Query psy17637
Match_columns 150
No_of_seqs 124 out of 1208
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 19:08:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjv_A ATP-dependent RNA helic 100.0 6E-32 2.1E-36 180.0 15.8 138 4-143 7-144 (163)
2 1t5i_A C_terminal domain of A 100.0 2E-32 6.7E-37 183.9 12.9 136 5-142 4-139 (172)
3 2jgn_A DBX, DDX3, ATP-dependen 100.0 1.7E-31 5.7E-36 181.3 13.9 139 4-143 17-155 (185)
4 1fuk_A Eukaryotic initiation f 100.0 2.9E-31 1E-35 176.9 14.5 136 6-143 3-139 (165)
5 2rb4_A ATP-dependent RNA helic 100.0 5.5E-31 1.9E-35 177.2 15.1 137 5-143 6-149 (175)
6 2p6n_A ATP-dependent RNA helic 100.0 3.2E-31 1.1E-35 180.7 13.3 136 5-143 28-163 (191)
7 3eaq_A Heat resistant RNA depe 100.0 9E-31 3.1E-35 181.1 14.6 128 13-142 12-139 (212)
8 3i32_A Heat resistant RNA depe 100.0 8.1E-30 2.8E-34 184.3 14.7 133 9-143 5-137 (300)
9 2yjt_D ATP-dependent RNA helic 99.9 1.1E-31 3.9E-36 179.8 0.0 137 6-144 3-140 (170)
10 2db3_A ATP-dependent RNA helic 100.0 3.8E-28 1.3E-32 183.6 17.1 137 6-145 275-411 (434)
11 1oyw_A RECQ helicase, ATP-depe 100.0 1.9E-27 6.6E-32 183.5 15.1 134 5-142 211-344 (523)
12 2v1x_A ATP-dependent DNA helic 100.0 1.8E-27 6.1E-32 185.8 14.4 137 5-142 237-375 (591)
13 2i4i_A ATP-dependent RNA helic 100.0 1.6E-27 5.5E-32 178.4 13.6 138 6-144 249-386 (417)
14 1xti_A Probable ATP-dependent 99.9 4E-27 1.4E-31 174.8 14.2 135 7-143 225-359 (391)
15 1s2m_A Putative ATP-dependent 99.9 1.4E-26 4.7E-31 172.6 15.3 135 7-143 233-367 (400)
16 2j0s_A ATP-dependent RNA helic 99.9 6.4E-27 2.2E-31 175.0 13.0 123 19-143 263-385 (410)
17 3pey_A ATP-dependent RNA helic 99.9 6.5E-27 2.2E-31 173.6 12.8 136 7-143 217-358 (395)
18 3fht_A ATP-dependent RNA helic 99.9 7.9E-27 2.7E-31 174.2 12.1 126 15-142 249-380 (412)
19 1hv8_A Putative ATP-dependent 99.9 4.6E-26 1.6E-30 167.5 15.3 134 7-143 214-347 (367)
20 3eiq_A Eukaryotic initiation f 99.9 9.2E-27 3.2E-31 174.0 10.8 123 19-143 267-389 (414)
21 3i5x_A ATP-dependent RNA helic 99.9 2.6E-26 8.9E-31 178.2 13.4 112 32-143 337-451 (563)
22 3sqw_A ATP-dependent RNA helic 99.9 4.3E-26 1.5E-30 177.7 13.5 120 22-142 277-399 (579)
23 1wp9_A ATP-dependent RNA helic 99.9 2.1E-25 7.2E-30 168.6 9.4 126 20-146 345-480 (494)
24 2z0m_A 337AA long hypothetical 99.9 1.5E-24 5.2E-29 157.9 12.8 110 24-139 212-321 (337)
25 3fmp_B ATP-dependent RNA helic 99.9 9.9E-27 3.4E-31 177.5 0.0 113 33-145 332-450 (479)
26 3fho_A ATP-dependent RNA helic 99.9 1.7E-25 5.9E-30 172.1 5.9 124 20-145 345-474 (508)
27 1fuu_A Yeast initiation factor 99.9 1.8E-26 6E-31 171.4 0.0 112 33-144 258-369 (394)
28 4a2p_A RIG-I, retinoic acid in 99.9 4.2E-25 1.4E-29 170.5 7.1 123 19-143 373-510 (556)
29 1z5z_A Helicase of the SNF2/RA 99.9 2.3E-24 8E-29 153.9 10.0 128 19-146 97-229 (271)
30 1tf5_A Preprotein translocase 99.9 8.3E-24 2.8E-28 168.1 11.9 126 16-143 414-547 (844)
31 4gl2_A Interferon-induced heli 99.9 5.9E-24 2E-28 168.5 10.5 104 34-140 400-517 (699)
32 2d7d_A Uvrabc system protein B 99.9 1.8E-23 6.3E-28 165.0 12.9 123 20-143 431-558 (661)
33 1c4o_A DNA nucleotide excision 99.9 1.8E-23 6.3E-28 165.1 12.3 123 20-143 425-552 (664)
34 3tbk_A RIG-I helicase domain; 99.9 1.6E-24 5.5E-29 167.0 5.6 110 32-143 387-509 (555)
35 3jux_A Protein translocase sub 99.9 1.3E-22 4.5E-27 159.0 13.3 127 15-143 455-589 (822)
36 4a2q_A RIG-I, retinoic acid in 99.9 1.2E-23 4.1E-28 169.1 7.1 123 19-143 614-751 (797)
37 2ykg_A Probable ATP-dependent 99.9 7.3E-24 2.5E-28 167.9 5.7 122 20-143 382-518 (696)
38 3dmq_A RNA polymerase-associat 99.9 1.3E-22 4.5E-27 165.8 12.1 124 19-144 490-618 (968)
39 3oiy_A Reverse gyrase helicase 99.9 2.4E-22 8.4E-27 150.7 12.6 121 6-138 230-362 (414)
40 2fsf_A Preprotein translocase 99.9 2.2E-22 7.7E-27 159.7 12.9 127 16-144 423-586 (853)
41 2xgj_A ATP-dependent RNA helic 99.9 2.8E-22 9.6E-27 164.1 13.0 120 20-141 331-499 (1010)
42 4a2w_A RIG-I, retinoic acid in 99.9 7.3E-23 2.5E-27 166.8 9.0 123 19-143 614-751 (936)
43 1yks_A Genome polyprotein [con 99.9 4.9E-23 1.7E-27 156.0 7.4 101 34-139 177-297 (440)
44 2va8_A SSO2462, SKI2-type heli 99.9 3.4E-22 1.2E-26 159.1 11.4 111 32-142 250-409 (715)
45 3l9o_A ATP-dependent RNA helic 99.9 3.5E-22 1.2E-26 164.8 11.8 123 19-143 428-599 (1108)
46 2jlq_A Serine protease subunit 99.9 3E-22 1E-26 152.1 9.7 103 34-141 188-311 (451)
47 2fwr_A DNA repair protein RAD2 99.9 2.6E-22 8.9E-27 152.8 9.1 120 20-146 337-459 (472)
48 2zj8_A DNA helicase, putative 99.9 3.4E-22 1.2E-26 159.2 9.4 110 33-142 236-388 (720)
49 2eyq_A TRCF, transcription-rep 99.9 1.7E-21 5.7E-26 161.4 13.6 110 32-141 810-922 (1151)
50 1nkt_A Preprotein translocase 99.9 1.2E-21 4.3E-26 156.0 12.3 126 16-143 442-619 (922)
51 4a4z_A Antiviral helicase SKI2 99.9 1.6E-21 5.6E-26 159.5 13.0 122 15-139 319-490 (997)
52 2xau_A PRE-mRNA-splicing facto 99.9 5.8E-23 2E-27 164.4 4.2 110 33-143 302-445 (773)
53 2z83_A Helicase/nucleoside tri 99.9 1.7E-22 5.7E-27 153.8 6.0 103 34-141 190-313 (459)
54 2p6r_A Afuhel308 helicase; pro 99.9 5.6E-22 1.9E-26 157.6 9.0 110 33-142 241-389 (702)
55 1z63_A Helicase of the SNF2/RA 99.9 1.5E-21 5E-26 149.6 10.3 127 19-145 326-457 (500)
56 2wv9_A Flavivirin protease NS2 99.9 1.2E-21 4E-26 154.8 9.4 102 33-139 409-531 (673)
57 2whx_A Serine protease/ntpase/ 99.9 1.7E-21 5.7E-26 152.8 9.4 101 34-139 355-476 (618)
58 1gm5_A RECG; helicase, replica 99.9 1.5E-22 5.1E-27 161.8 3.5 119 22-140 566-696 (780)
59 2oca_A DAR protein, ATP-depend 99.8 1.5E-21 5E-26 150.0 8.2 105 33-138 347-452 (510)
60 1z3i_X Similar to RAD54-like; 99.8 1.2E-20 4.1E-25 148.7 13.0 123 21-145 405-532 (644)
61 3rc3_A ATP-dependent RNA helic 99.8 5.6E-21 1.9E-25 150.8 10.4 104 35-139 321-443 (677)
62 2v6i_A RNA helicase; membrane, 99.8 4.5E-21 1.5E-25 144.9 8.7 101 34-139 171-288 (431)
63 3mwy_W Chromo domain-containin 99.8 2E-20 6.8E-25 150.6 11.0 127 20-146 558-689 (800)
64 3h1t_A Type I site-specific re 99.8 2E-20 6.8E-25 146.1 10.6 98 32-130 437-545 (590)
65 3o8b_A HCV NS3 protease/helica 99.8 5.7E-21 1.9E-25 149.9 7.2 103 33-145 395-518 (666)
66 1gku_B Reverse gyrase, TOP-RG; 99.8 5.5E-20 1.9E-24 151.4 10.8 103 34-142 275-455 (1054)
67 4ddu_A Reverse gyrase; topoiso 99.8 4.9E-19 1.7E-23 146.1 10.4 96 6-113 287-388 (1104)
68 4f92_B U5 small nuclear ribonu 99.8 5.2E-19 1.8E-23 150.6 9.0 115 32-146 315-478 (1724)
69 4f92_B U5 small nuclear ribonu 99.8 1.2E-18 4.1E-23 148.5 9.4 112 32-143 1153-1310(1724)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.5 4.9E-14 1.7E-18 115.7 11.4 105 34-139 537-707 (1038)
71 2ipc_A Preprotein translocase 99.1 7.9E-10 2.7E-14 89.0 10.1 125 16-143 425-700 (997)
72 2vl7_A XPD; helicase, unknown 98.9 3.7E-09 1.3E-13 81.9 9.1 102 33-140 383-520 (540)
73 3hgt_A HDA1 complex subunit 3; 98.6 4.7E-07 1.6E-11 65.7 10.3 119 19-145 113-241 (328)
74 4a15_A XPD helicase, ATP-depen 98.6 5.8E-07 2E-11 70.8 11.0 104 33-140 447-583 (620)
75 3crv_A XPD/RAD3 related DNA he 98.1 7.6E-05 2.6E-09 57.9 12.3 102 33-140 392-530 (551)
76 1gm5_A RECG; helicase, replica 97.1 0.0034 1.1E-07 50.8 9.2 76 33-108 416-496 (780)
77 3oiy_A Reverse gyrase helicase 96.4 0.016 5.5E-07 42.9 8.1 77 32-108 62-145 (414)
78 2eyq_A TRCF, transcription-rep 95.8 0.062 2.1E-06 45.4 9.4 76 32-107 650-730 (1151)
79 4ddu_A Reverse gyrase; topoiso 95.6 0.05 1.7E-06 45.7 8.3 77 32-108 119-202 (1104)
80 1t6n_A Probable ATP-dependent 94.2 0.22 7.6E-06 33.3 7.2 72 34-108 82-164 (220)
81 1oyw_A RECQ helicase, ATP-depe 94.2 0.1 3.5E-06 40.2 6.0 59 34-92 65-123 (523)
82 2v1x_A ATP-dependent DNA helic 93.9 0.12 4.1E-06 40.5 5.9 59 34-92 84-144 (591)
83 3ber_A Probable ATP-dependent 93.6 0.47 1.6E-05 32.6 8.1 82 22-108 100-192 (249)
84 2l82_A Designed protein OR32; 93.5 0.32 1.1E-05 29.4 6.0 48 37-84 5-52 (162)
85 3gk5_A Uncharacterized rhodane 93.0 0.12 4.2E-06 30.9 3.8 47 22-69 44-90 (108)
86 2oxc_A Probable ATP-dependent 92.8 0.36 1.2E-05 32.6 6.5 72 32-108 90-172 (230)
87 3fe2_A Probable ATP-dependent 92.7 0.88 3E-05 30.9 8.3 72 33-108 101-182 (242)
88 1xti_A Probable ATP-dependent 92.3 0.56 1.9E-05 34.0 7.2 73 33-108 75-158 (391)
89 3bor_A Human initiation factor 91.9 0.38 1.3E-05 32.7 5.7 73 33-108 97-179 (237)
90 1vec_A ATP-dependent RNA helic 91.6 0.79 2.7E-05 30.1 6.9 72 33-108 70-152 (206)
91 3dmn_A Putative DNA helicase; 91.4 1.9 6.6E-05 27.9 9.5 78 20-112 47-124 (174)
92 3iuy_A Probable ATP-dependent 91.2 0.42 1.4E-05 32.2 5.2 72 33-108 93-173 (228)
93 2pl3_A Probable ATP-dependent 90.7 0.97 3.3E-05 30.5 6.8 71 33-108 96-177 (236)
94 3flh_A Uncharacterized protein 90.1 0.2 6.8E-06 30.7 2.6 46 22-68 60-107 (124)
95 3ly5_A ATP-dependent RNA helic 89.9 2.5 8.5E-05 29.1 8.4 72 33-108 125-207 (262)
96 3g5j_A Putative ATP/GTP bindin 89.9 0.18 6.2E-06 30.9 2.3 47 22-69 77-125 (134)
97 3foj_A Uncharacterized protein 89.7 0.18 6.3E-06 29.5 2.1 37 32-68 54-90 (100)
98 3eme_A Rhodanese-like domain p 89.4 0.17 5.7E-06 29.9 1.8 37 32-68 54-90 (103)
99 1wp9_A ATP-dependent RNA helic 89.2 1.2 4.1E-05 32.9 6.7 71 33-108 51-131 (494)
100 3hix_A ALR3790 protein; rhodan 89.2 0.34 1.2E-05 28.7 3.0 37 32-68 50-87 (106)
101 3iwh_A Rhodanese-like domain p 89.2 0.18 6.2E-06 30.0 1.8 37 32-68 54-90 (103)
102 1wv9_A Rhodanese homolog TT165 89.1 0.24 8.1E-06 28.7 2.2 35 35-69 54-88 (94)
103 1qde_A EIF4A, translation init 88.5 0.51 1.8E-05 31.5 3.9 72 32-108 80-161 (224)
104 1gku_B Reverse gyrase, TOP-RG; 88.2 0.9 3.1E-05 38.1 5.8 73 33-107 98-180 (1054)
105 2gxq_A Heat resistant RNA depe 88.1 1.3 4.5E-05 29.0 5.7 72 33-108 71-150 (207)
106 1gmx_A GLPE protein; transfera 88.1 0.43 1.5E-05 28.3 3.0 38 32-69 56-94 (108)
107 1fuu_A Yeast initiation factor 88.0 1.8 6.2E-05 31.2 6.8 70 33-107 88-167 (394)
108 2db3_A ATP-dependent RNA helic 87.9 1.9 6.4E-05 32.1 7.0 83 22-108 113-209 (434)
109 3dkp_A Probable ATP-dependent 87.9 1.1 3.8E-05 30.4 5.4 83 23-108 87-181 (245)
110 1tq1_A AT5G66040, senescence-a 87.4 0.37 1.3E-05 29.7 2.4 38 32-69 80-118 (129)
111 1wrb_A DJVLGB; RNA helicase, D 87.4 3.1 0.00011 28.2 7.4 71 34-108 100-180 (253)
112 3tbk_A RIG-I helicase domain; 86.9 0.88 3E-05 34.5 4.8 71 34-108 52-133 (555)
113 4a2q_A RIG-I, retinoic acid in 86.3 1.9 6.4E-05 34.9 6.5 71 34-108 296-377 (797)
114 4a2p_A RIG-I, retinoic acid in 86.2 1.4 4.8E-05 33.5 5.6 71 34-108 55-136 (556)
115 1q0u_A Bstdead; DEAD protein, 86.2 0.56 1.9E-05 31.3 3.0 72 33-108 71-156 (219)
116 1s2m_A Putative ATP-dependent 86.1 3.2 0.00011 30.1 7.3 72 33-108 88-169 (400)
117 3fmo_B ATP-dependent RNA helic 85.0 0.88 3E-05 32.3 3.7 69 33-108 161-241 (300)
118 2i4i_A ATP-dependent RNA helic 84.5 6.4 0.00022 28.6 8.3 70 35-108 102-181 (417)
119 2k0z_A Uncharacterized protein 84.4 0.77 2.6E-05 27.3 2.7 38 32-69 54-91 (110)
120 3nhv_A BH2092 protein; alpha-b 84.1 0.45 1.6E-05 30.0 1.7 38 32-69 70-109 (144)
121 2fsx_A RV0390, COG0607: rhodan 83.9 0.77 2.6E-05 28.9 2.7 38 32-69 78-116 (148)
122 3ilm_A ALR3790 protein; rhodan 83.7 0.9 3.1E-05 28.5 2.9 37 32-68 54-91 (141)
123 1vee_A Proline-rich protein fa 83.2 1.2 4E-05 27.5 3.3 37 33-69 73-110 (134)
124 1hv8_A Putative ATP-dependent 83.1 5.5 0.00019 28.2 7.3 70 33-107 73-152 (367)
