
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141
V+NYD+ D + + HRIGRTGRAG +GVAYTL T K
Sbjct: 315 VMNYDIPEDFEYYVHRIGRTGRAGKEGVAYTLATGK 350
>gi|289665687|ref|ZP_06487268.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
vasculorum NCPPB 702]
Length = 458
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE 72
T + K AG L+R N E N +++ E+A SL + L LHGDM+Q +
Sbjct: 226 TYRQKAVAGLLLRF----NPESSVVFCNTRKEVD--EVAGSLQEFGFSALALHGDMEQRD 279
Query: 73 RNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG 132
R+ V+ +F + C +LVA+DVAARGLD+ + VVNY+L D +T+ HRIGRT RAG G
Sbjct: 280 RDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHG 339
Query: 133 VAYTLVTDKD 142
+A +LV ++
Sbjct: 340 LALSLVAPRE 349
>gi|377556172|ref|ZP_09785893.1| ATP-dependent RNA helicase [Lactobacillus gastricus PS3]
gi|376168726|gb|EHS87461.1| ATP-dependent RNA helicase [Lactobacillus gastricus PS3]
Length = 498
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 66/97 (68%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ L + Y+ +HGD+ Q R+ ++ +FK E ILVATDVAARGLDI + V
Sbjct: 253 DELSRGLIARGYNAAGIHGDLTQDRRSKIMKRFKNGELDILVATDVAARGLDISGVTHVY 312
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
NYD+ +D +++ HRIGRTGRAGN GV+ T VT + D
Sbjct: 313 NYDIPQDPESYVHRIGRTGRAGNHGVSLTFVTPNEMD 349
>gi|357156241|ref|XP_003577389.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like
[Brachypodium distachyon]
Length = 609
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/96 (51%), Positives = 61/96 (63%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+ L N L + +HGD +Q ER + FK + ILVATDVAARGLDIPH+ V
Sbjct: 415 ADSLENWLCTNGFPATSIHGDRNQQEREYALRSFKSGQTPILVATDVAARGLDIPHVAHV 474
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VN+DL DID + HRIGRTGRAG G+A +D +
Sbjct: 475 VNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFSDNN 510
>gi|297807481|ref|XP_002871624.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297317461|gb|EFH47883.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 713
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/95 (49%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++LA +LT + + +HGD Q+ER+ V+ +F+ +LVATDVAARGLD+ IR VV
Sbjct: 488 DQLARNLT-RTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVV 546
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD ++ + HRIGRTGRAG G+AYT D+D
Sbjct: 547 NYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQD 581
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG G+AYT D+D + A L++ LEGANQ+VPP + +A +
Sbjct: 566 RAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMATR 609
>gi|420501086|ref|ZP_14999630.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-30]
gi|393149892|gb|EJC50200.1| ATP-dependent RNA helicase [Helicobacter pylori Hp P-30]
Length = 492
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|258422918|ref|ZP_05685818.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
gi|417891554|ref|ZP_12535616.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21200]
gi|418283345|ref|ZP_12896092.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21202]
gi|418307556|ref|ZP_12919253.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21194]
gi|418560738|ref|ZP_13125247.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21252]
gi|418889888|ref|ZP_13444016.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1524]
gi|418994781|ref|ZP_13542414.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG290]
gi|257846942|gb|EEV70956.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
gi|341851971|gb|EGS92873.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21200]
gi|365167681|gb|EHM59059.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21202]
gi|365245536|gb|EHM86169.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21194]
gi|371971160|gb|EHO88567.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21252]
gi|377741714|gb|EHT65700.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG290]
gi|377751205|gb|EHT75138.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1524]
Length = 506
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>gi|420428271|ref|ZP_14927306.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-17]
gi|393045930|gb|EJB46910.1| ATP-dependent RNA helicase [Helicobacter pylori Hp A-17]
Length = 491
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNAESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|319651117|ref|ZP_08005250.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
gi|317397171|gb|EFV77876.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
Length = 463
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+ L + Y +HGD+ Q++R+ VI +FK Q I+VATDVAARGLDI + V
Sbjct: 234 DEVVEGLIKRGYSAEGIHGDIPQAKRDQVIRRFKEQTIDIMVATDVAARGLDISGVSHVY 293
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++ HRIGRTGRAGNKG+A T V+ ++ D
Sbjct: 294 NFDIPQDPESYVHRIGRTGRAGNKGLAITFVSPREID 330
>gi|307729303|ref|YP_003906527.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307583838|gb|ADN57236.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 530
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 75/117 (64%), Gaps = 5/117 (4%)
Query: 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
HL+R+ G +Q A++ A +++A++LA L ++ LHGD+ Q RN I +
Sbjct: 305 HLLRD-AGLDQ----AIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTIRALR 359
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+ R+LVATDVAARG+DIP I V NYDL + + + HRIGRTGRAG G+A +LV
Sbjct: 360 ERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSLV 416
>gi|282917430|ref|ZP_06325183.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus D139]
gi|282318632|gb|EFB48989.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus D139]
Length = 506
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>gi|260945072|ref|XP_002616834.1| hypothetical protein CLUG_04075 [Clavispora lusitaniae ATCC 42720]
gi|238850483|gb|EEQ39947.1| hypothetical protein CLUG_04075 [Clavispora lusitaniae ATCC 42720]
Length = 559
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 2/134 (1%)
Query: 12 VTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEY-DVLLLHGDMDQ 70
V D D++ LVR L+ ++ ++ + E+LA L K + V ++HG Q
Sbjct: 401 VQDFDEKRFASLVRILKAQGHDMS-VIIFANFKRTVEQLAEELEGKGFPKVAVVHGSKTQ 459
Query: 71 SERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130
R I F+ + IL+ATDVAARGLD+PH+ VVNY +++ + + HRIGRTGRAG
Sbjct: 460 EAREKAIESFRAKRANILIATDVAARGLDVPHVSLVVNYHMSKKFEEYIHRIGRTGRAGQ 519
Query: 131 KGVAYTLVTDKDKD 144
KG +YT V DKD
Sbjct: 520 KGASYTFVDGGDKD 533
>gi|393241453|gb|EJD48975.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 531
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 79/138 (57%)
Query: 2 AGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDV 61
A N + + D E G L+++LE + E L+ + + A+++ L +
Sbjct: 317 AANHNIKQIVEVCTDFEKRGKLIKHLEQISNENAKVLIFVGTKRVADDITKYLRQDGWPA 376
Query: 62 LLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHR 121
L +HGD +Q ER+ V+ +FK IL+ATDVA+RGLD+ + V+NYD + + + HR
Sbjct: 377 LAIHGDKEQRERDWVLGEFKASRSPILIATDVASRGLDVKDVGYVINYDFPNNCEDYIHR 436
Query: 122 IGRTGRAGNKGVAYTLVT 139
IGRTGRAG KG AYT T
Sbjct: 437 IGRTGRAGMKGTAYTYFT 454
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAM 43
RAG KG AYT T + + A L+ L A QE+PP L + M
Sbjct: 442 RAGMKGTAYTYFTTDNSKAARELLGILREAKQEIPPQLEEMGM 484
>gi|341896005|gb|EGT51940.1| hypothetical protein CAEBREN_19695 [Caenorhabditis brenneri]
Length = 402
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 66/96 (68%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
++L +T K++ V LHGDMDQ+ER++++ +F+ R+L+ TD+ ARG+D+ + V
Sbjct: 281 VDQLTEQMTAKQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLV 340
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+NYDL + + + HRIGR+GR G KGVA VT+ D
Sbjct: 341 INYDLPSNRENYIHRIGRSGRFGRKGVAINFVTEND 376
>gi|256088557|ref|XP_002580397.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 1500
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 70/116 (60%)
Query: 24 VRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ 83
V L G QE L+ + Q +A+EL L Y L LHG +DQ +R+SVI FKR
Sbjct: 1043 VLELLGIYQEEGSVLVFVEKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRG 1102
Query: 84 ECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
R+L+AT VAARGLD+ + V+NYD + + HR GRTGRAG KG AYT +T
Sbjct: 1103 NIRLLIATSVAARGLDVTDLLLVINYDCPNHYEDYVHRCGRTGRAGRKGFAYTFLT 1158
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNL 41
RAG KG AYT +T + AG +VR + + Q+ P LMN+
Sbjct: 1146 RAGRKGFAYTFLTPDQERSAGDVVRAFKQSGQKPPEELMNM 1186
>gi|407713964|ref|YP_006834529.1| DEAD/DEAH box helicase [Burkholderia phenoliruptrix BR3459a]
gi|407236148|gb|AFT86347.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phenoliruptrix BR3459a]
Length = 526
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 75/117 (64%), Gaps = 5/117 (4%)
Query: 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
HL+R+ G +Q A++ A +++A++LA L ++ LHGD+ Q RN I +
Sbjct: 294 HLLRD-AGLDQ----AIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTIRALR 348
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+ R+LVATDVAARG+DIP I V NYDL + + + HRIGRTGRAG G+A +LV
Sbjct: 349 ERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSLV 405
>gi|418595150|ref|ZP_13158775.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21342]
gi|374402283|gb|EHQ73315.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21342]
Length = 506
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>gi|134113286|ref|XP_774667.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257311|gb|EAL20020.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 559
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 11 LVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQ 70
+ TD DK L+ +LE +QE L+ +A + A++L L + + L +HGD Q
Sbjct: 354 VCTDFDKR--SKLLSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQ 411
Query: 71 SERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130
+ER+ V+ +FK I++ATDVA+RGLD+ I V+NYD + + + HRIGRTGRAG
Sbjct: 412 AERDWVLAEFKSGRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGR 471
Query: 131 KGVAYTLVT 139
KG +YT T
Sbjct: 472 KGTSYTYFT 480
>gi|134113284|ref|XP_774668.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257312|gb|EAL20021.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 546
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 11 LVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQ 70
+ TD DK L+ +LE +QE L+ +A + A++L L + + L +HGD Q
Sbjct: 341 VCTDFDKR--SKLLSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQ 398
Query: 71 SERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130
+ER+ V+ +FK I++ATDVA+RGLD+ I V+NYD + + + HRIGRTGRAG
Sbjct: 399 AERDWVLAEFKSGRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGR 458
Query: 131 KGVAYTLVT 139
KG +YT T
Sbjct: 459 KGTSYTYFT 467
>gi|339627938|ref|YP_004719581.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|379007571|ref|YP_005257022.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
gi|339285727|gb|AEJ39838.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|361053833|gb|AEW05350.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
Length = 525
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 65/95 (68%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL L + Y LHGD++Q +RN V+ +FK ILVATDVAARGLDI ++ V+
Sbjct: 258 DELTEGLQARGYTAEALHGDLNQVQRNRVMKRFKEGGSEILVATDVAARGLDIDNVTHVI 317
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL +D +++ HRIGRTGRAG G A +L+ K+
Sbjct: 318 NYDLPQDTESYVHRIGRTGRAGRTGTAISLINPKE 352
>gi|82751683|ref|YP_417424.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
gi|123548216|sp|Q2YUH3.1|Y1965_STAAB RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAB1965c
gi|82657214|emb|CAI81654.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
Length = 506
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>gi|49484306|ref|YP_041530.1| helicase [Staphylococcus aureus subsp. aureus MRSA252]
gi|282904748|ref|ZP_06312622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus C160]
gi|282906426|ref|ZP_06314277.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282920258|ref|ZP_06327982.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
aureus C427]
gi|283958860|ref|ZP_06376305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus A017934/97]
gi|295428668|ref|ZP_06821294.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|415684901|ref|ZP_11449930.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
gi|417887143|ref|ZP_12531279.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21195]
gi|418565159|ref|ZP_13129574.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21264]
gi|418582899|ref|ZP_13146972.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1605]
gi|418600951|ref|ZP_13164400.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21345]
gi|418892594|ref|ZP_13446705.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1176]
gi|418898667|ref|ZP_13452734.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|418901468|ref|ZP_13455519.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1214]
gi|418909906|ref|ZP_13463896.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG149]
gi|418918125|ref|ZP_13472079.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1267]
gi|418923794|ref|ZP_13477706.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1233]
gi|418983027|ref|ZP_13530731.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1242]
gi|418986647|ref|ZP_13534328.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1500]
gi|81650664|sp|Q6GEZ3.1|Y2168_STAAR RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAR2168
gi|49242435|emb|CAG41149.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252]
gi|282316118|gb|EFB46499.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
aureus C427]
gi|282330376|gb|EFB59894.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282594781|gb|EFB99758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus C160]
gi|283789578|gb|EFC28401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus A017934/97]
gi|295127338|gb|EFG56978.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|315193240|gb|EFU23638.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
gi|341858415|gb|EGS99208.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21195]
gi|371974783|gb|EHO92099.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21264]
gi|374400368|gb|EHQ71483.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21345]
gi|377700704|gb|EHT25038.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1214]
gi|377702654|gb|EHT26974.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1242]
gi|377702762|gb|EHT27081.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1500]
gi|377709133|gb|EHT33404.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1605]
gi|377729734|gb|EHT53820.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1176]
gi|377732973|gb|EHT57022.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1233]
gi|377748968|gb|EHT72922.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1267]
gi|377749869|gb|EHT73808.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG149]
gi|377758226|gb|EHT82112.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC341D]
Length = 506
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>gi|257426220|ref|ZP_05602635.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257428878|ref|ZP_05605272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257431487|ref|ZP_05607860.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus 68-397]
gi|257434197|ref|ZP_05610547.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus E1410]
gi|257437110|ref|ZP_05613150.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus M876]
gi|282914927|ref|ZP_06322707.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus M899]
gi|282925469|ref|ZP_06333123.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus C101]
gi|293508999|ref|ZP_06667786.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510911|ref|ZP_06669610.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus M809]
gi|293547513|ref|ZP_06672188.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus M1015]
gi|257270925|gb|EEV03098.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257274220|gb|EEV05737.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257277728|gb|EEV08398.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus 68-397]
gi|257280836|gb|EEV10981.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus E1410]
gi|257283503|gb|EEV13630.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus M876]
gi|282312870|gb|EFB43271.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus C101]
gi|282321130|gb|EFB51461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus M899]
gi|290919633|gb|EFD96706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus M1015]
gi|291094703|gb|EFE24975.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466196|gb|EFF08723.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus M809]
Length = 506
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>gi|157138330|ref|XP_001657248.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108869525|gb|EAT33750.1| AAEL013985-PA [Aedes aegypti]
Length = 1029
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ +V ++D +F L L G QE+ ++ + Q NA+ L L Y L LHG +
Sbjct: 592 HVVVLEEDAKFFKLL--ELLGLYQELGSIIVFVDKQENADILLKDLMKASYPCLSLHGGI 649
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
DQ +R+S I FK+ ++L+AT VAARGLD+ + VVNYD + + HR GRTGRA
Sbjct: 650 DQFDRDSTIIDFKQGRVKLLIATSVAARGLDVKQLILVVNYDCPNHYEDYVHRCGRTGRA 709
Query: 129 GNKGVAYTLVT 139
GNKG A+T +T
Sbjct: 710 GNKGFAWTFLT 720
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNL 41
RAGNKG A+T +T + ++G ++R LE + VP L +L
Sbjct: 708 RAGNKGFAWTFLTHEQGRYSGDIIRALELSGGTVPDDLRSL 748
>gi|418915213|ref|ZP_13469180.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|377754656|gb|EHT78563.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC340D]
Length = 506
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>gi|254482117|ref|ZP_05095359.1| DbpA RNA binding domain family protein [marine gamma
proteobacterium HTCC2148]
gi|214037807|gb|EEB78472.1| DbpA RNA binding domain family protein [marine gamma
proteobacterium HTCC2148]
Length = 459
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 62/82 (75%)
Query: 62 LLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHR 121
L LHGDM+Q +R+ V+ +F++Q C +LVATDVAARGLDI + VVN++L R+ + + HR
Sbjct: 270 LALHGDMEQRDRDQVLIQFRQQSCSVLVATDVAARGLDIDDLPVVVNFELPRETEVYVHR 329
Query: 122 IGRTGRAGNKGVAYTLVTDKDK 143
+GRTGRAG G+A +L D ++
Sbjct: 330 VGRTGRAGKAGLALSLFADSEQ 351
>gi|171059675|ref|YP_001792024.1| DEAD/DEAH box helicase [Leptothrix cholodnii SP-6]
gi|170777120|gb|ACB35259.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
Length = 477
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 63/94 (67%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+L L + Y L LHGD++Q +R+ V+ +F Q C +LVATD+AARGLDI +
Sbjct: 270 QCRDLVQVLRAQGYSALELHGDLEQRDRDQVLIQFANQSCSVLVATDIAARGLDISQLGA 329
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
V+N ++ DI THTHRIGRTGRA +G A++L +
Sbjct: 330 VINVEITPDIATHTHRIGRTGRADEEGWAFSLAS 363
>gi|15925071|ref|NP_372605.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927656|ref|NP_375189.1| hypothetical protein SA1885 [Staphylococcus aureus subsp. aureus
