BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17637
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus gallus GN=DDX42 PE=2
SV=1
Length = 944
Score = 152 bits (383), Expect = 1e-36, Method: Composition-based stats.
Identities = 74/107 (69%), Positives = 92/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L +++++ LLHGDMDQSERN VI++FK++ ILVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>sp|Q5R7D1|DDX42_PONAB ATP-dependent RNA helicase DDX42 OS=Pongo abelii GN=DDX42 PE=2 SV=1
Length = 942
Score = 150 bits (378), Expect = 3e-36, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42 PE=1 SV=1
Length = 938
Score = 150 bits (378), Expect = 3e-36, Method: Composition-based stats.
Identities = 73/107 (68%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELAN+L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus musculus GN=Ddx42 PE=1 SV=3
Length = 929
Score = 148 bits (373), Expect = 1e-35, Method: Composition-based stats.
Identities = 72/107 (67%), Positives = 91/107 (85%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELA++L + +++ LLHGDMDQSERN VI+ FK+++ +LVATDVAARG
Sbjct: 502 LLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARG 561
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TV+NYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T KD +
Sbjct: 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T KD FAG LVRNLEGANQ V L++LAMQ
Sbjct: 591 RAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQ 634
>sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus laevis GN=ddx42 PE=2
SV=1
Length = 947
Score = 144 bits (362), Expect = 2e-34, Method: Composition-based stats.
Identities = 72/107 (67%), Positives = 88/107 (82%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NAEELA +L ++ + LLHGDMDQSERN VI+ FK++ +LVATDVAARG
Sbjct: 499 LVFVTKKANAEELAANLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLVATDVAARG 558
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
LDIP I+TVVNYD+ARDIDTHTHRIGRTGRAG KGVAYTL+T K+ +
Sbjct: 559 LDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTSKESN 605
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/44 (70%), Positives = 35/44 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG KGVAYTL+T K+ FAG LVRNLEGANQ V L++LAMQ
Sbjct: 588 RAGEKGVAYTLLTSKESNFAGDLVRNLEGANQYVSKELLDLAMQ 631
>sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium
discoideum GN=ddx42 PE=3 SV=1
Length = 986
Score = 124 bits (310), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/105 (57%), Positives = 79/105 (75%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ ++ ++ E+L+++LT + LHGD +Q ER+ I FK + IL+ATDVAARG
Sbjct: 554 LIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDVAARG 613
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
LDIP I+ VVNYD +RDI++HTHRIGRTGRAGN GVAYTL+T KD
Sbjct: 614 LDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKD 658
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/43 (60%), Positives = 34/43 (79%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAM 43
RAGN GVAYTL+T KD F+ L++NLE A+Q VPP L+++AM
Sbjct: 643 RAGNTGVAYTLITPKDIHFSVDLIKNLESASQFVPPELIDVAM 685
>sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana
GN=RH24 PE=1 SV=2
Length = 760
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 83/132 (62%), Gaps = 2/132 (1%)
Query: 12 VTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQS 71
V D E L+ L G E L+ + + +E+ LT+ + V LHGD DQ+
Sbjct: 452 VIPSDAEKLPWLLEKLPGMIDEGD-VLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQA 510
Query: 72 ERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNK 131
R + KFK +L+ATDVAARGLDI ++TVVNYD+A+D+D H HRIGRTGRAG++
Sbjct: 511 SRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDR 570
Query: 132 -GVAYTLVTDKD 142
GVAYTLVT ++
Sbjct: 571 DGVAYTLVTQRE 582
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG++ GVAYTLVT ++ FAG LV +L A Q VPP L +LAM+
Sbjct: 566 RAGDRDGVAYTLVTQREARFAGELVNSLVAAGQNVPPELTDLAMK 610
>sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp.