125 1qxn_A SUD, sulfide dehydrogen 83.1 0.58 2E-05 29.2 1.9 37 32-68 80-117 (137)
126 2jtq_A Phage shock protein E; 82.3 0.73 2.5E-05 25.9 1.9 37 32-69 39-76 (85)
127 2fsf_A Preprotein translocase 82.2 5.3 0.00018 32.8 7.4 54 33-92 114-171 (853)
128 3eiq_A Eukaryotic initiation f 82.0 5.6 0.00019 28.8 7.1 72 33-107 107-188 (414)
129 2hhg_A Hypothetical protein RP 81.7 0.52 1.8E-05 29.2 1.2 37 32-68 84-121 (139)
130 3d1p_A Putative thiosulfate su 80.8 0.71 2.4E-05 28.6 1.7 37 32-68 89-126 (139)
131 2lci_A Protein OR36; structura 79.4 7.2 0.00025 22.7 9.1 61 32-92 49-109 (134)
132 4gl2_A Interferon-induced heli 79.3 0.36 1.2E-05 38.1 -0.1 71 34-108 56-142 (699)
133 2j0s_A ATP-dependent RNA helic 78.9 7 0.00024 28.4 6.7 71 33-107 104-184 (410)
134 1tf5_A Preprotein translocase 78.8 8.3 0.00028 31.7 7.5 54 33-92 123-180 (844)
135 2z0m_A 337AA long hypothetical 78.0 5.3 0.00018 28.0 5.7 69 34-107 56-134 (337)
136 3sqw_A ATP-dependent RNA helic 77.1 11 0.00036 29.2 7.5 71 34-107 95-180 (579)
137 4a2w_A RIG-I, retinoic acid in 75.4 6.4 0.00022 32.6 6.1 55 34-92 296-354 (936)
138 2ipc_A Preprotein translocase 74.6 15 0.00053 30.6 7.9 54 33-92 119-176 (997)
139 3i5x_A ATP-dependent RNA helic 74.5 14 0.00047 28.3 7.5 68 22-92 131-209 (563)
140 1nkt_A Preprotein translocase 73.3 11 0.00037 31.3 6.7 54 33-92 151-208 (922)
141 2ykg_A Probable ATP-dependent 73.0 5.9 0.0002 31.2 5.2 70 35-108 62-142 (696)
142 3tg1_B Dual specificity protei 72.4 1.8 6.1E-05 27.5 1.8 35 34-68 93-136 (158)
143 1uar_A Rhodanese; sulfurtransf 70.4 5 0.00017 27.9 3.9 37 32-68 231-269 (285)
144 1u6t_A SH3 domain-binding glut 70.2 12 0.00042 22.8 5.1 41 40-80 12-52 (121)
145 3sxu_A DNA polymerase III subu 70.0 6.8 0.00023 24.9 4.1 92 6-112 6-105 (150)
146 1urh_A 3-mercaptopyruvate sulf 69.8 3.3 0.00011 28.8 2.8 38 32-69 228-266 (280)
147 4f67_A UPF0176 protein LPG2838 68.7 4.2 0.00014 28.5 3.2 38 32-69 179-217 (265)
148 1t57_A Conserved protein MTH16 67.7 19 0.00065 24.1 5.9 58 33-95 51-116 (206)
149 2fz4_A DNA repair protein RAD2 67.2 8.5 0.00029 26.1 4.4 45 34-91 133-178 (237)
150 2oca_A DAR protein, ATP-depend 66.9 6.3 0.00021 29.8 4.1 67 34-107 157-230 (510)
151 2fwr_A DNA repair protein RAD2 66.8 7.6 0.00026 29.0 4.5 46 34-92 133-179 (472)
152 2eg4_A Probable thiosulfate su 64.3 3 0.0001 28.1 1.7 37 32-68 182-218 (230)
153 1urh_A 3-mercaptopyruvate sulf 63.9 5.4 0.00019 27.7 3.0 37 32-68 84-122 (280)
154 3aay_A Putative thiosulfate su 63.6 9.4 0.00032 26.4 4.2 37 32-68 224-262 (277)
155 4fn4_A Short chain dehydrogena 63.2 34 0.0012 23.6 7.8 68 22-92 22-92 (254)
156 1uar_A Rhodanese; sulfurtransf 62.6 8.8 0.0003 26.6 3.9 37 32-68 77-115 (285)
157 3b6e_A Interferon-induced heli 62.0 3.8 0.00013 26.8 1.8 56 33-92 81-140 (216)
158 3mwd_B ATP-citrate synthase; A 61.5 18 0.0006 26.3 5.3 51 35-85 81-132 (334)
159 3i2v_A Adenylyltransferase and 61.2 2.3 7.9E-05 25.5 0.6 35 35-69 73-114 (127)
160 3hzu_A Thiosulfate sulfurtrans 61.1 9.6 0.00033 27.2 3.9 37 32-68 109-147 (318)
161 3pey_A ATP-dependent RNA helic 60.9 19 0.00066 25.6 5.6 68 33-108 74-151 (395)
162 1t3k_A Arath CDC25, dual-speci 60.2 12 0.0004 23.5 3.8 38 32-69 83-130 (152)
163 1vp8_A Hypothetical protein AF 58.2 39 0.0013 22.6 8.0 59 33-95 43-109 (201)
164 3l9o_A ATP-dependent RNA helic 57.9 25 0.00085 29.8 6.3 49 32-91 225-273 (1108)
165 1b93_A Protein (methylglyoxal 57.6 34 0.0012 21.8 7.4 78 6-92 12-90 (152)
166 2eg4_A Probable thiosulfate su 57.6 16 0.00053 24.5 4.4 33 34-67 61-95 (230)
167 3fht_A ATP-dependent RNA helic 57.5 11 0.00036 27.3 3.7 68 33-107 94-173 (412)
168 1rhs_A Sulfur-substituted rhod 56.6 9.2 0.00032 26.8 3.2 38 32-69 238-276 (296)
169 1e0c_A Rhodanese, sulfurtransf 56.5 3.8 0.00013 28.3 1.1 37 32-68 221-258 (271)
170 1e0c_A Rhodanese, sulfurtransf 56.2 8.7 0.0003 26.4 2.9 37 32-68 79-117 (271)
171 3hzu_A Thiosulfate sulfurtrans 56.0 6.4 0.00022 28.1 2.3 37 32-68 257-295 (318)
172 3olh_A MST, 3-mercaptopyruvate 55.7 4.6 0.00016 28.6 1.4 38 32-69 252-290 (302)
173 3ics_A Coenzyme A-disulfide re 54.9 5.3 0.00018 30.9 1.8 38 32-69 539-576 (588)
174 3hjh_A Transcription-repair-co 54.7 9.3 0.00032 29.2 3.1 65 34-110 382-446 (483)
175 1vmd_A MGS, methylglyoxal synt 53.3 45 0.0015 21.9 7.0 80 5-93 27-107 (178)
176 2l69_A Rossmann 2X3 fold prote 52.8 32 0.0011 20.0 8.5 67 9-79 53-119 (134)
177 2wlr_A Putative thiosulfate su 52.6 11 0.00037 28.0 3.1 37 32-68 201-238 (423)
178 3ijp_A DHPR, dihydrodipicolina 52.1 50 0.0017 23.3 6.3 63 35-100 89-151 (288)
179 3zyw_A Glutaredoxin-3; metal b 51.3 35 0.0012 20.0 5.4 46 33-78 14-65 (111)
180 3ipz_A Monothiol glutaredoxin- 51.2 34 0.0012 19.9 6.3 46 34-79 17-68 (109)
181 2ouc_A Dual specificity protei 51.1 4.9 0.00017 24.4 0.9 35 34-68 83-126 (142)
182 3aay_A Putative thiosulfate su 50.9 17 0.00057 25.1 3.7 37 32-68 75-113 (277)
183 2p6r_A Afuhel308 helicase; pro 50.1 33 0.0011 27.2 5.7 69 33-108 67-144 (702)
184 1j5p_A Aspartate dehydrogenase 49.8 57 0.002 22.6 6.2 61 34-94 60-122 (253)
185 3fmp_B ATP-dependent RNA helic 49.7 16 0.00055 27.3 3.7 68 34-108 162-241 (479)
186 3ntd_A FAD-dependent pyridine 48.7 7.4 0.00025 29.8 1.7 38 32-69 522-559 (565)
187 4f3y_A DHPR, dihydrodipicolina 48.4 50 0.0017 23.0 5.8 61 36-99 75-135 (272)
188 3h11_B Caspase-8; cell death, 48.3 41 0.0014 23.5 5.3 39 43-82 47-85 (271)
189 1t1v_A SH3BGRL3, SH3 domain-bi 48.2 34 0.0012 19.0 5.0 38 43-80 17-54 (93)
190 2z06_A Putative uncharacterize 46.1 53 0.0018 22.7 5.5 46 44-92 125-170 (252)
191 3hjh_A Transcription-repair-co 45.7 79 0.0027 24.1 6.9 97 23-121 30-144 (483)
192 2j48_A Two-component sensor ki 45.5 35 0.0012 19.0 4.1 69 57-126 44-116 (119)
193 3flu_A DHDPS, dihydrodipicolin 45.4 66 0.0023 22.6 6.1 33 60-92 78-111 (297)
194 3tp9_A Beta-lactamase and rhod 45.3 8.8 0.0003 28.9 1.6 38 32-69 425-463 (474)
195 1p9l_A Dihydrodipicolinate red 45.1 72 0.0025 21.8 6.2 58 35-92 46-104 (245)
196 2kpo_A Rossmann 2X2 fold prote 44.7 41 0.0014 18.9 7.0 64 17-82 35-98 (110)
197 1t70_A Phosphatase; crystal, X 44.7 39 0.0013 23.4 4.7 45 45-92 129-173 (255)
198 2ct6_A SH3 domain-binding glut 44.6 46 0.0016 19.4 4.6 46 35-80 8-60 (111)
199 1qys_A TOP7; alpha-beta, novel 44.5 25 0.00085 19.6 3.0 39 17-55 30-68 (106)
200 3l21_A DHDPS, dihydrodipicolin 43.8 77 0.0026 22.4 6.3 12 68-79 65-76 (304)
201 1yt8_A Thiosulfate sulfurtrans 43.8 13 0.00045 28.6 2.5 36 33-68 321-357 (539)
202 2lnd_A De novo designed protei 43.7 43 0.0015 18.9 6.3 58 20-81 40-99 (112)
203 2wkj_A N-acetylneuraminate lya 43.6 78 0.0027 22.3 6.3 10 83-92 106-115 (303)
204 2j6p_A SB(V)-AS(V) reductase; 43.0 20 0.00068 22.3 2.9 21 49-69 88-111 (152)
205 1c4o_A DNA nucleotide excision 43.0 89 0.003 24.8 7.1 65 34-99 53-145 (664)
206 3s5o_A 4-hydroxy-2-oxoglutarat 43.0 86 0.0029 22.2 6.6 10 83-92 109-118 (307)
207 2wlr_A Putative thiosulfate su 42.8 21 0.00073 26.4 3.4 37 32-68 356-393 (423)
208 3cpr_A Dihydrodipicolinate syn 42.8 86 0.003 22.1 6.6 12 68-79 66-77 (304)
209 3brc_A Conserved protein of un 42.3 21 0.00073 22.5 2.7 28 97-138 88-115 (156)
210 1xky_A Dihydrodipicolinate syn 42.3 87 0.003 22.1 6.4 35 59-93 82-117 (301)
211 3fho_A ATP-dependent RNA helic 42.0 22 0.00076 26.9 3.4 68 33-108 188-265 (508)
212 2ehh_A DHDPS, dihydrodipicolin 41.3 90 0.0031 21.9 6.7 35 59-93 70-105 (294)
213 2yxg_A DHDPS, dihydrodipicolin 40.9 90 0.0031 21.8 6.5 35 59-93 70-105 (289)
214 3a5f_A Dihydrodipicolinate syn 40.8 80 0.0027 22.1 5.9 35 59-93 71-106 (291)
215 4a4z_A Antiviral helicase SKI2 40.7 61 0.0021 27.2 6.0 37 33-69 81-119 (997)
216 1o5k_A DHDPS, dihydrodipicolin 40.4 90 0.0031 22.0 6.2 34 59-92 82-116 (306)
217 3h11_A CAsp8 and FADD-like apo 40.4 13 0.00044 26.1 1.7 49 33-82 42-90 (272)
218 1okg_A Possible 3-mercaptopyru 40.3 18 0.00062 26.5 2.6 38 32-69 93-132 (373)
219 2yan_A Glutaredoxin-3; oxidore 40.0 52 0.0018 18.7 5.9 47 35-81 17-69 (105)
220 2hmc_A AGR_L_411P, dihydrodipi 39.8 70 0.0024 23.1 5.6 46 47-92 49-100 (344)
221 3fkr_A L-2-keto-3-deoxyarabona 39.8 70 0.0024 22.7 5.5 34 59-92 78-112 (309)
222 1f6k_A N-acetylneuraminate lya 39.8 95 0.0032 21.7 6.3 36 59-94 74-110 (293)
223 3cg4_A Response regulator rece 39.7 56 0.0019 19.1 5.5 86 38-126 34-125 (142)
224 3ilh_A Two component response 39.3 57 0.002 19.1 5.8 71 57-129 59-140 (146)
225 2ojp_A DHDPS, dihydrodipicolin 39.2 80 0.0027 22.1 5.8 34 59-92 71-105 (292)
226 2dko_A Caspase-3; low barrier 39.2 67 0.0023 20.1 4.8 40 43-83 39-78 (146)
227 4e7p_A Response regulator; DNA 39.0 61 0.0021 19.3 6.6 85 38-128 49-140 (150)
228 3gt7_A Sensor protein; structu 38.9 63 0.0022 19.4 5.3 72 51-125 44-124 (154)
229 3daq_A DHDPS, dihydrodipicolin 38.8 89 0.003 21.9 5.9 35 59-93 72-107 (292)
230 3b4u_A Dihydrodipicolinate syn 38.7 86 0.0029 22.0 5.8 35 59-93 73-108 (294)
231 3qfe_A Putative dihydrodipicol 38.5 96 0.0033 22.1 6.1 34 59-92 81-115 (318)
232 3tak_A DHDPS, dihydrodipicolin 38.4 84 0.0029 22.0 5.8 35 59-93 71-106 (291)
233 3grc_A Sensor protein, kinase; 38.4 59 0.002 19.0 4.9 75 53-127 45-126 (140)
234 2zj8_A DNA helicase, putative 38.3 43 0.0015 26.6 4.7 52 34-92 68-122 (720)
235 3s5u_A Putative uncharacterize 38.2 76 0.0026 21.4 5.3 50 16-67 145-199 (220)
236 3eod_A Protein HNR; response r 38.2 57 0.002 18.7 5.2 42 51-92 44-87 (130)
237 3qze_A DHDPS, dihydrodipicolin 38.1 79 0.0027 22.5 5.6 24 68-91 73-99 (314)
238 4dpp_A DHDPS 2, dihydrodipicol 38.1 1.1E+02 0.0036 22.5 6.3 47 46-92 81-136 (360)
239 2yv1_A Succinyl-COA ligase [AD 38.1 68 0.0023 22.5 5.3 56 35-92 72-128 (294)
240 2r8w_A AGR_C_1641P; APC7498, d 37.9 88 0.003 22.4 5.9 46 47-92 57-111 (332)
241 2d7d_A Uvrabc system protein B 37.9 53 0.0018 26.0 5.1 87 34-121 57-175 (661)
242 3lte_A Response regulator; str 37.8 58 0.002 18.7 4.7 75 54-128 46-125 (132)
243 3h1t_A Type I site-specific re 37.0 1.2E+02 0.0041 23.3 6.9 48 33-92 234-282 (590)
244 3gr1_A Protein PRGH; type III 36.9 99 0.0034 21.1 5.6 48 34-84 26-75 (227)
245 1qtn_A Caspase-8; apoptosis, d 36.9 82 0.0028 20.1 5.4 39 44-83 54-92 (164)
246 2yv2_A Succinyl-COA synthetase 36.8 73 0.0025 22.4 5.2 56 35-92 73-129 (297)
247 3dz1_A Dihydrodipicolinate syn 36.8 1E+02 0.0036 21.8 6.1 34 59-92 77-111 (313)
248 2qxy_A Response regulator; reg 36.7 64 0.0022 18.9 5.6 73 52-128 42-121 (142)
249 3r2u_A Metallo-beta-lactamase 36.7 7.3 0.00025 29.4 0.0 38 32-69 423-461 (466)
250 2v9d_A YAGE; dihydrodipicolini 36.4 90 0.0031 22.5 5.7 46 47-92 54-108 (343)
251 3m5v_A DHDPS, dihydrodipicolin 36.2 1.1E+02 0.0037 21.6 6.1 10 20-29 30-39 (301)
252 3e4c_A Caspase-1; zymogen, inf 36.2 64 0.0022 22.9 4.8 47 35-82 61-118 (302)
253 2l82_A Designed protein OR32; 36.1 70 0.0024 19.1 8.2 53 33-85 76-130 (162)
254 3i42_A Response regulator rece 35.9 62 0.0021 18.5 4.5 75 53-129 42-123 (127)
255 3h5d_A DHDPS, dihydrodipicolin 35.6 86 0.0029 22.2 5.5 34 59-92 77-112 (311)
256 3si9_A DHDPS, dihydrodipicolin 35.4 82 0.0028 22.4 5.3 12 68-79 72-83 (315)
257 2rjn_A Response regulator rece 35.3 72 0.0025 19.0 5.5 83 38-125 34-123 (154)
258 2yvq_A Carbamoyl-phosphate syn 35.0 80 0.0027 19.5 5.9 18 75-92 87-104 (143)