N315]
gi|21283733|ref|NP_646821.1| hypothetical protein MW2004 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486874|ref|YP_044095.1| helicase [Staphylococcus aureus subsp. aureus MSSA476]
gi|57650754|ref|YP_186888.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus COL]
gi|87161548|ref|YP_494683.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195982|ref|YP_500795.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148268533|ref|YP_001247476.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus JH9]
gi|150394597|ref|YP_001317272.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus JH1]
gi|151222197|ref|YP_001333019.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus str. Newman]
gi|156980397|ref|YP_001442656.1| hypothetical protein SAHV_2066 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161510293|ref|YP_001575952.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253316240|ref|ZP_04839453.1| putative helicase [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006870|ref|ZP_05145471.2| putative helicase [Staphylococcus aureus subsp. aureus Mu50-omega]
gi|257793840|ref|ZP_05642819.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
gi|258407008|ref|ZP_05680158.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
gi|258422029|ref|ZP_05684946.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
gi|258433601|ref|ZP_05688674.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
gi|258440496|ref|ZP_05690666.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|258445704|ref|ZP_05693882.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
gi|258450158|ref|ZP_05698253.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
gi|258453208|ref|ZP_05701199.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus A5948]
gi|258453387|ref|ZP_05701369.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
gi|262049250|ref|ZP_06022125.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
gi|262052494|ref|ZP_06024692.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
gi|269203717|ref|YP_003282986.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
aureus ED98]
gi|282895275|ref|ZP_06303488.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
gi|282911647|ref|ZP_06319446.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282923070|ref|ZP_06330755.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
gi|282929553|ref|ZP_06336950.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
gi|284025116|ref|ZP_06379514.1| putative helicase [Staphylococcus aureus subsp. aureus 132]
gi|294850566|ref|ZP_06791293.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
gi|295407012|ref|ZP_06816814.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
gi|296275711|ref|ZP_06858218.1| putative helicase [Staphylococcus aureus subsp. aureus MR1]
gi|297246745|ref|ZP_06930562.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
gi|379015208|ref|YP_005291444.1| helicase [Staphylococcus aureus subsp. aureus VC40]
gi|379021757|ref|YP_005298419.1| cold-shock DEAD-box protein A [Staphylococcus aureus subsp. aureus
M013]
gi|384865266|ref|YP_005750625.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|384870631|ref|YP_005753345.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
T0131]
gi|385782321|ref|YP_005758492.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
11819-97]
gi|386831664|ref|YP_006238318.1| putative helicase [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|387143797|ref|YP_005732191.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
gi|387151207|ref|YP_005742771.1| Cold-shock DEAD-box protein A [Staphylococcus aureus 04-02981]
gi|387781060|ref|YP_005755858.1| putative helicase [Staphylococcus aureus subsp. aureus LGA251]
gi|415688401|ref|ZP_11452116.1| putative helicase [Staphylococcus aureus subsp. aureus CGS01]
gi|415694064|ref|ZP_11455644.1| putative helicase [Staphylococcus aureus subsp. aureus CGS03]
gi|416841693|ref|ZP_11904548.1| ATP-dependent RNA helicase [Staphylococcus aureus O11]
gi|416847139|ref|ZP_11906948.1| ATP-dependent RNA helicase [Staphylococcus aureus O46]
gi|417650388|ref|ZP_12300160.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21189]
gi|417651619|ref|ZP_12301379.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21172]
gi|417655380|ref|ZP_12305093.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21193]
gi|417799422|ref|ZP_12446562.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21310]
gi|417803227|ref|ZP_12450272.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21318]
gi|417892680|ref|ZP_12536727.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21201]
gi|417897497|ref|ZP_12541428.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21235]
gi|417900259|ref|ZP_12544149.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21266]
gi|417905571|ref|ZP_12549379.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21269]
gi|418277254|ref|ZP_12891868.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21178]
gi|418286656|ref|ZP_12899297.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21209]
gi|418313951|ref|ZP_12925433.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21334]
gi|418319265|ref|ZP_12930649.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21232]
gi|418320043|ref|ZP_12931407.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus VCU006]
gi|418425251|ref|ZP_12998345.1| hypothetical protein MQA_01557 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418428143|ref|ZP_13001132.1| hypothetical protein MQC_01722 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418431028|ref|ZP_13003930.1| hypothetical protein MQE_02589 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418434933|ref|ZP_13006785.1| hypothetical protein MQG_02595 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418437701|ref|ZP_13009479.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS5]
gi|418440630|ref|ZP_13012317.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS6]
gi|418443605|ref|ZP_13015192.1| hypothetical protein MQM_02704 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418446602|ref|ZP_13018064.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS8]
gi|418449687|ref|ZP_13021059.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS9]
gi|418452527|ref|ZP_13023850.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS10]
gi|418455483|ref|ZP_13026734.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS11a]
gi|418458359|ref|ZP_13029550.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS11b]
gi|418562003|ref|ZP_13126472.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21262]
gi|418567928|ref|ZP_13132287.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21272]
gi|418571317|ref|ZP_13135553.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21283]
gi|418572707|ref|ZP_13136913.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21333]
gi|418580004|ref|ZP_13144094.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1114]
gi|418599110|ref|ZP_13162606.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21343]
gi|418638750|ref|ZP_13201033.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-3]
gi|418641112|ref|ZP_13203326.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-24]
gi|418645440|ref|ZP_13207562.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-55]
gi|418646512|ref|ZP_13208614.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-88]
gi|418649117|ref|ZP_13211147.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-91]
gi|418652298|ref|ZP_13214266.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-99]
gi|418655867|ref|ZP_13217699.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-105]
gi|418658669|ref|ZP_13220382.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-111]
gi|418661301|ref|ZP_13222893.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-122]
gi|418871169|ref|ZP_13425556.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-125]
gi|418875945|ref|ZP_13430194.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC93]
gi|418878939|ref|ZP_13433170.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1165]
gi|418881777|ref|ZP_13435989.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1213]
gi|418884407|ref|ZP_13438597.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1769]
gi|418887111|ref|ZP_13441254.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1150]
gi|418895677|ref|ZP_13449768.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1057]
gi|418904421|ref|ZP_13458458.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1770]
gi|418907013|ref|ZP_13461034.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|418912631|ref|ZP_13466608.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG547]
gi|418920910|ref|ZP_13474838.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC348]
gi|418926494|ref|ZP_13480390.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG2018]
gi|418929425|ref|ZP_13483309.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1612]
gi|418932399|ref|ZP_13486227.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1750]
gi|418935062|ref|ZP_13488879.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC128]
gi|418947874|ref|ZP_13500213.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-157]
gi|418950869|ref|ZP_13503007.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-160]
gi|418955800|ref|ZP_13507736.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-189]
gi|418989148|ref|ZP_13536816.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1835]
gi|418991998|ref|ZP_13539656.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1096]
gi|419774795|ref|ZP_14300752.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus CO-23]
gi|419783577|ref|ZP_14309361.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-M]
gi|421150952|ref|ZP_15610603.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|424786070|ref|ZP_18212863.1| Cold-shock DEAD-box protein A [Staphylococcus aureus CN79]
gi|440707003|ref|ZP_20887718.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21282]
gi|440735442|ref|ZP_20915048.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus DSM 20231]
gi|443637665|ref|ZP_21121736.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21236]
gi|443640144|ref|ZP_21124139.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21196]
gi|448742179|ref|ZP_21724131.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus
KT/314250]
gi|448743158|ref|ZP_21725070.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus KT/Y21]
gi|81648913|sp|Q6G7M9.1|Y1985_STAAS RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAS1985
gi|81694077|sp|Q5HEB9.1|Y2072_STAAC RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
SACOL2072
gi|81704263|sp|Q7A0D2.1|Y2004_STAAW RecName: Full=Probable DEAD-box ATP-dependent RNA helicase MW2004
gi|81705333|sp|Q7A4G0.1|Y1885_STAAN RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SA1885
gi|81781186|sp|Q99SH6.1|Y2081_STAAM RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAV2081
gi|122538977|sp|Q2FWH5.1|Y2316_STAA8 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
SAOUHSC_02316
gi|123484971|sp|Q2FF45.1|Y2037_STAA3 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
SAUSA300_2037
gi|13701876|dbj|BAB43168.1| SA1885 [Staphylococcus aureus subsp. aureus N315]
gi|14247854|dbj|BAB58243.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
Mu50]
gi|21205175|dbj|BAB95869.1| MW2004 [Staphylococcus aureus subsp. aureus MW2]
gi|49245317|emb|CAG43792.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
gi|57284940|gb|AAW37034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
aureus subsp. aureus COL]
gi|87127522|gb|ABD22036.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203540|gb|ABD31350.1| ATP-dependent RNA helicase, DEAD box family, putative
[Staphylococcus aureus subsp. aureus NCTC 8325]
gi|147741602|gb|ABQ49900.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
aureus JH9]
gi|149947049|gb|ABR52985.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
aureus JH1]
gi|150374997|dbj|BAF68257.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus str. Newman]
gi|156722532|dbj|BAF78949.1| hypothetical protein SAHV_2066 [Staphylococcus aureus subsp. aureus
Mu3]
gi|160369102|gb|ABX30073.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257787812|gb|EEV26152.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
gi|257841341|gb|EEV65785.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
gi|257841929|gb|EEV66361.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
gi|257849332|gb|EEV73311.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
gi|257852565|gb|EEV76483.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|257855543|gb|EEV78480.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
gi|257856632|gb|EEV79538.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
gi|257859154|gb|EEV82011.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus A5948]
gi|257864368|gb|EEV87114.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
gi|259159615|gb|EEW44661.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
gi|259162615|gb|EEW47182.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
gi|262076007|gb|ACY11980.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
aureus ED98]
gi|269941681|emb|CBI50088.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
gi|282324412|gb|EFB54725.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282589032|gb|EFB94136.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
gi|282593261|gb|EFB98258.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
gi|282762348|gb|EFC02495.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
gi|285817746|gb|ADC38233.1| Cold-shock DEAD-box protein A [Staphylococcus aureus 04-02981]
gi|294822586|gb|EFG39028.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
gi|294968037|gb|EFG44064.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
gi|297176405|gb|EFH35677.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
gi|312830433|emb|CBX35275.1| DEAD/DEAH box helicase family protein [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315128752|gb|EFT84752.1| putative helicase [Staphylococcus aureus subsp. aureus CGS03]
gi|315196987|gb|EFU27329.1| putative helicase [Staphylococcus aureus subsp. aureus CGS01]
gi|323439203|gb|EGA96930.1| ATP-dependent RNA helicase [Staphylococcus aureus O11]
gi|323442419|gb|EGB00048.1| ATP-dependent RNA helicase [Staphylococcus aureus O46]
gi|329314766|gb|AEB89179.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
T0131]
gi|329724041|gb|EGG60565.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21189]
gi|329726361|gb|EGG62829.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21172]
gi|329729332|gb|EGG65740.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21193]
gi|334272865|gb|EGL91220.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21318]
gi|334273753|gb|EGL92092.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21310]
gi|341839595|gb|EGS81175.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21235]
gi|341843034|gb|EGS84266.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21269]
gi|341848939|gb|EGS90094.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21266]
gi|341857246|gb|EGS98062.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21201]
gi|344178162|emb|CCC88648.1| putative helicase [Staphylococcus aureus subsp. aureus LGA251]
gi|359831066|gb|AEV79044.1| Cold-shock DEAD-box protein A [Staphylococcus aureus subsp. aureus
M013]
gi|364523310|gb|AEW66060.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 11819-97]
gi|365165869|gb|EHM57617.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21209]
gi|365173732|gb|EHM64218.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21178]
gi|365228359|gb|EHM69543.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus VCU006]
gi|365234565|gb|EHM75495.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21334]
gi|365241002|gb|EHM81759.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21232]
gi|371974841|gb|EHO92156.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21262]
gi|371980485|gb|EHO97691.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21283]
gi|371981117|gb|EHO98304.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21272]
gi|371984051|gb|EHP01178.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21333]
gi|374363905|gb|AEZ38010.1| helicase [Staphylococcus aureus subsp. aureus VC40]
gi|374398160|gb|EHQ69350.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21343]
gi|375019875|gb|EHS13425.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-24]
gi|375020751|gb|EHS14267.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-3]
gi|375022082|gb|EHS15574.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-99]
gi|375022959|gb|EHS16425.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-55]
gi|375030376|gb|EHS23693.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-91]
gi|375032669|gb|EHS25895.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-88]
gi|375035253|gb|EHS28383.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-105]
gi|375037800|gb|EHS30808.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-111]
gi|375039092|gb|EHS32036.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-122]
gi|375369103|gb|EHS72994.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-125]
gi|375370525|gb|EHS74330.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-189]
gi|375374056|gb|EHS77700.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-157]
gi|375375282|gb|EHS78872.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-160]
gi|377692852|gb|EHT17231.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1165]
gi|377692975|gb|EHT17352.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1057]
gi|377693343|gb|EHT17715.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1114]
gi|377711481|gb|EHT35712.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1750]
gi|377713240|gb|EHT37449.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1769]
gi|377715676|gb|EHT39863.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1835]
gi|377721138|gb|EHT45279.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG547]
gi|377721406|gb|EHT45538.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1096]
gi|377723840|gb|EHT47961.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1150]
gi|377729773|gb|EHT53856.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1213]
gi|377736617|gb|EHT60632.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1612]
gi|377739857|gb|EHT63857.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG1770]
gi|377741345|gb|EHT65334.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIG2018]
gi|377761469|gb|EHT85340.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|377762455|gb|EHT86318.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC348]
gi|377768371|gb|EHT92154.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC93]
gi|377769295|gb|EHT93069.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus CIGC128]
gi|383364874|gb|EID42179.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus IS-M]
gi|383971463|gb|EID87538.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus CO-23]
