Query psy17637
Match_columns 150
No_of_seqs 124 out of 1208
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 19:07:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331|consensus 100.0 1.1E-30 2.3E-35 197.5 11.9 138 6-143 312-450 (519)
2 KOG0328|consensus 100.0 9.2E-31 2E-35 183.2 10.0 139 5-144 238-376 (400)
3 KOG0333|consensus 100.0 2.7E-29 5.8E-34 187.6 13.3 134 9-144 494-627 (673)
4 COG0513 SrmB Superfamily II DN 100.0 4.7E-29 1E-33 192.5 13.0 135 5-141 245-380 (513)
5 PTZ00110 helicase; Provisional 100.0 1.4E-28 2.9E-33 191.3 15.5 126 18-143 361-486 (545)
6 PRK04837 ATP-dependent RNA hel 100.0 6.1E-29 1.3E-33 188.6 12.6 125 17-143 240-364 (423)
7 TIGR00614 recQ_fam ATP-depende 100.0 2.8E-28 6.1E-33 187.0 14.2 124 19-143 212-335 (470)
8 PRK11776 ATP-dependent RNA hel 100.0 4.6E-28 1E-32 185.5 14.8 131 10-142 220-350 (460)
9 PRK11192 ATP-dependent RNA hel 100.0 7.4E-28 1.6E-32 183.2 15.1 121 21-142 233-353 (434)
10 PLN03137 ATP-dependent DNA hel 100.0 4.7E-28 1E-32 195.8 13.7 137 4-142 652-788 (1195)
11 PLN00206 DEAD-box ATP-dependen 100.0 1.1E-27 2.4E-32 185.5 14.8 125 19-143 352-477 (518)
12 PRK04537 ATP-dependent RNA hel 100.0 1.2E-27 2.6E-32 186.7 14.5 128 13-142 238-365 (572)
13 PRK11057 ATP-dependent DNA hel 100.0 1.5E-27 3.2E-32 187.6 14.6 120 21-142 225-344 (607)
14 PRK10590 ATP-dependent RNA hel 100.0 1.8E-27 3.9E-32 182.0 14.4 121 22-143 234-354 (456)
15 KOG0330|consensus 100.0 4.8E-28 1E-32 175.5 10.4 125 22-148 290-414 (476)
16 PRK01297 ATP-dependent RNA hel 100.0 3.5E-27 7.5E-32 181.3 15.1 111 32-142 333-443 (475)
17 PRK11634 ATP-dependent RNA hel 99.9 7.7E-27 1.7E-31 183.5 14.9 123 18-142 231-353 (629)
18 PTZ00424 helicase 45; Provisio 99.9 3.6E-27 7.8E-32 177.7 12.1 112 33-144 266-377 (401)
19 COG0514 RecQ Superfamily II DN 99.9 6.3E-27 1.4E-31 179.8 12.4 112 32-143 228-339 (590)
20 TIGR01389 recQ ATP-dependent D 99.9 1.3E-26 2.8E-31 182.2 14.5 134 5-142 199-332 (591)
21 KOG0332|consensus 99.9 3.5E-26 7.6E-31 165.2 12.2 129 15-145 313-447 (477)
22 KOG0341|consensus 99.9 1.9E-26 4.1E-31 167.8 7.9 125 22-146 409-533 (610)
23 KOG0326|consensus 99.9 2.2E-26 4.7E-31 163.7 7.6 113 33-145 321-433 (459)
24 TIGR03817 DECH_helic helicase/ 99.9 9.9E-26 2.1E-30 180.2 10.7 111 34-144 271-389 (742)
25 KOG0340|consensus 99.9 3.2E-25 6.9E-30 159.3 11.5 122 22-143 241-363 (442)
26 KOG0335|consensus 99.9 4.5E-25 9.7E-30 165.0 12.7 138 4-141 300-444 (482)
27 KOG0336|consensus 99.9 6.6E-25 1.4E-29 160.6 11.0 136 7-143 439-574 (629)
28 cd00079 HELICc Helicase superf 99.9 9.9E-24 2.2E-28 135.7 13.8 119 18-136 12-130 (131)
29 KOG0342|consensus 99.9 2.1E-24 4.5E-29 160.3 10.1 131 11-143 309-439 (543)
30 KOG0344|consensus 99.9 8E-24 1.7E-28 160.0 13.1 122 19-142 374-496 (593)
31 KOG0345|consensus 99.9 1.3E-23 2.9E-28 155.5 11.0 134 7-142 230-365 (567)
32 KOG0351|consensus 99.9 1.1E-23 2.5E-28 169.5 10.5 141 3-144 455-595 (941)
33 PRK04914 ATP-dependent helicas 99.9 5.2E-23 1.1E-27 166.7 13.9 118 19-138 480-600 (956)
34 PRK13767 ATP-dependent helicas 99.9 4.4E-23 9.6E-28 167.7 13.0 119 22-140 272-397 (876)
35 COG1111 MPH1 ERCC4-like helica 99.9 7.3E-23 1.6E-27 152.9 12.7 125 20-146 353-486 (542)
36 KOG0347|consensus 99.9 4.7E-24 1E-28 160.6 6.0 128 18-145 434-574 (731)
37 KOG0327|consensus 99.9 4.2E-23 9.1E-28 149.5 9.9 137 5-145 238-374 (397)
38 TIGR00580 mfd transcription-re 99.9 3.9E-22 8.5E-27 161.8 15.6 110 32-141 658-770 (926)
39 KOG0338|consensus 99.9 4.6E-23 1E-27 154.2 9.1 110 34-143 426-535 (691)
40 PRK09200 preprotein translocas 99.9 3.4E-22 7.4E-27 158.9 13.1 125 17-143 411-543 (790)
41 PRK10917 ATP-dependent DNA hel 99.9 8.2E-22 1.8E-26 156.9 14.9 120 22-141 459-589 (681)
42 PRK12898 secA preprotein trans 99.9 4.9E-22 1.1E-26 155.3 13.2 125 17-143 456-588 (656)
43 PF00271 Helicase_C: Helicase 99.9 1.2E-22 2.7E-27 120.0 7.2 77 53-129 2-78 (78)
44 TIGR00631 uvrb excinuclease AB 99.9 9.5E-22 2.1E-26 155.1 13.3 123 19-142 427-554 (655)
45 KOG0348|consensus 99.9 7E-22 1.5E-26 148.5 11.6 113 32-144 423-557 (708)
46 TIGR00643 recG ATP-dependent D 99.9 2.3E-21 5.1E-26 153.3 14.7 118 22-139 436-564 (630)
47 KOG0343|consensus 99.9 7.3E-22 1.6E-26 149.0 10.6 132 10-143 291-424 (758)
48 KOG0339|consensus 99.9 9.8E-22 2.1E-26 147.2 11.1 132 12-144 447-578 (731)
49 KOG0350|consensus 99.9 5.3E-22 1.1E-26 148.1 9.3 130 14-145 411-544 (620)
50 PRK10689 transcription-repair 99.9 3.6E-21 7.9E-26 159.0 15.1 109 33-141 808-919 (1147)
51 PRK09751 putative ATP-dependen 99.9 1.8E-21 3.9E-26 162.5 11.4 107 33-139 243-383 (1490)
52 PRK05298 excinuclease ABC subu 99.9 6.6E-21 1.4E-25 150.9 13.6 121 20-141 432-557 (652)
53 TIGR03714 secA2 accessory Sec 99.9 6.1E-21 1.3E-25 150.9 13.1 123 18-143 408-539 (762)
54 PRK02362 ski2-like helicase; P 99.9 2.7E-21 5.8E-26 155.4 11.1 110 32-141 241-397 (737)
55 PRK13766 Hef nuclease; Provisi 99.9 1.3E-20 2.8E-25 152.4 14.0 123 21-145 353-483 (773)
56 TIGR01587 cas3_core CRISPR-ass 99.9 1.5E-20 3.2E-25 140.0 13.2 108 32-142 220-337 (358)
57 TIGR00963 secA preprotein tran 99.9 1.4E-20 3E-25 148.3 13.5 123 19-143 390-519 (745)
58 PHA02558 uvsW UvsW helicase; P 99.9 1.5E-20 3.2E-25 145.4 13.2 102 32-133 342-444 (501)
59 KOG0334|consensus 99.8 6.7E-21 1.5E-25 151.8 11.0 134 7-141 586-720 (997)
60 TIGR01970 DEAH_box_HrpB ATP-de 99.8 9.8E-21 2.1E-25 152.3 11.6 110 33-143 208-338 (819)
61 PHA02653 RNA helicase NPH-II; 99.8 1E-20 2.2E-25 149.3 11.2 118 23-143 383-516 (675)
62 KOG4284|consensus 99.8 5.8E-21 1.3E-25 146.5 9.3 112 32-143 270-381 (980)
63 PRK12906 secA preprotein trans 99.8 3.5E-20 7.5E-25 147.1 12.6 125 17-143 423-555 (796)
64 KOG0352|consensus 99.8 8.2E-21 1.8E-25 139.9 7.4 112 34-145 255-366 (641)
65 KOG0346|consensus 99.8 2.4E-20 5.2E-25 137.6 9.2 139 5-144 240-413 (569)
66 PRK11664 ATP-dependent RNA hel 99.8 3.3E-20 7.1E-25 149.4 10.8 110 33-143 211-341 (812)
67 KOG0354|consensus 99.8 2.1E-19 4.6E-24 140.6 12.4 107 32-140 411-528 (746)
68 smart00490 HELICc helicase sup 99.8 1.1E-19 2.4E-24 107.7 8.3 81 49-129 2-82 (82)
69 PRK00254 ski2-like helicase; P 99.8 8.6E-20 1.9E-24 146.4 10.0 110 33-142 237-389 (720)
70 COG1201 Lhr Lhr-like helicases 99.8 3E-19 6.6E-24 142.0 12.8 119 22-140 241-361 (814)
71 TIGR00603 rad25 DNA repair hel 99.8 3.3E-19 7.2E-24 141.0 12.7 110 33-147 495-613 (732)
72 TIGR02621 cas3_GSU0051 CRISPR- 99.8 5.7E-19 1.2E-23 141.1 13.9 102 33-139 271-389 (844)
73 PRK01172 ski2-like helicase; P 99.8 1.9E-19 4.1E-24 143.7 10.7 110 32-142 234-379 (674)
74 PRK12900 secA preprotein trans 99.8 3.5E-19 7.7E-24 142.9 11.3 125 18-144 582-714 (1025)
75 COG1202 Superfamily II helicas 99.8 2.9E-19 6.3E-24 135.8 9.2 109 34-142 440-554 (830)
76 KOG0353|consensus 99.8 6.3E-19 1.4E-23 128.8 8.9 137 4-141 286-467 (695)
77 PRK11131 ATP-dependent RNA hel 99.8 2.4E-18 5.1E-23 142.3 9.6 109 32-143 284-413 (1294)
78 KOG0337|consensus 99.7 2.3E-18 5E-23 126.6 6.1 131 13-144 241-371 (529)
79 COG1200 RecG RecG-like helicas 99.7 2.5E-17 5.4E-22 127.6 11.7 137 3-142 445-592 (677)
80 KOG0349|consensus 99.7 1.9E-17 4.1E-22 122.7 9.3 109 33-141 504-615 (725)
81 TIGR01967 DEAH_box_HrpA ATP-de 99.7 1.6E-17 3.5E-22 137.7 9.7 108 33-143 278-406 (1283)
82 PLN03142 Probable chromatin-re 99.7 6.9E-17 1.5E-21 132.0 12.8 114 32-145 485-603 (1033)
83 TIGR03158 cas3_cyano CRISPR-as 99.7 2E-16 4.2E-21 117.9 10.9 85 33-126 271-357 (357)
84 PRK13104 secA preprotein trans 99.7 4E-16 8.7E-21 125.1 13.1 125 18-144 428-590 (896)
85 PRK12904 preprotein translocas 99.7 4.8E-16 1E-20 124.2 13.2 124 19-144 415-576 (830)
86 COG1197 Mfd Transcription-repa 99.7 8.6E-16 1.9E-20 124.9 14.4 133 6-142 779-914 (1139)
87 COG1061 SSL2 DNA or RNA helica 99.7 2.1E-15 4.5E-20 115.2 14.2 95 33-128 282-376 (442)
88 PRK13107 preprotein translocas 99.7 6.9E-16 1.5E-20 123.6 11.5 125 18-144 433-594 (908)
89 COG0556 UvrB Helicase subunit 99.7 7.7E-16 1.7E-20 116.4 10.6 122 19-141 431-557 (663)
90 PRK09694 helicase Cas3; Provis 99.6 1.6E-15 3.4E-20 122.9 11.0 106 22-130 548-664 (878)
91 PRK14701 reverse gyrase; Provi 99.6 1.8E-15 3.9E-20 128.6 11.5 120 6-134 306-449 (1638)
92 COG1204 Superfamily II helicas 99.6 3E-15 6.6E-20 120.0 11.0 122 22-143 241-410 (766)
93 COG4098 comFA Superfamily II D 99.6 2.4E-14 5.2E-19 103.5 11.6 115 22-138 293-413 (441)
94 TIGR00595 priA primosomal prot 99.6 9E-15 2E-19 113.2 10.0 95 47-141 271-381 (505)
95 PRK09401 reverse gyrase; Revie 99.6 8E-15 1.7E-19 122.1 9.9 98 22-127 319-430 (1176)
96 PRK11448 hsdR type I restricti 99.6 3.5E-14 7.6E-19 117.9 12.2 95 34-130 698-802 (1123)
97 KOG0947|consensus 99.6 2.9E-14 6.4E-19 113.7 10.3 119 20-141 555-723 (1248)
98 KOG0948|consensus 99.5 1.1E-14 2.4E-19 113.8 6.1 121 22-145 373-543 (1041)
99 KOG0384|consensus 99.5 1.5E-13 3.3E-18 111.8 10.3 113 32-144 697-814 (1373)
100 COG1205 Distinct helicase fami 99.5 2.3E-13 4.9E-18 110.6 11.3 115 33-147 305-428 (851)
101 TIGR01054 rgy reverse gyrase. 99.5 2.4E-13 5.2E-18 113.5 11.7 85 22-113 317-409 (1171)
102 KOG4150|consensus 99.5 1.1E-13 2.5E-18 105.9 8.5 115 33-147 524-646 (1034)
103 PRK05580 primosome assembly pr 99.5 3.5E-13 7.7E-18 107.7 11.3 96 47-142 439-550 (679)
104 COG1643 HrpA HrpA-like helicas 99.4 1E-12 2.2E-17 105.9 8.9 112 32-144 257-390 (845)
105 KOG0387|consensus 99.4 2.1E-12 4.6E-17 101.6 10.0 131 16-146 528-663 (923)
106 KOG0390|consensus 99.4 5.7E-12 1.2E-16 100.2 12.4 110 36-145 597-711 (776)
107 KOG0329|consensus 99.4 8.8E-14 1.9E-18 97.2 1.6 103 6-145 257-359 (387)
108 KOG0385|consensus 99.4 4.5E-12 9.7E-17 99.7 11.1 125 19-146 475-604 (971)
109 PRK12903 secA preprotein trans 99.4 5.3E-12 1.2E-16 101.1 11.0 124 18-144 410-542 (925)
110 KOG0950|consensus 99.4 1.1E-12 2.5E-17 104.8 6.7 111 33-143 459-613 (1008)
111 KOG0951|consensus 99.4 2.8E-12 6E-17 105.0 8.8 110 21-131 534-690 (1674)
112 COG1203 CRISPR-associated heli 99.4 4.8E-12 1E-16 102.1 10.2 115 23-140 429-549 (733)
113 KOG0922|consensus 99.4 4.5E-12 9.8E-17 98.3 9.2 112 32-144 256-393 (674)
114 PRK12326 preprotein translocas 99.3 2E-11 4.3E-16 96.6 11.9 125 17-143 410-549 (764)
115 KOG0953|consensus 99.3 1.4E-11 3E-16 94.1 10.1 114 22-139 347-475 (700)
116 KOG0391|consensus 99.3 2.6E-11 5.7E-16 99.0 12.2 134 11-147 1256-1393(1958)
117 KOG0952|consensus 99.3 1.7E-11 3.6E-16 99.1 8.1 117 25-141 340-491 (1230)
118 PRK12901 secA preprotein trans 99.3 4.3E-11 9.3E-16 97.4 9.7 126 18-145 612-745 (1112)
119 PRK12899 secA preprotein trans 99.2 1.3E-10 2.9E-15 94.0 11.2 125 17-144 551-684 (970)
120 PRK13103 secA preprotein trans 99.2 1E-10 2.3E-15 94.4 9.9 124 18-144 433-594 (913)
121 KOG0392|consensus 99.2 1E-10 2.2E-15 95.9 9.1 114 34-147 1340-1460(1549)
122 KOG0389|consensus 99.2 1.9E-10 4.2E-15 90.8 10.3 126 22-147 765-894 (941)
123 KOG0923|consensus 99.2 6.5E-11 1.4E-15 92.1 7.4 108 31-139 470-604 (902)
124 KOG0388|consensus 99.2 1.3E-10 2.7E-15 91.3 8.1 124 19-145 1032-1158(1185)
125 COG4581 Superfamily II RNA hel 99.1 2.9E-10 6.3E-15 93.1 8.6 115 22-139 369-535 (1041)
126 KOG0920|consensus 99.1 2.5E-10 5.4E-15 92.5 7.5 124 16-141 396-544 (924)
127 KOG0924|consensus 99.1 1E-10 2.3E-15 91.4 4.7 108 33-141 562-697 (1042)
128 CHL00122 secA preprotein trans 99.1 2.6E-09 5.6E-14 86.2 12.2 79 19-100 409-490 (870)
129 COG0553 HepA Superfamily II DN 99.1 2E-09 4.3E-14 88.3 10.9 113 33-145 708-826 (866)
130 COG1198 PriA Primosomal protei 99.0 3.1E-09 6.8E-14 85.0 10.9 122 21-142 407-604 (730)
131 KOG1000|consensus 99.0 2.6E-09 5.6E-14 81.1 8.7 117 30-146 488-608 (689)
132 PF13307 Helicase_C_2: Helicas 99.0 3.9E-09 8.4E-14 70.9 8.6 106 33-140 8-149 (167)
133 TIGR01407 dinG_rel DnaQ family 99.0 8.1E-09 1.8E-13 85.0 11.6 106 33-141 673-814 (850)
134 COG4096 HsdR Type I site-speci 99.0 9.2E-09 2E-13 82.1 10.7 108 20-129 410-526 (875)
135 PRK12902 secA preprotein trans 98.9 2.6E-08 5.7E-13 80.7 11.2 82 18-101 423-506 (939)
136 KOG1123|consensus 98.9 3.3E-08 7.2E-13 75.4 10.7 132 8-147 520-659 (776)
137 TIGR00348 hsdR type I site-spe 98.9 4.8E-08 1E-12 78.5 11.5 108 20-128 499-634 (667)
138 KOG0949|consensus 98.8 1.2E-08 2.7E-13 82.6 6.5 77 61-137 965-1044(1330)
139 PRK08074 bifunctional ATP-depe 98.7 1.9E-07 4.1E-12 77.6 11.6 122 20-141 737-893 (928)
140 PRK07246 bifunctional ATP-depe 98.7 5.5E-07 1.2E-11 73.9 12.7 120 19-141 632-783 (820)
141 COG1199 DinG Rad3-related DNA 98.7 5.3E-07 1.1E-11 72.5 12.4 105 33-140 478-616 (654)
142 KOG0926|consensus 98.7 1.5E-08 3.3E-13 80.7 3.4 83 58-141 604-704 (1172)
143 KOG1015|consensus 98.7 8.8E-08 1.9E-12 77.8 7.6 116 21-136 1129-1270(1567)
144 PRK11747 dinG ATP-dependent DN 98.7 5.8E-07 1.3E-11 72.7 12.1 120 19-141 519-674 (697)
145 KOG0386|consensus 98.6 1.5E-07 3.2E-12 76.6 7.9 121 18-141 713-838 (1157)
146 KOG4439|consensus 98.6 5.5E-07 1.2E-11 71.2 10.6 113 33-145 745-862 (901)
147 COG4889 Predicted helicase [Ge 98.6 4.1E-08 8.9E-13 79.2 4.3 97 33-129 459-573 (1518)
148 COG1110 Reverse gyrase [DNA re 98.6 2.5E-07 5.4E-12 75.6 8.5 98 5-113 312-417 (1187)
149 KOG1002|consensus 98.6 7.3E-07 1.6E-11 68.3 9.6 128 17-144 619-752 (791)
150 KOG0925|consensus 98.5 6.6E-07 1.4E-11 68.3 8.2 107 32-143 251-389 (699)
151 COG0653 SecA Preprotein transl 98.5 2.3E-07 5E-12 74.8 5.7 123 17-142 412-546 (822)
152 PF06862 DUF1253: Protein of u 98.4 8.9E-06 1.9E-10 62.1 12.5 124 19-143 286-417 (442)
153 TIGR00604 rad3 DNA repair heli 98.4 7.1E-06 1.5E-10 66.7 12.4 122 20-141 507-674 (705)
154 smart00492 HELICc3 helicase su 98.3 1.2E-05 2.6E-10 52.5 9.2 78 63-140 26-137 (141)
155 smart00491 HELICc2 helicase su 98.2 1.4E-05 2.9E-10 52.3 8.2 71 70-140 30-138 (142)
156 TIGR03117 cas_csf4 CRISPR-asso 98.2 3.6E-05 7.8E-10 61.5 11.8 107 33-141 469-616 (636)
157 PF13871 Helicase_C_4: Helicas 97.9 8.1E-05 1.7E-09 53.7 7.3 66 74-139 51-125 (278)
158 KOG1016|consensus 97.9 4.8E-05 1E-09 61.4 6.4 104 34-137 719-843 (1387)
159 TIGR00596 rad1 DNA repair prot 97.8 8.7E-05 1.9E-09 61.0 7.7 44 13-56 268-317 (814)
160 TIGR02562 cas3_yersinia CRISPR 97.6 0.00035 7.6E-09 58.4 8.3 90 38-130 760-881 (1110)
161 PRK10917 ATP-dependent DNA hel 97.4 0.0021 4.5E-08 52.4 10.2 76 32-107 308-388 (681)
162 PRK05580 primosome assembly pr 97.3 0.003 6.6E-08 51.4 9.9 75 33-108 189-264 (679)
163 KOG1001|consensus 97.3 6.2E-05 1.4E-09 60.6 0.3 100 35-134 540-641 (674)
164 TIGR00595 priA primosomal prot 97.3 0.0018 3.9E-08 51.0 8.0 76 32-108 23-99 (505)
165 PRK14873 primosome assembly pr 97.2 0.0032 6.9E-08 51.1 9.0 87 21-108 175-263 (665)
166 TIGR00643 recG ATP-dependent D 97.2 0.0041 8.8E-08 50.3 9.5 76 32-107 282-362 (630)
167 PF02399 Herpes_ori_bp: Origin 97.1 0.0037 8.1E-08 51.2 8.7 115 15-140 267-387 (824)
168 COG1200 RecG RecG-like helicas 97.1 0.0042 9.2E-08 49.8 8.8 76 32-107 309-389 (677)
169 KOG0951|consensus 97.1 0.0032 6.9E-08 53.7 8.3 119 19-141 1344-1494(1674)
170 COG1110 Reverse gyrase [DNA re 97.1 0.0034 7.3E-08 52.4 7.9 70 22-93 115-190 (1187)
171 TIGR00580 mfd transcription-re 97.0 0.0069 1.5E-07 50.9 9.2 76 33-108 499-579 (926)
172 COG1198 PriA Primosomal protei 97.0 0.0025 5.3E-08 52.0 6.3 88 19-107 230-318 (730)
173 PRK14873 primosome assembly pr 96.9 0.0075 1.6E-07 49.0 8.8 86 42-138 439-536 (665)
174 COG1197 Mfd Transcription-repa 96.6 0.023 4.9E-07 48.3 9.5 77 32-108 641-722 (1139)
175 KOG0921|consensus 96.5 0.003 6.5E-08 52.2 3.6 106 33-139 642-772 (1282)
176 PRK10689 transcription-repair 96.4 0.032 7E-07 48.1 9.3 75 33-107 648-727 (1147)
177 KOG0298|consensus 96.3 0.0086 1.9E-07 51.1 5.3 104 24-132 1212-1315(1394)
178 PRK14701 reverse gyrase; Provi 96.2 0.064 1.4E-06 47.9 10.2 61 33-93 121-187 (1638)
179 COG0513 SrmB Superfamily II DN 96.2 0.044 9.6E-07 43.3 8.5 87 18-108 82-180 (513)
180 KOG2340|consensus 96.0 0.035 7.6E-07 43.7 6.9 110 34-143 552-670 (698)
181 KOG0701|consensus 96.0 0.0028 6.1E-08 55.3 1.2 95 35-129 293-399 (1606)
182 KOG1133|consensus 95.7 0.4 8.7E-06 39.1 11.7 133 6-141 600-780 (821)
183 TIGR01054 rgy reverse gyrase. 95.5 0.11 2.3E-06 45.2 8.5 60 33-92 120-186 (1171)
184 KOG0347|consensus 95.4 0.045 9.8E-07 43.3 5.6 56 33-92 260-321 (731)
185 PRK11776 ATP-dependent RNA hel 95.1 0.16 3.5E-06 39.5 7.8 82 22-108 61-153 (460)
186 KOG1513|consensus 95.0 0.032 6.9E-07 46.0 3.8 55 77-131 850-912 (1300)
187 PF10593 Z1: Z1 domain; Inter 94.9 0.13 2.8E-06 36.7 6.2 78 58-140 110-192 (239)
188 TIGR00614 recQ_fam ATP-depende 94.7 0.14 3E-06 40.0 6.7 59 34-92 51-109 (470)
189 PRK11634 ATP-dependent RNA hel 94.5 0.3 6.4E-06 39.8 8.2 80 23-107 64-154 (629)
190 cd00268 DEADc DEAD-box helicas 94.3 0.56 1.2E-05 32.0 8.4 82 22-107 56-148 (203)
191 TIGR01389 recQ ATP-dependent D 93.5 0.31 6.8E-06 39.2 6.6 59 34-92 53-111 (591)
192 KOG0339|consensus 93.4 0.29 6.3E-06 38.7 6.0 70 35-108 297-376 (731)
193 PRK11192 ATP-dependent RNA hel 92.5 1.2 2.6E-05 34.4 8.4 70 34-107 73-152 (434)
194 KOG0330|consensus 92.4 0.97 2.1E-05 34.6 7.3 87 16-107 112-209 (476)
195 PRK10590 ATP-dependent RNA hel 92.1 1.7 3.6E-05 34.0 8.7 69 35-107 76-154 (456)
196 PF04364 DNA_pol3_chi: DNA pol 92.1 1.3 2.8E-05 28.7 6.9 93 7-113 4-97 (137)
197 cd01524 RHOD_Pyr_redox Member 91.2 0.26 5.7E-06 29.1 2.8 38 32-69 49-86 (90)
198 PLN03137 ATP-dependent DNA hel 91.2 1 2.2E-05 39.1 7.0 59 34-92 500-560 (1195)
199 PRK11057 ATP-dependent DNA hel 91.2 1.1 2.3E-05 36.5 6.9 59 34-92 65-123 (607)
200 PRK09401 reverse gyrase; Revie 91.1 1.6 3.4E-05 38.3 8.2 60 33-92 122-187 (1176)
201 KOG0331|consensus 91.0 1.4 3E-05 35.0 7.1 72 33-108 164-245 (519)
202 KOG0383|consensus 90.9 0.29 6.3E-06 40.0 3.5 78 19-97 616-696 (696)
203 PRK01297 ATP-dependent RNA hel 90.8 2.7 5.8E-05 33.0 8.7 71 34-107 162-242 (475)
204 PRK04837 ATP-dependent RNA hel 90.7 2.5 5.5E-05 32.5 8.4 71 34-108 83-163 (423)
205 COG1205 Distinct helicase fami 90.7 1.7 3.8E-05 36.7 7.9 76 15-96 98-180 (851)
206 KOG0338|consensus 90.4 2.5 5.4E-05 33.7 7.9 97 18-118 234-343 (691)
207 cd01523 RHOD_Lact_B Member of 90.3 0.48 1E-05 28.5 3.4 38 32-69 59-96 (100)
208 PRK04537 ATP-dependent RNA hel 90.3 1.8 3.9E-05 34.9 7.5 70 34-107 84-164 (572)
209 PF00270 DEAD: DEAD/DEAH box h 89.6 3.2 7E-05 27.1 7.3 72 33-108 43-125 (169)
210 TIGR03817 DECH_helic helicase/ 88.8 2.1 4.6E-05 35.7 7.0 65 21-92 70-137 (742)
211 PRK12898 secA preprotein trans 88.3 7 0.00015 32.2 9.4 68 32-106 142-213 (656)
212 smart00450 RHOD Rhodanese Homo 88.2 0.47 1E-05 27.9 2.3 38 32-69 54-92 (100)
213 KOG0335|consensus 87.3 4.3 9.3E-05 32.0 7.3 70 34-107 152-231 (482)
214 cd01529 4RHOD_Repeats Member o 87.0 1 2.2E-05 26.9 3.2 38 32-69 54-92 (96)
215 cd01520 RHOD_YbbB Member of th 86.9 1.3 2.8E-05 28.1 3.8 38 32-69 84-122 (128)
216 PTZ00110 helicase; Provisional 86.5 2.8 6.1E-05 33.6 6.3 70 34-107 203-282 (545)
217 KOG0389|consensus 86.4 7.8 0.00017 32.6 8.6 70 22-96 437-511 (941)
218 cd01449 TST_Repeat_2 Thiosulfa 86.4 1.3 2.9E-05 27.3 3.7 36 33-68 77-113 (118)
219 cd01534 4RHOD_Repeat_3 Member 85.9 0.85 1.8E-05 27.2 2.5 37 33-69 55-91 (95)
220 TIGR00696 wecB_tagA_cpsF bacte 85.9 7.4 0.00016 26.4 7.3 56 33-88 47-104 (177)
221 TIGR00963 secA preprotein tran 85.7 9.1 0.0002 32.0 8.8 55 33-93 96-154 (745)
222 PRK13766 Hef nuclease; Provisi 85.6 7.6 0.00016 32.5 8.6 76 32-112 56-141 (773)
223 cd01448 TST_Repeat_1 Thiosulfa 84.5 1.6 3.4E-05 27.2 3.3 38 32-69 77-116 (122)
224 cd01533 4RHOD_Repeat_2 Member 84.3 1.5 3.3E-05 26.8 3.2 37 33-69 65-103 (109)
225 cd01518 RHOD_YceA Member of th 84.3 0.82 1.8E-05 27.6 1.9 38 32-69 59-97 (101)
226 COG0514 RecQ Superfamily II DN 84.2 3.7 8E-05 33.3 5.9 57 35-91 58-114 (590)
227 PF03808 Glyco_tran_WecB: Glyc 83.9 9.6 0.00021 25.6 7.1 68 19-89 36-106 (172)
228 PRK13103 secA preprotein trans 83.5 14 0.0003 31.7 9.0 57 32-94 121-181 (913)
229 cd01521 RHOD_PspE2 Member of t 83.4 1.4 3E-05 27.1 2.7 38 32-69 62-101 (110)
230 cd01526 RHOD_ThiF Member of th 83.1 1.1 2.3E-05 28.2 2.1 37 33-69 71-109 (122)
231 PF12683 DUF3798: Protein of u 83.0 2.3 4.9E-05 30.9 3.9 103 8-116 35-144 (275)
232 PRK09751 putative ATP-dependen 82.8 8.7 0.00019 34.8 8.0 71 34-108 37-130 (1490)
233 KOG0350|consensus 82.5 6.3 0.00014 31.4 6.3 88 21-108 202-301 (620)
234 COG1111 MPH1 ERCC4-like helica 82.5 8.6 0.00019 30.6 7.1 80 34-118 58-147 (542)
235 cd01528 RHOD_2 Member of the R 82.4 1.3 2.9E-05 26.6 2.3 37 33-69 57-94 (101)
236 cd01444 GlpE_ST GlpE sulfurtra 82.3 2.4 5.3E-05 25.0 3.4 37 32-68 54-91 (96)
237 cd01447 Polysulfide_ST Polysul 82.1 0.89 1.9E-05 27.3 1.5 36 33-68 60-96 (103)
238 cd01519 RHOD_HSP67B2 Member of 82.0 1.2 2.6E-05 26.9 2.0 36 33-68 65-101 (106)
239 cd01527 RHOD_YgaP Member of th 81.7 1.8 4E-05 25.8 2.7 37 32-68 52-89 (99)
240 KOG0348|consensus 81.1 7.8 0.00017 31.2 6.4 101 18-122 190-315 (708)
241 cd01532 4RHOD_Repeat_1 Member 81.1 1.7 3.8E-05 25.7 2.4 37 33-69 49-88 (92)
242 cd06533 Glyco_transf_WecG_TagA 81.1 14 0.0003 24.8 7.1 67 19-88 34-103 (171)
243 KOG1132|consensus 81.1 17 0.00037 31.0 8.5 107 34-141 561-722 (945)
244 COG0610 Type I site-specific r 80.0 3.7 7.9E-05 35.4 4.8 48 81-129 590-637 (962)
245 PRK13104 secA preprotein trans 79.7 11 0.00024 32.3 7.2 54 33-92 122-179 (896)
246 COG1157 FliI Flagellar biosynt 79.6 27 0.00058 27.3 8.7 65 20-84 204-278 (441)
247 KOG1131|consensus 79.5 26 0.00056 28.4 8.7 106 35-140 531-680 (755)
248 cd01535 4RHOD_Repeat_4 Member 79.5 4.7 0.0001 26.3 4.2 37 33-69 48-85 (145)
249 KOG0329|consensus 79.4 3.7 8E-05 29.9 3.9 70 35-108 111-191 (387)
250 cd01522 RHOD_1 Member of the R 79.4 4 8.7E-05 25.4 3.8 38 32-69 62-100 (117)
251 PRK15483 type III restriction- 79.0 2.6 5.7E-05 36.1 3.6 45 84-128 501-545 (986)
252 PRK02362 ski2-like helicase; P 78.7 9.4 0.0002 31.9 6.7 68 33-107 66-142 (737)
253 cd01525 RHOD_Kc Member of the 78.5 2.1 4.6E-05 25.8 2.3 36 34-69 65-101 (105)
254 PF01751 Toprim: Toprim domain 78.5 4.3 9.4E-05 24.5 3.7 63 38-100 2-76 (100)
255 COG3587 Restriction endonuclea 77.6 2.8 6E-05 35.4 3.2 45 84-128 483-527 (985)
256 PLN02160 thiosulfate sulfurtra 77.6 4.5 9.7E-05 26.1 3.7 38 32-69 79-117 (136)
257 PRK13767 ATP-dependent helicas 77.5 15 0.00033 31.4 7.6 55 34-92 84-154 (876)
258 PRK05728 DNA polymerase III su 77.3 6.5 0.00014 25.6 4.4 77 22-111 17-94 (142)
259 KOG0340|consensus 77.3 8.5 0.00018 29.4 5.4 71 17-92 59-133 (442)
260 PF04273 DUF442: Putative phos 77.2 5.3 0.00011 24.9 3.8 49 5-53 56-105 (110)
261 cd00046 DEXDc DEAD-like helica 77.1 14 0.0003 22.6 7.3 57 33-93 29-88 (144)
262 PRK10287 thiosulfate:cyanide s 76.8 4.7 0.0001 24.8 3.5 36 33-68 59-94 (104)
263 KOG0345|consensus 75.4 22 0.00048 28.2 7.3 90 16-108 57-163 (567)
264 COG0353 RecR Recombinational D 75.4 19 0.00042 24.9 6.3 65 33-98 77-150 (198)
265 TIGR02621 cas3_GSU0051 CRISPR- 74.9 9.1 0.0002 32.5 5.5 55 33-91 60-142 (844)
266 PRK09200 preprotein translocas 74.7 22 0.00049 30.1 7.7 55 32-92 117-176 (790)
267 PF11496 HDA2-3: Class II hist 74.4 33 0.00071 25.5 8.1 123 18-140 99-244 (297)
268 PRK09189 uroporphyrinogen-III 74.3 12 0.00026 26.4 5.5 70 21-91 105-177 (240)
269 PLN00206 DEAD-box ATP-dependen 74.0 30 0.00065 27.7 8.1 71 33-107 195-275 (518)
270 cd00158 RHOD Rhodanese Homolog 73.5 4.8 0.0001 23.0 2.9 38 32-69 48-86 (89)
271 TIGR02981 phageshock_pspE phag 73.5 7 0.00015 23.8 3.6 36 33-68 57-92 (101)
272 PF00581 Rhodanese: Rhodanese- 73.2 6.5 0.00014 23.6 3.5 38 32-69 65-108 (113)
273 PRK00162 glpE thiosulfate sulf 73.1 8.3 0.00018 23.4 4.0 38 32-69 56-94 (108)
274 PF01113 DapB_N: Dihydrodipico 73.0 18 0.00038 22.8 5.5 55 36-92 69-123 (124)
275 PRK12904 preprotein translocas 72.7 26 0.00056 29.9 7.6 54 33-92 121-178 (830)
276 COG2519 GCD14 tRNA(1-methylade 72.4 5.7 0.00012 28.7 3.4 38 22-59 176-213 (256)
277 PRK03692 putative UDP-N-acetyl 72.3 33 0.00072 24.6 7.4 55 34-88 105-161 (243)
278 PRK05320 rhodanese superfamily 72.3 3.6 7.9E-05 29.7 2.4 37 33-69 174-211 (257)
279 COG2927 HolC DNA polymerase II 71.3 26 0.00057 23.0 7.7 46 22-67 17-62 (144)
280 KOG0337|consensus 71.3 19 0.00042 28.2 6.1 84 19-108 75-170 (529)
281 PRK12899 secA preprotein trans 71.2 35 0.00075 29.6 8.0 52 35-92 136-191 (970)
282 TIGR00096 probable S-adenosylm 70.7 14 0.0003 27.1 5.2 67 36-104 26-92 (276)
283 PRK01415 hypothetical protein; 70.5 6.2 0.00013 28.4 3.2 38 32-69 169-207 (247)
284 KOG0346|consensus 70.3 13 0.00028 29.3 5.0 71 18-92 72-153 (569)
285 TIGR03167 tRNA_sel_U_synt tRNA 69.8 32 0.0007 25.6 7.0 58 23-81 63-121 (311)
286 PRK11784 tRNA 2-selenouridine 69.0 40 0.00087 25.6 7.4 48 33-81 87-135 (345)
287 PRK00254 ski2-like helicase; P 69.0 27 0.0006 29.1 7.1 68 33-107 67-143 (720)
288 KOG0334|consensus 68.6 14 0.0003 31.9 5.2 55 34-92 438-496 (997)
289 PRK08972 fliI flagellum-specif 68.4 57 0.0012 25.7 10.8 11 115-125 292-302 (444)
290 TIGR03865 PQQ_CXXCW PQQ-depend 67.3 5.7 0.00012 26.5 2.4 38 32-69 114-153 (162)
291 KOG0351|consensus 67.3 18 0.0004 31.2 5.8 56 36-91 306-363 (941)
292 PRK06646 DNA polymerase III su 66.7 18 0.0004 24.0 4.7 90 7-111 4-93 (154)
293 PTZ00424 helicase 45; Provisio 66.6 55 0.0012 24.9 8.3 71 33-107 95-175 (401)
294 cd03031 GRX_GRX_like Glutaredo 66.5 34 0.00074 22.5 5.9 45 36-80 1-52 (147)
295 PRK01172 ski2-like helicase; P 64.3 42 0.00092 27.7 7.3 53 33-92 64-119 (674)
296 cd01445 TST_Repeats Thiosulfat 64.1 13 0.00028 24.0 3.6 38 32-69 93-134 (138)
297 COG0607 PspE Rhodanese-related 64.1 4.9 0.00011 24.2 1.6 36 33-68 60-96 (110)
298 COG1922 WecG Teichoic acid bio 63.1 56 0.0012 23.7 7.7 55 34-88 108-165 (253)
299 KOG0385|consensus 62.7 1E+02 0.0022 26.5 9.1 67 22-92 205-275 (971)
300 cd01135 V_A-ATPase_B V/A-type 62.4 60 0.0013 23.9 9.1 58 35-92 101-173 (276)
301 PF09419 PGP_phosphatase: Mito 62.3 33 0.00071 23.2 5.3 45 35-83 78-130 (168)
302 cd01530 Cdc25 Cdc25 phosphatas 61.9 8.4 0.00018 24.2 2.4 38 32-69 66-117 (121)
303 COG1204 Superfamily II helicas 61.4 49 0.0011 28.1 7.2 52 34-92 76-130 (766)
304 KOG0342|consensus 61.2 34 0.00074 27.3 5.8 57 32-92 152-213 (543)
305 PRK09281 F0F1 ATP synthase sub 61.2 85 0.0019 25.2 10.2 11 115-125 294-304 (502)
306 PRK04196 V-type ATP synthase s 60.8 83 0.0018 25.0 9.7 12 115-126 280-291 (460)
307 PRK07960 fliI flagellum-specif 60.5 84 0.0018 24.9 8.0 11 115-125 305-315 (455)
308 TIGR03496 FliI_clade1 flagella 59.9 82 0.0018 24.6 10.0 8 66-73 201-208 (411)
309 PRK00142 putative rhodanese-re 59.9 7.7 0.00017 28.9 2.2 37 33-69 170-207 (314)
310 PRK09280 F0F1 ATP synthase sub 59.4 89 0.0019 24.9 9.6 10 65-74 210-219 (463)
311 COG0135 TrpF Phosphoribosylant 59.3 59 0.0013 22.8 6.7 45 34-80 53-97 (208)
312 PLN02723 3-mercaptopyruvate su 58.8 18 0.00038 27.0 3.9 38 32-69 267-305 (320)
313 PRK11493 sseA 3-mercaptopyruva 58.7 16 0.00034 26.6 3.6 38 32-69 229-267 (281)
314 TIGR03498 FliI_clade3 flagella 58.2 89 0.0019 24.5 9.9 10 115-124 270-279 (418)
315 PF02670 DXP_reductoisom: 1-de 56.7 18 0.00039 23.3 3.2 56 37-98 49-104 (129)
316 KOG0343|consensus 56.7 15 0.00032 29.9 3.2 69 19-92 123-198 (758)
317 cd01132 F1_ATPase_alpha F1 ATP 56.4 78 0.0017 23.3 9.7 64 24-88 87-164 (274)
318 cd01133 F1-ATPase_beta F1 ATP 55.8 79 0.0017 23.2 9.7 10 115-124 203-212 (274)
319 TIGR01041 ATP_syn_B_arch ATP s 55.8 1E+02 0.0022 24.5 9.8 11 115-125 278-288 (458)
320 COG3973 Superfamily I DNA and 55.2 1E+02 0.0022 25.7 7.6 89 19-125 642-736 (747)
321 COG4019 Uncharacterized protei 54.3 29 0.00064 22.3 3.7 13 95-107 86-98 (156)
322 COG4098 comFA Superfamily II D 54.1 64 0.0014 24.9 6.0 99 14-128 127-231 (441)
323 PRK06936 type III secretion sy 53.5 1.1E+02 0.0024 24.2 9.6 69 22-92 177-259 (439)
324 PF13167 GTP-bdg_N: GTP-bindin 53.4 40 0.00086 20.4 4.1 36 46-81 45-80 (95)
325 PF07652 Flavi_DEAD: Flaviviru 53.2 25 0.00054 23.2 3.4 29 30-58 29-57 (148)
326 cd01446 DSP_MapKP N-terminal r 52.6 14 0.0003 23.4 2.2 37 33-69 74-122 (132)
327 PF13245 AAA_19: Part of AAA d 52.5 34 0.00073 19.6 3.6 21 34-54 42-62 (76)
328 KOG0336|consensus 52.1 82 0.0018 24.9 6.4 72 32-107 292-372 (629)
329 TIGR00036 dapB dihydrodipicoli 51.9 89 0.0019 22.6 6.9 57 36-92 70-126 (266)
330 cd01443 Cdc25_Acr2p Cdc25 enzy 51.9 53 0.0011 20.0 4.9 36 34-69 66-109 (113)
331 cd03030 GRX_SH3BGR Glutaredoxi 51.3 52 0.0011 19.7 5.0 39 43-81 15-53 (92)
332 CHL00059 atpA ATP synthase CF1 51.2 1.3E+02 0.0028 24.2 9.6 11 115-125 273-283 (485)
333 smart00493 TOPRIM topoisomeras 50.8 43 0.00092 18.6 6.6 59 37-97 2-60 (76)
334 PRK05597 molybdopterin biosynt 50.8 14 0.00031 28.0 2.4 37 33-69 313-350 (355)
335 PRK01189 V-type ATP synthase s 49.9 34 0.00073 21.1 3.5 48 42-89 29-76 (104)
336 PRK07594 type III secretion sy 49.7 1.3E+02 0.0028 23.8 9.8 10 115-124 285-294 (433)
337 PF14417 MEDS: MEDS: MEthanoge 49.7 53 0.0011 22.3 4.9 45 11-55 24-68 (191)
338 PF10657 RC-P840_PscD: Photosy 49.3 41 0.00089 21.4 3.8 38 74-111 64-107 (144)
339 PRK05688 fliI flagellum-specif 49.2 1.3E+02 0.0029 23.8 10.5 20 50-69 249-268 (451)
340 TIGR03714 secA2 accessory Sec 49.2 1.3E+02 0.0029 25.6 7.7 55 32-92 109-172 (762)
341 PHA03371 circ protein; Provisi 48.7 22 0.00048 25.2 2.8 26 114-139 64-89 (240)
342 COG4087 Soluble P-type ATPase 48.7 55 0.0012 21.4 4.4 55 37-91 46-101 (152)
343 COG0610 Type I site-specific r 48.4 1.4E+02 0.0031 26.1 8.0 105 3-112 273-385 (962)
344 TIGR00631 uvrb excinuclease AB 48.2 1.4E+02 0.003 24.9 7.7 89 33-121 53-172 (655)
345 PRK09860 putative alcohol dehy 48.2 1.2E+02 0.0027 23.2 7.5 68 22-91 21-95 (383)
346 PF02142 MGS: MGS-like domain 48.1 13 0.00028 22.2 1.5 41 52-92 24-68 (95)
347 PRK05298 excinuclease ABC subu 47.9 1.6E+02 0.0035 24.5 8.5 88 33-121 56-175 (652)
348 smart00487 DEXDc DEAD-like hel 47.4 77 0.0017 20.6 7.1 54 34-91 54-112 (201)
349 PLN02363 phosphoribosylanthran 47.0 77 0.0017 23.0 5.5 38 34-73 100-137 (256)
350 PRK08927 fliI flagellum-specif 46.8 1.4E+02 0.0031 23.6 9.1 68 22-91 173-254 (442)
351 cd00952 CHBPH_aldolase Trans-o 46.3 84 0.0018 23.3 5.8 10 20-29 31-40 (309)
352 TIGR03305 alt_F1F0_F1_bet alte 45.5 1.5E+02 0.0033 23.5 9.6 27 65-91 204-238 (449)
353 TIGR00282 metallophosphoestera 45.0 86 0.0019 22.9 5.5 45 46-92 132-177 (266)
354 PRK01122 potassium-transportin 45.0 1.7E+02 0.0036 24.7 7.7 41 44-84 447-507 (679)
355 KOG4175|consensus 44.9 1.1E+02 0.0024 21.6 5.7 53 44-98 134-186 (268)
356 COG0300 DltE Short-chain dehyd 44.6 1.2E+02 0.0027 22.1 9.5 80 9-91 8-91 (265)
357 PRK12326 preprotein translocas 44.5 1.3E+02 0.0027 25.7 6.8 47 32-78 117-167 (764)
358 COG2217 ZntA Cation transport 44.4 1.6E+02 0.0034 25.0 7.5 100 17-124 539-656 (713)
359 PRK01221 putative deoxyhypusin 44.2 76 0.0017 23.8 5.2 50 44-93 41-91 (312)
360 smart00115 CASc Caspase, inter 44.0 1.2E+02 0.0025 21.6 8.5 83 33-121 7-105 (241)
361 COG1201 Lhr Lhr-like helicases 43.8 36 0.00078 29.0 3.8 59 46-108 89-155 (814)
362 PLN02522 ATP citrate (pro-S)-l 43.6 1.6E+02 0.0036 24.4 7.3 54 33-86 78-132 (608)
363 PF02617 ClpS: ATP-dependent C 43.5 44 0.00095 19.3 3.2 24 35-58 48-71 (82)
364 PF11576 DUF3236: Protein of u 43.3 32 0.0007 22.6 2.8 21 97-130 87-107 (154)
365 PRK13958 N-(5'-phosphoribosyl) 42.9 1.1E+02 0.0025 21.2 6.2 40 34-75 53-92 (207)
366 KOG0701|consensus 42.8 9.4 0.0002 34.7 0.4 57 72-128 709-765 (1606)
367 COG0329 DapA Dihydrodipicolina 42.7 1E+02 0.0022 22.8 5.7 22 19-43 26-47 (299)
368 PF02602 HEM4: Uroporphyrinoge 42.7 45 0.00097 23.1 3.7 68 22-92 106-176 (231)
369 COG1054 Predicted sulfurtransf 41.4 25 0.00054 26.1 2.3 36 33-68 171-207 (308)
370 PF01591 6PF2K: 6-phosphofruct 41.2 98 0.0021 21.9 5.2 42 47-88 84-126 (222)
371 PRK08762 molybdopterin biosynt 41.2 27 0.00058 26.6 2.6 37 32-68 55-92 (376)
372 PF01488 Shikimate_DH: Shikima 40.7 95 0.0021 19.7 7.2 86 21-119 25-118 (135)
373 PRK07878 molybdopterin biosynt 40.4 26 0.00057 27.0 2.4 37 32-68 341-378 (392)
374 TIGR02313 HpaI-NOT-DapA 2,4-di 40.2 1.2E+02 0.0025 22.4 5.7 28 65-92 76-104 (294)
375 PRK05752 uroporphyrinogen-III 40.1 93 0.002 22.1 5.1 58 35-92 130-190 (255)
376 PRK07411 hypothetical protein; 39.8 33 0.00072 26.4 2.9 37 33-69 341-377 (390)
377 PRK06827 phosphoribosylpyropho 39.5 1.2E+02 0.0025 23.6 5.7 49 46-95 279-330 (382)
378 TIGR01043 ATP_syn_A_arch ATP s 39.2 2.2E+02 0.0048 23.5 9.9 12 114-125 358-369 (578)
379 PRK12906 secA preprotein trans 39.1 1.4E+02 0.0029 25.7 6.4 46 32-77 119-168 (796)
380 COG0313 Predicted methyltransf 38.8 93 0.002 22.9 4.8 66 37-104 32-97 (275)
381 smart00851 MGS MGS-like domain 38.7 39 0.00085 19.8 2.6 40 52-92 24-63 (90)
382 TIGR00615 recR recombination p 38.7 1.3E+02 0.0029 20.9 5.7 62 35-97 78-148 (195)
383 PRK01222 N-(5'-phosphoribosyl) 38.5 1.4E+02 0.0029 20.9 6.5 42 34-77 55-96 (210)
384 TIGR01039 atpD ATP synthase, F 38.1 2.1E+02 0.0045 22.9 9.3 20 63-82 207-233 (461)
385 KOG2792|consensus 37.6 1.6E+02 0.0036 21.6 6.5 66 14-81 156-223 (280)
386 PRK05928 hemD uroporphyrinogen 37.6 1.1E+02 0.0024 21.2 5.2 38 22-60 113-150 (249)
387 PF00701 DHDPS: Dihydrodipicol 37.5 1.3E+02 0.0028 21.9 5.6 32 61-92 73-105 (289)
388 PRK05600 thiamine biosynthesis 37.4 41 0.00089 25.7 3.0 35 35-69 333-369 (370)
389 TIGR01866 cas_Csn2 CRISPR-asso 37.2 1.5E+02 0.0032 21.0 6.0 59 7-67 137-200 (216)
390 cd06578 HemD Uroporphyrinogen- 36.9 1.4E+02 0.003 20.5 6.2 38 22-60 110-147 (239)
391 cd00408 DHDPS-like Dihydrodipi 36.6 1.6E+02 0.0035 21.2 6.2 32 61-92 69-101 (281)
392 PRK03170 dihydrodipicolinate s 36.5 1.4E+02 0.003 21.8 5.6 7 22-28 26-32 (292)
393 PRK09629 bifunctional thiosulf 36.4 51 0.0011 27.1 3.6 37 32-68 221-258 (610)
394 TIGR03249 KdgD 5-dehydro-4-deo 36.3 1.3E+02 0.0029 22.0 5.5 12 68-79 55-66 (296)
395 cd03418 GRX_GRXb_1_3_like Glut 36.1 77 0.0017 17.3 5.4 44 37-80 2-46 (75)
396 PRK05234 mgsA methylglyoxal sy 35.9 1.2E+02 0.0027 19.7 7.4 75 9-92 8-83 (142)
397 PHA02558 uvsW UvsW helicase; P 35.6 2E+02 0.0044 22.9 6.7 23 34-56 158-180 (501)
398 PRK08118 topology modulation p 35.1 1.3E+02 0.0028 19.9 4.9 49 68-116 44-92 (167)
399 TIGR00674 dapA dihydrodipicoli 34.7 1.7E+02 0.0037 21.3 5.8 11 68-78 48-58 (285)
400 PRK09099 type III secretion sy 34.4 2.4E+02 0.0051 22.4 10.3 9 116-124 294-302 (441)
401 COG4152 ABC-type uncharacteriz 34.1 1.9E+02 0.0042 21.3 6.6 70 32-108 177-248 (300)
402 PRK13844 recombination protein 34.1 1.6E+02 0.0036 20.5 5.8 62 35-97 82-152 (200)
403 cd03028 GRX_PICOT_like Glutare 33.9 1E+02 0.0022 18.0 5.9 43 34-76 7-55 (90)
404 PF00697 PRAI: N-(5'phosphorib 33.7 1.6E+02 0.0034 20.2 5.3 48 22-72 38-85 (197)
405 COG0289 DapB Dihydrodipicolina 33.6 1.9E+02 0.0042 21.2 6.4 57 34-92 69-125 (266)
406 TIGR03324 alt_F1F0_F1_al alter 33.4 2.6E+02 0.0056 22.6 9.9 10 116-125 295-304 (497)
407 PF14824 Sirohm_synth_M: Siroh 33.2 36 0.00078 15.9 1.4 11 82-92 2-12 (30)
408 PF13380 CoA_binding_2: CoA bi 33.0 1.1E+02 0.0023 19.1 4.0 48 37-87 58-105 (116)
409 TIGR02826 RNR_activ_nrdG3 anae 33.0 1.4E+02 0.0031 19.5 6.8 55 21-76 49-106 (147)
410 cd00951 KDGDH 5-dehydro-4-deox 32.8 1.5E+02 0.0033 21.7 5.3 10 20-29 23-32 (289)
411 PF14617 CMS1: U3-containing 9 32.7 1.1E+02 0.0023 22.3 4.3 87 34-123 126-234 (252)
412 PF10740 DUF2529: Protein of u 32.6 47 0.001 22.5 2.4 32 34-65 82-115 (172)
413 COG1712 Predicted dinucleotide 32.2 2E+02 0.0043 20.8 8.2 108 3-110 22-164 (255)
414 KOG0952|consensus 31.8 2.4E+02 0.0052 25.3 6.7 69 17-92 141-219 (1230)
415 PRK12597 F0F1 ATP synthase sub 30.5 2.8E+02 0.0061 22.1 10.1 27 66-92 210-244 (461)
416 PF09711 Cas_Csn2: CRISPR-asso 30.5 1.9E+02 0.004 20.0 5.6 46 20-67 118-168 (188)
417 cd08176 LPO Lactadehyde:propan 30.4 2.5E+02 0.0054 21.4 7.8 68 22-91 18-92 (377)
418 PF09707 Cas_Cas2CT1978: CRISP 30.4 1.1E+02 0.0024 18.2 3.4 59 50-110 17-82 (86)
419 cd01134 V_A-ATPase_A V/A-type 30.3 2.6E+02 0.0056 21.6 10.4 30 63-92 225-261 (369)
420 cd00953 KDG_aldolase KDG (2-ke 30.3 1.8E+02 0.0039 21.2 5.3 33 61-93 68-101 (279)
421 PLN02417 dihydrodipicolinate s 30.1 2.2E+02 0.0047 20.7 6.0 8 34-41 35-42 (280)
422 TIGR01040 V-ATPase_V1_B V-type 29.9 2.9E+02 0.0064 22.1 9.1 14 44-57 194-207 (466)
423 KOG3201|consensus 29.7 1.9E+02 0.0041 19.8 5.6 62 21-83 120-182 (201)
424 cd00032 CASc Caspase, interleu 29.6 2.1E+02 0.0045 20.3 8.8 85 33-123 8-108 (243)
425 PF09413 DUF2007: Domain of un 29.5 63 0.0014 17.6 2.3 31 37-67 2-32 (67)
426 PF10141 ssDNA-exonuc_C: Singl 29.3 1.7E+02 0.0037 20.1 4.8 39 99-141 48-86 (195)
427 PF09664 DUF2399: Protein of u 29.0 1.7E+02 0.0038 19.3 5.5 11 61-71 68-78 (152)
428 TIGR01042 V-ATPase_V1_A V-type 29.0 3.4E+02 0.0073 22.5 9.8 12 114-125 364-375 (591)
429 PRK03620 5-dehydro-4-deoxygluc 29.0 2E+02 0.0044 21.2 5.4 7 86-92 104-110 (303)
430 COG1412 Uncharacterized protei 28.6 67 0.0015 20.9 2.5 28 36-67 99-126 (136)
431 PHA02653 RNA helicase NPH-II; 28.6 2E+02 0.0042 24.2 5.7 69 33-107 221-296 (675)
432 COG3688 Predicted RNA-binding 28.5 1.9E+02 0.0041 19.5 5.7 74 22-96 35-111 (173)
433 PRK04147 N-acetylneuraminate l 28.4 2.4E+02 0.0051 20.7 5.7 7 86-92 102-108 (293)
434 PRK10310 PTS system galactitol 28.4 1.4E+02 0.003 17.8 5.9 62 36-104 4-71 (94)
435 PF07429 Glyco_transf_56: 4-al 28.4 2.1E+02 0.0046 22.0 5.4 88 39-127 141-239 (360)
436 KOG1503|consensus 28.2 90 0.002 22.6 3.3 59 9-67 141-199 (354)
437 PRK02228 V-type ATP synthase s 28.1 1.4E+02 0.0031 18.0 5.1 50 41-90 26-76 (100)
438 TIGR02744 TrbI_Ftype type-F co 27.9 1.6E+02 0.0035 18.5 5.3 59 34-101 30-100 (112)
439 cd01294 DHOase Dihydroorotase 27.9 89 0.0019 23.3 3.5 28 69-96 219-246 (335)
440 TIGR00683 nanA N-acetylneurami 27.9 2.5E+02 0.0053 20.6 5.9 27 66-92 78-105 (290)
441 cd01452 VWA_26S_proteasome_sub 27.7 1.9E+02 0.0042 19.8 4.8 31 35-65 108-143 (187)
442 COG0074 SucD Succinyl-CoA synt 27.6 2.6E+02 0.0057 20.8 8.1 67 33-102 65-131 (293)
443 PRK14010 potassium-transportin 27.5 2.1E+02 0.0046 24.0 5.7 40 44-83 443-502 (673)
444 PF01565 FAD_binding_4: FAD bi 27.4 1E+02 0.0022 19.3 3.3 59 36-101 2-60 (139)
445 cd01531 Acr2p Eukaryotic arsen 27.4 70 0.0015 19.4 2.4 37 33-69 61-107 (113)
446 COG1435 Tdk Thymidine kinase [ 27.2 86 0.0019 21.9 2.9 38 8-45 6-43 (201)
447 TIGR01873 cas_CT1978 CRISPR-as 27.1 1.5E+02 0.0032 17.7 4.2 50 50-101 17-70 (87)
448 cd00405 PRAI Phosphoribosylant 26.9 2.1E+02 0.0046 19.5 7.3 53 22-76 38-91 (203)
449 TIGR00348 hsdR type I site-spe 26.8 3.8E+02 0.0083 22.4 7.3 73 17-95 277-350 (667)
450 KOG0372|consensus 26.6 61 0.0013 23.6 2.2 37 45-81 137-180 (303)
451 PF11823 DUF3343: Protein of u 26.5 1E+02 0.0022 17.3 2.9 26 36-61 3-28 (73)
452 PRK02118 V-type ATP synthase s 26.5 3.3E+02 0.0072 21.6 8.9 69 22-92 155-238 (436)
453 PF13344 Hydrolase_6: Haloacid 26.4 81 0.0017 19.0 2.5 36 22-60 21-57 (101)
454 PF01583 APS_kinase: Adenylyls 26.4 1.7E+02 0.0038 19.4 4.3 36 46-81 18-64 (156)
455 cd01423 MGS_CPS_I_III Methylgl 26.3 1.6E+02 0.0035 18.0 6.1 69 15-93 10-80 (116)
456 COG1519 KdtA 3-deoxy-D-manno-o 26.2 2.2E+02 0.0048 22.4 5.2 50 17-67 244-293 (419)
457 TIGR00962 atpA proton transloc 26.2 3.5E+02 0.0077 21.9 9.9 12 115-126 293-304 (501)
458 cd08179 NADPH_BDH NADPH-depend 25.9 3E+02 0.0065 21.0 6.4 57 35-91 24-88 (375)
459 KOG1002|consensus 25.7 2.7E+02 0.0058 22.9 5.7 64 22-92 220-285 (791)
460 COG0194 Gmk Guanylate kinase [ 25.6 2.4E+02 0.0051 19.6 5.7 75 48-124 57-135 (191)
461 cd00950 DHDPS Dihydrodipicolin 25.3 2.7E+02 0.0058 20.2 5.6 6 87-92 99-104 (284)
462 PF08704 GCD14: tRNA methyltra 25.2 39 0.00085 24.3 1.1 39 19-60 127-165 (247)
463 KOG1502|consensus 25.2 3.1E+02 0.0067 20.8 6.9 74 42-115 14-91 (327)
464 COG0426 FpaA Uncharacterized f 24.9 3.4E+02 0.0073 21.2 8.1 55 42-99 259-313 (388)
465 KOG1180|consensus 24.8 4.1E+02 0.0089 22.1 8.6 75 34-111 115-194 (678)
466 COG2607 Predicted ATPase (AAA+ 24.8 1.2E+02 0.0027 22.1 3.5 35 6-43 113-147 (287)
467 PRK13019 clpS ATP-dependent Cl 24.6 1.7E+02 0.0037 17.7 3.8 27 33-59 62-88 (94)
468 PF14091 DUF4269: Domain of un 24.5 2.2E+02 0.0048 19.0 4.7 44 74-121 7-50 (152)
469 COG0602 NrdG Organic radical a 24.4 2.2E+02 0.0048 19.9 4.7 50 17-67 55-108 (212)
470 cd00379 Ribosomal_L10_P0 Ribos 24.0 2.1E+02 0.0045 18.5 5.9 45 46-90 6-50 (155)
471 COG0052 RpsB Ribosomal protein 23.9 2E+02 0.0043 20.9 4.3 41 14-55 44-84 (252)
472 PF04210 MtrG: Tetrahydrometha 23.8 40 0.00087 19.1 0.7 14 114-127 31-45 (70)
473 cd00532 MGS-like MGS-like doma 23.6 1.8E+02 0.004 17.7 6.0 71 12-93 6-77 (112)
474 cd03027 GRX_DEP Glutaredoxin ( 23.6 1.4E+02 0.003 16.3 5.6 53 36-88 2-55 (73)
475 PF00466 Ribosomal_L10: Riboso 23.6 1.7E+02 0.0037 17.3 4.8 36 47-82 10-45 (100)
476 COG1587 HemD Uroporphyrinogen- 23.0 2.8E+02 0.0061 19.6 6.2 71 21-92 110-183 (248)
477 PRK13343 F0F1 ATP synthase sub 22.9 4.1E+02 0.009 21.5 10.3 11 115-125 294-304 (502)
478 COG2247 LytB Putative cell wal 22.9 3.5E+02 0.0075 20.6 6.6 58 22-81 66-123 (337)
479 cd08194 Fe-ADH6 Iron-containin 22.8 3.5E+02 0.0076 20.6 7.9 68 22-91 13-87 (375)
480 cd01011 nicotinamidase Nicotin 22.7 2E+02 0.0043 19.6 4.2 20 50-69 129-148 (196)
481 PF02863 Arg_repressor_C: Argi 22.7 63 0.0014 18.1 1.4 23 34-56 47-69 (70)
482 KOG0386|consensus 22.5 2.4E+02 0.0051 25.2 5.1 57 32-92 442-501 (1157)
483 KOG1137|consensus 22.5 2.8E+02 0.0061 22.9 5.3 36 58-93 413-450 (668)
484 cd08190 HOT Hydroxyacid-oxoaci 22.5 3.8E+02 0.0082 20.9 7.7 57 35-91 24-87 (414)
485 PF00258 Flavodoxin_1: Flavodo 22.4 1.8E+02 0.0039 18.3 3.8 24 42-65 9-32 (143)
486 cd08172 GlyDH-like1 Glycerol d 22.4 3.4E+02 0.0074 20.4 8.5 50 42-92 60-109 (347)
487 COG1335 PncA Amidases related 22.2 2.2E+02 0.0047 19.3 4.3 47 49-95 123-169 (205)
488 PF09010 AsiA: Anti-Sigma Fact 22.0 43 0.00093 20.1 0.7 20 65-84 59-78 (91)
489 TIGR00537 hemK_rel_arch HemK-r 21.9 2.5E+02 0.0054 18.6 4.5 41 22-62 121-161 (179)
490 PRK10824 glutaredoxin-4; Provi 21.9 2.2E+02 0.0047 17.9 4.4 31 34-64 14-50 (115)
491 PF00731 AIRC: AIR carboxylase 21.9 2.5E+02 0.0054 18.6 5.7 56 36-91 2-62 (150)
492 cd02131 PA_hNAALADL2_like PA_h 21.9 2.6E+02 0.0055 18.7 6.1 59 37-97 18-78 (153)
493 PRK00805 putative deoxyhypusin 21.8 3.2E+02 0.0069 20.8 5.3 50 44-93 32-83 (329)
494 PF00782 DSPc: Dual specificit 21.6 1.7E+02 0.0036 18.1 3.4 26 18-43 57-82 (133)
495 PRK01269 tRNA s(4)U8 sulfurtra 21.5 1.8E+02 0.0039 23.2 4.2 33 32-64 447-479 (482)
496 PRK13107 preprotein translocas 21.5 5.4E+02 0.012 22.7 7.0 55 32-92 121-179 (908)
497 PF02713 DUF220: Domain of unk 21.5 73 0.0016 18.2 1.5 21 110-130 53-73 (74)
498 COG1168 MalY Bifunctional PLP- 21.5 84 0.0018 24.3 2.2 95 35-129 159-266 (388)
499 cd01012 YcaC_related YcaC rela 21.3 2.4E+02 0.0053 18.3 4.4 11 103-113 114-124 (157)
500 KOG1255|consensus 21.1 3.4E+02 0.0074 19.9 7.5 72 20-93 84-155 (329)
No 1
>KOG0331|consensus
Probab=99.97 E-value=1.1e-30 Score=197.47 Aligned_cols=138 Identities=36% Similarity=0.563 Sum_probs=118.3
Q ss_pred CeeEEEeecchhhHHHHHHHHHHhcc-CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy17637 6 GVAYTLVTDKDKEFAGHLVRNLEGAN-QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
++.++....+...+...|.+.|.... ....++||||+|++.|++|...|...++++..+||+.++.+|..+++.|++|+
T Consensus 312 ~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~ 391 (519)
T KOG0331|consen 312 NIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGK 391 (519)
T ss_pred chhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCC
Confidence 34444444444444444444444331 46779999999999999999999998999999999999999999999999999
Q ss_pred ceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 85 CRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 85 ~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
..|||||+++++|+|+|++++|||||+|.+.++|+||+||+||.|+.|.++.|++..+.