259 1yt8_A Thiosulfate sulfurtrans 34.8 17 0.00057 28.0 1.7 36 33-68 62-98 (539)
260 2rfg_A Dihydrodipicolinate syn 34.3 81 0.0028 22.2 5.2 36 59-94 70-106 (297)
261 2vc6_A MOSA, dihydrodipicolina 34.1 75 0.0026 22.2 4.9 35 59-93 70-105 (292)
262 2xw6_A MGS, methylglyoxal synt 34.0 84 0.0029 19.4 6.0 36 57-93 48-83 (134)
263 3na8_A Putative dihydrodipicol 33.9 83 0.0028 22.4 5.2 24 68-91 74-100 (315)
264 2pln_A HP1043, response regula 33.9 71 0.0024 18.5 4.8 17 111-127 115-132 (137)
265 3hv2_A Response regulator/HD d 33.7 77 0.0026 18.9 5.6 69 55-125 55-130 (153)
266 4g81_D Putative hexonate dehyd 33.7 1.1E+02 0.0039 20.9 8.2 68 22-92 24-94 (255)
267 1v5x_A PRA isomerase, phosphor 33.6 1E+02 0.0036 20.4 5.5 41 33-75 52-92 (203)
268 1rif_A DAR protein, DNA helica 33.5 47 0.0016 22.7 3.8 52 34-92 157-212 (282)
269 1qkk_A DCTD, C4-dicarboxylate 32.8 68 0.0023 19.2 4.2 76 48-126 37-119 (155)
270 2nu8_A Succinyl-COA ligase [AD 32.8 93 0.0032 21.7 5.2 58 34-93 65-123 (288)
271 3jx9_A Putative phosphoheptose 32.6 31 0.0011 22.3 2.5 35 32-66 76-112 (170)
272 3utn_X Thiosulfate sulfurtrans 32.4 71 0.0024 22.9 4.6 37 32-68 273-310 (327)
273 3r1i_A Short-chain type dehydr 32.1 1.2E+02 0.0041 20.7 7.0 68 21-91 46-116 (276)
274 2qr3_A Two-component system re 32.0 77 0.0026 18.3 5.5 73 53-128 42-126 (140)
275 1okg_A Possible 3-mercaptopyru 32.0 15 0.0005 26.9 1.0 37 34-70 246-283 (373)
276 1vm6_A DHPR, dihydrodipicolina 31.7 1.2E+02 0.0042 20.6 5.9 62 34-98 53-114 (228)
277 3gr0_A Protein PRGH; type III 31.7 1.1E+02 0.0038 20.3 5.1 49 33-84 25-75 (197)
278 3d0c_A Dihydrodipicolinate syn 31.5 94 0.0032 22.1 5.1 46 47-92 35-89 (314)
279 1vlj_A NADH-dependent butanol 30.9 1.6E+02 0.0054 21.6 7.0 57 35-91 44-108 (407)
280 2lpm_A Two-component response 30.9 24 0.00082 21.3 1.7 71 54-127 49-121 (123)
281 3e96_A Dihydrodipicolinate syn 30.8 79 0.0027 22.4 4.6 10 83-92 106-115 (316)
282 3gx8_A Monothiol glutaredoxin- 30.7 87 0.003 18.6 6.5 45 34-78 15-68 (121)
283 3qhq_A CSN2, SAG0897 family cr 30.5 74 0.0025 21.7 4.2 50 16-67 145-199 (229)
284 4dik_A Flavoprotein; TM0755, e 29.9 1.7E+02 0.0058 21.6 7.9 56 42-98 278-334 (410)
285 1qle_D Cytochrome AA3, ccytoch 29.5 30 0.001 16.9 1.6 19 64-82 4-22 (43)
286 1nsj_A PRAI, phosphoribosyl an 29.4 1.2E+02 0.0042 20.0 5.1 40 33-74 53-92 (205)
287 3cnb_A DNA-binding response re 29.2 87 0.003 18.1 6.7 89 34-128 33-130 (143)
288 1oi7_A Succinyl-COA synthetase 29.0 1.2E+02 0.0041 21.2 5.3 56 35-92 66-122 (288)
289 3tla_A MCCF; serine protease, 29.0 1.6E+02 0.0054 21.6 6.0 61 32-92 41-117 (371)
290 3sr3_A Microcin immunity prote 28.9 1.3E+02 0.0045 21.6 5.5 59 33-92 12-87 (336)
291 2qv0_A Protein MRKE; structura 28.7 91 0.0031 18.2 5.6 72 53-126 50-125 (143)
292 3kto_A Response regulator rece 28.6 68 0.0023 18.7 3.5 78 47-127 39-125 (136)
293 1k8v_A Neuropeptide F; moniezi 28.4 30 0.001 16.7 1.4 14 114-128 26-39 (40)
294 2nn3_C Caspase-1; cysteine pro 28.4 1.1E+02 0.0039 21.8 5.1 49 34-83 60-121 (310)
295 2gkg_A Response regulator homo 28.3 74 0.0025 17.9 3.6 18 110-127 107-124 (127)
296 1jr2_A Uroporphyrinogen-III sy 27.9 59 0.002 22.5 3.5 71 21-92 144-218 (286)
297 8tfv_A Protein (thanatin); bac 27.9 19 0.00066 14.2 0.5 10 36-45 6-15 (21)
298 1hzm_A Dual specificity protei 27.9 30 0.001 21.3 1.9 37 33-69 91-137 (154)
299 3f4a_A Uncharacterized protein 27.1 19 0.00067 23.0 0.8 35 35-69 105-147 (169)
300 1zl0_A Hypothetical protein PA 27.1 1.6E+02 0.0054 21.0 5.6 47 46-92 33-88 (311)
301 2zay_A Response regulator rece 27.0 67 0.0023 18.9 3.3 67 57-126 51-126 (147)
302 3f6p_A Transcriptional regulat 27.0 91 0.0031 17.6 5.1 72 52-126 40-117 (120)
303 2lta_A De novo designed protei 33.0 13 0.00046 20.9 0.0 26 43-68 12-37 (110)
304 1fov_A Glutaredoxin 3, GRX3; a 27.0 74 0.0025 16.6 4.8 52 37-88 3-55 (82)
305 3ucx_A Short chain dehydrogena 26.9 1.5E+02 0.005 20.0 7.7 69 21-92 25-96 (264)
306 4b3f_X DNA-binding protein smu 26.8 70 0.0024 25.1 4.1 33 32-64 231-263 (646)
307 2xgj_A ATP-dependent RNA helic 26.7 1E+02 0.0034 26.0 5.1 37 33-69 128-164 (1010)
308 1srv_A Protein (groel (HSP60 c 26.7 1.2E+02 0.0042 19.0 5.9 72 9-81 28-102 (145)
309 4h1h_A LMO1638 protein; MCCF-l 26.5 1.7E+02 0.0057 20.9 5.7 44 47-91 32-85 (327)
310 1jq5_A Glycerol dehydrogenase; 26.5 1.8E+02 0.0062 20.9 6.2 48 35-82 32-84 (370)
311 3o8b_A HCV NS3 protease/helica 26.2 90 0.0031 24.9 4.5 64 34-108 257-324 (666)
312 3t6k_A Response regulator rece 26.2 1E+02 0.0035 17.9 5.0 71 54-127 44-123 (136)
313 2va8_A SSO2462, SKI2-type heli 26.2 84 0.0029 24.8 4.5 53 33-92 74-129 (715)
314 3imf_A Short chain dehydrogena 25.7 1.5E+02 0.0052 19.8 8.3 69 21-92 20-91 (257)
315 1jr5_A 10 kDa anti-sigma facto 25.5 23 0.00079 20.3 0.8 20 65-84 58-77 (90)
316 3m6m_D Sensory/regulatory prot 25.5 1.1E+02 0.0037 18.0 4.7 110 6-126 14-134 (143)
317 3h7a_A Short chain dehydrogena 25.4 1.5E+02 0.0053 19.7 7.6 69 21-92 21-91 (252)
318 1m72_A Caspase-1; caspase, cys 25.4 1.3E+02 0.0044 20.9 4.8 48 35-83 33-93 (272)
319 3vdp_A Recombination protein R 25.3 77 0.0026 21.4 3.5 62 35-97 93-163 (212)
320 2rdm_A Response regulator rece 25.1 1E+02 0.0035 17.5 5.3 67 58-129 50-124 (132)
321 3nhm_A Response regulator; pro 25.1 1E+02 0.0035 17.6 4.5 71 54-126 43-120 (133)
322 1cmk_I CAMP-dependent protein 24.7 20 0.0007 15.4 0.4 9 121-129 8-16 (26)
323 3osx_A 60 kDa chaperonin; alph 24.5 1.6E+02 0.0055 19.6 5.6 71 10-81 42-115 (201)
324 1wik_A Thioredoxin-like protei 24.0 1.1E+02 0.0037 17.5 6.1 46 35-80 15-66 (109)
325 3od5_A Caspase-6; caspase doma 23.8 1.4E+02 0.0047 20.8 4.8 50 33-83 20-83 (278)
326 3gaf_A 7-alpha-hydroxysteroid 23.8 1.7E+02 0.0057 19.6 7.6 69 21-92 26-97 (256)
327 1c25_A CDC25A; hydrolase, cell 23.7 25 0.00087 21.9 0.9 36 34-69 87-136 (161)
328 3sir_A Caspase; hydrolase; 2.6 23.6 93 0.0032 21.4 3.8 38 45-83 44-81 (259)
329 2pcq_A Putative dihydrodipicol 23.5 1.1E+02 0.0037 21.3 4.2 45 49-94 54-99 (283)
330 3hdg_A Uncharacterized protein 23.2 1.2E+02 0.004 17.5 4.6 68 57-127 50-124 (137)
331 3gl9_A Response regulator; bet 23.2 1.1E+02 0.0038 17.3 4.8 71 52-125 40-119 (122)
332 3cg0_A Response regulator rece 23.0 1.2E+02 0.004 17.5 3.9 66 58-126 54-126 (140)
333 3v8b_A Putative dehydrogenase, 22.6 1.9E+02 0.0065 19.7 8.3 68 22-92 43-113 (283)
334 3eb2_A Putative dihydrodipicol 22.5 73 0.0025 22.4 3.1 35 59-93 74-109 (300)
335 4e5s_A MCCFLIKE protein (BA_56 21.9 2.2E+02 0.0076 20.3 6.0 48 45-92 30-86 (331)
336 1ae1_A Tropinone reductase-I; 21.8 1.9E+02 0.0065 19.5 7.8 68 21-91 35-106 (273)
337 1mb3_A Cell division response 21.6 1.2E+02 0.004 17.0 4.1 69 57-127 44-120 (124)
338 3qiv_A Short-chain dehydrogena 21.5 1.8E+02 0.0062 19.1 7.9 69 21-92 23-94 (253)
339 3cfy_A Putative LUXO repressor 21.5 1.3E+02 0.0044 17.5 4.3 66 57-125 47-119 (137)
340 1z3i_X Similar to RAD54-like; 21.5 2.6E+02 0.009 21.9 6.4 56 34-91 114-177 (644)
341 3hdv_A Response regulator; PSI 21.5 1.3E+02 0.0043 17.3 4.8 66 59-127 53-126 (136)
342 1k68_A Phytochrome response re 21.5 1.2E+02 0.0043 17.2 5.4 67 57-126 54-129 (140)
343 2ql9_A Caspase-7; cysteine pro 21.2 1.7E+02 0.006 18.8 4.9 49 34-83 44-106 (173)
344 3sju_A Keto reductase; short-c 21.1 2E+02 0.0069 19.5 8.0 68 22-92 39-109 (279)
345 3qy9_A DHPR, dihydrodipicolina 21.1 2E+02 0.0069 19.5 6.0 60 35-99 55-114 (243)
346 4ibo_A Gluconate dehydrogenase 21.0 2E+02 0.0069 19.4 7.2 69 21-92 40-111 (271)
347 1qb0_A Protein (M-phase induce 20.9 40 0.0014 22.3 1.5 36 33-68 108-157 (211)
348 3tfo_A Putative 3-oxoacyl-(acy 20.9 2E+02 0.0069 19.4 8.0 69 21-92 18-89 (264)
349 2wci_A Glutaredoxin-4; redox-a 20.8 1.5E+02 0.0052 18.0 7.2 46 35-80 35-86 (135)
350 3n53_A Response regulator rece 20.8 1.3E+02 0.0046 17.3 4.9 69 55-126 43-120 (140)
351 3rqi_A Response regulator prot 20.4 1.6E+02 0.0056 18.2 5.1 70 53-125 46-122 (184)
352 3mwy_W Chromo domain-containin 20.3 2.2E+02 0.0074 23.0 5.8 58 32-92 284-353 (800)
353 2yxb_A Coenzyme B12-dependent 20.2 1.7E+02 0.0058 18.3 4.5 26 47-72 35-60 (161)
354 3pnu_A Dihydroorotase; TIM bar 20.2 99 0.0034 22.4 3.5 31 69-99 238-268 (359)
355 3tox_A Short chain dehydrogena 20.1 2.1E+02 0.0073 19.4 7.6 69 21-92 22-93 (280)
No 1
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=100.00 E-value=6e-32 Score=179.98 Aligned_cols=138 Identities=36% Similarity=0.523 Sum_probs=124.5
Q ss_pred CcCeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC
Q psy17637 4 NKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ 83 (150)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 83 (150)
..++.+.+.......+...|...+... ...++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cccceEEEEECChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 455677776666666666777766654 667999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 84 ECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 84 ~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+..|||+|+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.+++|++..+.
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~ 144 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEK 144 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGH
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHH
Confidence 999999999999999999999999999999999999999999999999999999987654
No 2
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2e-32 Score=183.87 Aligned_cols=136 Identities=35% Similarity=0.491 Sum_probs=122.7
Q ss_pred cCeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy17637 5 KGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
.++.+++.......+...|.+.+... +..++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 45666666666666667777777665 6679999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 85 CRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 85 ~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
..|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++|++..+
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 139 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHH
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChh
Confidence 9999999999999999999999999999999999999999999999999999998654
No 3
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.98 E-value=1.7e-31 Score=181.27 Aligned_cols=139 Identities=32% Similarity=0.543 Sum_probs=111.5
Q ss_pred CcCeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC
Q psy17637 4 NKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ 83 (150)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 83 (150)
.+++.+.+.......+...|++.+... .+..++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 17 ~~~i~q~~~~v~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 17 SENITQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCceEEEEEeCcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 456777776666666667777777664 4678999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 84 ECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 84 ~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+..|||||+++++|+|+|++++||++++|+++.+|.|++||+||.|+.|.+++|+++.+.