gi|385197056|emb|CCG16701.1| putative helicase [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|387716292|gb|EIK04351.1| hypothetical protein MQC_01722 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387716987|gb|EIK05022.1| hypothetical protein MQE_02589 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387717047|gb|EIK05073.1| hypothetical protein MQA_01557 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387723829|gb|EIK11540.1| hypothetical protein MQG_02595 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387725446|gb|EIK13060.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS5]
gi|387728589|gb|EIK16073.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS6]
gi|387733388|gb|EIK20572.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS8]
gi|387734873|gb|EIK22022.1| hypothetical protein MQM_02704 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387735068|gb|EIK22207.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS9]
gi|387742473|gb|EIK29288.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS10]
gi|387743010|gb|EIK29809.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS11a]
gi|387744154|gb|EIK30925.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus VRS11b]
gi|394329036|gb|EJE55163.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|421955596|gb|EKU07932.1| Cold-shock DEAD-box protein A [Staphylococcus aureus CN79]
gi|436430653|gb|ELP28012.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus DSM 20231]
gi|436506489|gb|ELP42284.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21282]
gi|443405200|gb|ELS63809.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21236]
gi|443405702|gb|ELS64297.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21196]
gi|445547050|gb|ELY15324.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus
KT/314250]
gi|445563511|gb|ELY19670.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus KT/Y21]
Length = 506
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>gi|58268226|ref|XP_571269.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21]
gi|338818050|sp|P0CQ77.1|DBP2_CRYNB RecName: Full=ATP-dependent RNA helicase DBP2-A
gi|338818051|sp|P0CQ76.1|DBP2_CRYNJ RecName: Full=ATP-dependent RNA helicase DBP2-A
gi|57227504|gb|AAW43962.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 540
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 11 LVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQ 70
+ TD DK L+ +LE +QE L+ +A + A++L L + + L +HGD Q
Sbjct: 335 VCTDFDKR--SKLLSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQ 392
Query: 71 SERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130
+ER+ V+ +FK I++ATDVA+RGLD+ I V+NYD + + + HRIGRTGRAG
Sbjct: 393 AERDWVLAEFKSGRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGR 452
Query: 131 KGVAYTLVT 139
KG +YT T
Sbjct: 453 KGTSYTYFT 461
>gi|58268224|ref|XP_571268.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21]
gi|57227503|gb|AAW43961.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 527
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 11 LVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQ 70
+ TD DK L+ +LE +QE L+ +A + A++L L + + L +HGD Q
Sbjct: 322 VCTDFDKR--SKLLSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQ 379
Query: 71 SERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130
+ER+ V+ +FK I++ATDVA+RGLD+ I V+NYD + + + HRIGRTGRAG
Sbjct: 380 AERDWVLAEFKSGRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGR 439
Query: 131 KGVAYTLVT 139
KG +YT T
Sbjct: 440 KGTSYTYFT 448
>gi|417898362|ref|ZP_12542283.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21259]
gi|341848722|gb|EGS89882.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21259]
Length = 506
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>gi|256088555|ref|XP_002580396.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 1544
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 70/116 (60%)
Query: 24 VRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ 83
V L G QE L+ + Q +A+EL L Y L LHG +DQ +R+SVI FKR
Sbjct: 1087 VLELLGIYQEEGSVLVFVEKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRG 1146
Query: 84 ECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
R+L+AT VAARGLD+ + V+NYD + + HR GRTGRAG KG AYT +T
Sbjct: 1147 NIRLLIATSVAARGLDVTDLLLVINYDCPNHYEDYVHRCGRTGRAGRKGFAYTFLT 1202
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNL 41
RAG KG AYT +T + AG +VR + + Q+ P LMN+
Sbjct: 1190 RAGRKGFAYTFLTPDQERSAGDVVRAFKQSGQKPPEELMNM 1230
>gi|418315814|ref|ZP_12927266.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21340]
gi|365242402|gb|EHM83109.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus 21340]
Length = 506
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>gi|387603359|ref|YP_005734880.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Staphylococcus aureus subsp. aureus ST398]
gi|404479359|ref|YP_006710789.1| helicase [Staphylococcus aureus 08BA02176]
gi|418310467|ref|ZP_12922007.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21331]
gi|283471297|emb|CAQ50508.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Staphylococcus aureus subsp. aureus ST398]
gi|365236654|gb|EHM77538.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21331]
gi|404440848|gb|AFR74041.1| putative helicase [Staphylococcus aureus 08BA02176]
Length = 506
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>gi|294880401|ref|XP_002768997.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
50983]
gi|239872070|gb|EER01715.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
50983]
Length = 689
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/121 (47%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 23 LVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82
L R LE +E L+ + + A+E+ N L Y +HGD Q ER + FK
Sbjct: 450 LYRVLEEQTEE-GLTLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWEREEALKAFKS 508
Query: 83 QECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
E ILVATDVAARGLDI H+ V+NYDL +ID + HRIGRTGRAGN G A V +
Sbjct: 509 GELPILVATDVAARGLDISHVNLVINYDLPNNIDDYVHRIGRTGRAGNLGTAIAFVNEGS 568
Query: 143 K 143
K
Sbjct: 569 K 569
>gi|293335017|ref|NP_001168055.1| uncharacterized protein LOC100381785 [Zea mays]
gi|223945729|gb|ACN26948.1| unknown [Zea mays]
Length = 388
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 61/97 (62%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+ L + L + + +HGD +Q ER + FK + ILVATDVAARGLDIPH+ V
Sbjct: 198 ADSLESWLCMNGFPATSIHGDRNQQEREYALRSFKSGQTPILVATDVAARGLDIPHVAHV 257
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
VN+DL DID + HRIGRTGRAG G+A D +
Sbjct: 258 VNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDNNS 294
>gi|167393063|ref|XP_001740410.1| ATP-dependent RNA helicase DBP1 [Entamoeba dispar SAW760]
gi|165895499|gb|EDR23175.1| ATP-dependent RNA helicase DBP1, putative [Entamoeba dispar SAW760]
Length = 281
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 67/98 (68%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+ L N L Y V +HGD Q++R+ + +FK ++LVATDVA+RGLDIP I V
Sbjct: 104 ADMLENYLYDHGYKVDSIHGDRSQADRDFSLKRFKENVIQLLVATDVASRGLDIPDIEVV 163
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYD+ +I+++ HR+GRTGRAG KG A T + DK ++
Sbjct: 164 INYDMPNEIESYVHRVGRTGRAGKKGTAITFINDKTQN 201
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KG A T + DK + LV LE A QE+P L A +
Sbjct: 184 RAGKKGTAITFINDKTQNLIPSLVSLLEEAKQEIPDWLEEKAQE 227
>gi|308803500|ref|XP_003079063.1| putative DEAD-box RNA helicase DEAD3 (ISS) [Ostreococcus tauri]
gi|116057517|emb|CAL51944.1| putative DEAD-box RNA helicase DEAD3 (ISS), partial [Ostreococcus
tauri]
Length = 492
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
A++L + L +HGD Q ER + + F+ + ILVATDVAARGLDIPH+
Sbjct: 261 GADQLEDFLFTNGKPATSIHGDRTQQEREAALKSFRSGKTPILVATDVAARGLDIPHVTH 320
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGEL 147
V+N+DL DID +THRIGRTGRAG KG A L + KDG++
Sbjct: 321 VINFDLPSDIDDYTHRIGRTGRAGKKGRATALFLE-SKDGQI 361
>gi|417795517|ref|ZP_12442737.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21305]
gi|334270877|gb|EGL89273.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
subsp. aureus 21305]
Length = 506
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>gi|56418761|ref|YP_146079.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
gi|81675946|sp|Q5L3G9.1|CSHA_GEOKA RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|56378603|dbj|BAD74511.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
Length = 467
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L ++ Y +HGD+ Q++R SV+ KFK ILVATDVAARGLDI + V
Sbjct: 254 DELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D +++ HRIGRTGRAG GVA T VT ++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPRE 348
>gi|379796406|ref|YP_005326407.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356873399|emb|CCE59738.1| Probable DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus
subsp. aureus MSHR1132]
Length = 506
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>gi|261418549|ref|YP_003252231.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
gi|297528577|ref|YP_003669852.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
gi|319765363|ref|YP_004130864.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
gi|448236523|ref|YP_007400581.1| DEAD-box ATP-dependent RNA helicase [Geobacillus sp. GHH01]
gi|261375006|gb|ACX77749.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
gi|297251829|gb|ADI25275.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
gi|317110229|gb|ADU92721.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
gi|445205365|gb|AGE20830.1| DEAD-box ATP-dependent RNA helicase [Geobacillus sp. GHH01]
Length = 467
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L ++ Y +HGD+ Q++R SV+ KFK ILVATDVAARGLDI + V
Sbjct: 254 DELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D +++ HRIGRTGRAG GVA T VT ++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPRE 348
>gi|189485761|ref|YP_001956702.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287720|dbj|BAG14241.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 543
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+ +SL + Y +HGDM+QS+RN V++KF+ +L+ATDVAARG+D+ I V
Sbjct: 257 DEVTSSLQARGYYADAIHGDMNQSQRNRVMSKFRNGSIELLIATDVAARGIDVDGIDMVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D + + HRIGRTGRAG G AY+ V+ KD
Sbjct: 317 NFDVPKDDEDYVHRIGRTGRAGKAGKAYSFVSGKD 351
>gi|384428186|ref|YP_005637545.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. raphani
756C]
gi|341937288|gb|AEL07427.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. raphani
756C]
Length = 458
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE 72
T + K AG L+R N E N +++ E+A SL + L LHGDM+Q +
Sbjct: 226 TYRQKAVAGLLLRF----NPESSVVFCNTRKEVD--EVAGSLQEFGFSALALHGDMEQRD 279
Query: 73 RNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG 132
R+ V+ +F + C +LVA+DVAARGLD+ + VVNY+L D +T+ HRIGRT RAG G
Sbjct: 280 RDEVLVRFVNRSCNVLVASDVAARGLDVEDLAAVVNYELPTDTETYRHRIGRTARAGKHG 339
Query: 133 VAYTLVTDKD 142
+A +LV ++
Sbjct: 340 LALSLVAPRE 349
>gi|302874235|ref|YP_003842868.1| DEAD/DEAH box helicase [Clostridium cellulovorans 743B]
gi|307689501|ref|ZP_07631947.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
cellulovorans 743B]
gi|302577092|gb|ADL51104.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
743B]
Length = 536
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL +S+ + Y V +HGDM+Q++R + + KFK LVATDVAARG+D+ ++ V+
Sbjct: 258 DELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFLVATDVAARGIDVENVTHVI 317
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYDL +D +++ HRIGRTGRA +G AYTLVT ++
Sbjct: 318 NYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPRE 352
>gi|256088559|ref|XP_002580398.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 1476
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 70/116 (60%)
Query: 24 VRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ 83
V L G QE L+ + Q +A+EL L Y L LHG +DQ +R+SVI FKR
Sbjct: 1019 VLELLGIYQEEGSVLVFVEKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRG 1078
Query: 84 ECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
R+L+AT VAARGLD+ + V+NYD + + HR GRTGRAG KG AYT +T
Sbjct: 1079 NIRLLIATSVAARGLDVTDLLLVINYDCPNHYEDYVHRCGRTGRAGRKGFAYTFLT 1134
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNL 41
RAG KG AYT +T + AG +VR + + Q+ P LMN+
Sbjct: 1122 RAGRKGFAYTFLTPDQERSAGDVVRAFKQSGQKPPEELMNM 1162
>gi|237746640|ref|ZP_04577120.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
gi|229377991|gb|EEO28082.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
Length = 461
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 70/106 (66%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ A + +A+ +A+ L + + LHGDM Q+ RN + K + + +ILVATDVAAR
Sbjct: 271 ALVFTATKRDADLVADRLAIAGFSTAALHGDMPQNARNRTLAKLRDGKVKILVATDVAAR 330
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+DIP I V NYDL + + + HRIGRTGRAG G+A +LV+ D
Sbjct: 331 GIDIPSITHVFNYDLPKFPEDYVHRIGRTGRAGRHGLAISLVSHSD 376
>gi|226329076|ref|ZP_03804594.1| hypothetical protein PROPEN_02979 [Proteus penneri ATCC 35198]
gi|225202262|gb|EEG84616.1| DEAD/DEAH box helicase [Proteus penneri ATCC 35198]
Length = 340
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 64/97 (65%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +++ +LT VL LHGDM+Q ER+ + +F CR+LVATDVAARGLDI +
Sbjct: 195 DCQDVYETLTESNQSVLALHGDMEQRERDQTLIRFANGSCRVLVATDVAARGLDIKALEM 254
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V+NY+L+ D + H HRIGRT RAG G+A + ++
Sbjct: 255 VINYELSWDPEVHVHRIGRTARAGESGLAISFCAPEE 291
>gi|241948951|ref|XP_002417198.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
gi|223640536|emb|CAX44790.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
Length = 399
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 71/112 (63%)
Query: 31 NQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVA 90
N + A++ +L LA+ + + + V+ +HGDM Q ER+S++ +F+R R+L++
Sbjct: 262 NLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNEFRRGNSRVLIS 321
Query: 91 TDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
TDV ARG+D+ + V+NYDL D + + HRIGR+GR G KG A L+T D
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDD 373
>gi|367020544|ref|XP_003659557.1| hypothetical protein MYCTH_2296766 [Myceliophthora thermophila ATCC
42464]
gi|347006824|gb|AEO54312.1| hypothetical protein MYCTH_2296766 [Myceliophthora thermophila ATCC
42464]
Length = 993
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 66/103 (64%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ + Q A++L L + Y + +HG DQ +RNS I+ FK+ C I++AT VAAR
Sbjct: 612 ALIFVERQEKADDLLRELLRRGYGCMSIHGGKDQEDRNSTISDFKKGVCPIMIATSVAAR 671
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
GLD+ ++ V+NYD ++ + HR GRTGRAGN G A T VT
Sbjct: 672 GLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVT 714
>gi|323526518|ref|YP_004228671.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323383520|gb|ADX55611.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 536
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 75/117 (64%), Gaps = 5/117 (4%)
Query: 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
HL+R+ G +Q A++ A +++A++LA L ++ LHGD+ Q RN I +
Sbjct: 304 HLLRD-AGLDQ----AIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTIRALR 358
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+ R+LVATDVAARG+DIP I V NYDL + + + HRIGRTGRAG G+A +LV
Sbjct: 359 ERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSLV 415
>gi|221141602|ref|ZP_03566095.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|384862733|ref|YP_005745453.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|302751962|gb|ADL66139.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
aureus subsp. aureus str. JKD6008]
Length = 506
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555]
gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016]
gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555]
gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 524
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/110 (43%), Positives = 74/110 (67%)
Query: 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92
E A++ + +EL S+ + Y+V +HGDM Q++R + + KFK LVATD
Sbjct: 242 EPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLDFLVATD 301
Query: 93 VAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VAARG+D+ ++ V+NYDL +D +++ HRIGRTGRA +G+AY+LVT ++
Sbjct: 302 VAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPRE 351
>gi|354557827|ref|ZP_08977084.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353549501|gb|EHC18942.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 497
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA L + Y +HGD+ QS+R+SV+ +FK ILVATDVAARGLDI + V
Sbjct: 254 DELAEGLNKRGYSAEGIHGDLTQSKRDSVLRQFKEGTIEILVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELR 148
N+D+ +D +++ HRIGRTGRAG G+A T VT ++ G+LR
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKTGLAVTFVTPREI-GQLR 353
>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
E681]
gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
polymyxa E681]
Length = 529
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 70/97 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L + Y LHGD+ Q++R++V+ KF+ +LVATDVAARGLD+ + VV
Sbjct: 254 DELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVAARGLDVSGVTHVV 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+DL +D +++ HRIGRTGRAG +G A++ VT ++ D
Sbjct: 314 NFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREID 350
>gi|297589855|ref|ZP_06948495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus MN8]
gi|297576983|gb|EFH95697.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus MN8]
Length = 517
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 265 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 324
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 325 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 361
>gi|257457389|ref|ZP_05622560.1| DEAD/DEAH box helicase [Treponema vincentii ATCC 35580]
gi|257445311|gb|EEV20383.1| DEAD/DEAH box helicase [Treponema vincentii ATCC 35580]
Length = 646
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ +V ++DK A LVR ++ A L+ +++A+ +A L + Y+ LHGD+
Sbjct: 236 FWMVREEDKSEA--LVRLIDTAENFY--GLVFCQTKVDADAVAKELDERHYEAAALHGDI 291
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
Q +R ++++F+ + RILVATDVAARG+DI I VVNY + D T+THRIGRTGRA
Sbjct: 292 PQGQREKILSRFRAGKTRILVATDVAARGIDIEGITHVVNYSIPYDGPTYTHRIGRTGRA 351
Query: 129 GNKGVAYTLVTDKDK 143
G KG A + + ++
Sbjct: 352 GAKGTAVSFIRPNER 366
>gi|253731082|ref|ZP_04865247.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|297210100|ref|ZP_06926493.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|300910462|ref|ZP_07127914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus TCH70]
gi|304379262|ref|ZP_07362001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|384867000|ref|YP_005747196.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus TCH60]
gi|422743011|ref|ZP_16797007.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
MRSA177]
gi|422745973|ref|ZP_16799908.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
MRSA131]
gi|424771982|ref|ZP_18199098.1| putative DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