T Consensus 392 ~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~ 450 (519)
T KOG0331|consen 392 SPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNA 450 (519)
T ss_pred cceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHH
Confidence 99999999999999999999999999999999999999999999999999999987643
No 2
>KOG0328|consensus
Probab=99.97 E-value=9.2e-31 Score=183.17 Aligned_cols=139 Identities=31% Similarity=0.550 Sum_probs=125.1
Q ss_pred cCeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy17637 5 KGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
+|++.++...+..+|...-+..+... ....+++|||||+..++.|.+++...++.+...||+|++++|.+++..|++|.
T Consensus 238 EgIKqf~v~ve~EewKfdtLcdLYd~-LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~ 316 (400)
T KOG0328|consen 238 EGIKQFFVAVEKEEWKFDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGK 316 (400)
T ss_pred hhhhhheeeechhhhhHhHHHHHhhh-hehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCC
Confidence 46777777777777555555555444 47789999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCc
Q psy17637 85 CRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144 (150)
Q Consensus 85 ~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 144 (150)
.+||++|+++++|+|+|.+++|||||+|.+.+.|++|+||+||.|+.|.++.|+..++.+
T Consensus 317 SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~ 376 (400)
T KOG0328|consen 317 SRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLR 376 (400)
T ss_pred ceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887653
No 3
>KOG0333|consensus
Probab=99.96 E-value=2.7e-29 Score=187.62 Aligned_cols=134 Identities=39% Similarity=0.613 Sum_probs=120.7
Q ss_pred EEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEE
Q psy17637 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRIL 88 (150)
Q Consensus 9 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 88 (150)
+.+....+.++...|+..+... -.+|+|||+|+++.|+.|++.|.+.++++..+||+-++++|+.+++.|+.|...||
T Consensus 494 Q~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIl 571 (673)
T KOG0333|consen 494 QKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDIL 571 (673)
T ss_pred eEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEE
Confidence 3333334444455677777665 67899999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCc
Q psy17637 89 VATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144 (150)
Q Consensus 89 v~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 144 (150)
|||+++++|||+|++++|||||+++++.+|.||+||+||.|+.|.++.|+++.+..
T Consensus 572 VaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 572 VATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTA 627 (673)
T ss_pred EEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhH
Confidence 99999999999999999999999999999999999999999999999999998754
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.7e-29 Score=192.50 Aligned_cols=135 Identities=44% Similarity=0.637 Sum_probs=118.4
Q ss_pred cCeeEEEeecchhh-HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC
Q psy17637 5 KGVAYTLVTDKDKE-FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ 83 (150)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 83 (150)
..+.+.+...+... +. .++..+... ....++||||+|+..++.|+..|...|+++..+||+|++++|.+.++.|++|
T Consensus 245 ~~i~q~~~~v~~~~~k~-~~L~~ll~~-~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g 322 (513)
T COG0513 245 KKIKQFYLEVESEEEKL-ELLLKLLKD-EDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDG 322 (513)
T ss_pred cCceEEEEEeCCHHHHH-HHHHHHHhc-CCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcC
Confidence 44555555555443 44 444444444 3445799999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecC
Q psy17637 84 ECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 84 ~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
+.+|||||+++++|+|+|++++|||||+|.+++.|+||+||+||.|..|.++.|+++.
T Consensus 323 ~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 323 ELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred CCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 9999999999999999999999999999999999999999999999999999999874
No 5
>PTZ00110 helicase; Provisional
Probab=99.96 E-value=1.4e-28 Score=191.30 Aligned_cols=126 Identities=37% Similarity=0.604 Sum_probs=113.9
Q ss_pred hHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCccc
Q psy17637 18 EFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97 (150)
Q Consensus 18 ~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 97 (150)
.+...|.+.+........++||||++++.++.++..|...++.+..+||++++++|..+++.|++|+.+|||||+++++|
T Consensus 361 ~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rG 440 (545)
T PTZ00110 361 EKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRG 440 (545)
T ss_pred hHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcC
Confidence 33445555554442356799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 98 idi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+|+|++++||+|++|.++.+|+||+||+||.|..|.+++|+++.+.
T Consensus 441 IDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 441 LDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchH
Confidence 9999999999999999999999999999999999999999987654
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=6.1e-29 Score=188.58 Aligned_cols=125 Identities=38% Similarity=0.527 Sum_probs=112.8
Q ss_pred hhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcc
Q psy17637 17 KEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96 (150)
Q Consensus 17 ~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 96 (150)
..+...+...+.. ....++||||++++.++.++..|...++.+..+||+|++++|..+++.|++|+.+|||||+++++
T Consensus 240 ~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~r 317 (423)
T PRK04837 240 EEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAAR 317 (423)
T ss_pred HHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhc
Confidence 3344444444443 35678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 97 Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|+|+|++++||+|++|.+..+|+||+||+||.|+.|.+++|+++++.
T Consensus 318 GiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 318 GLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred CCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 99999999999999999999999999999999999999999987643
No 7
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=2.8e-28 Score=186.99 Aligned_cols=124 Identities=23% Similarity=0.355 Sum_probs=114.0
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccC
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGL 98 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 98 (150)
....++..+... .+..++||||++++.++.++..|...++.+..+||+|++++|..+++.|++|+++|||||+++++|+
T Consensus 212 ~~~~l~~~l~~~-~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GI 290 (470)
T TIGR00614 212 ILEDLLRFIRKE-FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGI 290 (470)
T ss_pred HHHHHHHHHHHh-cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccC
Confidence 445666666643 4566789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 99 DIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 99 di~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|+|++++||++++|.+++.|+|++||+||.|..+.++++++..|.
T Consensus 291 D~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~ 335 (470)
T TIGR00614 291 NKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADI 335 (470)
T ss_pred CcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHH
Confidence 999999999999999999999999999999999999999987654
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.96 E-value=4.6e-28 Score=185.49 Aligned_cols=131 Identities=40% Similarity=0.674 Sum_probs=115.7
Q ss_pred EEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy17637 10 TLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILV 89 (150)
Q Consensus 10 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 89 (150)
.+.......+...+...+... ...++||||++++.++.+++.|...++.+..+||+|++.+|+.+++.|++|+.+|||
T Consensus 220 ~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLV 297 (460)
T PRK11776 220 RFYEVSPDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLV 297 (460)
T ss_pred EEEEeCcHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 333333333445555555443 567899999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 90 ATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 90 ~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
||+++++|+|+|++++||++++|.+..+|+||+||+||.|..|.+++|+++.+
T Consensus 298 aTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e 350 (460)
T PRK11776 298 ATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEE 350 (460)
T ss_pred EecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhH
Confidence 99999999999999999999999999999999999999999999999998764
No 9
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.96 E-value=7.4e-28 Score=183.19 Aligned_cols=121 Identities=40% Similarity=0.594 Sum_probs=111.2
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCc
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDI 100 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 100 (150)
..++..+... ....++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+.+++|+|+
T Consensus 233 ~~~l~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDi 311 (434)
T PRK11192 233 TALLCHLLKQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDI 311 (434)
T ss_pred HHHHHHHHhc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccC
Confidence 3455555543 356799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 101 PHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 101 ~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
|++++||+|++|.+...|+||+||+||.|..|.++++++..+
T Consensus 312 p~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d 353 (434)
T PRK11192 312 DDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHD 353 (434)
T ss_pred CCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHH
Confidence 999999999999999999999999999999999999997654
No 10
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.96 E-value=4.7e-28 Score=195.80 Aligned_cols=137 Identities=21% Similarity=0.350 Sum_probs=117.7
Q ss_pred CcCeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC
Q psy17637 4 NKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ 83 (150)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 83 (150)
+.++.|.+.. +.......+...+... ....++||||.+++.++.++..|...|+.+..+||+|++++|..+++.|..|
T Consensus 652 RpNL~y~Vv~-k~kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~G 729 (1195)
T PLN03137 652 RPNLWYSVVP-KTKKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKD 729 (1195)
T ss_pred ccceEEEEec-cchhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcC
Confidence 3455555443 3333334555555433 3456899999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 84 ECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 84 ~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
+++|||||+++++|||+|++++||+|++|++++.|+|++|||||.|.++.|++|+...|
T Consensus 730 ei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D 788 (1195)
T PLN03137 730 EINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 788 (1195)
T ss_pred CCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHH
Confidence 99999999999999999999999999999999999999999999999999999997543
No 11
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.95 E-value=1.1e-27 Score=185.46 Aligned_cols=125 Identities=34% Similarity=0.560 Sum_probs=111.9
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccc-cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCccc
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV-KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 97 (150)
+...+.+.+........++||||+++..++.++..|.. .++.+..+||+|++++|..+++.|++|+.+|||||+++++|
T Consensus 352 k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rG 431 (518)
T PLN00206 352 KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRG 431 (518)
T ss_pred HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhcc
Confidence 34456666654433456899999999999999999974 58899999999999999999999999999999999999999
Q ss_pred CCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 98 idi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+|+|++++||+|++|.+..+|+||+||+||.|..|.+++|++.++.
T Consensus 432 iDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 432 VDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 9999999999999999999999999999999999999999987653
No 12
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=1.2e-27 Score=186.73 Aligned_cols=128 Identities=36% Similarity=0.519 Sum_probs=114.8
Q ss_pred ecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 13 ~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
...+..+...++..+... ...++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+
T Consensus 238 ~~~~~~k~~~L~~ll~~~--~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd 315 (572)
T PRK04537 238 FPADEEKQTLLLGLLSRS--EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD 315 (572)
T ss_pred ecCHHHHHHHHHHHHhcc--cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh
Confidence 333444445555555443 677999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 93 VAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 93 ~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
++++|+|+|++++||+|+.|.+...|+||+||+||.|..|.+++|+.+.+
T Consensus 316 v~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 316 VAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred hhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 99999999999999999999999999999999999999999999997653
No 13
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.95 E-value=1.5e-27 Score=187.57 Aligned_cols=120 Identities=25% Similarity=0.423 Sum_probs=112.2
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCc
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDI 100 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 100 (150)
..++..+... ...++||||+|++.++.++..|...++.+..+||+|++++|.++++.|+.|+.+|||||+++++|+|+
T Consensus 225 ~~l~~~l~~~--~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDi 302 (607)
T PRK11057 225 DQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINK 302 (607)
T ss_pred HHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCC
Confidence 4566666554 67799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 101 PHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 101 ~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
|++++||++++|.+.++|+|++||+||.|.++.+++|++..+
T Consensus 303 p~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d 344 (607)
T PRK11057 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (607)
T ss_pred CCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHH
Confidence 999999999999999999999999999999999999998765
No 14
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.95 E-value=1.8e-27 Score=181.99 Aligned_cols=121 Identities=36% Similarity=0.542 Sum_probs=111.4
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCcc
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIP 101 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 101 (150)
.++..+... ....++||||++++.++.+++.|...++.+..+||+|++++|.++++.|++|+++|||||+++++|+|+|
T Consensus 234 ~~l~~l~~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip 312 (456)
T PRK10590 234 ELLSQMIGK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIE 312 (456)
T ss_pred HHHHHHHHc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcc
Confidence 455555544 4567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 102 HIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 102 ~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
++++||+|++|.++.+|+||+||+||.|..|.+++|++..+.
T Consensus 313 ~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 313 ELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred cCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHH
Confidence 999999999999999999999999999999999999987653
No 15
>KOG0330|consensus
Probab=99.95 E-value=4.8e-28 Score=175.46 Aligned_cols=125 Identities=41% Similarity=0.512 Sum_probs=115.7
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCcc
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIP 101 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 101 (150)
.|+..+.+. .+.++||||++-.....++-.|...|+.+..+||.|+++.|...++.|+.|...|||||++.++|+|+|
T Consensus 290 yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip 367 (476)
T KOG0330|consen 290 YLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIP 367 (476)
T ss_pred hHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCC
Confidence 455555554 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCccccc
Q psy17637 102 HIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELR 148 (150)
Q Consensus 102 ~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~~ 148 (150)
.+++|||||.|.+..+|++|+||++|.|+.|.++.|++..|.+-++|
T Consensus 368 ~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qr 414 (476)
T KOG0330|consen 368 HVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQR 414 (476)
T ss_pred CceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHH
Confidence 99999999999999999999999999999999999999877665554
No 16
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=3.5e-27 Score=181.27 Aligned_cols=111 Identities=33% Similarity=0.528 Sum_probs=106.2
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDL 111 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~ 111 (150)
....++||||++++.++.+++.|...++.+..+||++++++|.++++.|++|++.+||||+++++|+|+|++++||++++
T Consensus 333 ~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~ 412 (475)
T PRK01297 333 NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL 412 (475)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 112 ARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 112 ~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
|.+..+|+||+||+||.|..|.+++|++++|
T Consensus 413 P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 413 PEDPDDYVHRIGRTGRAGASGVSISFAGEDD 443 (475)
T ss_pred CCCHHHHHHhhCccCCCCCCceEEEEecHHH
Confidence 9999999999999999999999999998763
No 17
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.95 E-value=7.7e-27 Score=183.55 Aligned_cols=123 Identities=40% Similarity=0.605 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCccc
Q psy17637 18 EFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97 (150)
Q Consensus 18 ~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 97 (150)
.+...+...+... ...++||||+|+..++.+++.|...++.+..+||+|++.+|.++++.|++|+++|||||+++++|
T Consensus 231 ~k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arG 308 (629)
T PRK11634 231 RKNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARG 308 (629)
T ss_pred hHHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcC
Confidence 3444555555443 56789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 98 idi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
+|+|++++||+|++|.+..+|+||+||+||.|+.|.+++|+++.+
T Consensus 309 IDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e 353 (629)
T PRK11634 309 LDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 (629)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHH
Confidence 999999999999999999999999999999999999999998654
No 18
>PTZ00424 helicase 45; Provisional
Probab=99.95 E-value=3.6e-27 Score=177.72 Aligned_cols=112 Identities=35% Similarity=0.668 Sum_probs=106.7
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLA 112 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~ 112 (150)
...++||||++++.++.+++.|...++.+..+||+|++++|..+++.|++|+++|||||+.+++|+|+|++++||++++|
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p 345 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLP 345 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhhccccCCCCccEEEEEEecCCCc
Q psy17637 113 RDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144 (150)
Q Consensus 113 ~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 144 (150)
.+..+|+||+||+||.|..|.++.|+++.+..
T Consensus 346 ~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~ 377 (401)
T PTZ00424 346 ASPENYIHRIGRSGRFGRKGVAINFVTPDDIE 377 (401)
T ss_pred CCHHHEeecccccccCCCCceEEEEEcHHHHH
Confidence 99999999999999999999999999876543
No 19
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=6.3e-27 Score=179.81 Aligned_cols=112 Identities=29% Similarity=0.418 Sum_probs=108.3
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDL 111 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~ 111 (150)
....+.||||.|++.+|.++++|...|+.+..||++|+.++|+.+.++|..++..|+|||.+++||||-|++.+||||++
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecC
Confidence 46677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 112 ARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 112 ~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|.|+++|+|.+|||||.|.++.+++|+.+.|.
T Consensus 308 P~s~EsYyQE~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 308 PGSIESYYQETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred CCCHHHHHHHHhhccCCCCcceEEEeeccccH
Confidence 99999999999999999999999999998874
No 20
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.95 E-value=1.3e-26 Score=182.17 Aligned_cols=134 Identities=22% Similarity=0.399 Sum_probs=116.6
Q ss_pred cCeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy17637 5 KGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
+++.+....... ....+++.+... ...++||||+|++.++.+++.|...++.+..+||+|++++|..+++.|..|+
T Consensus 199 ~nl~~~v~~~~~--~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~ 274 (591)
T TIGR01389 199 PNLRFSVVKKNN--KQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDD 274 (591)
T ss_pred CCcEEEEEeCCC--HHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 344444433332 234566666554 4678999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 85 CRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 85 ~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
++|||||+++++|+|+|++++||++++|.++++|+|++||+||.|.++.++++++..+
T Consensus 275 ~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d 332 (591)
T TIGR01389 275 VKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPAD 332 (591)
T ss_pred CcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHH
Confidence 9999999999999999999999999999999999999999999999999998887654
No 21
>KOG0332|consensus
Probab=99.94 E-value=3.5e-26 Score=165.18 Aligned_cols=129 Identities=36% Similarity=0.567 Sum_probs=115.6
Q ss_pred chhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCC
Q psy17637 15 KDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVA 94 (150)
Q Consensus 15 ~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 94 (150)
....+...|.+ |... -..++.||||.|++.+.+|+..|...|+.+..+||.|+-.+|..++..|+.|..+|||+|+++
T Consensus 313 ~~~~K~~~l~~-lyg~-~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ 390 (477)
T KOG0332|consen 313 CRDDKYQALVN-LYGL-LTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVC 390 (477)
T ss_pred chhhHHHHHHH-HHhh-hhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechh
Confidence 34444455555 5444 477899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccCCcEEEEecCCC------ChhHHHHhhccccCCCCccEEEEEEecCCCcc
Q psy17637 95 ARGLDIPHIRTVVNYDLAR------DIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145 (150)
Q Consensus 95 ~~Gidi~~~~~vi~~~~~~------~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~ 145 (150)
.+|+|++.++.|||||+|. +.+.|++|+||+||.|+.|.++.++...+...
T Consensus 391 ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~ 447 (477)
T KOG0332|consen 391 ARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMN 447 (477)
T ss_pred hcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHH
Confidence 9999999999999999996 78999999999999999999999988776543
No 22
>KOG0341|consensus
Probab=99.93 E-value=1.9e-26 Score=167.76 Aligned_cols=125 Identities=35% Similarity=0.652 Sum_probs=116.0
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCcc
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIP 101 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 101 (150)
.++-.+....+..+|++|||..+..++.+.++|.-+|+.++.+||+-++++|...++.|+.|+..|||+|++.+.|+|+|
T Consensus 409 KiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp 488 (610)
T KOG0341|consen 409 KIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFP 488 (610)
T ss_pred hhhhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCc
Confidence 45555555556789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCccc
Q psy17637 102 HIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGE 146 (150)
Q Consensus 102 ~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~ 146 (150)
++.+|||||+|..++.|++|+||+||.|..|.+.+|+++......
T Consensus 489 ~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esv 533 (610)
T KOG0341|consen 489 DIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESV 533 (610)
T ss_pred cchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHH
Confidence 999999999999999999999999999999999999998766544
No 23
>KOG0326|consensus
Probab=99.93 E-value=2.2e-26 Score=163.71 Aligned_cols=113 Identities=35% Similarity=0.603 Sum_probs=108.9
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLA 112 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~ 112 (150)
..++.|||||+...+|.++.+..+.|+.+.++|+.|.++.|..+.-.|++|.++.||||+.+.+|+|++.+++|||||+|
T Consensus 321 qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfp 400 (459)
T KOG0326|consen 321 QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFP 400 (459)
T ss_pred cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCC
Confidence 67799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhhccccCCCCccEEEEEEecCCCcc
Q psy17637 113 RDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145 (150)
Q Consensus 113 ~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~ 145 (150)
++.++|++|+||+||.|..|.++.+++-+|...
T Consensus 401 k~aEtYLHRIGRsGRFGhlGlAInLityedrf~ 433 (459)
T KOG0326|consen 401 KNAETYLHRIGRSGRFGHLGLAINLITYEDRFN 433 (459)
T ss_pred CCHHHHHHHccCCccCCCcceEEEEEehhhhhh
Confidence 999999999999999999999999999876544
No 24
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.93 E-value=9.9e-26 Score=180.18 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=102.0
Q ss_pred CCCeeEEehhhhhHHHHHhhcccc--------CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcE
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVK--------EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~ 105 (150)
..++||||+|++.++.++..|... +.++..+||++++++|.++++.|++|++++||||+++++|+|+|++++
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~ 350 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDA 350 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccE
Confidence 579999999999999999987653 467889999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCc
Q psy17637 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144 (150)
Q Consensus 106 vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 144 (150)
||+++.|.+..+|+||+||+||.|+.|.+++++.....+
T Consensus 351 VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d 389 (742)
T TIGR03817 351 VVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLD 389 (742)
T ss_pred EEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHH
Confidence 999999999999999999999999999999888754333
No 25
>KOG0340|consensus
Probab=99.93 E-value=3.2e-25 Score=159.31 Aligned_cols=122 Identities=40% Similarity=0.594 Sum_probs=111.6
Q ss_pred HHHHHHHhccC-CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCc
Q psy17637 22 HLVRNLEGANQ-EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDI 100 (150)
Q Consensus 22 ~ll~~l~~~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 100 (150)
.++..+....+ +...++||+++...|+.|+..|+...+.+..+|+.|++.+|...+.+|+++..+|||||+++++|+|+
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI 320 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI 320 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC
Confidence 44444444322 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 101 PHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 101 ~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|.+.+|+|+|.|.++.+|++|+||+.|.|+.|.++.++++.|-
T Consensus 321 P~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv 363 (442)
T KOG0340|consen 321 PTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDV 363 (442)
T ss_pred CceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhH
Confidence 9999999999999999999999999999999999999996553
No 26
>KOG0335|consensus
Probab=99.93 E-value=4.5e-25 Score=165.00 Aligned_cols=138 Identities=36% Similarity=0.583 Sum_probs=122.4
Q ss_pred CcCeeEEEeecchhhHHHHHHHHHHhccC--CC-----CCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHH
Q psy17637 4 NKGVAYTLVTDKDKEFAGHLVRNLEGANQ--EV-----PPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSV 76 (150)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~-----~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 76 (150)
.+++.+.+....+..+...|++.+..... .. ..++|||.|++.++++...|...++++..+||.-++.+|.+.
T Consensus 300 ~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~a 379 (482)
T KOG0335|consen 300 SENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQA 379 (482)
T ss_pred cccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHH
Confidence 45555555556666666778888875531 22 379999999999999999999999999999999999999999
Q ss_pred HHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecC
Q psy17637 77 ITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 77 ~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
++.|++|...+||||+++++|+|+|++++||+||+|.+..+|++||||+||.|..|.+..|++..
T Consensus 380 l~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~ 444 (482)
T KOG0335|consen 380 LNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEK 444 (482)
T ss_pred HHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999843
No 27
>KOG0336|consensus
Probab=99.92 E-value=6.6e-25 Score=160.64 Aligned_cols=136 Identities=35% Similarity=0.587 Sum_probs=120.0
Q ss_pred eeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCce
Q psy17637 7 VAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECR 86 (150)
Q Consensus 7 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 86 (150)
+.+.+....+.++. .+++.+...-....++||||.++..++.|...|...|+..-.+||+-++.+|+..++.|++|+++
T Consensus 439 VkQ~i~v~~d~~k~-~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vr 517 (629)
T KOG0336|consen 439 VKQNIIVTTDSEKL-EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVR 517 (629)
T ss_pred eeeeEEecccHHHH-HHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceE
Confidence 33444444444443 56666666557788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 87 ILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 87 vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|||+|+..++|+|+++++||++||+|.++++|++|+||+||.|+.|..+.|++..|-
T Consensus 518 ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~ 574 (629)
T KOG0336|consen 518 ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDW 574 (629)
T ss_pred EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhH
Confidence 999999999999999999999999999999999999999999999999999987654
No 28
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.92 E-value=9.9e-24 Score=135.73 Aligned_cols=119 Identities=39% Similarity=0.529 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCccc
Q psy17637 18 EFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97 (150)
Q Consensus 18 ~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 97 (150)
.+...+.+.+.+......++||||++.+.++.++..|...+..+..+||++++.++..+++.|..+...+|++|+.+++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 34456666666653467899999999999999999998888899999999999999999999999999999999999999
Q ss_pred CCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEE
Q psy17637 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYT 136 (150)
Q Consensus 98 idi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~ 136 (150)
+|+|.+++||++++|++...+.|++||++|.|+.+.+++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEe
Confidence 999999999999999999999999999999998777665
No 29
>KOG0342|consensus
Probab=99.91 E-value=2.1e-24 Score=160.30 Aligned_cols=131 Identities=34% Similarity=0.454 Sum_probs=116.2
Q ss_pred EeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEE
Q psy17637 11 LVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVA 90 (150)
Q Consensus 11 ~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 90 (150)
.+.+.+.. +..+...+.+. -...++||||+|-..+..+++.|....+++..+||+.++..|..+...|...+.-||||
T Consensus 309 vv~~~~~~-f~ll~~~LKk~-~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~c 386 (543)
T KOG0342|consen 309 VVAPSDSR-FSLLYTFLKKN-IKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVC 386 (543)
T ss_pred Eeccccch-HHHHHHHHHHh-cCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEe
Confidence 33444443 44566666665 33389999999999999999999988999999999999999999999999999999999
Q ss_pred cCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 91 TDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 91 T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|++.++|+|+|++++||.+++|.++.+|+||+||+||.|..|.+++++.+.+.
T Consensus 387 TDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El 439 (543)
T KOG0342|consen 387 TDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWEL 439 (543)
T ss_pred cchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHH
Confidence 99999999999999999999999999999999999999999999999987654
No 30
>KOG0344|consensus
Probab=99.91 E-value=8e-24 Score=159.96 Aligned_cols=122 Identities=33% Similarity=0.520 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhc-cccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCccc
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSL-TVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 97 (150)
++..+-+.+... -.+|++||+.+.+.+..|+..| ...++.+..+||+.++.+|...+++|+.|++++|+||+.+++|
T Consensus 374 K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RG 451 (593)
T KOG0344|consen 374 KLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARG 451 (593)
T ss_pred HHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhcc
Confidence 334444444444 5679999999999999999999 7789999999999999999999999999999999999999999
Q ss_pred CCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 98 idi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
+|+.+++.||+||+|.+.-+|++|+||+||.|+.|.+++|+++++
T Consensus 452 iDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d 496 (593)
T KOG0344|consen 452 IDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQD 496 (593)
T ss_pred ccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEecccc
Confidence 999999999999999999999999999999999999999999854
No 31
>KOG0345|consensus
Probab=99.90 E-value=1.3e-23 Score=155.55 Aligned_cols=134 Identities=30% Similarity=0.482 Sum_probs=116.8
Q ss_pred eeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcccc--CceEEEecCCCCHHHHHHHHHHhhcCC
Q psy17637 7 VAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK--EYDVLLLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 7 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
+..++...+..++...++..+.+. ...++|||++|=..++.....|... ...+..+||.|.+..|.+++..|....
T Consensus 230 L~~~Y~v~~a~eK~~~lv~~L~~~--~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~ 307 (567)
T KOG0345|consen 230 LALEYLVCEADEKLSQLVHLLNNN--KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLS 307 (567)
T ss_pred hcceeeEecHHHHHHHHHHHHhcc--ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhcc
Confidence 444555555566667888888775 7889999999988888777776543 567999999999999999999999977
Q ss_pred ceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 85 CRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 85 ~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
..+|+||+++++|+|+|++++||+||+|.+++.|+||+||++|.|+.|.+++|+.+.+
T Consensus 308 ~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E 365 (567)
T KOG0345|consen 308 NGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPRE 365 (567)
T ss_pred CceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccH
Confidence 7899999999999999999999999999999999999999999999999999988743
No 32
>KOG0351|consensus
Probab=99.90 E-value=1.1e-23 Score=169.54 Aligned_cols=141 Identities=19% Similarity=0.306 Sum_probs=128.4
Q ss_pred CCcCeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc
Q psy17637 3 GNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82 (150)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 82 (150)
+++++.|.+...+.......++..+... .+..+.||||.++..||.+...|...++.+..||+||++++|..+...|..
T Consensus 455 nR~NL~yeV~~k~~~~~~~~~~~~~~~~-~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~ 533 (941)
T KOG0351|consen 455 NRPNLKYEVSPKTDKDALLDILEESKLR-HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMS 533 (941)
T ss_pred CCCCceEEEEeccCccchHHHHHHhhhc-CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhc
Confidence 3567778777777555556677777666 788999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCc
Q psy17637 83 QECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144 (150)
Q Consensus 83 g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 144 (150)
++++|+|||=+++||||.|++..||+|+.|++.+.|+|.+|||||.|..+.|++|+...+..
T Consensus 534 ~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~ 595 (941)
T KOG0351|consen 534 DKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADIS 595 (941)
T ss_pred CCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999887543
No 33
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.90 E-value=5.2e-23 Score=166.67 Aligned_cols=118 Identities=22% Similarity=0.300 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhc-cccCceEEEecCCCCHHHHHHHHHHhhcC--CceEEEEcCCCc
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSL-TVKEYDVLLLHGDMDQSERNSVITKFKRQ--ECRILVATDVAA 95 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv~T~~~~ 95 (150)
++..|++.+... ...++||||++++.++.+.+.| ...|+++..+||+|++.+|.++++.|+++ ...|||||++++
T Consensus 480 Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 480 RVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred HHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 445666666554 5779999999999999999999 46699999999999999999999999984 589999999999
Q ss_pred ccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEE
Q psy17637 96 RGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138 (150)
Q Consensus 96 ~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~ 138 (150)
+|+|++.+++||+||+|+++..|.||+||++|.|+.+.+.+++
T Consensus 558 eGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~ 600 (956)
T PRK04914 558 EGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHV 600 (956)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999999999887654443
No 34
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.90 E-value=4.4e-23 Score=167.66 Aligned_cols=119 Identities=24% Similarity=0.297 Sum_probs=100.3
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcccc------CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCc
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK------EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAA 95 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 95 (150)
.+...+........++||||+|++.++.++..|... +..+..+||+|++++|..+++.|++|++++||||+.++
T Consensus 272 ~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le 351 (876)
T PRK13767 272 ALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLE 351 (876)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHH
Confidence 334444433234678999999999999999998762 45799999999999999999999999999999999999
Q ss_pred ccCCccCCcEEEEecCCCChhHHHHhhccccCCC-CccEEEEEEec
Q psy17637 96 RGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAG-NKGVAYTLVTD 140 (150)
Q Consensus 96 ~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g-~~~~~~~~~~~ 140 (150)
+|+|+|++++||+++.|.+..+|+||+||+||.+ ..+..++++..
T Consensus 352 ~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 352 LGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred hcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 9999999999999999999999999999999864 34445544443
No 35
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=7.3e-23 Score=152.95 Aligned_cols=125 Identities=28% Similarity=0.391 Sum_probs=107.4
Q ss_pred HHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEE-Eec--------CCCCHHHHHHHHHHhhcCCceEEEE
Q psy17637 20 AGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVL-LLH--------GDMDQSERNSVITKFKRQECRILVA 90 (150)
Q Consensus 20 ~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~-~~~--------~~~~~~~r~~~~~~f~~g~~~vlv~ 90 (150)
+..++...... ....++|||++.++.++.+.+.|...+..+. .+- .||+++++.+++++|+.|+.+||||
T Consensus 353 l~eilke~~~k-~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVa 431 (542)
T COG1111 353 LREILKEQLEK-NGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVA 431 (542)
T ss_pred HHHHHHHHHhc-CCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEE
Confidence 33444444433 4568999999999999999999998877663 222 4699999999999999999999999
Q ss_pred cCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCccc
Q psy17637 91 TDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGE 146 (150)
Q Consensus 91 T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~ 146 (150)
|++.++|+|+|.++.||+|++..|+-.++||.||+||. +.|.+++|+++.+.++.
T Consensus 432 TSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrdea 486 (542)
T COG1111 432 TSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRDEA 486 (542)
T ss_pred cccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchHHH
Confidence 99999999999999999999999999999999999999 68999999998866554
No 36
>KOG0347|consensus
Probab=99.90 E-value=4.7e-24 Score=160.55 Aligned_cols=128 Identities=32% Similarity=0.406 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHhccC-------------CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy17637 18 EFAGHLVRNLEGANQ-------------EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 18 ~~~~~ll~~l~~~~~-------------~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
.....|++.+.++.. =.+++|||||+++.+..|+..|+..++....+|+.|.+++|.+.+++|++..
T Consensus 434 ~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~ 513 (731)
T KOG0347|consen 434 ATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSP 513 (731)
T ss_pred hHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCC
Confidence 344566666665521 1478999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCcc
Q psy17637 85 CRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145 (150)
Q Consensus 85 ~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~ 145 (150)
..|||||+++.+|+|||++.|||+|.+|.+.+.|++|.||+.|.+..|..+.++.+.+...
T Consensus 514 ~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 514 SGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGP 574 (731)
T ss_pred CeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHH
Confidence 9999999999999999999999999999999999999999999999999999999887443
No 37
>KOG0327|consensus
Probab=99.89 E-value=4.2e-23 Score=149.49 Aligned_cols=137 Identities=33% Similarity=0.582 Sum_probs=123.2
Q ss_pred cCeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy17637 5 KGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
+++.+++.......++..+.+... ...+.+|||||++.+..+..+|...+..+..+||.|.+.+|..++..|+.|.
T Consensus 238 ~gikq~~i~v~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gs 313 (397)
T KOG0327|consen 238 EGIKQFYINVEKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGS 313 (397)
T ss_pred hheeeeeeeccccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCC
Confidence 456677776666656666666555 4568999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCcc
Q psy17637 85 CRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145 (150)
Q Consensus 85 ~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~ 145 (150)
.+|||+|+.+++|+|+..++.|++|+.|.....|++|+||+||.|..|.++.++++.+..+
T Consensus 314 srvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~ 374 (397)
T KOG0327|consen 314 SRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRD 374 (397)
T ss_pred ceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999876654
No 38
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.89 E-value=3.9e-22 Score=161.80 Aligned_cols=110 Identities=25% Similarity=0.371 Sum_probs=102.1
Q ss_pred CCCCCeeEEehhhhhHHHHHhhcccc--CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEe
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVK--EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~ 109 (150)
..+.++++||++++.++.+++.|... +.++..+||+|++++|.+++++|++|+.+|||||+++++|+|+|++++||++
T Consensus 658 ~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~ 737 (926)
T TIGR00580 658 LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIE 737 (926)
T ss_pred HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEe
Confidence 34678999999999999999999863 7789999999999999999999999999999999999999999999999999
Q ss_pred cCCC-ChhHHHHhhccccCCCCccEEEEEEecC
Q psy17637 110 DLAR-DIDTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 110 ~~~~-~~~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
+.|. +..+|.|++||+||.|+.|.|++++...
T Consensus 738 ~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 738 RADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred cCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9875 7889999999999999999999998764
No 39
>KOG0338|consensus
Probab=99.89 E-value=4.6e-23 Score=154.18 Aligned_cols=110 Identities=37% Similarity=0.583 Sum_probs=105.3
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCCC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLAR 113 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~ 113 (150)
..++|||+.|++.+..+.-.|--.|+++.-+||.+++.+|...++.|+.+++++||||+++++|+||+++..||||++|.
T Consensus 426 ~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~ 505 (691)
T KOG0338|consen 426 QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPK 505 (691)
T ss_pred ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCch
Confidence 46899999999999999888888899999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 114 DIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 114 ~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+...|+||+||+.|.|+.|..+.|+.+.+.
T Consensus 506 t~e~Y~HRVGRTARAGRaGrsVtlvgE~dR 535 (691)
T KOG0338|consen 506 TIEHYLHRVGRTARAGRAGRSVTLVGESDR 535 (691)
T ss_pred hHHHHHHHhhhhhhcccCcceEEEeccccH
Confidence 999999999999999999999999988753
No 40
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=3.4e-22 Score=158.95 Aligned_cols=125 Identities=19% Similarity=0.273 Sum_probs=111.9
Q ss_pred hhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcc
Q psy17637 17 KEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96 (150)
Q Consensus 17 ~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 96 (150)
..+...++..+........|+||||+|.+.++.++..|...++++..+||.+.+.++..+...++.| .|+|||+++++
T Consensus 411 ~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgR 488 (790)
T PRK09200 411 DEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGR 488 (790)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhc
Confidence 3455677777766545788999999999999999999999999999999999998888887777766 79999999999
Q ss_pred cCCc---cCCc-----EEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 97 GLDI---PHIR-----TVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 97 Gidi---~~~~-----~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|+|+ |.+. +||++++|.+...|.|++||+||.|++|.++.|++.+|.
T Consensus 489 G~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 489 GTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred CcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 9999 6898 999999999999999999999999999999999987654
No 41
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.88 E-value=8.2e-22 Score=156.87 Aligned_cols=120 Identities=28% Similarity=0.373 Sum_probs=101.3
Q ss_pred HHHHHHHhccCCCCCeeEEehhhh--------hHHHHHhhcccc--CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQL--------NAEELANSLTVK--EYDVLLLHGDMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~--------~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
.+++.+......+.+++|||+..+ .++.+++.|... ++++..+||+|++++|..++++|++|+.+|||||
T Consensus 459 ~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT 538 (681)
T PRK10917 459 EVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVAT 538 (681)
T ss_pred HHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEC
Confidence 344444443356789999998543 455666666544 4689999999999999999999999999999999
Q ss_pred CCCcccCCccCCcEEEEecCCC-ChhHHHHhhccccCCCCccEEEEEEecC
Q psy17637 92 DVAARGLDIPHIRTVVNYDLAR-DIDTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 92 ~~~~~Gidi~~~~~vi~~~~~~-~~~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
+++++|+|+|++++||+++.|. +.+.+.|++||+||.|..|.|++++...
T Consensus 539 ~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~ 589 (681)
T PRK10917 539 TVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDP 589 (681)
T ss_pred cceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCC
Confidence 9999999999999999999987 6889999999999999999999999643
No 42
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=4.9e-22 Score=155.29 Aligned_cols=125 Identities=22% Similarity=0.262 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcc
Q psy17637 17 KEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96 (150)
Q Consensus 17 ~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 96 (150)
..+...|++.+........++||||+|++.++.++..|...++++..+||.+++ ++..+..|..+...|+|||+++++
T Consensus 456 ~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgR 533 (656)
T PRK12898 456 AAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGR 533 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhc
Confidence 334556777776654456789999999999999999999999999999998654 445555566666689999999999
Q ss_pred cCCcc---CCc-----EEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 97 GLDIP---HIR-----TVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 97 Gidi~---~~~-----~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|+|++ ++. +||+++.|.+...|.|++||+||.|++|.+++|++.+|.
T Consensus 534 GtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 534 GTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred ccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 99998 565 999999999999999999999999999999999987653
No 43
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.88 E-value=1.2e-22 Score=120.02 Aligned_cols=77 Identities=40% Similarity=0.700 Sum_probs=74.3
Q ss_pred hccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCC
Q psy17637 53 SLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAG 129 (150)
Q Consensus 53 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g 129 (150)
.|...++++..+||++++++|..+++.|+++...+||+|+.+++|+|+|.+++||++++|+++..|.|++||++|.|
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999986
No 44
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.88 E-value=9.5e-22 Score=155.14 Aligned_cols=123 Identities=23% Similarity=0.330 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccC
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGL 98 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 98 (150)
.+..++..+......+.++||||+|++.++.+++.|...++++..+||++++.+|.+++..|+.|++.|||||+.+++|+
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 45578888877666788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCcEEEEec-----CCCChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 99 DIPHIRTVVNYD-----LARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 99 di~~~~~vi~~~-----~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
|+|++++|++++ .|.+..+|+|++||+||. ..|.++++++..+
T Consensus 507 DiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~ 554 (655)
T TIGR00631 507 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKIT 554 (655)
T ss_pred eeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCC
Confidence 999999999988 799999999999999998 5788988888654
No 45
>KOG0348|consensus
Probab=99.88 E-value=7e-22 Score=148.55 Aligned_cols=113 Identities=35% Similarity=0.529 Sum_probs=102.3
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccc----------------------cCceEEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTV----------------------KEYDVLLLHGDMDQSERNSVITKFKRQECRILV 89 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 89 (150)
++..++|||+++.+.+++-+..|.. .+.++..+||+|++++|..+++.|....-.||+
T Consensus 423 ~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLL 502 (708)
T KOG0348|consen 423 EEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLL 502 (708)
T ss_pred hhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEE
Confidence 4566999999999999988777743 144588999999999999999999998888999
Q ss_pred EcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCc
Q psy17637 90 ATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144 (150)
Q Consensus 90 ~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 144 (150)
||++.++|+|+|.+.+||.||+|.+.++|++|+||+.|.|..|..++|+.+.+.+
T Consensus 503 cTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eae 557 (708)
T KOG0348|consen 503 CTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAE 557 (708)
T ss_pred ehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHH
Confidence 9999999999999999999999999999999999999999999999998877654
No 46
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.87 E-value=2.3e-21 Score=153.27 Aligned_cols=118 Identities=28% Similarity=0.401 Sum_probs=101.4
Q ss_pred HHHHHHHhccCCCCCeeEEehhh--------hhHHHHHhhccc--cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQ--------LNAEELANSLTV--KEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~--------~~~~~l~~~L~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
.++..+.+....+.+++|||+.. ..++.+++.|.. .++.+..+||+|++++|..+++.|++|+.+|||||
T Consensus 436 ~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT 515 (630)
T TIGR00643 436 IVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVAT 515 (630)
T ss_pred HHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEC
Confidence 45555554434678999999875 345566666654 36789999999999999999999999999999999
Q ss_pred CCCcccCCccCCcEEEEecCCC-ChhHHHHhhccccCCCCccEEEEEEe
Q psy17637 92 DVAARGLDIPHIRTVVNYDLAR-DIDTHTHRIGRTGRAGNKGVAYTLVT 139 (150)
Q Consensus 92 ~~~~~Gidi~~~~~vi~~~~~~-~~~~~~q~~GR~~R~g~~~~~~~~~~ 139 (150)
+++++|+|+|++++||+++.|. +.+.|.|++||+||.|..|.|++++.
T Consensus 516 ~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 516 TVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred ceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999999999986 78899999999999999999999984
No 47
>KOG0343|consensus
Probab=99.87 E-value=7.3e-22 Score=149.01 Aligned_cols=132 Identities=30% Similarity=0.412 Sum_probs=114.2
Q ss_pred EEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccc--cCceEEEecCCCCHHHHHHHHHHhhcCCceE
Q psy17637 10 TLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV--KEYDVLLLHGDMDQSERNSVITKFKRQECRI 87 (150)
Q Consensus 10 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 87 (150)
+++......++..|-..|.. +...+.|||++|-+++..+++.+.. .|+++..+||.|++..|..+...|-.....|
T Consensus 291 ~y~~v~l~~Ki~~L~sFI~s--hlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~v 368 (758)
T KOG0343|consen 291 SYVIVPLEDKIDMLWSFIKS--HLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVV 368 (758)
T ss_pred eEEEEehhhHHHHHHHHHHh--ccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceE
Confidence 33333333344455555544 4777999999999999999998864 5889999999999999999999999988899
Q ss_pred EEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 88 LVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 88 lv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|+||+++++|+|+|.++|||.+|.|.+.++|++|+||+.|.+..|.+++++++.+.
T Consensus 369 LF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 369 LFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred EEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhH
Confidence 99999999999999999999999999999999999999999999999999998774
No 48
>KOG0339|consensus
Probab=99.87 E-value=9.8e-22 Score=147.17 Aligned_cols=132 Identities=58% Similarity=0.857 Sum_probs=122.1
Q ss_pred eecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 12 VTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 12 ~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
+.+.+..++.+|+..|... ...+++|+|+.-+..+++++..|+-.++.+..+||+|.+.+|.+++..|+.+...|||+|
T Consensus 447 V~~s~~~Kl~wl~~~L~~f-~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~Vlvat 525 (731)
T KOG0339|consen 447 VCPSEEKKLNWLLRHLVEF-SSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVAT 525 (731)
T ss_pred eccCcHHHHHHHHHHhhhh-ccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEe
Confidence 3344555678999999887 556799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCc
Q psy17637 92 DVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144 (150)
Q Consensus 92 ~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 144 (150)
++..+|+|++.+..||+||+..+++.|.||+||+||.|..|..|.++++.|..
T Consensus 526 DvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 526 DVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred eHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHH
Confidence 99999999999999999999999999999999999999999999999987654
No 49
>KOG0350|consensus
Probab=99.87 E-value=5.3e-22 Score=148.07 Aligned_cols=130 Identities=27% Similarity=0.416 Sum_probs=113.2
Q ss_pred cchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcc----ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy17637 14 DKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLT----VKEYDVLLLHGDMDQSERNSVITKFKRQECRILV 89 (150)
Q Consensus 14 ~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 89 (150)
.+...+...+...+... +..++|+|+++.+.+..++..|+ ..+.++..++|+++.+.|.+.+..|..|++++||
T Consensus 411 ~~~~~kpl~~~~lI~~~--k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLI 488 (620)
T KOG0350|consen 411 TEPKFKPLAVYALITSN--KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLI 488 (620)
T ss_pred cccccchHhHHHHHHHh--hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEE
Confidence 33333344555555554 78899999999999988888776 4466788899999999999999999999999999
Q ss_pred EcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCcc
Q psy17637 90 ATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145 (150)
Q Consensus 90 ~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~ 145 (150)
|++++++|+|+.++++||+||+|-+...|++|+||++|.|+.|.++.++++.+.+-
T Consensus 489 cSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~ 544 (620)
T KOG0350|consen 489 CSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRL 544 (620)
T ss_pred ehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchH
Confidence 99999999999999999999999999999999999999999999999999887643
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.87 E-value=3.6e-21 Score=159.03 Aligned_cols=109 Identities=23% Similarity=0.315 Sum_probs=98.9
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc--CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEec
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK--EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYD 110 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~ 110 (150)
..++++|||++++.++.+++.|... +.++..+||+|++++|.+++.+|++|+.+|||||+++++|+|+|++++||..+
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ 887 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEec
Confidence 4578999999999999999998765 67899999999999999999999999999999999999999999999999665
Q ss_pred CC-CChhHHHHhhccccCCCCccEEEEEEecC
Q psy17637 111 LA-RDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 111 ~~-~~~~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
.+ .+...|+|++||+||.|..|.+++++...
T Consensus 888 ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred CCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 54 46788999999999999999999888654
No 51
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.86 E-value=1.8e-21 Score=162.53 Aligned_cols=107 Identities=20% Similarity=0.222 Sum_probs=93.0
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccC---------------------------------ceEEEecCCCCHHHHHHHHHH
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKE---------------------------------YDVLLLHGDMDQSERNSVITK 79 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~---------------------------------~~~~~~~~~~~~~~r~~~~~~ 79 (150)
...++||||||+..+|.++..|+... ..+..+||+|++++|..+++.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 45789999999999999998886431 125689999999999999999
Q ss_pred hhcCCceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCC-CccEEEEEEe
Q psy17637 80 FKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAG-NKGVAYTLVT 139 (150)
Q Consensus 80 f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g-~~~~~~~~~~ 139 (150)
|++|++++||||+.+++|||++.+++||+++.|.+..+|+||+||+||.. ..+.++++..
T Consensus 323 fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 323 LKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred HHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 99999999999999999999999999999999999999999999999963 3345554443
No 52
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.86 E-value=6.6e-21 Score=150.91 Aligned_cols=121 Identities=25% Similarity=0.339 Sum_probs=111.0
Q ss_pred HHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCC
Q psy17637 20 AGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLD 99 (150)
Q Consensus 20 ~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 99 (150)
+..+++.+......+.++||||+|++.++.|++.|...++++..+||++++.+|..++..|+.|.+.|+|||+.+++|+|
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfd 511 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 511 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcc
Confidence 45777778776567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEecC-----CCChhHHHHhhccccCCCCccEEEEEEecC
Q psy17637 100 IPHIRTVVNYDL-----ARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 100 i~~~~~vi~~~~-----~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
+|++++||+++. |.+..+|+|++||+||. ..|.++.|++..
T Consensus 512 lp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~ 557 (652)
T PRK05298 512 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (652)
T ss_pred ccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCC
Confidence 999999998875 78999999999999996 678999998843
No 53
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.86 E-value=6.1e-21 Score=150.91 Aligned_cols=123 Identities=20% Similarity=0.205 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCccc
Q psy17637 18 EFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97 (150)
Q Consensus 18 ~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 97 (150)
.+...++..+......+.|+||||+|++.++.+...|...++++..+||.+.+.++..+...++.| .|+|||+++++|
T Consensus 408 ~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRG 485 (762)
T TIGR03714 408 EKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRG 485 (762)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccc
Confidence 345577777776556789999999999999999999999999999999999998888887777666 799999999999
Q ss_pred CCcc---------CCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 98 LDIP---------HIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 98 idi~---------~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+|++ ++++|+++++|..... .|++||+||.|++|.+++|++.+|.
T Consensus 486 tDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 486 TDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred cCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 9999 9999999999988766 9999999999999999999988654
No 54
>PRK02362 ski2-like helicase; Provisional
Probab=99.86 E-value=2.7e-21 Score=155.37 Aligned_cols=110 Identities=24% Similarity=0.354 Sum_probs=96.4
Q ss_pred CCCCCeeEEehhhhhHHHHHhhcccc------------------------------------CceEEEecCCCCHHHHHH
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVK------------------------------------EYDVLLLHGDMDQSERNS 75 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~------------------------------------~~~~~~~~~~~~~~~r~~ 75 (150)
....++||||+|++.++.++..|... ...+.++||+|++++|..
T Consensus 241 ~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ 320 (737)
T PRK02362 241 EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHREL 320 (737)
T ss_pred HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHH
Confidence 35679999999999999888777532 125889999999999999
Q ss_pred HHHHhhcCCceEEEEcCCCcccCCccCCcEEEE----ec-----CCCChhHHHHhhccccCCCCc--cEEEEEEecC
Q psy17637 76 VITKFKRQECRILVATDVAARGLDIPHIRTVVN----YD-----LARDIDTHTHRIGRTGRAGNK--GVAYTLVTDK 141 (150)
Q Consensus 76 ~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~----~~-----~~~~~~~~~q~~GR~~R~g~~--~~~~~~~~~~ 141 (150)
+++.|++|.++|||||+.+++|+|+|...+||. |+ .|.+..+|.||+|||||.|.+ |.+++++...
T Consensus 321 ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 321 VEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred HHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 999999999999999999999999999999996 65 588999999999999999864 7888888664
No 55
>PRK13766 Hef nuclease; Provisional
Probab=99.85 E-value=1.3e-20 Score=152.35 Aligned_cols=123 Identities=27% Similarity=0.419 Sum_probs=108.0
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCC--------CCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGD--------MDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
..+++.+... ....++||||++++.++.|++.|...++.+..+||. |++.+|..+++.|++|+..+||+|+
T Consensus 353 ~~il~~~~~~-~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~ 431 (773)
T PRK13766 353 REIVKEQLGK-NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTS 431 (773)
T ss_pred HHHHHHHHhc-CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 3344443332 467899999999999999999998889888899886 9999999999999999999999999
Q ss_pred CCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCcc
Q psy17637 93 VAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145 (150)
Q Consensus 93 ~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~ 145 (150)
++++|+|+|.+++||+|++|+++..|+||+||+||.| ++.++.++...+.++
T Consensus 432 ~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ee 483 (773)
T PRK13766 432 VAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTRDE 483 (773)
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCChHH
Confidence 9999999999999999999999999999999999987 478888888766544
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.85 E-value=1.5e-20 Score=139.98 Aligned_cols=108 Identities=23% Similarity=0.366 Sum_probs=91.7
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCc--eEEEecCCCCHHHHHH----HHHHhhcCCceEEEEcCCCcccCCccCCcE
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEY--DVLLLHGDMDQSERNS----VITKFKRQECRILVATDVAARGLDIPHIRT 105 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~----~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~ 105 (150)
....++||||++++.++.++..|...+. .+..+||++++.+|.+ +++.|++|...+||||+++++|+|++ +++
T Consensus 220 ~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~ 298 (358)
T TIGR01587 220 KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADV 298 (358)
T ss_pred hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCE
Confidence 4567999999999999999999987665 5899999999999976 48899999999999999999999995 788
Q ss_pred EEEecCCCChhHHHHhhccccCCCCcc----EEEEEEecCC
Q psy17637 106 VVNYDLARDIDTHTHRIGRTGRAGNKG----VAYTLVTDKD 142 (150)
Q Consensus 106 vi~~~~~~~~~~~~q~~GR~~R~g~~~----~~~~~~~~~~ 142 (150)
+|++..| +++|+||+||+||.|... .++++....+
T Consensus 299 vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 299 MITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred EEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 8887666 789999999999988542 5566655443
No 57
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.85 E-value=1.4e-20 Score=148.29 Aligned_cols=123 Identities=21% Similarity=0.261 Sum_probs=113.7
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccC
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGL 98 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 98 (150)
+...+++.+......+.|+||||+|.+.++.+...|...+++...+|+. +.+|+..+..|..+...|+|||+++++|+
T Consensus 390 k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGt 467 (745)
T TIGR00963 390 KWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGT 467 (745)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCc
Confidence 4467888886666789999999999999999999999999999999998 88999999999999999999999999999
Q ss_pred CccC-------CcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 99 DIPH-------IRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 99 di~~-------~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|++. ..+||+++.|.|...|.|++||+||.|++|.+.+|++.+|.
T Consensus 468 DI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 468 DIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred CCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 9987 45999999999999999999999999999999999998764
No 58
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.85 E-value=1.5e-20 Score=145.41 Aligned_cols=102 Identities=18% Similarity=0.200 Sum_probs=95.2
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEc-CCCcccCCccCCcEEEEec
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT-DVAARGLDIPHIRTVVNYD 110 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~Gidi~~~~~vi~~~ 110 (150)
..+.+++|||.+.++++.|++.|...+.++..+||+|+.++|..+++.|++|+..+||+| +.+++|+|+|++++||++.
T Consensus 342 ~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~ 421 (501)
T PHA02558 342 KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAH 421 (501)
T ss_pred hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEec
Confidence 356789999999999999999999999999999999999999999999999998999998 8999999999999999999
Q ss_pred CCCChhHHHHhhccccCCCCccE
Q psy17637 111 LARDIDTHTHRIGRTGRAGNKGV 133 (150)
Q Consensus 111 ~~~~~~~~~q~~GR~~R~g~~~~ 133 (150)
+++|...|+|++||++|.+..+.
T Consensus 422 p~~s~~~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 422 PSKSKIIVLQSIGRVLRKHGSKS 444 (501)
T ss_pred CCcchhhhhhhhhccccCCCCCc
Confidence 99999999999999999886543
No 59
>KOG0334|consensus
Probab=99.85 E-value=6.7e-21 Score=151.83 Aligned_cols=134 Identities=37% Similarity=0.504 Sum_probs=121.0
Q ss_pred eeEEEeecc-hhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCc
Q psy17637 7 VAYTLVTDK-DKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQEC 85 (150)
Q Consensus 7 ~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 85 (150)
+...+.-.. +.+++..|+..|... ....++||||...+.|+.+...|.+.++.+..+||+.++.+|..++++|+++.+
T Consensus 586 V~q~v~V~~~e~eKf~kL~eLl~e~-~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~ 664 (997)
T KOG0334|consen 586 VTQVVRVCAIENEKFLKLLELLGER-YEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVV 664 (997)
T ss_pred ceEEEEEecCchHHHHHHHHHHHHH-hhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCc
Confidence 333333333 566677888888777 558899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecC
Q psy17637 86 RILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 86 ~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
.+||+|+.+++|+|+..+.+||+|++|...+.|++|.||+||.|+.|.+++|+++.
T Consensus 665 ~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~ 720 (997)
T KOG0334|consen 665 NLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPD 720 (997)
T ss_pred eEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChH
Confidence 99999999999999999999999999999999999999999999999999999984
No 60
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.85 E-value=9.8e-21 Score=152.30 Aligned_cols=110 Identities=26% Similarity=0.409 Sum_probs=100.4
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc---cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEe
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV---KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~ 109 (150)
..+++|||+++..+++.+++.|.. .++.+.++||+|++++|.++++.|.+|..+|+|||++++.|+|+|++++||++
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~ 287 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDS 287 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEc
Confidence 357899999999999999999976 47889999999999999999999999999999999999999999999999999
Q ss_pred cCCC------------------ChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 110 DLAR------------------DIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 110 ~~~~------------------~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+.++ |.+++.||+||+||. .+|.||.++++.+.