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 155 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGG
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhH
Confidence 999999999999999999999999999999999999999999999999999999987654
No 4
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.97 E-value=2.9e-31 Score=176.94 Aligned_cols=136 Identities=33% Similarity=0.549 Sum_probs=113.8
Q ss_pred CeeEEEeecchhh-HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy17637 6 GVAYTLVTDKDKE-FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
++.+.+....... +...|.+.+... ...++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 3444444433333 555666666554 6679999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 85 CRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 85 ~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
..|||||+++++|+|+|++++||++++|+++.+|.||+||+||.|+.|.+++++++.+.
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~ 139 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDV 139 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTH
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHH
Confidence 99999999999999999999999999999999999999999999999999999987754
No 5
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=5.5e-31 Score=177.16 Aligned_cols=137 Identities=29% Similarity=0.480 Sum_probs=117.1
Q ss_pred cCeeEEEeecchhh-HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC
Q psy17637 5 KGVAYTLVTDKDKE-FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ 83 (150)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 83 (150)
.++.+.+....... +...|...+... ...++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 45666665555433 556666655544 667999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCcccCCccCCcEEEEecCC------CChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 84 ECRILVATDVAARGLDIPHIRTVVNYDLA------RDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 84 ~~~vlv~T~~~~~Gidi~~~~~vi~~~~~------~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+..|||||+++++|+|+|++++||++++| .+..+|+||+||+||.|+.|.++.|++..+.
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~ 149 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDEL 149 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGH
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchH
Confidence 99999999999999999999999999999 8999999999999999999999999987653
No 6
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=3.2e-31 Score=180.67 Aligned_cols=136 Identities=34% Similarity=0.551 Sum_probs=118.8
Q ss_pred cCeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy17637 5 KGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
.++.+.+.......+...|++.+... ..++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 28 ~~i~q~~~~~~~~~K~~~L~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~ 104 (191)
T 2p6n_A 28 LDVIQEVEYVKEEAKMVYLLECLQKT---PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK 104 (191)
T ss_dssp CCSEEEEEECCGGGHHHHHHHHHTTS---CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred cCceEEEEEcChHHHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 45666666555566666777766553 458999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 85 CRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 85 ~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
..|||+|+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++|+++.+.
T Consensus 105 ~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~ 163 (191)
T 2p6n_A 105 KDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACD 163 (191)
T ss_dssp CSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSC
T ss_pred CEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchh
Confidence 99999999999999999999999999999999999999999999999999999987643
No 7
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.97 E-value=9e-31 Score=181.12 Aligned_cols=128 Identities=38% Similarity=0.495 Sum_probs=114.2
Q ss_pred ecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 13 TDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 13 ~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
......+...|.+.+... ...++||||++++.++.++..|...++.+..+||+|++++|..+++.|++|..+|||||+
T Consensus 12 ~~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 12 PAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp ECCTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred eCCHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 334444455666666554 678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 93 VAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 93 ~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
++++|+|+|++++||++++|+++..|.||+||+||.|+.|.+++|++..+
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~ 139 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRE 139 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGG
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhH
Confidence 99999999999999999999999999999999999999999999998765
No 8
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=8.1e-30 Score=184.35 Aligned_cols=133 Identities=37% Similarity=0.481 Sum_probs=113.8
Q ss_pred EEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEE
Q psy17637 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRIL 88 (150)
Q Consensus 9 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 88 (150)
.++.......+...|.+.+... ...++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|..+||
T Consensus 5 ~~~i~~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 5 EEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp EEEEECCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred EEEEECCHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 3334444444555666666554 47899999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 89 VATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 89 v~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|||+++++|+|+|++++||++++|++...|+||+||+||.|+.|.+++|++..+.
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~ 137 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRER 137 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTH
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHH
Confidence 9999999999999999999999999999999999999999999999999988763
No 9
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.93 E-value=1.1e-31 Score=179.77 Aligned_cols=137 Identities=37% Similarity=0.507 Sum_probs=117.6
Q ss_pred CeeEEEeecch-hhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy17637 6 GVAYTLVTDKD-KEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 6 ~~~~~~~~~~~-~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
++.+.+..... ..+...|.+.+.. ....++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 34444444443 3344455555544 35679999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCc
Q psy17637 85 CRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144 (150)
Q Consensus 85 ~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 144 (150)
..|||||+++++|+|+|++++||++++|+++..|.|++||+||.|+.|.++++++..+..
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 140 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 140 (170)
Confidence 999999999999999999999999999999999999999999999999999998876543
No 10
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.96 E-value=3.8e-28 Score=183.61 Aligned_cols=137 Identities=34% Similarity=0.521 Sum_probs=120.4
Q ss_pred CeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCc
Q psy17637 6 GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQEC 85 (150)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 85 (150)
++...+.......+...+++.+... ..++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.
T Consensus 275 ~i~~~~~~~~~~~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~ 351 (434)
T 2db3_A 275 DVKQTIYEVNKYAKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSM 351 (434)
T ss_dssp TEEEEEEECCGGGHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSC
T ss_pred ccceEEEEeCcHHHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 4444444455555566777777664 2349999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCcc
Q psy17637 86 RILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145 (150)
Q Consensus 86 ~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~ 145 (150)
.|||||+++++|+|+|++++||+|++|.+..+|+||+||+||.|+.|.+++|+++.+...
T Consensus 352 ~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~ 411 (434)
T 2db3_A 352 KVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRA 411 (434)
T ss_dssp SEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGG
T ss_pred cEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHH
Confidence 999999999999999999999999999999999999999999999999999998665443
No 11
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.95 E-value=1.9e-27 Score=183.47 Aligned_cols=134 Identities=25% Similarity=0.404 Sum_probs=118.7
Q ss_pred cCeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy17637 5 KGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
+++.+....... ....+++.+... +..++||||+|++.++.+++.|...++.+..+||+|++++|..+++.|++|+
T Consensus 211 ~~l~~~v~~~~~--~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 286 (523)
T 1oyw_A 211 PNIRYMLMEKFK--PLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD 286 (523)
T ss_dssp TTEEEEEEECSS--HHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CceEEEEEeCCC--HHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCC
Confidence 445555544332 334677777654 6779999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 85 CRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 85 ~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
..|||||+++++|+|+|++++||++++|+++++|+|++||+||.|.++.++++++..+
T Consensus 287 ~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d 344 (523)
T 1oyw_A 287 LQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (523)
T ss_dssp CSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHH
T ss_pred CeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHH
Confidence 9999999999999999999999999999999999999999999999999999997654
No 12
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.95 E-value=1.8e-27 Score=185.78 Aligned_cols=137 Identities=19% Similarity=0.318 Sum_probs=119.5
Q ss_pred cCeeEEEeecc--hhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc
Q psy17637 5 KGVAYTLVTDK--DKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82 (150)
Q Consensus 5 ~~~~~~~~~~~--~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 82 (150)
+++.|...... .......+++.+... ....++||||++++.++.+++.|...++.+..+||+|++++|..+++.|++
T Consensus 237 ~nl~~~v~~~~~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~ 315 (591)
T 2v1x_A 237 PNLYYEVRQKPSNTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSA 315 (591)
T ss_dssp TTEEEEEEECCSSHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cccEEEEEeCCCcHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc
Confidence 44555544332 234455666666543 467899999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 83 QECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 83 g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
|+.+|||||+++++|+|+|++++||++++|.+++.|+|++||+||.|.++.++++++..|
T Consensus 316 g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D 375 (591)
T 2v1x_A 316 NEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGD 375 (591)
T ss_dssp TSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHH
T ss_pred CCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHH
Confidence 999999999999999999999999999999999999999999999999999999987654
No 13
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=178.44 Aligned_cols=138 Identities=33% Similarity=0.547 Sum_probs=118.0
Q ss_pred CeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCc
Q psy17637 6 GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQEC 85 (150)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 85 (150)
++.+.+.......+...+.+.+... ....++||||++++.++.+++.|...++.+..+||++++++|.++++.|++|+.
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 327 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 327 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSS
T ss_pred CceEEEEEeccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCC
Confidence 3444444444444445555555544 567789999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCc
Q psy17637 86 RILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144 (150)
Q Consensus 86 ~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 144 (150)
.|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.+++|+++.+..
T Consensus 328 ~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (417)
T 2i4i_A 328 PILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 386 (417)
T ss_dssp CEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGG
T ss_pred CEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHH
Confidence 99999999999999999999999999999999999999999999999999999876543
No 14
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.95 E-value=4e-27 Score=174.83 Aligned_cols=135 Identities=34% Similarity=0.478 Sum_probs=119.2
Q ss_pred eeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCce
Q psy17637 7 VAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECR 86 (150)
Q Consensus 7 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 86 (150)
+...+.......+...+.+.+... ...++||||++++.++.+++.|...++.+..+||++++++|..+++.|++|+..
T Consensus 225 ~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 302 (391)
T 1xti_A 225 LQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 302 (391)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCS
T ss_pred ceEEEEEcCchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCc
Confidence 344444444444555666666554 678999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 87 ILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 87 vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|||||+++++|+|+|++++||++++|++...|.||+||+||.|+.|.+++++++.+.
T Consensus 303 vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 303 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccch
Confidence 999999999999999999999999999999999999999999999999999987644
No 15
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.95 E-value=1.4e-26 Score=172.65 Aligned_cols=135 Identities=29% Similarity=0.465 Sum_probs=117.1
Q ss_pred eeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCce
Q psy17637 7 VAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECR 86 (150)
Q Consensus 7 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 86 (150)
+...........+...+...+... ...++||||++++.++.+++.|...++.+..+||+|++++|..+++.|++|+..
T Consensus 233 ~~~~~~~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 310 (400)
T 1s2m_A 233 ITQYYAFVEERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR 310 (400)
T ss_dssp EEEEEEECCGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS
T ss_pred ceeEEEEechhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCc
Confidence 333333333334444454444443 667999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 87 ILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 87 vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|||||+++++|+|+|++++||++++|++...|.||+||+||.|+.|.+++++++.+.
T Consensus 311 vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~ 367 (400)
T 1s2m_A 311 TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDR 367 (400)
T ss_dssp EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGH
T ss_pred EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchH
Confidence 999999999999999999999999999999999999999999999999999988754
No 16
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.94 E-value=6.4e-27 Score=175.04 Aligned_cols=123 Identities=34% Similarity=0.588 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccC
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGL 98 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 98 (150)
+...+.+.+... ...++||||++++.++.+++.|...++.+..+||++++++|..+++.|++|+..|||+|+++++|+
T Consensus 263 k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 340 (410)
T 2j0s_A 263 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGL 340 (410)
T ss_dssp HHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSC
T ss_pred HHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcC
Confidence 444555555444 556899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 99 DIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 99 di~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|+|++++||++++|++...|+||+||+||.|+.|.+++|+++.+.
T Consensus 341 di~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 385 (410)
T 2j0s_A 341 DVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 385 (410)
T ss_dssp CCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGH
T ss_pred CcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHH
Confidence 999999999999999999999999999999999999999987653
No 17
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.94 E-value=6.5e-27 Score=173.56 Aligned_cols=136 Identities=36% Similarity=0.581 Sum_probs=116.3
Q ss_pred eeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCce
Q psy17637 7 VAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECR 86 (150)
Q Consensus 7 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 86 (150)
+...............++..+... ....++||||++++.++.+++.|...++.+..+||+|++++|.++++.|++|+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 295 (395)
T 3pey_A 217 IKQLYMDCKNEADKFDVLTELYGL-MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSK 295 (395)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHTT-TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCC
T ss_pred ccEEEEEcCchHHHHHHHHHHHHh-ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCC
Confidence 333344433333233444455444 3667999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCCccCCcEEEEecCCC------ChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 87 ILVATDVAARGLDIPHIRTVVNYDLAR------DIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 87 vlv~T~~~~~Gidi~~~~~vi~~~~~~------~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|||||+++++|+|+|++++||++++|+ ++..|+||+||+||.|+.+.+++++...+.
T Consensus 296 vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 358 (395)
T 3pey_A 296 VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358 (395)
T ss_dssp EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHH
Confidence 999999999999999999999999999 999999999999999999999999986543
No 18
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.94 E-value=7.9e-27 Score=174.20 Aligned_cols=126 Identities=34% Similarity=0.525 Sum_probs=112.7
Q ss_pred chhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCC
Q psy17637 15 KDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVA 94 (150)
Q Consensus 15 ~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 94 (150)
....+...+...+... ...++||||++++.++.++..|...++.+..+||+|++++|..+++.|++|+.+|||||+++
T Consensus 249 ~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 326 (412)
T 3fht_A 249 SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVC 326 (412)
T ss_dssp SHHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGG
T ss_pred ChHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCcc
Confidence 3344455555555544 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccCCcEEEEecCC------CChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 95 ARGLDIPHIRTVVNYDLA------RDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 95 ~~Gidi~~~~~vi~~~~~------~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
++|+|+|++++||++++| .+..+|+||+||+||.|+.|.++++++..+
T Consensus 327 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 327 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp TSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred ccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChh
Confidence 999999999999999999 467899999999999999999999998654
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=4.6e-26 Score=167.50 Aligned_cols=134 Identities=35% Similarity=0.554 Sum_probs=118.1
Q ss_pred eeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCce
Q psy17637 7 VAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECR 86 (150)
Q Consensus 7 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 86 (150)
+...........+...+...+. ....++||||++++.++.+++.|...+..+..+||++++++|.++++.|++|+..
T Consensus 214 ~~~~~~~~~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 290 (367)
T 1hv8_A 214 IEQSYVEVNENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR 290 (367)
T ss_dssp SEEEEEECCGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS
T ss_pred ceEEEEEeChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCe
Confidence 3334444444455556666554 3677899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 87 ILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 87 vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|||+|+++++|+|+|++++||++++|+++.+|.|++||+||.|++|.+++++++.+.
T Consensus 291 vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 347 (367)
T 1hv8_A 291 ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREY 347 (367)
T ss_dssp EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSH
T ss_pred EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHH
Confidence 999999999999999999999999999999999999999999999999999987654
No 20
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.94 E-value=9.2e-27 Score=174.05 Aligned_cols=123 Identities=35% Similarity=0.634 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccC
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGL 98 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 98 (150)
+...+...+... ...++||||++++.++.+++.|...++.+..+||+|++++|..+++.|++|+.+|||||+++++|+
T Consensus 267 ~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 344 (414)
T 3eiq_A 267 KLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGI 344 (414)
T ss_dssp HHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--C
T ss_pred HHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCC
Confidence 444555555443 667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 99 DIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 99 di~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|+|++++||++++|.+...|+||+||+||.|+.|.+++++++.+.
T Consensus 345 dip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 389 (414)
T 3eiq_A 345 DVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDK 389 (414)
T ss_dssp CGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHH
T ss_pred CccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHH
Confidence 999999999999999999999999999999999999999987654
No 21
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.94 E-value=2.6e-26 Score=178.16 Aligned_cols=112 Identities=29% Similarity=0.528 Sum_probs=106.5
Q ss_pred CCCCCeeEEehhhhhHHHHHhhcccc---CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEE
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVK---EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~ 108 (150)
....++||||++++.++.++..|... ++.+..+||+|++.+|..+++.|++|+..|||||+++++|+|+|++++||+
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~ 416 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 416 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE
Confidence 46779999999999999999999876 889999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 109 ~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+++|.++.+|+||+||+||.|+.|.+++++++.+.
T Consensus 417 ~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 451 (563)
T 3i5x_A 417 IGVPSELANYIHRIGRTARSGKEGSSVLFICKDEL 451 (563)
T ss_dssp ESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred ECCCCchhhhhhhcCccccCCCCceEEEEEchhHH
Confidence 99999999999999999999999999999987653
No 22
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.94 E-value=4.3e-26 Score=177.74 Aligned_cols=120 Identities=28% Similarity=0.535 Sum_probs=109.4
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcccc---CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccC
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK---EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGL 98 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 98 (150)
.+...+... ....++||||++++.++.++..|... ++.+..+||+|++.+|.++++.|++|+..|||||+++++|+
T Consensus 277 ~l~~~~~~~-~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gi 355 (579)
T 3sqw_A 277 HIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM 355 (579)
T ss_dssp HHHHHHHHT-TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSC
T ss_pred HHHHHHhhc-CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCC
Confidence 333344332 45779999999999999999999876 88999999999999999999999999999999999999999
Q ss_pred CccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCC
Q psy17637 99 DIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142 (150)
Q Consensus 99 di~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~ 142 (150)
|+|++++||++++|.++..|+||+||+||.|+.|.+++++++.+
T Consensus 356 Dip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e 399 (579)
T 3sqw_A 356 DFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDE 399 (579)
T ss_dssp CCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGG
T ss_pred CcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccH
Confidence 99999999999999999999999999999999999999998765
No 23
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=2.1e-25 Score=168.61 Aligned_cols=126 Identities=25% Similarity=0.364 Sum_probs=110.3
Q ss_pred HHHHHHHHHhcc--CCCCCeeEEehhhhhHHHHHhhccccCceEEEecC--------CCCHHHHHHHHHHhhcCCceEEE
Q psy17637 20 AGHLVRNLEGAN--QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHG--------DMDQSERNSVITKFKRQECRILV 89 (150)
Q Consensus 20 ~~~ll~~l~~~~--~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~--------~~~~~~r~~~~~~f~~g~~~vlv 89 (150)
...+.+.+.... ....++||||++++.++.+++.|...++.+..+|| +|++++|.++++.|++|+..|||
T Consensus 345 ~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv 424 (494)
T 1wp9_A 345 MDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLV 424 (494)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEE
Confidence 344444444421 36789999999999999999999999999999999 99999999999999999999999
Q ss_pred EcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCCccc
Q psy17637 90 ATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGE 146 (150)
Q Consensus 90 ~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~~ 146 (150)
+|+++++|+|+|++++||++++|+++..|.|++||+||.|+ +.++.++++.+.++.