japonica GN=Os03g0308500 PE=2 SV=1
Length = 770
Score = 107 bits (267), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/106 (50%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ A + +E+ + L + + + LHGD DQ+ R + KFK +LVATDVAARG
Sbjct: 468 LVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAARG 527
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNK-GVAYTLVTDKD 142
LDI I+TVVN+D+A+++D H HRIGRTGRAG+K G AYTL+T K+
Sbjct: 528 LDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKE 573
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 1 RAGNK-GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAG+K G AYTL+T K+ FAG LV L A Q+VP LM+LAM+
Sbjct: 557 RAGDKDGTAYTLITQKEVRFAGELVHCLIAAGQDVPNELMDLAMK 601
>sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp.
japonica GN=Os01g0172200 PE=2 SV=1
Length = 708
Score = 106 bits (264), Expect = 6e-23, Method: Composition-based stats.
Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 1/95 (1%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
++LA +L ++Y +HGD Q+ER+SV+++F+ C ILVATDVAARGLDI IR VV
Sbjct: 439 DQLARNLA-RQYGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKDIRVVV 497
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
NYD ++ + HRIGRTGRAG GVAYT D+D
Sbjct: 498 NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQD 532
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNL 41
RAG GVAYT D+D ++A LV+ LEGANQ V L ++
Sbjct: 517 RAGATGVAYTFFCDQDSKYASDLVKILEGANQSVSQQLRDM 557
>sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp.
japonica GN=Os01g0549400 PE=2 SV=2
Length = 792
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
++LA +LT +++ +HGD QSER V++ F+ ILVATDVAARGLDI IR V
Sbjct: 408 CDQLARTLT-RQFGASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVV 466
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
+NYD I+ + HRIGRTGRAG GVAYT D+D
Sbjct: 467 INYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQD 502
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG GVAYT D+D ++A L++ LEGANQ VP L ++A
Sbjct: 487 RAGATGVAYTFFCDQDSKYAADLIKILEGANQRVPRDLADMA 528
>sp|A4RHF1|DED1_MAGO7 ATP-dependent RNA helicase DED1 OS=Magnaporthe oryzae (strain 70-15
/ ATCC MYA-4617 / FGSC 8958) GN=DED1 PE=3 SV=2
Length = 671
Score = 103 bits (256), Expect = 4e-22, Method: Composition-based stats.
Identities = 52/108 (48%), Positives = 67/108 (62%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
L+ + + NA+EL++ L + +HGD Q ER + F+ C ILVAT VAARG
Sbjct: 453 LIFVETKRNADELSDFLQNQNLPATSIHGDRTQRERERALEMFRTGRCPILVATAVAARG 512
Query: 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145
LDIP++ V+NYDL DID + HRIGRTGRAGN G+A KD G
Sbjct: 513 LDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFDMKDNSG 560
>sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis thaliana
GN=RH52 PE=2 SV=1
Length = 646
Score = 102 bits (255), Expect = 6e-22, Method: Composition-based stats.