T Consensus 288 Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 288 GLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred CcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 9875 346789999999999 69999999987654
No 61
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.85 E-value=1e-20 Score=149.33 Aligned_cols=118 Identities=19% Similarity=0.284 Sum_probs=99.8
Q ss_pred HHHHHHhcc-CCCCCeeEEehhhhhHHHHHhhcccc--CceEEEecCCCCHHHHHHHHHHh-hcCCceEEEEcCCCcccC
Q psy17637 23 LVRNLEGAN-QEVPPALMNLAMQLNAEELANSLTVK--EYDVLLLHGDMDQSERNSVITKF-KRQECRILVATDVAARGL 98 (150)
Q Consensus 23 ll~~l~~~~-~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~vlv~T~~~~~Gi 98 (150)
++..+.... ....++|||+++++.++.+++.|... ++.+.++||+|++. ++.+++| ++|+.+|||||+.+++|+
T Consensus 383 ~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGI 460 (675)
T PHA02653 383 IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSV 460 (675)
T ss_pred HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccc
Confidence 444444321 24568999999999999999999876 68999999999975 4666777 689999999999999999
Q ss_pred CccCCcEEEEec---CCC---------ChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 99 DIPHIRTVVNYD---LAR---------DIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 99 di~~~~~vi~~~---~~~---------~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|+|++++||+++ .|. |.++|.||+||+||. .+|.|+.|+++.+.
T Consensus 461 DIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 461 TIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred cccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 999999999998 554 888999999999999 68999999987653
No 62
>KOG4284|consensus
Probab=99.85 E-value=5.8e-21 Score=146.45 Aligned_cols=112 Identities=37% Similarity=0.512 Sum_probs=107.0
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDL 111 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~ 111 (150)
-+..++||||+....|+-++..|...|+.+.++.|.|++++|..+++.++.-..+|||+|+..++|||-+++++|||.|+
T Consensus 270 ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~ 349 (980)
T KOG4284|consen 270 IPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDA 349 (980)
T ss_pred CchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCC
Confidence 47789999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred CCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 112 ARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 112 ~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|-+...|.+|+|||||.|..|..++|+.....
T Consensus 350 p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 350 PADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred CcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999998876655
No 63
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=3.5e-20 Score=147.08 Aligned_cols=125 Identities=19% Similarity=0.301 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcc
Q psy17637 17 KEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96 (150)
Q Consensus 17 ~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 96 (150)
..+...+++.+......+.|+||||+|++.++.++..|...+++...+|+.+...++..+...++.|. |+|||+++++
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGR 500 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGR 500 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccC
Confidence 34556788888766578999999999999999999999999999999999999888888878777775 9999999999
Q ss_pred cCCcc---CCc-----EEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 97 GLDIP---HIR-----TVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 97 Gidi~---~~~-----~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|+||+ ++. +||+++.|.+...|.|++||+||.|++|.+.++++.+|.
T Consensus 501 GtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 501 GTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred CCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 99994 788 999999999999999999999999999999999998854
No 64
>KOG0352|consensus
Probab=99.83 E-value=8.2e-21 Score=139.95 Aligned_cols=112 Identities=21% Similarity=0.356 Sum_probs=107.1
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCCC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLAR 113 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~ 113 (150)
.+..||||.|++.||.++-.|...|+.+..||+|+...+|.++-+.|.+++..|+++|..+++|+|-|++.+||++++|.
T Consensus 255 ~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 255 TGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred CcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhccccCCCCccEEEEEEecCCCcc
Q psy17637 114 DIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145 (150)
Q Consensus 114 ~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~ 145 (150)
++..|.|..||+||.|.+++|-+++..+|.+.
T Consensus 335 n~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred hhHHHHHhccccccCCCccceeeeecccchHH
Confidence 99999999999999999999999998877653
No 65
>KOG0346|consensus
Probab=99.83 E-value=2.4e-20 Score=137.58 Aligned_cols=139 Identities=24% Similarity=0.331 Sum_probs=118.4
Q ss_pred cCeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy17637 5 KGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
..+.++.+.+.+.++...+...+. ...-.++.|||+||.+.|-.|.-.|..-|++.+.+.|+||.+.|..++++|..|-
T Consensus 240 dqL~Qy~v~cse~DKflllyallK-L~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~ 318 (569)
T KOG0346|consen 240 DQLTQYQVKCSEEDKFLLLYALLK-LRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGL 318 (569)
T ss_pred ccceEEEEEeccchhHHHHHHHHH-HHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcc
Confidence 445555655656555555554443 3246779999999999999999999888999999999999999999999999999
Q ss_pred ceEEEEcC-----------------------------------CCcccCCccCCcEEEEecCCCChhHHHHhhccccCCC
Q psy17637 85 CRILVATD-----------------------------------VAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAG 129 (150)
Q Consensus 85 ~~vlv~T~-----------------------------------~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g 129 (150)
.+++|||+ -.++|||+..+++|+|||+|.+..+|++|+||++|.+
T Consensus 319 YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~ 398 (569)
T KOG0346|consen 319 YDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGN 398 (569)
T ss_pred eeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCC
Confidence 99999998 1357999999999999999999999999999999999
Q ss_pred CccEEEEEEecCCCc
Q psy17637 130 NKGVAYTLVTDKDKD 144 (150)
Q Consensus 130 ~~~~~~~~~~~~~~~ 144 (150)
++|.++.|+.+.+..
T Consensus 399 n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 399 NKGTALSFVSPKEEF 413 (569)
T ss_pred CCCceEEEecchHHh
Confidence 999999999876543
No 66
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.83 E-value=3.3e-20 Score=149.40 Aligned_cols=110 Identities=25% Similarity=0.341 Sum_probs=100.3
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc---cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEe
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV---KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~ 109 (150)
..+++|||+++...++.+++.|.. .++.+..+||+|+++++.+++..|.+|..+|+|||+.++.|+|+|++++||++
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~ 290 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDS 290 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEEC
Confidence 467899999999999999999986 57889999999999999999999999999999999999999999999999998
Q ss_pred cCCC------------------ChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 110 DLAR------------------DIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 110 ~~~~------------------~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+.++ |.++|.||+||+||. .+|.||.++++.+.
T Consensus 291 Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 291 GLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred CCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 8765 446899999999999 58999999987644
No 67
>KOG0354|consensus
Probab=99.82 E-value=2.1e-19 Score=140.60 Aligned_cols=107 Identities=30% Similarity=0.381 Sum_probs=94.7
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccc---cCceEEEecC--------CCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCc
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTV---KEYDVLLLHG--------DMDQSERNSVITKFKRQECRILVATDVAARGLDI 100 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~---~~~~~~~~~~--------~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 100 (150)
.+..++||||.+++.++.|..+|.. .++++..+-| +|++.++++++++|++|+++|||||+++++|+|+
T Consensus 411 ~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI 490 (746)
T KOG0354|consen 411 NPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDI 490 (746)
T ss_pred CCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCc
Confidence 6788999999999999999999872 2445444444 6999999999999999999999999999999999
Q ss_pred cCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEec
Q psy17637 101 PHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140 (150)
Q Consensus 101 ~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~ 140 (150)
+.|+.||.||...++-..+||+|| ||.. .|.++++++.
T Consensus 491 ~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll~t~ 528 (746)
T KOG0354|consen 491 GECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLLTTG 528 (746)
T ss_pred ccccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEEEcc
Confidence 999999999999999999999999 9984 6788888773
No 68
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.82 E-value=1.1e-19 Score=107.67 Aligned_cols=81 Identities=46% Similarity=0.711 Sum_probs=76.2
Q ss_pred HHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCC
Q psy17637 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128 (150)
Q Consensus 49 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~ 128 (150)
.+++.|...++.+..+||++++++|..+++.|+++...+|++|+++++|+|+|.+++||++++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 45667777789999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy17637 129 G 129 (150)
Q Consensus 129 g 129 (150)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 69
>PRK00254 ski2-like helicase; Provisional
Probab=99.81 E-value=8.6e-20 Score=146.43 Aligned_cols=110 Identities=22% Similarity=0.352 Sum_probs=92.0
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc---------------------------------CceEEEecCCCCHHHHHHHHHH
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK---------------------------------EYDVLLLHGDMDQSERNSVITK 79 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~---------------------------------~~~~~~~~~~~~~~~r~~~~~~ 79 (150)
...++||||+|++.++.++..|... ...+.++||+|++++|..+++.
T Consensus 237 ~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~ 316 (720)
T PRK00254 237 KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDA 316 (720)
T ss_pred hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHH
Confidence 4678999999999998777655311 1248999999999999999999
Q ss_pred hhcCCceEEEEcCCCcccCCccCCcEEEE-------ecCCC-ChhHHHHhhccccCCC--CccEEEEEEecCC
Q psy17637 80 FKRQECRILVATDVAARGLDIPHIRTVVN-------YDLAR-DIDTHTHRIGRTGRAG--NKGVAYTLVTDKD 142 (150)
Q Consensus 80 f~~g~~~vlv~T~~~~~Gidi~~~~~vi~-------~~~~~-~~~~~~q~~GR~~R~g--~~~~~~~~~~~~~ 142 (150)
|++|.++|||||+.+++|+|+|...+||. ++.|. +..+|.||+|||||.| ..|.++++++..+
T Consensus 317 F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 317 FREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999999999999999999999984 44443 5779999999999976 4578888887644
No 70
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.81 E-value=3e-19 Score=142.04 Aligned_cols=119 Identities=24% Similarity=0.314 Sum_probs=104.5
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccC-ceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCc
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKE-YDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDI 100 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 100 (150)
.++..+.+.-+....++||+||+..+|.++..|+..+ ..+..+||.++.+.|..+.++|++|+++++|||+.++.|||+
T Consensus 241 ~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 241 ALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 3444444444456699999999999999999998876 789999999999999999999999999999999999999999
Q ss_pred cCCcEEEEecCCCChhHHHHhhccccC-CCCccEEEEEEec
Q psy17637 101 PHIRTVVNYDLARDIDTHTHRIGRTGR-AGNKGVAYTLVTD 140 (150)
Q Consensus 101 ~~~~~vi~~~~~~~~~~~~q~~GR~~R-~g~~~~~~~~~~~ 140 (150)
.+++.||+++.|.+.+.++||+||+|+ .+..+..+++..+
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999996 4455677777665
No 71
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=3.3e-19 Score=140.97 Aligned_cols=110 Identities=17% Similarity=0.277 Sum_probs=97.0
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC-CceEEEEcCCCcccCCccCCcEEEEecC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ-ECRILVATDVAARGLDIPHIRTVVNYDL 111 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidi~~~~~vi~~~~ 111 (150)
.+.++||||.+.+.++.++..|. +..+||.+++.+|.++++.|+.| .+++||+|+++.+|+|+|++++||++++
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~ 569 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISS 569 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCC
Confidence 67899999999999999999884 35689999999999999999875 7799999999999999999999999998
Q ss_pred C-CChhHHHHhhccccCCCCcc-------EEEEEEecCCCcccc
Q psy17637 112 A-RDIDTHTHRIGRTGRAGNKG-------VAYTLVTDKDKDGEL 147 (150)
Q Consensus 112 ~-~~~~~~~q~~GR~~R~g~~~-------~~~~~~~~~~~~~~~ 147 (150)
| .|...|+||+||++|.+..+ ..|.|++.++.+++.
T Consensus 570 ~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~ 613 (732)
T TIGR00603 570 HYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYY 613 (732)
T ss_pred CCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHH
Confidence 7 59999999999999987543 448888887766554
No 72
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.81 E-value=5.7e-19 Score=141.09 Aligned_cols=102 Identities=20% Similarity=0.289 Sum_probs=87.5
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHH-----HHHHHhhc----CC-------ceEEEEcCCCcc
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERN-----SVITKFKR----QE-------CRILVATDVAAR 96 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~----g~-------~~vlv~T~~~~~ 96 (150)
...++||||||++.++.+++.|...++ ..+||.|++.+|. ++++.|+. |. ..|||||+++++
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaer 348 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEV 348 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhh
Confidence 567899999999999999999988776 8999999999999 78899987 43 579999999999
Q ss_pred cCCccCCcEEEEecCCCChhHHHHhhccccCCCCcc-EEEEEEe
Q psy17637 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG-VAYTLVT 139 (150)
Q Consensus 97 Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~-~~~~~~~ 139 (150)
|+|++. ++||++..| .++|+||+||+||.|+.+ ..+.++.
T Consensus 349 GLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 349 GVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred cccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 999986 888887666 699999999999999753 3344443
No 73
>PRK01172 ski2-like helicase; Provisional
Probab=99.81 E-value=1.9e-19 Score=143.67 Aligned_cols=110 Identities=24% Similarity=0.366 Sum_probs=90.6
Q ss_pred CCCCCeeEEehhhhhHHHHHhhcccc-------------------------CceEEEecCCCCHHHHHHHHHHhhcCCce
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVK-------------------------EYDVLLLHGDMDQSERNSVITKFKRQECR 86 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~-------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 86 (150)
...+++||||++++.++.++..|... ...+.++||+|++++|..+++.|++|.++
T Consensus 234 ~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~ 313 (674)
T PRK01172 234 NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIK 313 (674)
T ss_pred hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCe
Confidence 45679999999999999998877532 12478899999999999999999999999
Q ss_pred EEEEcCCCcccCCccCCcEEEEecC---------CCChhHHHHhhccccCCCC--ccEEEEEEecCC
Q psy17637 87 ILVATDVAARGLDIPHIRTVVNYDL---------ARDIDTHTHRIGRTGRAGN--KGVAYTLVTDKD 142 (150)
Q Consensus 87 vlv~T~~~~~Gidi~~~~~vi~~~~---------~~~~~~~~q~~GR~~R~g~--~~~~~~~~~~~~ 142 (150)
|||||+.+++|+|+|...+|| .+. |.+..+|.||+|||||.|. .|.+++++...+
T Consensus 314 VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 314 VIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred EEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 999999999999999865444 333 4588899999999999984 456777765443
No 74
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=3.5e-19 Score=142.87 Aligned_cols=125 Identities=25% Similarity=0.307 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCccc
Q psy17637 18 EFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97 (150)
Q Consensus 18 ~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 97 (150)
.+...|++.+......+.|+||||+|++.++.|+..|...+++...+|+ .+.+|+..+..|..+...|+|||+++++|
T Consensus 582 eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRG 659 (1025)
T PRK12900 582 EKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRG 659 (1025)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCC
Confidence 4556788888766568899999999999999999999999999999997 48899999999999999999999999999
Q ss_pred CCcc---CCc-----EEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCc
Q psy17637 98 LDIP---HIR-----TVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144 (150)
Q Consensus 98 idi~---~~~-----~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 144 (150)
+||+ .+. +||....|.+...|.|++||+||.|.+|.+.+|++.+|..
T Consensus 660 tDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 660 TDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 9998 443 4589999999999999999999999999999999987654
No 75
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.80 E-value=2.9e-19 Score=135.83 Aligned_cols=109 Identities=26% Similarity=0.379 Sum_probs=96.8
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEE---ec
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN---YD 110 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~---~~ 110 (150)
.+++|||++|+..|.+++..|..+|+++.+||+||+..+|+.+...|.++++.++|+|-+++.|+|+|.-.+|+- .+
T Consensus 440 rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG 519 (830)
T COG1202 440 RGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMG 519 (830)
T ss_pred CCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcc
Confidence 478999999999999999999999999999999999999999999999999999999999999999997654431 23
Q ss_pred CCC-ChhHHHHhhccccCCC--CccEEEEEEecCC
Q psy17637 111 LAR-DIDTHTHRIGRTGRAG--NKGVAYTLVTDKD 142 (150)
Q Consensus 111 ~~~-~~~~~~q~~GR~~R~g--~~~~~~~~~~~~~ 142 (150)
..| ++.+|.||.|||||++ +.|.+|+++.+..
T Consensus 520 ~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 520 IEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred cccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 333 7999999999999988 5688999987653
No 76
>KOG0353|consensus
Probab=99.79 E-value=6.3e-19 Score=128.83 Aligned_cols=137 Identities=17% Similarity=0.282 Sum_probs=120.5
Q ss_pred CcCeeEEEeec--chhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhh
Q psy17637 4 NKGVAYTLVTD--KDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81 (150)
Q Consensus 4 ~~~~~~~~~~~--~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 81 (150)
++++.|.+... .+.+..+.+...+... ..+...||||-+++.+|.++..|+..|+.+..+|+.|.|+++.-+-+.|.
T Consensus 286 r~nl~yev~qkp~n~dd~~edi~k~i~~~-f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~ 364 (695)
T KOG0353|consen 286 RPNLKYEVRQKPGNEDDCIEDIAKLIKGD-FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWI 364 (695)
T ss_pred CCCceeEeeeCCCChHHHHHHHHHHhccc-cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccc
Confidence 45666665433 2445666776666655 78899999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHH-----------------------------------------
Q psy17637 82 RQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTH----------------------------------------- 120 (150)
Q Consensus 82 ~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q----------------------------------------- 120 (150)
.|+++|+|+|-++++|+|-|++.+||+.++|+|++.|.|
T Consensus 365 a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfs 444 (695)
T KOG0353|consen 365 AGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFS 444 (695)
T ss_pred ccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeec
Confidence 999999999999999999999999999999999999999
Q ss_pred --hhccccCCCCccEEEEEEecC
Q psy17637 121 --RIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 121 --~~GR~~R~g~~~~~~~~~~~~ 141 (150)
..||+||.+.+..|++++.-.
T Consensus 445 ekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 445 EKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred chhccccccCCCcccEEEEechH
Confidence 789999999999999887543
No 77
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.76 E-value=2.4e-18 Score=142.26 Aligned_cols=109 Identities=25% Similarity=0.380 Sum_probs=95.5
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce---EEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEE
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD---VLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~ 108 (150)
...+.+|||+++...++.+++.|...++. +.++||++++++|.++++. .|..+|+|||++++.|+++|++++||+
T Consensus 284 ~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 284 EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEE
Confidence 35678999999999999999999876654 7799999999999999876 467899999999999999999999999
Q ss_pred ecC---------------C---CChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 109 YDL---------------A---RDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 109 ~~~---------------~---~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
++. | .|.++|.||+||+||. .+|.||.++++.+.
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 863 3 4668999999999999 58999999997653
No 78
>KOG0337|consensus
Probab=99.74 E-value=2.3e-18 Score=126.62 Aligned_cols=131 Identities=33% Similarity=0.441 Sum_probs=115.7
Q ss_pred ecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 13 ~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
..+..++...|+..+.+. -...+++||+.|..+++.+.+.|...|+....+++.|++..|..-+..|..+...+||.|+
T Consensus 241 ~~~~a~K~aaLl~il~~~-~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTd 319 (529)
T KOG0337|consen 241 RVRKAEKEAALLSILGGR-IKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTD 319 (529)
T ss_pred eeccHHHHHHHHHHHhcc-ccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEeh
Confidence 333344444566555554 2356899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCc
Q psy17637 93 VAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144 (150)
Q Consensus 93 ~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 144 (150)
.+.+|+|+|-.+.||+||+|.+...|++|+||+.|.|+.+..|.++...+.-
T Consensus 320 vaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~ 371 (529)
T KOG0337|consen 320 VAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDP 371 (529)
T ss_pred hhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccch
Confidence 9999999999999999999999999999999999999999999999887653
No 79
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.74 E-value=2.5e-17 Score=127.63 Aligned_cols=137 Identities=25% Similarity=0.328 Sum_probs=113.1
Q ss_pred CCcCeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhh--------HHHHHhhcccc--CceEEEecCCCCHHH
Q psy17637 3 GNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLN--------AEELANSLTVK--EYDVLLLHGDMDQSE 72 (150)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~--------~~~l~~~L~~~--~~~~~~~~~~~~~~~ 72 (150)
|++.+.-......... .+++.+.+...++.++.+.|+-.++ ++++++.|... +.++..+||.|++++
T Consensus 445 GRkpI~T~~i~~~~~~---~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~e 521 (677)
T COG1200 445 GRKPITTVVIPHERRP---EVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAE 521 (677)
T ss_pred CCCceEEEEeccccHH---HHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHH
Confidence 5566666665554433 5666776666678899999987665 44566666532 566999999999999
Q ss_pred HHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCC-CChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 73 RNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLA-RDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 73 r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~-~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
+..+++.|++|+++|||||.+++-|+|+|+++++|..+.- ...++..|..||+||-+..++|++++....
T Consensus 522 Kd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 522 KDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred HHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999999999999999999999999999888776 489999999999999999999999998776
No 80
>KOG0349|consensus
Probab=99.73 E-value=1.9e-17 Score=122.72 Aligned_cols=109 Identities=35% Similarity=0.571 Sum_probs=101.2
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc---CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEe
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK---EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~ 109 (150)
+..++||||.|+..|+.|.+.+..+ .+.++++||+..+.+|+..++.|+.+..+.||||++..+|+|+..+.++|+.
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~inv 583 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINV 583 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEE
Confidence 6789999999999999999999765 4679999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHhhccccCCCCccEEEEEEecC
Q psy17637 110 DLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 110 ~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
-+|.....|++|+||+||..+-|.++.++...
T Consensus 584 tlpd~k~nyvhrigrvgraermglaislvat~ 615 (725)
T KOG0349|consen 584 TLPDDKTNYVHRIGRVGRAERMGLAISLVATV 615 (725)
T ss_pred ecCcccchhhhhhhccchhhhcceeEEEeecc
Confidence 99999999999999999998778888887543
No 81
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.73 E-value=1.6e-17 Score=137.67 Aligned_cols=108 Identities=25% Similarity=0.362 Sum_probs=94.1
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccC---ceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEe
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKE---YDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~ 109 (150)
..+.+|||+++..+++.+++.|...+ ..+.++||.|+++++.++++.+ +..+|+|||++++.|+++|++.+||++
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDs 355 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDT 355 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeC
Confidence 45789999999999999999997653 4688999999999999986654 235899999999999999999999998
Q ss_pred cCC------------------CChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 110 DLA------------------RDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 110 ~~~------------------~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+.+ .|.++|.||.||+||.+ +|.||.++++.+.
T Consensus 356 Gl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 356 GTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred CCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 854 36789999999999998 8999999987643
No 82
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.73 E-value=6.9e-17 Score=132.04 Aligned_cols=114 Identities=18% Similarity=0.296 Sum_probs=101.8
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC---CceEEEEcCCCcccCCccCCcEEEE
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ---ECRILVATDVAARGLDIPHIRTVVN 108 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vlv~T~~~~~Gidi~~~~~vi~ 108 (150)
..+.++|||+.....++.|...|...++.+..++|+++..+|..+++.|+.. ...+|++|.+++.|+|+..+++||+
T Consensus 485 ~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi 564 (1033)
T PLN03142 485 ERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL 564 (1033)
T ss_pred hcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE
Confidence 4678999999999999999999998999999999999999999999999753 2357899999999999999999999
Q ss_pred ecCCCChhHHHHhhccccCCCCcc--EEEEEEecCCCcc
Q psy17637 109 YDLARDIDTHTHRIGRTGRAGNKG--VAYTLVTDKDKDG 145 (150)
Q Consensus 109 ~~~~~~~~~~~q~~GR~~R~g~~~--~~~~~~~~~~~~~ 145 (150)
||++|++....|++||+.|.|+.. .+|.|++....++
T Consensus 565 yD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEE 603 (1033)
T PLN03142 565 YDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 603 (1033)
T ss_pred eCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHH
Confidence 999999999999999999999875 4667777765544
No 83
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.70 E-value=2e-16 Score=117.93 Aligned_cols=85 Identities=21% Similarity=0.290 Sum_probs=73.9
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccC--ceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEec
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKE--YDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYD 110 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~ 110 (150)
+..++||||+|.+.++.++..|...+ ..+..+||.+++.+|.+. ++..|||||+++++|+|++.. +|| ++
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~ 342 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS 342 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC
Confidence 56789999999999999999998754 578889999999988754 367899999999999999976 555 45
Q ss_pred CCCChhHHHHhhcccc
Q psy17637 111 LARDIDTHTHRIGRTG 126 (150)
Q Consensus 111 ~~~~~~~~~q~~GR~~ 126 (150)
|.+.++|+||+||+|
T Consensus 343 -p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 343 -ARDAAAFWQRLGRLG 357 (357)
T ss_pred -CCCHHHHhhhcccCC
Confidence 889999999999986
No 84
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=4e-16 Score=125.06 Aligned_cols=125 Identities=17% Similarity=0.230 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCccc
Q psy17637 18 EFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97 (150)
Q Consensus 18 ~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 97 (150)
.+...+++.+......+.|+||||+|++.++.++..|...+++...+|+.+.+.++..+.+.|+.| .|+|||+++++|
T Consensus 428 ~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRG 505 (896)
T PRK13104 428 DKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRG 505 (896)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCC
Confidence 345578888877777999999999999999999999999999999999999999999999999999 499999999999
Q ss_pred CCcc-C-------------------------------------CcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEe
Q psy17637 98 LDIP-H-------------------------------------IRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139 (150)
Q Consensus 98 idi~-~-------------------------------------~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~ 139 (150)
+|+. + ==+||-...+.|...-.|..||+||.|++|.+-+|++
T Consensus 506 tDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lS 585 (896)
T PRK13104 506 TDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLS 585 (896)
T ss_pred cceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEE
Confidence 9984 1 1178888889999999999999999999999999999
Q ss_pred cCCCc
Q psy17637 140 DKDKD 144 (150)
Q Consensus 140 ~~~~~ 144 (150)
-+|..
T Consensus 586 leD~l 590 (896)
T PRK13104 586 LEDNL 590 (896)
T ss_pred cCcHH
Confidence 87653
No 85
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=4.8e-16 Score=124.23 Aligned_cols=124 Identities=20% Similarity=0.240 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccC
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGL 98 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 98 (150)
+...+++.+......+.|+||||+|++.++.++..|...++++..+|+. +.+|+..+..|+.+...|+|||+++++|+
T Consensus 415 K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGt 492 (830)
T PRK12904 415 KFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGT 492 (830)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCc
Confidence 4557788886654678899999999999999999999999999999996 88999999999999999999999999999
Q ss_pred CccCC--------------------------------------cEEEEecCCCChhHHHHhhccccCCCCccEEEEEEec
Q psy17637 99 DIPHI--------------------------------------RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140 (150)
Q Consensus 99 di~~~--------------------------------------~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~ 140 (150)
|++-- =+||-...|.|...-.|..||+||+|++|.+-+|++-
T Consensus 493 DI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSl 572 (830)
T PRK12904 493 DIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSL 572 (830)
T ss_pred CccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEc
Confidence 98632 2788888999999999999999999999999999998
Q ss_pred CCCc
Q psy17637 141 KDKD 144 (150)
Q Consensus 141 ~~~~ 144 (150)
+|..
T Consensus 573 eD~l 576 (830)
T PRK12904 573 EDDL 576 (830)
T ss_pred CcHH
Confidence 7653
No 86
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.69 E-value=8.6e-16 Score=124.90 Aligned_cols=133 Identities=23% Similarity=0.293 Sum_probs=110.6
Q ss_pred CeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcccc--CceEEEecCCCCHHHHHHHHHHhhcC
Q psy17637 6 GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK--EYDVLLLHGDMDQSERNSVITKFKRQ 83 (150)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g 83 (150)
.+.-++.+..+.-.-+.|+.++ ..++++-...|..+..+.+++.|... ..++.+.||.|+..+-++++..|.+|
T Consensus 779 pV~T~V~~~d~~~ireAI~REl----~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g 854 (1139)
T COG1197 779 PVKTFVSEYDDLLIREAILREL----LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNG 854 (1139)
T ss_pred ceEEEEecCChHHHHHHHHHHH----hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcC
Confidence 3444445555554444555555 45688888889999999998888764 55789999999999999999999999
Q ss_pred CceEEEEcCCCcccCCccCCcEEEEecCCC-ChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 84 ECRILVATDVAARGLDIPHIRTVVNYDLAR-DIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 84 ~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~-~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
+.+|||||..++.|+|+|++|.+|..+... ..+++.|..||+||..+.+++|+++....
T Consensus 855 ~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 855 EYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred CCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 999999999999999999999988776654 89999999999999999999999998653
No 87
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.68 E-value=2.1e-15 Score=115.20 Aligned_cols=95 Identities=21% Similarity=0.322 Sum_probs=91.3
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLA 112 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~ 112 (150)
...+++|||.+.+++++++..+...+. +..+++..+..+|..+++.|+.|.+.+||++.++.+|+|+|+++++|...++
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t 360 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPT 360 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCC
Confidence 567999999999999999999998888 8899999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhhccccCC
Q psy17637 113 RDIDTHTHRIGRTGRA 128 (150)
Q Consensus 113 ~~~~~~~q~~GR~~R~ 128 (150)
.|...|.||+||..|.
T Consensus 361 ~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 361 GSRRLFIQRLGRGLRP 376 (442)
T ss_pred CcHHHHHHHhhhhccC
Confidence 9999999999999994
No 88
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=6.9e-16 Score=123.56 Aligned_cols=125 Identities=18% Similarity=0.249 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCccc
Q psy17637 18 EFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97 (150)
Q Consensus 18 ~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 97 (150)
++...+++.+......+.|+||||+|.+.++.++..|...+++...+|+.+++.++..+.+.|+.|. |+|||+++++|
T Consensus 433 ~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRG 510 (908)
T PRK13107 433 EKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRG 510 (908)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCC
Confidence 3445788888877788999999999999999999999999999999999999999999999999997 99999999999
Q ss_pred CCccC-------------------------------------CcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEec
Q psy17637 98 LDIPH-------------------------------------IRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140 (150)
Q Consensus 98 idi~~-------------------------------------~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~ 140 (150)
+|+.= ==+||-...+.|...-.|..||+||.|++|.+-+|++-
T Consensus 511 TDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSl 590 (908)
T PRK13107 511 TDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSM 590 (908)
T ss_pred cceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEe
Confidence 99851 12788888999999999999999999999999999998
Q ss_pred CCCc
Q psy17637 141 KDKD 144 (150)
Q Consensus 141 ~~~~ 144 (150)
+|..
T Consensus 591 ED~L 594 (908)
T PRK13107 591 EDSL 594 (908)
T ss_pred CcHH
Confidence 7653
No 89
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.66 E-value=7.7e-16 Score=116.45 Aligned_cols=122 Identities=23% Similarity=0.320 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccC
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGL 98 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 98 (150)
.+..|+..+........+++|-+-|++.+|.|.++|.+.|+++.++|++...-+|.++++..+.|.+.|||+.+.+.+|+
T Consensus 431 QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGL 510 (663)
T COG0556 431 QVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (663)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccC
Confidence 46688899988767889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCcEEEEecCCC-----ChhHHHHhhccccCCCCccEEEEEEecC
Q psy17637 99 DIPHIRTVVNYDLAR-----DIDTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 99 di~~~~~vi~~~~~~-----~~~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
|+|.+++|..+|..+ |..+++|-+|||.|.- .|.++.+.+.-
T Consensus 511 DiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~-~GkvIlYAD~i 557 (663)
T COG0556 511 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKVILYADKI 557 (663)
T ss_pred CCcceeEEEEeecCccccccccchHHHHHHHHhhcc-CCeEEEEchhh
Confidence 999999999887765 8999999999999985 68888887654
No 90
>PRK09694 helicase Cas3; Provisional
Probab=99.64 E-value=1.6e-15 Score=122.92 Aligned_cols=106 Identities=25% Similarity=0.348 Sum_probs=88.3
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccC---ceEEEecCCCCHHHH----HHHHHHh-hcCC---ceEEEE
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKE---YDVLLLHGDMDQSER----NSVITKF-KRQE---CRILVA 90 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r----~~~~~~f-~~g~---~~vlv~ 90 (150)
.+++.+.+....+.+++|||||++.++++++.|+..+ ..+..+|+.+++.+| +++++.| ++|+ ..|||+
T Consensus 548 ~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVa 627 (878)
T PRK09694 548 TLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVA 627 (878)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEE
Confidence 4555555443567889999999999999999998654 579999999999999 4567788 6665 379999
Q ss_pred cCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCC
Q psy17637 91 TDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130 (150)
Q Consensus 91 T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~ 130 (150)
|++++.|+|+ +++++|....| .+.++||+||++|.+.
T Consensus 628 TQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 628 TQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred Ccchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999999999 57988887777 7899999999999875
No 91
>PRK14701 reverse gyrase; Provisional
Probab=99.64 E-value=1.8e-15 Score=128.61 Aligned_cols=120 Identities=19% Similarity=0.264 Sum_probs=95.4
Q ss_pred CeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhh---HHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc
Q psy17637 6 GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLN---AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82 (150)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 82 (150)
++...+.......+ ..++..+... +.++||||++++. ++++++.|...|+++..+||+ |...++.|++
T Consensus 306 ~i~~~yi~~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~ 376 (1638)
T PRK14701 306 NIVDVYLNPEKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEE 376 (1638)
T ss_pred CcEEEEEECCHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHc
Confidence 44444443332222 3555555443 4689999999875 589999999999999999995 8899999999
Q ss_pred CCceEEEEc----CCCcccCCccC-CcEEEEecCCC---ChhHHHHhh-------------ccccCCCCccEE
Q psy17637 83 QECRILVAT----DVAARGLDIPH-IRTVVNYDLAR---DIDTHTHRI-------------GRTGRAGNKGVA 134 (150)
Q Consensus 83 g~~~vlv~T----~~~~~Gidi~~-~~~vi~~~~~~---~~~~~~q~~-------------GR~~R~g~~~~~ 134 (150)
|+.+||||| +.+++|+|+|+ +.+|||+++|+ +++.|.|.. ||++|.|.+..+
T Consensus 377 G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~ 449 (1638)
T PRK14701 377 GEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEG 449 (1638)
T ss_pred CCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchh
Confidence 999999999 48899999998 99999999999 888777765 999999876444
No 92
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.63 E-value=3e-15 Score=120.00 Aligned_cols=122 Identities=24% Similarity=0.344 Sum_probs=97.4
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccc---------------------c----------------CceEEEe
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV---------------------K----------------EYDVLLL 64 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~---------------------~----------------~~~~~~~ 64 (150)
.++..+........+++|||++++.+...+.+|.. . ...++++
T Consensus 241 ~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafH 320 (766)
T COG1204 241 LALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFH 320 (766)
T ss_pred HHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccc
Confidence 45555555556788999999999998888887762 0 0126889
Q ss_pred cCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEE----Eec-----CCCChhHHHHhhccccCCCC--ccE
Q psy17637 65 HGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV----NYD-----LARDIDTHTHRIGRTGRAGN--KGV 133 (150)
Q Consensus 65 ~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi----~~~-----~~~~~~~~~q~~GR~~R~g~--~~~ 133 (150)
|++++.++|.-+.+.|+.|.++||+||+.+.+|+|+|.-..|| .|+ .+-+.-++.||.|||||+|- .|.
T Consensus 321 hAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~ 400 (766)
T COG1204 321 HAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGE 400 (766)
T ss_pred ccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCc
Confidence 9999999999999999999999999999999999999877776 466 44578899999999999994 355
Q ss_pred EEEEEecCCC
Q psy17637 134 AYTLVTDKDK 143 (150)
Q Consensus 134 ~~~~~~~~~~ 143 (150)
.+.+.+..+.
T Consensus 401 ~~i~~~~~~~ 410 (766)
T COG1204 401 AIILATSHDE 410 (766)
T ss_pred EEEEecCccc
Confidence 6666644433
No 93
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.59 E-value=2.4e-14 Score=103.48 Aligned_cols=115 Identities=21% Similarity=0.298 Sum_probs=94.8
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcccc--CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCC
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK--EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLD 99 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 99 (150)
.|...+....+.+.|++||+++.+..+.+++.|+.. ...++.+|+. ...|.+.+++|++|++.+|++|..+++|+.
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVT 370 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVT 370 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccc
Confidence 677788877778899999999999999999999543 3456788887 557889999999999999999999999999
Q ss_pred ccCCcEEEEecCC--CChhHHHHhhccccCCCC--ccEEEEEE
Q psy17637 100 IPHIRTVVNYDLA--RDIDTHTHRIGRTGRAGN--KGVAYTLV 138 (150)
Q Consensus 100 i~~~~~vi~~~~~--~~~~~~~q~~GR~~R~g~--~~~~~~~~ 138 (150)
+|++++.+.-.-. .+.+.++|..||+||.-+ .|.++.|-
T Consensus 371 fp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 371 FPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred cccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 9999987653333 689999999999999653 34455444
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=9e-15 Score=113.18 Aligned_cols=95 Identities=20% Similarity=0.339 Sum_probs=75.9
Q ss_pred HHHHHhhcccc--CceEEEecCCCCHHHH--HHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCCC---------
Q psy17637 47 AEELANSLTVK--EYDVLLLHGDMDQSER--NSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLAR--------- 113 (150)
Q Consensus 47 ~~~l~~~L~~~--~~~~~~~~~~~~~~~r--~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~--------- 113 (150)
.+.+.+.|... +.++..+|++++...+ +++++.|++|+.+|||+|++++.|+|+|++++|+.++...
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 35666666544 6789999999887666 8999999999999999999999999999999886444432
Q ss_pred ---ChhHHHHhhccccCCCCccEEEEEEecC
Q psy17637 114 ---DIDTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 114 ---~~~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
....|.|++||+||.+..|.++......
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~p 381 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYNP 381 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCCC
Confidence 2467899999999998888887655443
No 95
>PRK09401 reverse gyrase; Reviewed
Probab=99.59 E-value=8e-15 Score=122.14 Aligned_cols=98 Identities=24% Similarity=0.288 Sum_probs=83.7
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhh---HHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEE----cCCC
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLN---AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVA----TDVA 94 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~----T~~~ 94 (150)
.+...+... +.++||||++++. ++.+++.|...|+++..+||+| .+.+++|++|+++|||| |+.+
T Consensus 319 ~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~ 390 (1176)
T PRK09401 319 KLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVL 390 (1176)
T ss_pred HHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCce
Confidence 444444433 3589999999777 9999999999999999999999 23459999999999999 6899
Q ss_pred cccCCccC-CcEEEEecCCC------ChhHHHHhhccccC
Q psy17637 95 ARGLDIPH-IRTVVNYDLAR------DIDTHTHRIGRTGR 127 (150)
Q Consensus 95 ~~Gidi~~-~~~vi~~~~~~------~~~~~~q~~GR~~R 127 (150)
++|+|+|+ +++||||++|+ ....+.+++||+..
T Consensus 391 aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 391 VRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred eecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 99999999 89999999998 66788999999853
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.57 E-value=3.5e-14 Score=117.85 Aligned_cols=95 Identities=23% Similarity=0.350 Sum_probs=82.1
Q ss_pred CCCeeEEehhhhhHHHHHhhcccc------C---ceEEEecCCCCHHHHHHHHHHhhcCCc-eEEEEcCCCcccCCccCC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVK------E---YDVLLLHGDMDQSERNSVITKFKRQEC-RILVATDVAARGLDIPHI 103 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~------~---~~~~~~~~~~~~~~r~~~~~~f~~g~~-~vlv~T~~~~~Gidi~~~ 103 (150)
..++||||.++++++.+++.|... + ..+..+||.++ ++.++++.|+++.. .|+|+++++.+|+|+|.+
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 479999999999999888876542 2 23566888875 56789999999887 589999999999999999
Q ss_pred cEEEEecCCCChhHHHHhhccccCCCC
Q psy17637 104 RTVVNYDLARDIDTHTHRIGRTGRAGN 130 (150)
Q Consensus 104 ~~vi~~~~~~~~~~~~q~~GR~~R~g~ 130 (150)
.+||++.++.|...|.||+||+.|...
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 999999999999999999999999754
No 97
>KOG0947|consensus
Probab=99.56 E-value=2.9e-14 Score=113.73 Aligned_cols=119 Identities=24% Similarity=0.322 Sum_probs=96.9
Q ss_pred HHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCce---------------------------------------
Q psy17637 20 AGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYD--------------------------------------- 60 (150)
Q Consensus 20 ~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~--------------------------------------- 60 (150)
...++..+... .--|+||||.+++.|++-+++|...++.
T Consensus 555 ~l~lin~L~k~--~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RG 632 (1248)
T KOG0947|consen 555 WLDLINHLRKK--NLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRG 632 (1248)
T ss_pred HHHHHHHHhhc--ccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhc
Confidence 34666777665 6789999999999999999998642221
Q ss_pred EEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCCC---------ChhHHHHhhccccCCCC-
Q psy17637 61 VLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLAR---------DIDTHTHRIGRTGRAGN- 130 (150)
Q Consensus 61 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~---------~~~~~~q~~GR~~R~g~- 130 (150)
++.+|||+-|-.++-+...|+.|-++||+||..+++|+|.|.-.+|+ .+..+ .+.+|.||.|||||.|=
T Consensus 633 iaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD 711 (1248)
T KOG0947|consen 633 IAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLD 711 (1248)
T ss_pred chhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEe-eehhhccCcceeecCChhHHhhhccccccccC
Confidence 78899999999999999999999999999999999999998765555 33332 79999999999999993
Q ss_pred -ccEEEEEEecC
Q psy17637 131 -KGVAYTLVTDK 141 (150)
Q Consensus 131 -~~~~~~~~~~~ 141 (150)
.|.++++....
T Consensus 712 ~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 712 ETGTVIIMCKDS 723 (1248)
T ss_pred cCceEEEEecCC
Confidence 46676666554
No 98
>KOG0948|consensus
Probab=99.54 E-value=1.1e-14 Score=113.84 Aligned_cols=121 Identities=17% Similarity=0.311 Sum_probs=98.2
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCce---------------------------------------EE
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYD---------------------------------------VL 62 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~---------------------------------------~~ 62 (150)
.++..+... +..|+|||+.+++.||.++-.+....+. +.
T Consensus 373 kiVkmi~~~--~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIG 450 (1041)
T KOG0948|consen 373 KIVKMIMER--NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIG 450 (1041)
T ss_pred HHHHHHHhh--cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccc
Confidence 556666554 7789999999999999988777542211 67
Q ss_pred EecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCCC---------ChhHHHHhhccccCCC--Cc
Q psy17637 63 LLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLAR---------DIDTHTHRIGRTGRAG--NK 131 (150)
Q Consensus 63 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~---------~~~~~~q~~GR~~R~g--~~ 131 (150)
.+|+|+-|--++.+.-.|++|-+++|.||..++.|+|.|.-++|+- ..-+ +..+|+||.|||||.| ..
T Consensus 451 IHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT-~~rKfDG~~fRwissGEYIQMSGRAGRRG~Ddr 529 (1041)
T KOG0948|consen 451 IHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT-AVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDR 529 (1041)
T ss_pred cccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe-eccccCCcceeeecccceEEecccccccCCCCC
Confidence 8999999999999999999999999999999999999998665553 3322 7899999999999999 45
Q ss_pred cEEEEEEecCCCcc
Q psy17637 132 GVAYTLVTDKDKDG 145 (150)
Q Consensus 132 ~~~~~~~~~~~~~~ 145 (150)
|.+++++++.-...
T Consensus 530 GivIlmiDekm~~~ 543 (1041)
T KOG0948|consen 530 GIVILMIDEKMEPQ 543 (1041)
T ss_pred ceEEEEecCcCCHH
Confidence 88888888765543
No 99
>KOG0384|consensus
Probab=99.50 E-value=1.5e-13 Score=111.83 Aligned_cols=113 Identities=22% Similarity=0.320 Sum_probs=104.1
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc---CCceEEEEcCCCcccCCccCCcEEEE
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR---QECRILVATDVAARGLDIPHIRTVVN 108 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~vlv~T~~~~~Gidi~~~~~vi~ 108 (150)
..+.++|||+.....++-|+++|..++++.-.+.|.+..+.|+..+..|.. ..+..|++|.+.+-|||+-.++.||.
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII 776 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII 776 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE
Confidence 357899999999999999999999999999999999999999999999985 34679999999999999999999999
Q ss_pred ecCCCChhHHHHhhccccCCCCcc--EEEEEEecCCCc
Q psy17637 109 YDLARDIDTHTHRIGRTGRAGNKG--VAYTLVTDKDKD 144 (150)
Q Consensus 109 ~~~~~~~~~~~q~~GR~~R~g~~~--~~~~~~~~~~~~ 144 (150)
||..|+|..-+|+..||.|.|+.. .+|.|++...-.
T Consensus 777 FDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvE 814 (1373)
T KOG0384|consen 777 FDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVE 814 (1373)
T ss_pred eCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchH
Confidence 999999999999999999999876 468899887544
No 100
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.50 E-value=2.3e-13 Score=110.57 Aligned_cols=115 Identities=21% Similarity=0.311 Sum_probs=99.8
Q ss_pred CCCCeeEEehhhhhHHHHH----hhccccC----ceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCc
Q psy17637 33 EVPPALMNLAMQLNAEELA----NSLTVKE----YDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIR 104 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~----~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~ 104 (150)
...++|+|+.+++.++.++ ..+...+ ..+..++++|++++|.++...|+.|++.++++|.+++-|+|+..++
T Consensus 305 ~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ld 384 (851)
T COG1205 305 NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLD 384 (851)
T ss_pred cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhh
Confidence 5779999999999999886 3333334 5688999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC-ChhHHHHhhccccCCCCccEEEEEEecCCCcccc
Q psy17637 105 TVVNYDLAR-DIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGEL 147 (150)
Q Consensus 105 ~vi~~~~~~-~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~ 147 (150)
.||..+.|. +..++.|+.||+||.++.+..+.+...+--+.++
T Consensus 385 avi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy 428 (851)
T COG1205 385 AVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYY 428 (851)
T ss_pred hHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhh
Confidence 999999999 8999999999999999777777777644444443
No 101
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.50 E-value=2.4e-13 Score=113.52 Aligned_cols=85 Identities=21% Similarity=0.339 Sum_probs=74.8
Q ss_pred HHHHHHHhccCCCCCeeEEehhh---hhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEc----CCC
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQ---LNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT----DVA 94 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~---~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T----~~~ 94 (150)
.+++.+... ..++||||+++ +.++++++.|...|+++..+||+++ ++.++.|++|+++||||| +.+
T Consensus 317 ~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G~~~vLVata~~tdv~ 389 (1171)
T TIGR01054 317 TLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEGEIDVLIGVASYYGTL 389 (1171)
T ss_pred HHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcCCCCEEEEeccccCcc
Confidence 444444433 35899999999 9999999999999999999999997 378999999999999994 899
Q ss_pred cccCCccC-CcEEEEecCCC
Q psy17637 95 ARGLDIPH-IRTVVNYDLAR 113 (150)
Q Consensus 95 ~~Gidi~~-~~~vi~~~~~~ 113 (150)
++|+|+|+ +++||||++|+
T Consensus 390 aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 390 VRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred cccCCCCccccEEEEECCCC
Confidence 99999999 89999999997
No 102
>KOG4150|consensus
Probab=99.49 E-value=1.1e-13 Score=105.91 Aligned_cols=115 Identities=15% Similarity=0.130 Sum_probs=96.6
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc----cC----ceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCc
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV----KE----YDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIR 104 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~----~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~ 104 (150)
..-++|.||.+++.||.+....++ -+ -.+..+.||...++|.++...+-.|.+.-+|+|++++.|+|+..++
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LD 603 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLD 603 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccce
Confidence 467999999999999876554332 11 1245678999999999999999999999999999999999999999
Q ss_pred EEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCcccc
Q psy17637 105 TVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGEL 147 (150)
Q Consensus 105 ~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~~ 147 (150)
.|++.++|.|++.+.|..||+||..+++..+.++...--++++
T Consensus 604 AVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y 646 (1034)
T KOG4150|consen 604 AVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYY 646 (1034)
T ss_pred eEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHh
Confidence 9999999999999999999999998888777777655444443
No 103
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.49 E-value=3.5e-13 Score=107.69 Aligned_cols=96 Identities=26% Similarity=0.375 Sum_probs=77.2
Q ss_pred HHHHHhhcccc--CceEEEecCCCC--HHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCC--CC------
Q psy17637 47 AEELANSLTVK--EYDVLLLHGDMD--QSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLA--RD------ 114 (150)
Q Consensus 47 ~~~l~~~L~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~--~~------ 114 (150)
++.+.+.|... +.++..+|++++ .++++++++.|++|+..|||+|++++.|+|+|++++|+.++.+ .+
T Consensus 439 ~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra 518 (679)
T PRK05580 439 TERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRA 518 (679)
T ss_pred HHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccch
Confidence 45566666543 677899999986 4678999999999999999999999999999999998655443 22
Q ss_pred ----hhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 115 ----IDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 115 ----~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
...|.|++||+||.+..|.++......+
T Consensus 519 ~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 519 SERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred HHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 3568999999999888888887665543
No 104
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.41 E-value=1e-12 Score=105.91 Aligned_cols=112 Identities=29% Similarity=0.420 Sum_probs=98.2
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEE
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi 107 (150)
+..+.+|||.+..++.+.+++.|.+ ....+.++||.++.+++.++++--..|.-+|+++|++++.++.||++.+||
T Consensus 257 ~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VI 336 (845)
T COG1643 257 EGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVI 336 (845)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEe
Confidence 4678999999999999999999887 457899999999999999998888888667999999999999999999999
Q ss_pred EecCC------------------CChhHHHHhhccccCCCCccEEEEEEecCCCc
Q psy17637 108 NYDLA------------------RDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144 (150)
Q Consensus 108 ~~~~~------------------~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 144 (150)
+.+.- .|.++..||.|||||.+ +|.||-++++++..
T Consensus 337 DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 337 DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred cCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 75543 37888899999999996 89999999975443
No 105
>KOG0387|consensus
Probab=99.40 E-value=2.1e-12 Score=101.64 Aligned_cols=131 Identities=21% Similarity=0.282 Sum_probs=111.4
Q ss_pred hhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcc-ccCceEEEecCCCCHHHHHHHHHHhhcCCc--eEEEEcC
Q psy17637 16 DKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLT-VKEYDVLLLHGDMDQSERNSVITKFKRQEC--RILVATD 92 (150)
Q Consensus 16 ~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~--~vlv~T~ 92 (150)
..-+++.+...|......+.++++|+.++...+.|...|. ..++.++.+.|..+...|..+++.|.+++. -.|++|.
T Consensus 528 ~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTr 607 (923)
T KOG0387|consen 528 RSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTR 607 (923)
T ss_pred hcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEec
Confidence 3334555555555555567899999999999999999888 689999999999999999999999998765 4779999
Q ss_pred CCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCcc--EEEEEEecCCCccc
Q psy17637 93 VAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG--VAYTLVTDKDKDGE 146 (150)
Q Consensus 93 ~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~--~~~~~~~~~~~~~~ 146 (150)
+.+.|+|+..++-||.|||.|+|+.-.|+.-|+.|.|+.. .+|.|++....++.
T Consensus 608 vGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEk 663 (923)
T KOG0387|consen 608 VGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEK 663 (923)
T ss_pred ccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHH
Confidence 9999999999999999999999999999999999999876 46777877665443
No 106
>KOG0390|consensus
Probab=99.40 E-value=5.7e-12 Score=100.23 Aligned_cols=110 Identities=16% Similarity=0.306 Sum_probs=88.3
Q ss_pred CeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCc---eEEEEcCCCcccCCccCCcEEEEecCC
Q psy17637 36 PALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQEC---RILVATDVAARGLDIPHIRTVVNYDLA 112 (150)
Q Consensus 36 ~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~vlv~T~~~~~Gidi~~~~~vi~~~~~ 112 (150)
.+++..+-+...+-+...+.-.|+.+..+||.|+..+|+.+++.|.+... -.|.+|.++++|+++-+++.||.||++
T Consensus 597 ~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~d 676 (776)
T KOG0390|consen 597 KSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPD 676 (776)
T ss_pred EEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCC
Confidence 33333344445555555555569999999999999999999999997543 356777999999999999999999999
Q ss_pred CChhHHHHhhccccCCCCcc--EEEEEEecCCCcc
Q psy17637 113 RDIDTHTHRIGRTGRAGNKG--VAYTLVTDKDKDG 145 (150)
Q Consensus 113 ~~~~~~~q~~GR~~R~g~~~--~~~~~~~~~~~~~ 145 (150)
|+|+.-.|+++|+.|.||.. ++|.|++....++
T Consensus 677 WNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEE 711 (776)
T KOG0390|consen 677 WNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEE 711 (776)
T ss_pred CCchhHHHHHHHhccCCCcceEEEEEeecCCCchH
Confidence 99999999999999999865 5677777665444
No 107
>KOG0329|consensus
Probab=99.39 E-value=8.8e-14 Score=97.21 Aligned_cols=103 Identities=36% Similarity=0.518 Sum_probs=81.7
Q ss_pred CeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCc
Q psy17637 6 GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQEC 85 (150)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 85 (150)
|+.++++.-++.++...+.+.+... ..++++||+.+.... .|+ .
T Consensus 257 GLqQ~YvkLke~eKNrkl~dLLd~L--eFNQVvIFvKsv~Rl-------------------------------~f~---k 300 (387)
T KOG0329|consen 257 GLQQYYVKLKENEKNRKLNDLLDVL--EFNQVVIFVKSVQRL-------------------------------SFQ---K 300 (387)
T ss_pred hHHHHHHhhhhhhhhhhhhhhhhhh--hhcceeEeeehhhhh-------------------------------hhh---h
Confidence 3445555556666666666666655 677899999886651 031 1
Q ss_pred eEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCcc
Q psy17637 86 RILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145 (150)
Q Consensus 86 ~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~ 145 (150)
+ +|+|+.+++|+|+..++.++|||.|.+..+|+++.||+||.|..|.++.|++..+...
T Consensus 301 r-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~ 359 (387)
T KOG0329|consen 301 R-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAK 359 (387)
T ss_pred h-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHH
Confidence 3 7999999999999999999999999999999999999999999999999998766543
No 108
>KOG0385|consensus
Probab=99.39 E-value=4.5e-12 Score=99.67 Aligned_cols=125 Identities=22% Similarity=0.351 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC---ceEEEEcCCCc
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE---CRILVATDVAA 95 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~vlv~T~~~~ 95 (150)
.+..|+..|. +.+.++|||+.-....+-|-.++.-+++....+.|.++-++|...++.|.... .-.|++|.+.+
T Consensus 475 vLDkLL~~Lk---~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGG 551 (971)
T KOG0385|consen 475 VLDKLLPKLK---EQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGG 551 (971)
T ss_pred hHHHHHHHHH---hCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccc
Confidence 3444444444 46889999999999999999999999999999999999999999999998754 35789999999
Q ss_pred ccCCccCCcEEEEecCCCChhHHHHhhccccCCCCcc--EEEEEEecCCCccc
Q psy17637 96 RGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG--VAYTLVTDKDKDGE 146 (150)
Q Consensus 96 ~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~--~~~~~~~~~~~~~~ 146 (150)
-|||+..+++||.||..|+|..-+|+..||.|.|+.. .++.|++...-++.
T Consensus 552 LGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~ 604 (971)
T KOG0385|consen 552 LGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEK 604 (971)
T ss_pred cccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHH
Confidence 9999999999999999999999999999999999876 56777777655443
No 109
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.38 E-value=5.3e-12 Score=101.13 Aligned_cols=124 Identities=23% Similarity=0.290 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC-ceEEEEcCCCcc
Q psy17637 18 EFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE-CRILVATDVAAR 96 (150)
Q Consensus 18 ~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~vlv~T~~~~~ 96 (150)
.+...+++.+......+.|+||.|.|.+..+.|...|...+++...+++.-...+-.-+ . +.|. -.|.|||+++++
T Consensus 410 ~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA~II-a--~AG~~GaVTIATNMAGR 486 (925)
T PRK12903 410 AKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEII-A--KAGQKGAITIATNMAGR 486 (925)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHHHHH-H--hCCCCCeEEEecccccC
Confidence 34557888888777789999999999999999999999999998888886333222222 2 3343 368999999999
Q ss_pred cCCccCCc--------EEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCc
Q psy17637 97 GLDIPHIR--------TVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144 (150)
Q Consensus 97 Gidi~~~~--------~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 144 (150)
|.||.--. +||....|.|...--|..||+||.|++|.+-+|++-+|..
T Consensus 487 GTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L 542 (925)
T PRK12903 487 GTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQL 542 (925)
T ss_pred CcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHH
Confidence 99985322 8999999999999999999999999999999999887653
No 110
>KOG0950|consensus
Probab=99.37 E-value=1.1e-12 Score=104.78 Aligned_cols=111 Identities=24% Similarity=0.366 Sum_probs=91.2
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc--------------------------------------CceEEEecCCCCHHHHH
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK--------------------------------------EYDVLLLHGDMDQSERN 74 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~--------------------------------------~~~~~~~~~~~~~~~r~ 74 (150)
+..++||||++++.|+.++..+... ...++++|.|++.++|+
T Consensus 459 e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~ 538 (1008)
T KOG0950|consen 459 EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEERE 538 (1008)
T ss_pred cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHH
Confidence 4566999999999999877554210 12278999999999999
Q ss_pred HHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecC----CCChhHHHHhhccccCCCC--ccEEEEEEecCCC
Q psy17637 75 SVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDL----ARDIDTHTHRIGRTGRAGN--KGVAYTLVTDKDK 143 (150)
Q Consensus 75 ~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~----~~~~~~~~q~~GR~~R~g~--~~~~~~~~~~~~~ 143 (150)
.+...|+.|.+.|+++|+.+..|++.|...+++-... ..+..+|.||+|||||.|- -|.+++++.+.+.
T Consensus 539 ~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 539 IIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred HHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 9999999999999999999999999999888774322 2378899999999999984 3678888887764
No 111
>KOG0951|consensus
Probab=99.37 E-value=2.8e-12 Score=105.03 Aligned_cols=110 Identities=17% Similarity=0.273 Sum_probs=89.4
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccc-------------------------------------cCceEEE
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV-------------------------------------KEYDVLL 63 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~-------------------------------------~~~~~~~ 63 (150)
+...+++.+. ....++|||+.++++..+.|+.++. ..+.++.
T Consensus 534 e~~yeKVm~~-agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaI 612 (1674)
T KOG0951|consen 534 EACYEKVLEH-AGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAI 612 (1674)
T ss_pred HHHHHHHHHh-CCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhcccee
Confidence 3455566555 4558999999999987776666641 0233789
Q ss_pred ecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEE----EecCCC------ChhHHHHhhccccCCCCc
Q psy17637 64 LHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV----NYDLAR------DIDTHTHRIGRTGRAGNK 131 (150)
Q Consensus 64 ~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi----~~~~~~------~~~~~~q~~GR~~R~g~~ 131 (150)
+|+||++.+|..+.+.|++|.+++||+|-.+++|+++|..+++| -|++-+ ++-+.+||.||+||++.+
T Consensus 613 HhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D 690 (1674)
T KOG0951|consen 613 HHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYD 690 (1674)
T ss_pred eccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccC
Confidence 99999999999999999999999999999999999999987777 355543 788999999999998854
No 112
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.37 E-value=4.8e-12 Score=102.10 Aligned_cols=115 Identities=29% Similarity=0.371 Sum_probs=92.4
Q ss_pred HHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhh----cCCceEEEEcCCCcccC
Q psy17637 23 LVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK----RQECRILVATDVAARGL 98 (150)
Q Consensus 23 ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vlv~T~~~~~Gi 98 (150)
+...+....+.+.+++|-|||.+.+.+++..|+..+.++..+|+.++..+|.+.++.+. .+...|+|+|++++.|+
T Consensus 429 ~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagv 508 (733)
T COG1203 429 LIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGV 508 (733)
T ss_pred hhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEe
Confidence 34444444467899999999999999999999988878999999999999988877544 46678999999999999
Q ss_pred CccCCcEEEEecCCCChhHHHHhhccccCCC--CccEEEEEEec
Q psy17637 99 DIPHIRTVVNYDLARDIDTHTHRIGRTGRAG--NKGVAYTLVTD 140 (150)
Q Consensus 99 di~~~~~vi~~~~~~~~~~~~q~~GR~~R~g--~~~~~~~~~~~ 140 (150)
|+. .+++|-- +..+.+.+||.||++|.| ..+..+++...
T Consensus 509 Did-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 509 DID-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred ccc-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecc
Confidence 994 6776633 334888999999999999 45556655543
No 113
>KOG0922|consensus
Probab=99.36 E-value=4.5e-12 Score=98.25 Aligned_cols=112 Identities=26% Similarity=0.351 Sum_probs=97.0
Q ss_pred CCCCCeeEEehhhhhHHHHHhhcccc--------CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVK--------EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~ 103 (150)
++.+.+|||....++.+.+++.|.+. ..-+.++||+++.+++.++...-..|.-+|+++|+.++..+.|+++
T Consensus 256 E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI 335 (674)
T KOG0922|consen 256 EPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGI 335 (674)
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecce
Confidence 67789999999999999998888654 1135789999999999999888888888999999999999999999
Q ss_pred cEEEEecC------------------CCChhHHHHhhccccCCCCccEEEEEEecCCCc
Q psy17637 104 RTVVNYDL------------------ARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144 (150)
Q Consensus 104 ~~vi~~~~------------------~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 144 (150)
.+||+.+. |-|.++-.||.|||||.| +|.||.++++.+.+
T Consensus 336 ~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 336 RYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYD 393 (674)
T ss_pred EEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHh
Confidence 99997443 347888899999999997 89999999987663
No 114
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.34 E-value=2e-11 Score=96.57 Aligned_cols=125 Identities=24% Similarity=0.290 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcc
Q psy17637 17 KEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96 (150)
Q Consensus 17 ~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 96 (150)
.++...+++.+......+.|+||.|.+.+..|.+...|...+++...+.+.-...+-.-+-+.=+. -.|.|||+++++
T Consensus 410 ~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~--gaVTIATNMAGR 487 (764)
T PRK12326 410 AEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKY--GAVTVSTQMAGR 487 (764)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCC--CcEEEEecCCCC
Confidence 345667888888777899999999999999999999999999998888887443332222222222 368999999999
Q ss_pred cCCccC---------------CcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 97 GLDIPH---------------IRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 97 Gidi~~---------------~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|.||.- ==+||-...+.|...-.|..||+||.|++|.+-+|++-+|.
T Consensus 488 GTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 488 GTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred ccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 999851 12789899999999999999999999999999999987765
No 115
>KOG0953|consensus
Probab=99.33 E-value=1.4e-11 Score=94.08 Aligned_cols=114 Identities=21% Similarity=0.376 Sum_probs=88.2
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCCHHHHHHHHHHhhc--CCceEEEEcCCCcccC
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMDQSERNSVITKFKR--QECRILVATDVAARGL 98 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gi 98 (150)
.++..+.+. ..+.||| |.+++..-.+...+...+.. +++++|++||+.|..=-..|.+ ++.+|||||++++||+
T Consensus 347 ~~~~sl~nl--k~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGL 423 (700)
T KOG0953|consen 347 TALGSLSNL--KPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGL 423 (700)
T ss_pred hhhhhhccC--CCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccc
Confidence 555566555 4456654 34455566777777766554 9999999999999999999998 7889999999999999
Q ss_pred CccCCcEEEEecCCC---------ChhHHHHhhccccCCCC---ccEEEEEEe
Q psy17637 99 DIPHIRTVVNYDLAR---------DIDTHTHRIGRTGRAGN---KGVAYTLVT 139 (150)
Q Consensus 99 di~~~~~vi~~~~~~---------~~~~~~q~~GR~~R~g~---~~~~~~~~~ 139 (150)
|+ +++-||+++..+ +..+..|..|||||.|. .|.+..+..