aureus subsp. aureus CM05]
gi|253725209|gb|EES93938.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|296885300|gb|EFH24240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|300888304|gb|EFK83495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus TCH70]
gi|304342121|gb|EFM08021.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|312437505|gb|ADQ76576.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus TCH60]
gi|320140748|gb|EFW32600.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320143723|gb|EFW35500.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
MRSA177]
gi|402347512|gb|EJU82540.1| putative DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
aureus subsp. aureus CM05]
gi|408424041|emb|CCJ11452.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408426030|emb|CCJ13417.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408428018|emb|CCJ15381.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408430007|emb|CCJ27172.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408431993|emb|CCJ19308.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408433988|emb|CCJ21273.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408435980|emb|CCJ23240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
gi|408437963|emb|CCJ25206.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
aureus subsp. aureus ST228]
Length = 517
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 265 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 324
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 325 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 361
>gi|375007039|ref|YP_004980670.1| DEAD-box ATP-dependent RNA helicase cshA [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|359285886|gb|AEV17570.1| DEAD-box ATP-dependent RNA helicase cshA [Geobacillus
thermoleovorans CCB_US3_UF5]
Length = 467
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L ++ Y +HGD+ Q++R SV+ KFK ILVATDVAARGLDI + V
Sbjct: 254 DELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D +++ HRIGRTGRAG GVA T VT ++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPRE 348
>gi|71659539|ref|XP_821491.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
Brener]
gi|70886872|gb|EAN99640.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
Length = 595
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/114 (43%), Positives = 71/114 (62%)
Query: 30 ANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILV 89
AN L+ + A++L L YD + +HGD +Q +R ++ +F++ LV
Sbjct: 351 ANHRNQRVLIFCKTKRTADDLEWQLKRWGYDAMAIHGDKEQRQREFILERFRKDPRLCLV 410
Query: 90 ATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
ATDVAARGLDI + TV+NYD ID + HRIGRTGRAG KG A+TL+T +++
Sbjct: 411 ATDVAARGLDIKELETVINYDFPMQIDDYVHRIGRTGRAGAKGEAFTLITKREQ 464
>gi|421716313|ref|ZP_16155624.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R037c]
gi|407220576|gb|EKE90382.1| helicase conserved C-terminal domain protein [Helicobacter pylori
R037c]
Length = 492
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|420406445|ref|ZP_14905615.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6311]
gi|393023282|gb|EJB24396.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori CPY6311]
Length = 492
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|360044201|emb|CCD81748.1| unnamed protein product [Schistosoma mansoni]
Length = 1328
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 70/116 (60%)
Query: 24 VRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ 83
V L G QE L+ + Q +A+EL L Y L LHG +DQ +R+SVI FKR
Sbjct: 871 VLELLGIYQEEGSVLVFVEKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRG 930
Query: 84 ECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
R+L+AT VAARGLD+ + V+NYD + + HR GRTGRAG KG AYT +T
Sbjct: 931 NIRLLIATSVAARGLDVTDLLLVINYDCPNHYEDYVHRCGRTGRAGRKGFAYTFLT 986
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNL 41
RAG KG AYT +T + AG +VR + + Q+ P LMN+
Sbjct: 974 RAGRKGFAYTFLTPDQERSAGDVVRAFKQSGQKPPEELMNM 1014
>gi|384548306|ref|YP_005737559.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
ED133]
gi|298695355|gb|ADI98577.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
ED133]
Length = 487
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 235 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 294
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 295 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 331
>gi|225174307|ref|ZP_03728306.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
AHT 1]
gi|225170092|gb|EEG78887.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
AHT 1]
Length = 424
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 71/106 (66%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ + A +L +L Y LHGD+ Q++R V+ +F++ ++LVATDVAAR
Sbjct: 244 ALIFCRTKRRAAKLNQALLEHGYSADELHGDLSQAKREQVMKRFRQAHIQLLVATDVAAR 303
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
GLD+ I V NYD+ +D++++ HRIGRTGRAG KG+A TLV KD
Sbjct: 304 GLDVEGITHVFNYDIPQDLESYIHRIGRTGRAGEKGLALTLVAPKD 349
>gi|237808150|ref|YP_002892590.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237500411|gb|ACQ93004.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 468
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 70/106 (66%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ LA + + E LA + L L GDM Q++RN VI +F R ++L TDVAAR
Sbjct: 249 AIVFLATREDTERLAKQYSELNIPALALSGDMKQAQRNQVIDQFSRGHAKVLFTTDVAAR 308
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
GLD+ H+ VVN+D+ + + + HRIGRTGRAGN+G A +L++ KD
Sbjct: 309 GLDLLHVSLVVNFDMPKLPEEYIHRIGRTGRAGNQGNAVSLISPKD 354
>gi|58426933|gb|AAW75970.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
Length = 482
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 66/95 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A SL + L LHGDM+Q +R+ V+ +F + C +LVA+DVAARGLD+ + VV
Sbjct: 279 DEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVV 338
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NY+L D +T+ HRIGRT RAG G+A +LV ++
Sbjct: 339 NYELPTDTETYRHRIGRTARAGKHGLALSLVAPRE 373
>gi|21231720|ref|NP_637637.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66768154|ref|YP_242916.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
campestris str. 8004]
gi|188991291|ref|YP_001903301.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
campestris str. B100]
gi|21113422|gb|AAM41561.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66573486|gb|AAY48896.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
gi|167733051|emb|CAP51249.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
Length = 458
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE 72
T + K AG L+R N E N +++ E+A SL + L LHGDM+Q +
Sbjct: 226 TYRQKAVAGLLLRF----NPESSVVFCNTRKEVD--EVAGSLQEFGFSALALHGDMEQRD 279
Query: 73 RNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG 132
R+ V+ +F + C +LVA+DVAARGLD+ + VVNY+L D +T+ HRIGRT RAG G
Sbjct: 280 RDEVLVRFVNRSCNVLVASDVAARGLDVEDLAAVVNYELPTDTETYRHRIGRTARAGKHG 339
Query: 133 VAYTLVTDKD 142
+A +LV ++
Sbjct: 340 LALSLVAPRE 349
>gi|253733085|ref|ZP_04867250.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
TCH130]
gi|253728993|gb|EES97722.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
TCH130]
Length = 517
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 265 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 324
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 325 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 361
>gi|431892646|gb|ELK03079.1| Putative ATP-dependent RNA helicase DDX46 [Pteropus alecto]
Length = 1580
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/112 (45%), Positives = 69/112 (61%)
Query: 29 GANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRIL 88
G QE ++ + Q +A+ L L Y + LHG +DQ +R+S+I FK C++L
Sbjct: 942 GHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 1001
Query: 89 VATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
VAT VAARGLD+ H+ VVNY + + HR GRTGRAGNKG AYT +T+
Sbjct: 1002 VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITE 1053
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKE 58
RAGNKG AYT +T+ +AG +++ LE + VPP L L ++ A +K+
Sbjct: 1040 RAGNKGYAYTFITEDQARYAGDIIKALELSGTTVPPDLEKLWSDFKDQQKAEGKIIKK 1097
>gi|282909394|ref|ZP_06317209.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282326664|gb|EFB56962.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
aureus subsp. aureus WW2703/97]
Length = 467
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 215 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 274
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 275 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 311
>gi|241888805|ref|ZP_04776111.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379]
gi|241864481|gb|EER68857.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379]
Length = 486
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 66/92 (71%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
+ELA++L K Y LHGD+ QS+R ++ KFK +ILVATDVAARG+DI + V
Sbjct: 252 VDELASALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQILVATDVAARGIDISDVTHV 311
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
N+D+ +D++++THRIGRTGRAG GVA T +
Sbjct: 312 YNFDIPQDVESYTHRIGRTGRAGKSGVAITFL 343
>gi|355571182|ref|ZP_09042434.1| DEAD/DEAH box helicase domain protein [Methanolinea tarda NOBI-1]
gi|354825570|gb|EHF09792.1| DEAD/DEAH box helicase domain protein [Methanolinea tarda NOBI-1]
Length = 441
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 70/106 (66%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ + +E+A+ L + Y LHGDMDQ ER V+++F+ + ILVATDVAAR
Sbjct: 246 ALVFCNTKRRVDEVASQLQARGYLAESLHGDMDQKERERVMSRFRSRSTDILVATDVAAR 305
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+ I V N+D+ +D + + HRIGRTGRAG G A+T V+ K+
Sbjct: 306 GIDVEEIGIVFNFDVPQDPEYYIHRIGRTGRAGKSGKAFTFVSGKE 351
>gi|212526914|ref|XP_002143614.1| ATP-dependent RNA helicase , putative [Talaromyces marneffei ATCC
18224]
gi|210073012|gb|EEA27099.1| ATP-dependent RNA helicase , putative [Talaromyces marneffei ATCC
18224]
Length = 474
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 61/90 (67%)
Query: 59 YDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTH 118
+ + LHG + QS R + I+KF+ + IL+ATDVAARGLDIP + V+NYDLA D TH
Sbjct: 310 FSAIALHGQLSQSSRLASISKFRSKTRSILIATDVAARGLDIPSVDLVLNYDLAADSKTH 369
Query: 119 THRIGRTGRAGNKGVAYTLVTDKDKDGELR 148
HRIGRT RAG G A +LVT D + LR
Sbjct: 370 VHRIGRTARAGKSGKAISLVTQYDVEVWLR 399
>gi|386729768|ref|YP_006196151.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
71193]
gi|418979357|ref|ZP_13527153.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
DR10]
gi|379992788|gb|EIA14238.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
DR10]
gi|384231061|gb|AFH70308.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
71193]
Length = 517
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 265 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 324
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 325 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 361
>gi|156103333|ref|XP_001617359.1| ATP-dependent RNA helicase [Plasmodium vivax Sal-1]
gi|148806233|gb|EDL47632.1| ATP-dependent RNA helicase, putative [Plasmodium vivax]
Length = 717
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 61/89 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
N + L L +Y+ L +HGD +Q ER+ +++ ++ C ILVATDVA+RGLDI +I
Sbjct: 586 NCDSLCKELRYHQYNALAIHGDKEQRERDRILSNYRSDRCNILVATDVASRGLDIKNISV 645
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVA 134
VVNYDL I+ + HRIGRTGRAG KG A
Sbjct: 646 VVNYDLPNTIEDYIHRIGRTGRAGQKGRA 674
>gi|123325507|gb|ABM74410.1| vasa protein [Botrylloides violaceus]
Length = 630
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 52/102 (50%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
NA+ LA L+ + +HGD Q ER + + FK C IL+AT VAARGLDIP +
Sbjct: 467 NADFLATFLSQEGLPTTSIHGDRQQRERETALLDFKNGRCPILIATSVAARGLDIPKVEH 526
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGEL 147
V+NYDL DID + HRIGRTGR GN G A + +D DKD L
Sbjct: 527 VINYDLPSDIDEYVHRIGRTGRCGNLGSATSFYSD-DKDNAL 567
>gi|386748255|ref|YP_006221463.1| ATP-dependent RNA helicase [Helicobacter cetorum MIT 99-5656]
gi|384554497|gb|AFI06253.1| ATP-dependent RNA helicase [Helicobacter cetorum MIT 99-5656]
Length = 507
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 65/104 (62%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A EL L K Y LHGDM+Q ER + I FK+ +LVATDVA+RGLDI + V
Sbjct: 286 ANELHKILVSKNYKSTALHGDMEQRERRTSIMAFKKNAADVLVATDVASRGLDISDVSHV 345
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 346 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 389
>gi|227528896|ref|ZP_03958945.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
ATCC 49540]
gi|227351170|gb|EEJ41461.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
ATCC 49540]
Length = 501
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 64/97 (65%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ L + Y+ +HGD+ Q R ++ KFK E ILVATDVAARGLDI + V
Sbjct: 253 DELSRGLVARGYNAAGIHGDLSQDRRTKIMKKFKHGELDILVATDVAARGLDISGVTHVY 312
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
NYD+ D D++ HRIGRTGRAG+ GV+ T VT + D
Sbjct: 313 NYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMD 349
>gi|42521946|ref|NP_967326.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
gi|39574476|emb|CAE77980.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus
HD100]
Length = 412
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 82/130 (63%), Gaps = 8/130 (6%)
Query: 16 DKEF--AGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSER 73
DK F A +L +N +G ++ + ++ AE +A +L E L LHG+ DQ++R
Sbjct: 231 DKRFFLAEYLRQNPDGK------FIIFVRTRVRAERVAKALARVEVQSLTLHGEKDQTDR 284
Query: 74 NSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGV 133
V+ F++ +C+IL+ATD++ARG+DIP + V+NYDL + + HRIGRTGR NKGV
Sbjct: 285 AEVMKTFRKGDCKILIATDLSARGIDIPDVTHVINYDLPEKPENYVHRIGRTGRGFNKGV 344
Query: 134 AYTLVTDKDK 143
A + + ++K
Sbjct: 345 AVSFCSTEEK 354
>gi|367042554|ref|XP_003651657.1| hypothetical protein THITE_2112188 [Thielavia terrestris NRRL 8126]
gi|346998919|gb|AEO65321.1| hypothetical protein THITE_2112188 [Thielavia terrestris NRRL 8126]
Length = 1193
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 69/108 (63%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ + Q A++L L + Y + +HG DQ +RNS I+ FK+ C IL+AT VAAR
Sbjct: 813 ALIFVERQEKADDLLRELLRRGYGCMSIHGGKDQEDRNSTISDFKKGVCPILIATSVAAR 872
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
GLD+ + VVNYD ++ + HR GRTGRAGN G A T +T++ ++
Sbjct: 873 GLDVKQLTLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEN 920
>gi|332297229|ref|YP_004439151.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
12168]
gi|332180332|gb|AEE16020.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
12168]
Length = 632
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 85/138 (61%), Gaps = 10/138 (7%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAM---QLNAEELANSLTVKEYDVLLLH 65
Y +V + DK A LVR ++ + P L + +A+ + L + Y+ LH
Sbjct: 223 YWIVRESDKIEA--LVRLID-----ISPDFYGLVFTQTKADADMITRQLDERGYEAAALH 275
Query: 66 GDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRT 125
GD+ Q++R ++ +F+ ++ RILVATDVAARG+DI + VVNY L D T+ HRIGRT
Sbjct: 276 GDIPQAQREKILYRFRNKKTRILVATDVAARGIDIEGLTHVVNYALPFDGPTYVHRIGRT 335
Query: 126 GRAGNKGVAYTLVTDKDK 143
GRAG KG+A+TLV +++
Sbjct: 336 GRAGAKGLAFTLVRPEER 353
>gi|154418331|ref|XP_001582184.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121916417|gb|EAY21198.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 640
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Query: 11 LVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQ 70
LVT++D +F L + G AL+ Q AE+L L Y V LLHG MD
Sbjct: 323 LVTNEDNKFNSLL--KILGDYTTQGQALVFTNTQDRAEDLFGKLNKSGYSVGLLHGSMDS 380
Query: 71 SERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130
+RNS++ F+ +LV T V ARG+DI I V+NYD + HR+GRTGRAG
Sbjct: 381 PDRNSILHDFREGRFSVLVLTSVGARGIDIASIICVINYDAPDHEADYVHRVGRTGRAGK 440
Query: 131 KGVAYTLVTDKDK 143
KG A+T VTDKDK
Sbjct: 441 KGYAFTFVTDKDK 453
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEEL 50
RAG KG A+T VTDKDK A + ++ + E+P L +L + A L
Sbjct: 437 RAGKKGYAFTFVTDKDKTAAAGIKNAMKKSGCEIPKDLEDLCQGVKAPGL 486
>gi|432895747|ref|XP_004076142.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Oryzias
latipes]
Length = 1043
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 56/132 (42%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ LV ++D++F L + G QE ++ + Q +A+ L L Y L LHG +
Sbjct: 591 HVLVIEEDQKFLKLL--EILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCLSLHGGI 648
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
DQ +R+S+I FK CR++VAT VAARGLD+ + VVNY+ + + HR GRTGRA
Sbjct: 649 DQYDRDSIINDFKNGVCRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVHRAGRTGRA 708
Query: 129 GNKGVAYTLVTD 140
GNKG AYT +T+
Sbjct: 709 GNKGYAYTFITE 720
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK 57
RAGNKG AYT +T+ +AG +++ LE + VPP L L ++ A T+K
Sbjct: 707 RAGNKGYAYTFITEDQVRYAGDIIKGLELSGAPVPPELEQLWASFKDQQKAEGKTIK 763
>gi|84624218|ref|YP_451590.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|161898981|ref|YP_201355.2| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|188576177|ref|YP_001913106.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|84368158|dbj|BAE69316.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188520629|gb|ACD58574.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 458
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 66/95 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A SL + L LHGDM+Q +R+ V+ +F + C +LVA+DVAARGLD+ + VV
Sbjct: 255 DEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLSAVV 314
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NY+L D +T+ HRIGRT RAG G+A +LV ++
Sbjct: 315 NYELPTDTETYRHRIGRTARAGKHGLALSLVAPRE 349
>gi|330793454|ref|XP_003284799.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum]
gi|325085293|gb|EGC38703.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum]
Length = 558
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 55/145 (37%), Positives = 85/145 (58%), Gaps = 4/145 (2%)
Query: 3 GNKGVAYTLVTDKDKEFA---GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEY 59
G G A VT ++ EF +V LE + PP L+ + + +++ L +K+
Sbjct: 327 GRAGAANLNVT-QEVEFVKPEAKIVYLLECLQKTPPPVLIFCENKKDVDDIYEYLLLKQV 385
Query: 60 DVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHT 119
+ + +HGD Q ER I F+ + +LVATDVA++GLD P I+ V+N+D+ R+I+ +
Sbjct: 386 EAVSIHGDKSQEEREGAIKAFREGKKDVLVATDVASKGLDFPDIQHVINFDMPREIENYI 445
Query: 120 HRIGRTGRAGNKGVAYTLVTDKDKD 144
HRIGRTGR GNKGVA T + + +
Sbjct: 446 HRIGRTGRRGNKGVATTFINKTNTE 470
>gi|406971225|gb|EKD95359.1| ATP-dependent RNA helicase [uncultured bacterium]
Length = 396
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 63/92 (68%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
+ L+N L + + +HG+ QS+R ++ KFKR E RIL+ATDVA+RGLDIP++ V
Sbjct: 304 VQRLSNELVKRGFKADAIHGNKRQSQRIRILEKFKRNEIRILIATDVASRGLDIPNVSHV 363
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+NYDL + + HRIGRTGRA KG+A T V
Sbjct: 364 INYDLPESYEAYIHRIGRTGRADKKGIALTFV 395
>gi|390456495|ref|ZP_10242023.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus peoriae
KCTC 3763]
Length = 526