Identities = 61/137 (44%), Positives = 76/137 (55%), Gaps = 7/137 (5%)
Query: 11 LVTDKDKEFAGHLVRNL----EGANQ-EVPPALMNLAMQLNAEELANSLTVKEYDVLLLH 65
V D DK HL+ L E NQ + L+ + + A+ L N L + + +H
Sbjct: 379 FVHDSDKR--SHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIH 436
Query: 66 GDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRT 125
GD Q ER + FK ILVATDVAARGLDIPH+ VVN+DL DID + HRIGRT
Sbjct: 437 GDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRT 496
Query: 126 GRAGNKGVAYTLVTDKD 142
GRAGN G+A D +
Sbjct: 497 GRAGNSGLATAFFNDNN 513
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAGN G+A D + A L ++ ANQEVP L A
Sbjct: 498 RAGNSGLATAFFNDNNTTMAKPLAELMQEANQEVPDWLTRYA 539
>sp|Q9Y7T7|PRP28_SCHPO Pre-mRNA-splicing ATP-dependent RNA helicase prp28
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp28 PE=3 SV=1
Length = 662
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 81/134 (60%), Gaps = 2/134 (1%)
Query: 11 LVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQ 70
+++D K++ V + +N+ PP ++ + ++ N E +A L + + LHG Q
Sbjct: 495 MISDDSKKW--RRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQ 552
Query: 71 SERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130
+R I + + + ILVATD+A RG+DIP++ V+NY++A+ I+ +THRIGRTGRAG
Sbjct: 553 EQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGK 612
Query: 131 KGVAYTLVTDKDKD 144
G A T + +D D
Sbjct: 613 SGTAITFLGPEDTD 626
>sp|Q49Z29|Y802_STAS1 Probable DEAD-box ATP-dependent RNA helicase SSP0802
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=SSP0802 PE=3 SV=1
Length = 506
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG KGVA T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMD 350
>sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DBP3 PE=3 SV=1
Length = 504
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 66/97 (68%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A + +L YDV +HGD+ Q +R + +FK +C +L+ATDVAARGLDIP+++TV
Sbjct: 353 ASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTV 412
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
+N ++ + HRIGRTGRAG G A+TL T+++K
Sbjct: 413 INLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEK 449
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEE 49
RAG G A+TL T+++K AG LV L GA Q VP L +E
Sbjct: 433 RAGQYGTAHTLFTEQEKHLAGALVNVLNGAGQPVPEELKKFGTHTKKKE 481
>sp|Q54KG1|DDX41_DICDI Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium
discoideum GN=ddx41 PE=1 SV=1
Length = 671
Score = 101 bits (252), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/145 (38%), Positives = 86/145 (59%), Gaps = 4/145 (2%)
Query: 3 GNKGVAYTLVTDKDKEFA---GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEY 59
G G A VT ++ EF +V LE + PP L+ + + +++ L +K+
Sbjct: 441 GRAGAANLNVT-QEVEFVKPEAKIVYLLECLQKTPPPVLIFCENKKDVDDIYEYLLLKQV 499
Query: 60 DVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHT 119
+ + +HGD Q ER S I F+ + +LVATDVA++GLD P I+ V+N+D+ R+I+ +
Sbjct: 500 EAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYI 559
Query: 120 HRIGRTGRAGNKGVAYTLVTDKDKD 144
HRIGRTGR GNKGVA T + + +
Sbjct: 560 HRIGRTGRRGNKGVATTFINKNNTE 584
>sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DBP8 PE=3 SV=2
Length = 441
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 6 GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLH 65
V Y V KE H + NL + + N AE L +L E+ V LH
Sbjct: 227 SVKYVFVPSYVKEAYLHSILNLPQYSDSLSIIFTNRTA--TAELLRRTLRKLEFRVASLH 284
Query: 66 GDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRT 125
+M Q+ER + + +FK +IL+ATDVA+RGLDIP + VVNYD+ D D HR+GRT
Sbjct: 285 SEMPQTERTNSLHRFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRT 344
Query: 126 GRAGNKGVAYTLVTDKDKD 144
RAG KG A ++V +KD D
Sbjct: 345 ARAGRKGDAISIVAEKDVD 363
>sp|A3LP87|DBP8_PICST ATP-dependent RNA helicase DBP8 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=DBP8 PE=3 SV=2
Length = 445
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 6 GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLH 65
+ Y V KE +L L E A++ + AE L +L E+ V LH