T Consensus 424 NL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 424 NL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred cc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 98 888999988764 67788999999999874 245555443
No 116
>KOG0391|consensus
Probab=99.33 E-value=2.6e-11 Score=99.00 Aligned_cols=134 Identities=18% Similarity=0.273 Sum_probs=112.3
Q ss_pred EeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC--ceEE
Q psy17637 11 LVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE--CRIL 88 (150)
Q Consensus 11 ~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vl 88 (150)
..++.....+..||+.|. ..+.++|||+...+.++-|-..|..+|+....+.|...-++|+..+++|.... ++.+
T Consensus 1256 qyDcGKLQtLAiLLqQLk---~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfI 1332 (1958)
T KOG0391|consen 1256 QYDCGKLQTLAILLQQLK---SEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFI 1332 (1958)
T ss_pred ecccchHHHHHHHHHHHH---hcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEE
Confidence 334444444444444444 46899999999999999999999999999999999999999999999998754 3677
Q ss_pred EEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCcc--EEEEEEecCCCcccc
Q psy17637 89 VATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG--VAYTLVTDKDKDGEL 147 (150)
Q Consensus 89 v~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~--~~~~~~~~~~~~~~~ 147 (150)
++|...+-|||+.+.+.||+||..|++..-.|..-||.|.|+.. +.|.|+++...++++
T Consensus 1333 LSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeni 1393 (1958)
T KOG0391|consen 1333 LSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENI 1393 (1958)
T ss_pred EeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHH
Confidence 99999999999999999999999999999999999999999754 678888887665543
No 117
>KOG0952|consensus
Probab=99.27 E-value=1.7e-11 Score=99.11 Aligned_cols=117 Identities=22% Similarity=0.288 Sum_probs=88.6
Q ss_pred HHHHhccCCCCCeeEEehhhhhHHHHHhhcccc----C-------------------ceEEEecCCCCHHHHHHHHHHhh
Q psy17637 25 RNLEGANQEVPPALMNLAMQLNAEELANSLTVK----E-------------------YDVLLLHGDMDQSERNSVITKFK 81 (150)
Q Consensus 25 ~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~----~-------------------~~~~~~~~~~~~~~r~~~~~~f~ 81 (150)
+++.+....+.+++|||.++...-..++.|... + -.....|+||...+|.-+.+.|.
T Consensus 340 ~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~ 419 (1230)
T KOG0952|consen 340 DKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFK 419 (1230)
T ss_pred HHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHh
Confidence 333344456789999999988877777777431 0 12678899999999999999999
Q ss_pred cCCceEEEEcCCCcccCCccCCcEEE----EecCCC------ChhHHHHhhccccCCCC--ccEEEEEEecC
Q psy17637 82 RQECRILVATDVAARGLDIPHIRTVV----NYDLAR------DIDTHTHRIGRTGRAGN--KGVAYTLVTDK 141 (150)
Q Consensus 82 ~g~~~vlv~T~~~~~Gidi~~~~~vi----~~~~~~------~~~~~~q~~GR~~R~g~--~~~~~~~~~~~ 141 (150)
.|.++||+||..+.+|+++|.-.++| .||..+ +.-+.+|..|||||++- .|.++.+.+.+
T Consensus 420 ~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 420 EGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred cCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 99999999999999999998755555 255444 56777999999999873 34455444433
No 118
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=4.3e-11 Score=97.35 Aligned_cols=126 Identities=20% Similarity=0.236 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCccc
Q psy17637 18 EFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97 (150)
Q Consensus 18 ~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 97 (150)
++...+++.+......+.|+||-|.|.+..|.|...|...+++.-.+.+.....+-+-+-+.=+. -.|.|||+++++|
T Consensus 612 eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATNMAGRG 689 (1112)
T PRK12901 612 EKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATNMAGRG 689 (1112)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--CcEEEeccCcCCC
Confidence 34568888888887899999999999999999999999999887777776444444333333333 3689999999999
Q ss_pred CCcc--------CCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCcc
Q psy17637 98 LDIP--------HIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145 (150)
Q Consensus 98 idi~--------~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~ 145 (150)
.||. +==+||-...+.|...-.|..||+||.|++|.+-+|++-+|...
T Consensus 690 TDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLm 745 (1112)
T PRK12901 690 TDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLM 745 (1112)
T ss_pred cCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHH
Confidence 9985 22378889999999999999999999999999999999876543
No 119
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.23 E-value=1.3e-10 Score=94.04 Aligned_cols=125 Identities=20% Similarity=0.240 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC-ceEEEEcCCCc
Q psy17637 17 KEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE-CRILVATDVAA 95 (150)
Q Consensus 17 ~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~vlv~T~~~~ 95 (150)
..+...+++.+......+.|+||-|.+.+..|.++..|...+++...+.+.-...+..-+-+ .|. -.|.|||++++
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~---AG~~g~VTIATNmAG 627 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAG---AGKLGAVTVATNMAG 627 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHh---cCCCCcEEEeecccc
Confidence 34556788888887788999999999999999999999999999888887633323222222 233 36899999999
Q ss_pred ccCCccC---C-----cEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCc
Q psy17637 96 RGLDIPH---I-----RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144 (150)
Q Consensus 96 ~Gidi~~---~-----~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 144 (150)
+|.||.- + =+||....|.|...-.|..||+||.|++|.+-+|++-+|..
T Consensus 628 RGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDdL 684 (970)
T PRK12899 628 RGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRL 684 (970)
T ss_pred CCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchHH
Confidence 9999842 1 27888999999999999999999999999999999887653
No 120
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=1e-10 Score=94.40 Aligned_cols=124 Identities=19% Similarity=0.249 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC-ceEEEEcCCCcc
Q psy17637 18 EFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE-CRILVATDVAAR 96 (150)
Q Consensus 18 ~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~vlv~T~~~~~ 96 (150)
++...+++.+......+.|+||-|.|.+..|.|...|...+++.-.+.+.-...+-+-+- +.|. -.|.|||+++++
T Consensus 433 eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGR 509 (913)
T PRK13103 433 EKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGR 509 (913)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCC
Confidence 345688899988878999999999999999999999999998877777764433333332 2343 368999999999
Q ss_pred cCCcc-------------------------------------CCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEe
Q psy17637 97 GLDIP-------------------------------------HIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139 (150)
Q Consensus 97 Gidi~-------------------------------------~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~ 139 (150)
|.||. +==+||-...+.|...-.|..||+||.|++|.+-+|++
T Consensus 510 GTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lS 589 (913)
T PRK13103 510 GTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLS 589 (913)
T ss_pred CCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEE
Confidence 99983 11278888999999999999999999999999999999
Q ss_pred cCCCc
Q psy17637 140 DKDKD 144 (150)
Q Consensus 140 ~~~~~ 144 (150)
-+|..
T Consensus 590 lED~L 594 (913)
T PRK13103 590 LEDSL 594 (913)
T ss_pred cCcHH
Confidence 87653
No 121
>KOG0392|consensus
Probab=99.20 E-value=1e-10 Score=95.89 Aligned_cols=114 Identities=20% Similarity=0.318 Sum_probs=97.4
Q ss_pred CCCeeEEehhhhhHHHHHhhcccc---CceEEEecCCCCHHHHHHHHHHhhcC-CceEE-EEcCCCcccCCccCCcEEEE
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVK---EYDVLLLHGDMDQSERNSVITKFKRQ-ECRIL-VATDVAARGLDIPHIRTVVN 108 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vl-v~T~~~~~Gidi~~~~~vi~ 108 (150)
..+++|||.-+..++-+-..|... .+....+.|..++.+|.++.++|.++ .+++| .+|.+.+-|+|+.+++.||+
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF 1419 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF 1419 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEE
Confidence 578999999999999888777654 34456899999999999999999998 56665 77799999999999999999
Q ss_pred ecCCCChhHHHHhhccccCCCCccE--EEEEEecCCCcccc
Q psy17637 109 YDLARDIDTHTHRIGRTGRAGNKGV--AYTLVTDKDKDGEL 147 (150)
Q Consensus 109 ~~~~~~~~~~~q~~GR~~R~g~~~~--~~~~~~~~~~~~~~ 147 (150)
++..|+|-.-.|++-||.|.|+... +|.+++....++.+
T Consensus 1420 vEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKV 1460 (1549)
T KOG0392|consen 1420 VEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKV 1460 (1549)
T ss_pred EecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHH
Confidence 9999999999999999999998654 67777776665544
No 122
>KOG0389|consensus
Probab=99.20 E-value=1.9e-10 Score=90.83 Aligned_cols=126 Identities=19% Similarity=0.263 Sum_probs=108.5
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCc--eEEEEcCCCcccCC
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQEC--RILVATDVAARGLD 99 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~--~vlv~T~~~~~Gid 99 (150)
.|-..|......+.++|||..-....+-|-..|...+++...+.|...-.+|+.++..|...+. -.|++|.+.+.|||
T Consensus 765 ~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GIN 844 (941)
T KOG0389|consen 765 KLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGIN 844 (941)
T ss_pred HHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceec
Confidence 3333343333457899999999999999999999999999999999999999999999997653 57899999999999
Q ss_pred ccCCcEEEEecCCCChhHHHHhhccccCCCCcc--EEEEEEecCCCcccc
Q psy17637 100 IPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG--VAYTLVTDKDKDGEL 147 (150)
Q Consensus 100 i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~--~~~~~~~~~~~~~~~ 147 (150)
+..+++||.+|...+|-.-.|+--||.|.|+.. .++.|+++...++.+
T Consensus 845 Lt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I 894 (941)
T KOG0389|consen 845 LTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGI 894 (941)
T ss_pred ccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHH
Confidence 999999999999999999999999999999865 578888887665544
No 123
>KOG0923|consensus
Probab=99.19 E-value=6.5e-11 Score=92.12 Aligned_cols=108 Identities=23% Similarity=0.343 Sum_probs=92.4
Q ss_pred cCCCCCeeEEehhhhhHHHHHhhccc---------cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCcc
Q psy17637 31 NQEVPPALMNLAMQLNAEELANSLTV---------KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIP 101 (150)
Q Consensus 31 ~~~~~~~ivf~~~~~~~~~l~~~L~~---------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 101 (150)
..+.+.+|||....+..+...+.|.. ..+-+.++|+.+|.+.+.++.+.--.|--+|++||+.++..+.|+
T Consensus 470 tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTId 549 (902)
T KOG0923|consen 470 TQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTID 549 (902)
T ss_pred ccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeec
Confidence 35678999999988887776666643 245588999999999999999888888889999999999999999
Q ss_pred CCcEEEEecC------------------CCChhHHHHhhccccCCCCccEEEEEEe
Q psy17637 102 HIRTVVNYDL------------------ARDIDTHTHRIGRTGRAGNKGVAYTLVT 139 (150)
Q Consensus 102 ~~~~vi~~~~------------------~~~~~~~~q~~GR~~R~g~~~~~~~~~~ 139 (150)
++.+||+-++ |.|.++-.||.|||||.| +|.|+.+++
T Consensus 550 gI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt 604 (902)
T KOG0923|consen 550 GIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYT 604 (902)
T ss_pred CeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeec
Confidence 9999997444 337778889999999998 899999998
No 124
>KOG0388|consensus
Probab=99.17 E-value=1.3e-10 Score=91.33 Aligned_cols=124 Identities=22% Similarity=0.364 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCc-eEEEEcCCCccc
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQEC-RILVATDVAARG 97 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~-~vlv~T~~~~~G 97 (150)
.+..|+..|.. .+.++++|+...+..+.+-++|..+++....+.|.....+|..++..|+..++ -.|++|.+.+.|
T Consensus 1032 ~LDeLL~kLka---egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLG 1108 (1185)
T KOG0388|consen 1032 VLDELLPKLKA---EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLG 1108 (1185)
T ss_pred eHHHHHHHhhc---CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccc
Confidence 34455555544 58899999999999999999999999999999999999999999999998665 477999999999
Q ss_pred CCccCCcEEEEecCCCChhHHHHhhccccCCCCcc--EEEEEEecCCCcc
Q psy17637 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG--VAYTLVTDKDKDG 145 (150)
Q Consensus 98 idi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~--~~~~~~~~~~~~~ 145 (150)
|++..++.||+|+..|++..-.|.+.||.|.|+.. .+|.+++.+..++
T Consensus 1109 INLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEE 1158 (1185)
T KOG0388|consen 1109 INLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEE 1158 (1185)
T ss_pred ccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHH
Confidence 99999999999999999999999999999999865 4677777655444
No 125
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.12 E-value=2.9e-10 Score=93.06 Aligned_cols=115 Identities=23% Similarity=0.332 Sum_probs=91.1
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccc----------------------------cCce-------------
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV----------------------------KEYD------------- 60 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~----------------------------~~~~------------- 60 (150)
.+++.+... ...|+|+|+.+++.|+..+..+.. .+++
T Consensus 369 ~iv~~l~~~--~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RG 446 (1041)
T COG4581 369 EIVNKLDKD--NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRG 446 (1041)
T ss_pred HHHhhhhhh--cCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhh
Confidence 466666665 678999999999999988777641 0111
Q ss_pred EEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCC---------CChhHHHHhhccccCCCCc
Q psy17637 61 VLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLA---------RDIDTHTHRIGRTGRAGNK 131 (150)
Q Consensus 61 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~---------~~~~~~~q~~GR~~R~g~~ 131 (150)
+..+|++|-|..+..+...|..|-.+|+.+|..++.|+|+|.-++|+ .... -++.+|.|+.|||||.|-+
T Consensus 447 iavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD 525 (1041)
T COG4581 447 IAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLD 525 (1041)
T ss_pred hhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeEEecCCceeecChhHHHHhhhhhcccccc
Confidence 46889999999999999999999999999999999999998755544 3332 2899999999999999954
Q ss_pred --cEEEEEEe
Q psy17637 132 --GVAYTLVT 139 (150)
Q Consensus 132 --~~~~~~~~ 139 (150)
|.+++.-.
T Consensus 526 ~~G~vI~~~~ 535 (1041)
T COG4581 526 VLGTVIVIEP 535 (1041)
T ss_pred ccceEEEecC
Confidence 55555533
No 126
>KOG0920|consensus
Probab=99.10 E-value=2.5e-10 Score=92.50 Aligned_cols=124 Identities=23% Similarity=0.366 Sum_probs=103.0
Q ss_pred hhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcccc-------CceEEEecCCCCHHHHHHHHHHhhcCCceEE
Q psy17637 16 DKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK-------EYDVLLLHGDMDQSERNSVITKFKRQECRIL 88 (150)
Q Consensus 16 ~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 88 (150)
+...+..++..+... ...+.+|||.+.......+++.|... ..-+.++|+.|+..+++.+...--.|..+|+
T Consensus 396 d~~Li~~li~~I~~~-~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKII 474 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDER-EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKII 474 (924)
T ss_pred cHHHHHHHHHhcccC-CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhh
Confidence 445566777777766 56788999999999999999988532 2568899999999999999988888989999
Q ss_pred EEcCCCcccCCccCCcEEEEec--------CCC----------ChhHHHHhhccccCCCCccEEEEEEecC
Q psy17637 89 VATDVAARGLDIPHIRTVVNYD--------LAR----------DIDTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 89 v~T~~~~~Gidi~~~~~vi~~~--------~~~----------~~~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
++|+.++..|.|+++-+||+.+ +.. +.+.-.||.|||||.. +|.||.+++..
T Consensus 475 laTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~-~G~cy~L~~~~ 544 (924)
T KOG0920|consen 475 LATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR-PGICYHLYTRS 544 (924)
T ss_pred hhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc-CCeeEEeechh
Confidence 9999999999999999999744 333 4555679999999984 89999999864
No 127
>KOG0924|consensus
Probab=99.09 E-value=1e-10 Score=91.38 Aligned_cols=108 Identities=24% Similarity=0.350 Sum_probs=90.1
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc--------c--CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV--------K--EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPH 102 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~--------~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~ 102 (150)
..+.+|||....+..|.....+.. . ++.+.++++.++..-+.++.+....|.-+++|+|+.++..+.+|+
T Consensus 562 ~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~g 641 (1042)
T KOG0924|consen 562 PPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPG 641 (1042)
T ss_pred CCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecc
Confidence 457899999887765544444322 2 788999999999999999988888888899999999999999999
Q ss_pred CcEEEEecCC------------------CChhHHHHhhccccCCCCccEEEEEEecC
Q psy17637 103 IRTVVNYDLA------------------RDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 103 ~~~vi~~~~~------------------~~~~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
+.+||+.+.. .|.+.--||.|||||.| +|.||.++++.
T Consensus 642 I~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 642 IRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 9999975553 36667789999999997 89999999984
No 128
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.08 E-value=2.6e-09 Score=86.20 Aligned_cols=79 Identities=22% Similarity=0.237 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCC--HHHHHHHHHHhhcCC-ceEEEEcCCCc
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMD--QSERNSVITKFKRQE-CRILVATDVAA 95 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~--~~~r~~~~~~f~~g~-~~vlv~T~~~~ 95 (150)
+...+++.+....+.+.|+||-|.|.+..|.+...|...+++...+++.-. ..+-+ ++.. .|. -.|.|||++++
T Consensus 409 K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~-IIA~--AG~~G~VTIATNMAG 485 (870)
T CHL00122 409 KWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESE-IVAQ--AGRKGSITIATNMAG 485 (870)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHH-HHHh--cCCCCcEEEeccccC
Confidence 335788888877788999999999999999999999999999888888632 33333 3322 233 36899999999
Q ss_pred ccCCc
Q psy17637 96 RGLDI 100 (150)
Q Consensus 96 ~Gidi 100 (150)
+|.||
T Consensus 486 RGTDI 490 (870)
T CHL00122 486 RGTDI 490 (870)
T ss_pred CCcCe
Confidence 99997
No 129
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.05 E-value=2e-09 Score=88.35 Aligned_cols=113 Identities=21% Similarity=0.276 Sum_probs=99.5
Q ss_pred CCC--CeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC--CceEEEEcCCCcccCCccCCcEEEE
Q psy17637 33 EVP--PALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ--ECRILVATDVAARGLDIPHIRTVVN 108 (150)
Q Consensus 33 ~~~--~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv~T~~~~~Gidi~~~~~vi~ 108 (150)
.+. ++++|+......+-+...|...++....++|.++.+.|...+..|.++ ...+++++.+++.|+++...++||+
T Consensus 708 ~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~ 787 (866)
T COG0553 708 EGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVIL 787 (866)
T ss_pred hcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEE
Confidence 455 899999999999999999998888899999999999999999999986 3456788899999999999999999
Q ss_pred ecCCCChhHHHHhhccccCCCCcc--EEEEEEecCCCcc
Q psy17637 109 YDLARDIDTHTHRIGRTGRAGNKG--VAYTLVTDKDKDG 145 (150)
Q Consensus 109 ~~~~~~~~~~~q~~GR~~R~g~~~--~~~~~~~~~~~~~ 145 (150)
+|+.+++....|+..|+.|.|+.. .++.+++.+...+
T Consensus 788 ~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe 826 (866)
T COG0553 788 FDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEE 826 (866)
T ss_pred eccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHH
Confidence 999999999999999999999765 4667776665433
No 130
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.03 E-value=3.1e-09 Score=84.95 Aligned_cols=122 Identities=20% Similarity=0.318 Sum_probs=90.8
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhh------------------------------------------------------
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLN------------------------------------------------------ 46 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~------------------------------------------------------ 46 (150)
..+++.+......+.++|+|.|.+-.
T Consensus 407 ~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L 486 (730)
T COG1198 407 PALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHL 486 (730)
T ss_pred HHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCee
Confidence 57788887776778888888887654
Q ss_pred ------HHHHHhhccc--cCceEEEecCCCCHHH--HHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCCC---
Q psy17637 47 ------AEELANSLTV--KEYDVLLLHGDMDQSE--RNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLAR--- 113 (150)
Q Consensus 47 ------~~~l~~~L~~--~~~~~~~~~~~~~~~~--r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~--- 113 (150)
.|.+.+.|.. .+.++..+.++.+... -+..+..|..|+.+|||+|+++..|.|+|+++.|...+...
T Consensus 487 ~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~ 566 (730)
T COG1198 487 RAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLG 566 (730)
T ss_pred EEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhc
Confidence 3344443332 2556777777765433 46889999999999999999999999999999987655442
Q ss_pred ---------ChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 114 ---------DIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 114 ---------~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
....+.|-.||+||.+.+|.++.-....+
T Consensus 567 ~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 567 SPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred CCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 34455788999999988888777665554
No 131
>KOG1000|consensus
Probab=99.00 E-value=2.6e-09 Score=81.08 Aligned_cols=117 Identities=17% Similarity=0.222 Sum_probs=100.9
Q ss_pred ccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC-ceE-EEEcCCCcccCCccCCcEEE
Q psy17637 30 ANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE-CRI-LVATDVAARGLDIPHIRTVV 107 (150)
Q Consensus 30 ~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~v-lv~T~~~~~Gidi~~~~~vi 107 (150)
...+..+.+|||......+.+...+.++++....+.|..+...|+...+.|+..+ ..| +++..+++.|+++...+.|+
T Consensus 488 ~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VV 567 (689)
T KOG1000|consen 488 PDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVV 567 (689)
T ss_pred ccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEE
Confidence 3357889999999999999999999999999999999999999999999999754 333 35558999999999999999
Q ss_pred EecCCCChhHHHHhhccccCCCCccE--EEEEEecCCCccc
Q psy17637 108 NYDLARDIDTHTHRIGRTGRAGNKGV--AYTLVTDKDKDGE 146 (150)
Q Consensus 108 ~~~~~~~~~~~~q~~GR~~R~g~~~~--~~~~~~~~~~~~~ 146 (150)
+...+++++-++|.=.|+.|.|+.+. ++.|+-+...+++
T Consensus 568 FaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy 608 (689)
T KOG1000|consen 568 FAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDY 608 (689)
T ss_pred EEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHH
Confidence 99999999999999999999998764 4556666655554
No 132
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.99 E-value=3.9e-09 Score=70.92 Aligned_cols=106 Identities=21% Similarity=0.253 Sum_probs=72.7
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCc--eEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC--CCcccCCccC--CcEE
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEY--DVLLLHGDMDQSERNSVITKFKRQECRILVATD--VAARGLDIPH--IRTV 106 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~--~~~~Gidi~~--~~~v 106 (150)
..+.++||++|.+..+.+.+.+..... ....+.. ......++++.|+.++-.||+++. .+.+|+|+++ +..|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 457899999999999999999986642 1122232 255788999999999989999998 9999999984 6788
Q ss_pred EEecCCCC-h-----------------------------hHHHHhhccccCCCCccEEEEEEec
Q psy17637 107 VNYDLARD-I-----------------------------DTHTHRIGRTGRAGNKGVAYTLVTD 140 (150)
Q Consensus 107 i~~~~~~~-~-----------------------------~~~~q~~GR~~R~g~~~~~~~~~~~ 140 (150)
|...+|.. + ....|.+||+-|..++-.+++++++
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 88888751 1 1114899999998876666666654
No 133
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.98 E-value=8.1e-09 Score=84.95 Aligned_cols=106 Identities=20% Similarity=0.248 Sum_probs=79.6
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCc--EE
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIR--TV 106 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~--~v 106 (150)
..++++||++|.+.++.++..|.. .++. .+..+.. ..|.++++.|+.++..||++|+.+++|+|+|+.. +|
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~v 749 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCL 749 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEE
Confidence 457899999999999999999864 2332 3333333 4788999999999999999999999999998766 56
Q ss_pred EEecCCCC------------------------------hhHHHHhhccccCCCCccEEEEEEecC
Q psy17637 107 VNYDLARD------------------------------IDTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 107 i~~~~~~~------------------------------~~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
|....|.. ...+.|.+||.-|..++..++++++..
T Consensus 750 iI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 750 VIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 66665541 122358999999988666666666543
No 134
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.96 E-value=9.2e-09 Score=82.13 Aligned_cols=108 Identities=20% Similarity=0.324 Sum_probs=81.6
Q ss_pred HHHHHHHHHh--ccCCCCCeeEEehhhhhHHHHHhhcccc-----CceEEEecCCCCHHHHHHHHHHhhcC-C-ceEEEE
Q psy17637 20 AGHLVRNLEG--ANQEVPPALMNLAMQLNAEELANSLTVK-----EYDVLLLHGDMDQSERNSVITKFKRQ-E-CRILVA 90 (150)
Q Consensus 20 ~~~ll~~l~~--~~~~~~~~ivf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g-~-~~vlv~ 90 (150)
...+.+.+.. ......++||||.+..|++.+.+.|.+. +--+..++|. .++-+..+..|... . ..|.|+
T Consensus 410 ~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d--~~~~q~~Id~f~~ke~~P~Iait 487 (875)
T COG4096 410 ARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGD--AEQAQALIDNFIDKEKYPRIAIT 487 (875)
T ss_pred HHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEecc--chhhHHHHHHHHhcCCCCceEEe
Confidence 3344444444 3233689999999999999999988654 2225566666 34445556666653 2 358888
Q ss_pred cCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCC
Q psy17637 91 TDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAG 129 (150)
Q Consensus 91 T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g 129 (150)
.+++..|+|+|.|-+++++..-.|...|.||+||.-|..
T Consensus 488 vdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 488 VDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred hhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccC
Confidence 899999999999999999999999999999999988854
No 135
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.89 E-value=2.6e-08 Score=80.68 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHH-HHHHHHhhcCC-ceEEEEcCCCc
Q psy17637 18 EFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSER-NSVITKFKRQE-CRILVATDVAA 95 (150)
Q Consensus 18 ~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r-~~~~~~f~~g~-~~vlv~T~~~~ 95 (150)
.+...+++.+....+.+.|+||-|.|.+..|.+...|...+++...+++.....++ ..++.. .|. -.|.|||++++
T Consensus 423 ~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAG 500 (939)
T PRK12902 423 AKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAG 500 (939)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCC
Confidence 34557888888877899999999999999999999999999998888886322222 223332 233 36899999999
Q ss_pred ccCCcc
Q psy17637 96 RGLDIP 101 (150)
Q Consensus 96 ~Gidi~ 101 (150)
+|.||.
T Consensus 501 RGTDIk 506 (939)
T PRK12902 501 RGTDII 506 (939)
T ss_pred CCcCEe
Confidence 999973
No 136
>KOG1123|consensus
Probab=98.88 E-value=3.3e-08 Score=75.45 Aligned_cols=132 Identities=15% Similarity=0.248 Sum_probs=97.5
Q ss_pred eEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC-Cce
Q psy17637 8 AYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ-ECR 86 (150)
Q Consensus 8 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~ 86 (150)
..+++++..-. ..+.+-.+.+. .+.++|||....-.+.+.+-+|.+. +++|..++.+|.++++.|+-. .++
T Consensus 520 lLyvMNP~KFr-aCqfLI~~HE~--RgDKiIVFsDnvfALk~YAikl~Kp-----fIYG~Tsq~ERm~ILqnFq~n~~vN 591 (776)
T KOG1123|consen 520 LLYVMNPNKFR-ACQFLIKFHER--RGDKIIVFSDNVFALKEYAIKLGKP-----FIYGPTSQNERMKILQNFQTNPKVN 591 (776)
T ss_pred eeeecCcchhH-HHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHcCCc-----eEECCCchhHHHHHHHhcccCCccc
Confidence 34444444333 33333333333 7889999999988888888877644 689999999999999999864 456
Q ss_pred EEEEcCCCcccCCccCCcEEEEecCCC-ChhHHHHhhccccCCCC------ccEEEEEEecCCCcccc
Q psy17637 87 ILVATDVAARGLDIPHIRTVVNYDLAR-DIDTHTHRIGRTGRAGN------KGVAYTLVTDKDKDGEL 147 (150)
Q Consensus 87 vlv~T~~~~~Gidi~~~~~vi~~~~~~-~~~~~~q~~GR~~R~g~------~~~~~~~~~~~~~~~~~ 147 (150)
.+.-+.+....+|+|.++++|..+... |..+-.||.||..|.-+ ....|.+++.+..++++
T Consensus 592 TIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 592 TIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYY 659 (776)
T ss_pred eEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHh
Confidence 777778888899999999999877764 77888999999988542 23577888877666554
No 137
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.85 E-value=4.8e-08 Score=78.50 Aligned_cols=108 Identities=18% Similarity=0.224 Sum_probs=79.0
Q ss_pred HHHHHHHHHhccC-CCCCeeEEehhhhhHHHHHhhcccc-----CceEEEecCCCCHH---------------------H
Q psy17637 20 AGHLVRNLEGANQ-EVPPALMNLAMQLNAEELANSLTVK-----EYDVLLLHGDMDQS---------------------E 72 (150)
Q Consensus 20 ~~~ll~~l~~~~~-~~~~~ivf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~---------------------~ 72 (150)
...+++.+..... ...+++|||.++++|..+++.|... +.....+++..+.+ .
T Consensus 499 a~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (667)
T TIGR00348 499 AKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEI 578 (667)
T ss_pred HHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhH
Confidence 3344444433211 2589999999999999888876433 23455566553322 1
Q ss_pred HHHHHHHhhc-CCceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCC
Q psy17637 73 RNSVITKFKR-QECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128 (150)
Q Consensus 73 r~~~~~~f~~-g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~ 128 (150)
...++++|++ +.++|||.++++..|+|.|.+++++...+.++. .++|++||+.|.
T Consensus 579 ~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 579 YYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred HHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 2468888976 678999999999999999999999988887775 489999999994
No 138
>KOG0949|consensus
Probab=98.80 E-value=1.2e-08 Score=82.63 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=62.9
Q ss_pred EEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecC-CCChhHHHHhhccccCCCCc--cEEEEE
Q psy17637 61 VLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDL-ARDIDTHTHRIGRTGRAGNK--GVAYTL 137 (150)
Q Consensus 61 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~-~~~~~~~~q~~GR~~R~g~~--~~~~~~ 137 (150)
+.++|++|+...|..+.-.|+.|...||++|..++-|||+|--++|+--|. .-++-.|.|+.|||||.|-+ |.++.+
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 578899999999999999999999999999999999999975444443332 24788999999999999943 444443
No 139
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.73 E-value=1.9e-07 Score=77.58 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcc-CCCCCeeEEehhhhhHHHHHhhccccCc--eEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcc
Q psy17637 20 AGHLVRNLEGAN-QEVPPALMNLAMQLNAEELANSLTVKEY--DVLLLHGDMDQSERNSVITKFKRQECRILVATDVAAR 96 (150)
Q Consensus 20 ~~~ll~~l~~~~-~~~~~~ivf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 96 (150)
...+.+.+.... ...++++|+++|.+..+.++..|..... ....+.-+++...+.++++.|+.++-.||++|..+.+
T Consensus 737 ~~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwE 816 (928)
T PRK08074 737 IEEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWE 816 (928)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccC
Confidence 344544444332 2567899999999999999999865422 1223333444456789999999988889999999999
Q ss_pred cCCccC--CcEEEEecCCCC------------------------------hhHHHHhhccccCCCCccEEEEEEecC
Q psy17637 97 GLDIPH--IRTVVNYDLARD------------------------------IDTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 97 Gidi~~--~~~vi~~~~~~~------------------------------~~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
|+|+|+ +.+||....|.. .-.+.|.+||.-|..++..++++++..
T Consensus 817 GVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 817 GIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 999985 467887666641 122258999999988665566666543
No 140
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.68 E-value=5.5e-07 Score=73.92 Aligned_cols=120 Identities=21% Similarity=0.228 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccC
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGL 98 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 98 (150)
....+.+.+.......++++|+++|.+..+.+++.|......+ ...|.-. .+.+++++|+.++..||++|..+.+|+
T Consensus 632 ~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGV 708 (820)
T PRK07246 632 YAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCC
Confidence 3344555443333356899999999999999999886554333 4444211 246689999998889999999999999
Q ss_pred CccC--CcEEEEecCCCC------------------------------hhHHHHhhccccCCCCccEEEEEEecC
Q psy17637 99 DIPH--IRTVVNYDLARD------------------------------IDTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 99 di~~--~~~vi~~~~~~~------------------------------~~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
|+|+ ...||....|.. .-.+.|.+||.-|..++..++++++..
T Consensus 709 D~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R 783 (820)
T PRK07246 709 DFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRR 783 (820)
T ss_pred CCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCc
Confidence 9973 455565555531 122359999999987665566666654
No 141
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.67 E-value=5.3e-07 Score=72.50 Aligned_cols=105 Identities=23% Similarity=0.257 Sum_probs=78.8
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCCHHHHHHHHHHhhcCCc-eEEEEcCCCcccCCccC--CcEEEE
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMDQSERNSVITKFKRQEC-RILVATDVAARGLDIPH--IRTVVN 108 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~-~vlv~T~~~~~Gidi~~--~~~vi~ 108 (150)
..++++||+++.+.++.+++.+...... ....+|.. .+...++.|..+.- .++|+|..+++|+|+|+ +..||.
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 3448999999999999999999866542 34444543 34478888887655 89999999999999984 467887
Q ss_pred ecCCC------------------------------ChhHHHHhhccccCCCCccEEEEEEec
Q psy17637 109 YDLAR------------------------------DIDTHTHRIGRTGRAGNKGVAYTLVTD 140 (150)
Q Consensus 109 ~~~~~------------------------------~~~~~~q~~GR~~R~g~~~~~~~~~~~ 140 (150)
...|. ....+.|.+||+-|.-++..++++++.
T Consensus 555 ~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 555 VGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 77765 233446999999997766666666665
No 142
>KOG0926|consensus
Probab=98.67 E-value=1.5e-08 Score=80.75 Aligned_cols=83 Identities=30% Similarity=0.427 Sum_probs=71.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCCC------------------ChhHHH
Q psy17637 58 EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLAR------------------DIDTHT 119 (150)
Q Consensus 58 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~------------------~~~~~~ 119 (150)
.+-+.++++=++.+++.++...--.|.--++|+|++++..+.||++.+||+.+.-+ |.++--
T Consensus 604 pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASad 683 (1172)
T KOG0926|consen 604 PLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASAD 683 (1172)
T ss_pred ceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccc
Confidence 44588999999999999999998899988999999999999999999999865543 445557
Q ss_pred HhhccccCCCCccEEEEEEecC
Q psy17637 120 HRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 120 q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
||.|||||.| +|+||.+++..
T Consensus 684 QRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 684 QRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred hhccccCCCC-CCceeehhhhH
Confidence 9999999998 89999998753
No 143
>KOG1015|consensus
Probab=98.67 E-value=8.8e-08 Score=77.79 Aligned_cols=116 Identities=17% Similarity=0.200 Sum_probs=96.2
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccc----------------------cCceEEEecCCCCHHHHHHHHH
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV----------------------KEYDVLLLHGDMDQSERNSVIT 78 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~----------------------~~~~~~~~~~~~~~~~r~~~~~ 78 (150)
..|++.|.....-+.++|||..+-..++.+-..|.. .|.....+.|..+..+|+.+..
T Consensus 1129 iLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~ 1208 (1567)
T KOG1015|consen 1129 ILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAE 1208 (1567)
T ss_pred ehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHH
Confidence 356666665556789999999998888777666632 2455788999999999999999
Q ss_pred HhhcCCc----eEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEE
Q psy17637 79 KFKRQEC----RILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYT 136 (150)
Q Consensus 79 ~f~~g~~----~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~ 136 (150)
.|.+-.. ..||+|.+.+.|+|+-.++-||.||..|++.--.|.+=|+.|.|+..-||.
T Consensus 1209 ~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyi 1270 (1567)
T KOG1015|consen 1209 EFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYI 1270 (1567)
T ss_pred HhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceee
Confidence 9987542 488999999999999999999999999999999999999999998765544
No 144
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.66 E-value=5.8e-07 Score=72.67 Aligned_cols=120 Identities=20% Similarity=0.252 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhh----cCCceEEEEcCCC
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK----RQECRILVATDVA 94 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vlv~T~~~ 94 (150)
....+.+.+.......+.++||++|.+..+.++..|....-.....+|.. .+.++++.|+ .++..||++|..+
T Consensus 519 ~~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf 595 (697)
T PRK11747 519 HTAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 44455555544433455689999999999999998864321234445542 4567776666 4667899999999
Q ss_pred cccCCccC--CcEEEEecCCCC----h--------------------------hHHHHhhccccCCCCccEEEEEEecC
Q psy17637 95 ARGLDIPH--IRTVVNYDLARD----I--------------------------DTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 95 ~~Gidi~~--~~~vi~~~~~~~----~--------------------------~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
.+|+|+|+ +++||...+|.. + -.+.|.+||.-|..++..++++++..
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred cccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 99999985 678887766641 1 12258899999987665566666554
No 145
>KOG0386|consensus
Probab=98.63 E-value=1.5e-07 Score=76.62 Aligned_cols=121 Identities=22% Similarity=0.336 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCc---eEEEEcCCC
Q psy17637 18 EFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQEC---RILVATDVA 94 (150)
Q Consensus 18 ~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~vlv~T~~~ 94 (150)
+.+..++..|.. .+.+++.||....-.+-+-.+|.-.+++...+.|....++|-..+..|..... ..|.+|.+.
T Consensus 713 ELLDRiLPKLka---tgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstrag 789 (1157)
T KOG0386|consen 713 ELLDRILPKLKA---TGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAG 789 (1157)
T ss_pred HHHHhhhHHHHh---cCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeeccc
Confidence 344444444444 58899999999999999999999999999999999999999999999997554 477999999
Q ss_pred cccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccE--EEEEEecC
Q psy17637 95 ARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGV--AYTLVTDK 141 (150)
Q Consensus 95 ~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~--~~~~~~~~ 141 (150)
+.|+|++.++.||.||..|++-...|+..|+.|.|+... ++.+.+-.
T Consensus 790 glglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~ 838 (1157)
T KOG0386|consen 790 GLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVN 838 (1157)
T ss_pred ccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhh
Confidence 999999999999999999999999999999999997654 45454443
No 146
>KOG4439|consensus
Probab=98.62 E-value=5.5e-07 Score=71.17 Aligned_cols=113 Identities=12% Similarity=0.145 Sum_probs=91.5
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc--CCceEE-EEcCCCcccCCccCCcEEEEe
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR--QECRIL-VATDVAARGLDIPHIRTVVNY 109 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vl-v~T~~~~~Gidi~~~~~vi~~ 109 (150)
...+++|...=.....-+...+...|+....+||....++|+.+++.|.. |..+|+ +.-.+.+-|+|+.+.+|+|..
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 45566555555556677788888899999999999999999999999975 445666 444899999999999999999
Q ss_pred cCCCChhHHHHhhccccCCCCccE--EEEEEecCCCcc
Q psy17637 110 DLARDIDTHTHRIGRTGRAGNKGV--AYTLVTDKDKDG 145 (150)
Q Consensus 110 ~~~~~~~~~~q~~GR~~R~g~~~~--~~~~~~~~~~~~ 145 (150)
|+.|++.--.|++.|..|.|+... .+.|+..+.-++
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEq 862 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQ 862 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHH
Confidence 999999999999999999998764 455665554443
No 147
>COG4889 Predicted helicase [General function prediction only]
Probab=98.61 E-value=4.1e-08 Score=79.22 Aligned_cols=97 Identities=22% Similarity=0.404 Sum_probs=76.6
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc-------------cCc--eEEEecCCCCHHHHHHHHH---HhhcCCceEEEEcCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV-------------KEY--DVLLLHGDMDQSERNSVIT---KFKRQECRILVATDVA 94 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~-------------~~~--~~~~~~~~~~~~~r~~~~~---~f~~g~~~vlv~T~~~ 94 (150)
+..++|-||.+.+..+.+++.+.. .++ .+..+.|.|+..+|.+.+. .|...+++||-...++
T Consensus 459 p~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcL 538 (1518)
T COG4889 459 PMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCL 538 (1518)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhh
Confidence 456789999988876655554421 233 4556668999999865543 3456677888888999
Q ss_pred cccCCccCCcEEEEecCCCChhHHHHhhccccCCC
Q psy17637 95 ARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAG 129 (150)
Q Consensus 95 ~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g 129 (150)
++|+|+|.++.||++++-.++-+.+|.+||+.|..
T Consensus 539 SEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 539 SEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred hcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999965
No 148
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.60 E-value=2.5e-07 Score=75.62 Aligned_cols=98 Identities=27% Similarity=0.446 Sum_probs=77.6
Q ss_pred cCeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehh---hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhh
Q psy17637 5 KGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAM---QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~---~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 81 (150)
.++.-.+..+...+ .++..+... +.-.|||+++ ++.++++++.|+..|+++..+|++ .++.++.|.
T Consensus 312 RNIvD~y~~~~~~e---~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~ 380 (1187)
T COG1110 312 RNIVDIYVESESLE---KVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFE 380 (1187)
T ss_pred hheeeeeccCccHH---HHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhc
Confidence 34444455553334 455555444 3468999999 999999999999999999999984 378899999
Q ss_pred cCCceEEEEc----CCCcccCCcc-CCcEEEEecCCC
Q psy17637 82 RQECRILVAT----DVAARGLDIP-HIRTVVNYDLAR 113 (150)
Q Consensus 82 ~g~~~vlv~T----~~~~~Gidi~-~~~~vi~~~~~~ 113 (150)
.|++++||+. ..+.+|+|+| .+.++|+++.|+
T Consensus 381 ~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 381 EGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred cCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 9999999776 4889999998 678999999995
No 149
>KOG1002|consensus
Probab=98.56 E-value=7.3e-07 Score=68.26 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHHhcc--CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC-ce-EEEEcC
Q psy17637 17 KEFAGHLVRNLEGAN--QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE-CR-ILVATD 92 (150)
Q Consensus 17 ~~~~~~ll~~l~~~~--~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vlv~T~ 92 (150)
..+++.|.+.+.... ....+.|||..-....+.+...|.+.|+.++-+.|+|++..|...++.|.+.. +. .||+-.
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 345556666654332 35678999999999999999999999999999999999999999999999764 34 456668
Q ss_pred CCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCc--cEEEEEEecCCCc
Q psy17637 93 VAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNK--GVAYTLVTDKDKD 144 (150)
Q Consensus 93 ~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~--~~~~~~~~~~~~~ 144 (150)
+.+-.+|+..+++|+..||=|+++--.|...|..|.|+. -.++.|+-+...+
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE 752 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIE 752 (791)
T ss_pred cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHH
Confidence 998889999999999999999999999999999999974 3677777665443
No 150
>KOG0925|consensus
Probab=98.52 E-value=6.6e-07 Score=68.27 Aligned_cols=107 Identities=20% Similarity=0.296 Sum_probs=80.1
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccc---------cCceEEEecCCCCHHHHHHHHHHhhc---CC--ceEEEEcCCCccc
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTV---------KEYDVLLLHGDMDQSERNSVITKFKR---QE--CRILVATDVAARG 97 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~---------~~~~~~~~~~~~~~~~r~~~~~~f~~---g~--~~vlv~T~~~~~G 97 (150)
+..+.++||....++.+..++.+.. ..+++.++| +.++..+.+-... |. -+|+|+|..++..
T Consensus 251 ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaets 326 (699)
T KOG0925|consen 251 EEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETS 326 (699)
T ss_pred cCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchhee
Confidence 4578899999999988887777652 145688888 3344444333321 22 2699999999999
Q ss_pred CCccCCcEEEEecC------------------CCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 98 LDIPHIRTVVNYDL------------------ARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 98 idi~~~~~vi~~~~------------------~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+.++++-+||+-++ |.|..+-.||.||+||. .+|.|+.++++.-.
T Consensus 327 ltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~~ 389 (699)
T KOG0925|consen 327 LTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 389 (699)
T ss_pred eeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHhh
Confidence 99999999997443 44788888999999998 48999999987643
No 151
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.50 E-value=2.3e-07 Score=74.82 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCc-eEEEEcCCCc
Q psy17637 17 KEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQEC-RILVATDVAA 95 (150)
Q Consensus 17 ~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~-~vlv~T~~~~ 95 (150)
.++...++..+......+.|+||-+.+.+..|.+...|...+++...+...-...+-+.+.. .|.. -|-|+|++++
T Consensus 412 ~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~---AG~~gaVTiATNMAG 488 (822)
T COG0653 412 EEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQ---AGQPGAVTIATNMAG 488 (822)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHhh---cCCCCcccccccccc
Confidence 45667889999888889999999999999999999999999988777777655333333322 2333 5789999999
Q ss_pred ccCCccCCc-----------EEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 96 RGLDIPHIR-----------TVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 96 ~Gidi~~~~-----------~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
+|.|+.--. +||-.....|...--|..||+||+|.+|..-.+++-++
T Consensus 489 RGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 489 RGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred CCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 999984111 45555555566666699999999999998877776554
No 152
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.43 E-value=8.9e-06 Score=62.12 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCC--cc
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVA--AR 96 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~--~~ 96 (150)
+...++-.+.+ ......+|||+++.-.--.|.++|+..++....++...++.+-.+.-..|..|+..+|+.|.-+ =+
T Consensus 286 F~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfr 364 (442)
T PF06862_consen 286 FTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFR 364 (442)
T ss_pred HHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhh
Confidence 44556666663 2477899999999888888999999999999999999999999999999999999999999633 33
Q ss_pred cCCccCCcEEEEecCCCChhHHHHhhccccCCCC------ccEEEEEEecCCC
Q psy17637 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN------KGVAYTLVTDKDK 143 (150)
Q Consensus 97 Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~------~~~~~~~~~~~~~ 143 (150)
-..+.++.+||+|++|..+.-|...++-...... ...|.++++.-|.
T Consensus 365 Ry~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~ 417 (442)
T PF06862_consen 365 RYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDA 417 (442)
T ss_pred hceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHH
Confidence 4567899999999999999999887765554432 4578888877654
No 153
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.41 E-value=7.1e-06 Score=66.66 Aligned_cols=122 Identities=14% Similarity=0.150 Sum_probs=82.8
Q ss_pred HHHHHHHHHhccC-CCCCeeEEehhhhhHHHHHhhccccCce------EEEecCCCCHHHHHHHHHHhhc----CCceEE
Q psy17637 20 AGHLVRNLEGANQ-EVPPALMNLAMQLNAEELANSLTVKEYD------VLLLHGDMDQSERNSVITKFKR----QECRIL 88 (150)
Q Consensus 20 ~~~ll~~l~~~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~------~~~~~~~~~~~~r~~~~~~f~~----g~~~vl 88 (150)
...+.+.+.+... ..+.++||++|....+.+++.+...+.. ...+..+-...++..+++.|+. +.-.||
T Consensus 507 ~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL 586 (705)
T TIGR00604 507 VRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVL 586 (705)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEE
Confidence 3444444433322 4578999999999999998887654321 1122222223577889999964 445689
Q ss_pred EEc--CCCcccCCccC--CcEEEEecCCC-Ch------------------------------hHHHHhhccccCCCCccE
Q psy17637 89 VAT--DVAARGLDIPH--IRTVVNYDLAR-DI------------------------------DTHTHRIGRTGRAGNKGV 133 (150)
Q Consensus 89 v~T--~~~~~Gidi~~--~~~vi~~~~~~-~~------------------------------~~~~q~~GR~~R~g~~~~ 133 (150)
+++ ..+++|+|+++ +..||..++|. ++ ....|.+||+-|..++-.
T Consensus 587 ~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G 666 (705)
T TIGR00604 587 LSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYG 666 (705)
T ss_pred EEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceE
Confidence 888 89999999985 67898888875 11 112599999999887666
Q ss_pred EEEEEecC
Q psy17637 134 AYTLVTDK 141 (150)
Q Consensus 134 ~~~~~~~~ 141 (150)
++++++..
T Consensus 667 ~iillD~R 674 (705)
T TIGR00604 667 SIVLLDKR 674 (705)
T ss_pred EEEEEehh
Confidence 77777654
No 154
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.30 E-value=1.2e-05 Score=52.53 Aligned_cols=78 Identities=26% Similarity=0.313 Sum_probs=54.9
Q ss_pred EecCCCCHHHHHHHHHHhhcCCc-eEEEEcCCCcccCCccC--CcEEEEecCCCC-------------------------
Q psy17637 63 LLHGDMDQSERNSVITKFKRQEC-RILVATDVAARGLDIPH--IRTVVNYDLARD------------------------- 114 (150)
Q Consensus 63 ~~~~~~~~~~r~~~~~~f~~g~~-~vlv~T~~~~~Gidi~~--~~~vi~~~~~~~------------------------- 114 (150)
.+..+....+..++++.|+...- .||+++..+++|+|+|+ +..||....|..
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~ 105 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDF 105 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhH
Confidence 34445556567889999987543 79999977999999985 467887776641
Q ss_pred ------hhHHHHhhccccCCCCccEEEEEEec
Q psy17637 115 ------IDTHTHRIGRTGRAGNKGVAYTLVTD 140 (150)
Q Consensus 115 ------~~~~~q~~GR~~R~g~~~~~~~~~~~ 140 (150)
.....|.+||+-|..++-.++++++.
T Consensus 106 ~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 106 VSLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 11224889999998766556666543
No 155
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=98.22 E-value=1.4e-05 Score=52.35 Aligned_cols=71 Identities=21% Similarity=0.284 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhcCCc---eEEEEcCC--CcccCCccC--CcEEEEecCCCC----h-----------------------
Q psy17637 70 QSERNSVITKFKRQEC---RILVATDV--AARGLDIPH--IRTVVNYDLARD----I----------------------- 115 (150)
Q Consensus 70 ~~~r~~~~~~f~~g~~---~vlv~T~~--~~~Gidi~~--~~~vi~~~~~~~----~----------------------- 115 (150)
..+..++++.|+.... .||+++.- +++|+|+|+ ++.||..+.|.. +
T Consensus 30 ~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 109 (142)
T smart00491 30 SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYL 109 (142)
T ss_pred CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3345788888887543 58877765 999999986 567888777641 1
Q ss_pred ----hHHHHhhccccCCCCccEEEEEEec
Q psy17637 116 ----DTHTHRIGRTGRAGNKGVAYTLVTD 140 (150)
Q Consensus 116 ----~~~~q~~GR~~R~g~~~~~~~~~~~ 140 (150)
....|.+||+-|..++-.++++++.
T Consensus 110 ~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 110 FDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHHHhCccccCccceEEEEEEec
Confidence 1124899999998766556666654
No 156
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.21 E-value=3.6e-05 Score=61.53 Aligned_cols=107 Identities=10% Similarity=0.097 Sum_probs=78.8
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc----CCceEEEEcCCCcccCCc--------
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR----QECRILVATDVAARGLDI-------- 100 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~Gidi-------- 100 (150)
..++++|-+.+...++.+++.|...--....+.|..+ .+...+++|+. |...||++|+.+.+|+|+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 5678999999999999999998654323455566543 34567888886 467899999999999999
Q ss_pred --cCCcEEEEecCCCCh-------------------------hHHHHhhccccCCCCc--cEEEEEEecC
Q psy17637 101 --PHIRTVVNYDLARDI-------------------------DTHTHRIGRTGRAGNK--GVAYTLVTDK 141 (150)
Q Consensus 101 --~~~~~vi~~~~~~~~-------------------------~~~~q~~GR~~R~g~~--~~~~~~~~~~ 141 (150)
..+++||....|+.+ -.+.|-+||.-|..++ ..++.++++.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 257888887766421 1235889999998766 5666666655
No 157
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.87 E-value=8.1e-05 Score=53.73 Aligned_cols=66 Identities=18% Similarity=0.323 Sum_probs=53.5
Q ss_pred HHHHHHhhcCCceEEEEcCCCcccCCccCC--------cEEEEecCCCChhHHHHhhccccCCCCcc-EEEEEEe
Q psy17637 74 NSVITKFKRQECRILVATDVAARGLDIPHI--------RTVVNYDLARDIDTHTHRIGRTGRAGNKG-VAYTLVT 139 (150)
Q Consensus 74 ~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~--------~~vi~~~~~~~~~~~~q~~GR~~R~g~~~-~~~~~~~ 139 (150)
....+.|.+|+..|+|.+++.+.|+.++.- .+-|.+.+||+....+|..||+.|.++.. -.|.++.
T Consensus 51 ~~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~ 125 (278)
T PF13871_consen 51 IAEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLV 125 (278)
T ss_pred HHHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEee
Confidence 355679999999999999999999998632 35678999999999999999999999743 3344443
No 158
>KOG1016|consensus
Probab=97.85 E-value=4.8e-05 Score=61.40 Aligned_cols=104 Identities=14% Similarity=0.241 Sum_probs=84.5
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCc------------------eEEEecCCCCHHHHHHHHHHhhcCC---ceEEEEcC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEY------------------DVLLLHGDMDQSERNSVITKFKRQE---CRILVATD 92 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~------------------~~~~~~~~~~~~~r~~~~~~f~~g~---~~vlv~T~ 92 (150)
+.+.|||......++.+.+.|....+ ....+.|..+..+|++.+++|.+.. +-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 56788898887777777777755322 2456788899999999999998643 35779999
Q ss_pred CCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEE
Q psy17637 93 VAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTL 137 (150)
Q Consensus 93 ~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~ 137 (150)
+..-|+++-..+-++.|+..|++.--.|.+-|+.|.|+...|+++
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvY 843 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVY 843 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEE
Confidence 999999999999999999999999999999999999987655443
No 159
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.83 E-value=8.7e-05 Score=60.97 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=31.3
Q ss_pred ecchhhHHHHHHHHHHhcc------CCCCCeeEEehhhhhHHHHHhhccc
Q psy17637 13 TDKDKEFAGHLVRNLEGAN------QEVPPALMNLAMQLNAEELANSLTV 56 (150)
Q Consensus 13 ~~~~~~~~~~ll~~l~~~~------~~~~~~ivf~~~~~~~~~l~~~L~~ 56 (150)
.......+..+++.+.... ....++||||+.++.|..|.+.|..
T Consensus 268 e~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 268 ENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 3334455666777766541 3456899999999999999998854
No 160
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.62 E-value=0.00035 Score=58.41 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=61.5
Q ss_pred eEEehhhhhHHHHHhhc----cccC--ceEEEecCCCCHHHHHHHHHHh----------------------hc----CCc
Q psy17637 38 LMNLAMQLNAEELANSL----TVKE--YDVLLLHGDMDQSERNSVITKF----------------------KR----QEC 85 (150)
Q Consensus 38 ivf~~~~~~~~~l~~~L----~~~~--~~~~~~~~~~~~~~r~~~~~~f----------------------~~----g~~ 85 (150)
+|-.++++.+-.++..| ...+ +.+.+||+..+...|..+.+.. .+ +..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 44445544444444444 3333 4578899998777776555442 12 356
Q ss_pred eEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCC
Q psy17637 86 RILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130 (150)
Q Consensus 86 ~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~ 130 (150)
.|+|+|++.+-|+|+ +.+++| .-|.+..+.+|+.||+.|.|.
T Consensus 840 ~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 840 FIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred eEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhccccccc
Confidence 799999999999998 456555 345578999999999999874
No 161
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.42 E-value=0.0021 Score=52.38 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=62.2
Q ss_pred CCCCCeeEEehhhhhHHHHHhhcc----ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCcccCCccCCcEE
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLT----VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAARGLDIPHIRTV 106 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidi~~~~~v 106 (150)
..+.++++-++|+.-+...++.+. ..++++..+||+++..++.+.+....+|+..|+|+|. .+...+.+.++.+|
T Consensus 308 ~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lv 387 (681)
T PRK10917 308 EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLV 387 (681)
T ss_pred HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceE
Confidence 356789999999887776655554 4478999999999999999999999999999999996 44445677788876
Q ss_pred E
Q psy17637 107 V 107 (150)
Q Consensus 107 i 107 (150)
|
T Consensus 388 V 388 (681)
T PRK10917 388 I 388 (681)
T ss_pred E
Confidence 6
No 162
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.30 E-value=0.003 Score=51.41 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=60.8
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc-CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEE
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK-EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~ 108 (150)
.+.++||.+++++-+..+++.|... +..+..+||+++..++.+.+.....|+.+|+|+|..... ..+.++.+||.
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVv 264 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIV 264 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEE
Confidence 4678999999999999888888754 678999999999999999999999999999999963321 34556666653
No 163
>KOG1001|consensus
Probab=97.30 E-value=6.2e-05 Score=60.56 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=88.9
Q ss_pred CCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCc-eEE-EEcCCCcccCCccCCcEEEEecCC
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQEC-RIL-VATDVAARGLDIPHIRTVVNYDLA 112 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~-~vl-v~T~~~~~Gidi~~~~~vi~~~~~ 112 (150)
++++||+.-...++-+...|...+.....+.|.|+...|.+.+..|..+.. .+| ++..+..-|+++-.+++|+..|+=
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 499999999999998888888889999999999999999999999996543 344 677999999999999999999999
Q ss_pred CChhHHHHhhccccCCCCccEE
Q psy17637 113 RDIDTHTHRIGRTGRAGNKGVA 134 (150)
Q Consensus 113 ~~~~~~~q~~GR~~R~g~~~~~ 134 (150)
+++..--|.+-|+.|.|+...+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v 641 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPV 641 (674)
T ss_pred cChHHHHHHHHHHHHhccccee
Confidence 9999999999999999986644
No 164
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.27 E-value=0.0018 Score=50.95 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=61.0
Q ss_pred CCCCCeeEEehhhhhHHHHHhhcccc-CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEE
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVK-EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~ 108 (150)
..+.++|+.++++.-+..+++.|... +..+..+|++++..+|.+.+.....|+..|+|+|...-. ..++++.+||.
T Consensus 23 ~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 23 ALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEE
Confidence 34678999999999988888888754 567889999999999999999999999999999964322 34556676663
No 165
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.21 E-value=0.0032 Score=51.07 Aligned_cols=87 Identities=18% Similarity=0.168 Sum_probs=66.4
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccC--ceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccC
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKE--YDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGL 98 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 98 (150)
+..++.+......++++||.++.......+...|.... ..+..+|+++++.+|.+.+....+|+..|+|+|..... .
T Consensus 175 evyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-a 253 (665)
T PRK14873 175 RRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-A 253 (665)
T ss_pred HHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-e
Confidence 34445555444567899999999999888888887653 46899999999999999999999999999999954421 3
Q ss_pred CccCCcEEEE
Q psy17637 99 DIPHIRTVVN 108 (150)
Q Consensus 99 di~~~~~vi~ 108 (150)
-++++..||.
T Consensus 254 P~~~LgLIIv 263 (665)
T PRK14873 254 PVEDLGLVAI 263 (665)
T ss_pred ccCCCCEEEE
Confidence 3445555553
No 166
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=97.20 E-value=0.0041 Score=50.27 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=61.7
Q ss_pred CCCCCeeEEehhhhhHHHHHhhcc----ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC-CcccCCccCCcEE
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLT----VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV-AARGLDIPHIRTV 106 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~~Gidi~~~~~v 106 (150)
..+.++++-++|+.-+...++.+. ..++++..+||+++..++...++...+|+..|+|+|.. +...+.+.++.+|
T Consensus 282 ~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lv 361 (630)
T TIGR00643 282 EAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALV 361 (630)
T ss_pred HcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceE
Confidence 356789999999888776665554 34789999999999999999999999999999999954 4445667777776
Q ss_pred E
Q psy17637 107 V 107 (150)
Q Consensus 107 i 107 (150)
|
T Consensus 362 V 362 (630)
T TIGR00643 362 I 362 (630)
T ss_pred E
Confidence 6
No 167
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.15 E-value=0.0037 Score=51.16 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=79.6
Q ss_pred chhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCC
Q psy17637 15 KDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVA 94 (150)
Q Consensus 15 ~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 94 (150)
....+...|...|. .++++-||++|...++.+++.....+.++..+++.-+.. ++ +.| ++.+|++-|+++
T Consensus 267 ~~~tF~~~L~~~L~----~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~---dv-~~W--~~~~VviYT~~i 336 (824)
T PF02399_consen 267 DETTFFSELLARLN----AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE---DV-ESW--KKYDVVIYTPVI 336 (824)
T ss_pred chhhHHHHHHHHHh----CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc---cc-ccc--cceeEEEEeceE
Confidence 33445556666664 456788999999999999998888888888888875544 22 223 457899999999
Q ss_pred cccCCccCCc--EEEEe--cCC--CChhHHHHhhccccCCCCccEEEEEEec
Q psy17637 95 ARGLDIPHIR--TVVNY--DLA--RDIDTHTHRIGRTGRAGNKGVAYTLVTD 140 (150)
Q Consensus 95 ~~Gidi~~~~--~vi~~--~~~--~~~~~~~q~~GR~~R~g~~~~~~~~~~~ 140 (150)
.-|+++.... -++-| ... .++.+..|++||+-... ....+++++.
T Consensus 337 tvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~ 387 (824)
T PF02399_consen 337 TVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDA 387 (824)
T ss_pred EEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEec
Confidence 9999986443 24433 222 24556899999976554 4556665554
No 168
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.14 E-value=0.0042 Score=49.77 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=66.5
Q ss_pred CCCCCeeEEehh----hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCC-cccCCccCCcEE
Q psy17637 32 QEVPPALMNLAM----QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVA-ARGLDIPHIRTV 106 (150)
Q Consensus 32 ~~~~~~ivf~~~----~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~-~~Gidi~~~~~v 106 (150)
..+.++.+-++| +.+.+.+.++|...++.+..++|.+..+.|+++++...+|+++++|+|.++ ...+++.++-+|
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLV 388 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLV 388 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEE
Confidence 567889999999 567778888888889999999999999999999999999999999999765 557888888777
Q ss_pred E
Q psy17637 107 V 107 (150)
Q Consensus 107 i 107 (150)
|
T Consensus 389 I 389 (677)
T COG1200 389 I 389 (677)
T ss_pred E
Confidence 6
No 169
>KOG0951|consensus
Probab=97.12 E-value=0.0032 Score=53.67 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccc----------------------cCceEEEecCCCCHHHHHHH
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV----------------------KEYDVLLLHGDMDQSERNSV 76 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~----------------------~~~~~~~~~~~~~~~~r~~~ 76 (150)
+..-....+.+.....++++||+++++++..++..|.. ..++...-|.+++..+..-+
T Consensus 1344 m~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv 1423 (1674)
T KOG0951|consen 1344 MTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIV 1423 (1674)
T ss_pred hhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHH
Confidence 44445556666656789999999999988766655432 11222333889999999999
Q ss_pred HHHhhcCCceEEEEcCCCcccCCccCCcEEE----EecC------CCChhHHHHhhccccCCCCccEEEEEEecC
Q psy17637 77 ITKFKRQECRILVATDVAARGLDIPHIRTVV----NYDL------ARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 77 ~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi----~~~~------~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
-..|..|.+.|+|.... .+|+....--+|+ .||. +-+.++..|+.|++.|.| .|+++....