T Consensus 425 ~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee~ 480 (494)
T 1wp9_A 425 ATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDEA 480 (494)
T ss_dssp ECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHHH
T ss_pred ECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHHH
Confidence 99999999999999999999999999999999999999997 999999998876554
No 24
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=1.5e-24 Score=157.90 Aligned_cols=110 Identities=38% Similarity=0.617 Sum_probs=102.4
Q ss_pred HHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCC
Q psy17637 24 VRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103 (150)
Q Consensus 24 l~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~ 103 (150)
+..+.. ....++||||++++.++.+++.|. .+..+||++++.+|.++++.|++|+..|||||+++++|+|+|++
T Consensus 212 ~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~ 285 (337)
T 2z0m_A 212 VQALRE--NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLV 285 (337)
T ss_dssp HHHHHT--CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCB
T ss_pred HHHHHh--CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCC
Confidence 344444 367899999999999999999987 57889999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCChhHHHHhhccccCCCCccEEEEEEe
Q psy17637 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139 (150)
Q Consensus 104 ~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~ 139 (150)
++||++++|+++..|.|++||+||.|+.+.+++++.
T Consensus 286 ~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 286 EKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp SEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred CEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 999999999999999999999999999999999998
No 25
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.92 E-value=9.9e-27 Score=177.54 Aligned_cols=113 Identities=36% Similarity=0.584 Sum_probs=0.0
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLA 112 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~ 112 (150)
...++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 332 ~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p 411 (479)
T 3fmp_B 332 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 411 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCC
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C------ChhHHHHhhccccCCCCccEEEEEEecCCCcc
Q psy17637 113 R------DIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145 (150)
Q Consensus 113 ~------~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~ 145 (150)
. +...|+||+||+||.|..|.+++|++..+...
T Consensus 412 ~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~ 450 (479)
T 3fmp_B 412 VDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMN 450 (479)
T ss_dssp ---------------------------------------
T ss_pred CCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHH
Confidence 4 66899999999999999999999998765433
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.91 E-value=1.7e-25 Score=172.06 Aligned_cols=124 Identities=33% Similarity=0.511 Sum_probs=90.5
Q ss_pred HHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCC
Q psy17637 20 AGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLD 99 (150)
Q Consensus 20 ~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 99 (150)
...+...+.. ....++||||+++++++.++..|...+..+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 345 ~~~l~~ll~~--~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiD 422 (508)
T 3fho_A 345 YNVLVELYGL--LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGID 422 (508)
T ss_dssp HHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CC
T ss_pred HHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCC
Confidence 3344444433 36689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEecCC------CChhHHHHhhccccCCCCccEEEEEEecCCCcc
Q psy17637 100 IPHIRTVVNYDLA------RDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145 (150)
Q Consensus 100 i~~~~~vi~~~~~------~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~ 145 (150)
+|++++||++++| .++..|+|++||+||.|+.|.+++++...+...
T Consensus 423 ip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~ 474 (508)
T 3fho_A 423 VSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWE 474 (508)
T ss_dssp CTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSS
T ss_pred ccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHH
Confidence 9999999999999 789999999999999999999999998665433
No 27
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.91 E-value=1.8e-26 Score=171.42 Aligned_cols=112 Identities=37% Similarity=0.635 Sum_probs=0.0
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLA 112 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~ 112 (150)
...++||||++++.++.+++.|...++.+..+||++++++|..+++.|++|+..|||||+++++|+|+|++++||++++|
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p 337 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLP 337 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhhccccCCCCccEEEEEEecCCCc
Q psy17637 113 RDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144 (150)
Q Consensus 113 ~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~ 144 (150)
.++..|.||+||+||.|+.|.+++++++.+..
T Consensus 338 ~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 369 (394)
T 1fuu_A 338 ANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 369 (394)
T ss_dssp --------------------------------
T ss_pred CCHHHHHHHcCcccCCCCCceEEEEEchhHHH
Confidence 99999999999999999999999999877543
No 28
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.91 E-value=4.2e-25 Score=170.51 Aligned_cols=123 Identities=22% Similarity=0.276 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcc--CCCCCeeEEehhhhhHHHHHhhcccc------------CceEEEecCCCCHHHHHHHHHHhhc-C
Q psy17637 19 FAGHLVRNLEGAN--QEVPPALMNLAMQLNAEELANSLTVK------------EYDVLLLHGDMDQSERNSVITKFKR-Q 83 (150)
Q Consensus 19 ~~~~ll~~l~~~~--~~~~~~ivf~~~~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g 83 (150)
+...|.+.+.... ....++||||++++.++.++..|... |.....+||+|++++|.++++.|++ |
T Consensus 373 K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g 452 (556)
T 4a2p_A 373 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 452 (556)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-----------------------------
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccC
Confidence 3344555554321 46789999999999999999999765 4556677888999999999999999 9
Q ss_pred CceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 84 ECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 84 ~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+.+|||||+++++|+|+|++++||+||+|+++..|+||+|| ||. .++.++.|+++.+.
T Consensus 453 ~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 453 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp -CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred ceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 99999999999999999999999999999999999999999 998 68899999887654
No 29
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.91 E-value=2.3e-24 Score=153.90 Aligned_cols=128 Identities=16% Similarity=0.248 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcccc-CceEEEecCCCCHHHHHHHHHHhhcC-Cce-EEEEcCCCc
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK-EYDVLLLHGDMDQSERNSVITKFKRQ-ECR-ILVATDVAA 95 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vlv~T~~~~ 95 (150)
++..+.+.+......+.++||||++...++.+...|... ++.+..+||++++++|..+++.|+++ ... +|++|++++
T Consensus 97 K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g 176 (271)
T 1z5z_A 97 KMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGG 176 (271)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTC
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhc
Confidence 444555555444346789999999999999999999875 89999999999999999999999998 666 789999999
Q ss_pred ccCCccCCcEEEEecCCCChhHHHHhhccccCCCCcc--EEEEEEecCCCccc
Q psy17637 96 RGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG--VAYTLVTDKDKDGE 146 (150)
Q Consensus 96 ~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~--~~~~~~~~~~~~~~ 146 (150)
+|+|++.+++||+||+|+++..|.|++||++|.|+.+ .++.+++....++.
T Consensus 177 ~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~ 229 (271)
T 1z5z_A 177 FGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEK 229 (271)
T ss_dssp CCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHH
T ss_pred CCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHH
Confidence 9999999999999999999999999999999999865 45777777655443
No 30
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.90 E-value=8.3e-24 Score=168.06 Aligned_cols=126 Identities=18% Similarity=0.215 Sum_probs=110.8
Q ss_pred hhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCc
Q psy17637 16 DKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAA 95 (150)
Q Consensus 16 ~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 95 (150)
...+...|++.+......+.++||||+|++.++.|+..|...|+++..+||++++.++..+.+.|+.| .|+|||++++
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAg 491 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAG 491 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSS
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccc
Confidence 34456677777765434677999999999999999999999999999999999888887666666655 6999999999
Q ss_pred ccCCcc--------CCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 96 RGLDIP--------HIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 96 ~Gidi~--------~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+|+|++ +..+||+++.|.+...|.|++||+||.|++|.+++|++.+|.
T Consensus 492 RG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 492 RGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred cCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 999999 788999999999999999999999999999999999998765
No 31
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.90 E-value=5.9e-24 Score=168.48 Aligned_cols=104 Identities=28% Similarity=0.384 Sum_probs=90.0
Q ss_pred CCCeeEEehhhhhHHHHHhhcccc------CceEEEecCC--------CCHHHHHHHHHHhhcCCceEEEEcCCCcccCC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVK------EYDVLLLHGD--------MDQSERNSVITKFKRQECRILVATDVAARGLD 99 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 99 (150)
..++||||++++.++.+++.|... |+++..+||+ |++.+|.++++.|++|+.+|||||+++++|+|
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 789999999999999999999876 8999999999 99999999999999999999999999999999
Q ss_pred ccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEec
Q psy17637 100 IPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140 (150)
Q Consensus 100 i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~ 140 (150)
+|++++||+||+|+|+..|+||+||+||.| .+++++..
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999999999977665 34444443
No 32
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.90 E-value=1.8e-23 Score=165.00 Aligned_cols=123 Identities=22% Similarity=0.331 Sum_probs=112.4
Q ss_pred HHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCC
Q psy17637 20 AGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLD 99 (150)
Q Consensus 20 ~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 99 (150)
...++..+......+.++||||+|+..++.+++.|...++++..+||++++.+|.++++.|+.|+..|||||+.+++|+|
T Consensus 431 ~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlD 510 (661)
T 2d7d_A 431 IDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLD 510 (661)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCC
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcc
Confidence 44666777665456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEecC-----CCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 100 IPHIRTVVNYDL-----ARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 100 i~~~~~vi~~~~-----~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+|++++||+++. |.+..+|+||+||+||. ..|.+++++++.+.
T Consensus 511 ip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 511 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITK 558 (661)
T ss_dssp CTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCH
T ss_pred cCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCH
Confidence 999999999997 89999999999999998 58999999887654
No 33
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.90 E-value=1.8e-23 Score=165.08 Aligned_cols=123 Identities=22% Similarity=0.314 Sum_probs=111.5
Q ss_pred HHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCC
Q psy17637 20 AGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLD 99 (150)
Q Consensus 20 ~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 99 (150)
...++..+......+.++||||+|+..++.+++.|...++++..+||++++.+|.++++.|+.|++.|||||+.+++|+|
T Consensus 425 ~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlD 504 (664)
T 1c4o_A 425 ILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLD 504 (664)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCC
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCcc
Confidence 44666666655446789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEecC-----CCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 100 IPHIRTVVNYDL-----ARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 100 i~~~~~vi~~~~-----~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+|++++||+++. |.+..+|+|++||+||.+ .|.++++++..+.
T Consensus 505 ip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 505 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSE 552 (664)
T ss_dssp CTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCH
T ss_pred CCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCH
Confidence 999999999997 889999999999999996 7899998877643
No 34
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.90 E-value=1.6e-24 Score=166.97 Aligned_cols=110 Identities=20% Similarity=0.308 Sum_probs=78.0
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccC------------ceEEEecCCCCHHHHHHHHHHhhc-CCceEEEEcCCCcccC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKE------------YDVLLLHGDMDQSERNSVITKFKR-QECRILVATDVAARGL 98 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gi 98 (150)
.+..++||||++++.++.++..|...+ .....+||+|++++|.++++.|++ |+.+|||||+++++|+
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gl 466 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGI 466 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCE
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCC
Confidence 356899999999999999999997653 344555679999999999999999 9999999999999999
Q ss_pred CccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 99 DIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 99 di~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|+|++++||+||+|+++..|+||+|| ||. ..+.++.|+++.+.
T Consensus 467 Dlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 467 DIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADV 509 (555)
T ss_dssp ETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHH
T ss_pred ccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCH
Confidence 99999999999999999999999999 988 78999999887644
No 35
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.89 E-value=1.3e-22 Score=159.00 Aligned_cols=127 Identities=21% Similarity=0.275 Sum_probs=109.3
Q ss_pred chhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCC
Q psy17637 15 KDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVA 94 (150)
Q Consensus 15 ~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 94 (150)
....+...++..+......+.|+||||+|++.++.++..|...++++..+||+..+.++..+...++.| .|+|||+++
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmA 532 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMA 532 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTT
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchh
Confidence 344566688888876545678999999999999999999999999999999996555555555556555 699999999
Q ss_pred cccCCcc--------CCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 95 ARGLDIP--------HIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 95 ~~Gidi~--------~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
++|+|++ +..+||+++.|.+...|.|++||+||.|++|.+++|++.+|.
T Consensus 533 gRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 533 GRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred hCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 9999997 667999999999999999999999999999999999998864
No 36
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.89 E-value=1.2e-23 Score=169.12 Aligned_cols=123 Identities=22% Similarity=0.276 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhc--cCCCCCeeEEehhhhhHHHHHhhcccc------------CceEEEecCCCCHHHHHHHHHHhhc-C
Q psy17637 19 FAGHLVRNLEGA--NQEVPPALMNLAMQLNAEELANSLTVK------------EYDVLLLHGDMDQSERNSVITKFKR-Q 83 (150)
Q Consensus 19 ~~~~ll~~l~~~--~~~~~~~ivf~~~~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g 83 (150)
++..|.+.+... ..+..++||||++++.++.++..|... |.....+||+|++.+|..+++.|++ |
T Consensus 614 K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g 693 (797)
T 4a2q_A 614 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (797)
T ss_dssp HHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccC
Confidence 344455555431 146789999999999999999999653 5556777899999999999999999 9
Q ss_pred CceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 84 ECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 84 ~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+++|||||+++++|+|+|++++||+||+|+++..|+||+|| ||. ..+.++.|++..+.
T Consensus 694 ~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred CceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 99999999999999999999999999999999999999999 999 68899999877544
No 37
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.89 E-value=7.3e-24 Score=167.89 Aligned_cols=122 Identities=20% Similarity=0.299 Sum_probs=73.1
Q ss_pred HHHHHHHHHhc--cCCCCCeeEEehhhhhHHHHHhhccccC----ceEEEe--------cCCCCHHHHHHHHHHhhc-CC
Q psy17637 20 AGHLVRNLEGA--NQEVPPALMNLAMQLNAEELANSLTVKE----YDVLLL--------HGDMDQSERNSVITKFKR-QE 84 (150)
Q Consensus 20 ~~~ll~~l~~~--~~~~~~~ivf~~~~~~~~~l~~~L~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-g~ 84 (150)
...|.+.+... ..+..++||||++++.++.+++.|...+ +++..+ ||+|++++|.++++.|++ |+
T Consensus 382 ~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~ 461 (696)
T 2ykg_A 382 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 461 (696)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------C
T ss_pred HHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCC
Confidence 33444444432 1356799999999999999999998876 788888 559999999999999998 99
Q ss_pred ceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 85 CRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 85 ~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
.+|||||+++++|+|+|++++||+||+|+++.+|+||+|| ||. +.+.++.+++..+.