Sbjct: 227 SIKYVFVPSYVKE--AYLNSILRLPQYEKSTAVIFVNRTTTAEVLRRTLRKLEFRVASLH 284
Query: 66 GDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRT 125
+M QSER + + +FK RIL+ATDVA+RGLDIP + VVN+D+ D D HR+GRT
Sbjct: 285 SEMPQSERTNSVQRFKAGAARILIATDVASRGLDIPSVELVVNFDIPADPDDFIHRVGRT 344
Query: 126 GRAGNKGVAYTLVTDKDKD 144
RAG G A T++ +KD D
Sbjct: 345 ARAGRSGDAVTIIAEKDID 363
>sp|Q6GEZ3|Y2168_STAAR Probable DEAD-box ATP-dependent RNA helicase SAR2168
OS=Staphylococcus aureus (strain MRSA252) GN=SAR2168
PE=3 SV=1
Length = 506
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>sp|Q2YUH3|Y1965_STAAB Probable DEAD-box ATP-dependent RNA helicase SAB1965c
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=SAB1965c PE=3 SV=1
Length = 506
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>sp|Q2FWH5|Y2316_STAA8 Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316
OS=Staphylococcus aureus (strain NCTC 8325)
GN=SAOUHSC_02316 PE=3 SV=1
Length = 506
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>sp|Q99SH6|Y2081_STAAM Probable DEAD-box ATP-dependent RNA helicase SAV2081
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=SAV2081 PE=3 SV=1
Length = 506
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>sp|Q5HEB9|Y2072_STAAC Probable DEAD-box ATP-dependent RNA helicase SACOL2072
OS=Staphylococcus aureus (strain COL) GN=SACOL2072 PE=3
SV=1
Length = 506
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>sp|Q2FF45|Y2037_STAA3 Probable DEAD-box ATP-dependent RNA helicase SAUSA300_2037
OS=Staphylococcus aureus (strain USA300)
GN=SAUSA300_2037 PE=3 SV=1
Length = 506
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>sp|Q7A0D2|Y2004_STAAW Probable DEAD-box ATP-dependent RNA helicase MW2004
OS=Staphylococcus aureus (strain MW2) GN=MW2004 PE=3
SV=1
Length = 506
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>sp|Q6G7M9|Y1985_STAAS Probable DEAD-box ATP-dependent RNA helicase SAS1985
OS=Staphylococcus aureus (strain MSSA476) GN=SAS1985
PE=3 SV=1
Length = 506
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>sp|Q7A4G0|Y1885_STAAN Probable DEAD-box ATP-dependent RNA helicase SA1885
OS=Staphylococcus aureus (strain N315) GN=SA1885 PE=1
SV=1
Length = 506
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=DBP2 PE=3 SV=1
Length = 540
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 11 LVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQ 70
+ TD DK L+ +LE +QE L+ +A + A++L L + + L +HGD Q
Sbjct: 335 VCTDFDKR--SKLLSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQ 392
Query: 71 SERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130
+ER+ V+ +FK I++ATDVA+RGLD+ I V+NYD + + + HRIGRTGRAG
Sbjct: 393 AERDWVLAEFKSGRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGR 452
Query: 131 KGVAYTLVT 139
KG +YT T
Sbjct: 453 KGTSYTYFT 461
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAM 43
RAG KG +YT T + + A LV+ L + ++PP L +AM
Sbjct: 449 RAGRKGTSYTYFTMDNSKAARELVQILRESKADIPPELEEMAM 491
>sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=DBP2 PE=3 SV=1
Length = 540
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 11 LVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQ 70
+ TD DK L+ +LE +QE L+ +A + A++L L + + L +HGD Q
Sbjct: 335 VCTDFDKR--SKLLSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQ 392
Query: 71 SERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130
+ER+ V+ +FK I++ATDVA+RGLD+ I V+NYD + + + HRIGRTGRAG
Sbjct: 393 AERDWVLAEFKSGRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGR 452
Query: 131 KGVAYTLVT 139
KG +YT T
Sbjct: 453 KGTSYTYFT 461
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAM 43
RAG KG +YT T + + A LV+ L + ++PP L +AM
Sbjct: 449 RAGRKGTSYTYFTMDNSKAARELVQILRESKADIPPELEEMAM 491
>sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=Geobacillus
kaustophilus (strain HTA426) GN=cshA PE=3 SV=1
Length = 467
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 67/95 (70%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ELA +L ++ Y +HGD+ Q++R SV+ KFK ILVATDVAARGLDI + V