T Consensus 1424 ~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~~---k~vi~~~~~ 1494 (1674)
T KOG0951|consen 1424 QQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGAG---KCVIMCHTP 1494 (1674)
T ss_pred HHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcCCc---cEEEEecCc
Confidence 99999999999988866 7787764333333 2332 336889999999998854 577666554
No 170
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.08 E-value=0.0034 Score=52.45 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=53.8
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcccc----C-ceEEE-ecCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK----E-YDVLL-LHGDMDQSERNSVITKFKRQECRILVATDV 93 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~----~-~~~~~-~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 93 (150)
.+...+... .++++++.++|.--+...++.|... + ..+.. +|+.|+.+++++.+++|.+|..+|||+|+.
T Consensus 115 ~~~sl~~a~--kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 115 LLMSLYLAK--KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHh--cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 444444444 6688999999988777777776542 2 43333 999999999999999999999999999953
No 171
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.99 E-value=0.0069 Score=50.95 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=62.0
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCcccCCccCCcEEE
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAARGLDIPHIRTVV 107 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidi~~~~~vi 107 (150)
.+.+++|.++|+.-+...++.+.. .++++..++|..+..++.+.++.+..|+..|+|+|. .+...+.+.++.++|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 457899999999988877766543 467888999999999999999999999999999995 445557777888766
Q ss_pred E
Q psy17637 108 N 108 (150)
Q Consensus 108 ~ 108 (150)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 3
No 172
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.97 E-value=0.0025 Score=51.96 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcccc-CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCccc
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK-EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 97 (150)
+.+..++.+......++++||-++-+.-...+...|+.+ +.++..+|+++++.+|.+.+.+..+|+.+|+|+|...- -
T Consensus 230 KTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-F 308 (730)
T COG1198 230 KTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-F 308 (730)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-c
Confidence 334555555555556889999999887777777766654 67899999999999999999999999999999995332 2
Q ss_pred CCccCCcEEE
Q psy17637 98 LDIPHIRTVV 107 (150)
Q Consensus 98 idi~~~~~vi 107 (150)
.-++++..||
T Consensus 309 ~Pf~~LGLII 318 (730)
T COG1198 309 LPFKNLGLII 318 (730)
T ss_pred CchhhccEEE
Confidence 3345666555
No 173
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.94 E-value=0.0075 Score=48.97 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=53.7
Q ss_pred hhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCCC--------
Q psy17637 42 AMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLAR-------- 113 (150)
Q Consensus 42 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~-------- 113 (150)
.|.+..|+|.+.|. +.++..+.+ ..+++.|. ++..|||+|+..+.-+. ++++.|+.+|...
T Consensus 439 Gter~eeeL~~~FP--~~~V~r~d~-------d~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfR 507 (665)
T PRK14873 439 GARRTAEELGRAFP--GVPVVTSGG-------DQVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLR 507 (665)
T ss_pred cHHHHHHHHHHHCC--CCCEEEECh-------HHHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcC
Confidence 33444555666554 444554443 24788897 58999999983222222 4667776555432
Q ss_pred ----ChhHHHHhhccccCCCCccEEEEEE
Q psy17637 114 ----DIDTHTHRIGRTGRAGNKGVAYTLV 138 (150)
Q Consensus 114 ----~~~~~~q~~GR~~R~g~~~~~~~~~ 138 (150)
....+.|..||+||....|.+++..
T Consensus 508 A~Er~~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 508 AAEDTLRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 3444578899999988788887764
No 174
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=96.63 E-value=0.023 Score=48.33 Aligned_cols=77 Identities=6% Similarity=0.122 Sum_probs=65.3
Q ss_pred CCCCCeeEEehhh----hhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEc-CCCcccCCccCCcEE
Q psy17637 32 QEVPPALMNLAMQ----LNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT-DVAARGLDIPHIRTV 106 (150)
Q Consensus 32 ~~~~~~ivf~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~Gidi~~~~~v 106 (150)
..++++.|.++|. .|-+.+.+.+..-.+++..+.--.+.++...+++...+|+++|+|+| ..++.++.+.++-++
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLl 720 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLL 720 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeE
Confidence 4578999999994 45566666666668889999999999999999999999999999999 577888888888887
Q ss_pred EE
Q psy17637 107 VN 108 (150)
Q Consensus 107 i~ 108 (150)
|.
T Consensus 721 II 722 (1139)
T COG1197 721 II 722 (1139)
T ss_pred EE
Confidence 63
No 175
>KOG0921|consensus
Probab=96.50 E-value=0.003 Score=52.20 Aligned_cols=106 Identities=23% Similarity=0.353 Sum_probs=81.7
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc-------CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcE
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK-------EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~ 105 (150)
-.+-+++|.+.....-.|..+|... .+.+...|...+..+..++.+....|..++++.|...+..+.+.++..
T Consensus 642 i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~ 721 (1282)
T KOG0921|consen 642 IDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVY 721 (1282)
T ss_pred CccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeE
Confidence 3566899999999998998888654 456889999998888888988888899999999988888888777666
Q ss_pred EEEecCCC------------------ChhHHHHhhccccCCCCccEEEEEEe
Q psy17637 106 VVNYDLAR------------------DIDTHTHRIGRTGRAGNKGVAYTLVT 139 (150)
Q Consensus 106 vi~~~~~~------------------~~~~~~q~~GR~~R~g~~~~~~~~~~ 139 (150)
|++.+.-. +.....|+.||+||.. +|.+..++.
T Consensus 722 vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR-~G~~f~lcs 772 (1282)
T KOG0921|consen 722 VIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVR-PGFCFHLCS 772 (1282)
T ss_pred EEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceec-ccccccccH
Confidence 66432221 5566689999999873 666666553
No 176
>PRK10689 transcription-repair coupling factor; Provisional
Probab=96.40 E-value=0.032 Score=48.10 Aligned_cols=75 Identities=9% Similarity=0.122 Sum_probs=60.2
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCcccCCccCCcEEE
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAARGLDIPHIRTVV 107 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidi~~~~~vi 107 (150)
.+.+++|-++|+.-+..+++.+.. .++++..++++.+..++.++++....|...|+|+|. .+...+.+.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 567899999999988877776653 356788899999999999999999999999999995 444445666777665
No 177
>KOG0298|consensus
Probab=96.31 E-value=0.0086 Score=51.06 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=76.7
Q ss_pred HHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCC
Q psy17637 24 VRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103 (150)
Q Consensus 24 l~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~ 103 (150)
+..+... +...++|+|+.=-...+.+...+...+++...--+ -++....+..|.+ -...|+-+...+-|+++-+.
T Consensus 1212 il~iK~k-~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA 1286 (1394)
T KOG0298|consen 1212 ILYIKFK-NEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEA 1286 (1394)
T ss_pred HHHHhcc-CcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHHhh
Confidence 3334333 56678999997777777776666655554332222 2344566777775 33466888999999999999
Q ss_pred cEEEEecCCCChhHHHHhhccccCCCCcc
Q psy17637 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKG 132 (150)
Q Consensus 104 ~~vi~~~~~~~~~~~~q~~GR~~R~g~~~ 132 (150)
.+|+..+|..+++.-.|.+||+.|.|+..
T Consensus 1287 ~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1287 THVFLVEPILNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred hhhheeccccCchHHHhhhhhhhhccccc
Confidence 99999999999999999999999999754
No 178
>PRK14701 reverse gyrase; Provisional
Probab=96.20 E-value=0.064 Score=47.89 Aligned_cols=61 Identities=13% Similarity=0.276 Sum_probs=52.2
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc------cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV------KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV 93 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 93 (150)
++.+++|.++|++-+..+++.|.. .++.+..+||+++..++.+.++.+.+|+..|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999988888777764 2467889999999999999999999999999999963
No 179
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.044 Score=43.35 Aligned_cols=87 Identities=24% Similarity=0.295 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHhccCCC-CCeeEEehhhhhHHHHHhhccc----c-CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 18 EFAGHLVRNLEGANQEV-PPALMNLAMQLNAEELANSLTV----K-EYDVLLLHGDMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 18 ~~~~~ll~~l~~~~~~~-~~~ivf~~~~~~~~~l~~~L~~----~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
.+..-+++.+....... .++||.++|++-+..+++.+.. . ++.+..++|+++...+...+ +.| .+|+|+|
T Consensus 82 Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l---~~~-~~ivVaT 157 (513)
T COG0513 82 AFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL---KRG-VDIVVAT 157 (513)
T ss_pred HHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHH---hcC-CCEEEEC
Confidence 34445555554311122 2299999999988877777643 2 57789999999877666444 446 8999999
Q ss_pred C-----CCccc-CCccCCcEEEE
Q psy17637 92 D-----VAARG-LDIPHIRTVVN 108 (150)
Q Consensus 92 ~-----~~~~G-idi~~~~~vi~ 108 (150)
+ .+.++ +++..+.++|.
T Consensus 158 PGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 158 PGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred ccHHHHHHHcCCcchhhcCEEEe
Confidence 6 44555 77788887773
No 180
>KOG2340|consensus
Probab=96.00 E-value=0.035 Score=43.66 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=83.3
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCC--cccCCccCCcEEEEecC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVA--ARGLDIPHIRTVVNYDL 111 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~--~~Gidi~~~~~vi~~~~ 111 (150)
...++||.++.-.--.+.+++++..+....++.-.+...-...-..|..|...+|+-|.-+ =+--++.++..||+|.+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqp 631 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQP 631 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecC
Confidence 4457999999887778899999888888888877777666777788999999999999633 34567889999999999
Q ss_pred CCChhHH---HHhhccccCCC----CccEEEEEEecCCC
Q psy17637 112 ARDIDTH---THRIGRTGRAG----NKGVAYTLVTDKDK 143 (150)
Q Consensus 112 ~~~~~~~---~q~~GR~~R~g----~~~~~~~~~~~~~~ 143 (150)
|..|.=| +-+.+|+.-.| ....|.+++++-|.
T Consensus 632 P~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 632 PNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred CCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 9987655 45555654333 22467777776553
No 181
>KOG0701|consensus
Probab=96.00 E-value=0.0028 Score=55.30 Aligned_cols=95 Identities=23% Similarity=0.329 Sum_probs=73.4
Q ss_pred CCeeEEehhhhhHHHHHhhccccC-ceEEEecCCCC-----------HHHHHHHHHHhhcCCceEEEEcCCCcccCCccC
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKE-YDVLLLHGDMD-----------QSERNSVITKFKRQECRILVATDVAARGLDIPH 102 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~-----------~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~ 102 (150)
-..++||+.+..+-.+.+.+.... ..+..+.|.+. ...+..++..|...++++|++|.++.+|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 377899988777666666654321 12233555432 223578889999999999999999999999999
Q ss_pred CcEEEEecCCCChhHHHHhhccccCCC
Q psy17637 103 IRTVVNYDLARDIDTHTHRIGRTGRAG 129 (150)
Q Consensus 103 ~~~vi~~~~~~~~~~~~q~~GR~~R~g 129 (150)
++.++.++.|....+|+|..||+-+..
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999976543
No 182
>KOG1133|consensus
Probab=95.70 E-value=0.4 Score=39.13 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=81.6
Q ss_pred CeeEEEeecchhhHHHHHHHHHHhccC-CCCCeeEEehhhhhHHHHHhhccccCce-------EEEecCCCCHHHHHHHH
Q psy17637 6 GVAYTLVTDKDKEFAGHLVRNLEGANQ-EVPPALMNLAMQLNAEELANSLTVKEYD-------VLLLHGDMDQSERNSVI 77 (150)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~-------~~~~~~~~~~~~r~~~~ 77 (150)
.+.+.+........+..|-..+.+... -.+-+++|+++.+....+.+.+...|+- .+++-..-+ -+.++
T Consensus 600 p~eftf~~R~s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl 676 (821)
T KOG1133|consen 600 PLEFTFETRESPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVL 676 (821)
T ss_pred ceEEEeeccCChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHH
Confidence 345555555555555555555444321 2367999999999998888887654332 222222112 24555
Q ss_pred HHhh----cCCceEEEEc--CCCcccCCcc--CCcEEEEecCCCC--------------------hh------------H
Q psy17637 78 TKFK----RQECRILVAT--DVAARGLDIP--HIRTVVNYDLARD--------------------ID------------T 117 (150)
Q Consensus 78 ~~f~----~g~~~vlv~T--~~~~~Gidi~--~~~~vi~~~~~~~--------------------~~------------~ 117 (150)
+.+. .|.-.+|.+. ..+++|||+. -+..|+..++|.. +. .
T Consensus 677 ~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkA 756 (821)
T KOG1133|consen 677 EGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKA 756 (821)
T ss_pred HHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHH
Confidence 5554 3444566555 8999999985 3567777777651 11 1
Q ss_pred HHHhhccccCCCCccEEEEEEecC
Q psy17637 118 HTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 118 ~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
.-|.+|||-|..++-.++.+++..
T Consensus 757 VNQsIGRAIRH~~DYA~i~LlD~R 780 (821)
T KOG1133|consen 757 VNQSIGRAIRHRKDYASIYLLDKR 780 (821)
T ss_pred HHHHHHHHHhhhccceeEEEehhh
Confidence 138999999987776777777654
No 183
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=95.48 E-value=0.11 Score=45.20 Aligned_cols=60 Identities=13% Similarity=0.227 Sum_probs=49.0
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc----Cce---EEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK----EYD---VLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~---~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.+.+++|.++|++-+..+++.+... ++. +..+||+++..++...++.+.+|...|+|+|+
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp 186 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTT 186 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 4678999999999888887766542 333 34689999999999999999998899999996
No 184
>KOG0347|consensus
Probab=95.42 E-value=0.045 Score=43.28 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=46.8
Q ss_pred CCCC--eeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 33 EVPP--ALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 33 ~~~~--~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
...+ .||+++|++-+..+.+.|.. .++.+..+.|||....++.+++. ...|+|||+
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 3445 99999999998888887753 48999999999999888888877 457999996
No 185
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=95.06 E-value=0.16 Score=39.50 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=54.5
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccc-----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC----
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV-----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD---- 92 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~---- 92 (150)
.++..+... ....+++|.++|++-+..+++.++. .+..+..++|+.+...+...+. ....|+|+|.
T Consensus 61 pil~~l~~~-~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~ 135 (460)
T PRK11776 61 GLLQKLDVK-RFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRIL 135 (460)
T ss_pred HHHHHhhhc-cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHH
Confidence 344444322 2345799999999988887776653 2678889999988766554333 4568999994
Q ss_pred -CCc-ccCCccCCcEEEE
Q psy17637 93 -VAA-RGLDIPHIRTVVN 108 (150)
Q Consensus 93 -~~~-~Gidi~~~~~vi~ 108 (150)
.+. ..+++.++.++|.
T Consensus 136 ~~l~~~~~~l~~l~~lVi 153 (460)
T PRK11776 136 DHLRKGTLDLDALNTLVL 153 (460)
T ss_pred HHHHcCCccHHHCCEEEE
Confidence 222 3456777777763
No 186
>KOG1513|consensus
Probab=94.98 E-value=0.032 Score=45.99 Aligned_cols=55 Identities=22% Similarity=0.394 Sum_probs=46.9
Q ss_pred HHHhhcCCceEEEEcCCCcccCCccCCcEE--------EEecCCCChhHHHHhhccccCCCCc
Q psy17637 77 ITKFKRQECRILVATDVAARGLDIPHIRTV--------VNYDLARDIDTHTHRIGRTGRAGNK 131 (150)
Q Consensus 77 ~~~f~~g~~~vlv~T~~~~~Gidi~~~~~v--------i~~~~~~~~~~~~q~~GR~~R~g~~ 131 (150)
-++|.+|+..|-|-+.+.+-||.++.-.-| |-+.+|||...-+|..||+.|..+.
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQV 912 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQV 912 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhccccccccc
Confidence 467999999899999999999998755433 5689999999999999999998764
No 187
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=94.85 E-value=0.13 Score=36.69 Aligned_cols=78 Identities=15% Similarity=0.230 Sum_probs=56.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHhhcCC----ceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhcccc-CCCCcc
Q psy17637 58 EYDVLLLHGDMDQSERNSVITKFKRQE----CRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTG-RAGNKG 132 (150)
Q Consensus 58 ~~~~~~~~~~~~~~~r~~~~~~f~~g~----~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~-R~g~~~ 132 (150)
++.+..+.++.+.+. -.+.++. ..|+|+=+.+++|+.++++....+...++....++||.-..| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 688888887654432 3444443 678899999999999999999999999997777777744444 666445
Q ss_pred EEEEEEec
Q psy17637 133 VAYTLVTD 140 (150)
Q Consensus 133 ~~~~~~~~ 140 (150)
.|=++.++
T Consensus 185 l~Ri~~~~ 192 (239)
T PF10593_consen 185 LCRIYMPE 192 (239)
T ss_pred ceEEecCH
Confidence 55555543
No 188
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.73 E-value=0.14 Score=40.05 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=53.1
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
...+||.+++++-++.....|...++.+..++++.+..++..++.....+..+++++|+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 45799999999988888888888899999999999999999999999999999999885
No 189
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=94.48 E-value=0.3 Score=39.78 Aligned_cols=80 Identities=24% Similarity=0.315 Sum_probs=52.1
Q ss_pred HHHHHHhccCCCCCeeEEehhhhhHHHHHhhccc-----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----
Q psy17637 23 LVRNLEGANQEVPPALMNLAMQLNAEELANSLTV-----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD----- 92 (150)
Q Consensus 23 ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~----- 92 (150)
++..+... ....++||.|+|++-+..+++.+.. .++.+..+||+.+.+.+...+ . ....|+|+|.
T Consensus 64 ll~~l~~~-~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~-~~~~IVVgTPgrl~d 138 (629)
T PRK11634 64 LLHNLDPE-LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---R-QGPQIVVGTPGRLLD 138 (629)
T ss_pred HHHHhhhc-cCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---c-CCCCEEEECHHHHHH
Confidence 34444332 3456899999999988877666543 367889999998765544332 2 3468999994
Q ss_pred CCcc-cCCccCCcEEE
Q psy17637 93 VAAR-GLDIPHIRTVV 107 (150)
Q Consensus 93 ~~~~-Gidi~~~~~vi 107 (150)
.+.. .+++.++.+||
T Consensus 139 ~l~r~~l~l~~l~~lV 154 (629)
T PRK11634 139 HLKRGTLDLSKLSGLV 154 (629)
T ss_pred HHHcCCcchhhceEEE
Confidence 2222 35666777666
No 190
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=94.33 E-value=0.56 Score=31.97 Aligned_cols=82 Identities=18% Similarity=0.256 Sum_probs=51.7
Q ss_pred HHHHHHHhcc-CCCCCeeEEehhhhhHHHHHhhcc----ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC---
Q psy17637 22 HLVRNLEGAN-QEVPPALMNLAMQLNAEELANSLT----VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV--- 93 (150)
Q Consensus 22 ~ll~~l~~~~-~~~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~--- 93 (150)
.++..+.... ....++||.+++++.+...+..+. ..++.+..++|+.+..+...... +...|+|+|..
T Consensus 56 ~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~ 131 (203)
T cd00268 56 PILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLL 131 (203)
T ss_pred HHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHH
Confidence 3444444431 245689999999888776655443 34677888999887655543322 55689999942
Q ss_pred --C-cccCCccCCcEEE
Q psy17637 94 --A-ARGLDIPHIRTVV 107 (150)
Q Consensus 94 --~-~~Gidi~~~~~vi 107 (150)
+ ....+++++.++|
T Consensus 132 ~~l~~~~~~~~~l~~lI 148 (203)
T cd00268 132 DLLERGKLDLSKVKYLV 148 (203)
T ss_pred HHHHcCCCChhhCCEEE
Confidence 1 2224566777766
No 191
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=93.53 E-value=0.31 Score=39.24 Aligned_cols=59 Identities=8% Similarity=0.111 Sum_probs=52.3
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
...++|.++++.-++.-...|...++.+..+|++++..++..++.....|...+++.|+
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 45789999999988888888888899999999999999999999999999999998874
No 192
>KOG0339|consensus
Probab=93.45 E-value=0.29 Score=38.66 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=50.6
Q ss_pred CCeeEEehhhhhHHHHHhhc----cccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC------CCcccCCccCCc
Q psy17637 35 PPALMNLAMQLNAEELANSL----TVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD------VAARGLDIPHIR 104 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L----~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~~~ 104 (150)
+=.+|.|+|++-+..+.... +..++.+..+||+++..++.+-++ -...++|||+ +--.++|+.+++
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS 372 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVS 372 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeee
Confidence 34677789999777665444 445899999999999888776655 3358999995 223468888888
Q ss_pred EEEE
Q psy17637 105 TVVN 108 (150)
Q Consensus 105 ~vi~ 108 (150)
++++
T Consensus 373 ~LV~ 376 (731)
T KOG0339|consen 373 YLVL 376 (731)
T ss_pred EEEE
Confidence 7664
No 193
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=92.50 E-value=1.2 Score=34.37 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=47.9
Q ss_pred CCCeeEEehhhhhHHHHHhhc----cccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC------CcccCCccCC
Q psy17637 34 VPPALMNLAMQLNAEELANSL----TVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV------AARGLDIPHI 103 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L----~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidi~~~ 103 (150)
..++||.++|++-+..+++.+ ...++.+..++|+.+...+...+ .+...|+|+|.- ....++...+
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAV 148 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccC
Confidence 357999999999877665543 33478899999998876655443 245689999951 1234556666
Q ss_pred cEEE
Q psy17637 104 RTVV 107 (150)
Q Consensus 104 ~~vi 107 (150)
.+||
T Consensus 149 ~~lV 152 (434)
T PRK11192 149 ETLI 152 (434)
T ss_pred CEEE
Confidence 7665
No 194
>KOG0330|consensus
Probab=92.39 E-value=0.97 Score=34.60 Aligned_cols=87 Identities=23% Similarity=0.235 Sum_probs=59.8
Q ss_pred hhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 16 DKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 16 ~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
.-.++.-+++.|.+. .....++|.++|++-+..+++-+.. -|+.+..+-||++.. .+....++ +..|||||
T Consensus 112 T~afaLPIl~~LL~~-p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~--~q~~~L~k--kPhilVaT 186 (476)
T KOG0330|consen 112 TGAFALPILQRLLQE-PKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMM--LQANQLSK--KPHILVAT 186 (476)
T ss_pred hhhhHHHHHHHHHcC-CCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHH--HHHHHhhc--CCCEEEeC
Confidence 344566778888776 4557899999999988877776654 378899999998743 33333443 45789999
Q ss_pred CC-----C--cccCCccCCcEEE
Q psy17637 92 DV-----A--ARGLDIPHIRTVV 107 (150)
Q Consensus 92 ~~-----~--~~Gidi~~~~~vi 107 (150)
.- + ..|+.+..+.+.|
T Consensus 187 PGrL~dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 187 PGRLWDHLENTKGFSLEQLKFLV 209 (476)
T ss_pred cHHHHHHHHhccCccHHHhHHHh
Confidence 61 1 4566666666544
No 195
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=92.08 E-value=1.7 Score=33.96 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=47.0
Q ss_pred CCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC------CcccCCccCCc
Q psy17637 35 PPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV------AARGLDIPHIR 104 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidi~~~~ 104 (150)
.++||.++|++-+..+.+.+.. .++.+..++|+.+.+..... + .+...|+|+|.- ....+++..+.
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~~~~IiV~TP~rL~~~~~~~~~~l~~v~ 151 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK---L-RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH---H-cCCCcEEEEChHHHHHHHHcCCcccccce
Confidence 3699999999988777665543 36778889999876554322 2 356789999951 13345666777
Q ss_pred EEE
Q psy17637 105 TVV 107 (150)
Q Consensus 105 ~vi 107 (150)
++|
T Consensus 152 ~lV 154 (456)
T PRK10590 152 ILV 154 (456)
T ss_pred EEE
Confidence 665
No 196
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=92.06 E-value=1.3 Score=28.72 Aligned_cols=93 Identities=20% Similarity=0.168 Sum_probs=41.8
Q ss_pred eeEEEeecchh-hHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCc
Q psy17637 7 VAYTLVTDKDK-EFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQEC 85 (150)
Q Consensus 7 ~~~~~~~~~~~-~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 85 (150)
+.|+....... ..+..|+++.. ..+.+++|+|.+.+.++.|-+.|=...-....-|+-... . .....
T Consensus 4 v~Fy~l~~~~~~~~~c~L~~k~~---~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~--------~-~~~~~ 71 (137)
T PF04364_consen 4 VDFYHLSSDDLERFACRLAEKAY---RQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGE--------P-PAARQ 71 (137)
T ss_dssp EEEEE-S----HHHHHHHHHHHH---HTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT---------S-STT--
T ss_pred EEEEEcCCCcHHHHHHHHHHHHH---HcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCC--------C-CCCCC
Confidence 44555555444 44444444444 458899999999999999988884433333344443111 0 11224
Q ss_pred eEEEEcCCCcccCCccCCcEEEEecCCC
Q psy17637 86 RILVATDVAARGLDIPHIRTVVNYDLAR 113 (150)
Q Consensus 86 ~vlv~T~~~~~Gidi~~~~~vi~~~~~~ 113 (150)
.|+++++... ...+..+++||++...
T Consensus 72 PV~i~~~~~~--~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 72 PVLITWDQEA--NPNNHADVLINLSGEV 97 (137)
T ss_dssp SEEEE-TTS------S--SEEEE--SS-
T ss_pred eEEEecCccc--CCCCCCCEEEECCCCC
Confidence 7899886542 1223467888876553
No 197
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=91.24 E-value=0.26 Score=29.13 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=31.1
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 69 (150)
.+..++++||.+-..+...+..|...|+.+..+.|++.
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 45678999998877788888888888888888999874
No 198
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=91.24 E-value=1 Score=39.13 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=50.1
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc--CCceEEEEcC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR--QECRILVATD 92 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~ 92 (150)
...+||.+++++-+..-...|...++.+..+.++++..++..+++.+.. |..++|++|+
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 3579999999998875555566779999999999999999999998876 8889999995
No 199
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=91.18 E-value=1.1 Score=36.47 Aligned_cols=59 Identities=8% Similarity=0.087 Sum_probs=51.9
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
...+||.+++++-+......|...++.+..+++..+.++...++.....|...++++|+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 35799999999988888888888899999999999999998888889999999988873
No 200
>PRK09401 reverse gyrase; Reviewed
Probab=91.10 E-value=1.6 Score=38.33 Aligned_cols=60 Identities=20% Similarity=0.344 Sum_probs=46.0
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc----CceEEEe--cCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK----EYDVLLL--HGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~--~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.+.+++|.++|++-+..+++.+... +..+..+ +++++.+++.+..+.+..+...|+|+|.
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp 187 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTS 187 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECH
Confidence 4678999999999888887777643 3344333 4556677888888889888899999995
No 201
>KOG0331|consensus
Probab=90.96 E-value=1.4 Score=34.99 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=51.3
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc----CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----CCccc-CCccC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK----EYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-----VAARG-LDIPH 102 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G-idi~~ 102 (150)
..+.+||-++|++-+..+...+.+. .++..+++|+.+...+..- .+.| +.|+|+|+ .+..| +++..
T Consensus 164 ~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~---l~~g-vdiviaTPGRl~d~le~g~~~l~~ 239 (519)
T KOG0331|consen 164 DGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRD---LERG-VDVVIATPGRLIDLLEEGSLNLSR 239 (519)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHH---HhcC-CcEEEeCChHHHHHHHcCCccccc
Confidence 3567999999999888777766542 4568899999876555433 3333 58999995 44444 67778
Q ss_pred CcEEEE
Q psy17637 103 IRTVVN 108 (150)
Q Consensus 103 ~~~vi~ 108 (150)
+++++.
T Consensus 240 v~ylVL 245 (519)
T KOG0331|consen 240 VTYLVL 245 (519)
T ss_pred eeEEEe
Confidence 888773
No 202
>KOG0383|consensus
Probab=90.89 E-value=0.29 Score=40.03 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc---CCceEEEEcCCCc
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR---QECRILVATDVAA 95 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~vlv~T~~~~ 95 (150)
++..|...+......+.+++||..-....+-+-..+...+ ....+.|..+..+|+..+..|.. .....|.+|.+.+
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g 694 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGG 694 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccccc
Confidence 4445556666666788999999999999999999998888 88899999999999999999983 3456889998876
Q ss_pred cc
Q psy17637 96 RG 97 (150)
Q Consensus 96 ~G 97 (150)
.|
T Consensus 695 ~g 696 (696)
T KOG0383|consen 695 LG 696 (696)
T ss_pred CC
Confidence 54
No 203
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.80 E-value=2.7 Score=33.00 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=48.4
Q ss_pred CCCeeEEehhhhhHHHHHhhcc----ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CC-----cccCCccCC
Q psy17637 34 VPPALMNLAMQLNAEELANSLT----VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VA-----ARGLDIPHI 103 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~~~ 103 (150)
..++||.++|++-+..+++.+. ..++.+..++|+.+..... +.+..+...|+|+|. .+ ...+.+.++
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l 238 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEARFCDILVATPGRLLDFNQRGEVHLDMV 238 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 4579999999998877666554 3467888999987654433 344556778999995 22 223455666
Q ss_pred cEEE
Q psy17637 104 RTVV 107 (150)
Q Consensus 104 ~~vi 107 (150)
.+||
T Consensus 239 ~~lV 242 (475)
T PRK01297 239 EVMV 242 (475)
T ss_pred ceEE
Confidence 6666
No 204
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.69 E-value=2.5 Score=32.53 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=47.9
Q ss_pred CCCeeEEehhhhhHHHHHhhcc----ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC-C-----cccCCccCC
Q psy17637 34 VPPALMNLAMQLNAEELANSLT----VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV-A-----ARGLDIPHI 103 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~-----~~Gidi~~~ 103 (150)
..++||.++|++-+..+++.+. ..++.+..++|+.+....... +. ....|+|+|.- + ...+++..+
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---l~-~~~~IlV~TP~~l~~~l~~~~~~l~~v 158 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV---LE-SGVDILIGTTGRLIDYAKQNHINLGAI 158 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcccccc
Confidence 3579999999998887655443 347888999998776554433 22 34689999961 1 224566677
Q ss_pred cEEEE
Q psy17637 104 RTVVN 108 (150)
Q Consensus 104 ~~vi~ 108 (150)
.++|.
T Consensus 159 ~~lVi 163 (423)
T PRK04837 159 QVVVL 163 (423)
T ss_pred cEEEE
Confidence 77663
No 205
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=90.67 E-value=1.7 Score=36.74 Aligned_cols=76 Identities=21% Similarity=0.203 Sum_probs=57.4
Q ss_pred chhhHHHHHHHHHHhccCCCCCeeEEehhhh----hHHHHHhhccccC--ceEEEecCCCCHHHHHHHHHHhhcCCceEE
Q psy17637 15 KDKEFAGHLVRNLEGANQEVPPALMNLAMQL----NAEELANSLTVKE--YDVLLLHGDMDQSERNSVITKFKRQECRIL 88 (150)
Q Consensus 15 ~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~----~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 88 (150)
|...++.-+++.+... +..++|++.+++. +++.+.+.+...+ +.+..++|+.++++|+ .+..+...||
T Consensus 98 KTe~FllPIld~~l~~--~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~pp~Il 171 (851)
T COG1205 98 KTESFLLPILDHLLRD--PSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR----AIIRNPPDIL 171 (851)
T ss_pred hhHHHHHHHHHHHhhC--cCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH----HHHhCCCCEE
Confidence 3445666788888776 5568899999955 6777777776655 7899999999998887 5566778999
Q ss_pred EEc-CCCcc
Q psy17637 89 VAT-DVAAR 96 (150)
Q Consensus 89 v~T-~~~~~ 96 (150)
+++ +++..
T Consensus 172 lTNpdMLh~ 180 (851)
T COG1205 172 LTNPDMLHY 180 (851)
T ss_pred EeCHHHHHH
Confidence 998 45443
No 206
>KOG0338|consensus
Probab=90.42 E-value=2.5 Score=33.71 Aligned_cols=97 Identities=16% Similarity=0.172 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHhcc--CCCCCeeEEehhhhhHHHHHhhcc----ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 18 EFAGHLVRNLEGAN--QEVPPALMNLAMQLNAEELANSLT----VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 18 ~~~~~ll~~l~~~~--~~~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
.++.-++..|..-+ .+.-++||.|+|++-+-.++...+ .-.+.+...-||++-..++.+++.- ..|+|+|
T Consensus 234 AF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~----PDIVIAT 309 (691)
T KOG0338|consen 234 AFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSR----PDIVIAT 309 (691)
T ss_pred hhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhC----CCEEEec
Confidence 34445556555432 245689999999996655544432 2368888999999988888776543 5799999
Q ss_pred C-------CCcccCCccCCcEEEEecCCCChhHH
Q psy17637 92 D-------VAARGLDIPHIRTVVNYDLARDIDTH 118 (150)
Q Consensus 92 ~-------~~~~Gidi~~~~~vi~~~~~~~~~~~ 118 (150)
+ --+.++++.++.++|.=....-+.+|
T Consensus 310 PGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeeg 343 (691)
T KOG0338|consen 310 PGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEG 343 (691)
T ss_pred chhHHHHhccCCCccccceeEEEechHHHHHHHH
Confidence 6 23567777777777754444434443
No 207
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=90.33 E-value=0.48 Score=28.53 Aligned_cols=38 Identities=24% Similarity=0.241 Sum_probs=31.8
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 69 (150)
.+..+++++|.+-..+...+..|...|+.+..+.||+.
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 35678999999877888889999988998888888874
No 208
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.30 E-value=1.8 Score=34.90 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=48.6
Q ss_pred CCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----CCcc--cCCccC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-----VAAR--GLDIPH 102 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--Gidi~~ 102 (150)
..++||.++|++-+..+++.+.. .++.+..++|+.+...+...+. +...|+|+|. .+.. .+++..
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~----~~~dIiV~TP~rL~~~l~~~~~~~l~~ 159 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ----QGVDVIIATPGRLIDYVKQHKVVSLHA 159 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh----CCCCEEEECHHHHHHHHHhccccchhh
Confidence 46899999999988877765543 4678899999988776654443 3568999994 2221 245556
Q ss_pred CcEEE
Q psy17637 103 IRTVV 107 (150)
Q Consensus 103 ~~~vi 107 (150)
+.++|
T Consensus 160 v~~lV 164 (572)
T PRK04537 160 CEICV 164 (572)
T ss_pred eeeeE
Confidence 66555
No 209
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=89.57 E-value=3.2 Score=27.07 Aligned_cols=72 Identities=24% Similarity=0.322 Sum_probs=47.6
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHH-HHHHHHHHhhcCCceEEEEcC-CC-----cccCCcc
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQS-ERNSVITKFKRQECRILVATD-VA-----ARGLDIP 101 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~-~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~ 101 (150)
...++++.+++++-++.....+.. .++.+..++++.+.. +....+ .+...|+|+|. .+ ....++.
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~~ 118 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKINIS 118 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTGT
T ss_pred CCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhccccccccccc
Confidence 345899999999888877766654 356788899988754 333333 56678999994 22 1223556
Q ss_pred CCcEEEE
Q psy17637 102 HIRTVVN 108 (150)
Q Consensus 102 ~~~~vi~ 108 (150)
.+++||.
T Consensus 119 ~~~~iVi 125 (169)
T PF00270_consen 119 RLSLIVI 125 (169)
T ss_dssp TESEEEE
T ss_pred cceeecc
Confidence 6777663
No 210
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=88.77 E-value=2.1 Score=35.67 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=46.0
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcccc---CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK---EYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.-+++.+.+. +..++|+.++|++-+......|... ++.+..++|+.+.+++..+ +. ...|+|+|+
T Consensus 70 LPiL~~l~~~--~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i----~~-~~~IivtTP 137 (742)
T TIGR03817 70 LPVLSALADD--PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA----RE-HARYVLTNP 137 (742)
T ss_pred HHHHHHHhhC--CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH----hc-CCCEEEECh
Confidence 3445555443 5668999999999888777766543 5778899999987766433 22 358999995
No 211
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=88.27 E-value=7 Score=32.23 Aligned_cols=68 Identities=18% Similarity=0.044 Sum_probs=46.5
Q ss_pred CCCCCeeEEehhhhhHHHHHhhc----cccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEE
Q psy17637 32 QEVPPALMNLAMQLNAEELANSL----TVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L----~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~v 106 (150)
..+.+++|.++|+.-+...++.+ ...|+++.++.|++++.+++... ...|+++|.. +.|.|.-.-+.+
T Consensus 142 l~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~~-e~~FDyLrd~~~ 213 (656)
T PRK12898 142 LAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTNK-ELVFDYLRDRLA 213 (656)
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECCC-chhhhhcccccc
Confidence 45789999999988776555444 44589999999999877665432 3578888842 336665443433
No 212
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=88.23 E-value=0.47 Score=27.92 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=31.8
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
.+..++|+||.+-..+..++..|...|++ +..+.|++.
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 45678999999888888899999888887 888888864
No 213
>KOG0335|consensus
Probab=87.29 E-value=4.3 Score=32.00 Aligned_cols=70 Identities=23% Similarity=0.399 Sum_probs=48.7
Q ss_pred CCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----CCccc-CCccCC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-----VAARG-LDIPHI 103 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G-idi~~~ 103 (150)
.+.++|..+|++-++.+++.-.. ..+++...+|+.+ .+.+. .+....+.|+|||. .+++| +.++++
T Consensus 152 ~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~--~~~q~--~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~ 227 (482)
T KOG0335|consen 152 YPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTD--LGAQL--RFIKRGCDILVATPGRLKDLIERGKISLDNC 227 (482)
T ss_pred CCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcc--hhhhh--hhhccCccEEEecCchhhhhhhcceeehhhC
Confidence 47899999999999988876543 3677888888833 22222 34445678999995 45555 556677
Q ss_pred cEEE
Q psy17637 104 RTVV 107 (150)
Q Consensus 104 ~~vi 107 (150)
.+++
T Consensus 228 k~~v 231 (482)
T KOG0335|consen 228 KFLV 231 (482)
T ss_pred cEEE
Confidence 7655
No 214
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=86.98 E-value=1 Score=26.89 Aligned_cols=38 Identities=21% Similarity=0.098 Sum_probs=29.9
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCc-eEEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEY-DVLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 69 (150)
.+..++|+||++-..+...+..|...|+ ++..+.|++.
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 3567899999987777888888887787 4777888863
No 215
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=86.91 E-value=1.3 Score=28.14 Aligned_cols=38 Identities=29% Similarity=0.298 Sum_probs=29.8
Q ss_pred CCCCCeeEEeh-hhhhHHHHHhhccccCceEEEecCCCC
Q psy17637 32 QEVPPALMNLA-MQLNAEELANSLTVKEYDVLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~-~~~~~~~l~~~L~~~~~~~~~~~~~~~ 69 (150)
.+..+++|||. +-..+...+..|...|+.+..+.||+.
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 56778999996 455666777777777888889999964
No 216
>PTZ00110 helicase; Provisional
Probab=86.54 E-value=2.8 Score=33.62 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=46.6
Q ss_pred CCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----CCccc-CCccCC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-----VAARG-LDIPHI 103 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G-idi~~~ 103 (150)
...+||.++|++-+..+.+.+.. .++.+..++|+.+....... +.. ...|+|+|+ .+..+ +++..+
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~---l~~-~~~IlVaTPgrL~d~l~~~~~~l~~v 278 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYA---LRR-GVEILIACPGRLIDFLESNVTNLRRV 278 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHH---HHc-CCCEEEECHHHHHHHHHcCCCChhhC
Confidence 45689999999988877666654 35678888998876554333 233 368999995 23333 456667
Q ss_pred cEEE
Q psy17637 104 RTVV 107 (150)
Q Consensus 104 ~~vi 107 (150)
.+||
T Consensus 279 ~~lV 282 (545)
T PTZ00110 279 TYLV 282 (545)
T ss_pred cEEE
Confidence 7665
No 217
>KOG0389|consensus
Probab=86.43 E-value=7.8 Score=32.61 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=46.7
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhh---HHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC--CceEEEEcCCCcc
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLN---AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ--ECRILVATDVAAR 96 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv~T~~~~~ 96 (150)
..+..|..... .+|-||.|++--- .-++..++. .+++..|||. +.+|+++-..+..+ .++|||+|-.+..
T Consensus 437 aFlayLkq~g~-~gpHLVVvPsSTleNWlrEf~kwCP--sl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~ 511 (941)
T KOG0389|consen 437 AFLAYLKQIGN-PGPHLVVVPSSTLENWLREFAKWCP--SLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAA 511 (941)
T ss_pred HHHHHHHHcCC-CCCcEEEecchhHHHHHHHHHHhCC--ceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeeccc
Confidence 34445555533 5677777766321 224444443 6789999998 78999998888876 6789999954443
No 218
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=86.41 E-value=1.3 Score=27.34 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=29.3
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDM 68 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 68 (150)
+..++|+||++-..+..++..|...|++ +..+.|++
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 5678999999977788888888888874 67777875
No 219
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=85.93 E-value=0.85 Score=27.17 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=29.0
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMD 69 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 69 (150)
...++++||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 3567999999876777778888888888777888863
No 220
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=85.92 E-value=7.4 Score=26.43 Aligned_cols=56 Identities=18% Similarity=0.263 Sum_probs=41.5
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc--CceEEEecCCCCHHHHHHHHHHhhcCCceEE
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK--EYDVLLLHGDMDQSERNSVITKFKRQECRIL 88 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 88 (150)
.+.++-++-.+...++.+++.|+.. ++.+.-.||..++++...+++..+....++|
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil 104 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIV 104 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 3456666667778888888888754 6666666999988888888888887665544
No 221
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=85.72 E-value=9.1 Score=32.04 Aligned_cols=55 Identities=18% Similarity=0.113 Sum_probs=41.6
Q ss_pred CCCCeeEEehhhhhHHHHHhh----ccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q psy17637 33 EVPPALMNLAMQLNAEELANS----LTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV 93 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~----L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 93 (150)
.+.++.|.++|..-+...++. +...|+++.++.|+++++++..... ..|+++|..
T Consensus 96 ~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 96 TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 466899999997766555444 4456899999999999887765542 589999965
No 222
>PRK13766 Hef nuclease; Provisional
Probab=85.57 E-value=7.6 Score=32.49 Aligned_cols=76 Identities=13% Similarity=0.224 Sum_probs=48.7
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC-C-----cccCCcc
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV-A-----ARGLDIP 101 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~-----~~Gidi~ 101 (150)
.+..++|+.++++.-++..++.+.. .+.++..++|+.+..+|..... . ..|+|+|.- + ..-+++.
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~---~--~~iiv~T~~~l~~~l~~~~~~~~ 130 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE---K--AKVIVATPQVIENDLIAGRISLE 130 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh---C--CCEEEECHHHHHHHHHcCCCChh
Confidence 3567999999998777555444433 2347888999998887765443 2 468888852 2 2234555
Q ss_pred CCcEEEEecCC
Q psy17637 102 HIRTVVNYDLA 112 (150)
Q Consensus 102 ~~~~vi~~~~~ 112 (150)
.+++||.=...
T Consensus 131 ~~~liVvDEaH 141 (773)
T PRK13766 131 DVSLLIFDEAH 141 (773)
T ss_pred hCcEEEEECCc
Confidence 66776644333
No 223
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=84.51 E-value=1.6 Score=27.25 Aligned_cols=38 Identities=13% Similarity=0.025 Sum_probs=29.5
Q ss_pred CCCCCeeEEehh-hhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 32 QEVPPALMNLAM-QLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~-~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
.+..++++||.+ -..+...+..|...|++ +..+.|++.
T Consensus 77 ~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 77 SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 356789999988 47777788888888875 778888863
No 224
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=84.34 E-value=1.5 Score=26.81 Aligned_cols=37 Identities=22% Similarity=0.108 Sum_probs=29.1
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCce--EEEecCCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYD--VLLLHGDMD 69 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~--~~~~~~~~~ 69 (150)
+..++++||.+-......+..|...|++ +..+.|+++
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 4568999998876677778888888884 778889874
No 225
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=84.27 E-value=0.82 Score=27.57 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=28.9
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
.+..+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 35668999998866667777788888885 777888863
No 226
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=84.19 E-value=3.7 Score=33.28 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=47.6
Q ss_pred CCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
+-+||.++=..-.+.=...|+..|+.+.++++.++.+++..++..+..|.+++|.-+
T Consensus 58 G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyis 114 (590)
T COG0514 58 GLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYIS 114 (590)
T ss_pred CCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEEC
Confidence 467888877766665556677789999999999999999999999999999988444
No 227
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=83.86 E-value=9.6 Score=25.60 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcccc--CceEE-EecCCCCHHHHHHHHHHhhcCCceEEE
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK--EYDVL-LLHGDMDQSERNSVITKFKRQECRILV 89 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vlv 89 (150)
.+..++..... .+.++-++-.+.+.++.+++.|+.. ++.+. ..+|.+++++...+++..+....++++
T Consensus 36 l~~~l~~~~~~---~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 36 LFPDLLRRAEQ---RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred HHHHHHHHHHH---cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 34444443333 3557777778888889898888776 66666 566778888999999999887666553
No 228
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=83.54 E-value=14 Score=31.70 Aligned_cols=57 Identities=9% Similarity=-0.041 Sum_probs=45.4
Q ss_pred CCCCCeeEEehh----hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCC
Q psy17637 32 QEVPPALMNLAM----QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVA 94 (150)
Q Consensus 32 ~~~~~~ivf~~~----~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 94 (150)
..+.++-|.+.+ +..++++...+...|+++.++.+++++++|+.+.. .+|+.+|...
T Consensus 121 l~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~e 181 (913)
T PRK13103 121 LSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNNE 181 (913)
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEcccc
Confidence 467788888877 44567777777888999999999999999997766 6788888543
No 229
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=83.40 E-value=1.4 Score=27.11 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=29.4
Q ss_pred CCCCCeeEEehhhh--hHHHHHhhccccCceEEEecCCCC
Q psy17637 32 QEVPPALMNLAMQL--NAEELANSLTVKEYDVLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~--~~~~l~~~L~~~~~~~~~~~~~~~ 69 (150)
.+..++++||++.. .+..++..|...|+.+..+.|++.
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 45678999998753 577778888888888888888863
No 230
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=83.06 E-value=1.1 Score=28.22 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=31.0
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCc--eEEEecCCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEY--DVLLLHGDMD 69 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~ 69 (150)
...++++||.+-..+...+..|...|+ .+..+.|++.
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 467899999987788888889988888 5888999873
No 231
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=83.02 E-value=2.3 Score=30.88 Aligned_cols=103 Identities=20% Similarity=0.249 Sum_probs=60.8
Q ss_pred eEEEeecchhhHHHHHHHHHHhc-cCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCce
Q psy17637 8 AYTLVTDKDKEFAGHLVRNLEGA-NQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECR 86 (150)
Q Consensus 8 ~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 86 (150)
++...+..-....+..+..+... ..+.-++||++....-.-...+..++....+.++-|.+. +--.+++.. .+
T Consensus 35 ~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~--EDp~~i~~~----aD 108 (275)
T PF12683_consen 35 KHVTYPDNFMSEQETTISKIVSLADDPDMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPH--EDPEVISSA----AD 108 (275)
T ss_dssp EEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS----S-HHHHHHH----SS
T ss_pred EEEeCCCcccchHHHHHHHHHHhccCCCccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCc--CCHHHHhhc----cC
Confidence 34444443233355677777663 346788999999888777777777777667777877743 223333333 46
Q ss_pred EEEEcCCCcccCCcc------CCcEEEEecCCCChh
Q psy17637 87 ILVATDVAARGLDIP------HIRTVVNYDLARDID 116 (150)
Q Consensus 87 vlv~T~~~~~Gidi~------~~~~vi~~~~~~~~~ 116 (150)
+.+.++...+|-.++ ++...+++++|..++
T Consensus 109 i~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfprhms 144 (275)
T PF12683_consen 109 IVVNPDEISRGYTIVWAAKKMGAKTFVHYSFPRHMS 144 (275)
T ss_dssp EEEE--HHHHHHHHHHHHHHTT-S-EEEEEETTGGG
T ss_pred eEeccchhhccHHHHHHHHHcCCceEEEEechhhcc
Confidence 888899999988774 667899999999766
No 232
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=82.84 E-value=8.7 Score=34.77 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=49.1
Q ss_pred CCCeeEEehhhhhHHHHHhhccc----------------cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----
Q psy17637 34 VPPALMNLAMQLNAEELANSLTV----------------KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD----- 92 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~----------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~----- 92 (150)
..++|+.+++++-+..+.+.|+. .++.+...||+.+.++|.+.++ ....|||+|.
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~----~ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR----NPPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc----CCCCEEEecHHHHHH
Confidence 46799999999877766665531 3678999999999988876433 3468999994
Q ss_pred CCc-cc-CCccCCcEEEE
Q psy17637 93 VAA-RG-LDIPHIRTVVN 108 (150)
Q Consensus 93 ~~~-~G-idi~~~~~vi~ 108 (150)
.+. .+ ..+.++.+||.
T Consensus 113 LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 113 MLTSRARETLRGVETVII 130 (1490)
T ss_pred HHhhhhhhhhccCCEEEE
Confidence 111 12 24567777763
No 233
>KOG0350|consensus
Probab=82.55 E-value=6.3 Score=31.39 Aligned_cols=88 Identities=19% Similarity=0.180 Sum_probs=56.6
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHH-HHHHHHHHhhcCCceEEEEcC---
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQS-ERNSVITKFKRQECRILVATD--- 92 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~-~r~~~~~~f~~g~~~vlv~T~--- 92 (150)
.-+++.+-.-.-+.-++||.+++++-+-.++..|.. .|+.+..+.|.-+-+ +..+....-....++|||+|+
T Consensus 202 iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRL 281 (620)
T KOG0350|consen 202 IPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRL 281 (620)
T ss_pred hHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHH
Confidence 346666655445567899999999987777766643 477777777764322 222222222334458999996
Q ss_pred ----CCcccCCccCCcEEEE
Q psy17637 93 ----VAARGLDIPHIRTVVN 108 (150)
Q Consensus 93 ----~~~~Gidi~~~~~vi~ 108 (150)
....|+++..+.++|.
T Consensus 282 VDHl~~~k~f~Lk~LrfLVI 301 (620)
T KOG0350|consen 282 VDHLNNTKSFDLKHLRFLVI 301 (620)
T ss_pred HHhccCCCCcchhhceEEEe
Confidence 2256888888887664
No 234
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=82.52 E-value=8.6 Score=30.60 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=53.6
Q ss_pred CCCeeEEehhhhh----HHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC------CCcccCCccCC
Q psy17637 34 VPPALMNLAMQLN----AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD------VAARGLDIPHI 103 (150)
Q Consensus 34 ~~~~ivf~~~~~~----~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~~ 103 (150)
++++|+-.+|+.- ++.+.+.+.-..-.++.++|..++++|...+.. .+|+|+|+ ..+--+|+.++
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-----~kVfvaTPQvveNDl~~Grid~~dv 132 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-----KKVFVATPQVVENDLKAGRIDLDDV 132 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-----CCEEEeccHHHHhHHhcCccChHHc
Confidence 4478888899764 445555554445568899999999999866433 36888985 22333788888
Q ss_pred cEEEEecCCCChhHH
Q psy17637 104 RTVVNYDLARDIDTH 118 (150)
Q Consensus 104 ~~vi~~~~~~~~~~~ 118 (150)
.++|+=.......+|
T Consensus 133 ~~lifDEAHRAvGny 147 (542)
T COG1111 133 SLLIFDEAHRAVGNY 147 (542)
T ss_pred eEEEechhhhccCcc
Confidence 888864444444433
No 235
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=82.37 E-value=1.3 Score=26.60 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=29.2
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
+..++++||++-..+...+..|...|+. +..+.|++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 4678999999877778888888877874 778888864
No 236
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=82.27 E-value=2.4 Score=24.97 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=30.1
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 68 (150)
.+..+++++|.+-..+...+..|...|+. +..+.|++
T Consensus 54 ~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~ 91 (96)
T cd01444 54 DRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGF 91 (96)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCH
Confidence 46678999999888888888888888874 66777775
No 237
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=82.15 E-value=0.89 Score=27.27 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=28.1
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDM 68 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 68 (150)
+..+++|||.+-..+...+..|...|+. +..+.|++
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~ 96 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGF 96 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcH
Confidence 5678999998866677778888877876 77777875
No 238
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=81.99 E-value=1.2 Score=26.93 Aligned_cols=36 Identities=11% Similarity=0.058 Sum_probs=28.6
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDM 68 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 68 (150)
+..++++||.+-..+...+..|...|++ +..+.|++
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~ 101 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSW 101 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcH
Confidence 4678999999977788888888888875 66677775
No 239
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=81.68 E-value=1.8 Score=25.81 Aligned_cols=37 Identities=11% Similarity=0.216 Sum_probs=28.9
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCc-eEEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEY-DVLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~ 68 (150)
....++++||++-..+...+..|...|+ .+..+.|++
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~ 89 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGL 89 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCH
Confidence 3467899999997777888888877666 566788885
No 240
>KOG0348|consensus
Probab=81.15 E-value=7.8 Score=31.23 Aligned_cols=101 Identities=16% Similarity=0.224 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhccC-----CCCCeeEEehhhhhHHHHHhhcccc---Cce--EEEecCCCCHHHHHHHHHHhhcCCceE
Q psy17637 18 EFAGHLVRNLEGANQ-----EVPPALMNLAMQLNAEELANSLTVK---EYD--VLLLHGDMDQSERNSVITKFKRQECRI 87 (150)
Q Consensus 18 ~~~~~ll~~l~~~~~-----~~~~~ivf~~~~~~~~~l~~~L~~~---~~~--~~~~~~~~~~~~r~~~~~~f~~g~~~v 87 (150)
..+.-+++.|..... .+.=++|.++|++-|..+++.+... -.. ...+-|| +.|..--.+.+.| ++|
T Consensus 190 AYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGG---EkkKSEKARLRKG-iNI 265 (708)
T KOG0348|consen 190 AYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGG---EKKKSEKARLRKG-INI 265 (708)
T ss_pred HHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecc---cccccHHHHHhcC-ceE
Confidence 344456666665532 2445899999999888766655432 211 1223333 2233333455666 799
Q ss_pred EEEcC-------CCcccCCccCCcEEEE--------ecCCCChhHHHHhh
Q psy17637 88 LVATD-------VAARGLDIPHIRTVVN--------YDLARDIDTHTHRI 122 (150)
Q Consensus 88 lv~T~-------~~~~Gidi~~~~~vi~--------~~~~~~~~~~~q~~ 122 (150)
||+|+ .-...+++..+.|+|+ +++-+++...+-.+
T Consensus 266 LIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v 315 (708)
T KOG0348|consen 266 LIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAV 315 (708)
T ss_pred EEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHH
Confidence 99996 1233456667777774 44445555555444
No 241
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=81.11 E-value=1.7 Score=25.71 Aligned_cols=37 Identities=27% Similarity=0.281 Sum_probs=26.9
Q ss_pred CCCCeeEEehh--hhhHHHHHhhccccCc-eEEEecCCCC
Q psy17637 33 EVPPALMNLAM--QLNAEELANSLTVKEY-DVLLLHGDMD 69 (150)
Q Consensus 33 ~~~~~ivf~~~--~~~~~~l~~~L~~~~~-~~~~~~~~~~ 69 (150)
+..++++||.+ +..+...+..|...|+ .+..+.||+.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 46689999988 3445677777877776 4677888863
No 242
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=81.07 E-value=14 Score=24.80 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcccc--CceEEE-ecCCCCHHHHHHHHHHhhcCCceEE
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK--EYDVLL-LHGDMDQSERNSVITKFKRQECRIL 88 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~-~~~~~~~~~r~~~~~~f~~g~~~vl 88 (150)
.+..+++.... .+.++-++-.+.+.++.+.+.|+.. ++.+.- .||.+..++...+++..+....+++
T Consensus 34 l~~~ll~~~~~---~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv 103 (171)
T cd06533 34 LMPALLELAAQ---KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADIL 103 (171)
T ss_pred HHHHHHHHHHH---cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEE
Confidence 33444444433 3567777778888888888887664 666655 7788888887778888887766544
No 243
>KOG1132|consensus
Probab=81.06 E-value=17 Score=31.01 Aligned_cols=107 Identities=20% Similarity=0.173 Sum_probs=63.3
Q ss_pred CCCeeEEehhhhhHHHHHhhcccc-------CceEEEecCCCCHHHHHHHHHHhhcCC--------ceEEEEcCCCcccC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVK-------EYDVLLLHGDMDQSERNSVITKFKRQE--------CRILVATDVAARGL 98 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~--------~~vlv~T~~~~~Gi 98 (150)
....|+|.++....+++....... .++- ++.+--+..+-.+++..|.++. .-..||-...++|+
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 445999999998877774444332 1111 2222223333445555554322 23447778999999
Q ss_pred Ccc--CCcEEEEecCCC-------------------C-------------------hhHHHHhhccccCCCCccEEEEEE
Q psy17637 99 DIP--HIRTVVNYDLAR-------------------D-------------------IDTHTHRIGRTGRAGNKGVAYTLV 138 (150)
Q Consensus 99 di~--~~~~vi~~~~~~-------------------~-------------------~~~~~q~~GR~~R~g~~~~~~~~~ 138 (150)
|+. +...||..+.|. + ....-|.+||+.|..++=..+.++
T Consensus 640 DFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~ 719 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILC 719 (945)
T ss_pred CccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEe
Confidence 985 445677766664 1 111248999999987665555566
Q ss_pred ecC
Q psy17637 139 TDK 141 (150)
Q Consensus 139 ~~~ 141 (150)
+..
T Consensus 720 D~R 722 (945)
T KOG1132|consen 720 DDR 722 (945)
T ss_pred ech
Confidence 654
No 244
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=80.03 E-value=3.7 Score=35.39 Aligned_cols=48 Identities=25% Similarity=0.343 Sum_probs=37.8
Q ss_pred hcCCceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCC
Q psy17637 81 KRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAG 129 (150)
Q Consensus 81 ~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g 129 (150)
.....++||.++++-.|.|-|.++.+.. |-|--.-..+|.+.|+.|.-
T Consensus 590 ~~d~~kilIV~dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~~ 637 (962)
T COG0610 590 KDDPLDLLIVVDMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRVF 637 (962)
T ss_pred cCCCCCEEEEEccccccCCccccceEEe-ccccccchHHHHHHHhccCC
Confidence 3456789999999999999998887664 44444556799999999954
No 245
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=79.74 E-value=11 Score=32.25 Aligned_cols=54 Identities=13% Similarity=0.090 Sum_probs=41.2
Q ss_pred CCCCeeEEehhhhhHHHHHhhc----cccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 33 EVPPALMNLAMQLNAEELANSL----TVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L----~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.+..+.|.++|+.-+...++.+ ...|+.+.+++|++++.++.... ...|+++|+
T Consensus 122 ~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~ 179 (896)
T PRK13104 122 SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTN 179 (896)
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECC
Confidence 4567999999987666555544 44589999999999998886554 368999995
No 246
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=79.58 E-value=27 Score=27.33 Aligned_cols=65 Identities=11% Similarity=0.066 Sum_probs=39.8
Q ss_pred HHHHHHHHHhccCCCCCeeEEehhhh----------hHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy17637 20 AGHLVRNLEGANQEVPPALMNLAMQL----------NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 20 ~~~ll~~l~~~~~~~~~~ivf~~~~~----------~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
..+.++......-..+.++|...+.+ .+..+++++++.|..+..+--.++.-.+.+-.-....|+
T Consensus 204 VrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAEyFRDqG~~VLL~mDSlTRfA~AqREI~LA~GE 278 (441)
T COG1157 204 VREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGE 278 (441)
T ss_pred HHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHhcCC
Confidence 44566666555223444555554433 356788888888888888877777665555544555555
No 247
>KOG1131|consensus
Probab=79.55 E-value=26 Score=28.43 Aligned_cols=106 Identities=15% Similarity=0.157 Sum_probs=61.5
Q ss_pred CCeeEEehhhhhHHHHHhhccccCce------EEEecCCCCHHHHHHHHHHhh----cCCceEE--EEcCCCcccCCccC
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKEYD------VLLLHGDMDQSERNSVITKFK----RQECRIL--VATDVAARGLDIPH 102 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~~~------~~~~~~~~~~~~r~~~~~~f~----~g~~~vl--v~T~~~~~Gidi~~ 102 (150)
.-.+.|..+.-..+.+.......|+- -...-+..+..+-.-.++..+ .|.--|| |+-...++|+|+.+
T Consensus 531 dG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~h 610 (755)
T KOG1131|consen 531 DGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFDH 610 (755)
T ss_pred CceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCccccc
Confidence 44677777766666555544433221 022233333333344444443 3444455 77789999999977
Q ss_pred Cc--EEEEecCCCCh------------------------------hHHHHhhccccCCCCccEEEEEEec
Q psy17637 103 IR--TVVNYDLARDI------------------------------DTHTHRIGRTGRAGNKGVAYTLVTD 140 (150)
Q Consensus 103 ~~--~vi~~~~~~~~------------------------------~~~~q~~GR~~R~g~~~~~~~~~~~ 140 (150)
.. .||.++.|.-. ..-.|..||+.|..++-..-+|.++
T Consensus 611 hyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~K~dYg~mI~aDk 680 (755)
T KOG1131|consen 611 HYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRGKTDYGLMIFADK 680 (755)
T ss_pred ccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhccccceeeEeeeh
Confidence 66 89999999621 1124889999987544444444443
No 248
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=79.48 E-value=4.7 Score=26.33 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=30.1
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCc-eEEEecCCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEY-DVLLLHGDMD 69 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 69 (150)
...++||+|.+-..+...+..|...|+ ++..+.||+.