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 70/97 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L + Y LHGD+ Q++R++V+ KF+ +LVATDVAARGLD+ + VV
Sbjct: 254 DELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVAARGLDVSGVTHVV 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+DL +D +++ HRIGRTGRAG +G A++ VT ++ D
Sbjct: 314 NFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREID 350
>gi|336123203|ref|YP_004565251.1| DbpA [Vibrio anguillarum 775]
gi|335340926|gb|AEH32209.1| DbpA [Vibrio anguillarum 775]
Length = 461
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 68/95 (71%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A L K + V+ LHGD++Q +R+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QSVAEDLHHKGFSVVELHGDLEQRDRDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGSKGLAFSFFSDSE 351
>gi|330501428|ref|YP_004378297.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina NK-01]
gi|328915714|gb|AEB56545.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina NK-01]
Length = 458
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 69/107 (64%)
Query: 36 PALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAA 95
P + A + +ELA L ++ LHGD++Q ER+ ++ F + +LVATDVAA
Sbjct: 244 PVVAFCATRQQCDELAAQLEAEKISAAALHGDLEQRERDQILALFANRSLSVLVATDVAA 303
Query: 96 RGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
RGLDI + V+N +L+RD + H HRIGR+GRAG+KG+A +LV +
Sbjct: 304 RGLDIAGLEMVINVELSRDAEVHIHRIGRSGRAGDKGLALSLVAPPE 350
>gi|310641357|ref|YP_003946115.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|386040399|ref|YP_005959353.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
polymyxa SC2]
gi|343096437|emb|CCC84646.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
Length = 525
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 70/97 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L + Y LHGD+ Q++R++V+ KF+ +LVATDVAARGLD+ + VV
Sbjct: 254 DELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVAARGLDVSGVTHVV 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+DL +D +++ HRIGRTGRAG +G A++ VT ++ D
Sbjct: 314 NFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREID 350
>gi|171680181|ref|XP_001905036.1| hypothetical protein [Podospora anserina S mat+]
gi|170939717|emb|CAP64943.1| unnamed protein product [Podospora anserina S mat+]
Length = 1221
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 70/108 (64%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ + Q ++L L + Y + +HG DQ +RNS I+ FK+ C IL+AT VAAR
Sbjct: 833 ALIFVERQEKTDDLLRELLRRGYGCMSIHGGKDQEDRNSTISDFKKGVCPILIATSVAAR 892
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
GLD+ ++ V+NYD+ ++ + HR GRTGRAGN G A T +T++ ++
Sbjct: 893 GLDVKQLKLVINYDVPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEN 940
>gi|375308018|ref|ZP_09773305.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
gi|375080349|gb|EHS58570.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
Length = 526
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 70/97 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L + Y LHGD+ Q++R++V+ KF+ +LVATDVAARGLD+ + VV
Sbjct: 254 DELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVAARGLDVSGVTHVV 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+DL +D +++ HRIGRTGRAG +G A++ VT ++ D
Sbjct: 314 NFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREID 350
>gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 514
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 69/96 (71%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
+EL ++ + Y+V +HGDM Q++R + + KFK LVATDVAARG+DI ++ V
Sbjct: 253 VDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGNLDFLVATDVAARGIDIENLTHV 312
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+NY+L +D++++ HRIGRTGRA GVAYTLVT ++
Sbjct: 313 INYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSRE 348
>gi|406939141|gb|EKD72227.1| hypothetical protein ACD_45C00735G0003 [uncultured bacterium]
Length = 427
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 71/106 (66%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A ++NA++LA LT + Y LHGD+ Q+ RN + + +R + + LVATDVAAR
Sbjct: 245 AIIFSATKINADKLAGELTDQGYAAAALHGDLKQNVRNRTMERMRRNKIQFLVATDVAAR 304
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+ I V+NYDL + + + HRIGRTGRAG G+A +L T D
Sbjct: 305 GIDVQDITHVINYDLPKFSEDYVHRIGRTGRAGKTGIAISLATSSD 350
>gi|401625757|gb|EJS43750.1| dbp3p [Saccharomyces arboricola H-6]
Length = 517
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 61/85 (71%)
Query: 59 YDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTH 118
Y V +HGD+ Q +R + +FK +C +L+ATDVAARGLDIP+++TV+N ++ +
Sbjct: 378 YSVAAIHGDLSQQQRTQALNEFKSGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDY 437
Query: 119 THRIGRTGRAGNKGVAYTLVTDKDK 143
HRIGRTGRAG G A+TL T+++K
Sbjct: 438 VHRIGRTGRAGQTGTAHTLFTEQEK 462
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEE 49
RAG G A+TL T+++K AG LV L GANQ VP L+ +E
Sbjct: 446 RAGQTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPEDLIKFGTHTKKKE 494
>gi|167391022|ref|XP_001733479.1| ATP-dependent RNA helicase DDX3X [Entamoeba dispar SAW760]
gi|165896682|gb|EDR24029.1| ATP-dependent RNA helicase DDX3X, putative [Entamoeba dispar
SAW760]
Length = 392
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 67/98 (68%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+ L N L Y V +HGD Q++R+ + +FK ++LVATDVA+RGLDIP I V
Sbjct: 203 ADMLENYLYDHGYKVDSIHGDRSQADRDFSLKRFKENVIQLLVATDVASRGLDIPDIEVV 262
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYD+ +I+++ HR+GRTGRAG KG A T + DK ++
Sbjct: 263 INYDMPNEIESYVHRVGRTGRAGKKGTAITFINDKTQN 300
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPAL 38
RAG KG A T + DK + LV LE A QE+P L
Sbjct: 283 RAGKKGTAITFINDKTQNLIPSLVSLLEEAKQEIPDWL 320
>gi|158298027|ref|XP_318117.4| AGAP004711-PA [Anopheles gambiae str. PEST]
gi|157014611|gb|EAA13218.5| AGAP004711-PA [Anopheles gambiae str. PEST]
Length = 613
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 82/139 (58%), Gaps = 4/139 (2%)
Query: 3 GNKGVAYTLVTDKDKEFA---GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEY 59
G G A VT +D E+ +V LE + PP L+ + + + + L +K
Sbjct: 392 GRAGAASMNVT-QDVEYVKQEAKVVYLLECLQKTPPPVLIFAEKKQDVDAIHEYLLLKGV 450
Query: 60 DVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHT 119
+ + +HG DQ ER + F+ QE +LVATDVA++GLD P ++ V+NYD+ DI+ +
Sbjct: 451 EAVAIHGGKDQEERYRSVESFRNQEKDVLVATDVASKGLDFPDVQHVINYDMPDDIENYV 510
Query: 120 HRIGRTGRAGNKGVAYTLV 138
HRIGRTGR+G+KG+A T +
Sbjct: 511 HRIGRTGRSGSKGLATTFI 529
>gi|152991450|ref|YP_001357172.1| DEAD-box ATP dependent DNA helicase [Nitratiruptor sp. SB155-2]
gi|151423311|dbj|BAF70815.1| ATP-dependent RNA helicase, DEAD-box family [Nitratiruptor sp.
SB155-2]
Length = 471
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 66/108 (61%)
Query: 43 MQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPH 102
M++ + LA L + Y LHGDM Q +R I FKR IL+ATDVAARGLDI
Sbjct: 245 MKIEVDRLAQFLEAQGYSAKGLHGDMQQRQREETIKAFKRGNIEILIATDVAARGLDISD 304
Query: 103 IRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
+ V NY + D +++ HRIGRTGRAG +G+A +LVT + LR Q
Sbjct: 305 VSHVFNYHIPFDPESYVHRIGRTGRAGKEGIAISLVTPHEFKQLLRIQ 352
>gi|150863785|ref|XP_001382380.2| pre-mRNA splicing factor RNA helicase of DEAD box family
[Scheffersomyces stipitis CBS 6054]
gi|158514818|sp|A3LNL1.2|PRP28_PICST RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
gi|149385041|gb|ABN64351.2| pre-mRNA splicing factor RNA helicase of DEAD box family
[Scheffersomyces stipitis CBS 6054]
Length = 482
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/85 (50%), Positives = 60/85 (70%)
Query: 60 DVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHT 119
D +++HG Q R I+ F+ E RIL+ATDVAARG+D+P++ VVN+ ++R D +
Sbjct: 365 DNVVIHGSKTQELREKAISSFRSHESRILIATDVAARGIDVPNVSLVVNFQMSRKFDEYV 424
Query: 120 HRIGRTGRAGNKGVAYTLVTDKDKD 144
HRIGRTGRAGN+G +YT + D D D
Sbjct: 425 HRIGRTGRAGNRGESYTFIDDSDSD 449
>gi|260776996|ref|ZP_05885890.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
gi|260606662|gb|EEX32936.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
Length = 449
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 82/123 (66%), Gaps = 2/123 (1%)
Query: 23 LVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82
L R LE A E ++ A +++ E L + L K+ + L G+++Q++RN+++++F+R
Sbjct: 243 LERILEEA--EYKQLIIFTATRVDTERLTDKLNEKKLKAIALSGNLNQTQRNTIMSQFER 300
Query: 83 QECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+ILV TDVA+RGLDI ++ VVN+D+ + + + HR+GRTGRAGNKG A +LV KD
Sbjct: 301 AVFKILVTTDVASRGLDIANVTHVVNFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKD 360
Query: 143 KDG 145
D
Sbjct: 361 WDS 363
>gi|70936196|ref|XP_739078.1| helicase [Plasmodium chabaudi chabaudi]
gi|56515797|emb|CAH84410.1| helicase, putative [Plasmodium chabaudi chabaudi]
Length = 165
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 72/108 (66%)
Query: 35 PPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVA 94
PP ++ + + A+ +A S++ ++ + LHG Q R + FK E ILVATDVA
Sbjct: 11 PPIIVFVNQKKVADIIAKSISKMKFKAIALHGGKVQEMREEALNAFKNGEFDILVATDVA 70
Query: 95 ARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
RG+D+ ++ V+N+DL +DI ++THRIGRTGRAG KG+A + VT++D
Sbjct: 71 GRGIDVHGVKLVINFDLPKDIASYTHRIGRTGRAGMKGLAISFVTEQD 118
>gi|325959925|ref|YP_004291391.1| DEAD/DEAH box helicase [Methanobacterium sp. AL-21]
gi|325331357|gb|ADZ10419.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. AL-21]
Length = 529
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 67/96 (69%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
++L N L ++ Y LHGDM Q +R++V++KF+ ILVATDVAARG+D+ ++ V
Sbjct: 256 VDKLVNHLQIRGYAADGLHGDMSQRQRDNVMSKFRSGNIEILVATDVAARGIDVDNVEAV 315
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ D + + HRIGRTGRAG G+AYT V+ K+
Sbjct: 316 FNFDVPNDDEYYVHRIGRTGRAGKTGIAYTFVSGKE 351
>gi|323306983|gb|EGA60267.1| Dbp1p [Saccharomyces cerevisiae FostersO]
Length = 452
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 65/98 (66%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A++L + L ++ + +HGD Q+ER ++ FK ILVAT VAARGLDIP++ V
Sbjct: 259 ADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHV 318
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYDL DID + HRIGRTGRAGN GVA + +++
Sbjct: 319 INYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQN 356
>gi|294947712|ref|XP_002785456.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
50983]
gi|239899367|gb|EER17252.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
50983]
Length = 695
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/121 (47%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 23 LVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82
L R LE +E L+ + + A+E+ N L Y +HGD Q ER + FK
Sbjct: 455 LYRVLEEQTEE-GLTLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWEREEALKAFKS 513
Query: 83 QECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
E ILVATDVAARGLDI H+ V+NYDL +ID + HRIGRTGRAGN G A V +
Sbjct: 514 GELPILVATDVAARGLDISHVNLVINYDLPNNIDDYVHRIGRTGRAGNLGTAIAFVNEGS 573
Query: 143 K 143
K
Sbjct: 574 K 574
>gi|339480712|ref|ZP_08656371.1| superfamily II DNA/RNA helicase [Leuconostoc pseudomesenteroides
KCTC 3652]
Length = 516
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 64/97 (65%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
EELA L + Y LHGD+ Q R+ V+ +FK E ILVATDVAARGLD+ + V
Sbjct: 253 EELARGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILVATDVAARGLDVKDVSHVY 312
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++ HRIGRTGRAG KGV+ T V + D
Sbjct: 313 NFDIPQDPESYVHRIGRTGRAGAKGVSVTFVAPNEMD 349
>gi|296111234|ref|YP_003621616.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
gi|339491490|ref|YP_004705995.1| ATP-dependent RNA helicase [Leuconostoc sp. C2]
gi|295832766|gb|ADG40647.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
gi|338853162|gb|AEJ31372.1| ATP-dependent RNA helicase [Leuconostoc sp. C2]
Length = 532
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 65/97 (67%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
EEL+ L + Y LHGD+ Q R+ V+ +FK E ILVATDVAARGLD+ + V
Sbjct: 253 EELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILVATDVAARGLDVKDVSHVY 312
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++ HRIGRTGRAG KGV+ TLV + D
Sbjct: 313 NFDIPQDPESYVHRIGRTGRAGAKGVSVTLVAPNEMD 349
>gi|399517902|ref|ZP_10759437.1| Cold-shock DEAD-box protein A [Leuconostoc pseudomesenteroides
4882]
gi|398647213|emb|CCJ67464.1| Cold-shock DEAD-box protein A [Leuconostoc pseudomesenteroides
4882]
Length = 516
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 64/97 (65%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
EELA L + Y LHGD+ Q R+ V+ +FK E ILVATDVAARGLD+ + V
Sbjct: 253 EELARGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILVATDVAARGLDVKDVSHVY 312
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++ HRIGRTGRAG KGV+ T V + D
Sbjct: 313 NFDIPQDPESYVHRIGRTGRAGAKGVSVTFVAPNEMD 349
>gi|288556913|ref|YP_003428848.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
gi|288548073|gb|ADC51956.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
Length = 539
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 68/94 (72%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
EL +L + Y LHGD+ QS+R++V+ KF+ L+ATDVAARG+D+ ++ V+N
Sbjct: 254 ELTEALQARGYLADGLHGDLTQSQRDAVMKKFRDSSIEFLIATDVAARGIDVDNVTHVIN 313
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
YD+ +D +++ HRIGRTGRAG KG+A TLVT ++
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGRKGLALTLVTPRE 347
>gi|163859073|ref|YP_001633371.1| ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
gi|163262801|emb|CAP45104.1| putative ATP-dependent RNA helicase [Bordetella petrii]
Length = 584
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 70/107 (65%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + A++LA+ L + + LHGDM+Q +R +T+ +R + RILVATDVAAR
Sbjct: 248 AIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLTQLQRGQLRILVATDVAAR 307
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
G+D+ I VN+DL + + HRIGRTGRAG G AYTL T ++
Sbjct: 308 GIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRDGQAYTLATHAER 354
>gi|74835178|dbj|BAE44472.1| Vasa [Botryllus primigenus]
Length = 687
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/102 (50%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
NA+ LA L+ + +HGD Q ER +T FK+ +C IL+AT VAARGLDIP +
Sbjct: 497 NADFLATFLSQEGLPTTSIHGDRQQREREIALTDFKKGKCPILIATSVAARGLDIPKVEH 556
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGEL 147
V+NYDL +ID + HRIGRTGR GN G A + +D DK+ L
Sbjct: 557 VINYDLPSEIDEYVHRIGRTGRCGNLGSATSFYSD-DKNAAL 597
>gi|367002065|ref|XP_003685767.1| hypothetical protein TPHA_0E02410 [Tetrapisispora phaffii CBS 4417]
gi|357524066|emb|CCE63333.1| hypothetical protein TPHA_0E02410 [Tetrapisispora phaffii CBS 4417]
Length = 523
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 65/97 (67%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A + +L Y V +HGD+ Q +R + +FK +C +L+ATDVAARGLDIP+++TV
Sbjct: 372 ASRVERNLQYNGYQVAAIHGDLSQQQRTQALNEFKSGKCNLLLATDVAARGLDIPNVKTV 431
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+N ++ + HRIGRTGRAG G A+TL T+++K
Sbjct: 432 INLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEK 468
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEE 49
RAG G A+TL T+++K AG LV L GANQ VP L +E
Sbjct: 452 RAGQTGTAHTLFTEQEKHLAGGLVNILNGANQPVPEELKKFGTHTKKKE 500
>gi|126134609|ref|XP_001383829.1| ATP-dependent RNA helicase CA3 of the DEAD/DEAH box family
[Scheffersomyces stipitis CBS 6054]
gi|146286101|sp|A3LRW2.1|DBP3_PICST RecName: Full=ATP-dependent RNA helicase DBP3
gi|126095978|gb|ABN65800.1| ATP-dependent RNA helicase CA3 of the DEAD/DEAH box family
[Scheffersomyces stipitis CBS 6054]
Length = 526
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 79/130 (60%), Gaps = 1/130 (0%)
Query: 14 DKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSER 73
DK+K+ G L+R + +++ L+ + A + L Y+V +HGD+ Q +R
Sbjct: 343 DKEKKLLG-LLRQYQSGSKKNDKVLIFALYKKEATRIEGLLRRNSYNVAAIHGDLSQQQR 401
Query: 74 NSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGV 133
+ + FK+ E +L+ATDVAARGLDIP+++ V+N ++ + HRIGRTGRAG G
Sbjct: 402 TNALNSFKKGESSLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTGT 461
Query: 134 AYTLVTDKDK 143
A+TL T+ +K
Sbjct: 462 AHTLFTEHEK 471
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG G A+TL T+ +K +G L+ L GANQ VP L+
Sbjct: 455 RAGQTGTAHTLFTEHEKHLSGALMNILRGANQPVPDELLKFG 496
>gi|365539208|ref|ZP_09364383.1| ATP-dependent RNA helicase DbpA [Vibrio ordalii ATCC 33509]
Length = 461
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 68/95 (71%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ +A L K + V+ LHGD++Q +R+ + +F + ILVATDVAARGLD+ ++ V
Sbjct: 257 QSVAEDLHHKGFSVVELHGDLEQRDRDQALVQFANKSISILVATDVAARGLDVDNLDAVF 316
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N++L+RD + H HRIGRTGRAG+KG+A++ +D +
Sbjct: 317 NFELSRDPEVHVHRIGRTGRAGSKGLAFSFFSDSE 351
>gi|254469871|ref|ZP_05083276.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062]
gi|211961706|gb|EEA96901.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062]
Length = 476
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 63/94 (67%)
Query: 50 LANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109
L SL E+ V LHGDMDQ R +++ FK+ +ILVA+DVAARGLDIP + V N+
Sbjct: 261 LFRSLVRHEFSVGALHGDMDQRSRMTMLDNFKKGNIKILVASDVAARGLDIPSVSHVFNF 320
Query: 110 DLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
DL + + HRIGRTGRAG G A ++VT KD+
Sbjct: 321 DLPIQAEDYVHRIGRTGRAGRDGTAISIVTGKDE 354
>gi|170579138|ref|XP_001894695.1| ATP-dependent RNA helicase An3 [Brugia malayi]
gi|158598597|gb|EDP36460.1| ATP-dependent RNA helicase An3, putative [Brugia malayi]
Length = 754
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/98 (48%), Positives = 66/98 (67%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A +LA L Y+V+ +HGD+ Q +R + F+ ILVAT VAARGLDIP+++ V
Sbjct: 563 ASDLAYYLQKDGYNVVAIHGDLKQFDREKHLETFRSGVATILVATAVAARGLDIPNVKHV 622
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYDL DID + HRIGRTGR GN G+A + DK+++
Sbjct: 623 INYDLPSDIDEYVHRIGRTGRVGNVGLATSFFNDKNRN 660
>gi|295676852|ref|YP_003605376.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295436695|gb|ADG15865.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 544
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 75/117 (64%), Gaps = 5/117 (4%)
Query: 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
HL+R +G +Q A++ A +++A++LA L ++ LHGD+ Q RN I +
Sbjct: 293 HLLRA-DGLDQ----AIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTIRALR 347
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
+ R+LVATDVAARG+DIP I V NYDL + + + HRIGRTGRAG G+A +LV
Sbjct: 348 ERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSLV 404
>gi|260222162|emb|CBA31453.1| ATP-independent RNA helicase dbpA [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 460
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A N Q N EL + L + LHGD+DQ ER+ V+ +F + C +LVATDVA+R
Sbjct: 245 AFCNTKQQCN--ELVDKLVTDGFVAQALHGDLDQRERDQVLAQFANRSCSVLVATDVASR 302
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
GLD+ + V+N D+ D + H HRIGRTGRAG KG+A +L + ++
Sbjct: 303 GLDVKELDIVINVDITPDPEVHVHRIGRTGRAGEKGLAVSLASMRE 348
>gi|403238270|ref|ZP_10916856.1| DEAD/DEAH box helicase domain-containing protein [Bacillus sp.