Sbjct: 254 DELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
N+D+ +D +++ HRIGRTGRAG GVA T VT ++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPRE 348
>sp|A3LNL1|PRP28_PICST Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PRP28 PE=3 SV=2
Length = 482
Score = 100 bits (249), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/85 (50%), Positives = 60/85 (70%)
Query: 60 DVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHT 119
D +++HG Q R I+ F+ E RIL+ATDVAARG+D+P++ VVN+ ++R D +
Sbjct: 365 DNVVIHGSKTQELREKAISSFRSHESRILIATDVAARGIDVPNVSLVVNFQMSRKFDEYV 424
Query: 120 HRIGRTGRAGNKGVAYTLVTDKDKD 144
HRIGRTGRAGN+G +YT + D D D
Sbjct: 425 HRIGRTGRAGNRGESYTFIDDSDSD 449
>sp|A3LRW2|DBP3_PICST ATP-dependent RNA helicase DBP3 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=DBP3 PE=3 SV=1
Length = 526
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 79/130 (60%), Gaps = 1/130 (0%)
Query: 14 DKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSER 73
DK+K+ G L+R + +++ L+ + A + L Y+V +HGD+ Q +R
Sbjct: 343 DKEKKLLG-LLRQYQSGSKKNDKVLIFALYKKEATRIEGLLRRNSYNVAAIHGDLSQQQR 401
Query: 74 NSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGV 133
+ + FK+ E +L+ATDVAARGLDIP+++ V+N ++ + HRIGRTGRAG G
Sbjct: 402 TNALNSFKKGESSLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTGT 461
Query: 134 AYTLVTDKDK 143
A+TL T+ +K
Sbjct: 462 AHTLFTEHEK 471
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG G A+TL T+ +K +G L+ L GANQ VP L+
Sbjct: 455 RAGQTGTAHTLFTEHEKHLSGALMNILRGANQPVPDELLKFG 496
>sp|Q8LA13|RH11_ARATH DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis thaliana
GN=RH11 PE=2 SV=1
Length = 612
Score = 100 bits (248), Expect = 4e-21, Method: Composition-based stats.
Identities = 49/96 (51%), Positives = 60/96 (62%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+ L N L + E+ +HGD Q ER + FK ILVATDVAARGLDIPH+ V
Sbjct: 421 ADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHV 480
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
VN+DL DID + HRIGRTGRAG G+A + +
Sbjct: 481 VNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENN 516
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLA 42
RAG G+A + + + A L ++ ANQEVP L A
Sbjct: 501 RAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLTRYA 542
>sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=FAL1 PE=3 SV=1
Length = 399
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 70/112 (62%)
Query: 31 NQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVA 90
N + A++ +L LA+ + + + V+ +HGDM Q ER+S++ F+R R+L++
Sbjct: 262 NLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLIS 321
Query: 91 TDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
TDV ARG+D+ + V+NYDL D + + HRIGR+GR G KG A L+T D
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDD 373
>sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PRP28 PE=3 SV=1
Length = 575
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 70/110 (63%)
Query: 35 PPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVA 94
PP ++ L + + E ++++L + ++HG Q +R + KR +LVATDVA
Sbjct: 432 PPIVVFLNYKRDCEAVSDALVAAGWRTAIIHGGKQQEQREQAVQHLKRGAVDVLVATDVA 491
Query: 95 ARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
RGLDIP++ VVN+ +A +I+++THRIGRTGRAG +G A T + +D D
Sbjct: 492 GRGLDIPNVSLVVNFQMANNIESYTHRIGRTGRAGKRGTAVTFLGQEDDD 541
>sp|A4RN46|PRP5_MAGO7 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=PRP5 PE=3 SV=1
Length = 1012
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 69/108 (63%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
+L+ + Q A+EL L K Y + LHG DQ +R+S I+ FK C +++AT VAAR
Sbjct: 631 SLIFVERQEKADELLRELLRKGYGCMSLHGGKDQVDRDSTISDFKSGVCPVMIATSVAAR 690
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
GLD+ ++ VVNYD ++ + HR GRTGRAGN G A T VT++ ++
Sbjct: 691 GLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQEN 738
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNL 41
RAGN G A T VT++ + A + + LE + Q VP L+ +
Sbjct: 721 RAGNTGTAVTFVTEEQENCAIGIAKALEQSGQPVPEKLIEM 761
>sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 10987) GN=cshA PE=3 SV=1