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 457899999987777788888887777 6889999963
No 249
>KOG0329|consensus
Probab=79.45 E-value=3.7 Score=29.87 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=48.8
Q ss_pred CCeeEEehhhhhHHHHHhhccc-----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC------CCcccCCccCC
Q psy17637 35 PPALMNLAMQLNAEELANSLTV-----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD------VAARGLDIPHI 103 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~~ 103 (150)
-.++|.|.|++-+-.+.+.+.. .+.++..+.||++-+.-++.++. -..|+|+|+ +-...+++.++
T Consensus 111 vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~v 186 (387)
T KOG0329|consen 111 VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNV 186 (387)
T ss_pred EEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhc
Confidence 4578889998877666544432 37889999999988777776655 457899996 22445666677
Q ss_pred cEEEE
Q psy17637 104 RTVVN 108 (150)
Q Consensus 104 ~~vi~ 108 (150)
.+.+.
T Consensus 187 khFvl 191 (387)
T KOG0329|consen 187 KHFVL 191 (387)
T ss_pred ceeeh
Confidence 66553
No 250
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=79.44 E-value=4 Score=25.40 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=30.0
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
.+..++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 62 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 62 GKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 35678999999888888888888888875 556788864
No 251
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=78.98 E-value=2.6 Score=36.11 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=40.6
Q ss_pred CceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCC
Q psy17637 84 ECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128 (150)
Q Consensus 84 ~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~ 128 (150)
..+.+++-+++.+|-|.|++-.+.-+....|...-.|.+||..|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 457889999999999999999998899888988899999999994
No 252
>PRK02362 ski2-like helicase; Provisional
Probab=78.65 E-value=9.4 Score=31.87 Aligned_cols=68 Identities=24% Similarity=0.186 Sum_probs=46.3
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc---CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----CCccc-CCccCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK---EYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-----VAARG-LDIPHI 103 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G-idi~~~ 103 (150)
++.++|+.+++++-+.+.+..+... ++++..++|+.+.... . .+...|+|+|. .+..+ ..+.++
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~--l~~~~IiV~Tpek~~~llr~~~~~l~~v 138 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE-----W--LGDNDIIVATSEKVDSLLRNGAPWLDDI 138 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-----c--cCCCCEEEECHHHHHHHHhcChhhhhhc
Confidence 5678999999999999888877654 7889999998754321 1 13457999994 11112 234566
Q ss_pred cEEE
Q psy17637 104 RTVV 107 (150)
Q Consensus 104 ~~vi 107 (150)
.+||
T Consensus 139 ~lvV 142 (737)
T PRK02362 139 TCVV 142 (737)
T ss_pred CEEE
Confidence 7666
No 253
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=78.53 E-value=2.1 Score=25.80 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=27.7
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
..++++||.+-..+...+..|...|+. +..+.|+++
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 567999998866777778888888875 667888864
No 254
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=78.50 E-value=4.3 Score=24.48 Aligned_cols=63 Identities=24% Similarity=0.309 Sum_probs=40.6
Q ss_pred eEEehhhhhHHHHHhhccccCceEEEecCCCCHH------------HHHHHHHHhhcCCceEEEEcCCCcccCCc
Q psy17637 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQS------------ERNSVITKFKRQECRILVATDVAARGLDI 100 (150)
Q Consensus 38 ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~------------~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 100 (150)
|+.+.....+..+++.|......+....|.+-.. ...+.+.....+.-.|+++||.-.+|-.+
T Consensus 2 liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EGe~I 76 (100)
T PF01751_consen 2 LIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREGELI 76 (100)
T ss_dssp EEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHHHHH
T ss_pred EEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHHHHH
Confidence 6778888888899998875556666666664211 12344444444556899999888777554
No 255
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=77.64 E-value=2.8 Score=35.35 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=41.2
Q ss_pred CceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCC
Q psy17637 84 ECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128 (150)
Q Consensus 84 ~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~ 128 (150)
..+.+.+-.++.+|-|-|++=.+.-+....|..+=.|.+||..|.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 367889999999999999999999999999999999999999994
No 256
>PLN02160 thiosulfate sulfurtransferase
Probab=77.58 E-value=4.5 Score=26.07 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=30.4
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
.+..++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 35678999999988888888888888875 667788853
No 257
>PRK13767 ATP-dependent helicase; Provisional
Probab=77.47 E-value=15 Score=31.43 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=39.0
Q ss_pred CCCeeEEehhhhhHHHHHhhcc---------------c-cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 34 VPPALMNLAMQLNAEELANSLT---------------V-KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~---------------~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
..++|+.+++++-+..++..|. . .++.+...||+.+..++.+.+. ....|+|+|+
T Consensus 84 ~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~----~~p~IlVtTP 154 (876)
T PRK13767 84 KVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK----KPPHILITTP 154 (876)
T ss_pred CeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh----CCCCEEEecH
Confidence 4469999999987765544322 1 1667889999999888765543 3457999995
No 258
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=77.34 E-value=6.5 Score=25.64 Aligned_cols=77 Identities=19% Similarity=0.123 Sum_probs=44.5
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEE-cCCCcccCCc
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVA-TDVAARGLDI 100 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~-T~~~~~Gidi 100 (150)
.+...+.+....+.+++|+|.+.+.++.|-+.|=...-....-|+-... . ......|+++ ++.. +.
T Consensus 17 ~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~--------~-~~~~~PV~l~~~~~~----~~ 83 (142)
T PRK05728 17 LLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGE--------G-PAAGQPVLLTWPGKR----NA 83 (142)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCC--------C-CCCCCCEEEEcCCCC----CC
Confidence 3444444444568999999999999998888874433333444542110 0 1123478887 3211 23
Q ss_pred cCCcEEEEecC
Q psy17637 101 PHIRTVVNYDL 111 (150)
Q Consensus 101 ~~~~~vi~~~~ 111 (150)
+...++||++.
T Consensus 84 ~~~~~LinL~~ 94 (142)
T PRK05728 84 NHRDLLINLDG 94 (142)
T ss_pred CCCcEEEECCC
Confidence 44566777654
No 259
>KOG0340|consensus
Probab=77.31 E-value=8.5 Score=29.38 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 17 KEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 17 ~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
..+...+++.+.+. ..+.=++||++|++-+-.+++.|.. .++++..+.|+++.-..... ......++|+|+
T Consensus 59 ~AFaLPil~rLsed-P~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~----L~~rPHvVvatP 133 (442)
T KOG0340|consen 59 AAFALPILNRLSED-PYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAI----LSDRPHVVVATP 133 (442)
T ss_pred hhhhHHHHHhhccC-CCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhh----cccCCCeEecCc
Confidence 34555667777665 3455689999999988888888754 47889999999764322211 234456888885
No 260
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=77.16 E-value=5.3 Score=24.89 Aligned_cols=49 Identities=16% Similarity=0.140 Sum_probs=23.6
Q ss_pred cCeeEEEeecchhhHHHHHHHHHHhc-cCCCCCeeEEehhhhhHHHHHhh
Q psy17637 5 KGVAYTLVTDKDKEFAGHLVRNLEGA-NQEVPPALMNLAMQLNAEELANS 53 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~~ivf~~~~~~~~~l~~~ 53 (150)
.|+.|...+.........-+..+... ....+|+++||.|-..+-.|+..
T Consensus 56 ~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 56 LGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp CT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCSHHHHHHHHH
T ss_pred cCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCChhHHHHHHH
Confidence 46777776665333223333333221 12356999999998777776654
No 261
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=77.12 E-value=14 Score=22.55 Aligned_cols=57 Identities=19% Similarity=0.132 Sum_probs=38.9
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc---CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK---EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV 93 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 93 (150)
...++++.|++...++.....+... +..+..+++........ ........++++|..
T Consensus 29 ~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~~ 88 (144)
T cd00046 29 KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTPG 88 (144)
T ss_pred cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEECcH
Confidence 5679999999998887776666543 36777888876544443 222345678888854
No 262
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=76.77 E-value=4.7 Score=24.76 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=27.7
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 68 (150)
...++++||.+-..+...+..|...|+......|++
T Consensus 59 ~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 94 (104)
T PRK10287 59 KNDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGL 94 (104)
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCH
Confidence 345799999987777888888888888765666774
No 263
>KOG0345|consensus
Probab=75.37 E-value=22 Score=28.24 Aligned_cols=90 Identities=19% Similarity=0.171 Sum_probs=56.8
Q ss_pred hhhHHHHHHHHHHhccCC--CC--CeeEEehhhhhHHHHHhhc---cc--cCceEEEecCCCCHHHHHHHHHHhhcCCce
Q psy17637 16 DKEFAGHLVRNLEGANQE--VP--PALMNLAMQLNAEELANSL---TV--KEYDVLLLHGDMDQSERNSVITKFKRQECR 86 (150)
Q Consensus 16 ~~~~~~~ll~~l~~~~~~--~~--~~ivf~~~~~~~~~l~~~L---~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 86 (150)
...++.-+++.+.+.... .. -++|.++|++-+..+.+.+ .. .++.+..+.||.+.+ +-++.|++...+
T Consensus 57 TlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~---~Di~~fkee~~n 133 (567)
T KOG0345|consen 57 TLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVE---EDIKTFKEEGPN 133 (567)
T ss_pred hhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHH---HHHHHHHHhCCc
Confidence 345566667777333222 22 4799999998665443332 22 366788899996653 445678877789
Q ss_pred EEEEcC-----CCcc---cCCccCCcEEEE
Q psy17637 87 ILVATD-----VAAR---GLDIPHIRTVVN 108 (150)
Q Consensus 87 vlv~T~-----~~~~---Gidi~~~~~vi~ 108 (150)
|||+|+ ++.+ ++++.++.++|.
T Consensus 134 IlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 134 ILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EEEeCchhHHHHHhchhhhccccccceEEe
Confidence 999996 3332 455567777663
No 264
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=75.36 E-value=19 Score=24.89 Aligned_cols=65 Identities=11% Similarity=0.100 Sum_probs=41.9
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHH--------HHHHHHHHhhcCCc-eEEEEcCCCcccC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQS--------ERNSVITKFKRQEC-RILVATDVAARGL 98 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~--------~r~~~~~~f~~g~~-~vlv~T~~~~~Gi 98 (150)
...+.|..+.+.+.+..+-+. ....-...+++|.+++- .-...+++..++.+ .|++||+.-.+|=
T Consensus 77 Rd~~~icVVe~p~Dv~a~E~~-~~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTvEGe 150 (198)
T COG0353 77 RDKSQLCVVEEPKDVLALEKT-GEFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTVEGE 150 (198)
T ss_pred cCCceEEEEcchHHHHHHHHh-cccCeeEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCCCccch
Confidence 345667777776666555443 33333566777654433 33667788888888 8999998776653
No 265
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=74.91 E-value=9.1 Score=32.54 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=34.3
Q ss_pred CCCCeeEEe-hhhhhHHHHHhhccc---------------------------cCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy17637 33 EVPPALMNL-AMQLNAEELANSLTV---------------------------KEYDVLLLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 33 ~~~~~ivf~-~~~~~~~~l~~~L~~---------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
...+.|||+ ++++-++.+++.+.. ..+++..++|+.+.+... .... ..
T Consensus 60 ~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~---~~l~-~~ 135 (844)
T TIGR02621 60 KVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW---MLDP-HR 135 (844)
T ss_pred cccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH---HhcC-CC
Confidence 456788877 887765544433321 147788999998754332 2233 33
Q ss_pred ceEEEEc
Q psy17637 85 CRILVAT 91 (150)
Q Consensus 85 ~~vlv~T 91 (150)
..|+|+|
T Consensus 136 p~IIVgT 142 (844)
T TIGR02621 136 PAVIVGT 142 (844)
T ss_pred CcEEEEC
Confidence 5799999
No 266
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=74.71 E-value=22 Score=30.10 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=40.5
Q ss_pred CCCCCeeEEehhhhhHHH----HHhhccccCceEEEecCCCC-HHHHHHHHHHhhcCCceEEEEcC
Q psy17637 32 QEVPPALMNLAMQLNAEE----LANSLTVKEYDVLLLHGDMD-QSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~----l~~~L~~~~~~~~~~~~~~~-~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
..+..+.|.++|+.-+.. +...+...|+++..+.|+++ +.+++... ...|+++|.
T Consensus 117 l~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y------~~dIvygT~ 176 (790)
T PRK09200 117 LEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY------EADIIYTTN 176 (790)
T ss_pred HcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc------CCCEEEECC
Confidence 367799999999776554 44444556999999999999 77776432 267899983
No 267
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=74.43 E-value=33 Score=25.45 Aligned_cols=123 Identities=16% Similarity=0.142 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHhc--cCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHH------------Hh-hc
Q psy17637 18 EFAGHLVRNLEGA--NQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVIT------------KF-KR 82 (150)
Q Consensus 18 ~~~~~ll~~l~~~--~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~------------~f-~~ 82 (150)
.++..|++.+... .....+++|.+...+..+-+-..|...++.+-.+.|.+-..+....-. .. ..
T Consensus 99 ~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (297)
T PF11496_consen 99 QFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDK 178 (297)
T ss_dssp HHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-------------------
T ss_pred HHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccc
Confidence 3455666666321 245678999999999999999999988888888888765555543330 00 11
Q ss_pred --CCceEEEEc-CCCccc----CCccCCcEEEEecCCCChh-HHHHhhccccCCCCccEEEEEEec
Q psy17637 83 --QECRILVAT-DVAARG----LDIPHIRTVVNYDLARDID-THTHRIGRTGRAGNKGVAYTLVTD 140 (150)
Q Consensus 83 --g~~~vlv~T-~~~~~G----idi~~~~~vi~~~~~~~~~-~~~q~~GR~~R~g~~~~~~~~~~~ 140 (150)
....|-++| +-+... ..-..++.||-||+..+.. ..+|.+-..+|.+..--++.++..
T Consensus 179 ~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~~ 244 (297)
T PF11496_consen 179 GSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVPS 244 (297)
T ss_dssp ---SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEET
T ss_pred cccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEeeC
Confidence 122333444 434331 2233667899999886543 344554333333223345555543
No 268
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=74.26 E-value=12 Score=26.41 Aligned_cols=70 Identities=7% Similarity=-0.104 Sum_probs=39.3
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceE--EEec-CCCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDV--LLLH-GDMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~--~~~~-~~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
+.|++.+........++++++.. ..-+.+.+.|.+.|..+ ..+| ....+.........+..+.+.+++-|
T Consensus 105 e~L~~~~~~~~~~~~~vL~~rg~-~~r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~i~f~ 177 (240)
T PRK09189 105 VRLAETVAAALAPTARLLYLAGR-PRAPVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPFDAVLLY 177 (240)
T ss_pred HHHHHHHHHhcCCCCcEEEeccC-cccchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCCCEEEEe
Confidence 35666665542355666666655 44578888888877653 2233 22222233455667777776655444
No 269
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=74.03 E-value=30 Score=27.66 Aligned_cols=71 Identities=10% Similarity=0.206 Sum_probs=43.6
Q ss_pred CCCCeeEEehhhhhHHHHHhhcc----ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----CC-cccCCccC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLT----VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-----VA-ARGLDIPH 102 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~ 102 (150)
....+||.++|++-+..+.+.+. ..++.+..+.|+.+..... ..+..| ..|+|+|. .+ ..++++.+
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~~~-~~IiV~TPgrL~~~l~~~~~~l~~ 270 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQQG-VELIVGTPGRLIDLLSKHDIELDN 270 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhcCC-CCEEEECHHHHHHHHHcCCccchh
Confidence 45679999999998766554433 2345677777776544332 233333 68999994 22 22456666
Q ss_pred CcEEE
Q psy17637 103 IRTVV 107 (150)
Q Consensus 103 ~~~vi 107 (150)
+.++|
T Consensus 271 v~~lV 275 (518)
T PLN00206 271 VSVLV 275 (518)
T ss_pred eeEEE
Confidence 77665
No 270
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=73.53 E-value=4.8 Score=22.98 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=29.3
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCc-eEEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEY-DVLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 69 (150)
.+..++|+||.+...+..++..|...|+ .+..+.|++.
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 4677899999887788888888888865 4667777753
No 271
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=73.48 E-value=7 Score=23.80 Aligned_cols=36 Identities=8% Similarity=-0.046 Sum_probs=27.2
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 68 (150)
...++++||.+-..+...+..|...|+.....-||+
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 92 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGI 92 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCH
Confidence 456788999987778888888888887654445774
No 272
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=73.21 E-value=6.5 Score=23.61 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=23.6
Q ss_pred CCCCCeeEEehhhhhHHHHHhh-----ccccCc-eEEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANS-----LTVKEY-DVLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~-----L~~~~~-~~~~~~~~~~ 69 (150)
....++|+||.+-......+.. |...|+ .+..+.||+.
T Consensus 65 ~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 65 DKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp TTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred cccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 4556788999444443333333 665566 7888888853
No 273
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=73.07 E-value=8.3 Score=23.38 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=28.7
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
....+++++|.+-..+...+..|...|+. +..+.|++.
T Consensus 56 ~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 56 DFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 45668889998877777777788877875 667888863
No 274
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=73.02 E-value=18 Score=22.84 Aligned_cols=55 Identities=4% Similarity=0.084 Sum_probs=37.1
Q ss_pred CeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 36 PALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 36 ~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.++|=+.+.+.+....+.+.+.+.++..-+.++++++...+.+ +.. +..++++.+
T Consensus 69 DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~-~a~-~~~vl~a~N 123 (124)
T PF01113_consen 69 DVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEE-LAK-KIPVLIAPN 123 (124)
T ss_dssp SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHH-HTT-TSEEEE-SS
T ss_pred CEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH-Hhc-cCCEEEeCC
Confidence 4777777888888888888888988888888887766655544 332 378887764
No 275
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=72.71 E-value=26 Score=29.91 Aligned_cols=54 Identities=15% Similarity=0.057 Sum_probs=40.4
Q ss_pred CCCCeeEEehhhhhH----HHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 33 EVPPALMNLAMQLNA----EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~----~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.+..+-|.+++..-+ +.+...+...|+++..+.|+++++++..... ..|+++|.
T Consensus 121 ~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~ 178 (830)
T PRK12904 121 TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTN 178 (830)
T ss_pred cCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECC
Confidence 455788888886544 4555555566999999999999998887743 57888884
No 276
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=72.41 E-value=5.7 Score=28.66 Aligned_cols=38 Identities=8% Similarity=0.115 Sum_probs=30.5
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCc
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEY 59 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~ 59 (150)
..++.+....+++..+++|+++.++++++.+.|++.++
T Consensus 176 ~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 176 NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 45566666557789999999999999999999987753
No 277
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=72.35 E-value=33 Score=24.61 Aligned_cols=55 Identities=9% Similarity=0.201 Sum_probs=38.9
Q ss_pred CCCeeEEehhhhhHHHHHhhcccc-CceEE-EecCCCCHHHHHHHHHHhhcCCceEE
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVK-EYDVL-LLHGDMDQSERNSVITKFKRQECRIL 88 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vl 88 (150)
+.++-++-.+...++.+++.|+.. ++.++ ..||-..+++...+++.......++|
T Consensus 105 ~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil 161 (243)
T PRK03692 105 GTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIV 161 (243)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 456666666677788888888654 56654 56777878777888888887666544
No 278
>PRK05320 rhodanese superfamily protein; Provisional
Probab=72.25 E-value=3.6 Score=29.68 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=32.3
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
+..++++||.+-..++..+..|...|+. +..+.||+.
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~ 211 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGIL 211 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHH
Confidence 5678999999999999999999999985 788899974
No 279
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=71.30 E-value=26 Score=23.01 Aligned_cols=46 Identities=20% Similarity=0.064 Sum_probs=32.4
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCC
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGD 67 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 67 (150)
.+...+.+....+.+++|-|.+.++.+.|-+.|=...-....-|+.
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~ 62 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNL 62 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccchhcccCCcc
Confidence 4555555555578999999999999999998885443344445553
No 280
>KOG0337|consensus
Probab=71.27 E-value=19 Score=28.22 Aligned_cols=84 Identities=19% Similarity=0.152 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcccc----CceEEEecCCCCHHHHHHHHHHhh--cCCceEEEEcC
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK----EYDVLLLHGDMDQSERNSVITKFK--RQECRILVATD 92 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~--~g~~~vlv~T~ 92 (150)
+..-+++.+......+-+++|-++|++-+......+++. +....++.|+-. +.++|. ++..++++||+
T Consensus 75 f~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~------~eeqf~~l~~npDii~ATp 148 (529)
T KOG0337|consen 75 FLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDS------IEEQFILLNENPDIIIATP 148 (529)
T ss_pred HHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccch------HHHHHHHhccCCCEEEecC
Confidence 444555566555455679999999999877666666543 334555555533 334443 23457888885
Q ss_pred ------CCcccCCccCCcEEEE
Q psy17637 93 ------VAARGLDIPHIRTVVN 108 (150)
Q Consensus 93 ------~~~~Gidi~~~~~vi~ 108 (150)
..++-+++..+.+|++
T Consensus 149 gr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 149 GRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred ceeeeeehheeccccceeeeee
Confidence 2344455667888885
No 281
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=71.21 E-value=35 Score=29.63 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=39.2
Q ss_pred CCeeEEehhhhhHHHHHhhcc----ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 35 PPALMNLAMQLNAEELANSLT----VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.+++|.++|++-+...++.+. ..++++..+.|+++..++.... ...|+++|+
T Consensus 136 ~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DIVygTP 191 (970)
T PRK12899 136 KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDVVYGTA 191 (970)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECC
Confidence 468888999887776666554 3478899999999988876443 268999995
No 282
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=70.65 E-value=14 Score=27.06 Aligned_cols=67 Identities=13% Similarity=0.033 Sum_probs=48.9
Q ss_pred CeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCc
Q psy17637 36 PALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIR 104 (150)
Q Consensus 36 ~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~ 104 (150)
--+|+|........|...+.... +...+|..-..+....++.....|+. |.+.+++..-++.-|+..
T Consensus 26 ~d~i~~EDTR~t~kLL~~~~I~~-~~~~~~~hn~~~~~~~l~~~l~~g~~-valvSDAG~P~ISDPG~~ 92 (276)
T TIGR00096 26 VDLFAEEDTRTSKLLLHLGIIAT-PKAFHIDNEFQEKQNLLAAKLEIGNN-IAVSSDAGPPLISDPGHL 92 (276)
T ss_pred CCEEEecCchhHHHHHHhcCCCC-ceEEEecccHhHHHHHHHHHHHcCCc-EEEEecCCCCCcCCccHH
Confidence 46899999999999988886542 34456655445566677777777764 888889888888887654
No 283
>PRK01415 hypothetical protein; Validated
Probab=70.47 E-value=6.2 Score=28.38 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=32.5
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
.+..++++||.+--.++..+..|...|++ +..+.||+.
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~ 207 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGIL 207 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHH
Confidence 45678999999988999999999999985 778899863
No 284
>KOG0346|consensus
Probab=70.28 E-value=13 Score=29.28 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhc-----cCCCCCeeEEehhhhhHHHHHhhccc------cCceEEEecCCCCHHHHHHHHHHhhcCCce
Q psy17637 18 EFAGHLVRNLEGA-----NQEVPPALMNLAMQLNAEELANSLTV------KEYDVLLLHGDMDQSERNSVITKFKRQECR 86 (150)
Q Consensus 18 ~~~~~ll~~l~~~-----~~~~~~~ivf~~~~~~~~~l~~~L~~------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 86 (150)
..+.-+++.+.+. .+....++|.++|++-|..++..+.. ..+.+.-+...|+..+.. .+-.+...
T Consensus 72 AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~----~~L~d~pd 147 (569)
T KOG0346|consen 72 AYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS----VALMDLPD 147 (569)
T ss_pred HHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH----HHHccCCC
Confidence 3444556666543 24467899999999988877776643 256666677777754444 55567778
Q ss_pred EEEEcC
Q psy17637 87 ILVATD 92 (150)
Q Consensus 87 vlv~T~ 92 (150)
|+|+|+
T Consensus 148 IvV~TP 153 (569)
T KOG0346|consen 148 IVVATP 153 (569)
T ss_pred eEEeCh
Confidence 999996
No 285
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=69.81 E-value=32 Score=25.63 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=36.6
Q ss_pred HHHHHHhccCCCCCeeEEeh-hhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhh
Q psy17637 23 LVRNLEGANQEVPPALMNLA-MQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81 (150)
Q Consensus 23 ll~~l~~~~~~~~~~ivf~~-~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 81 (150)
.++.+........++++||. +-..+...+..|...|+.+..+.|++.. -+......+.
T Consensus 63 ~i~~~~~~~~~~~~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~a-w~~~~~~~~~ 121 (311)
T TIGR03167 63 HVEQWRAFADGPPQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYKA-YRRFVIDQLE 121 (311)
T ss_pred HHHHHHhhcCCCCcEEEEECCCChHHHHHHHHHHHcCCCEEEecChHHH-HHHhhhhhhh
Confidence 34444333233445999994 5566777888888889888889998743 3444444443
No 286
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=69.01 E-value=40 Score=25.57 Aligned_cols=48 Identities=23% Similarity=0.209 Sum_probs=35.5
Q ss_pred CCCCeeEEeh-hhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhh
Q psy17637 33 EVPPALMNLA-MQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81 (150)
Q Consensus 33 ~~~~~ivf~~-~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 81 (150)
+..+++|||. +-..+..++..|...|+.+..+.||+.. -+...+..+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~a-wr~~~~~~~~ 135 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKA-YRRFVIDTLE 135 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHH-HHHhhHHHHh
Confidence 5678999994 5456777888888889888899999854 4555555554
No 287
>PRK00254 ski2-like helicase; Provisional
Probab=68.96 E-value=27 Score=29.11 Aligned_cols=68 Identities=24% Similarity=0.289 Sum_probs=45.5
Q ss_pred CCCCeeEEehhhhhHHHHHhhcc---ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----CCccc-CCccCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLT---VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-----VAARG-LDIPHI 103 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~---~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G-idi~~~ 103 (150)
...++|+.+++++-+.+.++.+. ..++++..++|+.+...+ + .+...|+|+|. .+..+ ..+.++
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~------~-~~~~~IiV~Tpe~~~~ll~~~~~~l~~l 139 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE------W-LGKYDIIIATAEKFDSLLRHGSSWIKDV 139 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh------h-hccCCEEEEcHHHHHHHHhCCchhhhcC
Confidence 45789999999998888876665 347889999999865321 1 14567999994 11111 234566
Q ss_pred cEEE
Q psy17637 104 RTVV 107 (150)
Q Consensus 104 ~~vi 107 (150)
.+||
T Consensus 140 ~lvV 143 (720)
T PRK00254 140 KLVV 143 (720)
T ss_pred CEEE
Confidence 6665
No 288
>KOG0334|consensus
Probab=68.62 E-value=14 Score=31.92 Aligned_cols=55 Identities=24% Similarity=0.248 Sum_probs=41.1
Q ss_pred CCCeeEEehhhhhHHHHHhhcc----ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 34 VPPALMNLAMQLNAEELANSLT----VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
++=+||-++|++.+..+.+.+. ..++.+.+.+|+...+ +-+...+.| ..|+|||.
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~---~qiaelkRg-~eIvV~tp 496 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGIS---QQIAELKRG-AEIVVCTP 496 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHH---HHHHHHhcC-CceEEecc
Confidence 4558999999998877766553 3588899999987654 445666777 78888885
No 289
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=68.39 E-value=57 Score=25.75 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=5.3
Q ss_pred hhHHHHhhccc
Q psy17637 115 IDTHTHRIGRT 125 (150)
Q Consensus 115 ~~~~~q~~GR~ 125 (150)
...++-|+|+.
T Consensus 292 l~~L~ERAg~~ 302 (444)
T PRK08972 292 LPALVERAGNG 302 (444)
T ss_pred hHHHHHHhcCC
Confidence 33444555553
No 290
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=67.32 E-value=5.7 Score=26.47 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=28.3
Q ss_pred CCCCCeeEEehhhh-hHHHHHhhccccCce-EEEecCCCC
Q psy17637 32 QEVPPALMNLAMQL-NAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~-~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
.+..++|+||.+-. .+...+..|...|++ +..+.|++.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~ 153 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTD 153 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHH
Confidence 36778999999753 455677777778876 677889863
No 291
>KOG0351|consensus
Probab=67.29 E-value=18 Score=31.21 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=46.3
Q ss_pred CeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC--CceEEEEc
Q psy17637 36 PALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ--ECRILVAT 91 (150)
Q Consensus 36 ~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv~T 91 (150)
-+||..+=..-.+-....|...++.+.+++++++..++..+++.+..| .+++|--|
T Consensus 306 itvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvt 363 (941)
T KOG0351|consen 306 VTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVT 363 (941)
T ss_pred ceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 456666666667767777777899999999999999999999999999 77888555
No 292
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=66.72 E-value=18 Score=23.97 Aligned_cols=90 Identities=11% Similarity=0.062 Sum_probs=49.5
Q ss_pred eeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCce
Q psy17637 7 VAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECR 86 (150)
Q Consensus 7 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 86 (150)
+.||....... ...+...+.+....+.+++|.|.+.+.++.|-+.|=...-....-|+-.... ......
T Consensus 4 v~FYhL~~~~~--~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~---------~~a~~P 72 (154)
T PRK06646 4 FSIYQTSDELL--LKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDP---------QPEKQP 72 (154)
T ss_pred eEEEEeCCChH--HHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCC---------CCCCCC
Confidence 44555544332 2244444444445689999999999999988888743333334445531110 012346
Q ss_pred EEEEcCCCcccCCccCCcEEEEecC
Q psy17637 87 ILVATDVAARGLDIPHIRTVVNYDL 111 (150)
Q Consensus 87 vlv~T~~~~~Gidi~~~~~vi~~~~ 111 (150)
|+++++.- +.+ ..+++||++.
T Consensus 73 V~L~~~~~--~p~--~~~vLiNL~~ 93 (154)
T PRK06646 73 IYITDELQ--NPN--NASVLVIISP 93 (154)
T ss_pred EEEecCCC--CCC--CCCEEEECCC
Confidence 88875321 112 4456777665
No 293
>PTZ00424 helicase 45; Provisional
Probab=66.60 E-value=55 Score=24.85 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=43.8
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc----CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCC------cccCCccC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK----EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVA------ARGLDIPH 102 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~------~~Gidi~~ 102 (150)
...++|+.+++++-+..+.+.+... +..+....|+....+. ...+..+ ..|+|+|.-. ...+.+.+
T Consensus 95 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~ 170 (401)
T PTZ00424 95 NACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDD---INKLKAG-VHMVVGTPGRVYDMIDKRHLRVDD 170 (401)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHH---HHHHcCC-CCEEEECcHHHHHHHHhCCccccc
Confidence 4567999999998877776655432 4456667777654332 2334433 5799999521 12344566
Q ss_pred CcEEE
Q psy17637 103 IRTVV 107 (150)
Q Consensus 103 ~~~vi 107 (150)
+.+||
T Consensus 171 i~lvV 175 (401)
T PTZ00424 171 LKLFI 175 (401)
T ss_pred ccEEE
Confidence 66665
No 294
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=66.48 E-value=34 Score=22.49 Aligned_cols=45 Identities=9% Similarity=-0.017 Sum_probs=33.3
Q ss_pred CeeEEehh-------hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHh
Q psy17637 36 PALMNLAM-------QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80 (150)
Q Consensus 36 ~~ivf~~~-------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 80 (150)
+++||+.+ -..+..+...|...++.+..+.=.|+++.++++.+..
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~ 52 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELL 52 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh
Confidence 35677765 6778888888888888877777777777777665544
No 295
>PRK01172 ski2-like helicase; Provisional
Probab=64.26 E-value=42 Score=27.73 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=36.7
Q ss_pred CCCCeeEEehhhhhHHHHHhhcc---ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLT---VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~---~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
...++|+.+++++-+.+.++.+. ..+..+...+|+.+.... .+ ....|+|+|.
T Consensus 64 ~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~-----~~--~~~dIiv~Tp 119 (674)
T PRK01172 64 AGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD-----FI--KRYDVVILTS 119 (674)
T ss_pred hCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh-----hh--ccCCEEEECH
Confidence 35689999999998888777664 347778888888654221 11 2357888885
No 296
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=64.11 E-value=13 Score=23.99 Aligned_cols=38 Identities=13% Similarity=0.003 Sum_probs=24.8
Q ss_pred CCCCCeeEEehh---hhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 32 QEVPPALMNLAM---QLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~---~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
.+..++|+||.+ -..+-.++-.|+..|++ +..+.|+++
T Consensus 93 ~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 93 DLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred CCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 356789999975 23344555566666664 678888753
No 297
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=64.06 E-value=4.9 Score=24.18 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=29.7
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEE-EecCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVL-LLHGDM 68 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~-~~~~~~ 68 (150)
...+++|+|.+-......+..|...|+... .+.|++
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~ 96 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGI 96 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcH
Confidence 567899999998888889999998888766 666765
No 298
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=63.08 E-value=56 Score=23.71 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=39.7
Q ss_pred CCCeeEEehhhhhHHHHHhhcccc--CceEEEec-CCCCHHHHHHHHHHhhcCCceEE
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVK--EYDVLLLH-GDMDQSERNSVITKFKRQECRIL 88 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~-~~~~~~~r~~~~~~f~~g~~~vl 88 (150)
..++-.+=.....++..+..|+.. ++.++..| |-.++.+.+.++++......++|
T Consensus 108 ~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil 165 (253)
T COG1922 108 GKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDIL 165 (253)
T ss_pred CceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEE
Confidence 455655566677788888888765 45666666 77888888888888887776655
No 299
>KOG0385|consensus
Probab=62.71 E-value=1e+02 Score=26.51 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=45.3
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhh---HHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc-CCceEEEEcC
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLN---AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR-QECRILVATD 92 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~ 92 (150)
.++..+.......+|.+|.|+---- ..++... ..++.+..+||+ +++|....+.+.. |.+.|+|+|-
T Consensus 205 s~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~rf--~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsY 275 (971)
T KOG0385|consen 205 SLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKRF--TPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSY 275 (971)
T ss_pred HHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHHh--CCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehH
Confidence 4455555543557889999975322 1222332 247889999998 7888888877654 6889999993
No 300
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=62.40 E-value=60 Score=23.87 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=25.9
Q ss_pred CCeeEEehh---hhhHHHHHhhccccC-c-eEEEe--cCCCCHHHHH-------HHHHHhhcC-CceEEEEcC
Q psy17637 35 PPALMNLAM---QLNAEELANSLTVKE-Y-DVLLL--HGDMDQSERN-------SVITKFKRQ-ECRILVATD 92 (150)
Q Consensus 35 ~~~ivf~~~---~~~~~~l~~~L~~~~-~-~~~~~--~~~~~~~~r~-------~~~~~f~~g-~~~vlv~T~ 92 (150)
..+.||+.- ..++.++.+.+...+ + +...+ .+..++-.|. .+-+.|++. ..+||+--+
T Consensus 101 ~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiAEyfrd~~g~~VLl~~D 173 (276)
T cd01135 101 NFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTAEYLAYEKGKHVLVILT 173 (276)
T ss_pred CCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhccCCeEEEEEc
Confidence 346677743 223334444444332 2 22222 3344555543 344566654 345554443
No 301
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=62.33 E-value=33 Score=23.16 Aligned_cols=45 Identities=24% Similarity=0.204 Sum_probs=30.4
Q ss_pred CCeeEEehh--------hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC
Q psy17637 35 PPALMNLAM--------QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ 83 (150)
Q Consensus 35 ~~~ivf~~~--------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 83 (150)
.+++|++|+ .+.++.+.+.| ++++ ..|+..-|....++++.|...
T Consensus 78 ~~v~IvSNsaGs~~d~~~~~a~~~~~~l---gIpv-l~h~~kKP~~~~~i~~~~~~~ 130 (168)
T PF09419_consen 78 DRVLIVSNSAGSSDDPDGERAEALEKAL---GIPV-LRHRAKKPGCFREILKYFKCQ 130 (168)
T ss_pred CeEEEEECCCCcccCccHHHHHHHHHhh---CCcE-EEeCCCCCccHHHHHHHHhhc
Confidence 369999997 56677777776 4543 345554456777888888643
No 302
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=61.94 E-value=8.4 Score=24.17 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=25.1
Q ss_pred CCCCCeeEEeh-hhhhHHHHHhhcccc------------Cc-eEEEecCCCC
Q psy17637 32 QEVPPALMNLA-MQLNAEELANSLTVK------------EY-DVLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~-~~~~~~~l~~~L~~~------------~~-~~~~~~~~~~ 69 (150)
.+..++++||. +-..+...+..|... |+ .+..+.||+.
T Consensus 66 ~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 66 KKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 35677999996 655555566666542 43 5778888864
No 303
>COG1204 Superfamily II helicase [General function prediction only]
Probab=61.38 E-value=49 Score=28.06 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=41.0
Q ss_pred CCCeeEEehhhhhHHHHHhhcc---ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 34 VPPALMNLAMQLNAEELANSLT---VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~---~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
+.++|--|+++.-+++.++.+. ..|+++..++|+++... + .-....|+|+|.
T Consensus 76 ~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~-~------~l~~~~ViVtT~ 130 (766)
T COG1204 76 GGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDD-E------RLARYDVIVTTP 130 (766)
T ss_pred CCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccch-h------hhccCCEEEEch
Confidence 5789999999999999998888 66999999999976322 1 114568999994
No 304
>KOG0342|consensus
Probab=61.24 E-value=34 Score=27.30 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=35.5
Q ss_pred CCCCCeeEEehhhhhHHHHHhhc----ccc-CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSL----TVK-EYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L----~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.+.-.+||.|+|++-+-..+..+ ..+ ++.+..+-||... ..-.++... .+++||||+
T Consensus 152 r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~---~~e~~kl~k-~~niliATP 213 (543)
T KOG0342|consen 152 RNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNF---SVEADKLVK-GCNILIATP 213 (543)
T ss_pred CCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccc---hHHHHHhhc-cccEEEeCC
Confidence 34566999999998654433332 333 5667777777543 222334444 578999995
No 305
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=61.19 E-value=85 Score=25.24 Aligned_cols=11 Identities=9% Similarity=0.036 Sum_probs=7.1
Q ss_pred hhHHHHhhccc
Q psy17637 115 IDTHTHRIGRT 125 (150)
Q Consensus 115 ~~~~~q~~GR~ 125 (150)
...++.|+|+.
T Consensus 294 ~s~LlERag~~ 304 (502)
T PRK09281 294 HSRLLERAAKL 304 (502)
T ss_pred hHHHHHHhhhc
Confidence 45566777774
No 306
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=60.77 E-value=83 Score=24.97 Aligned_cols=12 Identities=33% Similarity=0.412 Sum_probs=6.7
Q ss_pred hhHHHHhhcccc
Q psy17637 115 IDTHTHRIGRTG 126 (150)
Q Consensus 115 ~~~~~q~~GR~~ 126 (150)
...++-|+|+..
T Consensus 280 l~~LlERaG~~~ 291 (460)
T PRK04196 280 LATIYERAGRIK 291 (460)
T ss_pred hHHHHHHhhcCC
Confidence 445556666643
No 307
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=60.52 E-value=84 Score=24.94 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=7.3
Q ss_pred hhHHHHhhccc
Q psy17637 115 IDTHTHRIGRT 125 (150)
Q Consensus 115 ~~~~~q~~GR~ 125 (150)
...++.|+|+.
T Consensus 305 l~~l~ERag~~ 315 (455)
T PRK07960 305 LPALVERAGNG 315 (455)
T ss_pred hhHHHHHHhcC
Confidence 55566777774
No 308
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=59.89 E-value=82 Score=24.60 Aligned_cols=8 Identities=25% Similarity=0.173 Sum_probs=3.8
Q ss_pred CCCCHHHH
Q psy17637 66 GDMDQSER 73 (150)
Q Consensus 66 ~~~~~~~r 73 (150)
++.++-.|
T Consensus 201 sd~~~~~r 208 (411)
T TIGR03496 201 ADESPLMR 208 (411)
T ss_pred CCCCHHHH
Confidence 44445444
No 309
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=59.88 E-value=7.7 Score=28.90 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=31.8
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
+..++++||.+--.++..+.+|...|++ +..+.||+.
T Consensus 170 kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~ 207 (314)
T PRK00142 170 KDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGII 207 (314)
T ss_pred CcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHH
Confidence 5678999999988888889999888885 888999974
No 310
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=59.43 E-value=89 Score=24.87 Aligned_cols=10 Identities=10% Similarity=-0.027 Sum_probs=5.2
Q ss_pred cCCCCHHHHH
Q psy17637 65 HGDMDQSERN 74 (150)
Q Consensus 65 ~~~~~~~~r~ 74 (150)
++++++-.|.
T Consensus 210 tsd~p~~~r~ 219 (463)
T PRK09280 210 QMNEPPGARL 219 (463)
T ss_pred CCCCCHHHHH
Confidence 4455555553
No 311
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=59.31 E-value=59 Score=22.80 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=32.8
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHh
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 80 (150)
...+.||++. ..+++.+.+...++.+.-+||..+++.-..+-...
T Consensus 53 ~~~VgVf~n~--~~~~i~~i~~~~~ld~VQlHG~e~~~~~~~l~~~~ 97 (208)
T COG0135 53 VKVVGVFVNE--SIEEILEIAEELGLDAVQLHGDEDPEYIDQLKEEL 97 (208)
T ss_pred CCEEEEECCC--CHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc
Confidence 3467788876 45566666666678899999999987777666554
No 312
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=58.84 E-value=18 Score=27.00 Aligned_cols=38 Identities=18% Similarity=0.090 Sum_probs=28.7
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
.+..++|+||++-..+-.++-.|...|++ +..|.|++.
T Consensus 267 ~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~ 305 (320)
T PLN02723 267 SLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWT 305 (320)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH
Confidence 35678999999876676777777777875 778888853
No 313
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=58.74 E-value=16 Score=26.63 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=29.6
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
.+..++|+||++-..+..++..|...|++ +..|.|++.
T Consensus 229 ~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~ 267 (281)
T PRK11493 229 SFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWS 267 (281)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHH
Confidence 35678999999877777778888777875 778888853
No 314
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=58.15 E-value=89 Score=24.48 Aligned_cols=10 Identities=20% Similarity=0.292 Sum_probs=5.4
Q ss_pred hhHHHHhhcc
Q psy17637 115 IDTHTHRIGR 124 (150)
Q Consensus 115 ~~~~~q~~GR 124 (150)
...++.|+|+
T Consensus 270 l~~L~ERag~ 279 (418)
T TIGR03498 270 LPRLLERAGP 279 (418)
T ss_pred hhHHHHHhcc
Confidence 4445556665
No 315
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=56.75 E-value=18 Score=23.26 Aligned_cols=56 Identities=25% Similarity=0.255 Sum_probs=29.6
Q ss_pred eeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccC
Q psy17637 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGL 98 (150)
Q Consensus 37 ~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 98 (150)
-.|++...+..+.+...+...+..+..++|. +.+.+.....+.+++|+--....|+
T Consensus 49 ~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~------~~l~~~~~~~~~D~vv~Ai~G~aGL 104 (129)
T PF02670_consen 49 KYVVIADEEAYEELKKALPSKGPGIEVLSGP------EGLEELAEEPEVDIVVNAIVGFAGL 104 (129)
T ss_dssp SEEEESSHHHHHHHHHHHHHTTSSSEEEESH------HHHHHHHTHTT-SEEEE--SSGGGH
T ss_pred CEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh------HHHHHHhcCCCCCEEEEeCcccchH
Confidence 3466666666777777765555556666664 3333344445556665554444443
No 316
>KOG0343|consensus
Probab=56.69 E-value=15 Score=29.93 Aligned_cols=69 Identities=19% Similarity=0.126 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhccC---CCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 19 FAGHLVRNLEGANQ---EVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 19 ~~~~ll~~l~~~~~---~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
++.-+++.|....+ .+--+||.++|++-+-...+.|.. +.+.+..+-||..-+ .+.-+-...+|||||
T Consensus 123 FlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k-----~E~eRi~~mNILVCT 197 (758)
T KOG0343|consen 123 FLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK-----FELERISQMNILVCT 197 (758)
T ss_pred ehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH-----HHHHhhhcCCeEEec
Confidence 44455666655433 356699999999998888888864 355677777885422 122233567899999
Q ss_pred C
Q psy17637 92 D 92 (150)
Q Consensus 92 ~ 92 (150)
+
T Consensus 198 P 198 (758)
T KOG0343|consen 198 P 198 (758)
T ss_pred h
Confidence 5
No 317
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=56.41 E-value=78 Score=23.26 Aligned_cols=64 Identities=8% Similarity=-0.000 Sum_probs=28.6
Q ss_pred HHHHHhccCCCCCeeEEeh---hhhhHHHHHhhccccCc----eEEEecCCCCHHHH-------HHHHHHhhcCCceEE
Q psy17637 24 VRNLEGANQEVPPALMNLA---MQLNAEELANSLTVKEY----DVLLLHGDMDQSER-------NSVITKFKRQECRIL 88 (150)
Q Consensus 24 l~~l~~~~~~~~~~ivf~~---~~~~~~~l~~~L~~~~~----~~~~~~~~~~~~~r-------~~~~~~f~~g~~~vl 88 (150)
++.+.+. ....-.+||+- ..+++.++.+.+...+. -+..-..+.++..| ..+-+.|++...+||
T Consensus 87 l~~i~~~-~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G~~Vl 164 (274)
T cd01132 87 IDTIINQ-KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHAL 164 (274)
T ss_pred HHHHHHh-cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 3444443 22223336663 23445555555554331 13333445556555 334455655333444
No 318
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=55.83 E-value=79 Score=23.20 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=4.9
Q ss_pred hhHHHHhhcc
Q psy17637 115 IDTHTHRIGR 124 (150)
Q Consensus 115 ~~~~~q~~GR 124 (150)
...+..|+|+
T Consensus 203 ~~~l~ERag~ 212 (274)
T cd01133 203 MGALQERITS 212 (274)
T ss_pred HHHHHHHhcC
Confidence 3444455554
No 319
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=55.80 E-value=1e+02 Score=24.48 Aligned_cols=11 Identities=36% Similarity=0.501 Sum_probs=5.9
Q ss_pred hhHHHHhhccc
Q psy17637 115 IDTHTHRIGRT 125 (150)
Q Consensus 115 ~~~~~q~~GR~ 125 (150)
...++-|+|+.
T Consensus 278 l~~LlERaG~~ 288 (458)
T TIGR01041 278 LATIYERAGRV 288 (458)
T ss_pred hHHHHHhcccC
Confidence 44445566664
No 320
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=55.18 E-value=1e+02 Score=25.69 Aligned_cols=89 Identities=15% Similarity=0.163 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccC
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGL 98 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 98 (150)
....++..+... ......|.|.+...|..+...|++.. ......+.-+.|..|+.-+. .-...|+
T Consensus 642 r~~~ii~~mkk~--~~etiaVi~kt~~d~~~~~d~lre~~----------~~r~I~k~nq~f~~~~~vip---vy~aKGl 706 (747)
T COG3973 642 RNPDIIPRMKKR--GSETIAVICKTDHDCKAVMDSLREKD----------SQRTIAKENQRFHHGSDVIP---VYDAKGL 706 (747)
T ss_pred hhHHHHHHHHhc--CCCceEEECCcHHHHHHHHHHHhhcc----------hhhHHHhhcccccCCceEEE---eeecccc
Confidence 444555555554 56778889999999998888887543 12222333345655553222 2344577
Q ss_pred CccCCcEEEEecC------CCChhHHHHhhccc
Q psy17637 99 DIPHIRTVVNYDL------ARDIDTHTHRIGRT 125 (150)
Q Consensus 99 di~~~~~vi~~~~------~~~~~~~~q~~GR~ 125 (150)
.+ ++||.+|+ +.....+.-++-||
T Consensus 707 EF---D~viv~d~s~~e~te~~~r~LYva~TRA 736 (747)
T COG3973 707 EF---DHVIVVDPSIVEETEQDLRDLYVAVTRA 736 (747)
T ss_pred ee---eeEEEecchhhcccccchhhHHHHHHHH
Confidence 66 56776666 33444444455554
No 321
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.27 E-value=29 Score=22.28 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=8.8
Q ss_pred cccCCccCCcEEE
Q psy17637 95 ARGLDIPHIRTVV 107 (150)
Q Consensus 95 ~~Gidi~~~~~vi 107 (150)
-+++|+...++||
T Consensus 86 lmaldis~ADlvI 98 (156)
T COG4019 86 LMALDISKADLVI 98 (156)
T ss_pred HHhccccCCcEEE
Confidence 4567777777766
No 322
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=54.06 E-value=64 Score=24.85 Aligned_cols=99 Identities=17% Similarity=0.081 Sum_probs=60.3
Q ss_pred cchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcccc--CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 14 DKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK--EYDVLLLHGDMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 14 ~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
....+.+-+.++... +.+..+.|-++..+.|-+|+..|+.. +..+..+||+.++ .|+ ..++|+|
T Consensus 127 aGKTEMif~~i~~al---~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~--------~fr---~plvVaT 192 (441)
T COG4098 127 AGKTEMIFQGIEQAL---NQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDS--------YFR---APLVVAT 192 (441)
T ss_pred CCchhhhHHHHHHHH---hcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCch--------hcc---ccEEEEe
Confidence 333443334444443 35788888999999999999999764 5678899998664 344 3566776
Q ss_pred C-CCcccCCccCCcEEEE---ecCCCChhHHHHhhccccCC
Q psy17637 92 D-VAARGLDIPHIRTVVN---YDLARDIDTHTHRIGRTGRA 128 (150)
Q Consensus 92 ~-~~~~Gidi~~~~~vi~---~~~~~~~~~~~q~~GR~~R~ 128 (150)
. -+-+- -...+++|. =.+|.+-+..+|..-+-.|.
T Consensus 193 tHQLlrF--k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark 231 (441)
T COG4098 193 THQLLRF--KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARK 231 (441)
T ss_pred hHHHHHH--HhhccEEEEeccccccccCCHHHHHHHHHhhc
Confidence 3 22110 123344432 23577777777776555554
No 323
>PRK06936 type III secretion system ATPase; Provisional
Probab=53.53 E-value=1.1e+02 Score=24.17 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=32.2
Q ss_pred HHHHHHHhccCCCCCeeEEehh----hhhHHHHHhhccccCce---EEEecCCCCHHHHH-------HHHHHhhcCCceE
Q psy17637 22 HLVRNLEGANQEVPPALMNLAM----QLNAEELANSLTVKEYD---VLLLHGDMDQSERN-------SVITKFKRQECRI 87 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~----~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~r~-------~~~~~f~~g~~~v 87 (150)
.++..+... ....++||+-- ++..+.+...|...+++ ++.-+++.++-.|. .+-+.|++...+|
T Consensus 177 tLl~~Ia~~--~~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~V 254 (439)
T PRK06936 177 TLLASLIRS--AEVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRV 254 (439)
T ss_pred HHHHHHhcC--CCCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 455555554 22345666633 33333333444433322 33344556666663 3445565543455
Q ss_pred EEEcC
Q psy17637 88 LVATD 92 (150)
Q Consensus 88 lv~T~ 92 (150)
|+--+
T Consensus 255 ll~~D 259 (439)
T PRK06936 255 LLLMD 259 (439)
T ss_pred EEecc
Confidence 54443
No 324
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=53.36 E-value=40 Score=20.44 Aligned_cols=36 Identities=11% Similarity=0.312 Sum_probs=30.1
Q ss_pred hHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhh
Q psy17637 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81 (150)
Q Consensus 46 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 81 (150)
.++++.+.....+.....++..++|.+...+.+.+.
T Consensus 45 K~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 45 KVEEIKELIEELDADLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred HHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC
Confidence 367777777778889999999999999998888874
No 325
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=53.16 E-value=25 Score=23.25 Aligned_cols=29 Identities=21% Similarity=0.106 Sum_probs=22.7
Q ss_pred ccCCCCCeeEEehhhhhHHHHHhhccccC
Q psy17637 30 ANQEVPPALMNLAMQLNAEELANSLTVKE 58 (150)
Q Consensus 30 ~~~~~~~~ivf~~~~~~~~~l~~~L~~~~ 58 (150)
......++||-.+|+-.++++.+.|+...
T Consensus 29 ~i~~~~rvLvL~PTRvva~em~~aL~~~~ 57 (148)
T PF07652_consen 29 AIKRRLRVLVLAPTRVVAEEMYEALKGLP 57 (148)
T ss_dssp HHHTT--EEEEESSHHHHHHHHHHTTTSS
T ss_pred HHHccCeEEEecccHHHHHHHHHHHhcCC
Confidence 33467899999999999999999998554
No 326
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=52.55 E-value=14 Score=23.37 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=26.6
Q ss_pred CCCCeeEEehhhhh---------HHHHHhhccc---cCceEEEecCCCC
Q psy17637 33 EVPPALMNLAMQLN---------AEELANSLTV---KEYDVLLLHGDMD 69 (150)
Q Consensus 33 ~~~~~ivf~~~~~~---------~~~l~~~L~~---~~~~~~~~~~~~~ 69 (150)
...++|||+.+-.. +..+++.|.. .+.++..+.||+.
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~ 122 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFE 122 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHH
Confidence 46789999976554 5667777765 4567889999863
No 327
>PF13245 AAA_19: Part of AAA domain
Probab=52.47 E-value=34 Score=19.57 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=19.5
Q ss_pred CCCeeEEehhhhhHHHHHhhc
Q psy17637 34 VPPALMNLAMQLNAEELANSL 54 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L 54 (150)
..++++.+.++..++.+.+.|
T Consensus 42 ~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 42 GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCHHHHHHHHHHH
Confidence 778999999999999999998
No 328
>KOG0336|consensus
Probab=52.11 E-value=82 Score=24.93 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=44.7
Q ss_pred CCCCCeeEEehhhhhHHHHHh---hccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCC------cccCCccC
Q psy17637 32 QEVPPALMNLAMQLNAEELAN---SLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVA------ARGLDIPH 102 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~---~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~------~~Gidi~~ 102 (150)
..+..+||+++|++-+-.+.. +....|++..+++|+-...+.. +..+.| +.++++|+-- .--+++..
T Consensus 292 r~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqi---e~lkrg-veiiiatPgrlndL~~~n~i~l~s 367 (629)
T KOG0336|consen 292 RNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQI---EDLKRG-VEIIIATPGRLNDLQMDNVINLAS 367 (629)
T ss_pred cCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHH---HHHhcC-ceEEeeCCchHhhhhhcCeeeeee
Confidence 456789999999886554433 3344688888899887654443 344433 5788888521 12244555
Q ss_pred CcEEE
Q psy17637 103 IRTVV 107 (150)
Q Consensus 103 ~~~vi 107 (150)
+++++
T Consensus 368 iTYlV 372 (629)
T KOG0336|consen 368 ITYLV 372 (629)
T ss_pred eEEEE
Confidence 55555
No 329
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=51.93 E-value=89 Score=22.61 Aligned_cols=57 Identities=4% Similarity=0.068 Sum_probs=39.6
Q ss_pred CeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 36 PALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 36 ~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.++|-|...+....+.....+.+..+.+-+.+++.++.+++.+.-+.....++++.+
T Consensus 70 DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~N 126 (266)
T TIGR00036 70 DVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPN 126 (266)
T ss_pred CEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECc
Confidence 455555555666666666667788888777788888888887776666567777553
No 330
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=51.91 E-value=53 Score=19.99 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=21.0
Q ss_pred CCCeeEEehh-----hhhHHHHHhhccccCc---eEEEecCCCC
Q psy17637 34 VPPALMNLAM-----QLNAEELANSLTVKEY---DVLLLHGDMD 69 (150)
Q Consensus 34 ~~~~ivf~~~-----~~~~~~l~~~L~~~~~---~~~~~~~~~~ 69 (150)
..++|+||.+ ...+..+...|...|+ .+..+.|++.
T Consensus 66 ~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~ 109 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIK 109 (113)
T ss_pred CCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhh
Confidence 4568888864 1234455555555554 4566677753
No 331
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=51.30 E-value=52 Score=19.70 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=31.2
Q ss_pred hhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhh
Q psy17637 43 MQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81 (150)
Q Consensus 43 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 81 (150)
+++.+..+...|...++..-.+.=.++++.|..+.+...
T Consensus 15 ~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~ 53 (92)
T cd03030 15 IKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVP 53 (92)
T ss_pred HHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcC
Confidence 467788899999988888888887788888887776653
No 332
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=51.24 E-value=1.3e+02 Score=24.19 Aligned_cols=11 Identities=9% Similarity=0.036 Sum_probs=6.5
Q ss_pred hhHHHHhhccc
Q psy17637 115 IDTHTHRIGRT 125 (150)
Q Consensus 115 ~~~~~q~~GR~ 125 (150)
...++.|+|+.
T Consensus 273 ~srLlERag~~ 283 (485)
T CHL00059 273 HSRLLERAAKL 283 (485)
T ss_pred hHHHHHhhhcc
Confidence 44556677765
No 333
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=50.76 E-value=43 Score=18.59 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=35.0
Q ss_pred eeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCccc
Q psy17637 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97 (150)
Q Consensus 37 ~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 97 (150)
.++.|.....+..+.+.... +..+....|..........+..+... ..|+++++.-..|
T Consensus 2 ~l~ivEg~~da~~~~~~~~~-~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G 60 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGF-GGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREG 60 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCC-CEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhH
Confidence 46777777777777776542 23445555554444555555665443 5688887655444
No 334
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=50.76 E-value=14 Score=27.96 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=30.1
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
+..++++||.+-..+...+..|...|++ +..+.|++.
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~ 350 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIE 350 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHH
Confidence 4567999999988888888889888886 677888863
No 335
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=49.94 E-value=34 Score=21.09 Aligned_cols=48 Identities=2% Similarity=0.047 Sum_probs=23.5
Q ss_pred hhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEE
Q psy17637 42 AMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILV 89 (150)
Q Consensus 42 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 89 (150)
...+.++.+.+.|...++.+.+++..+-..-....++.++++..+.+|
T Consensus 29 ~~~e~~~~~~~~l~~~~~gII~iTE~~a~~i~~~~i~~~~~~~~P~II 76 (104)
T PRK01189 29 EGKDLVKKFLEIFNNPKCKYIFVSESTKNMFDKNTLRSLESSSKPLVV 76 (104)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEEHHHHhhCCHHHHHHHhccCCCeEE
Confidence 334444555555555555556665554333333444455544444443
No 336
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=49.73 E-value=1.3e+02 Score=23.78 Aligned_cols=10 Identities=20% Similarity=0.272 Sum_probs=6.2
Q ss_pred hhHHHHhhcc
Q psy17637 115 IDTHTHRIGR 124 (150)
Q Consensus 115 ~~~~~q~~GR 124 (150)
...++.|+|+
T Consensus 285 l~~l~ERag~ 294 (433)
T PRK07594 285 LPRLLERTGM 294 (433)
T ss_pred hHHHHHhhcC
Confidence 4555667775
No 337
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=49.66 E-value=53 Score=22.35 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=33.1
Q ss_pred EeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcc
Q psy17637 11 LVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLT 55 (150)
Q Consensus 11 ~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~ 55 (150)
..-....+....++..+......+.++++.++.....+.+...|.
T Consensus 24 ~~Y~~~~e~~~~~~~Fi~~GL~~ge~~l~v~~~~~~~~~l~~~L~ 68 (191)
T PF14417_consen 24 AFYDDEEELLEVLVPFIREGLARGERCLYVAPDPRRVEELRDELR 68 (191)
T ss_pred EEECCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHH
Confidence 344455667778888888877888899999885666777777774
No 338
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=49.30 E-value=41 Score=21.43 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=28.0
Q ss_pred HHHHHHhhcCCceEEEEcCCCcccCCcc------CCcEEEEecC
Q psy17637 74 NSVITKFKRQECRILVATDVAARGLDIP------HIRTVVNYDL 111 (150)
Q Consensus 74 ~~~~~~f~~g~~~vlv~T~~~~~Gidi~------~~~~vi~~~~ 111 (150)
.+++....+|++.+.|-|.-=.-++|++ .-.+||+||-
T Consensus 64 ~emi~~l~~geIel~VLttqpDIai~l~~kVldnEnRYViDFD~ 107 (144)
T PF10657_consen 64 PEMIDKLISGEIELFVLTTQPDIAINLQQKVLDNENRYVIDFDK 107 (144)
T ss_pred HHHHHHHhcCceEEEEEccCCCeeechhhhhhcccceEEEeccC
Confidence 5788899999999988886555566653 2357888874
No 339
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=49.19 E-value=1.3e+02 Score=23.83 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=8.4
Q ss_pred HHhhccccCceEEEecCCCC
Q psy17637 50 LANSLTVKEYDVLLLHGDMD 69 (150)
Q Consensus 50 l~~~L~~~~~~~~~~~~~~~ 69 (150)
++++|...|..+..+--.++
T Consensus 249 iAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 249 IAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHCCCCEEEEecchh
Confidence 34444444444444444443
No 340
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=49.17 E-value=1.3e+02 Score=25.62 Aligned_cols=55 Identities=18% Similarity=0.115 Sum_probs=36.1
Q ss_pred CCCCCeeEEehhhhhHHHHHhhc----cccCceEEEecCC-----CCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSL----TVKEYDVLLLHGD-----MDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L----~~~~~~~~~~~~~-----~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
..+..++|.++++.-+...++.+ ...|+++...+++ +.++++... ....|+++|+
T Consensus 109 L~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~------y~~dIvygTp 172 (762)
T TIGR03714 109 LTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKI------YNSDIVYTTN 172 (762)
T ss_pred hcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHh------CCCCEEEECc
Confidence 35668999999987766555554 4558888776654 555454433 2367888884
No 341
>PHA03371 circ protein; Provisional
Probab=48.73 E-value=22 Score=25.22 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=18.0
Q ss_pred ChhHHHHhhccccCCCCccEEEEEEe
Q psy17637 114 DIDTHTHRIGRTGRAGNKGVAYTLVT 139 (150)
Q Consensus 114 ~~~~~~q~~GR~~R~g~~~~~~~~~~ 139 (150)
+--.|+|.+|||.-.|...+.+++..