T Consensus 462 ~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 462 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGV 518 (696)
T ss_dssp CSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHH
T ss_pred ccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCH
Confidence 9999999999999999999999999999999999999999 998 67888888876543
No 38
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.88 E-value=1.3e-22 Score=165.75 Aligned_cols=124 Identities=20% Similarity=0.282 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccc-cCceEEEecCCCCHHHHHHHHHHhhcCC--ceEEEEcCCCc
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV-KEYDVLLLHGDMDQSERNSVITKFKRQE--CRILVATDVAA 95 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~~~~ 95 (150)
+...+.+.+.. ....++||||++++.++.++..|.. .++++..+||+|++.+|..+++.|++|+ ++|||||++++
T Consensus 490 K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~ 567 (968)
T 3dmq_A 490 RVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGS 567 (968)
T ss_dssp HHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTT
T ss_pred HHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhh
Confidence 44556666655 4778999999999999999999984 5999999999999999999999999998 99999999999
Q ss_pred ccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccE--EEEEEecCCCc
Q psy17637 96 RGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGV--AYTLVTDKDKD 144 (150)
Q Consensus 96 ~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~--~~~~~~~~~~~ 144 (150)
+|+|+|++++||++++|+++..|.|++||+||.|+.+. ++.++.....+
T Consensus 568 ~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~e 618 (968)
T 3dmq_A 568 EGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQ 618 (968)
T ss_dssp CSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHH
T ss_pred cCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHH
Confidence 99999999999999999999999999999999998774 44445554433
No 39
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.88 E-value=2.4e-22 Score=150.66 Aligned_cols=121 Identities=26% Similarity=0.317 Sum_probs=101.0
Q ss_pred CeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEE-EecCCCCHHHHHHHHHHhhcCC
Q psy17637 6 GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVL-LLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
++...+....... .+.+.+... ..++||||++++.++.++..|...++.+. .+||. +|+ ++.|++|+
T Consensus 230 ~i~~~~~~~~~~~---~l~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~ 297 (414)
T 3oiy_A 230 NITHVRISSRSKE---KLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGK 297 (414)
T ss_dssp SEEEEEESSCCHH---HHHHHHHHH---CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTS
T ss_pred cchheeeccCHHH---HHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCC
Confidence 3444444443333 344444432 37899999999999999999999999998 89985 333 99999999
Q ss_pred ceEEEE----cCCCcccCCccC-CcEEEEecCC--CChhHHHHhhccccCCC----CccEEEEEE
Q psy17637 85 CRILVA----TDVAARGLDIPH-IRTVVNYDLA--RDIDTHTHRIGRTGRAG----NKGVAYTLV 138 (150)
Q Consensus 85 ~~vlv~----T~~~~~Gidi~~-~~~vi~~~~~--~~~~~~~q~~GR~~R~g----~~~~~~~~~ 138 (150)
.+|||| |+++++|+|+|+ +++||++++| .+..+|+||+||+||.| ..|.+++++
T Consensus 298 ~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 298 INILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp CSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred CeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 999999 999999999999 9999999999 99999999999999987 468888888
No 40
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.88 E-value=2.2e-22 Score=159.74 Aligned_cols=127 Identities=19% Similarity=0.233 Sum_probs=113.4
Q ss_pred hhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCc
Q psy17637 16 DKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAA 95 (150)
Q Consensus 16 ~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 95 (150)
...+...+++.+......+.|+||||+|++.++.|+..|...|+++..+||.+.+.++..+.+.|+.| .|+|||++++
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAg 500 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAG 500 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEeccccc
Confidence 34566678887766545778999999999999999999999999999999999888888888888887 6999999999
Q ss_pred ccCCccCC-------------------------------------cEEEEecCCCChhHHHHhhccccCCCCccEEEEEE
Q psy17637 96 RGLDIPHI-------------------------------------RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138 (150)
Q Consensus 96 ~Gidi~~~-------------------------------------~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~ 138 (150)
+|+|++.. .+||+++.|.+...|.|++||+||.|++|.+.+|+
T Consensus 501 RGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fl 580 (853)
T 2fsf_A 501 RGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYL 580 (853)
T ss_dssp SCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred CCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEe
Confidence 99999863 59999999999999999999999999999999999
Q ss_pred ecCCCc
Q psy17637 139 TDKDKD 144 (150)
Q Consensus 139 ~~~~~~ 144 (150)
+.+|..
T Consensus 581 s~eD~l 586 (853)
T 2fsf_A 581 SMEDAL 586 (853)
T ss_dssp ETTSGG
T ss_pred cccHHH
Confidence 987643
No 41
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.8e-22 Score=164.11 Aligned_cols=120 Identities=19% Similarity=0.286 Sum_probs=105.7
Q ss_pred HHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCc---------------------------------------e
Q psy17637 20 AGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEY---------------------------------------D 60 (150)
Q Consensus 20 ~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~---------------------------------------~ 60 (150)
...++..+... ...++||||++++.++.++..|...++ .
T Consensus 331 l~~l~~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 408 (1010)
T 2xgj_A 331 IYKIVKMIWKK--KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRG 408 (1010)
T ss_dssp HHHHHHHHHHH--TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCC
Confidence 34466666554 556899999999999999999976433 2
Q ss_pred EEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEE----ecC----CCChhHHHHhhccccCCCC--
Q psy17637 61 VLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN----YDL----ARDIDTHTHRIGRTGRAGN-- 130 (150)
Q Consensus 61 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~----~~~----~~~~~~~~q~~GR~~R~g~-- 130 (150)
+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ ||. |.++.+|.||+||+||.|.
T Consensus 409 I~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~ 488 (1010)
T 2xgj_A 409 IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDD 488 (1010)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCS
T ss_pred eeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCC
Confidence 789999999999999999999999999999999999999999999999 998 8899999999999999996
Q ss_pred ccEEEEEEecC
Q psy17637 131 KGVAYTLVTDK 141 (150)
Q Consensus 131 ~~~~~~~~~~~ 141 (150)
.|.+++++++.
T Consensus 489 ~G~vi~l~~~~ 499 (1010)
T 2xgj_A 489 RGIVIMMIDEK 499 (1010)
T ss_dssp SEEEEEEECSC
T ss_pred ceEEEEEECCC
Confidence 48999999865
No 42
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.88 E-value=7.3e-23 Score=166.84 Aligned_cols=123 Identities=22% Similarity=0.276 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhcc--CCCCCeeEEehhhhhHHHHHhhcccc------------CceEEEecCCCCHHHHHHHHHHhhc-C
Q psy17637 19 FAGHLVRNLEGAN--QEVPPALMNLAMQLNAEELANSLTVK------------EYDVLLLHGDMDQSERNSVITKFKR-Q 83 (150)
Q Consensus 19 ~~~~ll~~l~~~~--~~~~~~ivf~~~~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g 83 (150)
++..|.+.+.... ....++||||++++.++.|+..|... |.....+||+|++.+|.++++.|++ |
T Consensus 614 K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g 693 (936)
T 4a2w_A 614 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (936)
T ss_dssp HHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccC
Confidence 4445555555431 45789999999999999999999865 5556677899999999999999999 9
Q ss_pred CceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 84 ECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 84 ~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+++|||||+++++|+|+|++++||+||+|+|+..|+||+|| ||. ..+.++.+++..+.
T Consensus 694 ~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 99999999999999999999999999999999999999999 998 57888888876543
No 43
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.88 E-value=4.9e-23 Score=155.98 Aligned_cols=101 Identities=23% Similarity=0.296 Sum_probs=86.8
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEE-----
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN----- 108 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~----- 108 (150)
..++||||++++.++.+++.|...++++..+||. +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~----~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~ 251 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK----TFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAF 251 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS----SCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch----hHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccc
Confidence 5799999999999999999999999999999993 688999999999999999999999999999 999986
Q ss_pred --------------ecCCCChhHHHHhhccccCC-CCccEEEEEEe
Q psy17637 109 --------------YDLARDIDTHTHRIGRTGRA-GNKGVAYTLVT 139 (150)
Q Consensus 109 --------------~~~~~~~~~~~q~~GR~~R~-g~~~~~~~~~~ 139 (150)
++.|.+.++|+||+||+||. |..|.+++|+.
T Consensus 252 ~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 252 KPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp EEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred eeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 89999999999999999998 67899999974
No 44
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.87 E-value=3.4e-22 Score=159.05 Aligned_cols=111 Identities=22% Similarity=0.311 Sum_probs=95.9
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccC------------------------------------ceEEEecCCCCHHHHHH
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKE------------------------------------YDVLLLHGDMDQSERNS 75 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~------------------------------------~~~~~~~~~~~~~~r~~ 75 (150)
.+..++||||++++.++.++..|.... ..+.++||+|++++|..
T Consensus 250 ~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~ 329 (715)
T 2va8_A 250 SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDL 329 (715)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHH
Confidence 356899999999999999998886431 24889999999999999
Q ss_pred HHHHhhcCCceEEEEcCCCcccCCccCCcEEEE----ec-------CCCChhHHHHhhccccCCCC--ccEEEEEEecCC
Q psy17637 76 VITKFKRQECRILVATDVAARGLDIPHIRTVVN----YD-------LARDIDTHTHRIGRTGRAGN--KGVAYTLVTDKD 142 (150)
Q Consensus 76 ~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~----~~-------~~~~~~~~~q~~GR~~R~g~--~~~~~~~~~~~~ 142 (150)
+++.|++|..+|||||+.+++|+|+|++++||+ |+ .|.+..+|.||+||+||.|. .|.|+.++++.+
T Consensus 330 v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 330 IEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 999999999999999999999999999999998 88 89999999999999999983 688999987765
No 45
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.5e-22 Score=164.77 Aligned_cols=123 Identities=18% Similarity=0.260 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCce--------------------------------------
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYD-------------------------------------- 60 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-------------------------------------- 60 (150)
....++..+... ...++||||++++.++.++..|...++.
T Consensus 428 ~l~~li~~l~~~--~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 505 (1108)
T 3l9o_A 428 DIYKIVKMIWKK--KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRR 505 (1108)
T ss_dssp HHHHHHHHHHHT--TCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhc--CCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhc
Confidence 344566666554 5679999999999999999998754332
Q ss_pred -EEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCC--------CChhHHHHhhccccCCC--
Q psy17637 61 -VLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLA--------RDIDTHTHRIGRTGRAG-- 129 (150)
Q Consensus 61 -~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~--------~~~~~~~q~~GR~~R~g-- 129 (150)
+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+++.| .++.+|+||+||+||.|
T Consensus 506 gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d 585 (1108)
T 3l9o_A 506 GIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLD 585 (1108)
T ss_dssp TEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSC
T ss_pred CeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCC
Confidence 7899999999999999999999999999999999999999999999976653 37788999999999999
Q ss_pred CccEEEEEEecCCC
Q psy17637 130 NKGVAYTLVTDKDK 143 (150)
Q Consensus 130 ~~~~~~~~~~~~~~ 143 (150)
..|.+++++++...
T Consensus 586 ~~G~~ill~~~~~~ 599 (1108)
T 3l9o_A 586 DRGIVIMMIDEKME 599 (1108)
T ss_dssp SSEEEEEEECCCCC
T ss_pred CceEEEEEecCCcC
Confidence 57888888877644
No 46
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.87 E-value=3e-22 Score=152.06 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=94.6
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEec---
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYD--- 110 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~--- 110 (150)
..++||||++++.++.+++.|...++.+..+|+.+. .++++.|++|+.+|||||+++++|+|+|+ ++||+++
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~ 262 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCL 262 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcc
Confidence 568999999999999999999999999999999864 57899999999999999999999999999 9999998
Q ss_pred -----------------CCCChhHHHHhhccccCCCC-ccEEEEEEecC
Q psy17637 111 -----------------LARDIDTHTHRIGRTGRAGN-KGVAYTLVTDK 141 (150)
Q Consensus 111 -----------------~~~~~~~~~q~~GR~~R~g~-~~~~~~~~~~~ 141 (150)
.|.+..+|+||+||+||.|. .+.++++...+
T Consensus 263 ~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 263 KPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 99999999999999999997 77888776543
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.87 E-value=2.6e-22 Score=152.81 Aligned_cols=120 Identities=17% Similarity=0.253 Sum_probs=102.2
Q ss_pred HHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCC
Q psy17637 20 AGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLD 99 (150)
Q Consensus 20 ~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 99 (150)
...+.+.+.. ....++||||++.+.++.+++.|. +..+||+++..+|+++++.|++|+.+|||+|+++++|+|
T Consensus 337 ~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gld 409 (472)
T 2fwr_A 337 IRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGID 409 (472)
T ss_dssp HHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSC
T ss_pred HHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcc
Confidence 3445555544 467899999999999999999985 457899999999999999999999999999999999999
Q ss_pred ccCCcEEEEecCCCChhHHHHhhccccCCCCc---cEEEEEEecCCCccc
Q psy17637 100 IPHIRTVVNYDLARDIDTHTHRIGRTGRAGNK---GVAYTLVTDKDKDGE 146 (150)
Q Consensus 100 i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~---~~~~~~~~~~~~~~~ 146 (150)
+|++++||++++|+++..|.|++||+||.|+. ..+|.+++....++.
T Consensus 410 lp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~ 459 (472)
T 2fwr_A 410 VPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVN 459 (472)
T ss_dssp SCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---
T ss_pred cccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHH
Confidence 99999999999999999999999999999854 356777777655544
No 48
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.87 E-value=3.4e-22 Score=159.21 Aligned_cols=110 Identities=26% Similarity=0.370 Sum_probs=99.0
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccC---------------------------------ceEEEecCCCCHHHHHHHHHH
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKE---------------------------------YDVLLLHGDMDQSERNSVITK 79 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~---------------------------------~~~~~~~~~~~~~~r~~~~~~ 79 (150)
+..++||||++++.++.++..|.... ..+.++||+|++++|..+++.
T Consensus 236 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 315 (720)
T 2zj8_A 236 KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN 315 (720)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 46899999999999999998886431 138999999999999999999
Q ss_pred hhcCCceEEEEcCCCcccCCccCCcEEEE----ec----CCCChhHHHHhhccccCCC--CccEEEEEEecCC
Q psy17637 80 FKRQECRILVATDVAARGLDIPHIRTVVN----YD----LARDIDTHTHRIGRTGRAG--NKGVAYTLVTDKD 142 (150)
Q Consensus 80 f~~g~~~vlv~T~~~~~Gidi~~~~~vi~----~~----~~~~~~~~~q~~GR~~R~g--~~~~~~~~~~~~~ 142 (150)
|++|.++|||||+.+++|+|+|++++||+ |+ .|.+..+|.||+||+||.| ..|.++.++++.+
T Consensus 316 f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 316 FRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp HHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred HHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 99999999999999999999999999998 66 5899999999999999998 4688999988776
No 49
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.87 E-value=1.7e-21 Score=161.37 Aligned_cols=110 Identities=23% Similarity=0.305 Sum_probs=102.7
Q ss_pred CCCCCeeEEehhhhhHHHHHhhcccc--CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEe
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVK--EYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNY 109 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~ 109 (150)
..+.+++|||++++.++.+++.|... +..+..+||+|++.+|+++++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 810 ~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~ 889 (1151)
T 2eyq_A 810 LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 889 (1151)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEET
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEe
Confidence 45689999999999999999999876 7889999999999999999999999999999999999999999999999999
Q ss_pred cC-CCChhHHHHhhccccCCCCccEEEEEEecC
Q psy17637 110 DL-ARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141 (150)
Q Consensus 110 ~~-~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~ 141 (150)
+. +.++..|.|++||+||.|+.+.+++++...
T Consensus 890 ~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 890 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 88 569999999999999999999999988754
No 50
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.87 E-value=1.2e-21 Score=155.98 Aligned_cols=126 Identities=20% Similarity=0.229 Sum_probs=111.6
Q ss_pred hhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCc
Q psy17637 16 DKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAA 95 (150)
Q Consensus 16 ~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 95 (150)
...+...+++.+......+.|+||||+|++.++.|+..|...|+++..+||.+.+.++..+.+.|+.| .|+|||++++
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAg 519 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAG 519 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCS
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhh
Confidence 34456677787766545678999999999999999999999999999999998888887777888877 6999999999
Q ss_pred ccCCccCC----------------------------------------------------cEEEEecCCCChhHHHHhhc
Q psy17637 96 RGLDIPHI----------------------------------------------------RTVVNYDLARDIDTHTHRIG 123 (150)
Q Consensus 96 ~Gidi~~~----------------------------------------------------~~vi~~~~~~~~~~~~q~~G 123 (150)
+|+|++.. .+||+++.|.+...|.|++|
T Consensus 520 RGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~G 599 (922)
T 1nkt_A 520 RGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRG 599 (922)
T ss_dssp TTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHH
T ss_pred cCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhc
Confidence 99999864 49999999999999999999
Q ss_pred cccCCCCccEEEEEEecCCC
Q psy17637 124 RTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 124 R~~R~g~~~~~~~~~~~~~~ 143 (150)
|+||.|++|.+.+|++.+|.
T Consensus 600 RTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 600 RSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp TSSGGGCCEEEEEEEETTSH
T ss_pred ccccCCCCeeEEEEechhHH
Confidence 99999999999999998765
No 51
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.87 E-value=1.6e-21 Score=159.52 Aligned_cols=122 Identities=24% Similarity=0.351 Sum_probs=103.6
Q ss_pred chhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCc-----------------------------------
Q psy17637 15 KDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEY----------------------------------- 59 (150)
Q Consensus 15 ~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~----------------------------------- 59 (150)
........++..+... ...++||||++++.++.++..|...++
T Consensus 319 ~~~~~~~~li~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~ 396 (997)
T 4a4z_A 319 PSKKTWPEIVNYLRKR--ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRS 396 (997)
T ss_dssp CCTTHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHH
Confidence 3344456777777765 667999999999999999999976554
Q ss_pred ----eEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCCC---------ChhHHHHhhcccc
Q psy17637 60 ----DVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLAR---------DIDTHTHRIGRTG 126 (150)
Q Consensus 60 ----~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~---------~~~~~~q~~GR~~ 126 (150)
.+..+||+|++.+|..+++.|+.|.++|||||+++++|+|+|+ ..||+++.++ ++.+|.|++||+|
T Consensus 397 ~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAG 475 (997)
T 4a4z_A 397 LLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAG 475 (997)
T ss_dssp HHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGC
T ss_pred HhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccc
Confidence 4789999999999999999999999999999999999999999 5566655555 9999999999999
Q ss_pred CCC--CccEEEEEEe
Q psy17637 127 RAG--NKGVAYTLVT 139 (150)
Q Consensus 127 R~g--~~~~~~~~~~ 139 (150)
|.| ..|.+++++.