10403023]
Length = 496
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 68/95 (71%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +LT++ Y +HGD+ Q++R SV+ KFK +LVATDVAARGLDI + V
Sbjct: 254 DELSEALTLRGYAAEGIHGDLSQAKRISVLRKFKEGSIEVLVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D +++ HRIGRTGRAG G+A T VT ++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKTGMAMTFVTPRE 348
>gi|374315479|ref|YP_005061907.1| DNA/RNA helicase [Sphaerochaeta pleomorpha str. Grapes]
gi|359351123|gb|AEV28897.1| DNA/RNA helicase, superfamily II [Sphaerochaeta pleomorpha str.
Grapes]
Length = 637
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 79/142 (55%), Gaps = 16/142 (11%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYD 60
R G+K A T + D +++F G L+ ++ +E+ L + YD
Sbjct: 227 REGDKFEALTRIIDMEEDFYG----------------LIFCRTKVQCDEIGQKLNARGYD 270
Query: 61 VLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTH 120
LHGD+ Q +R ++ K K + I+VATDVAARG+DI + V+NY L D +++ H
Sbjct: 271 AEPLHGDLSQKQRELILQKMKNRTISIVVATDVAARGIDISDLTHVINYSLPEDPESYIH 330
Query: 121 RIGRTGRAGNKGVAYTLVTDKD 142
R+GRTGRAG KGVA T V ++
Sbjct: 331 RVGRTGRAGKKGVAITFVGPRE 352
>gi|224060117|ref|XP_002300045.1| predicted protein [Populus trichocarpa]
gi|222847303|gb|EEE84850.1| predicted protein [Populus trichocarpa]
Length = 791
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/95 (51%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++L+ +LT +++ +HGD QSER+ V+++F+ ILVATDVAARGLDI IR V+
Sbjct: 424 DQLSRNLT-RQFGAAAIHGDKSQSERDYVLSQFRTGRSPILVATDVAARGLDIKDIRVVI 482
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD ++ + HRIGRTGRAG GVAYT D+D
Sbjct: 483 NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQD 517
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG GVAYT D+D + A L++ LEGANQ+VPP + ++A
Sbjct: 502 RAGATGVAYTFFGDQDAKHASDLIKVLEGANQQVPPEIRDMA 543
>gi|440731012|ref|ZP_20911059.1| ATP-dependent RNA helicase DbpA, partial [Xanthomonas translucens
DAR61454]
gi|440375413|gb|ELQ12122.1| ATP-dependent RNA helicase DbpA, partial [Xanthomonas translucens
DAR61454]
Length = 353
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A SL + L LHGDM+Q +R+ V+ +F + C +LVA+DVAARGLD+ + V+
Sbjct: 255 DEVAGSLQQFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLAAVL 314
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NY+L D +T+ HRIGRT RAG +G+A +LV ++
Sbjct: 315 NYELPTDTETYRHRIGRTARAGKRGLALSLVAPRE 349
>gi|268573672|ref|XP_002641813.1| C. briggsae CBR-INF-1 protein [Caenorhabditis briggsae]
Length = 402
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 66/96 (68%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
++L +T K++ V LHGDMDQ+ER++++ +F+ R+L+ TD+ ARG+D+ + V
Sbjct: 281 VDQLTEQMTSKQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLV 340
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+NYDL + + + HRIGR+GR G KGVA VT+ D
Sbjct: 341 INYDLPSNRENYIHRIGRSGRFGRKGVAINFVTEND 376
>gi|420449759|ref|ZP_14948625.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-45]
gi|393069076|gb|EJB69874.1| ATP-dependent RNA helicase [Helicobacter pylori Hp H-45]
Length = 492
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 66/104 (63%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R S I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + + + HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTENYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
>gi|374260671|ref|ZP_09619265.1| hypothetical protein LDG_5610 [Legionella drancourtii LLAP12]
gi|363538837|gb|EHL32237.1| hypothetical protein LDG_5610 [Legionella drancourtii LLAP12]
Length = 462
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 66/96 (68%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
+++ LT + +L+GDM+Q +R+ + +F + C ILVATDVAARGLDI + VVN
Sbjct: 259 QVSRQLTQAGFSATMLNGDMEQIDRDLAMIRFGNKSCSILVATDVAARGLDIKELPAVVN 318
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
Y+LA D+ H HRIGRTGRAG+KG+ + + T D +
Sbjct: 319 YELAFDLAVHIHRIGRTGRAGHKGLVFNITTPADAE 354
>gi|324506599|gb|ADY42814.1| Eukaryotic initiation factor 4A [Ascaris suum]
gi|324507947|gb|ADY43360.1| Eukaryotic initiation factor 4A [Ascaris suum]
Length = 415
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 66/93 (70%)
Query: 50 LANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109
LAN +T ++Y V +HGDM+QSER+ ++ +F+ R+L+ TD+ ARG+D+ + V+NY
Sbjct: 297 LANQMTKEKYTVSCMHGDMEQSERDLIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 356
Query: 110 DLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
DL + + + HRIGR+GR G KGVA VT++D
Sbjct: 357 DLPSNRENYIHRIGRSGRFGRKGVAINFVTEQD 389
>gi|404416449|ref|ZP_10998270.1| ATP-dependent RNA helicase [Staphylococcus arlettae CVD059]
gi|403491184|gb|EJY96708.1| ATP-dependent RNA helicase [Staphylococcus arlettae CVD059]
Length = 503
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALLTKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>gi|374331354|ref|YP_005081538.1| DEAD/DEAH box helicase [Pseudovibrio sp. FO-BEG1]
gi|359344142|gb|AEV37516.1| DEAD/DEAH box helicase domain protein [Pseudovibrio sp. FO-BEG1]
Length = 476
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 63/94 (67%)
Query: 50 LANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109
L SL E+ V LHGDMDQ R +++ FK+ +ILVA+DVAARGLDIP + V N+
Sbjct: 261 LFRSLVRHEFSVGALHGDMDQRSRMTMLDNFKKGNIKILVASDVAARGLDIPSVSHVFNF 320
Query: 110 DLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
DL + + HRIGRTGRAG G A ++VT KD+
Sbjct: 321 DLPIQAEDYVHRIGRTGRAGRDGTAISIVTGKDE 354
>gi|433460289|ref|ZP_20417922.1| DEAD/DEAH box helicase [Halobacillus sp. BAB-2008]
gi|432191745|gb|ELK48677.1| DEAD/DEAH box helicase [Halobacillus sp. BAB-2008]
Length = 470
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A+ L + + +HGD+ Q +R S + KFKR ILVATDVAARGLDI + V
Sbjct: 234 DEVADGLQARGFSAEGIHGDLTQGKRMSTLNKFKRGRIEILVATDVAARGLDISDVTHVY 293
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++ HRIGRTGRAG KG + + VT ++KD
Sbjct: 294 NFDIPQDPESYVHRIGRTGRAGRKGKSISFVTPREKD 330
>gi|410077537|ref|XP_003956350.1| hypothetical protein KAFR_0C02220 [Kazachstania africana CBS 2517]
gi|372462934|emb|CCF57215.1| hypothetical protein KAFR_0C02220 [Kazachstania africana CBS 2517]
Length = 511
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 76/121 (62%)
Query: 23 LVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82
L++ +G ++ L+ + A + +L YDV +HGD+ Q +R + FK+
Sbjct: 336 LLKKYQGGAKKNDKVLIFALYKKEAARVERNLRYNGYDVAAIHGDLSQQQRTQALNDFKQ 395
Query: 83 QECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+ +L+ATDVAARGLDIP+++TV+N ++ + HRIGRTGRAG GVA+TL T+++
Sbjct: 396 GKSSLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGVAHTLFTEQE 455
Query: 143 K 143
K
Sbjct: 456 K 456
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEE 49
RAG GVA+TL T+++K AG LV L GANQ VP L+ +E
Sbjct: 440 RAGQTGVAHTLFTEQEKHLAGALVNVLNGANQPVPEDLIKFGTHTKKKE 488
>gi|334310946|ref|XP_001370541.2| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
[Monodelphis domestica]
Length = 1179
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 55/130 (42%), Positives = 78/130 (60%), Gaps = 2/130 (1%)
Query: 11 LVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQ 70
+V +++ +F L L G QE ++ + Q +A+ L L Y + LHG +DQ
Sbjct: 746 IVIEEENKFLKLL--ELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQ 803
Query: 71 SERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130
+R+S+I FK C++LVAT VAARGLD+ H+ VVNY + + HR GRTGRAGN
Sbjct: 804 YDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGN 863
Query: 131 KGVAYTLVTD 140
KG AYT +T+
Sbjct: 864 KGYAYTFITE 873
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKE 58
RAGNKG AYT +T+ +AG +++ LE + VP L L ++ A +K+
Sbjct: 860 RAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPHDLEKLWSDFKDQQKAEGKIIKK 917
>gi|134299771|ref|YP_001113267.1| DEAD/DEAH box helicase [Desulfotomaculum reducens MI-1]
gi|134052471|gb|ABO50442.1| ATP-dependent RNA helicase DbpA [Desulfotomaculum reducens MI-1]
Length = 532
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 66/96 (68%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
+EL L + + LHGD+ Q +RN+V+ +F+ E +LVATDVAARGLDI + V
Sbjct: 259 VDELVAGLQARGFAAAALHGDLSQQQRNTVMRQFRSSEVELLVATDVAARGLDIEGVSHV 318
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+NYD+ +D + + HRIGRTGRAG GVA T+++ ++
Sbjct: 319 INYDIPQDPEFYVHRIGRTGRAGRSGVAITIISPRE 354
>gi|346322147|gb|EGX91746.1| DEAD/DEAH box RNA helicase [Cordyceps militaris CM01]
Length = 1216
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 72/122 (59%), Gaps = 5/122 (4%)
Query: 18 EFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVI 77
E G L N E A L+ + Q A++L L VK Y + +HG DQ +R+S I
Sbjct: 819 ELLGELYENDEDAR-----TLIFVERQEKADDLLKELMVKGYPCMSIHGGKDQIDRDSTI 873
Query: 78 TKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTL 137
+ FK+ IL+AT VAARGLD+ ++ V+NYD ++ + HR GRTGRAGN GVA T
Sbjct: 874 SDFKKGVVPILIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAVTF 933
Query: 138 VT 139
+T
Sbjct: 934 IT 935
>gi|336452449|ref|YP_004606915.1| cold-shock DEAD-box protein A [Helicobacter bizzozeronii CIII-1]
gi|335332476|emb|CCB79203.1| cold-shock DEAD-box protein A [Helicobacter bizzozeronii CIII-1]
Length = 470
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 70/114 (61%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
+++ + M+ +EL L+ K Y LHGDM+Q R I FK + +LVATDVA+R
Sbjct: 259 SIIFMRMKREVDELHQFLSAKGYKSTPLHGDMEQRARRESIQAFKTKRADVLVATDVASR 318
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
GLDI + V NY L + +++ HRIGRTGRAG KGVA TLVT + LR Q
Sbjct: 319 GLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGVAITLVTPLEYKELLRMQ 372
>gi|336309957|ref|ZP_08564930.1| ATP-dependent RNA helicase DbpA [Shewanella sp. HN-41]
gi|335866517|gb|EGM71495.1| ATP-dependent RNA helicase DbpA [Shewanella sp. HN-41]
Length = 469
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 65/95 (68%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+++A+ L + VL LHGD++Q +R+ + +F + +LVATDVAARGLDI + V
Sbjct: 265 QKVADELEALGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALDAVF 324
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NY +A D + H HR+GRTGRAG+KG AYT D+D
Sbjct: 325 NYHVAYDTEVHIHRVGRTGRAGSKGAAYTFYNDQD 359
>gi|91794299|ref|YP_563950.1| ATP-dependent RNA helicase DbpA [Shewanella denitrificans OS217]
gi|91716301|gb|ABE56227.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 470
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 65/95 (68%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+++A+ L + VL LHGD++Q +R+ ++ +F Q RILVATDVAARGLDI + V
Sbjct: 267 QQVADELAEFGFSVLALHGDLEQRDRDQMLLQFANQSARILVATDVAARGLDIDALDAVF 326
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+ LA D + H HRIGRTGRAG+ G AY+ + D
Sbjct: 327 NFHLAYDAEVHLHRIGRTGRAGSTGAAYSFIGHDD 361
>gi|351708460|gb|EHB11379.1| Putative ATP-dependent RNA helicase DDX46 [Heterocephalus glaber]
Length = 1255
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/112 (45%), Positives = 69/112 (61%)
Query: 29 GANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRIL 88
G QE ++ + Q +A+ L L Y + LHG +DQ +R+S+I FK C++L
Sbjct: 885 GHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 944
Query: 89 VATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
VAT VAARGLD+ H+ VVNY + + HR GRTGRAGNKG AYT +T+
Sbjct: 945 VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITE 996
Score = 43.1 bits (100), Expect = 0.035, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKE 58
RAGNKG AYT +T+ +AG +++ LE + VPP L L ++ A +K+
Sbjct: 983 RAGNKGYAYTFITEDQARYAGDIIKALELSGTVVPPDLEKLWSDFKDQQKAEGKIIKK 1040
>gi|325280019|ref|YP_004252561.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
splanchnicus DSM 20712]
gi|324311828|gb|ADY32381.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
20712]
Length = 594
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ +++A E+A L D LHGD+ Q++R+ V+ +F+ + ++LVATDVAAR
Sbjct: 245 AIIFTRTKMDAREIARKLQKDGIDCDALHGDLSQAQRDDVMDRFRAKRLKVLVATDVAAR 304
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELR 148
GLD+ ++ V+NY+L D++++THR GRTGRAG +G++ ++ K+K G+LR
Sbjct: 305 GLDVDNLTHVINYNLPEDVESYTHRSGRTGRAGREGISVAIINSKEK-GKLR 355
>gi|445497982|ref|ZP_21464837.1| ATP-independent RNA helicase DbpA [Janthinobacterium sp. HH01]
gi|444787977|gb|ELX09525.1| ATP-independent RNA helicase DbpA [Janthinobacterium sp. HH01]
Length = 469
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 66/100 (66%)
Query: 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
++ EL L K + + L+G+++Q ER+ ++ F + C +LVATDVAARGLDIP++
Sbjct: 252 KVQCRELVEELQSKGFSAMALYGELEQKERDEILVLFSNRSCSVLVATDVAARGLDIPNL 311
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
V+N D+++D + H HRIGRTGR +G+A +L +K
Sbjct: 312 EAVINVDVSKDTEVHIHRIGRTGRGTEQGLALSLCAPNEK 351
>gi|113868657|ref|YP_727146.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
gi|113527433|emb|CAJ93778.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
Length = 646
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 66/106 (62%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA L+ + LHGDM Q RN +T +R R+LVATDVAAR
Sbjct: 322 AIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVATDVAAR 381
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG G A LV D
Sbjct: 382 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGTAINLVNHND 427
>gi|256821842|ref|YP_003145805.1| DEAD/DEAH box helicase [Kangiella koreensis DSM 16069]
gi|256795381|gb|ACV26037.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
16069]
Length = 460
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 65/98 (66%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ ++L L + VL LHGD++Q ER+ + +F I+VATDVAARGLDI +
Sbjct: 255 HVKDLTQELKRHGFSVLALHGDLEQKERDQALIRFANNSVSIMVATDVAARGLDIDSLDL 314
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
V+NY +A D + H HRIGRTGRAGNKG A ++V K+K
Sbjct: 315 VINYHIASDPEIHVHRIGRTGRAGNKGHACSIVISKEK 352
>gi|109896916|ref|YP_660171.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas atlantica T6c]
gi|109699197|gb|ABG39117.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas atlantica T6c]
Length = 459
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 68/102 (66%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ ++ +E+A+ L VL LHGD++Q ERN V+ +F + +LVATDVA+R
Sbjct: 244 AIVFCNTKIACQEVADELQSMGVSVLALHGDLEQRERNQVLVRFANKSASVLVATDVASR 303
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
GLDI + V++Y + D + H HRIGRTGRA +KGVA TLV
Sbjct: 304 GLDIKEVNAVISYHITPDPEVHIHRIGRTGRAESKGVALTLV 345
>gi|402078084|gb|EJT73433.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 1218
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 69/108 (63%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ + Q A+EL L K + + LHG DQ +R+S I+ FK C IL+AT VAAR
Sbjct: 842 ALVFVERQEKADELLRELLHKGWGCMSLHGGKDQVDRDSTISDFKSGVCPILIATSVAAR 901
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