T Consensus 64 ~r~~~v~fIGRAya~g~~RkF~iyl~ 89 (240)
T PHA03371 64 SRLAYVKFIGRAYAIGSGRKFVIYLS 89 (240)
T ss_pred CcceeeeeeehhhccCCCceEEEEEc
Confidence 56677899999998885444444443
No 342
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=48.72 E-value=55 Score=21.40 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=40.2
Q ss_pred eeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc-CCceEEEEc
Q psy17637 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR-QECRILVAT 91 (150)
Q Consensus 37 ~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T 91 (150)
+=||..|-+.--.+.+.+...|+++..+..+-.++.+.+++..++. ++..+.|++
T Consensus 46 V~i~IASgDr~gsl~~lae~~gi~~~rv~a~a~~e~K~~ii~eLkk~~~k~vmVGn 101 (152)
T COG4087 46 VDIYIASGDRKGSLVQLAEFVGIPVERVFAGADPEMKAKIIRELKKRYEKVVMVGN 101 (152)
T ss_pred heEEEecCCcchHHHHHHHHcCCceeeeecccCHHHHHHHHHHhcCCCcEEEEecC
Confidence 4466666555555556555668888888888889999999999984 455666766
No 343
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=48.36 E-value=1.4e+02 Score=26.14 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=55.2
Q ss_pred CCcCeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhh-hHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhh
Q psy17637 3 GNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQL-NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81 (150)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~-~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 81 (150)
++.|+.+...-+.....+-.+...+... +..+.++|+-.+. --+.+.+.+...+.....-....+.++-.+. ..
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~---l~ 347 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKEL---LE 347 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHH---Hh
Confidence 3556777766666655566666777666 5555666665544 4445666665443221111123333333333 33
Q ss_pred cCCceEEEEc-CCCcccC------CccCCcEEEEecCC
Q psy17637 82 RQECRILVAT-DVAARGL------DIPHIRTVVNYDLA 112 (150)
Q Consensus 82 ~g~~~vlv~T-~~~~~Gi------di~~~~~vi~~~~~ 112 (150)
.+...|+|+| +.+..-+ ...+-++|+..|=.
T Consensus 348 ~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEa 385 (962)
T COG0610 348 DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEA 385 (962)
T ss_pred cCCCcEEEEEecccchhhhcccccccCCCcEEEEEech
Confidence 3455788888 5554332 23455566655543
No 344
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=48.25 E-value=1.4e+02 Score=24.92 Aligned_cols=89 Identities=20% Similarity=0.135 Sum_probs=55.3
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc--CceEEEe--------------------c-----CCCCHHHHHHHHHHhhcCCc
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK--EYDVLLL--------------------H-----GDMDQSERNSVITKFKRQEC 85 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~--------------------~-----~~~~~~~r~~~~~~f~~g~~ 85 (150)
...++||.++++..+..++..|+.- ...+..+ + ..--...|..++..+..+..
T Consensus 53 ~~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~~~i~~~R~~al~~L~~~~~ 132 (655)
T TIGR00631 53 VNRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASINDEIERLRHSATRSLLERRD 132 (655)
T ss_pred hCCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCChHHHHHHHHHHHHHHhCCC
Confidence 3568999999999999998888543 1112222 1 11123356777888777777
Q ss_pred eEEEEcCCCcccCCccC----CcEEEEecCCCChhHHHHh
Q psy17637 86 RILVATDVAARGLDIPH----IRTVVNYDLARDIDTHTHR 121 (150)
Q Consensus 86 ~vlv~T~~~~~Gidi~~----~~~vi~~~~~~~~~~~~q~ 121 (150)
.|+|+|-.+-.|+--|. ..+.+..+-..+...+...
T Consensus 133 ~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~ 172 (655)
T TIGR00631 133 VIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRR 172 (655)
T ss_pred eEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHH
Confidence 78888843466665443 3445555555666666543
No 345
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=48.15 E-value=1.2e+02 Score=23.18 Aligned_cols=68 Identities=9% Similarity=0.141 Sum_probs=42.8
Q ss_pred HHHHHHHhccCCCCCeeEEehh----hhhHHHHHhhccccCceEEEecC---CCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 22 HLVRNLEGANQEVPPALMNLAM----QLNAEELANSLTVKEYDVLLLHG---DMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~----~~~~~~l~~~L~~~~~~~~~~~~---~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
.+-+.+... ..++++|.+.. ....+.+.+.|...++.+..+.+ ..+.+.-.+..+.++....+++|+-
T Consensus 21 ~l~~~~~~~--g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~Iiai 95 (383)
T PRK09860 21 DAMNMMADY--GFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISL 95 (383)
T ss_pred HHHHHHHhc--CCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEe
Confidence 454555443 33466666543 12466788888777777655555 3456666777788887777777765
No 346
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=48.08 E-value=13 Score=22.16 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=22.5
Q ss_pred hhccccCceEE----EecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 52 NSLTVKEYDVL----LLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 52 ~~L~~~~~~~~----~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
+.|.+.|+++. ..+.+-.+..+.++++.+++|++.++|.|.
T Consensus 24 ~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~ 68 (95)
T PF02142_consen 24 KFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTP 68 (95)
T ss_dssp HHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE-
T ss_pred HHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeC
Confidence 44556677622 222221333345689999999887777663
No 347
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=47.87 E-value=1.6e+02 Score=24.47 Aligned_cols=88 Identities=19% Similarity=0.178 Sum_probs=54.4
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc--CceEEEe--------------------cCC--CC---HHHHHHHHHHhhcCCc
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK--EYDVLLL--------------------HGD--MD---QSERNSVITKFKRQEC 85 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~--------------------~~~--~~---~~~r~~~~~~f~~g~~ 85 (150)
...++||.+++...++.++..|... ...+..+ +.. .+ ...|..++..+..++.
T Consensus 56 ~~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~~~~~~R~~~l~~L~~~~~ 135 (652)
T PRK05298 56 LQRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEIERLRHSATKSLLERRD 135 (652)
T ss_pred hCCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCChHHHHHHHHHHHHHHhCCC
Confidence 3568999999999999998887543 1112222 111 11 3356788888887776
Q ss_pred eEEEEc-CCCcccCCccC----CcEEEEecCCCChhHHHHh
Q psy17637 86 RILVAT-DVAARGLDIPH----IRTVVNYDLARDIDTHTHR 121 (150)
Q Consensus 86 ~vlv~T-~~~~~Gidi~~----~~~vi~~~~~~~~~~~~q~ 121 (150)
.|+|+| .++ .++--|. ....+..+-..+...+...
T Consensus 136 ~ivv~s~~al-~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~ 175 (652)
T PRK05298 136 VIVVASVSCI-YGLGSPEEYLKMVLSLRVGQEIDRRELLRR 175 (652)
T ss_pred EEEEEcHHHh-cCCCCHHHHHhceEEEeCCCCcCHHHHHHH
Confidence 788887 444 6655442 3345555666666666543
No 348
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=47.39 E-value=77 Score=20.56 Aligned_cols=54 Identities=26% Similarity=0.211 Sum_probs=33.4
Q ss_pred CCCeeEEehhhhhHHHHHhhccccC-----ceEEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKE-----YDVLLLHGDMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
..++++.+++...+......+.... .....+++... ...+..+..+...++++|
T Consensus 54 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t 112 (201)
T smart00487 54 GKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILVTT 112 (201)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEEeC
Confidence 4689999998777776666555332 34445555433 233444555555888888
No 349
>PLN02363 phosphoribosylanthranilate isomerase
Probab=46.96 E-value=77 Score=22.96 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=27.8
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHH
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSER 73 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 73 (150)
..++.||++. ..+++.+.+...++.+.-+||..+++.-
T Consensus 100 ~~~VgVfv~~--~~~~I~~~~~~~~ld~VQLHG~e~~~~~ 137 (256)
T PLN02363 100 AKPVGVFVDD--DANTILRAADSSDLELVQLHGNGSRAAF 137 (256)
T ss_pred ccEEEEEeCC--CHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 3468888776 4556667666778889999998876543
No 350
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=46.79 E-value=1.4e+02 Score=23.56 Aligned_cols=68 Identities=16% Similarity=0.108 Sum_probs=30.1
Q ss_pred HHHHHHHhccCCCCCeeEEehh----hhhHHHHHhhccccCce---EEEecCCCCHHHHH-------HHHHHhhcCCceE
Q psy17637 22 HLVRNLEGANQEVPPALMNLAM----QLNAEELANSLTVKEYD---VLLLHGDMDQSERN-------SVITKFKRQECRI 87 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~----~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~r~-------~~~~~f~~g~~~v 87 (150)
.|+..+... ....++||+-- ++..+.+.+.|...+++ ++.-.++.++-.|. .+-+.|++...+|
T Consensus 173 tLL~~I~~~--~~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEyfrd~G~~V 250 (442)
T PRK08927 173 VLLSMLARN--ADADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDV 250 (442)
T ss_pred HHHHHHHhc--cCCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcE
Confidence 445555544 22235555522 23223333444444332 23333455666663 3445565433455
Q ss_pred EEEc
Q psy17637 88 LVAT 91 (150)
Q Consensus 88 lv~T 91 (150)
|+--
T Consensus 251 ll~~ 254 (442)
T PRK08927 251 LCLM 254 (442)
T ss_pred EEEE
Confidence 5443
No 351
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=46.34 E-value=84 Score=23.31 Aligned_cols=10 Identities=30% Similarity=0.388 Sum_probs=4.4
Q ss_pred HHHHHHHHHh
Q psy17637 20 AGHLVRNLEG 29 (150)
Q Consensus 20 ~~~ll~~l~~ 29 (150)
+..+++.+..
T Consensus 31 l~~lv~~li~ 40 (309)
T cd00952 31 TARLVERLIA 40 (309)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 352
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=45.53 E-value=1.5e+02 Score=23.49 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=13.2
Q ss_pred cCCCCHHHHH-------HHHHHhhc-CCceEEEEc
Q psy17637 65 HGDMDQSERN-------SVITKFKR-QECRILVAT 91 (150)
Q Consensus 65 ~~~~~~~~r~-------~~~~~f~~-g~~~vlv~T 91 (150)
+++.++-.|. .+-+.|++ ...+||+--
T Consensus 204 ts~~~~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~ 238 (449)
T TIGR03305 204 QMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLI 238 (449)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEe
Confidence 3455565553 34455665 223555443
No 353
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=45.03 E-value=86 Score=22.89 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=33.4
Q ss_pred hHHHHHhhccc-cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 46 NAEELANSLTV-KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 46 ~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.++++.+.++. ..+-++.+|++.+.+ ++.+..|-+|...++++|.
T Consensus 132 ~~d~~i~~lk~~~d~IIVd~HaeatsE--K~a~~~~ldg~vsaVvGtH 177 (266)
T TIGR00282 132 VLKELINMLKKDCDLIFVDFHAETTSE--KNAFGMAFDGYVTAVVGTH 177 (266)
T ss_pred HHHHHHHhhhcCCCEEEEEeCCCCHHH--HHHHHHHhCCCccEEEeCC
Confidence 35555555554 246688999997664 6668899999999999996
No 354
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=44.96 E-value=1.7e+02 Score=24.67 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=30.7
Q ss_pred hhhHHHHHhhccccCceEEEecCC--------------------CCHHHHHHHHHHhhcCC
Q psy17637 44 QLNAEELANSLTVKEYDVLLLHGD--------------------MDQSERNSVITKFKRQE 84 (150)
Q Consensus 44 ~~~~~~l~~~L~~~~~~~~~~~~~--------------------~~~~~r~~~~~~f~~g~ 84 (150)
+..+.+..+.|+..|+++..++|+ ++|+++.++++.++...
T Consensus 447 R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~PedK~~iV~~lQ~~G 507 (679)
T PRK01122 447 KPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEATPEDKLALIRQEQAEG 507 (679)
T ss_pred chhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCCHHHHHHHHHHHHHcC
Confidence 556666777777777776666664 88999999999998643
No 355
>KOG4175|consensus
Probab=44.94 E-value=1.1e+02 Score=21.62 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=40.3
Q ss_pred hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccC
Q psy17637 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGL 98 (150)
Q Consensus 44 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 98 (150)
.++++.+.+..+++++...++..-.+.++|.+.+....++= |-|.+.+...|.
T Consensus 134 pEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsF--iYvVSrmG~TG~ 186 (268)
T KOG4175|consen 134 PEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSF--IYVVSRMGVTGT 186 (268)
T ss_pred hHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcce--EEEEEecccccc
Confidence 56788899999999999999999999999999888877653 334444444443
No 356
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=44.62 E-value=1.2e+02 Score=22.12 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=53.2
Q ss_pred EEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcccc-CceEEEecCCCCHH-HHHHHHHHhhcC--C
Q psy17637 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK-EYDVLLLHGDMDQS-ERNSVITKFKRQ--E 84 (150)
Q Consensus 9 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~-~r~~~~~~f~~g--~ 84 (150)
+..+.--..-.-..+...+-+ .+..+|+...+.+.++++++.|... ++.+.++.-+++.. ....+....++. .
T Consensus 8 ~~lITGASsGIG~~~A~~lA~---~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~ 84 (265)
T COG0300 8 TALITGASSGIGAELAKQLAR---RGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGP 84 (265)
T ss_pred EEEEECCCchHHHHHHHHHHH---CCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCc
Confidence 333343333333455555544 5778999999999999999999865 57777777777544 445555555553 6
Q ss_pred ceEEEEc
Q psy17637 85 CRILVAT 91 (150)
Q Consensus 85 ~~vlv~T 91 (150)
+.+||..
T Consensus 85 IdvLVNN 91 (265)
T COG0300 85 IDVLVNN 91 (265)
T ss_pred ccEEEEC
Confidence 7888876
No 357
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=44.47 E-value=1.3e+02 Score=25.69 Aligned_cols=47 Identities=11% Similarity=-0.000 Sum_probs=36.8
Q ss_pred CCCCCeeEEehhh----hhHHHHHhhccccCceEEEecCCCCHHHHHHHHH
Q psy17637 32 QEVPPALMNLAMQ----LNAEELANSLTVKEYDVLLLHGDMDQSERNSVIT 78 (150)
Q Consensus 32 ~~~~~~ivf~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 78 (150)
..+.++-|.+.+. ..++++...+...|+++.++.+++++++|+.+..
T Consensus 117 L~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY~ 167 (764)
T PRK12326 117 LQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAYA 167 (764)
T ss_pred HcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHc
Confidence 3677888888774 4566777777777999999999999999887653
No 358
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=44.36 E-value=1.6e+02 Score=24.95 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHhccCCCCCeeEEe-hhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc-CCceEEEEcC--
Q psy17637 17 KEFAGHLVRNLEGANQEVPPALMNL-AMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR-QECRILVATD-- 92 (150)
Q Consensus 17 ~~~~~~ll~~l~~~~~~~~~~ivf~-~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~-- 92 (150)
.....+.++.|.+. +-++++-+ .++..++.+++.|- +.-+|+++.|+++.+.+++++. |..-.+|+-.
T Consensus 539 R~~a~~aI~~L~~~---Gi~~~mLTGDn~~~A~~iA~~lG-----Id~v~AellPedK~~~V~~l~~~g~~VamVGDGIN 610 (713)
T COG2217 539 RPDAKEAIAALKAL---GIKVVMLTGDNRRTAEAIAKELG-----IDEVRAELLPEDKAEIVRELQAEGRKVAMVGDGIN 610 (713)
T ss_pred ChhHHHHHHHHHHC---CCeEEEEcCCCHHHHHHHHHHcC-----hHhheccCCcHHHHHHHHHHHhcCCEEEEEeCCch
Confidence 33345667777665 33355555 44566778887763 2457888999999999999984 4333334321
Q ss_pred ------------CCcccCCc--cCCcEEEEecCCCChhHHHHhhcc
Q psy17637 93 ------------VAARGLDI--PHIRTVVNYDLARDIDTHTHRIGR 124 (150)
Q Consensus 93 ------------~~~~Gidi--~~~~~vi~~~~~~~~~~~~q~~GR 124 (150)
+.+.|.|+ ...+.|+.-+-+......++..-+
T Consensus 611 DAPALA~AdVGiAmG~GtDvA~eaADvvL~~~dL~~v~~ai~lsr~ 656 (713)
T COG2217 611 DAPALAAADVGIAMGSGTDVAIEAADVVLMRDDLSAVPEAIDLSRA 656 (713)
T ss_pred hHHHHhhcCeeEeecCCcHHHHHhCCEEEecCCHHHHHHHHHHHHH
Confidence 12224443 566777776666655555544433
No 359
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=44.21 E-value=76 Score=23.80 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=34.5
Q ss_pred hhhHHHHHhhccccCceEEEecCCC-CHHHHHHHHHHhhcCCceEEEEcCC
Q psy17637 44 QLNAEELANSLTVKEYDVLLLHGDM-DQSERNSVITKFKRQECRILVATDV 93 (150)
Q Consensus 44 ~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~r~~~~~~f~~g~~~vlv~T~~ 93 (150)
.+.++.+.+.+.....-...+.|.| +.--|.-+....+.|-+.++|+|-.
T Consensus 41 ~~A~~i~~~ml~d~~~ifL~~tg~mvs~Glr~ii~~Li~~~~VD~iVtTga 91 (312)
T PRK01221 41 VRASEILKEMISDADLRFLSFTANLVSTGLRGLIADLIKRGLFNVVITTCG 91 (312)
T ss_pred HHHHHHHHHHHcCCCeEEEEecchhHHHHHHHHHHHHHHcCCeeEEEeCCC
Confidence 4556666777665565567888998 4445555556667888999999953
No 360
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=44.05 E-value=1.2e+02 Score=21.64 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=52.7
Q ss_pred CCCCeeEEehhh-----------hhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC----CceEEEEcCCCccc
Q psy17637 33 EVPPALMNLAMQ-----------LNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ----ECRILVATDVAARG 97 (150)
Q Consensus 33 ~~~~~ivf~~~~-----------~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g----~~~vlv~T~~~~~G 97 (150)
+.+-+||+.+.. ..++.|++.|...|+.+. ++..++..+-.+.++.|... ...++|+. .++.|
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sHG 84 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVH-VKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHG 84 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCCC
Confidence 455677777753 358899999998898765 56678898999999888763 23344333 45566
Q ss_pred CCccCCcEEEEecC-CCChhHHHHh
Q psy17637 98 LDIPHIRTVVNYDL-ARDIDTHTHR 121 (150)
Q Consensus 98 idi~~~~~vi~~~~-~~~~~~~~q~ 121 (150)
.. +.|+-.|. +-++.+....
T Consensus 85 ~~----~~l~~~D~~~v~l~~i~~~ 105 (241)
T smart00115 85 EE----GGIYGTDHSPLPLDEIFSL 105 (241)
T ss_pred CC----CeEEEecCCEEEHHHHHHh
Confidence 32 45554443 3344444443
No 361
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=43.85 E-value=36 Score=29.03 Aligned_cols=59 Identities=25% Similarity=0.262 Sum_probs=39.0
Q ss_pred hHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCccc-------CCccCCcEEEE
Q psy17637 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAARG-------LDIPHIRTVVN 108 (150)
Q Consensus 46 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~G-------idi~~~~~vi~ 108 (150)
....|...+...|+++..-||++++.+|.+ +......||++|+ .+.-- -.+.++.+||.
T Consensus 89 i~~rL~~~~~~~G~~v~vRhGDT~~~er~r----~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIV 155 (814)
T COG1201 89 IRRRLEEPLRELGIEVAVRHGDTPQSEKQK----MLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIV 155 (814)
T ss_pred HHHHHHHHHHHcCCccceecCCCChHHhhh----ccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEe
Confidence 344555555667999999999999988874 3445567999995 22111 12457777763
No 362
>PLN02522 ATP citrate (pro-S)-lyase
Probab=43.56 E-value=1.6e+02 Score=24.35 Aligned_cols=54 Identities=9% Similarity=0.073 Sum_probs=42.0
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCCHHHHHHHHHHhhcCCce
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMDQSERNSVITKFKRQECR 86 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~~ 86 (150)
.-.-.|||++-+...+.+.+.+...+++ +.++.++.+.....++.+..+....+
T Consensus 78 ~~~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~r 132 (608)
T PLN02522 78 TADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKV 132 (608)
T ss_pred CCcEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCE
Confidence 3456889999999999999998877775 66778888887777777777765554
No 363
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=43.52 E-value=44 Score=19.35 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=17.8
Q ss_pred CCeeEEehhhhhHHHHHhhccccC
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKE 58 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~ 58 (150)
++++|++.+.+.++..+..+...+
T Consensus 48 G~avv~~~~~e~ae~~~~~l~~~g 71 (82)
T PF02617_consen 48 GRAVVGTGSREEAEEYAEKLQRAG 71 (82)
T ss_dssp SEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCEeeeeCCHHHHHHHHHHHHHHh
Confidence 567788888888888877776554
No 364
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=43.33 E-value=32 Score=22.56 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=11.0
Q ss_pred cCCccCCcEEEEecCCCChhHHHHhhccccCCCC
Q psy17637 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130 (150)
Q Consensus 97 Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~ 130 (150)
++|+.++++|| ..||.|=+|.
T Consensus 87 avD~~dADlvI-------------ARGRLGvPGS 107 (154)
T PF11576_consen 87 AVDISDADLVI-------------ARGRLGVPGS 107 (154)
T ss_dssp HHHHH--SEEE-------------EEEE-SSTTS
T ss_pred heeccCCcEEE-------------EcccccCCCC
Confidence 55666666666 4566666663
No 365
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=42.87 E-value=1.1e+02 Score=21.22 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=28.9
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHH
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNS 75 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 75 (150)
..++-||++. ..+++.+.+...++.+.-+||..+++.-..
T Consensus 53 ~~~VgVf~~~--~~~~i~~~~~~~~~d~vQLHG~e~~~~~~~ 92 (207)
T PRK13958 53 IDKVCVVVNP--DLTTIEHILSNTSINTIQLHGTESIDFIQE 92 (207)
T ss_pred CCEEEEEeCC--CHHHHHHHHHhCCCCEEEECCCCCHHHHHH
Confidence 4568888776 556666666667888999999988765443
No 366
>KOG0701|consensus
Probab=42.81 E-value=9.4 Score=34.69 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=47.3
Q ss_pred HHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCC
Q psy17637 72 ERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128 (150)
Q Consensus 72 ~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~ 128 (150)
.|......|..+++..+++|.....|.++..++.|+.++.-.+...+.|..|++--.
T Consensus 709 ~rn~~~~~~~~~~v~~~~~pss~~~g~~~~~~~~v~~~~~~~~i~~~~q~~~~~~~~ 765 (1606)
T KOG0701|consen 709 YRNDDQPQFYVAEVLPLLAPSSLFPGLDYETFNEVYRFKYALTITSLNQSLLDVDHT 765 (1606)
T ss_pred hhcccccceeeeeeeeeccchhcCCCcchheeeeeeeccccchhhhccccccccccc
Confidence 344444556667778889999999999999999999999999999999999987543
No 367
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=42.74 E-value=1e+02 Score=22.84 Aligned_cols=22 Identities=27% Similarity=0.108 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehh
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAM 43 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~ 43 (150)
.+.++++.+.+. +-..|+.+.|
T Consensus 26 a~~~lv~~li~~---Gv~gi~~~Gt 47 (299)
T COG0329 26 ALRRLVEFLIAA---GVDGLVVLGT 47 (299)
T ss_pred HHHHHHHHHHHc---CCCEEEECCC
Confidence 334444444443 3344444433
No 368
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=42.67 E-value=45 Score=23.08 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=42.7
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceE---EEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDV---LLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~---~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.|++.+... ....++++.+.. ..-..+.+.|...|..+ .+|.. .+........+.+..+.+.+++-|+
T Consensus 106 ~L~~~l~~~-~~~~~vl~~~g~-~~~~~l~~~L~~~g~~v~~~~vY~~-~~~~~~~~~~~~l~~~~~~~v~ftS 176 (231)
T PF02602_consen 106 GLAELLKEQ-LRGKRVLILRGE-GGRPDLPEKLREAGIEVTEVIVYET-PPEELSPELKEALDRGEIDAVVFTS 176 (231)
T ss_dssp HHHGGHHHC-CTTEEEEEEESS-SSCHHHHHHHHHTTEEEEEEECEEE-EEHHHHHHHHHHHHHTTTSEEEESS
T ss_pred HHHHHHHhh-CCCCeEEEEcCC-CccHHHHHHHHHCCCeEEEEEEeec-ccccchHHHHHHHHcCCCCEEEECC
Confidence 566666643 334556555544 33556777787766543 33334 6677778888888888877776664
No 369
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=41.39 E-value=25 Score=26.11 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=31.2
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDM 68 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 68 (150)
..++++.||..-=.||+...+|...|++ +..++||.
T Consensus 171 ~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGI 207 (308)
T COG1054 171 KDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGI 207 (308)
T ss_pred cCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchH
Confidence 5569999999999999999999998874 77888984
No 370
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=41.22 E-value=98 Score=21.92 Aligned_cols=42 Identities=19% Similarity=0.360 Sum_probs=27.5
Q ss_pred HHHHHhhccccCceEEEecCC-CCHHHHHHHHHHhhcCCceEE
Q psy17637 47 AEELANSLTVKEYDVLLLHGD-MDQSERNSVITKFKRQECRIL 88 (150)
Q Consensus 47 ~~~l~~~L~~~~~~~~~~~~~-~~~~~r~~~~~~f~~g~~~vl 88 (150)
++.+..+|...+..++.+.+. .+.+.|+.+++.+....+++|
T Consensus 84 l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vl 126 (222)
T PF01591_consen 84 LEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVL 126 (222)
T ss_dssp HHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 456667777667788888876 577777888888887666666
No 371
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=41.17 E-value=27 Score=26.64 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=28.2
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 68 (150)
.+..++++||.+-..+...+..|...|++ +..+.|++
T Consensus 55 ~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 92 (376)
T PRK08762 55 DRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGF 92 (376)
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcH
Confidence 35678999999877777788888888874 66777663
No 372
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=40.74 E-value=95 Score=19.73 Aligned_cols=86 Identities=17% Similarity=0.252 Sum_probs=47.5
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccC--
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGL-- 98 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi-- 98 (150)
..++..+... ...++.|+..+.+.++.+++.+....+.+..+.. +. ..+ .+..++|.+....+-+
T Consensus 25 r~v~~~L~~~--g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~-~~-----~~~-----~~~DivI~aT~~~~~~i~ 91 (135)
T PF01488_consen 25 RAVAAALAAL--GAKEITIVNRTPERAEALAEEFGGVNIEAIPLED-LE-----EAL-----QEADIVINATPSGMPIIT 91 (135)
T ss_dssp HHHHHHHHHT--TSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG-HC-----HHH-----HTESEEEE-SSTTSTSST
T ss_pred HHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHcCccccceeeHHH-HH-----HHH-----hhCCeEEEecCCCCcccC
Confidence 3555556554 4455888888888899998888544444444432 11 111 2346676665444322
Q ss_pred --CccCC----cEEEEecCCCChhHHH
Q psy17637 99 --DIPHI----RTVVNYDLARDIDTHT 119 (150)
Q Consensus 99 --di~~~----~~vi~~~~~~~~~~~~ 119 (150)
.+... .++++...|.+.+.-+
T Consensus 92 ~~~~~~~~~~~~~v~Dla~Pr~i~~~v 118 (135)
T PF01488_consen 92 EEMLKKASKKLRLVIDLAVPRDIDPEV 118 (135)
T ss_dssp HHHHTTTCHHCSEEEES-SS-SB-TTC
T ss_pred HHHHHHHHhhhhceeccccCCCCChhh
Confidence 23333 4889998888776543
No 373
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=40.44 E-value=26 Score=26.95 Aligned_cols=37 Identities=11% Similarity=0.202 Sum_probs=30.0
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 68 (150)
.+..++++||.+-..+...+..|...|++ +..+.|++
T Consensus 341 ~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~ 378 (392)
T PRK07878 341 PQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGV 378 (392)
T ss_pred CCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcH
Confidence 35678999999877788888888888885 77888886
No 374
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=40.24 E-value=1.2e+02 Score=22.36 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=11.0
Q ss_pred cCCCCHHHHHHHHHHhhc-CCceEEEEcC
Q psy17637 65 HGDMDQSERNSVITKFKR-QECRILVATD 92 (150)
Q Consensus 65 ~~~~~~~~r~~~~~~f~~-g~~~vlv~T~ 92 (150)
.|..+-++-.+..+...+ |---+++.++
T Consensus 76 v~~~~t~~ai~~a~~A~~~Gad~v~v~pP 104 (294)
T TIGR02313 76 TGALNHDETLELTKFAEEAGADAAMVIVP 104 (294)
T ss_pred CCcchHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 333333333333333333 3334555554
No 375
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=40.14 E-value=93 Score=22.14 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=34.9
Q ss_pred CCeeEEehhhhhHHHHHhhccccCceEE---EecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKEYDVL---LLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~~~~~---~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.+-|++......-+.+.+.|...|..+. .|.-..+......+.+.+..+.+.+++-|+
T Consensus 130 ~~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~ftS 190 (255)
T PRK05752 130 DPRVLIMRGEGGRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVVSS 190 (255)
T ss_pred CCEEEEEccCccHHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEEECC
Confidence 3445566666677788888888776542 232223333345666777777777665554
No 376
>PRK07411 hypothetical protein; Validated
Probab=39.83 E-value=33 Score=26.39 Aligned_cols=37 Identities=8% Similarity=0.007 Sum_probs=30.2
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMD 69 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 69 (150)
+..++++||.+-..+...+..|...|++...+.|++.
T Consensus 341 ~d~~IVvyC~~G~RS~~aa~~L~~~G~~~~~l~GG~~ 377 (390)
T PRK07411 341 NGHRLIAHCKMGGRSAKALGILKEAGIEGTNVKGGIT 377 (390)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCeEEecchHH
Confidence 4568999999988888888889888888777788753
No 377
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=39.46 E-value=1.2e+02 Score=23.57 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=35.2
Q ss_pred hHHHHHhhccccC---ceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCc
Q psy17637 46 NAEELANSLTVKE---YDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAA 95 (150)
Q Consensus 46 ~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 95 (150)
.+...++.|++.| +.+...||-++ ...+++.+.|.+|.+.-+++|+...
T Consensus 279 Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi~ 330 (382)
T PRK06827 279 SMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLVY 330 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCCc
Confidence 3445566666554 45777899888 7777777888888788888887763
No 378
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=39.18 E-value=2.2e+02 Score=23.48 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=7.7
Q ss_pred ChhHHHHhhccc
Q psy17637 114 DIDTHTHRIGRT 125 (150)
Q Consensus 114 ~~~~~~q~~GR~ 125 (150)
-+..+.-|+||+
T Consensus 358 rLa~~yERAG~~ 369 (578)
T TIGR01043 358 RLAEFYERAGRV 369 (578)
T ss_pred HHHHHHHhhccc
Confidence 355556677776
No 379
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=39.06 E-value=1.4e+02 Score=25.71 Aligned_cols=46 Identities=13% Similarity=0.008 Sum_probs=36.9
Q ss_pred CCCCCeeEEehh----hhhHHHHHhhccccCceEEEecCCCCHHHHHHHH
Q psy17637 32 QEVPPALMNLAM----QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVI 77 (150)
Q Consensus 32 ~~~~~~ivf~~~----~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 77 (150)
..+.++-|.+++ +..++.+...+...|+++.++.+++++++|..+.
T Consensus 119 l~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y 168 (796)
T PRK12906 119 LTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAY 168 (796)
T ss_pred HcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHh
Confidence 367788888877 4466777777777899999999999999987654
No 380
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=38.77 E-value=93 Score=22.89 Aligned_cols=66 Identities=12% Similarity=0.207 Sum_probs=45.9
Q ss_pred eeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCc
Q psy17637 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIR 104 (150)
Q Consensus 37 ~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~ 104 (150)
-+|+|........|...+.-.. +...+|..-..+....++.....|+ .|-+-+|+.--+|.-|+..
T Consensus 32 D~iaaEDTR~t~~LL~~~~I~~-~~is~h~hne~~~~~~li~~l~~g~-~valVSDAG~P~ISDPG~~ 97 (275)
T COG0313 32 DVIAAEDTRVTRKLLSHLGIKT-PLISYHEHNEKEKLPKLIPLLKKGK-SVALVSDAGTPLISDPGYE 97 (275)
T ss_pred CEEEEeccHHHHHHHHHhCCCC-ceecccCCcHHHHHHHHHHHHhcCC-eEEEEecCCCCcccCccHH
Confidence 5789988888888888875433 3556676665666677777777775 5556667777677766654
No 381
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=38.71 E-value=39 Score=19.76 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=23.6
Q ss_pred hhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 52 NSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 52 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
+.|+..|+.+-.++..... ....+++.+++|++..+|.|.
T Consensus 24 ~~L~~~Gi~~~~~~~ki~~-~~~~i~~~i~~g~id~VIn~~ 63 (90)
T smart00851 24 KFLREAGLPVKTLHPKVHG-GILAILDLIKNGEIDLVINTL 63 (90)
T ss_pred HHHHHCCCcceeccCCCCC-CCHHHHHHhcCCCeEEEEECC
Confidence 4455567765323322211 123588889999998888874
No 382
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.68 E-value=1.3e+02 Score=20.86 Aligned_cols=62 Identities=10% Similarity=0.195 Sum_probs=34.3
Q ss_pred CCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHH--------HHHHHHHhhcCCc-eEEEEcCCCccc
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE--------RNSVITKFKRQEC-RILVATDVAARG 97 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~--------r~~~~~~f~~g~~-~vlv~T~~~~~G 97 (150)
...|..+.+...+..+-+. ....-...+++|.+++-+ -...+++.+++.+ .|++||+.-.+|
T Consensus 78 ~~~iCVVE~~~Dv~aiE~~-~~y~G~YhVL~G~iSPldgigp~~l~i~~L~~Ri~~~~v~EVIlAt~~tvEG 148 (195)
T TIGR00615 78 NSVICVVEDPKDVFALEKT-KEFRGRYHVLGGHISPLDGIGPEDLTIAALLKRLQEESVKEVILATNPTVEG 148 (195)
T ss_pred CCEEEEECCHHHHHHHHhh-CccceEEEEccCccCccCCCChhhcCHHHHHHHHhcCCCcEEEEeCCCCchH
Confidence 3455555555544444332 222334667776544332 2456667766555 599999766555
No 383
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=38.52 E-value=1.4e+02 Score=20.86 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=29.6
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHH
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVI 77 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 77 (150)
..++.||++. ..+.+.+.++..++.+.-+||..+++.-..+.
T Consensus 55 i~~VgVf~~~--~~~~i~~~~~~~~~d~vQLHg~e~~~~~~~l~ 96 (210)
T PRK01222 55 VKVVGVFVNA--SDEEIDEIVETVPLDLLQLHGDETPEFCRQLK 96 (210)
T ss_pred CCEEEEEeCC--CHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH
Confidence 5678888875 45556666666788899999998876544443
No 384
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=38.09 E-value=2.1e+02 Score=22.88 Aligned_cols=20 Identities=10% Similarity=0.057 Sum_probs=10.9
Q ss_pred EecCCCCHHHHHH-------HHHHhhc
Q psy17637 63 LLHGDMDQSERNS-------VITKFKR 82 (150)
Q Consensus 63 ~~~~~~~~~~r~~-------~~~~f~~ 82 (150)
.-+++.++-.|.. +-+.|++
T Consensus 207 ~atsd~p~~~R~~a~~~a~tiAEyfrd 233 (461)
T TIGR01039 207 YGQMNEPPGARMRVALTGLTMAEYFRD 233 (461)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666643 3455665
No 385
>KOG2792|consensus
Probab=37.60 E-value=1.6e+02 Score=21.56 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=44.7
Q ss_pred cchhhHHHHHHHHHHhcc-CCCCCeeEEe-hhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhh
Q psy17637 14 DKDKEFAGHLVRNLEGAN-QEVPPALMNL-AMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81 (150)
Q Consensus 14 ~~~~~~~~~ll~~l~~~~-~~~~~~ivf~-~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 81 (150)
+++.+++...++.+.... .+..|+.|-| +-++..+.+++++.+-..+..-++|. .++-.++-+.|+
T Consensus 156 PdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT--~eqvk~vak~yR 223 (280)
T KOG2792|consen 156 PDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGT--TEQVKQVAKKYR 223 (280)
T ss_pred hHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCC--HHHHHHHHHHhE
Confidence 456677778888776651 1122455555 34677888888888777777878887 566667777765
No 386
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=37.59 E-value=1.1e+02 Score=21.19 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=19.3
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCce
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYD 60 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~ 60 (150)
.++..+......+.+ +++.......+.+.+.|...|..
T Consensus 113 ~l~~~l~~~~~~~~~-ili~~~~~~~~~l~~~L~~~G~~ 150 (249)
T PRK05928 113 ELLLELPELLLKGKR-VLYLRGNGGREVLGDTLEERGAE 150 (249)
T ss_pred HHHHhChhhhcCCCE-EEEECCCCCHHHHHHHHHHCCCE
Confidence 344444433223334 44444445566777777766544
No 387
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=37.49 E-value=1.3e+02 Score=21.88 Aligned_cols=32 Identities=16% Similarity=0.090 Sum_probs=12.1
Q ss_pred EEEecCCCCHHHHHHHHHHhhc-CCceEEEEcC
Q psy17637 61 VLLLHGDMDQSERNSVITKFKR-QECRILVATD 92 (150)
Q Consensus 61 ~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~ 92 (150)
+..-.|..+-++-.+..+..++ |---+++.++
T Consensus 73 vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P 105 (289)
T PF00701_consen 73 VIAGVGANSTEEAIELARHAQDAGADAVLVIPP 105 (289)
T ss_dssp EEEEEESSSHHHHHHHHHHHHHTT-SEEEEEES
T ss_pred EEecCcchhHHHHHHHHHHHhhcCceEEEEecc
Confidence 3333344444444333333333 2223444443
No 388
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=37.43 E-value=41 Score=25.74 Aligned_cols=35 Identities=9% Similarity=0.150 Sum_probs=28.1
Q ss_pred CCeeEEehhhhhHHHHHhhccccCce--EEEecCCCC
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKEYD--VLLLHGDMD 69 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~~~--~~~~~~~~~ 69 (150)
.+++++|.+-......+..|...|+. +..+.||+.
T Consensus 333 ~~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 333 DNVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred CcEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 38999999988888888888888876 577778764
No 389
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=37.16 E-value=1.5e+02 Score=20.97 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=37.4
Q ss_pred eeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehh-----hhhHHHHHhhccccCceEEEecCC
Q psy17637 7 VAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAM-----QLNAEELANSLTVKEYDVLLLHGD 67 (150)
Q Consensus 7 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~-----~~~~~~l~~~L~~~~~~~~~~~~~ 67 (150)
+.+........++...+++-.... ...++++|+|. .++..++.+......+++..+-..
T Consensus 137 ik~e~~~~~~~eki~~~lki~~~l--~~kki~ifvNl~~YLt~eei~el~~~i~~~~~~vlliE~~ 200 (216)
T TIGR01866 137 IKFETQSDTLLEKCLEILQIFKEL--TKKKLFIFINSGAFLTKDELAELQKFISYTKLTVLFLEPR 200 (216)
T ss_pred eeeeeccCcHHHHHHHHHHHHHHH--hcCcEEEEEcHHHhCCHHHHHHHHHHHHHhcccEEEEecc
Confidence 344433344555666666666666 67799999986 445667777666666666655443
No 390
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=36.86 E-value=1.4e+02 Score=20.46 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=20.1
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCce
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYD 60 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~ 60 (150)
.|++.+......+ ..|++.........+.+.|...|..
T Consensus 110 ~L~~~i~~~~~~~-~~il~~~g~~~~~~l~~~L~~~g~~ 147 (239)
T cd06578 110 GLLELLELQDGKG-KRILRPRGGRAREDLAEALRERGAE 147 (239)
T ss_pred HHHHHHHhcCCCC-CEEEEEcCcchhHHHHHHHHHCCCE
Confidence 5666666542233 4444444444455666777665544
No 391
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=36.55 E-value=1.6e+02 Score=21.19 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=12.6
Q ss_pred EEEecCCCCHHHHHHHHHHhhc-CCceEEEEcC
Q psy17637 61 VLLLHGDMDQSERNSVITKFKR-QECRILVATD 92 (150)
Q Consensus 61 ~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~ 92 (150)
+..--+..+-++-.+..+...+ |-.-+++.++
T Consensus 69 vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 69 VIAGVGANSTREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred EEEecCCccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 3333344444333333333333 4334555443
No 392
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=36.54 E-value=1.4e+02 Score=21.77 Aligned_cols=7 Identities=43% Similarity=0.363 Sum_probs=2.7
Q ss_pred HHHHHHH
Q psy17637 22 HLVRNLE 28 (150)
Q Consensus 22 ~ll~~l~ 28 (150)
.+++.+.
T Consensus 26 ~~i~~l~ 32 (292)
T PRK03170 26 KLVDYLI 32 (292)
T ss_pred HHHHHHH
Confidence 3333333
No 393
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=36.35 E-value=51 Score=27.13 Aligned_cols=37 Identities=8% Similarity=-0.053 Sum_probs=28.5
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 68 (150)
.+..++|+||++--.+-.++-.|+..|++ +..|.|++
T Consensus 221 ~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw 258 (610)
T PRK09629 221 TPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSW 258 (610)
T ss_pred CCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCH
Confidence 35678999999866666667777777875 77888885
No 394
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=36.33 E-value=1.3e+02 Score=22.05 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=5.4
Q ss_pred CCHHHHHHHHHH
Q psy17637 68 MDQSERNSVITK 79 (150)
Q Consensus 68 ~~~~~r~~~~~~ 79 (150)
|+.++|.++++.
T Consensus 55 Lt~eEr~~v~~~ 66 (296)
T TIGR03249 55 LTPAEYEQVVEI 66 (296)
T ss_pred CCHHHHHHHHHH
Confidence 444444444443
No 395
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=36.08 E-value=77 Score=17.32 Aligned_cols=44 Identities=16% Similarity=0.006 Sum_probs=27.8
Q ss_pred eeEEehh-hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHh
Q psy17637 37 ALMNLAM-QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80 (150)
Q Consensus 37 ~ivf~~~-~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 80 (150)
+.+|+.+ =..|..+...|.+.++....+.-...++.+..+.+..
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~ 46 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRS 46 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh
Confidence 3455533 2356777777877888877777666666666555444
No 396
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=35.89 E-value=1.2e+02 Score=19.68 Aligned_cols=75 Identities=12% Similarity=0.030 Sum_probs=39.5
Q ss_pred EEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcccc-CceEEEecCCCCHHHHHHHHHHhhcCCceE
Q psy17637 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK-EYDVLLLHGDMDQSERNSVITKFKRQECRI 87 (150)
Q Consensus 9 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 87 (150)
+......++..+..++..+.+. ..+-+ |+-+. ..+ +.|... |+.+..+.++.. ..+.++.+.+++|++..
T Consensus 8 ~lsv~d~dK~~l~~~a~~l~~l-l~Gf~-l~AT~--gTa----~~L~~~~Gi~v~~vi~~~~-gg~~~i~~~I~~g~i~l 78 (142)
T PRK05234 8 ALIAHDHKKDDLVAWVKAHKDL-LEQHE-LYATG--TTG----GLIQEATGLDVTRLLSGPL-GGDQQIGALIAEGKIDM 78 (142)
T ss_pred EEEEeccchHHHHHHHHHHHHH-hcCCE-EEEeC--hHH----HHHHhccCCeeEEEEcCCC-CCchhHHHHHHcCceeE
Confidence 3334445555455555555543 11222 33333 233 344455 776554332210 11356889999999999
Q ss_pred EEEcC
Q psy17637 88 LVATD 92 (150)
Q Consensus 88 lv~T~ 92 (150)
+|.|.
T Consensus 79 VInt~ 83 (142)
T PRK05234 79 LIFFR 83 (142)
T ss_pred EEEec
Confidence 88885
No 397
>PHA02558 uvsW UvsW helicase; Provisional
Probab=35.62 E-value=2e+02 Score=22.92 Aligned_cols=23 Identities=4% Similarity=0.026 Sum_probs=18.8
Q ss_pred CCCeeEEehhhhhHHHHHhhccc
Q psy17637 34 VPPALMNLAMQLNAEELANSLTV 56 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~ 56 (150)
..++||.++|++-++...+.|..
T Consensus 158 ~~~vLilvpt~eL~~Q~~~~l~~ 180 (501)
T PHA02558 158 EGKVLIIVPTTSLVTQMIDDFVD 180 (501)
T ss_pred CCeEEEEECcHHHHHHHHHHHHH
Confidence 34899999999988888777764
No 398
>PRK08118 topology modulation protein; Reviewed
Probab=35.05 E-value=1.3e+02 Score=19.94 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCCCChh
Q psy17637 68 MDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDID 116 (150)
Q Consensus 68 ~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~ 116 (150)
.++++...+++.+..++..|+=+........-++.++.+|.++.|....
T Consensus 44 ~~~~~~~~~~~~~~~~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~ 92 (167)
T PRK08118 44 VPKEEQITVQNELVKEDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTIC 92 (167)
T ss_pred CCHHHHHHHHHHHhcCCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHH
Confidence 4455555566665555443443322211223346789999999996543
No 399
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=34.75 E-value=1.7e+02 Score=21.27 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=4.5
Q ss_pred CCHHHHHHHHH
Q psy17637 68 MDQSERNSVIT 78 (150)
Q Consensus 68 ~~~~~r~~~~~ 78 (150)
|+.++|.++++
T Consensus 48 Ls~~Er~~~~~ 58 (285)
T TIGR00674 48 LSHEEHKKVIE 58 (285)
T ss_pred CCHHHHHHHHH
Confidence 34444444433
No 400
>PRK09099 type III secretion system ATPase; Provisional
Probab=34.38 E-value=2.4e+02 Score=22.41 Aligned_cols=9 Identities=22% Similarity=0.191 Sum_probs=4.6
Q ss_pred hHHHHhhcc
Q psy17637 116 DTHTHRIGR 124 (150)
Q Consensus 116 ~~~~q~~GR 124 (150)
..++-|+|+
T Consensus 294 ~~l~ERag~ 302 (441)
T PRK09099 294 PRLLERAGM 302 (441)
T ss_pred HHHHHhhcC
Confidence 344456654
No 401
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=34.14 E-value=1.9e+02 Score=21.32 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=43.6
Q ss_pred CCCCCeeEEehh-hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCcccCCccCCcEEEE
Q psy17637 32 QEVPPALMNLAM-QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAARGLDIPHIRTVVN 108 (150)
Q Consensus 32 ~~~~~~ivf~~~-~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidi~~~~~vi~ 108 (150)
...+.+|||++. -+++|+|++.+-...-.-..++|... .+-+.| |...++|-.+ .++.-.++|.+..+..
T Consensus 177 k~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~-----~ir~~~--Gkk~~~ies~~s~eeL~~ipgi~~~~~ 248 (300)
T COG4152 177 KEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVE-----DIRRSF--GKKRLVIESDLSLEELANIPGILKITE 248 (300)
T ss_pred HhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHH-----HHHHhc--CCceEEEeccCchHHHhcCCCceeeee
Confidence 556788999876 57899999987654333456777642 222223 6667777664 4444556676665543
No 402
>PRK13844 recombination protein RecR; Provisional
Probab=34.13 E-value=1.6e+02 Score=20.53 Aligned_cols=62 Identities=10% Similarity=0.195 Sum_probs=33.6
Q ss_pred CCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHH--------HHHHHHHhhcCCc-eEEEEcCCCccc
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE--------RNSVITKFKRQEC-RILVATDVAARG 97 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~--------r~~~~~~f~~g~~-~vlv~T~~~~~G 97 (150)
...|..+.+...+..+-+. ....-...+++|.+++-+ -...+++.+++.+ .|++||+.-.+|
T Consensus 82 ~~~iCVVE~~~Dv~aiE~t-~~y~G~YhVL~G~ispl~gi~p~~l~i~~L~~Ri~~~~v~EVIlAt~~t~EG 152 (200)
T PRK13844 82 DTKLCIIESMLDMIAIEEA-GIYRGKYFVLNGRISPLDGIGPSELKLDILQQIIADRKIDEVILAISPTVEG 152 (200)
T ss_pred CCEEEEECCHHHHHHHHhh-CccceEEEEccCccCccCCCChhhcCHHHHHHHHhcCCCcEEEEeCCCCccH
Confidence 4455555555544444332 222334666766543332 2455566666555 599999766554
No 403
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=33.94 E-value=1e+02 Score=18.02 Aligned_cols=43 Identities=12% Similarity=0.012 Sum_probs=27.0
Q ss_pred CCCeeEEehh------hhhHHHHHhhccccCceEEEecCCCCHHHHHHH
Q psy17637 34 VPPALMNLAM------QLNAEELANSLTVKEYDVLLLHGDMDQSERNSV 76 (150)
Q Consensus 34 ~~~~ivf~~~------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 76 (150)
..+++||+.+ =..|..+.+.|...++....+.=...++.+..+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l 55 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGL 55 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHH
Confidence 4689999764 235777888888777776655533344444433
No 404
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=33.65 E-value=1.6e+02 Score=20.19 Aligned_cols=48 Identities=23% Similarity=0.197 Sum_probs=29.3
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHH
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE 72 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 72 (150)
.-...|..... ...+.||.+. ..+++.+.+...++.+.-+||..+.+.
T Consensus 38 ~~a~~l~~~~~-~~~VgVf~~~--~~~~I~~~~~~~~ld~vQLHG~e~~e~ 85 (197)
T PF00697_consen 38 DQARELVSAVP-PKIVGVFVNQ--SPEEILEIVEELGLDVVQLHGDESPEY 85 (197)
T ss_dssp HHHHHHHCCSS-SSEEEEESSS---HHHHHHHHHHCTESEEEE-SGG-HHH
T ss_pred HHHHHHHHhcC-CCEEEEEcCC--CHHHHHHHHHHcCCCEEEECCCCCHHH
Confidence 44445544422 3367788775 556666767777889999999975443
No 405
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=33.58 E-value=1.9e+02 Score=21.18 Aligned_cols=57 Identities=5% Similarity=0.056 Sum_probs=44.3
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
...++|=+.+.+...++.+.+...+...+.=+.+++.++.+++-+.-+. ..++++.+
T Consensus 69 ~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~N 125 (266)
T COG0289 69 DADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPN 125 (266)
T ss_pred CCCEEEECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEecc
Confidence 4468888888888888888888888888888889998886666544443 77888875
No 406
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=33.36 E-value=2.6e+02 Score=22.60 Aligned_cols=10 Identities=10% Similarity=-0.044 Sum_probs=5.4
Q ss_pred hHHHHhhccc
Q psy17637 116 DTHTHRIGRT 125 (150)
Q Consensus 116 ~~~~q~~GR~ 125 (150)
..++.|+|+.
T Consensus 295 srLlERag~~ 304 (497)
T TIGR03324 295 SRLLERSTHL 304 (497)
T ss_pred HHHHHhhhhc
Confidence 4445566653
No 407
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=33.19 E-value=36 Score=15.93 Aligned_cols=11 Identities=27% Similarity=0.452 Sum_probs=8.2
Q ss_pred cCCceEEEEcC
Q psy17637 82 RQECRILVATD 92 (150)
Q Consensus 82 ~g~~~vlv~T~ 92 (150)
.|.++|.|+|.
T Consensus 2 ~g~LqI~ISTn 12 (30)
T PF14824_consen 2 RGPLQIAISTN 12 (30)
T ss_dssp -TTEEEEEEES
T ss_pred CCCeEEEEECC
Confidence 57788899885
No 408
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=33.01 E-value=1.1e+02 Score=19.06 Aligned_cols=48 Identities=10% Similarity=0.105 Sum_probs=24.3
Q ss_pred eeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceE
Q psy17637 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRI 87 (150)
Q Consensus 37 ~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 87 (150)
.++++-..+.+..+.+.+...|.+...++.+. ...++.+..+...+++
T Consensus 58 lavv~~~~~~~~~~v~~~~~~g~~~v~~~~g~---~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 58 LAVVCVPPDKVPEIVDEAAALGVKAVWLQPGA---ESEELIEAAREAGIRV 105 (116)
T ss_dssp EEEE-S-HHHHHHHHHHHHHHT-SEEEE-TTS-----HHHHHHHHHTT-EE
T ss_pred EEEEEcCHHHHHHHHHHHHHcCCCEEEEEcch---HHHHHHHHHHHcCCEE
Confidence 44444444555556666667788888888773 3345555555554443
No 409
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=33.00 E-value=1.4e+02 Score=19.49 Aligned_cols=55 Identities=15% Similarity=0.107 Sum_probs=34.0
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhh---HHHHHhhccccCceEEEecCCCCHHHHHHH
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLN---AEELANSLTVKEYDVLLLHGDMDQSERNSV 76 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 76 (150)
+.+++.+... ....+.|+|+...-. +.++.+.+++.++++...+|+..++...++
T Consensus 49 eel~~~I~~~-~~~~~gVt~SGGEl~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~i 106 (147)
T TIGR02826 49 EYLTKTLDKY-RSLISCVLFLGGEWNREALLSLLKIFKEKGLKTCLYTGLEPKDIPLEL 106 (147)
T ss_pred HHHHHHHHHh-CCCCCEEEEechhcCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
Confidence 3555555554 223468899987633 335566667778888888887765543333
No 410
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=32.76 E-value=1.5e+02 Score=21.65 Aligned_cols=10 Identities=20% Similarity=-0.133 Sum_probs=4.2
Q ss_pred HHHHHHHHHh
Q psy17637 20 AGHLVRNLEG 29 (150)
Q Consensus 20 ~~~ll~~l~~ 29 (150)
+..+++.+.+
T Consensus 23 l~~l~~~l~~ 32 (289)
T cd00951 23 YRAHVEWLLS 32 (289)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 411
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=32.73 E-value=1.1e+02 Score=22.26 Aligned_cols=87 Identities=18% Similarity=0.290 Sum_probs=49.9
Q ss_pred CCCeeEEehhhhhHHHHHhhccccC---ceEEEecCC-CCHHHHHHHHHHhhcCCceEEEEcC-----CCcc-cCCccCC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKE---YDVLLLHGD-MDQSERNSVITKFKRQECRILVATD-----VAAR-GLDIPHI 103 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~---~~~~~~~~~-~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidi~~~ 103 (150)
.+.+||.|.+--.+-.|...|.... ..++-+-+. +--++....+ +.+...|.|+|+ .++. .+.+.++
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L---~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLL---KKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHH---HhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 4668889988888888888877432 223322222 2333333333 446778999996 2222 3556666
Q ss_pred cEEEE------------ecCCCChhHHHHhhc
Q psy17637 104 RTVVN------------YDLARDIDTHTHRIG 123 (150)
Q Consensus 104 ~~vi~------------~~~~~~~~~~~q~~G 123 (150)
.+||. +|.|.+...+.+..+
T Consensus 203 ~~ivlD~s~~D~K~~~i~d~~e~~~~l~~lL~ 234 (252)
T PF14617_consen 203 KRIVLDWSYLDQKKRSIFDIPETREDLWKLLY 234 (252)
T ss_pred eEEEEcCCccccccccccccHHHHHHHHHHHh
Confidence 66652 555555555555433
No 412
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=32.64 E-value=47 Score=22.54 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=16.9
Q ss_pred CCCeeEEehhhh--hHHHHHhhccccCceEEEec
Q psy17637 34 VPPALMNLAMQL--NAEELANSLTVKEYDVLLLH 65 (150)
Q Consensus 34 ~~~~ivf~~~~~--~~~~l~~~L~~~~~~~~~~~ 65 (150)
..++++|++... .+..+++.|...++.++.+.
T Consensus 82 ~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 82 TDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp T-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE
Confidence 356777775532 45566666766666655555
No 413
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=32.20 E-value=2e+02 Score=20.84 Aligned_cols=108 Identities=18% Similarity=0.219 Sum_probs=60.8
Q ss_pred CCcCeeEEEeecchhhHHHHHHHHHHhcc-------CCCCCeeEEehhhhhHHHHHhhccccCceEEEec-CCCC-HHHH
Q psy17637 3 GNKGVAYTLVTDKDKEFAGHLVRNLEGAN-------QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLH-GDMD-QSER 73 (150)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~-~~~r 73 (150)
|..+.......++..++...+...+.... -....++|-|.+.+.++++.....+.|..+..+. |.+. +.-+
T Consensus 22 ~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~ 101 (255)
T COG1712 22 GRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGALADEGLR 101 (255)
T ss_pred CCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechhccChHHH
Confidence 44456666666776666666655543310 1456788889888888877766666666655544 4443 2222
Q ss_pred HH-----------------------HHHHhhcCCc-eEEEEc--CCCcccCCccCCcEEEEec
Q psy17637 74 NS-----------------------VITKFKRQEC-RILVAT--DVAARGLDIPHIRTVVNYD 110 (150)
Q Consensus 74 ~~-----------------------~~~~f~~g~~-~vlv~T--~~~~~Gidi~~~~~vi~~~ 110 (150)
+. .+...+.|.+ .|...| +..+.|+|+..-..|++-+
T Consensus 102 erl~~lak~~~~rv~~pSGAiGGlD~l~aar~g~i~~V~lttrKpp~~lg~dl~~~ktVlfeG 164 (255)
T COG1712 102 ERLRELAKCGGARVYLPSGAIGGLDALAAARVGGIEEVVLTTRKPPAELGIDLEDKKTVLFEG 164 (255)
T ss_pred HHHHHHHhcCCcEEEecCccchhHHHHHHhhcCCeeEEEEEeecChHHhCcCcccCceEEEec
Confidence 22 2233332333 344455 4556788877655566533
No 414
>KOG0952|consensus
Probab=31.81 E-value=2.4e+02 Score=25.29 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHhcc------CCCCCeeEEehhhhhHHHHHhhcccc----CceEEEecCCCCHHHHHHHHHHhhcCCce
Q psy17637 17 KEFAGHLVRNLEGAN------QEVPPALMNLAMQLNAEELANSLTVK----EYDVLLLHGDMDQSERNSVITKFKRQECR 86 (150)
Q Consensus 17 ~~~~~~ll~~l~~~~------~~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 86 (150)
.-....+++.+.+.. ...-++|-.++++.-|.++++.+..+ |+.+..++|++.-..-+ + ...+
T Consensus 141 ~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te-i------~~tq 213 (1230)
T KOG0952|consen 141 VLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE-I------ADTQ 213 (1230)
T ss_pred HHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH-H------HhcC
Confidence 334456667776421 23456777779999888887777543 88999999997533222 2 2357
Q ss_pred EEEEcC
Q psy17637 87 ILVATD 92 (150)
Q Consensus 87 vlv~T~ 92 (150)
|||+|+
T Consensus 214 iiVTTP 219 (1230)
T KOG0952|consen 214 IIVTTP 219 (1230)
T ss_pred EEEecc
Confidence 899985
No 415
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=30.53 E-value=2.8e+02 Score=22.14 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=13.1
Q ss_pred CCCCHHHHH-------HHHHHhhcC-CceEEEEcC
Q psy17637 66 GDMDQSERN-------SVITKFKRQ-ECRILVATD 92 (150)
Q Consensus 66 ~~~~~~~r~-------~~~~~f~~g-~~~vlv~T~ 92 (150)
++.++-.|. .+-+.|++. ..+||+--+
T Consensus 210 sd~~~~~R~~a~~~a~tiAEyfrd~~G~~VLl~~D 244 (461)
T PRK12597 210 MNEPPGARMRVVLTGLTIAEYLRDEEKEDVLLFID 244 (461)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEec
Confidence 455555553 344556543 335554443
No 416
>PF09711 Cas_Csn2: CRISPR-associated protein (Cas_Csn2); InterPro: IPR010146 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents the Csn2 family of Cas proteins, which are found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.; PDB: 3TOC_A 3QHQ_A 3S5U_C.
Probab=30.50 E-value=1.9e+02 Score=20.03 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=27.7
Q ss_pred HHHHHHHHHhccCCCCCeeEEehh-----hhhHHHHHhhccccCceEEEecCC
Q psy17637 20 AGHLVRNLEGANQEVPPALMNLAM-----QLNAEELANSLTVKEYDVLLLHGD 67 (150)
Q Consensus 20 ~~~ll~~l~~~~~~~~~~ivf~~~-----~~~~~~l~~~L~~~~~~~~~~~~~ 67 (150)
+...++.+... ...+++||+|- .++..++.+......+++.++-..