Length = 525
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +L ++ Y +HGD+ Q++R SV+ KFK +LVATDVAARGLDI + V
Sbjct: 254 DELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRS 149
N+D+ +D +++ HRIGRTGRAG KG+A VT ++ G+L++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE-SGQLKN 354
>sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=PRP5 PE=3 SV=1
Length = 1064
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 70/108 (64%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
AL+ + Q A++L + + Y + +HG DQ +RNS I+ FK+ C I++AT VAAR
Sbjct: 682 ALIFVERQEKADDLLREVLRRGYGCMSIHGGKDQEDRNSTISDFKKGVCPIMIATSVAAR 741
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
GLD+ ++ VVNYD ++ + HR GRTGRAGN G A T +T++ ++
Sbjct: 742 GLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEN 789
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPAL 38
RAGN G A T +T++ + A + + LE + Q VP L
Sbjct: 772 RAGNTGTAVTFITEEQENCAPGIAKALEQSGQPVPEQL 809
>sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DED1 PE=3 SV=1
Length = 650
Score = 99.8 bits (247), Expect = 5e-21, Method: Composition-based stats.
Identities = 49/88 (55%), Positives = 61/88 (69%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+EL + L ++++ +HGD QSER + FK +LVAT VAARGLDIP++ V
Sbjct: 430 ADELTDFLIMQDFRATAIHGDRTQSERERALAAFKNGNANLLVATAVAARGLDIPNVTHV 489
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVA 134
VNYDL DID + HRIGRTGRAGN GVA
Sbjct: 490 VNYDLPSDIDDYVHRIGRTGRAGNTGVA 517
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPAL 38
RAGN GVA ++ + L ANQE+PP L
Sbjct: 510 RAGNTGVATAFFNRGNRNIVKGMYELLAEANQEIPPFL 547
>sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ZK / E33L) GN=cshA PE=3 SV=1
Length = 528
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +L ++ Y +HGD+ Q++R SV+ KFK +LVATDVAARGLDI + V
Sbjct: 254 DELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRS 149
N+D+ +D +++ HRIGRTGRAG KG+A VT ++ G+L++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE-SGQLKN 354
>sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helicase prp-5 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=prp-5 PE=3 SV=1
Length = 1194
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 68/105 (64%)
Query: 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96
+L+ + Q A++L L + Y + +HG DQ +RNS I+ FK+ C IL+AT +AAR
Sbjct: 814 SLIFVERQEKADDLLRELLRRGYGCMSIHGGKDQEDRNSTISDFKKGVCPILIATSIAAR 873
Query: 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141
GLD+ ++ V+NYD ++ + HR GRTGRAGN G A T +T++
Sbjct: 874 GLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEE 918
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVP 35
RAGN G A T +T++ + A + + LE + Q VP
Sbjct: 904 RAGNTGTAVTFITEEQENCASGIAKALEQSGQPVP 938
>sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=cshA PE=3 SV=1
Length = 528
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +L ++ Y +HGD+ Q++R SV+ KFK +LVATDVAARGLDI + V
Sbjct: 254 DELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRS 149
N+D+ +D +++ HRIGRTGRAG KG+A VT ++ G+L++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE-SGQLKN 354
>sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus anthracis
GN=cshA PE=3 SV=1
Length = 528
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +L ++ Y +HGD+ Q++R SV+ KFK +LVATDVAARGLDI + V
Sbjct: 254 DELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRS 149
N+D+ +D +++ HRIGRTGRAG KG+A VT ++ G+L++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE-SGQLKN 354
>sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis
(strain Al Hakam) GN=cshA PE=3 SV=1
Length = 528
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +L ++ Y +HGD+ Q++R SV+ KFK +LVATDVAARGLDI + V
Sbjct: 254 DELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRS 149
N+D+ +D +++ HRIGRTGRAG KG+A VT ++ G+L++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE-SGQLKN 354
>sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46
PE=2 SV=1
Length = 1018
Score = 99.8 bits (247), Expect = 6e-21, Method: Composition-based stats.