GLD+ ++ VVNYD ++ + HR GRTGRAGN G A T +T++ ++
Sbjct: 902 GLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEN 949
>gi|170039965|ref|XP_001847786.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167863566|gb|EDS26949.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 942
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ +V ++D +F L L G QE+ ++ + Q NA+ L L Y + LHG +
Sbjct: 505 HVVVLEEDAKFFKLL--ELLGLYQELGSIIVFVDKQENADILLKDLMKASYPCMSLHGGI 562
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
DQ +R+S I FK+ ++L+AT VAARGLD+ + VVNYD + + HR GRTGRA
Sbjct: 563 DQFDRDSTIIDFKQGRVKLLIATSVAARGLDVKQLILVVNYDCPNHYEDYVHRCGRTGRA 622
Query: 129 GNKGVAYTLVT 139
GNKG A+T +T
Sbjct: 623 GNKGFAWTFLT 633
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNL 41
RAGNKG A+T +T + ++G ++R LE + +P L L
Sbjct: 621 RAGNKGFAWTFLTHEQGRYSGDIIRALELSGGTIPDDLRQL 661
>gi|430806402|ref|ZP_19433517.1| ATP-dependent RNA helicase DbpA [Cupriavidus sp. HMR-1]
gi|429501352|gb|EKZ99690.1| ATP-dependent RNA helicase DbpA [Cupriavidus sp. HMR-1]
Length = 438
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 64/91 (70%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
+LA+ L + Y L LHGD++Q +R+ V+ +F + C +LVATDVAARGLDI + V+N
Sbjct: 231 DLADLLRAQGYAALELHGDLEQRDRDQVLVQFANRSCSVLVATDVAARGLDIAQLEAVIN 290
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
D+ D + H HR+GRTGRAG G A++LV+
Sbjct: 291 VDVTPDPEVHVHRVGRTGRAGEAGSAFSLVS 321
>gi|345889425|ref|ZP_08840430.1| hypothetical protein HMPREF0178_03204 [Bilophila sp. 4_1_30]
gi|345039614|gb|EGW43936.1| hypothetical protein HMPREF0178_03204 [Bilophila sp. 4_1_30]
Length = 594
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 74/107 (69%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ A + + +E+ L + Y LHGDM+Q++R+ V+++F+ ILVATDVAAR
Sbjct: 244 ALVFCATKRSVDEITVHLQQRGYQADGLHGDMNQTQRDRVMSRFRTDGIEILVATDVAAR 303
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
G+D+ + V+NYD+ D++ + HRIGRTGRAG +G A+T VT +++
Sbjct: 304 GIDVDDVDAVINYDIPHDVEGYVHRIGRTGRAGREGKAFTFVTVREQ 350
>gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281105|gb|ABR89515.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 466
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 76/117 (64%), Gaps = 5/117 (4%)
Query: 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
HL+R+ E +Q A++ A + +A+ +A+ L + + LHGDM Q RN + +
Sbjct: 261 HLLRD-ETMDQ----AVVFTATKRDADTIADRLNIAGFAAAALHGDMHQGARNRTLDGLR 315
Query: 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138
R + R+LVATDVAARG+D+P I VVNYDL + + + HRIGRTGRAG G+A +LV
Sbjct: 316 RGQIRVLVATDVAARGIDVPGITHVVNYDLPKFPEDYVHRIGRTGRAGRNGIAVSLV 372
>gi|93006205|ref|YP_580642.1| DEAD/DEAH box helicase [Psychrobacter cryohalolentis K5]
gi|92393883|gb|ABE75158.1| DEAD/DEAH box helicase-like protein [Psychrobacter cryohalolentis
K5]
Length = 552
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 71/114 (62%)
Query: 30 ANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILV 89
Q++ ++ A + + E+LA L + LHGD+ QS+RN ++ + + +ILV
Sbjct: 274 CQQDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKVKILV 333
Query: 90 ATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
ATDVAARGLDIP I V+NYDL R + + HRIGR GRAG G+A +L + D+
Sbjct: 334 ATDVAARGLDIPAISHVINYDLPRQTEDYVHRIGRCGRAGRTGIAISLCSMDDR 387
>gi|421882169|ref|ZP_16313452.1| Cold-shock DEAD-box protein A [Helicobacter bizzozeronii CCUG
35545]
gi|375315618|emb|CCF81448.1| Cold-shock DEAD-box protein A [Helicobacter bizzozeronii CCUG
35545]
Length = 434
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 70/114 (61%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
+++ + M+ +EL L+ K Y LHGDM+Q R I FK + +LVATDVA+R
Sbjct: 223 SIIFMRMKREVDELHQFLSAKGYKSTPLHGDMEQRARRESIQAFKTKRADVLVATDVASR 282
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
GLDI + V NY L + +++ HRIGRTGRAG KGVA TLVT + LR Q
Sbjct: 283 GLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGVAITLVTPLEYKELLRMQ 336
>gi|317485703|ref|ZP_07944574.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
gi|316923068|gb|EFV44283.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
Length = 594
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 74/107 (69%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ A + + +E+ L + Y LHGDM+Q++R+ V+++F+ ILVATDVAAR
Sbjct: 244 ALVFCATKRSVDEITVHLQQRGYQADGLHGDMNQTQRDRVMSRFRTDGIEILVATDVAAR 303
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
G+D+ + V+NYD+ D++ + HRIGRTGRAG +G A+T VT +++
Sbjct: 304 GIDVDDVDAVINYDIPHDVEGYVHRIGRTGRAGREGKAFTFVTVREQ 350
>gi|207340598|gb|EDZ68898.1| YPL119Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 303
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 65/98 (66%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A++L + L ++ + +HGD Q+ER ++ FK ILVAT VAARGLDIP++ V
Sbjct: 110 ADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHV 169
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYDL DID + HRIGRTGRAGN GVA + +++
Sbjct: 170 INYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQN 207
>gi|344228675|gb|EGV60561.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 540
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/96 (50%), Positives = 64/96 (66%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
EEL++SL K Y + +HG Q R I +F+ RILVATDVAARG+DI ++ VV
Sbjct: 418 EELSDSLAEKGYKNITIHGSKSQQARERSIDEFRNGRVRILVATDVAARGIDIANVSLVV 477
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
NY + + +D + HRIGRTGRAG KG +YT + D D+
Sbjct: 478 NYQMTKRVDEYIHRIGRTGRAGTKGNSYTFIEDGDE 513
>gi|341877658|gb|EGT33593.1| hypothetical protein CAEBREN_13034 [Caenorhabditis brenneri]
Length = 689
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 66/98 (67%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A +LA L + Y V+ +HGD+ Q ER + F+ ILVAT VAARGLDIP+++ V
Sbjct: 492 ASDLAYYLGRQNYQVVTIHGDLKQFEREKHLDLFRTGVAPILVATAVAARGLDIPNVKHV 551
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYDL D+D + HRIGRTGR GN G+A + DK+++
Sbjct: 552 INYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRN 589
>gi|294462365|gb|ADE76731.1| unknown [Picea sitchensis]
Length = 236
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 71/112 (63%), Gaps = 2/112 (1%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + A + + L + ++V+ +HGD Q +R +T FK +C +L+ATDVAARG
Sbjct: 70 LVFVLYKKEAVRVESMLQRRGWNVVAVHGDKSQHDRTKAVTLFKDGKCPLLIATDVAARG 129
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT--DKDKDGEL 147
LDIP + V+NY + + HRIGRTGRAG KGVA+T T DK + GEL
Sbjct: 130 LDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQADKARSGEL 181
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEE 49
RAG KGVA+T T DK +G LV L A Q VP L+ + +E
Sbjct: 159 RAGKKGVAHTFFTQADKARSGELVNVLREAGQVVPDDLLKFGTHVKKKE 207
>gi|357478017|ref|XP_003609294.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355510349|gb|AES91491.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 671
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 73/120 (60%), Gaps = 2/120 (1%)
Query: 23 LVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82
L RN+ N ++ L+ + + A+ L N L + + +HGD Q ER + FKR
Sbjct: 392 LRRNV--VNGKLALTLVFVETKKGADALENWLCRINFPAIAIHGDKVQMERERALRSFKR 449
Query: 83 QECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
I+VATDVA+RGLDIPH+ V+N+DL RDID + HRIGRTGRAG G+A + K+
Sbjct: 450 GLTPIMVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGQSGLATAFFSTKN 509
>gi|339326701|ref|YP_004686394.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
gi|338166858|gb|AEI77913.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
Length = 656
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 66/106 (62%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + +A+ LA L+ + LHGDM Q RN +T +R R+LVATDVAAR
Sbjct: 322 AIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVATDVAAR 381
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
G+D+P I VVN+DL + + + HRIGRTGRAG G A LV D
Sbjct: 382 GIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGTAINLVNHND 427
>gi|402298055|ref|ZP_10817779.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
gi|401726699|gb|EJS99915.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
Length = 534
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 68/94 (72%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
EL +L + Y LHGD+ QS+R+SV+ KF+ L+ATDVAARG+D+ ++ V+N
Sbjct: 254 ELTEALQARGYLADGLHGDLTQSQRDSVMKKFRDSSIEFLIATDVAARGIDVDNVTHVIN 313
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
YD+ +D +++ HRIGRTGRAG +G+A TLVT ++
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGRQGLALTLVTPRE 347
>gi|18410973|ref|NP_567067.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
gi|42572719|ref|NP_974455.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
gi|79315530|ref|NP_001030884.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
gi|75329861|sp|Q8LA13.1|RH11_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 11
gi|21593670|gb|AAM65637.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
gi|332646270|gb|AEE79791.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
gi|332646271|gb|AEE79792.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
gi|332646272|gb|AEE79793.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
Length = 612
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/96 (51%), Positives = 60/96 (62%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+ L N L + E+ +HGD Q ER + FK ILVATDVAARGLDIPH+ V
Sbjct: 421 ADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHV 480
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VN+DL DID + HRIGRTGRAG G+A + +
Sbjct: 481 VNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENN 516
>gi|88803270|ref|ZP_01118796.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
gi|88780836|gb|EAR12015.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
Length = 609
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 72/101 (71%), Gaps = 1/101 (0%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+E+A++L Y LHGD+ Q +R+SV+ KF+++ +ILVATDVAARGLD+ + V+
Sbjct: 256 QEVADNLIKDGYSADALHGDLSQGQRDSVMGKFRKKTIQILVATDVAARGLDVTELTHVI 315
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELR 148
N+ L I+ +THR GRTGRAGN G++ LV K+K G+LR
Sbjct: 316 NHKLPDQIENYTHRSGRTGRAGNTGISIVLVNGKEK-GKLR 355
>gi|187476686|ref|YP_784709.1| ATP-dependent RNA helicase [Bordetella avium 197N]
gi|115421272|emb|CAJ47777.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
Length = 592
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 71/107 (66%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ A + A++LA+ L+ + + LHGDM+Q +R +T+ +R + R+LVATDVAAR
Sbjct: 248 AIVFTATKRGADDLADRLSEQGFSAAALHGDMNQRQRTRTLTQLQRGQVRVLVATDVAAR 307
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
G+D+ I VN+DL + + HRIGRTGRAG G+AYTL ++
Sbjct: 308 GIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGLAYTLAVHSER 354
>gi|402594791|gb|EJW88717.1| hypothetical protein WUBG_00370, partial [Wuchereria bancrofti]
Length = 749
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/98 (48%), Positives = 66/98 (67%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A +LA L Y+V+ +HGD+ Q +R + F+ ILVAT VAARGLDIP+++ V
Sbjct: 563 ASDLAYYLQKDGYNVVAIHGDLKQFDREKHLETFRSGVATILVATAVAARGLDIPNVKHV 622
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYDL DID + HRIGRTGR GN G+A + DK+++
Sbjct: 623 INYDLPSDIDEYVHRIGRTGRVGNVGLATSFFNDKNRN 660
>gi|323352003|gb|EGA84542.1| Dbp1p [Saccharomyces cerevisiae VL3]
Length = 551
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 47/98 (47%), Positives = 65/98 (66%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A++L + L ++ + +HGD Q+ER ++ FK ILVAT VAARGLDIP++ V
Sbjct: 358 ADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHV 417
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYDL DID + HRIGRTGRAGN GVA + +++
Sbjct: 418 INYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQN 455
>gi|443735051|gb|ELU18906.1| hypothetical protein CAPTEDRAFT_180220 [Capitella teleta]
Length = 651
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 55/139 (39%), Positives = 79/139 (56%), Gaps = 5/139 (3%)
Query: 12 VTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQS 71
V DK+ + N GA++ L+ + + A+ LA+ L+ E+ +HGD Q
Sbjct: 434 VAQHDKKSKLEEILNESGADR----TLVFVEKKRQADYLASYLSQSEFPTTSIHGDRQQR 489
Query: 72 ERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNK 131
ER + FK +C ILVAT VAARGLDIP ++ V+N+D DID + HRIGRTGR GN
Sbjct: 490 EREEALRDFKSGKCPILVATSVAARGLDIPGVKHVINFDFPSDIDEYVHRIGRTGRCGNM 549
Query: 132 GVAYTLVTDKDKDGELRSQ 150
G A + + + D ++ Q
Sbjct: 550 GKASSFF-NPESDAQVARQ 567
>gi|149183244|ref|ZP_01861688.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
gi|148849040|gb|EDL63246.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
Length = 470
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +LT++ Y +HGD+ Q++R +V+ +FK +LVATDVAARGLDI + V
Sbjct: 235 DELARALTLRGYSAEGIHGDLSQAKRMTVLRQFKEGRIDVLVATDVAARGLDISGVTHVY 294
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D +++ HRIGRTGRAG +G+A T VT ++
Sbjct: 295 NFDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPRE 329
>gi|414155170|ref|ZP_11411485.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411453220|emb|CCO09389.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 532
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 65/95 (68%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL L + Y LHGD+ Q +RN+V+ +F+ E +LVATDVAARGLDI + V+
Sbjct: 260 DELVAGLQARGYTAAALHGDLSQQQRNNVMRQFRSGEVELLVATDVAARGLDIEGVSHVI 319
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD+ +D + + HRIGRTGRAG GVA T++ ++
Sbjct: 320 NYDIPQDPEFYVHRIGRTGRAGRSGVAITIINPRE 354
>gi|403385798|ref|ZP_10927855.1| ATP-dependent RNA helicase exp9 [Kurthia sp. JC30]
Length = 511
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 70/95 (73%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+++L+++ Y +HGD+ Q++R SV+ +FK + +LVATDVAARGLDI + V
Sbjct: 254 DELSHALSIRGYIAEGIHGDLSQAKRLSVLRQFKENKIDVLVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D +++ HRIGRTGRAG GVA T VT ++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKSGVAVTFVTPRE 348
>gi|400287158|ref|ZP_10789190.1| DEAD/DEAH box helicase [Psychrobacter sp. PAMC 21119]
Length = 555
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 71/114 (62%)
Query: 30 ANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILV 89
Q++ ++ A + + E+LA L + LHGD+ QS+RN ++ + + +ILV
Sbjct: 276 CQQDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKIKILV 335
Query: 90 ATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
ATDVAARGLDIP I V+NYDL R + + HRIGR GRAG G+A +L + D+
Sbjct: 336 ATDVAARGLDIPAISHVINYDLPRQTEDYVHRIGRCGRAGRTGIAISLCSMDDR 389
>gi|392572621|gb|EIW65766.1| hypothetical protein TREMEDRAFT_46029 [Tremella mesenterica DSM
1558]
Length = 558
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 11 LVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQ 70
+ T+ DK ++++LE +QE L+ + + A++L L + L +HGD Q