T Consensus 118 lieyl~v~~~L--~~kKllvfVNl~~YLT~eEl~el~e~i~~~~i~VL~IE~r 168 (188)
T PF09711_consen 118 LIEYLKVFSEL--LKKKLLVFVNLRSYLTEEELQELYEYIKYNKIKVLFIENR 168 (188)
T ss_dssp HHHHHHHHHH---TT--EEEEESGGGGS-HHHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHH--cCCCEEEEEchHHhcCHHHHHHHHHHHHHhCCeEEEEecc
Confidence 33444444444 66788999876 445667777776677777777654
No 417
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=30.44 E-value=2.5e+02 Score=21.44 Aligned_cols=68 Identities=15% Similarity=0.263 Sum_probs=42.1
Q ss_pred HHHHHHHhccCCCCCeeEEehhh----hhHHHHHhhccccCceEEEecC---CCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQ----LNAEELANSLTVKEYDVLLLHG---DMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~----~~~~~l~~~L~~~~~~~~~~~~---~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
.+-..+... ..++++|.+... ...+.+...|...++.+..+.+ ..+.+.-.+..+.++....+++|+-
T Consensus 18 ~l~~~l~~~--g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIav 92 (377)
T cd08176 18 EIGDELKNL--GFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISI 92 (377)
T ss_pred HHHHHHHHh--CCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 444444443 224666666431 2356778888777777666554 4556666777788887777777755
No 418
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=30.37 E-value=1.1e+02 Score=18.22 Aligned_cols=59 Identities=20% Similarity=0.341 Sum_probs=36.1
Q ss_pred HHhhccccCceEEEecCCCCHHHHHHHHHHhhcC--Cc-eEEEEcCCCcccCCccCC----cEEEEec
Q psy17637 50 LANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ--EC-RILVATDVAARGLDIPHI----RTVVNYD 110 (150)
Q Consensus 50 l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~-~vlv~T~~~~~Gidi~~~----~~vi~~~ 110 (150)
|..+|. .+.+..+-|.++...|+.+.+...+. +- -+++-++.-+.|.++... ..++++|
T Consensus 17 Ltrwl~--Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G~~~r~~vD~D 82 (86)
T PF09707_consen 17 LTRWLL--EIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLGDPRREPVDFD 82 (86)
T ss_pred hhheeE--ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeCCCCCcEEecC
Confidence 344443 33455677899999999998887752 22 244555444888887432 3355554
No 419
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=30.27 E-value=2.6e+02 Score=21.63 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=15.4
Q ss_pred EecCCCCHHHHH-------HHHHHhhcCCceEEEEcC
Q psy17637 63 LLHGDMDQSERN-------SVITKFKRQECRILVATD 92 (150)
Q Consensus 63 ~~~~~~~~~~r~-------~~~~~f~~g~~~vlv~T~ 92 (150)
.-.+.|+...|. .+-+-|++...+||+-.+
T Consensus 225 ~nts~~p~~~R~~s~yta~tiAEYfrd~G~dVll~~D 261 (369)
T cd01134 225 ANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMAD 261 (369)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 334567766664 334556554445554443
No 420
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=30.26 E-value=1.8e+02 Score=21.16 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=15.2
Q ss_pred EEEecCCCCHHHHHHHHHHhhc-CCceEEEEcCC
Q psy17637 61 VLLLHGDMDQSERNSVITKFKR-QECRILVATDV 93 (150)
Q Consensus 61 ~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~ 93 (150)
+..--|..+..+-.+..+...+ |-.-+++.++.
T Consensus 68 vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~ 101 (279)
T cd00953 68 VIFQVGSLNLEESIELARAAKSFGIYAIASLPPY 101 (279)
T ss_pred EEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 3333344444444444444443 44446665553
No 421
>PLN02417 dihydrodipicolinate synthase
Probab=30.13 E-value=2.2e+02 Score=20.74 Aligned_cols=8 Identities=13% Similarity=-0.126 Sum_probs=3.2
Q ss_pred CCCeeEEe
Q psy17637 34 VPPALMNL 41 (150)
Q Consensus 34 ~~~~ivf~ 41 (150)
+-..|+.+
T Consensus 35 Gv~Gi~~~ 42 (280)
T PLN02417 35 GAEGLIVG 42 (280)
T ss_pred CCCEEEEC
Confidence 33444443
No 422
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=29.86 E-value=2.9e+02 Score=22.12 Aligned_cols=14 Identities=7% Similarity=-0.017 Sum_probs=6.1
Q ss_pred hhhHHHHHhhcccc
Q psy17637 44 QLNAEELANSLTVK 57 (150)
Q Consensus 44 ~~~~~~l~~~L~~~ 57 (150)
++..+++.+.|...
T Consensus 194 re~~efi~~~l~~~ 207 (466)
T TIGR01040 194 METARFFKQDFEEN 207 (466)
T ss_pred hHHHHHHHHHHHhc
Confidence 34444444444433
No 423
>KOG3201|consensus
Probab=29.69 E-value=1.9e+02 Score=19.84 Aligned_cols=62 Identities=11% Similarity=0.076 Sum_probs=38.3
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhh-hHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQL-NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ 83 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~-~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 83 (150)
+.|++.|.....+.+++++|.+.+. ..+.+.+.....|+ ...++...+..--+...+-..++
T Consensus 120 ~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf-~v~l~enyde~iwqrh~~Lkk~~ 182 (201)
T KOG3201|consen 120 ESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGF-TVCLEENYDEAIWQRHGRLKKGD 182 (201)
T ss_pred HHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhcee-EEEecccHhHHHHHHHHHHhcCC
Confidence 4567777666678889999998865 45566666665664 45566666544333333333333
No 424
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=29.62 E-value=2.1e+02 Score=20.31 Aligned_cols=85 Identities=18% Similarity=0.220 Sum_probs=55.1
Q ss_pred CCCCeeEEehh------------hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc---CCceEEEEcCCCccc
Q psy17637 33 EVPPALMNLAM------------QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR---QECRILVATDVAARG 97 (150)
Q Consensus 33 ~~~~~ivf~~~------------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~vlv~T~~~~~G 97 (150)
+.+.+||+.+. ...++.|+..|+..|+.+. .+..++..+-.+.++.|.+ ....++|.. .++.|
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG 85 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVE-VKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHG 85 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEE-EeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCC
Confidence 44557777764 2348899999999998765 5667888888888888874 122333222 45566
Q ss_pred CCccCCcEEEEec-CCCChhHHHHhhc
Q psy17637 98 LDIPHIRTVVNYD-LARDIDTHTHRIG 123 (150)
Q Consensus 98 idi~~~~~vi~~~-~~~~~~~~~q~~G 123 (150)
.. +.++-.| .+-++.+..+...
T Consensus 86 ~~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 86 EE----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred CC----CEEEEecCcEEEHHHHHHhhc
Confidence 54 5666556 4556666666553
No 425
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=29.54 E-value=63 Score=17.59 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=17.8
Q ss_pred eeEEehhhhhHHHHHhhccccCceEEEecCC
Q psy17637 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGD 67 (150)
Q Consensus 37 ~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 67 (150)
.|..+++.-.++.+...|...|+.+......
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 3566777788888888888888876655443
No 426
>PF10141 ssDNA-exonuc_C: Single-strand DNA-specific exonuclease, C terminal domain; InterPro: IPR018779 This entry represents a domain found at the C terminus of a set of single-stranded DNA-specific exonucleases, including RecJ. Its function has not, as yet, been determined.
Probab=29.30 E-value=1.7e+02 Score=20.07 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=27.6
Q ss_pred CccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecC
Q psy17637 99 DIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 99 di~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
.....+.||.+|+|.+.+.+.+.. . ..+....++++...
T Consensus 48 ~~~~~~~lVl~D~P~~~~~l~~~l-~---~~~~~~Iyl~f~~~ 86 (195)
T PF10141_consen 48 EDESYDNLVLLDLPPSLEQLKELL-Q---QQQPERIYLLFYQQ 86 (195)
T ss_pred ccccCCEEEEEeCCCCHHHHHHHH-H---hCCcceEEEEECCc
Confidence 346778999999999999988877 2 23355566666443
No 427
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=29.05 E-value=1.7e+02 Score=19.27 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=5.3
Q ss_pred EEEecCCCCHH
Q psy17637 61 VLLLHGDMDQS 71 (150)
Q Consensus 61 ~~~~~~~~~~~ 71 (150)
...|||+.+++
T Consensus 68 ~l~y~GDfDp~ 78 (152)
T PF09664_consen 68 RLYYSGDFDPE 78 (152)
T ss_pred EEEEecCCCHH
Confidence 34455555443
No 428
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=29.03 E-value=3.4e+02 Score=22.54 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=8.0
Q ss_pred ChhHHHHhhccc
Q psy17637 114 DIDTHTHRIGRT 125 (150)
Q Consensus 114 ~~~~~~q~~GR~ 125 (150)
-+..++-|+||.
T Consensus 364 rLa~l~ERAG~~ 375 (591)
T TIGR01042 364 RLASFYERAGRV 375 (591)
T ss_pred HHHHHHHhccCC
Confidence 355667777776
No 429
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=28.97 E-value=2e+02 Score=21.21 Aligned_cols=7 Identities=29% Similarity=0.335 Sum_probs=2.8
Q ss_pred eEEEEcC
Q psy17637 86 RILVATD 92 (150)
Q Consensus 86 ~vlv~T~ 92 (150)
-+++.++
T Consensus 104 av~~~pP 110 (303)
T PRK03620 104 GILLLPP 110 (303)
T ss_pred EEEECCC
Confidence 3444433
No 430
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=28.63 E-value=67 Score=20.92 Aligned_cols=28 Identities=14% Similarity=0.091 Sum_probs=19.2
Q ss_pred CeeEEehhhhhHHHHHhhccccCceEEEecCC
Q psy17637 36 PALMNLAMQLNAEELANSLTVKEYDVLLLHGD 67 (150)
Q Consensus 36 ~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 67 (150)
.++|.+|.++ |.+.|...|+++..++++
T Consensus 99 ~~iVaTnD~e----Lk~rlr~~GIPvi~lr~r 126 (136)
T COG1412 99 RYIVATNDKE----LKRRLRENGIPVITLRQR 126 (136)
T ss_pred CEEEEeCCHH----HHHHHHHcCCCEEEEeCC
Confidence 5777777765 555566568887777754
No 431
>PHA02653 RNA helicase NPH-II; Provisional
Probab=28.57 E-value=2e+02 Score=24.24 Aligned_cols=69 Identities=16% Similarity=0.079 Sum_probs=41.2
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc-------cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcE
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV-------KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~-------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~ 105 (150)
...+++|-+++++-+..+...+.. .+.++...+|+++..... ...+ ...++++|..+.. .++.++.+
T Consensus 221 ~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~---t~~k--~~~Ilv~T~~L~l-~~L~~v~~ 294 (675)
T PHA02653 221 IERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELIN---TNPK--PYGLVFSTHKLTL-NKLFDYGT 294 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhh---cccC--CCCEEEEeCcccc-cccccCCE
Confidence 346899999998887776666542 245577889998731111 1111 3478899853311 24556666
Q ss_pred EE
Q psy17637 106 VV 107 (150)
Q Consensus 106 vi 107 (150)
||
T Consensus 295 VV 296 (675)
T PHA02653 295 VI 296 (675)
T ss_pred EE
Confidence 66
No 432
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=28.50 E-value=1.9e+02 Score=19.55 Aligned_cols=74 Identities=9% Similarity=0.102 Sum_probs=40.7
Q ss_pred HHHHHHHhcc-CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHH-HHHHHHhhcCCc-eEEEEcCCCcc
Q psy17637 22 HLVRNLEGAN-QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSER-NSVITKFKRQEC-RILVATDVAAR 96 (150)
Q Consensus 22 ~ll~~l~~~~-~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r-~~~~~~f~~g~~-~vlv~T~~~~~ 96 (150)
.|++.+.+.. ..+.+++|.+.- ....-+-+....+.+.+.+-+.+-+.+.. ++....+++-.. .|.|+|+...+
T Consensus 35 ~LIe~l~~Y~s~~g~~iivVFDA-~~v~g~~~~~~~~~vsvvyT~~~ETADs~IEr~~~el~~~~t~~V~VaTSD~~E 111 (173)
T COG3688 35 KLIEALAEYQSFTGYKIIVVFDA-HYVPGVGREYKNHRVSVVYTKEGETADSFIERYVAELRNAATHQVIVATSDRAE 111 (173)
T ss_pred HHHHHHHHhhcccCceEEEEEEc-cccccccccccccceEEEEecCCccHHHHHHHHHHHHhccccceEEEEeCchhh
Confidence 4666665542 234444443322 12222555555566666666655555444 555566775555 89999976654
No 433
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=28.43 E-value=2.4e+02 Score=20.66 Aligned_cols=7 Identities=29% Similarity=0.159 Sum_probs=3.0
Q ss_pred eEEEEcC
Q psy17637 86 RILVATD 92 (150)
Q Consensus 86 ~vlv~T~ 92 (150)
-+++.++
T Consensus 102 ~v~v~~P 108 (293)
T PRK04147 102 AISAVTP 108 (293)
T ss_pred EEEEeCC
Confidence 3444443
No 434
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=28.41 E-value=1.4e+02 Score=17.82 Aligned_cols=62 Identities=16% Similarity=0.287 Sum_probs=37.3
Q ss_pred CeeEEehhhh-----hHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccC-CccCCc
Q psy17637 36 PALMNLAMQL-----NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGL-DIPHIR 104 (150)
Q Consensus 36 ~~ivf~~~~~-----~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi-di~~~~ 104 (150)
++++.|++-- .+..+.+.|.+.|+.+-..|..... - .... ...+++++|..+...+ ++|-++
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e--~----~~~~-~~~D~iv~t~~~~~~~~~ip~~~ 71 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNE--I----ETYM-DGVHLICTTARVDRSFGDIPLVH 71 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHH--H----hhhc-CCCCEEEECCccccccCCCCEEE
Confidence 5788886522 2467777788888887777755332 1 1111 3457888887666555 355433
No 435
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=28.35 E-value=2.1e+02 Score=21.98 Aligned_cols=88 Identities=13% Similarity=0.121 Sum_probs=55.9
Q ss_pred EEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCc-----------cCCcEEE
Q psy17637 39 MNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDI-----------PHIRTVV 107 (150)
Q Consensus 39 vf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi-----------~~~~~vi 107 (150)
||. ++-...-+.+..........++-..|.+............++..|||+.+.-..+-++ .++.+++
T Consensus 141 V~a-t~GDl~~~~q~~~~~~~~~lyfPt~m~~~~~~~~~~~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIiv 219 (360)
T PF07429_consen 141 VFA-TRGDLAYFQQRYPRVPASLLYFPTRMDPALTLSEKNKKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIV 219 (360)
T ss_pred EEE-EcchHHHHHHHcCCCCceEEEcCCCCchhhhccccccCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEE
Confidence 343 6666666677665554455666666766543333333445677899998755443221 3567888
Q ss_pred EecCCCChhHHHHhhccccC
Q psy17637 108 NYDLARDIDTHTHRIGRTGR 127 (150)
Q Consensus 108 ~~~~~~~~~~~~q~~GR~~R 127 (150)
-++.|.+-..|++.+-+.|.
T Consensus 220 PLsYg~~n~~Yi~~V~~~~~ 239 (360)
T PF07429_consen 220 PLSYGANNQAYIQQVIQAGK 239 (360)
T ss_pred ECCCCCchHHHHHHHHHHHH
Confidence 89999888889888766554
No 436
>KOG1503|consensus
Probab=28.19 E-value=90 Score=22.62 Aligned_cols=59 Identities=8% Similarity=0.106 Sum_probs=36.1
Q ss_pred EEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCC
Q psy17637 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGD 67 (150)
Q Consensus 9 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 67 (150)
|+-++.++.....-+++.+.+........+|...+...+.....+-....+..+.+||+
T Consensus 141 ff~~pvdnlraspfllqyiqe~ipdyrnavivaksp~~akka~syaerlrlglavihge 199 (354)
T KOG1503|consen 141 FFSIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPGVAKKAQSYAERLRLGLAVIHGE 199 (354)
T ss_pred eecccccccccCHHHHHHHHHhCccccceEEEecCcchhhHHHhHHHHHhhceeEeecc
Confidence 33445555555556778887765566677888877665544333332334567889997
No 437
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=28.10 E-value=1.4e+02 Score=18.01 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=26.4
Q ss_pred ehhhhhHHHH-HhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEE
Q psy17637 41 LAMQLNAEEL-ANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVA 90 (150)
Q Consensus 41 ~~~~~~~~~l-~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 90 (150)
+.+.+.+++. .+.+.+.++.+..++..+-..-...+.+...+...+++|.
T Consensus 26 ~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~~~~~P~ii~ 76 (100)
T PRK02228 26 VPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLEESVEPTVVT 76 (100)
T ss_pred eCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHhcCCCCEEEE
Confidence 4443444433 3333566777777777765544444444455555554443
No 438
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=27.94 E-value=1.6e+02 Score=18.50 Aligned_cols=59 Identities=19% Similarity=0.418 Sum_probs=38.8
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhh------------cCCceEEEEcCCCcccCCcc
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK------------RQECRILVATDVAARGLDIP 101 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~------------~g~~~vlv~T~~~~~Gidi~ 101 (150)
..|++|-++-++..+.....+... .+++++.+.....|. ++..-||++..+.+=+.|+.
T Consensus 30 ~~P~iV~fdmk~tld~F~~q~~~~---------~lte~q~~~~~~rF~~~L~~~L~~yq~~H~~vILvspAVv~Ga~DIT 100 (112)
T TIGR02744 30 NSPVTVAFDMKQTLDAFFDSASQK---------KLSEAQQKALLGRFNALLEAELQAWQAQHHAIILVSPAVVSGAVDIT 100 (112)
T ss_pred CCCeEEEEecHHHHHHHHHHHhhc---------CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEEechhhhcCCCCCC
Confidence 456788788888777777766433 577888877777765 33445666666666556663
No 439
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=27.91 E-value=89 Score=23.27 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHhhcCCceEEEEcCCCcc
Q psy17637 69 DQSERNSVITKFKRQECRILVATDVAAR 96 (150)
Q Consensus 69 ~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 96 (150)
++++|+.+++.+++|.++++|+|+....
T Consensus 219 ~~~d~~~L~~~l~~G~id~~i~SDHaP~ 246 (335)
T cd01294 219 RPEDREALRKAATSGHPKFFLGSDSAPH 246 (335)
T ss_pred CHHHHHHHHHHHHcCCCCeEEECCCCCC
Confidence 4788999999999999999899987644
No 440
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=27.87 E-value=2.5e+02 Score=20.61 Aligned_cols=27 Identities=11% Similarity=-0.028 Sum_probs=11.2
Q ss_pred CCCCHHHHHHHHHHhhc-CCceEEEEcC
Q psy17637 66 GDMDQSERNSVITKFKR-QECRILVATD 92 (150)
Q Consensus 66 ~~~~~~~r~~~~~~f~~-g~~~vlv~T~ 92 (150)
|..+.++-.+..+...+ |---+++.++
T Consensus 78 ~~~~t~~~i~la~~a~~~Gad~v~v~~P 105 (290)
T TIGR00683 78 GSVNLKEAVELGKYATELGYDCLSAVTP 105 (290)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 44444444443343333 3334555443
No 441
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=27.75 E-value=1.9e+02 Score=19.82 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=20.3
Q ss_pred CCeeEEehhh-----hhHHHHHhhccccCceEEEec
Q psy17637 35 PPALMNLAMQ-----LNAEELANSLTVKEYDVLLLH 65 (150)
Q Consensus 35 ~~~ivf~~~~-----~~~~~l~~~L~~~~~~~~~~~ 65 (150)
.++|||+.+. ....++++.|++.++.+..+.
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~ 143 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIIN 143 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 4667777664 345566777777777766555
No 442
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=27.62 E-value=2.6e+02 Score=20.82 Aligned_cols=67 Identities=7% Similarity=0.140 Sum_probs=49.7
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPH 102 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~ 102 (150)
.-.-.+||++-...++.+.+.+.....-+.+++.+.|..+-.++.+..+... -.|+..++- |+-.|.
T Consensus 65 ~a~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g-~~iiGPncp--GiI~Pg 131 (293)
T COG0074 65 GANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG-TRLIGPNCP--GIITPG 131 (293)
T ss_pred CCCEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC-CEEECCCCC--ccCcCC
Confidence 4556899999999999999998766667889999999988888888887654 334444333 444444
No 443
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=27.51 E-value=2.1e+02 Score=24.04 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=28.0
Q ss_pred hhhHHHHHhhccccCceEEEecC--------------------CCCHHHHHHHHHHhhcC
Q psy17637 44 QLNAEELANSLTVKEYDVLLLHG--------------------DMDQSERNSVITKFKRQ 83 (150)
Q Consensus 44 ~~~~~~l~~~L~~~~~~~~~~~~--------------------~~~~~~r~~~~~~f~~g 83 (150)
+..+.+.-+.|+..|+++..++| .++|+++.++++.++..
T Consensus 443 R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~~PedK~~iV~~lQ~~ 502 (673)
T PRK14010 443 KDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAECKPEDKINVIREEQAK 502 (673)
T ss_pred cHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCCCHHHHHHHHHHHHhC
Confidence 34455555666666666555555 48999999999999864
No 444
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=27.44 E-value=1e+02 Score=19.35 Aligned_cols=59 Identities=10% Similarity=0.065 Sum_probs=39.8
Q ss_pred CeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCcc
Q psy17637 36 PALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIP 101 (150)
Q Consensus 36 ~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 101 (150)
.++++..+.+++..+.+...+.+.++.+.-++.+.. ......-.++|.+..+..-+.+.
T Consensus 2 ~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~-------~~~~~~~~ivi~~~~l~~i~~id 60 (139)
T PF01565_consen 2 AAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWT-------GQSSDEGGIVIDMSRLNKIIEID 60 (139)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSS-------STTSSTTEEEEECTTCGCEEEEE
T ss_pred cEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc-------cccccCCcEEEeecccccccccc
Confidence 578888999999999998888899888888775421 11112346788886554434443
No 445
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=27.37 E-value=70 Score=19.40 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=19.9
Q ss_pred CCCCeeEEeh-hhh----hHHHHHhhccc-----cCceEEEecCCCC
Q psy17637 33 EVPPALMNLA-MQL----NAEELANSLTV-----KEYDVLLLHGDMD 69 (150)
Q Consensus 33 ~~~~~ivf~~-~~~----~~~~l~~~L~~-----~~~~~~~~~~~~~ 69 (150)
+..++++||. +.. .+..+.+.|.. ...++..+.||+.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~ 107 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFN 107 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHH
Confidence 3457888986 322 23333333321 2345788888863
No 446
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=27.19 E-value=86 Score=21.91 Aligned_cols=38 Identities=8% Similarity=-0.161 Sum_probs=28.9
Q ss_pred eEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhh
Q psy17637 8 AYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQL 45 (150)
Q Consensus 8 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~ 45 (150)
.+++..+...-+...|++.+.+....+.+++||.+..+
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 44455555555666899999988889999999997655
No 447
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=27.07 E-value=1.5e+02 Score=17.74 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=32.4
Q ss_pred HHhhccccCceEEEecCCCCHHHHHHHHHHhhcC---C-ceEEEEcCCCcccCCcc
Q psy17637 50 LANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ---E-CRILVATDVAARGLDIP 101 (150)
Q Consensus 50 l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~-~~vlv~T~~~~~Gidi~ 101 (150)
|+.+|. .+.+..+-|.++...|+.+.+...+. + .-+++-++.-+.|.++.
T Consensus 17 Lt~wll--Ev~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~ 70 (87)
T TIGR01873 17 LALWLL--EPRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFF 70 (87)
T ss_pred hhhhee--ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEE
Confidence 444444 33455677899999999888776553 1 23555556667787764
No 448
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=26.88 E-value=2.1e+02 Score=19.51 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=30.2
Q ss_pred HHHHHHHhccCC-CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHH
Q psy17637 22 HLVRNLEGANQE-VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSV 76 (150)
Q Consensus 22 ~ll~~l~~~~~~-~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 76 (150)
.....+...... ...+.||++.. .+++.+.....+.....+||.-+...-..+
T Consensus 38 ~~a~~l~~~~~~~~~~V~v~vn~~--~~~i~~ia~~~~~d~Vqlhg~e~~~~~~~l 91 (203)
T cd00405 38 EQAREIVAALPPFVKRVGVFVNED--LEEILEIAEELGLDVVQLHGDESPEYCAQL 91 (203)
T ss_pred HHHHHHHHhCCCCCcEEEEEeCCC--HHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence 444555444222 35788888763 444444444456777889988655443333
No 449
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=26.81 E-value=3.8e+02 Score=22.44 Aligned_cols=73 Identities=8% Similarity=0.004 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEc-CCCc
Q psy17637 17 KEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT-DVAA 95 (150)
Q Consensus 17 ~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~ 95 (150)
...+..+...+... ....++|+.+++.+-.+.+.+.+...+... ..+..+. ........+....|+|+| +.+.
T Consensus 277 T~t~~~la~~l~~~-~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~--~~~~~s~---~~L~~~l~~~~~~iivtTiQk~~ 350 (667)
T TIGR00348 277 TLTMLFAARKALEL-LKNPKVFFVVDRRELDYQLMKEFQSLQKDC--AERIESI---AELKRLLEKDDGGIIITTIQKFD 350 (667)
T ss_pred cHHHHHHHHHHHhh-cCCCeEEEEECcHHHHHHHHHHHHhhCCCC--CcccCCH---HHHHHHHhCCCCCEEEEEhHHhh
Confidence 33444455555443 355678888888888888877776554321 1111122 222233444456788888 4443
No 450
>KOG0372|consensus
Probab=26.57 E-value=61 Score=23.61 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=23.1
Q ss_pred hhHHHHHhhcccc---CceEEEecCCCCHHHH----HHHHHHhh
Q psy17637 45 LNAEELANSLTVK---EYDVLLLHGDMDQSER----NSVITKFK 81 (150)
Q Consensus 45 ~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r----~~~~~~f~ 81 (150)
+.+.++..+|.-. .-++.++|||++|.-. -..+++++
T Consensus 137 r~c~eiFdyL~l~aiid~kifCVHGGlSP~i~~lDqIr~lDR~~ 180 (303)
T KOG0372|consen 137 RYCTEIFDYLSLAAIIDGKIFCVHGGLSPSIQTLDQIRVLDRKQ 180 (303)
T ss_pred HHHHHHHHhhhHhheecCcEEEEcCCCCcchhhHHHHHHhhccc
Confidence 3455666655432 4469999999988654 34445554
No 451
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.54 E-value=1e+02 Score=17.26 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=16.7
Q ss_pred CeeEEehhhhhHHHHHhhccccCceE
Q psy17637 36 PALMNLAMQLNAEELANSLTVKEYDV 61 (150)
Q Consensus 36 ~~ivf~~~~~~~~~l~~~L~~~~~~~ 61 (150)
..+|.++|..++-...+.|+..++++
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 34555666666777777777776653
No 452
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=26.46 E-value=3.3e+02 Score=21.61 Aligned_cols=69 Identities=12% Similarity=0.048 Sum_probs=35.0
Q ss_pred HHHHHHHhccCCCCCeeEEehh---hhhHHHHHhhccccCc--eEEEec--CCCCHHHHH-------HHHHHhhcCC-ce
Q psy17637 22 HLVRNLEGANQEVPPALMNLAM---QLNAEELANSLTVKEY--DVLLLH--GDMDQSERN-------SVITKFKRQE-CR 86 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~---~~~~~~l~~~L~~~~~--~~~~~~--~~~~~~~r~-------~~~~~f~~g~-~~ 86 (150)
.|+..+.+. ....++||+.- .+++.++.+.+...+. +...+. ...++-+|. .+-+-|++.. .+
T Consensus 155 ~L~~~ia~~--~~~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~AltiAEyfrd~g~~~ 232 (436)
T PRK02118 155 ALLARIALQ--AEADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEKFALEGKKK 232 (436)
T ss_pred HHHHHHHHh--hCCCeEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 456666555 22246788744 3345555555554432 233333 445555553 3445566543 56
Q ss_pred EEEEcC
Q psy17637 87 ILVATD 92 (150)
Q Consensus 87 vlv~T~ 92 (150)
||+--+
T Consensus 233 VLli~D 238 (436)
T PRK02118 233 VLVLLT 238 (436)
T ss_pred EEEecc
Confidence 664443
No 453
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=26.44 E-value=81 Score=19.01 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=18.2
Q ss_pred HHHHHHHhccCCCCCeeEEehhh-hhHHHHHhhccccCce
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQ-LNAEELANSLTVKEYD 60 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~-~~~~~l~~~L~~~~~~ 60 (150)
+.++.+... +.++++.+|+- ...+.+.+.|...|+.
T Consensus 21 e~l~~L~~~---g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 21 EALDALRER---GKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHHT---TSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHHc---CCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 444444442 45555555553 3335666666666554
No 454
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=26.36 E-value=1.7e+02 Score=19.41 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=22.7
Q ss_pred hHHHHHhhccccCceEEEecCC-----------CCHHHHHHHHHHhh
Q psy17637 46 NAEELANSLTVKEYDVLLLHGD-----------MDQSERNSVITKFK 81 (150)
Q Consensus 46 ~~~~l~~~L~~~~~~~~~~~~~-----------~~~~~r~~~~~~f~ 81 (150)
-+..|...|...+.++..+.|+ .+.++|.+.++++.
T Consensus 18 lA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~ 64 (156)
T PF01583_consen 18 LARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIA 64 (156)
T ss_dssp HHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHH
Confidence 3556666666667777777653 56778877766653
No 455
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=26.26 E-value=1.6e+02 Score=18.00 Aligned_cols=69 Identities=10% Similarity=-0.001 Sum_probs=35.8
Q ss_pred chhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEe--cCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 15 KDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLL--HGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 15 ~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.++..+..+.+.|... ..=||+ |...++.| ...|+.+-.+ ..+.+......+.+.+++|++.++|.|.
T Consensus 10 ~dk~~~~~~a~~l~~~-----G~~i~a-T~gTa~~L----~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~ 79 (116)
T cd01423 10 YSKPELLPTAQKLSKL-----GYKLYA-TEGTADFL----LENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLP 79 (116)
T ss_pred ccchhHHHHHHHHHHC-----CCEEEE-ccHHHHHH----HHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECC
Confidence 3444445666666554 223443 33444444 3445544333 1121111225677888889999888875
Q ss_pred C
Q psy17637 93 V 93 (150)
Q Consensus 93 ~ 93 (150)
.
T Consensus 80 ~ 80 (116)
T cd01423 80 S 80 (116)
T ss_pred C
Confidence 4
No 456
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=26.24 E-value=2.2e+02 Score=22.42 Aligned_cols=50 Identities=12% Similarity=-0.049 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCC
Q psy17637 17 KEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGD 67 (150)
Q Consensus 17 ~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 67 (150)
.+....+.+.+.+. .+....|+--...+..+.+.+.++..|+++.....+
T Consensus 244 eei~l~~~~~l~~~-~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 244 EEIILDAHQALKKQ-FPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred HHHHHHHHHHHHhh-CCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 33333344444443 222233333344555556666665555555544443
No 457
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=26.23 E-value=3.5e+02 Score=21.87 Aligned_cols=12 Identities=8% Similarity=0.044 Sum_probs=7.3
Q ss_pred hhHHHHhhcccc
Q psy17637 115 IDTHTHRIGRTG 126 (150)
Q Consensus 115 ~~~~~q~~GR~~ 126 (150)
....+.|+|+..
T Consensus 293 ~srLlERag~~~ 304 (501)
T TIGR00962 293 HSRLLERAAKLN 304 (501)
T ss_pred HHHHHHHHhhcc
Confidence 445567777753
No 458
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=25.91 E-value=3e+02 Score=20.96 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=35.7
Q ss_pred CCeeEEehh--hh---hHHHHHhhccccCceEEEecC---CCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 35 PPALMNLAM--QL---NAEELANSLTVKEYDVLLLHG---DMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 35 ~~~ivf~~~--~~---~~~~l~~~L~~~~~~~~~~~~---~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
.+++|.+.. .+ ..+.+...|...++.+..+.+ ..+.+.-.+..+.+++...+.+|+-
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIav 88 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIAL 88 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 456666542 22 336777777777777665554 3455556677777777777777665
No 459
>KOG1002|consensus
Probab=25.73 E-value=2.7e+02 Score=22.87 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=40.3
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhc--cccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSL--TVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L--~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
+.+..+... ....|+||.+++..-.+.+-+.- .....++..|||.- |...++.+.+ ..++++|.
T Consensus 220 QtIaLllae-~~ra~tLVvaP~VAlmQW~nEI~~~T~gslkv~~YhG~~----R~~nikel~~--YDvVLTty 285 (791)
T KOG1002|consen 220 QTIALLLAE-VDRAPTLVVAPTVALMQWKNEIERHTSGSLKVYIYHGAK----RDKNIKELMN--YDVVLTTY 285 (791)
T ss_pred HHHHHHHhc-cccCCeeEEccHHHHHHHHHHHHHhccCceEEEEEeccc----ccCCHHHhhc--CcEEEEec
Confidence 444444443 46678999999988766554432 23567899999973 4444555553 35666664
No 460
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=25.58 E-value=2.4e+02 Score=19.62 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=44.5
Q ss_pred HHHHhhccc-cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCccc--CCccCCcEEEEecCCCChhHHHHhh-c
Q psy17637 48 EELANSLTV-KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG--LDIPHIRTVVNYDLARDIDTHTHRI-G 123 (150)
Q Consensus 48 ~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G--idi~~~~~vi~~~~~~~~~~~~q~~-G 123 (150)
+++...+.. .-+.-+.+||..=-.-+..+.+....|..-+|--.=-...- -.+| +.+..|-.|.|.+.+..|. |
T Consensus 57 ~EF~~~i~~~~fLE~a~~~gnyYGT~~~~ve~~~~~G~~vildId~qGa~qvk~~~p--~~v~IFi~pPs~eeL~~RL~~ 134 (191)
T COG0194 57 EEFEELIERDEFLEWAEYHGNYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMP--NAVSIFILPPSLEELERRLKG 134 (191)
T ss_pred HHHHHHHhcCCcEEEEEEcCCcccCcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCC--CeEEEEEcCCCHHHHHHHHHc
Confidence 344444432 34567778876544456677777888875555332111111 1234 6788888888999988875 4
Q ss_pred c
Q psy17637 124 R 124 (150)
Q Consensus 124 R 124 (150)
|
T Consensus 135 R 135 (191)
T COG0194 135 R 135 (191)
T ss_pred c
Confidence 4
No 461
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=25.33 E-value=2.7e+02 Score=20.16 Aligned_cols=6 Identities=50% Similarity=0.473 Sum_probs=2.7
Q ss_pred EEEEcC
Q psy17637 87 ILVATD 92 (150)
Q Consensus 87 vlv~T~ 92 (150)
|++..+
T Consensus 99 v~~~~P 104 (284)
T cd00950 99 ALVVTP 104 (284)
T ss_pred EEEccc
Confidence 444443
No 462
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=25.21 E-value=39 Score=24.32 Aligned_cols=39 Identities=10% Similarity=-0.010 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCce
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYD 60 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~ 60 (150)
.+..+...| + .++..+.+|+++.+++..+.+.|.+.++.
T Consensus 127 ~i~~~~~~L-~--~~gG~i~~fsP~ieQv~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 127 AIPHAKRAL-K--KPGGRICCFSPCIEQVQKTVEALREHGFT 165 (247)
T ss_dssp GHHHHHHHE----EEEEEEEEEESSHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHH-h--cCCceEEEECCCHHHHHHHHHHHHHCCCe
Confidence 344444444 1 36778999999999999999999876643
No 463
>KOG1502|consensus
Probab=25.15 E-value=3.1e+02 Score=20.83 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=46.7
Q ss_pred hhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCce-EEEEcCCCcccC-C--ccCCcEEEEecCCCCh
Q psy17637 42 AMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECR-ILVATDVAARGL-D--IPHIRTVVNYDLARDI 115 (150)
Q Consensus 42 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-vlv~T~~~~~Gi-d--i~~~~~vi~~~~~~~~ 115 (150)
.+---+-.+.+.|..+|+.+.-.--....++..+.+.++...+-+ -++--+....|- + +.+|+.|+|...|...
T Consensus 14 AsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~Asp~~~ 91 (327)
T KOG1502|consen 14 ASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHTASPVDF 91 (327)
T ss_pred CchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEeCccCCC
Confidence 334456677888888899876555555555566678888854432 223334444332 2 4689999998888644
No 464
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=24.92 E-value=3.4e+02 Score=21.20 Aligned_cols=55 Identities=13% Similarity=0.220 Sum_probs=37.8
Q ss_pred hhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCC
Q psy17637 42 AMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLD 99 (150)
Q Consensus 42 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 99 (150)
+|...++.+++-|.+.|+.+..+.=... +..++++...+.+ -++|+++....+..
T Consensus 259 ~T~~ma~aiaegl~~~gv~v~~~~~~~~--~~~eI~~~i~~a~-~~vvGsPT~~~~~~ 313 (388)
T COG0426 259 NTEKMAQAIAEGLMKEGVDVEVINLEDA--DPSEIVEEILDAK-GLVVGSPTINGGAH 313 (388)
T ss_pred CHHHHHHHHHHHhhhcCCceEEEEcccC--CHHHHHHHHhhcc-eEEEecCcccCCCC
Confidence 5678889999999999988776654432 5666666665543 57788876644443
No 465
>KOG1180|consensus
Probab=24.83 E-value=4.1e+02 Score=22.15 Aligned_cols=75 Identities=7% Similarity=0.080 Sum_probs=48.5
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCC-ccc----CCccCCcEEEE
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVA-ARG----LDIPHIRTVVN 108 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~-~~G----idi~~~~~vi~ 108 (150)
..++.||+.|++.=-..+......+++++..+..+-.+ -++-.+.+-+...+++.+.+ ..- -..+.+.+||+
T Consensus 115 e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGee---al~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~ 191 (678)
T KOG1180|consen 115 ETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEE---ALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIY 191 (678)
T ss_pred CCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChh---hhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEE
Confidence 44599999998866666666677899999999887653 23334444445566665322 211 23467778888
Q ss_pred ecC
Q psy17637 109 YDL 111 (150)
Q Consensus 109 ~~~ 111 (150)
+++
T Consensus 192 ~d~ 194 (678)
T KOG1180|consen 192 FDP 194 (678)
T ss_pred ecC
Confidence 874
No 466
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=24.79 E-value=1.2e+02 Score=22.15 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=18.8
Q ss_pred CeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehh
Q psy17637 6 GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAM 43 (150)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~ 43 (150)
+...+.++..+..-+..|++.|.. ...+.||||..
T Consensus 113 glrLVEV~k~dl~~Lp~l~~~Lr~---~~~kFIlFcDD 147 (287)
T COG2607 113 GLRLVEVDKEDLATLPDLVELLRA---RPEKFILFCDD 147 (287)
T ss_pred CCeEEEEcHHHHhhHHHHHHHHhc---CCceEEEEecC
Confidence 334444444555545555555544 35567777754
No 467
>PRK13019 clpS ATP-dependent Clp protease adaptor; Reviewed
Probab=24.57 E-value=1.7e+02 Score=17.66 Aligned_cols=27 Identities=19% Similarity=0.030 Sum_probs=18.9
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCc
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEY 59 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~ 59 (150)
..++++++..+.+.+|..+..+...|+
T Consensus 62 ~~G~avv~~~~~E~AE~~~~~l~~~gl 88 (94)
T PRK13019 62 KEGSAVVWVGPLEQAELYHQQLTDAGL 88 (94)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHHccc
Confidence 356777777777777777777766653
No 468
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=24.55 E-value=2.2e+02 Score=18.96 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=24.4
Q ss_pred HHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHh
Q psy17637 74 NSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHR 121 (150)
Q Consensus 74 ~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~ 121 (150)
..+++.++.= ..+|++|-.+ |+|+++.+.=|.+..+ +...|.|.
T Consensus 7 ~~i~~~L~~~-~PiL~GTiPi--~Idi~~SDLDIic~~~-d~~~F~~~ 50 (152)
T PF14091_consen 7 LGILEKLAAY-DPILVGTIPI--GIDIPGSDLDIICEVP-DPEAFEQL 50 (152)
T ss_pred hhHHHHhhcC-CCEEeccccc--ccCCCCCCccEEEEeC-CHHHHHHH
Confidence 3444444432 4799999877 6777655443333333 35555544
No 469
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=24.44 E-value=2.2e+02 Score=19.91 Aligned_cols=50 Identities=12% Similarity=0.044 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHhccCCCCCeeEEehhhh----hHHHHHhhccccCceEEEecCC
Q psy17637 17 KEFAGHLVRNLEGANQEVPPALMNLAMQL----NAEELANSLTVKEYDVLLLHGD 67 (150)
Q Consensus 17 ~~~~~~ll~~l~~~~~~~~~~ivf~~~~~----~~~~l~~~L~~~~~~~~~~~~~ 67 (150)
.....+|++.+... ....+.|+++...- .+..|.+.|++.|+++..-+++
T Consensus 55 ~~~~~~I~~~i~~~-~~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETng 108 (212)
T COG0602 55 PMSADEILADIKSL-GYKARGVSLTGGEPLLQPNLLELLELLKRLGFRIALETNG 108 (212)
T ss_pred ccCHHHHHHHHHhc-CCCcceEEEeCCcCCCcccHHHHHHHHHhCCceEEecCCC
Confidence 34566788888875 23344788887755 6788888888888888877744
No 470
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=24.01 E-value=2.1e+02 Score=18.46 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=26.1
Q ss_pred hHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEE
Q psy17637 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVA 90 (150)
Q Consensus 46 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 90 (150)
.++++.+.|.....-+.+-+.+++..+..++-..++.....+.|.
T Consensus 6 ~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~ 50 (155)
T cd00379 6 LVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLKVG 50 (155)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEE
Confidence 345555666555544555556677777777766666554444443
No 471
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=23.90 E-value=2e+02 Score=20.95 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=27.4
Q ss_pred cchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcc
Q psy17637 14 DKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLT 55 (150)
Q Consensus 14 ~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~ 55 (150)
.+....+..-.+.+... ...+..|+|+.|++.+.+.....-
T Consensus 44 ~kT~~~l~~A~~~v~~~-~~~~g~ILfVgTK~~a~~~V~~~A 84 (252)
T COG0052 44 QKTLERLREAYKFLRRI-AANGGKILFVGTKKQAQEPVKEFA 84 (252)
T ss_pred HHHHHHHHHHHHHHHHH-HcCCCEEEEEechHHHHHHHHHHH
Confidence 34445555566666665 555778999999998876655543
No 472
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=23.79 E-value=40 Score=19.14 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=9.4
Q ss_pred ChhHHHHhhcc-ccC
Q psy17637 114 DIDTHTHRIGR-TGR 127 (150)
Q Consensus 114 ~~~~~~q~~GR-~~R 127 (150)
+.+++.||.|+ .||
T Consensus 31 ~~~Ei~Qr~GkkiGR 45 (70)
T PF04210_consen 31 TNAEIAQRAGKKIGR 45 (70)
T ss_pred HHHHHHHHHhHHhhh
Confidence 35677788877 454
No 473
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=23.61 E-value=1.8e+02 Score=17.71 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=36.8
Q ss_pred eecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc-CCceEEEE
Q psy17637 12 VTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR-QECRILVA 90 (150)
Q Consensus 12 ~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~ 90 (150)
....++..+..+...+... ..=+|+ |.-.+ +.|++.|+++..+...-. ....++.+.+++ |++.++|.
T Consensus 6 v~d~~K~~~~~~a~~l~~~-----G~~i~A-T~gTa----~~L~~~Gi~~~~v~~~~~-~g~~~i~~~i~~~g~idlVIn 74 (112)
T cd00532 6 VSDHVKAMLVDLAPKLSSD-----GFPLFA-TGGTS----RVLADAGIPVRAVSKRHE-DGEPTVDAAIAEKGKFDVVIN 74 (112)
T ss_pred EEcccHHHHHHHHHHHHHC-----CCEEEE-CcHHH----HHHHHcCCceEEEEecCC-CCCcHHHHHHhCCCCEEEEEE
Confidence 3333445444555555533 222333 22333 344456776554432100 012567888889 99988888
Q ss_pred cCC
Q psy17637 91 TDV 93 (150)
Q Consensus 91 T~~ 93 (150)
|..
T Consensus 75 ~~~ 77 (112)
T cd00532 75 LRD 77 (112)
T ss_pred cCC
Confidence 753
No 474
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=23.60 E-value=1.4e+02 Score=16.34 Aligned_cols=53 Identities=6% Similarity=-0.028 Sum_probs=31.0
Q ss_pred CeeEEehh-hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEE
Q psy17637 36 PALMNLAM-QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRIL 88 (150)
Q Consensus 36 ~~ivf~~~-~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 88 (150)
++.+|+.. =..|..+...|...+++...+.=...+..+..+.+.-..+..+.+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v 55 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQI 55 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 34555543 345777888888888877766655555555555444333333433
No 475
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=23.58 E-value=1.7e+02 Score=17.30 Aligned_cols=36 Identities=14% Similarity=0.296 Sum_probs=17.5
Q ss_pred HHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc
Q psy17637 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82 (150)
Q Consensus 47 ~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 82 (150)
++++.+.|.....-+.+-+.+++..+-.++-..++.
T Consensus 10 v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~ 45 (100)
T PF00466_consen 10 VEELKELLKKSKYVIVVDYNGLSANQLQELRKELRK 45 (100)
T ss_dssp HHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 344444444444334444455555555555555554
No 476
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=23.01 E-value=2.8e+02 Score=19.64 Aligned_cols=71 Identities=17% Similarity=0.113 Sum_probs=39.6
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEE---ecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLL---LHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
..++..+...... .+-+.+..+....+.+.+.|...|..+.. |...............+..+.+.+++-|+
T Consensus 110 ~~l~~~l~~~~~~-~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS 183 (248)
T COG1587 110 EGLLEELPELLKG-GKRVLILRGNGGREVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFTS 183 (248)
T ss_pred HHHHHHhhhhccC-CCeEEEEcCCCchHHHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEEeC
Confidence 3666777665333 34445555545557888888887765432 22222222234445567777777666554
No 477
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=22.94 E-value=4.1e+02 Score=21.52 Aligned_cols=11 Identities=9% Similarity=0.036 Sum_probs=6.0
Q ss_pred hhHHHHhhccc
Q psy17637 115 IDTHTHRIGRT 125 (150)
Q Consensus 115 ~~~~~q~~GR~ 125 (150)
...++.|+|+.
T Consensus 294 ~srLlERAg~~ 304 (502)
T PRK13343 294 HSRLLERAAKL 304 (502)
T ss_pred hHHHHHhhccC
Confidence 34455666664
No 478
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=22.92 E-value=3.5e+02 Score=20.60 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=37.6
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhh
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 81 (150)
.++..+.+. ....+||.-+.........+.|+..|+.+..+-|.-..+.-+++...|+
T Consensus 66 s~~~eI~~l--npd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~ 123 (337)
T COG2247 66 SVLDEIIEL--NPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFR 123 (337)
T ss_pred HHHHHHHhh--CCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHH
Confidence 455555555 4556777777777777777777777777766666655555555555554
No 479
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=22.85 E-value=3.5e+02 Score=20.62 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=40.8
Q ss_pred HHHHHHHhccCCCCCeeEEehh--hh--hHHHHHhhccccCceEEEecC---CCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 22 HLVRNLEGANQEVPPALMNLAM--QL--NAEELANSLTVKEYDVLLLHG---DMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~--~~--~~~~l~~~L~~~~~~~~~~~~---~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
.+-+.+... ...+++|++.. .+ ..+.+.+.|...++.+..+.+ ..+.+.-.+..+.++....+++|+-
T Consensus 13 ~l~~~~~~~--~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIai 87 (375)
T cd08194 13 ETGAVLADL--GGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIAL 87 (375)
T ss_pred HHHHHHHHc--CCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 444444432 23466666643 11 356777788777776655543 4455566777778877777777764
No 480
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=22.72 E-value=2e+02 Score=19.58 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=8.1
Q ss_pred HHhhccccCceEEEecCCCC
Q psy17637 50 LANSLTVKEYDVLLLHGDMD 69 (150)
Q Consensus 50 l~~~L~~~~~~~~~~~~~~~ 69 (150)
|...|+..+++-..+.|-.+
T Consensus 129 L~~~L~~~~i~~lii~G~~t 148 (196)
T cd01011 129 LAEYLRERGIDRVDVVGLAT 148 (196)
T ss_pred HHHHHHHCCCCEEEEEEecc
Confidence 33333334444444444433
No 481
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=22.65 E-value=63 Score=18.13 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=19.8
Q ss_pred CCCeeEEehhhhhHHHHHhhccc
Q psy17637 34 VPPALMNLAMQLNAEELANSLTV 56 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~ 56 (150)
...++|.|.+.+.++.+.+.|++
T Consensus 47 dDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 47 DDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp SSEEEEEESTTSHHHHHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHh
Confidence 57799999999999999988753
No 482
>KOG0386|consensus
Probab=22.51 E-value=2.4e+02 Score=25.16 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=37.4
Q ss_pred CCCCCeeEEehhhhhH---HHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 32 QEVPPALMNLAMQLNA---EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~---~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
...+|.+|.++.---. .++..+. ..+....+.| ++.+|.......+.|+++||++|-
T Consensus 442 ~~~GP~LvivPlstL~NW~~Ef~kWa--PSv~~i~YkG--tp~~R~~l~~qir~gKFnVLlTty 501 (1157)
T KOG0386|consen 442 QMQGPFLIIVPLSTLVNWSSEFPKWA--PSVQKIQYKG--TPQQRSGLTKQQRHGKFNVLLTTY 501 (1157)
T ss_pred ccCCCeEEeccccccCCchhhccccc--cceeeeeeeC--CHHHHhhHHHHHhcccceeeeeeH
Confidence 4567888888763321 1222221 2333444445 488999999999999999999994
No 483
>KOG1137|consensus
Probab=22.50 E-value=2.8e+02 Score=22.88 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=27.8
Q ss_pred CceEEEecCCCCHHHH--HHHHHHhhcCCceEEEEcCC
Q psy17637 58 EYDVLLLHGDMDQSER--NSVITKFKRQECRILVATDV 93 (150)
Q Consensus 58 ~~~~~~~~~~~~~~~r--~~~~~~f~~g~~~vlv~T~~ 93 (150)
+....++||+++.-.| ..++..|++|+..+-|.|..
T Consensus 413 ~~~lilVHGE~neM~rLKs~L~~~f~d~kv~i~v~tpr 450 (668)
T KOG1137|consen 413 PPHLILVHGEANEMMRLKSALEAAFRDGKVPIDVSTPR 450 (668)
T ss_pred CCeEEEEecccchhHHHHHHHHHHhccCCCcceecCCc
Confidence 5568899999887666 45678999998888777743
No 484
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=22.46 E-value=3.8e+02 Score=20.85 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=34.1
Q ss_pred CCeeEEehh--hh--hHHHHHhhccccCceEEEecC---CCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 35 PPALMNLAM--QL--NAEELANSLTVKEYDVLLLHG---DMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 35 ~~~ivf~~~--~~--~~~~l~~~L~~~~~~~~~~~~---~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
.+++|.+.. .+ ..+.+...|...++.+..+.+ ..+-+.-.+..+.+++...+++|+-
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIai 87 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAV 87 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 466666543 11 246677777766766655543 3445555666777777667777665
No 485
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=22.37 E-value=1.8e+02 Score=18.27 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=15.1
Q ss_pred hhhhhHHHHHhhccccCceEEEec
Q psy17637 42 AMQLNAEELANSLTVKEYDVLLLH 65 (150)
Q Consensus 42 ~~~~~~~~l~~~L~~~~~~~~~~~ 65 (150)
+|...++.|++.|...++.+..+.
T Consensus 9 ~te~~A~~ia~~l~~~g~~~~~~~ 32 (143)
T PF00258_consen 9 NTEKMAEAIAEGLRERGVEVRVVD 32 (143)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHHHHHHHHHHHHHcCCceeeec
Confidence 456667777777776666544443
No 486
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=22.37 E-value=3.4e+02 Score=20.37 Aligned_cols=50 Identities=20% Similarity=0.079 Sum_probs=25.3
Q ss_pred hhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 42 AMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 42 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
++.+.++++.+.++..+..+..--||-+.-+--+.+.... +..-|.|.|.
T Consensus 60 p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-~~p~i~VPTT 109 (347)
T cd08172 60 CSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-GVPVITVPTL 109 (347)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-CCCEEEecCc
Confidence 5555666666666555555555455544444444444332 3333455554
No 487
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.19 E-value=2.2e+02 Score=19.31 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=31.5
Q ss_pred HHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCc
Q psy17637 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAA 95 (150)
Q Consensus 49 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 95 (150)
.|..+|+..++....+.|-.+...-........+...++++.+++..
T Consensus 123 ~L~~~Lr~~~i~~l~v~G~~td~CV~~T~~~A~~~gy~v~v~~da~~ 169 (205)
T COG1335 123 DLDDILRNLGIDTVVVCGIATDICVLATARDAFDLGYQVTLVEDATA 169 (205)
T ss_pred CHHHHHHHCCCCEEEEeeeehhHHHHHHHHHHHHCCCeEEEehhhcc
Confidence 46667777788888888887766666666555555566666665553
No 488
>PF09010 AsiA: Anti-Sigma Factor A; InterPro: IPR015100 Anti-sigma factor A is a transcriptional inhibitor that inhibits sigma 70-directed transcription by weakening its interaction with the core of the host's RNA polymerase. It is an all-helical protein, composed of six helical segments and intervening loops and turns, as well as a helix-turn-helix DNA binding motif, although neither free anti-sigma factor nor anti-sigma factor bound to sigma-70 has been shown to interact directly with DNA. In solution, the protein forms a symmetric dimer of small (10.59 kDa) protomers, which are composed of helix and coil regions and are devoid of beta-strand/sheet secondary structural elements []. ; PDB: 1TKV_A 1JR5_B 1TLH_A 1TL6_A.
Probab=22.02 E-value=43 Score=20.08 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=15.7
Q ss_pred cCCCCHHHHHHHHHHhhcCC
Q psy17637 65 HGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 65 ~~~~~~~~r~~~~~~f~~g~ 84 (150)
.+.+++++|+++++.|..|.
T Consensus 59 ~~~lt~~ek~elieeFn~G~ 78 (91)
T PF09010_consen 59 FKRLTQEEKEELIEEFNEGH 78 (91)
T ss_dssp HHTS-HHHHHHHHHHSHHHH
T ss_pred HHHcCHHHHHHHHHHHhhhh
Confidence 35689999999999998763
No 489
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=21.94 E-value=2.5e+02 Score=18.57 Aligned_cols=41 Identities=7% Similarity=0.014 Sum_probs=20.3
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEE
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVL 62 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~ 62 (150)
.++..+.+..++++.++++..+......+...|...|+...
T Consensus 121 ~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 121 RFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYE 161 (179)
T ss_pred HHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEE
Confidence 34444444434445544444444445566666655555443
No 490
>PRK10824 glutaredoxin-4; Provisional
Probab=21.93 E-value=2.2e+02 Score=17.88 Aligned_cols=31 Identities=10% Similarity=0.048 Sum_probs=20.1
Q ss_pred CCCeeEEehhh------hhHHHHHhhccccCceEEEe
Q psy17637 34 VPPALMNLAMQ------LNAEELANSLTVKEYDVLLL 64 (150)
Q Consensus 34 ~~~~ivf~~~~------~~~~~l~~~L~~~~~~~~~~ 64 (150)
..+++||..+. -.|..+...|...++....+
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~i 50 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYV 50 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEE
Confidence 36899998652 25777777777666554433
No 491
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=21.93 E-value=2.5e+02 Score=18.61 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=30.2
Q ss_pred CeeEEehh---hhhHHHHHhhccccCce--EEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 36 PALMNLAM---QLNAEELANSLTVKEYD--VLLLHGDMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 36 ~~ivf~~~---~~~~~~l~~~L~~~~~~--~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
++.|.+.+ ...+++....|...++. +......-+++.-.+.++.+.....+++|+.
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~ 62 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAV 62 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEE
Confidence 34555544 34566777777665543 2333333456666777777766445566554
No 492
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=21.91 E-value=2.6e+02 Score=18.70 Aligned_cols=59 Identities=10% Similarity=0.037 Sum_probs=36.2
Q ss_pred eeEEeh--hhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCccc
Q psy17637 37 ALMNLA--MQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97 (150)
Q Consensus 37 ~ivf~~--~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 97 (150)
-+||+| +.+.-+.|.+...-.|--+..-+|+...-. ++...-+.|-+-+||-||....|
T Consensus 18 ~~VYvNyG~~eDf~~L~~~V~v~GkIvi~RyG~~~RG~--Kv~~A~~~GA~GviIYsDP~d~~ 78 (153)
T cd02131 18 EVVDVQYGSVEDLRRIRDNMNVTNQIALLKLGQAPLLY--KLSLLEEAGFGGVLLYVDPCDLP 78 (153)
T ss_pred EEEEecCCCHHHHHHHHhCCCccceEEEEeccCcchHH--HHHHHHHCCCeEEEEecChhhcc
Confidence 478998 777777776643323433455556655443 34444455778889988765443
No 493
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=21.82 E-value=3.2e+02 Score=20.79 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=33.3
Q ss_pred hhhHHHHHhhccccCce-EEEecCCCCHHHHHHHHHH-hhcCCceEEEEcCC
Q psy17637 44 QLNAEELANSLTVKEYD-VLLLHGDMDQSERNSVITK-FKRQECRILVATDV 93 (150)
Q Consensus 44 ~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~-f~~g~~~vlv~T~~ 93 (150)
.+.++.+.+.+...+-+ ...+.|.|.+..-..++.. .+.|-+.++|+|-.
T Consensus 32 ~~A~~i~~~Ml~d~~~~ifL~~tg~mvsaGlr~~i~~Li~~g~VD~iVTTga 83 (329)
T PRK00805 32 GESVRVWTEMLKDPDNTIFMGLSGAMVPAGMRKIIKWLIRNRYVDVLVSTGA 83 (329)
T ss_pred HHHHHHHHHHHhCCCCeEEEEeccchHHHHHHHHHHHHHHcCCeeEEEeCCC
Confidence 34566666666444433 6678888877666566544 56788899999953
No 494
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=21.62 E-value=1.7e+02 Score=18.13 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHhccCCCCCeeEEehh
Q psy17637 18 EFAGHLVRNLEGANQEVPPALMNLAM 43 (150)
Q Consensus 18 ~~~~~ll~~l~~~~~~~~~~ivf~~~ 43 (150)
..+..+.+.+......+++++|+|..
T Consensus 57 ~~~~~~~~~i~~~~~~~~~VlVHC~~ 82 (133)
T PF00782_consen 57 EHLDQAVEFIENAISEGGKVLVHCKA 82 (133)
T ss_dssp GGHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHhhhhhhcccceeEEEeCC
Confidence 45556666666654577899999965
No 495
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=21.54 E-value=1.8e+02 Score=23.16 Aligned_cols=33 Identities=9% Similarity=0.018 Sum_probs=24.8
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEe
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLL 64 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~ 64 (150)
....++++||.+-..+...+..|...|+.-..+
T Consensus 447 ~~~~~iivyC~~G~rS~~aa~~L~~~G~~nv~~ 479 (482)
T PRK01269 447 DQSKTYLLYCDRGVMSRLQALYLREQGFSNVKV 479 (482)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHHcCCccEEe
Confidence 455689999988878888888888777654443
No 496
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=21.52 E-value=5.4e+02 Score=22.70 Aligned_cols=55 Identities=13% Similarity=0.012 Sum_probs=37.3
Q ss_pred CCCCCeeEEehhhhhHHHHHh----hccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 32 QEVPPALMNLAMQLNAEELAN----SLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~----~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
..+..+.|.+.+..-+..-++ .+...|+++.++.+++++.++... -...|+++|.
T Consensus 121 l~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~------Y~~dI~YgT~ 179 (908)
T PRK13107 121 LTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAA------YNADITYGTN 179 (908)
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhc------CCCCeEEeCC
Confidence 356679999988765554444 344569999999999987554432 2346777774
No 497
>PF02713 DUF220: Domain of unknown function DUF220; InterPro: IPR003863 This entry consists of several Arabidopsis thaliana hypothetical proteins, none of which have any known function. They contain a conserved region with two cysteine residues.
Probab=21.49 E-value=73 Score=18.23 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=16.7
Q ss_pred cCCCChhHHHHhhccccCCCC
Q psy17637 110 DLARDIDTHTHRIGRTGRAGN 130 (150)
Q Consensus 110 ~~~~~~~~~~q~~GR~~R~g~ 130 (150)
--|++.++|....|--||.|.
T Consensus 53 ~~pks~eeY~~CsgG~Gri~S 73 (74)
T PF02713_consen 53 RKPKSREEYKKCSGGQGRIGS 73 (74)
T ss_pred CCCCCHHHHhhccCCCccccC
Confidence 368899999999877788763
No 498
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=21.47 E-value=84 Score=24.28 Aligned_cols=95 Identities=9% Similarity=0.109 Sum_probs=53.3
Q ss_pred CCeeEEeh---------hhhhHHHHHhhccccCceEE--EecCCCCHHH-HHHHHHHhhcCCceEEEEcCCCcccCCccC
Q psy17637 35 PPALMNLA---------MQLNAEELANSLTVKEYDVL--LLHGDMDQSE-RNSVITKFKRQECRILVATDVAARGLDIPH 102 (150)
Q Consensus 35 ~~~ivf~~---------~~~~~~~l~~~L~~~~~~~~--~~~~~~~~~~-r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~ 102 (150)
.+.+|.|| |+++..++.+...++++.+. -+|.++.-.. +.........+-....++....+.+.|+++
T Consensus 159 vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaG 238 (388)
T COG1168 159 VKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAG 238 (388)
T ss_pred ccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchh
Confidence 46788885 57788888888888887644 5666654332 222222222222233444455566778876
Q ss_pred CcEEE-EecCCCChhHHHHhhccccCCC
Q psy17637 103 IRTVV-NYDLARDIDTHTHRIGRTGRAG 129 (150)
Q Consensus 103 ~~~vi-~~~~~~~~~~~~q~~GR~~R~g 129 (150)
+.+-. ...-+.....|..++-+.++.|
T Consensus 239 L~~a~~Ii~n~~lr~~~~~~l~~~~~~~ 266 (388)
T COG1168 239 LKCAYIIISNRELRAKFLKRLKRNGLHG 266 (388)
T ss_pred hhheeEEecCHHHHHHHHHHHHHhcCCC
Confidence 65432 2222333466777766655544
No 499
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=21.29 E-value=2.4e+02 Score=18.25 Aligned_cols=11 Identities=18% Similarity=0.057 Sum_probs=4.9
Q ss_pred CcEEEEecCCC
Q psy17637 103 IRTVVNYDLAR 113 (150)
Q Consensus 103 ~~~vi~~~~~~ 113 (150)
.+.++..|...
T Consensus 114 ~~v~v~~Da~a 124 (157)
T cd01012 114 YEVFVVADACG 124 (157)
T ss_pred CEEEEEeeCCC
Confidence 34444444443
No 500
>KOG1255|consensus
Probab=21.12 E-value=3.4e+02 Score=19.86 Aligned_cols=72 Identities=8% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q psy17637 20 AGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV 93 (150)
Q Consensus 20 ~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 93 (150)
+..+.+...+. ...-.+||++-.-.+..+.+.+...-.-+++++.+.++.+-..+-..+...+..=||..++
T Consensus 84 F~sV~eA~~~t--~a~AsvIyVPpp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNC 155 (329)
T KOG1255|consen 84 FNSVAEAKKET--GADASVIYVPPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNC 155 (329)
T ss_pred hhhHHHHHHhh--CCCceEEEeCChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCCC
Done!