Identities = 55/132 (41%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68
+ +V +++K+F L + G QE ++ + Q +A+ L L Y + LHG +
Sbjct: 564 HVIVIEEEKKFLKLL--EILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGI 621
Query: 69 DQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128
DQ +R+S+I FK CR+LVAT VAARGLD+ + VVNY + + HR GRTGRA
Sbjct: 622 DQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRA 681
Query: 129 GNKGVAYTLVTD 140
GNKG AYT +T+
Sbjct: 682 GNKGYAYTFITE 693
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK 57
RAGNKG AYT +T+ ++G +++ LE + VP L L ++ A +K
Sbjct: 680 RAGNKGYAYTFITEGQARYSGDILKALELSGSSVPAELEQLWTNFKEQQKAEGKIIK 736
>sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP1 PE=1 SV=2
Length = 617
Score = 99.8 bits (247), Expect = 6e-21, Method: Composition-based stats.
Identities = 47/98 (47%), Positives = 65/98 (66%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A++L + L ++ + +HGD Q+ER ++ FK ILVAT VAARGLDIP++ V
Sbjct: 424 ADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHV 483
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYDL DID + HRIGRTGRAGN GVA + +++
Sbjct: 484 INYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQN 521
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAGN GVA + ++ L+ L ANQEVP L +L+ Q
Sbjct: 504 RAGNTGVATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLSRQ 547
>sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain
ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2
Length = 533
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL+ +L ++ Y +HGD+ Q++R SV+ KFK +LVATDVAARGLDI + V
Sbjct: 254 DELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRS 149
N+D+ +D +++ HRIGRTGRAG KG+A VT ++ G+L++
Sbjct: 314 NFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE-SGQLKN 354
>sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP1 PE=3 SV=1
Length = 617
Score = 99.8 bits (247), Expect = 6e-21, Method: Composition-based stats.
Identities = 47/98 (47%), Positives = 65/98 (66%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A++L + L ++ + +HGD Q+ER ++ FK ILVAT VAARGLDIP++ V
Sbjct: 424 ADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHV 483
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYDL DID + HRIGRTGRAGN GVA + +++
Sbjct: 484 INYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQN 521
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
RAGN GVA + ++ L+ L ANQEVP L +L+ Q
Sbjct: 504 RAGNTGVATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLSRQ 547
>sp|Q5HME0|Y1688_STAEQ Probable DEAD-box ATP-dependent RNA helicase SERP1688
OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=SERP1688 PE=3 SV=1
Length = 509
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
>sp|Q8CRP6|Y1679_STAES Probable DEAD-box ATP-dependent RNA helicase SE_1679
OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=SE_1679 PE=3 SV=1
Length = 509
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 67/97 (69%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+EL ++L K Y LHGD+ Q++R V+ KFK + ILVATDVAARGLDI + V
Sbjct: 254 DELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVY 313
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ +D +++THRIGRTGRAG +G+A T V + D
Sbjct: 314 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMD 350
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,420,870
Number of Sequences: 539616
Number of extensions: 1864723
Number of successful extensions: 8158
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1742
Number of HSP's successfully gapped in prelim test: 197
Number of HSP's that attempted gapping in prelim test: 5685
Number of HSP's gapped (non-prelim): 2581
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)