Sbjct: 354 ICTNYDKR--NMMLKHLEQISQENAKVLIFVGTKRVADDLTKHLRTDGWPALAIHGDKQQ 411
Query: 71 SERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130
ER+ V+++FK I++ATDVA+RG+D+ I+ V+NYD + + + HRIGRTGRAG
Sbjct: 412 GERDWVLSEFKSGRSPIMIATDVASRGIDVRDIKYVINYDFPNNCEDYVHRIGRTGRAGQ 471
Query: 131 KGVAYTLVT 139
G AYT T
Sbjct: 472 TGTAYTFFT 480
>gi|156307425|ref|XP_001617631.1| hypothetical protein NEMVEDRAFT_v1g225926 [Nematostella vectensis]
gi|156194922|gb|EDO25531.1| predicted protein [Nematostella vectensis]
Length = 262
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 75/126 (59%), Gaps = 3/126 (2%)
Query: 14 DKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSER 73
DK++ + R LE E A N + A LA L + Y L LHGD++Q +R
Sbjct: 26 DKEERLPS-VARLLEHFRPESTLAFCNTKARCRA--LAELLQAQGYSALELHGDLEQRDR 82
Query: 74 NSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGV 133
+ V+ +F C +LVATDVAARGLD+ ++ V+N D+ D + H HRIGRTGRAG KG+
Sbjct: 83 DQVLVRFVNGSCSVLVATDVAARGLDVTNLGAVINVDITPDPEVHVHRIGRTGRAGQKGL 142
Query: 134 AYTLVT 139
A +L T
Sbjct: 143 ALSLAT 148
>gi|358391439|gb|EHK40843.1| hypothetical protein TRIATDRAFT_286438 [Trichoderma atroviride IMI
206040]
Length = 722
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 87/147 (59%), Gaps = 5/147 (3%)
Query: 3 GNKGVAYTLVTDKDKEFAGH-----LVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK 57
GN G A V + + +G ++ + G+ PP ++ + ++ N + +A +
Sbjct: 519 GNAGEAVDTVEQRVEFISGEDRRKKRLQEILGSAAYAPPIIVFVNIKRNCDAVARDIKSM 578
Query: 58 EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDT 117
+ V+ LHG Q +R + + + + ++LVATD+A RG+D+P + V+N+++A +I++
Sbjct: 579 GWSVVTLHGSKTQEQREAALASVRSGQSQVLVATDLAGRGIDVPDVSLVINFNMATNIES 638
Query: 118 HTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+THRIGRTGRAG GVA T + ++D D
Sbjct: 639 YTHRIGRTGRAGKSGVAITFLGNEDSD 665
>gi|344174090|emb|CCA85871.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal)(rhlE-like) [Ralstonia syzygii
R24]
Length = 658
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 54/126 (42%), Positives = 76/126 (60%), Gaps = 5/126 (3%)
Query: 17 KEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSV 76
++ HL+R+ + A++ A + +A+ LA LT + LHGDM Q RN
Sbjct: 335 QQLLDHLLRD-----ATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNRT 389
Query: 77 ITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYT 136
+T +R + R+LVATDVAARG+D+P I VVN+DL + + + HRIGRTGRAG G+A
Sbjct: 390 LTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAIN 449
Query: 137 LVTDKD 142
LV D
Sbjct: 450 LVNHGD 455
>gi|377831050|ref|ZP_09814038.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus mucosae
LM1]
gi|377555147|gb|EHT16838.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus mucosae
LM1]
Length = 495
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 65/97 (67%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ LT + Y+ +HGD+ Q R ++ +FK + ILVATDVAARGLDI + V
Sbjct: 246 DELSKGLTARGYNAAGIHGDLTQDRRTKIMKRFKEGKLDILVATDVAARGLDISGVTHVY 305
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
NYD+ D D++ HRIGRTGRAG+ GV+ T VT + D
Sbjct: 306 NYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMD 342
>gi|297571406|ref|YP_003697180.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
gi|296931753|gb|ADH92561.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
DSM 20595]
Length = 620
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
Y +V + K G L R L A E AL+ + + AE+LA L+ + L GD+
Sbjct: 223 YAVVPTRHK--IGALARVL--ATTEADAALVFVRTRATAEDLAIELSTRGVQAAALSGDV 278
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
Q +R ++ + ++ +LVATDVAARGLD+ I VVN+D+ R+++T+ HRIGRTGRA
Sbjct: 279 AQKDREKLVDRLRQGSIDVLVATDVAARGLDVERIGLVVNFDIPREVETYVHRIGRTGRA 338
Query: 129 GNKGVAYTLVTDKDK 143
G +G A + VT K+K
Sbjct: 339 GREGTALSFVTPKEK 353
>gi|119475471|ref|ZP_01615824.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2143]
gi|119451674|gb|EAW32907.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2143]
Length = 459
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 61/80 (76%)
Query: 64 LHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIG 123
+HGD++Q +R+ V+ +F C +LVATDVAARGLDI + V+N++L R+ D + HRIG
Sbjct: 271 IHGDLEQRDRDQVLIQFANHSCSLLVATDVAARGLDIEDLPAVINFELPREADVYIHRIG 330
Query: 124 RTGRAGNKGVAYTLVTDKDK 143
RTGRAG +G+A++L TD +K
Sbjct: 331 RTGRAGKEGLAFSLFTDSEK 350
>gi|319937469|ref|ZP_08011874.1| helicase [Coprobacillus sp. 29_1]
gi|319807309|gb|EFW03918.1| helicase [Coprobacillus sp. 29_1]
Length = 520
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 46/99 (46%), Positives = 72/99 (72%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ +E+ S+ K YDV +HGD+ Q++R + + +FK + LVATDVAARG+D+ +I
Sbjct: 255 SVDEVVASMQQKHYDVEAMHGDLSQNQRTNTLKRFKSGHIQYLVATDVAARGIDVDNISH 314
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
V+NY++ +D + + HRIGRTGRA KG AY+LVT+++K+
Sbjct: 315 VINYEMPQDEELYIHRIGRTGRANKKGEAYSLVTNREKN 353
>gi|294142025|ref|YP_003558003.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 427
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 81/135 (60%), Gaps = 5/135 (3%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
Y + +D+ HL+ + G Q+V L+ +L A++LA +LT HGD+
Sbjct: 242 YAVDSDRKLALVTHLIES--GNLQQV---LIFSRKKLAADKLAANLTKAGISAQAFHGDL 296
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
Q R V+ FK E R+LVATDVAARG+DI + V+NY+L + + HRIGRTGRA
Sbjct: 297 SQGAREKVLQGFKDGEVRVLVATDVAARGIDIIDLNYVINYELPYKAEDYVHRIGRTGRA 356
Query: 129 GNKGVAYTLVTDKDK 143
GNKG+A TL+ +D+
Sbjct: 357 GNKGLAITLLCSEDE 371
>gi|239831816|ref|ZP_04680145.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
gi|239824083|gb|EEQ95651.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
Length = 484
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 66/97 (68%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ EL SLT E++ LHGDMDQ R ++++ FK + ++LVA+DVAARGLDIP +
Sbjct: 259 DVSELFRSLTRHEFNAGALHGDMDQRARMTMLSNFKDGKLQLLVASDVAARGLDIPDVSH 318
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V N+D+ + + HRIGRTGRAG G A+T+VT D
Sbjct: 319 VFNFDIPIHSEDYVHRIGRTGRAGRSGKAFTIVTPSD 355
>gi|228989414|ref|ZP_04149403.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
DSM 12442]
gi|228770361|gb|EEM18936.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
DSM 12442]
Length = 528
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +L ++ Y +HGD+ Q++R SV+ KFK +LVATDVAARGLDI + V
Sbjct: 254 DELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRS 149
N+D+ +D +++ HRIGRTGRAG KG+A VT ++ G+L++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE-SGQLKN 354
>gi|228995609|ref|ZP_04155275.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
Rock3-17]
gi|228764181|gb|EEM13062.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
Rock3-17]
Length = 536
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +L ++ Y +HGD+ Q++R SV+ KFK +LVATDVAARGLDI + V
Sbjct: 254 DELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRS 149
N+D+ +D +++ HRIGRTGRAG KG+A VT ++ G+L++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE-SGQLKN 354
>gi|390944989|ref|YP_006408750.1| DNA/RNA helicase [Belliella baltica DSM 15883]
gi|390418417|gb|AFL85995.1| DNA/RNA helicase, superfamily II [Belliella baltica DSM 15883]
Length = 591
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 78/143 (54%), Gaps = 18/143 (12%)
Query: 24 VRNLEGANQEVPPAL----MNLAMQLN--------------AEELANSLTVKEYDVLLLH 65
V N+ A EV P+L M M+LN +E+ SL K LH
Sbjct: 216 VENISQAYYEVRPSLRIELMVRLMELNQFKLSVVFCNTKRSTDEVTESLISKGIMAEALH 275
Query: 66 GDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRT 125
GD+ Q++R V+ KF++ C +LVATDVAARG+D+ + V NYDL D + + HRIGRT
Sbjct: 276 GDLSQAQRTKVMNKFRKGTCSVLVATDVAARGIDVDDVEAVFNYDLPLDEENYVHRIGRT 335
Query: 126 GRAGNKGVAYTLVTDKDKDGELR 148
GRAG G+A + VT + LR
Sbjct: 336 GRAGKSGMALSFVTGRKDTYRLR 358
>gi|433653854|ref|YP_007297562.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292043|gb|AGB17865.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 514
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 69/96 (71%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
+EL ++ + Y+V +HGDM Q++R + + KFK LVATDVAARG+DI ++ V
Sbjct: 253 VDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILDFLVATDVAARGIDIENVTHV 312
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+NY+L +D++++ HRIGRTGRA GVAYTLVT ++
Sbjct: 313 INYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSRE 348
>gi|270158633|ref|ZP_06187290.1| ATP-independent RNA helicase DbpA [Legionella longbeachae D-4968]
gi|289166549|ref|YP_003456687.1| ATP-dependent RNA helicase [Legionella longbeachae NSW150]
gi|269990658|gb|EEZ96912.1| ATP-independent RNA helicase DbpA [Legionella longbeachae D-4968]
gi|288859722|emb|CBJ13695.1| putative ATP-dependent RNA helicase [Legionella longbeachae NSW150]
Length = 470
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 65/94 (69%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
E+ + L + + + L+GDM+Q +R+ + +F C ILVATDVAARGLDI + TV+N
Sbjct: 265 EVTDLLIEEGFSAIALNGDMEQVDRDLAVLRFANHSCSILVATDVAARGLDIKELSTVIN 324
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+DLA D + H HRIGRTGRAG KG+A ++ T D
Sbjct: 325 FDLAFDHEVHIHRIGRTGRAGCKGIALSITTPAD 358
>gi|240013980|ref|ZP_04720893.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18]
gi|240121547|ref|ZP_04734509.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1]
Length = 462
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 60/90 (66%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
E +A+ L K + LHGDM Q RN +T ++ C+ILVATDVAARG+DIP I V+
Sbjct: 260 EVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDVAARGIDIPTITHVI 319
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTL 137
NYDL + + + HRIGRTGRAG G+A T
Sbjct: 320 NYDLPKQAEDYVHRIGRTGRAGRTGIAITF 349
>gi|209964196|ref|YP_002297111.1| DEAD/DEAH box helicase [Rhodospirillum centenum SW]
gi|209957662|gb|ACI98298.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
Length = 528
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 73/110 (66%)
Query: 30 ANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILV 89
+E ++ +A +L+A+ LA++L+ K + + LHGDM Q +RN V+ + ++V
Sbjct: 248 GGEEFGKGIVFIATKLDADRLADTLSEKGHKAMPLHGDMQQRDRNRVVQWLRDGRINVIV 307
Query: 90 ATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139
ATDVAARG+DI + V+N+DL + + + HRIGRTGRAG GV+Y+L T
Sbjct: 308 ATDVAARGIDIADLTHVINFDLPKQAEDYVHRIGRTGRAGASGVSYSLFT 357
>gi|68474769|ref|XP_718592.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
gi|68474936|ref|XP_718509.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
gi|74627388|sp|Q5A9Z6.1|FAL1_CANAL RecName: Full=ATP-dependent RNA helicase FAL1
gi|46440277|gb|EAK99585.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
gi|46440366|gb|EAK99673.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
Length = 399
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 70/112 (62%)
Query: 31 NQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVA 90
N + A++ +L LA+ + + + V+ +HGDM Q ER+S++ F+R R+L++
Sbjct: 262 NLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLIS 321
Query: 91 TDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
TDV ARG+D+ + V+NYDL D + + HRIGR+GR G KG A L+T D
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDD 373
>gi|50557160|ref|XP_505988.1| YALI0F28391p [Yarrowia lipolytica]
gi|74659615|sp|Q6C024.1|PRP28_YARLI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
gi|49651858|emb|CAG78800.1| YALI0F28391p [Yarrowia lipolytica CLIB122]
Length = 575
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 70/110 (63%)
Query: 35 PPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVA 94
PP ++ L + + E ++++L + ++HG Q +R + KR +LVATDVA
Sbjct: 432 PPIVVFLNYKRDCEAVSDALVAAGWRTAIIHGGKQQEQREQAVQHLKRGAVDVLVATDVA 491
Query: 95 ARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
RGLDIP++ VVN+ +A +I+++THRIGRTGRAG +G A T + +D D
Sbjct: 492 GRGLDIPNVSLVVNFQMANNIESYTHRIGRTGRAGKRGTAVTFLGQEDDD 541
>gi|410633267|ref|ZP_11343914.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola arctica
BSs20135]
gi|410147436|dbj|GAC20781.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola arctica
BSs20135]
Length = 459
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 70/106 (66%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
A++ ++ +E+A+ LT VL LHGD++Q +R V+T+F + +LVATDVA+R
Sbjct: 244 AIVFCNTKIACQEVADELTKLGVSVLALHGDLEQRDRTEVLTRFSNRSVSVLVATDVASR 303
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
GLDI + V++Y + D + H HRIGRTGRA KG+A TL T K+
Sbjct: 304 GLDIKEVNAVISYQITPDPEVHIHRIGRTGRADAKGLALTLCTKKE 349
>gi|393908312|gb|EFO19476.2| hypothetical protein LOAG_09017 [Loa loa]
Length = 754
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/98 (48%), Positives = 66/98 (67%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A +LA L Y+V+ +HGD+ Q +R + F+ ILVAT VAARGLDIP+++ V
Sbjct: 563 ASDLAYYLQKDGYNVVAIHGDLKQFDREKHLETFRSGVAPILVATAVAARGLDIPNVKHV 622
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYDL DID + HRIGRTGR GN G+A + DK+++
Sbjct: 623 INYDLPSDIDEYVHRIGRTGRVGNVGLATSFFNDKNRN 660
>gi|299538292|ref|ZP_07051577.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
gi|298726494|gb|EFI67084.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
Length = 507
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 69/95 (72%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L+++ Y +HGD+ Q++R SV+ +FK + ILVATDVAARGLDI + V
Sbjct: 254 DELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D +++ HRIGRTGRAG G+A T VT ++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPRE 348
>gi|425433062|ref|ZP_18813601.1| putative DEAD-box ATP-dependent RNA helicase CshA [Helicobacter
pylori GAM100Ai]
gi|410714366|gb|EKQ71841.1| putative DEAD-box ATP-dependent RNA helicase CshA [Helicobacter
pylori GAM100Ai]
Length = 491
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 53/104 (50%), Positives = 67/104 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL L K Y LHGDMDQ +R + I FK+ + +LVATDVA+RGLDI + V
Sbjct: 270 ADELHQFLVSKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISGVSHV 329
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRSQ 150
NY L + +++ HRIGRTGRAG KG+A TLVT + LR Q
Sbjct: 330 FNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQ 373
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,153,007,980
Number of Sequences: 23463169
Number of extensions: 75276206
Number of successful extensions: 272860
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 41078
Number of HSP's successfully gapped in prelim test: 5335
Number of HSP's that attempted gapping in prelim test: 219409
Number of HSP's gapped (non-prelim): 56085
length of query: 150
length of database: 8,064,228,071
effective HSP length: 113
effective length of query: 37
effective length of database: 9,707,857,270
effective search space: 359190718990
effective search space used: 359190718990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 71 (32.0 bits)