T Consensus 476 R~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 476 RRGLDSTGTVIVMAY 490 (997)
T ss_dssp CTTTCSSEEEEEECC
T ss_pred cCCCCcceEEEEecC
Confidence 998 4567777774
No 52
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.86 E-value=5.8e-23 Score=164.44 Aligned_cols=110 Identities=21% Similarity=0.331 Sum_probs=102.0
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc-----------cCceEEEecCCCCHHHHHHHHHHhh-----cCCceEEEEcCCCcc
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV-----------KEYDVLLLHGDMDQSERNSVITKFK-----RQECRILVATDVAAR 96 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~g~~~vlv~T~~~~~ 96 (150)
..+++||||++++.++.++..|.. .++.+.++||+|++++|.++++.|. .|..+|||||+++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 578999999999999999999874 5788999999999999999999999 999999999999999
Q ss_pred cCCccCCcEEEEecC------------------CCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 97 GLDIPHIRTVVNYDL------------------ARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 97 Gidi~~~~~vi~~~~------------------~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
|+|+|++++||+++. |.+..+|.||+||+||. .+|.|+.|+++.+.
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999877 88999999999999999 68999999976544
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.86 E-value=1.7e-22 Score=153.81 Aligned_cols=103 Identities=19% Similarity=0.235 Sum_probs=93.7
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEE-----
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN----- 108 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~----- 108 (150)
..++||||++++.++.+++.|...++.+..+|+. +|.++++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~ 264 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSV 264 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEEC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccc
Confidence 5689999999999999999999999999999995 6788999999999999999999999999999 99999
Q ss_pred ---------------ecCCCChhHHHHhhccccCCCC-ccEEEEEEecC
Q psy17637 109 ---------------YDLARDIDTHTHRIGRTGRAGN-KGVAYTLVTDK 141 (150)
Q Consensus 109 ---------------~~~~~~~~~~~q~~GR~~R~g~-~~~~~~~~~~~ 141 (150)
++.|.+..+|+||+||+||.|. +|.+++|++..
T Consensus 265 ~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 265 KPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 6799999999999999999997 89999999875
No 54
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.86 E-value=5.6e-22 Score=157.58 Aligned_cols=110 Identities=26% Similarity=0.407 Sum_probs=98.9
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc------------------------------CceEEEecCCCCHHHHHHHHHHhhc
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK------------------------------EYDVLLLHGDMDQSERNSVITKFKR 82 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~ 82 (150)
+..++||||++++.++.++..|... +..+.++||+|++++|..+++.|++
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 320 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 320 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC
Confidence 5689999999999999998887642 1247889999999999999999999
Q ss_pred CCceEEEEcCCCcccCCccCCcEEEE----ec---CCCChhHHHHhhccccCCC--CccEEEEEEecCC
Q psy17637 83 QECRILVATDVAARGLDIPHIRTVVN----YD---LARDIDTHTHRIGRTGRAG--NKGVAYTLVTDKD 142 (150)
Q Consensus 83 g~~~vlv~T~~~~~Gidi~~~~~vi~----~~---~~~~~~~~~q~~GR~~R~g--~~~~~~~~~~~~~ 142 (150)
|..+|||||+.+++|+|+|++++||+ || .|.+..+|.||+||+||.| ..|.++.++++.+
T Consensus 321 g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 321 GNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp TSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred CCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 99999999999999999999999998 65 7899999999999999998 4688999988765
No 55
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.86 E-value=1.5e-21 Score=149.61 Aligned_cols=127 Identities=16% Similarity=0.233 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcccc-CceEEEecCCCCHHHHHHHHHHhhcC-Cce-EEEEcCCCc
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK-EYDVLLLHGDMDQSERNSVITKFKRQ-ECR-ILVATDVAA 95 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vlv~T~~~~ 95 (150)
++..+.+.+......+.++||||.+.+.++.+...|... +..+..+||++++++|.++++.|+++ ... +|++|++++
T Consensus 326 K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~ 405 (500)
T 1z63_A 326 KMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGG 405 (500)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-
T ss_pred hHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccccc
Confidence 344555555554456789999999999999999999875 88999999999999999999999998 454 789999999
Q ss_pred ccCCccCCcEEEEecCCCChhHHHHhhccccCCCCccE--EEEEEecCCCcc
Q psy17637 96 RGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGV--AYTLVTDKDKDG 145 (150)
Q Consensus 96 ~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~--~~~~~~~~~~~~ 145 (150)
+|+|++.+++||++++|+++..|.|++||++|.|+.+. ++.++.....++
T Consensus 406 ~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee 457 (500)
T 1z63_A 406 FGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 457 (500)
T ss_dssp CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHH
T ss_pred CCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHH
Confidence 99999999999999999999999999999999997654 566777665443
No 56
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.86 E-value=1.2e-21 Score=154.77 Aligned_cols=102 Identities=20% Similarity=0.241 Sum_probs=95.3
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEE----
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN---- 108 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~---- 108 (150)
...++||||++++.++.+++.|...++.+..+||. +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~ 483 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKS 483 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCc
Confidence 46799999999999999999999999999999994 789999999999999999999999999999 999998
Q ss_pred ----------------ecCCCChhHHHHhhccccCC-CCccEEEEEEe
Q psy17637 109 ----------------YDLARDIDTHTHRIGRTGRA-GNKGVAYTLVT 139 (150)
Q Consensus 109 ----------------~~~~~~~~~~~q~~GR~~R~-g~~~~~~~~~~ 139 (150)
++.|.+.++|+||+||+||. |+.|.+++|+.
T Consensus 484 ~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 484 VKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp CCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred ccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 56899999999999999999 68889999974
No 57
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.85 E-value=1.7e-21 Score=152.80 Aligned_cols=101 Identities=18% Similarity=0.211 Sum_probs=93.9
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEE-------
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV------- 106 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~v------- 106 (150)
..++||||++++.++.+++.|...++++..+||. +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~ 429 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCL 429 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECccee
Confidence 5689999999999999999999999999999985 678899999999999999999999999997 8887
Q ss_pred -------------EEecCCCChhHHHHhhccccCCCC-ccEEEEEEe
Q psy17637 107 -------------VNYDLARDIDTHTHRIGRTGRAGN-KGVAYTLVT 139 (150)
Q Consensus 107 -------------i~~~~~~~~~~~~q~~GR~~R~g~-~~~~~~~~~ 139 (150)
++++.|.+.++|+||+||+||.|. .|.+++|++
T Consensus 430 ~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 430 KPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred cceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 778889999999999999999975 789999987
No 58
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.85 E-value=1.5e-22 Score=161.80 Aligned_cols=119 Identities=24% Similarity=0.395 Sum_probs=103.5
Q ss_pred HHHHHHHhccCCCCCeeEEehhh--------hhHHHHHhhccc---cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEE
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQ--------LNAEELANSLTV---KEYDVLLLHGDMDQSERNSVITKFKRQECRILVA 90 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~--------~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 90 (150)
.+++.+......+.+++|||++. ..++.+++.|.. .+..+..+||+|++++|..+++.|++|+.+||||
T Consensus 566 ~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVa 645 (780)
T 1gm5_A 566 EVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVS 645 (780)
T ss_dssp HHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCC
T ss_pred HHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEE
Confidence 45566655545678999999865 457888888887 4788999999999999999999999999999999
Q ss_pred cCCCcccCCccCCcEEEEecCCC-ChhHHHHhhccccCCCCccEEEEEEec
Q psy17637 91 TDVAARGLDIPHIRTVVNYDLAR-DIDTHTHRIGRTGRAGNKGVAYTLVTD 140 (150)
Q Consensus 91 T~~~~~Gidi~~~~~vi~~~~~~-~~~~~~q~~GR~~R~g~~~~~~~~~~~ 140 (150)
|+++++|+|+|++++||++++|. +...|.|++||+||.|..|.|++++++
T Consensus 646 T~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 646 TTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp SSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred CCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 99999999999999999999996 789999999999999999999999873
No 59
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.85 E-value=1.5e-21 Score=149.96 Aligned_cols=105 Identities=18% Similarity=0.173 Sum_probs=94.4
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEc-CCCcccCCccCCcEEEEecC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT-DVAARGLDIPHIRTVVNYDL 111 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~Gidi~~~~~vi~~~~ 111 (150)
...++|||++ .++++.+++.|...+.++..+||+|++++|+++++.|++|+..||||| +++++|+|+|++++||++++
T Consensus 347 ~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~ 425 (510)
T 2oca_A 347 DENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHG 425 (510)
T ss_dssp TCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSC
T ss_pred CCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCC
Confidence 3456677777 788899999999887899999999999999999999999999999999 99999999999999999999
Q ss_pred CCChhHHHHhhccccCCCCccEEEEEE
Q psy17637 112 ARDIDTHTHRIGRTGRAGNKGVAYTLV 138 (150)
Q Consensus 112 ~~~~~~~~q~~GR~~R~g~~~~~~~~~ 138 (150)
|+++..|.|++||+||.|+.+..+.++
T Consensus 426 ~~s~~~~~Q~~GR~gR~g~~~~~v~i~ 452 (510)
T 2oca_A 426 VKSKIIVLQTIGRVLRKHGSKTIATVW 452 (510)
T ss_dssp CCSCCHHHHHHHHHHTTTCCCCCCEEE
T ss_pred CCCHHHHHHHHhcccccCCCCceEEEE
Confidence 999999999999999999766444443
No 60
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.85 E-value=1.2e-20 Score=148.72 Aligned_cols=123 Identities=13% Similarity=0.237 Sum_probs=106.9
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCc---eEEEEcCCCccc
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQEC---RILVATDVAARG 97 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~vlv~T~~~~~G 97 (150)
..++..+... ...++||||+....++.+...|...++.+..+||+++.++|.++++.|+++.. .+|++|.+++.|
T Consensus 405 ~~ll~~~~~~--~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~G 482 (644)
T 1z3i_X 405 DYILAMTRTT--TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCG 482 (644)
T ss_dssp HHHHHHHHHH--CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTT
T ss_pred HHHHHHHhhc--CCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCC
Confidence 3444444332 57899999999999999999999999999999999999999999999999875 488999999999
Q ss_pred CCccCCcEEEEecCCCChhHHHHhhccccCCCCcc--EEEEEEecCCCcc
Q psy17637 98 LDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG--VAYTLVTDKDKDG 145 (150)
Q Consensus 98 idi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~--~~~~~~~~~~~~~ 145 (150)
+|++.+++||++|+|+++..+.|++||++|.|+.. .+|.+++....++
T Consensus 483 lnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe 532 (644)
T 1z3i_X 483 LNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEE 532 (644)
T ss_dssp CCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHH
T ss_pred cccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHH
Confidence 99999999999999999999999999999999765 5666777765444
No 61
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.84 E-value=5.6e-21 Score=150.80 Aligned_cols=104 Identities=22% Similarity=0.407 Sum_probs=95.2
Q ss_pred CCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc--CCceEEEEcCCCcccCCccCCcEEEEecC-
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR--QECRILVATDVAARGLDIPHIRTVVNYDL- 111 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidi~~~~~vi~~~~- 111 (150)
...+|||++++.++.+++.|...++.+..+||+|++++|.++++.|+. |..+|||||+++++|+|+ ++++||+++.
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 456899999999999999999999999999999999999999999999 889999999999999999 9999999999
Q ss_pred -------------CCChhHHHHhhccccCCCCc---cEEEEEEe
Q psy17637 112 -------------ARDIDTHTHRIGRTGRAGNK---GVAYTLVT 139 (150)
Q Consensus 112 -------------~~~~~~~~q~~GR~~R~g~~---~~~~~~~~ 139 (150)
|.+.++|.||+||+||.|.. |.++.+..
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 77999999999999999954 56655543
No 62
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.84 E-value=4.5e-21 Score=144.90 Aligned_cols=101 Identities=18% Similarity=0.167 Sum_probs=89.4
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcE--------
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT-------- 105 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~-------- 105 (150)
..++||||++++.++.+++.|...+..+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +.+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~ 245 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTI 245 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccc
Confidence 5689999999999999999999889999999997 577899999999999999999999999999 544
Q ss_pred ---------EEEecCCCChhHHHHhhccccCCCCccEEEEEEe
Q psy17637 106 ---------VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVT 139 (150)
Q Consensus 106 ---------vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~ 139 (150)
||+++.|.+..+|+|++||+||.|..+.+++++.
T Consensus 246 ~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 246 KPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred cceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 6788999999999999999999986554444443
No 63
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2e-20 Score=150.57 Aligned_cols=127 Identities=21% Similarity=0.302 Sum_probs=110.1
Q ss_pred HHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCc---eEEEEcCCCcc
Q psy17637 20 AGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQEC---RILVATDVAAR 96 (150)
Q Consensus 20 ~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~vlv~T~~~~~ 96 (150)
+..|.+.+......+.++||||.....++.|...|...++.+..+||+++..+|..+++.|+++.. .+|++|.+++.
T Consensus 558 ~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~ 637 (800)
T 3mwy_W 558 MVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGL 637 (800)
T ss_dssp HHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTT
T ss_pred HHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccC
Confidence 344555555544567899999999999999999999999999999999999999999999998654 48999999999
Q ss_pred cCCccCCcEEEEecCCCChhHHHHhhccccCCCCcc--EEEEEEecCCCccc
Q psy17637 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKG--VAYTLVTDKDKDGE 146 (150)
Q Consensus 97 Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~--~~~~~~~~~~~~~~ 146 (150)
|+|++.+++||++++|+++..+.|++||++|.|+.. .+|.|++....++.
T Consensus 638 GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~ 689 (800)
T 3mwy_W 638 GINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEE 689 (800)
T ss_dssp TCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHH
T ss_pred CCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHH
Confidence 999999999999999999999999999999999765 56777777655443
No 64
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.83 E-value=2e-20 Score=146.06 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=87.5
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce--------EEEecCCCCHHHHHHHHHHhhcCCce---EEEEcCCCcccCCc
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD--------VLLLHGDMDQSERNSVITKFKRQECR---ILVATDVAARGLDI 100 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~--------~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~~Gidi 100 (150)
.+..++||||+++++++.++..|...+.. +..+||.++ ++|+++++.|++|+.. |||+|+++++|+|+
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 45689999999999999999999765432 678899875 3799999999998765 88999999999999
Q ss_pred cCCcEEEEecCCCChhHHHHhhccccCCCC
Q psy17637 101 PHIRTVVNYDLARDIDTHTHRIGRTGRAGN 130 (150)
Q Consensus 101 ~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~ 130 (150)
|++++||++++|+++..|.|++||++|.+.
T Consensus 516 p~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 516 PTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred hheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 999999999999999999999999999875
No 65
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.83 E-value=5.7e-21 Score=149.90 Aligned_cols=103 Identities=24% Similarity=0.365 Sum_probs=91.8
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEE-----
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV----- 107 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi----- 107 (150)
...++||||++++.++.+++.|...++.+..+||+|++++ |..+..+|||||+++++|+|+| +++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~ 466 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTC 466 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcc
Confidence 5679999999999999999999999999999999999864 4556669999999999999997 99988
Q ss_pred -----Eec-----------CCCChhHHHHhhccccCCCCccEEEEEEecCCCcc
Q psy17637 108 -----NYD-----------LARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDG 145 (150)
Q Consensus 108 -----~~~-----------~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~ 145 (150)
||| .|.+.++|+||+||+|| |..|. +.|+++.+...
T Consensus 467 ~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 467 VTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred cccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 566 89999999999999999 88888 88888776544
No 66
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.82 E-value=5.5e-20 Score=151.41 Aligned_cols=103 Identities=24% Similarity=0.291 Sum_probs=87.3
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEE----cCCCcccCCccCC-cEEEE
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVA----TDVAARGLDIPHI-RTVVN 108 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~----T~~~~~Gidi~~~-~~vi~ 108 (150)
..++||||++++.++.++..|... +++..+||++ ..+++.|++|+.+|||| |+++++|+|+|++ ++||+
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~ 348 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF 348 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEE
Confidence 568999999999999999999988 8999999998 37889999999999999 8999999999995 99999
Q ss_pred ecCC-----------------------------------------------------------------------CChhH
Q psy17637 109 YDLA-----------------------------------------------------------------------RDIDT 117 (150)
Q Consensus 109 ~~~~-----------------------------------------------------------------------~~~~~ 117 (150)
+++| .+..+
T Consensus 349 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 428 (1054)
T 1gku_B 349 VGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRT 428 (1054)
T ss_dssp ESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHH
T ss_pred eCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHH
Confidence 9999 78999
Q ss_pred HHHhhccccCCCCcc--EEEEEEecCC
Q psy17637 118 HTHRIGRTGRAGNKG--VAYTLVTDKD 142 (150)
Q Consensus 118 ~~q~~GR~~R~g~~~--~~~~~~~~~~ 142 (150)
|+||+||+||.|..| .+++++...+
T Consensus 429 yiQr~GRagR~g~~g~~~g~~~~~~~d 455 (1054)
T 1gku_B 429 YIQGSGRTSRLFAGGLTKGASFLLEDD 455 (1054)
T ss_dssp HHHHHHTTCCEETTEECCEEEEEECSC
T ss_pred HhhhhchhhhccCCCCceEEEEEEecC
Confidence 999999999977654 3666666554
No 67
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.78 E-value=4.9e-19 Score=146.12 Aligned_cols=96 Identities=22% Similarity=0.281 Sum_probs=78.7
Q ss_pred CeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEE-EecCCCCHHHHHHHHHHhhcCC
Q psy17637 6 GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVL-LLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
++...+....... .+...+... ..++||||++++.++.++..|...++.+. .+||. +.+ ++.|++|+
T Consensus 287 ~i~~~~~~~~k~~---~L~~ll~~~---~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~ 354 (1104)
T 4ddu_A 287 NITHVRISSRSKE---KLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGK 354 (1104)
T ss_dssp CEEEEEESCCCHH---HHHHHHHHH---CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTS
T ss_pred CceeEEEecCHHH---HHHHHHHhc---CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCC
Confidence 4444444443333 344444442 37999999999999999999999999998 99993 555 99999999
Q ss_pred ceEEEE----cCCCcccCCccC-CcEEEEecCCC
Q psy17637 85 CRILVA----TDVAARGLDIPH-IRTVVNYDLAR 113 (150)
Q Consensus 85 ~~vlv~----T~~~~~Gidi~~-~~~vi~~~~~~ 113 (150)
.+|||| |+++++|+|+|+ +++||+||+|.
T Consensus 355 ~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 355 INILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp CSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999 999999999999 99999999998
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.77 E-value=5.2e-19 Score=150.65 Aligned_cols=115 Identities=18% Similarity=0.274 Sum_probs=96.9
Q ss_pred CCCCCeeEEehhhhhHHHHHhhcccc-------------------------------------CceEEEecCCCCHHHHH
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVK-------------------------------------EYDVLLLHGDMDQSERN 74 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~~~~r~ 74 (150)
....++||||+|++.++.++..|... ...++++||+|++++|.
T Consensus 315 ~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~ 394 (1724)
T 4f92_B 315 AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRT 394 (1724)
T ss_dssp CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHH
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHH
Confidence 45679999999999998887766321 12378999999999999
Q ss_pred HHHHHhhcCCceEEEEcCCCcccCCccCCcEEEE----ecC------CCChhHHHHhhccccCCCC--ccEEEEEEecCC
Q psy17637 75 SVITKFKRQECRILVATDVAARGLDIPHIRTVVN----YDL------ARDIDTHTHRIGRTGRAGN--KGVAYTLVTDKD 142 (150)
Q Consensus 75 ~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~----~~~------~~~~~~~~q~~GR~~R~g~--~~~~~~~~~~~~ 142 (150)
.+.+.|++|.++|||||+.+++|+|+|..++||. |++ |-+..+|.||+|||||.|. .|.++++.+..+
T Consensus 395 ~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 395 LVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGE 474 (1724)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTT
T ss_pred HHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchh
Confidence 9999999999999999999999999999999884 544 4589999999999999884 578888888776
Q ss_pred Cccc
Q psy17637 143 KDGE 146 (150)
Q Consensus 143 ~~~~ 146 (150)
...+
T Consensus 475 ~~~~ 478 (1724)
T 4f92_B 475 LQYY 478 (1724)
T ss_dssp CCHH
T ss_pred HHHH
Confidence 5543
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.76 E-value=1.2e-18 Score=148.46 Aligned_cols=112 Identities=16% Similarity=0.213 Sum_probs=94.8
Q ss_pred CCCCCeeEEehhhhhHHHHHhhcccc----------------------------------CceEEEecCCCCHHHHHHHH
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVK----------------------------------EYDVLLLHGDMDQSERNSVI 77 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~----------------------------------~~~~~~~~~~~~~~~r~~~~ 77 (150)
.+..++||||+|++.++.++..|... ...+.++||+|++.+|..++
T Consensus 1153 ~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1153 SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHH
Confidence 56789999999999998877655210 12378999999999999999
Q ss_pred HHhhcCCceEEEEcCCCcccCCccCCcEEEE----e------cCCCChhHHHHhhccccCCCC--ccEEEEEEecCCC
Q psy17637 78 TKFKRQECRILVATDVAARGLDIPHIRTVVN----Y------DLARDIDTHTHRIGRTGRAGN--KGVAYTLVTDKDK 143 (150)
Q Consensus 78 ~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~----~------~~~~~~~~~~q~~GR~~R~g~--~~~~~~~~~~~~~ 143 (150)
+.|++|.++|||||+.+++|+|+|...+||. | ..|.+..+|.||+|||||.|. .|.+++++...+.
T Consensus 1233 ~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~ 1310 (1724)
T 4f92_B 1233 QLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKK 1310 (1724)
T ss_dssp HHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGH
T ss_pred HHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHH
Confidence 9999999999999999999999999888883 2 235689999999999999996 5788888876544
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.54 E-value=4.9e-14 Score=115.74 Aligned_cols=105 Identities=15% Similarity=0.181 Sum_probs=85.0
Q ss_pred CCCeeEEehhhhhHHHHHhhccccC------------ceE-EEecCC----------C----------CHH---------
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKE------------YDV-LLLHGD----------M----------DQS--------- 71 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~------------~~~-~~~~~~----------~----------~~~--------- 71 (150)
+.++||||+++++|..++..|...+ +++ ..+||+ + ++.
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 4579999999999999999987643 444 455542 2 221
Q ss_pred --------------------HHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhccccCCCCc
Q psy17637 72 --------------------ERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNK 131 (150)
Q Consensus 72 --------------------~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~ 131 (150)
.|..++++|++|+++|||+|+++.+|+|+|.+ +++++|.|.+...|+|++||++|.+..
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 47888999999999999999999999999999 678899999999999999999998753
Q ss_pred ----cEEEEEEe
Q psy17637 132 ----GVAYTLVT 139 (150)
Q Consensus 132 ----~~~~~~~~ 139 (150)
|.++.|+.
T Consensus 696 ~K~~G~IVdf~~ 707 (1038)
T 2w00_A 696 TKTFGNIVTFRD 707 (1038)
T ss_dssp TCCSEEEEESSC
T ss_pred CCCcEEEEEccc
Confidence 45555543
No 71
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.07 E-value=7.9e-10 Score=89.02 Aligned_cols=125 Identities=19% Similarity=0.245 Sum_probs=96.8
Q ss_pred hhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcc----------------------------------------
Q psy17637 16 DKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLT---------------------------------------- 55 (150)
Q Consensus 16 ~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~---------------------------------------- 55 (150)
...+...+++.+......+.|+||+|.|.+..|.|...|.
T Consensus 425 ~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (997)
T 2ipc_A 425 EKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQ 504 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhcccc
Confidence 4556678888998877789999999999999999999988
Q ss_pred ------------------------------------ccCceEEEecCCCCHHHHHHHHHHhhcCC-ceEEEEcCCCcccC
Q psy17637 56 ------------------------------------VKEYDVLLLHGDMDQSERNSVITKFKRQE-CRILVATDVAARGL 98 (150)
Q Consensus 56 ------------------------------------~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~vlv~T~~~~~Gi 98 (150)
..+++.-.+.+.-...+- +++.. .|. -.|.|||+++++|.
T Consensus 505 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~he~EA-eIIAq--AG~~GaVTIATNMAGRGT 581 (997)
T 2ipc_A 505 LKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHAREA-EIVAQ--AGRSKTVTIATNMAGRGT 581 (997)
T ss_dssp CSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSHHHHH-HHHHT--TTSTTCEEEECSSTTTTS
T ss_pred ccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccchHHHH-HHHHh--cCCCCeEEEEecccCCCc
Confidence 345555666665433332 22222 232 36899999999999
Q ss_pred CccCC-------------------c-------------------------------------------------------
Q psy17637 99 DIPHI-------------------R------------------------------------------------------- 104 (150)
Q Consensus 99 di~~~-------------------~------------------------------------------------------- 104 (150)
||.-- .
T Consensus 582 DIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGL 661 (997)
T 2ipc_A 582 DIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGL 661 (997)
T ss_dssp CCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CeecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCe
Confidence 98421 1
Q ss_pred EEEEecCCCChhHHHHhhccccCCCCccEEEEEEecCCC
Q psy17637 105 TVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143 (150)
Q Consensus 105 ~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~ 143 (150)
+||-...+.|...-.|..||+||.|++|..-+|++-+|.
T Consensus 662 hVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDd 700 (997)
T 2ipc_A 662 FIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDD 700 (997)
T ss_dssp CEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSH
T ss_pred EEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECChH
Confidence 788888999999999999999999999999999987764
No 72
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.94 E-value=3.7e-09 Score=81.91 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=66.1
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEE--EcCCCcccCCccC----CcEE
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILV--ATDVAARGLDIPH----IRTV 106 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv--~T~~~~~Gidi~~----~~~v 106 (150)
..+.++||++|...++.+++.|... ....+|.. ..+.++++.|+.+. .||+ +|..+++|+|+|+ +++|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~~---~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSGI---PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTTS---CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhccC---ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 4568999999999999999998752 24555553 46788999998864 5665 8899999999997 7899
Q ss_pred EEecCCCCh------------------------------hHHHHhhccccCCCCccEEEEEEec
Q psy17637 107 VNYDLARDI------------------------------DTHTHRIGRTGRAGNKGVAYTLVTD 140 (150)
Q Consensus 107 i~~~~~~~~------------------------------~~~~q~~GR~~R~g~~~~~~~~~~~ 140 (150)
|+.+.|... ..+.|.+||+.|..++..++++++.
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 999988521 1235899999997655555556543
No 73
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.60 E-value=4.7e-07 Score=65.65 Aligned_cols=119 Identities=10% Similarity=0.033 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccC
Q psy17637 19 FAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGL 98 (150)
Q Consensus 19 ~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 98 (150)
.+..|+..+.+ .+.+++||+...+..+-+-.+|...++....+.|.....+ .+. .++...+.+.|...+-|+
T Consensus 113 ~L~~LL~~l~~---~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsag~~gi 184 (328)
T 3hgt_A 113 VLRDLINLVQE---YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSEGINFT 184 (328)
T ss_dssp HHHHHHHHHTT---SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTT
T ss_pred HHHHHHHHHHh---CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEECCCCCCc
Confidence 44455555543 5779999999999999999999999999999999855432 221 234445555577777777
Q ss_pred C-----ccCCcEEEEecCCCChhHH-HHhhccccCCC--C--ccEEEEEEecCCCcc
Q psy17637 99 D-----IPHIRTVVNYDLARDIDTH-THRIGRTGRAG--N--KGVAYTLVTDKDKDG 145 (150)
Q Consensus 99 d-----i~~~~~vi~~~~~~~~~~~-~q~~GR~~R~g--~--~~~~~~~~~~~~~~~ 145 (150)
+ ....+.||.||+.+++..- +|++-|+.|.| + .-.+|.+++....+.
T Consensus 185 n~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 185 KYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp TSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 6 6788999999999999886 89999998874 2 336788887765443
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.57 E-value=5.8e-07 Score=70.76 Aligned_cols=104 Identities=15% Similarity=0.218 Sum_probs=73.1
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEc--CCCcccCCcc--CCcEEEE
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT--DVAARGLDIP--HIRTVVN 108 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T--~~~~~Gidi~--~~~~vi~ 108 (150)
..+.++||++|....+.+++.|.. +... ...+++..++..+++.|+ ++..||+++ ..+++|+|+| .+..||.
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI 522 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIIL 522 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEE
Confidence 456799999999999999999872 2222 555666678999999999 777899997 4999999997 4678998
Q ss_pred ecCCCCh-----------------------------hHHHHhhccccCCCCccEEEEEEec
Q psy17637 109 YDLARDI-----------------------------DTHTHRIGRTGRAGNKGVAYTLVTD 140 (150)
Q Consensus 109 ~~~~~~~-----------------------------~~~~q~~GR~~R~g~~~~~~~~~~~ 140 (150)
...|... ....|.+||+-|..++..++++++.
T Consensus 523 ~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 523 AGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred EcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 8877521 1125999999998766666666654
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.07 E-value=7.6e-05 Score=57.93 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=70.7
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEc--CCCcccCCcc-----CCcE
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT--DVAARGLDIP-----HIRT 105 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T--~~~~~Gidi~-----~~~~ 105 (150)
..+.++||++|.+.++.+++.+ +..+..=..+++. .+.++.|+...-.||+++ ..+++|+|+| .+..
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~~---~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSRI---SLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTTC---CSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred CCCCEEEEecCHHHHHHHHHhc---CCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 4568999999999999999843 3333332234553 556778854344799988 6999999999 4678
Q ss_pred EEEecCCCC--------------------hh----------HHHHhhccccCCCCccEEEEEEec
Q psy17637 106 VVNYDLARD--------------------ID----------THTHRIGRTGRAGNKGVAYTLVTD 140 (150)
Q Consensus 106 vi~~~~~~~--------------------~~----------~~~q~~GR~~R~g~~~~~~~~~~~ 140 (150)
||....|.. .- ...|.+||+-|..++..++++++.
T Consensus 466 viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 466 VVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp EEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 888776641 10 124899999998766666666654
No 76
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.07 E-value=0.0034 Score=50.81 Aligned_cols=76 Identities=12% Similarity=0.158 Sum_probs=61.0
Q ss_pred CCCCeeEEehhhhhHHHHHhhc----cccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCcccCCccCCcEEE
Q psy17637 33 EVPPALMNLAMQLNAEELANSL----TVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAARGLDIPHIRTVV 107 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L----~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidi~~~~~vi 107 (150)
.+.++++.++++.-+...++.+ ...++++..+||+++..++...++.+.+|...|+|+|. .+...+.+.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 4578999999988766655544 34478999999999999999999999999999999995 344456777887776
Q ss_pred E
Q psy17637 108 N 108 (150)
Q Consensus 108 ~ 108 (150)
.
T Consensus 496 I 496 (780)
T 1gm5_A 496 I 496 (780)
T ss_dssp E
T ss_pred e
Confidence 3
No 77
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.40 E-value=0.016 Score=42.93 Aligned_cols=77 Identities=12% Similarity=0.169 Sum_probs=61.0
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccc---cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCc---ccCCccCCc
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTV---KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAA---RGLDIPHIR 104 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~---~Gidi~~~~ 104 (150)
....++||.+++++-+..+++.+.. .++++..++|+.+..++......+..+...|+|+|. .+. .-++...+.
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 4677999999999988888887766 578999999999999988888999999899999995 221 123445677
Q ss_pred EEEE
Q psy17637 105 TVVN 108 (150)
Q Consensus 105 ~vi~ 108 (150)
+||.
T Consensus 142 ~iVi 145 (414)
T 3oiy_A 142 FVFV 145 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7663
No 78
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.77 E-value=0.062 Score=45.39 Aligned_cols=76 Identities=8% Similarity=0.149 Sum_probs=59.9
Q ss_pred CCCCCeeEEehhhhhHHHHHhhc----cccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCcccCCccCCcEE
Q psy17637 32 QEVPPALMNLAMQLNAEELANSL----TVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAARGLDIPHIRTV 106 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L----~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidi~~~~~v 106 (150)
..+.+++|.++|+.-+...++.+ ...++.+..+++..+..++...++.+..|...|+|+|. .+...+.+.++.+|
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 35679999999988766555554 34467899999999999999999999999999999995 44445667777766
Q ss_pred E
Q psy17637 107 V 107 (150)
Q Consensus 107 i 107 (150)
|
T Consensus 730 I 730 (1151)
T 2eyq_A 730 I 730 (1151)
T ss_dssp E
T ss_pred E
Confidence 5
No 79
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=95.63 E-value=0.05 Score=45.73 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=61.6
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccc---cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCcc---cCCccCCc
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTV---KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAAR---GLDIPHIR 104 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~---Gidi~~~~ 104 (150)
..+.++||.+++++-+..+++.+.. .++.+..+||+++..++...++.+..|...|+|+|. .+.. -++..++.
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 4677899999999999888888776 567899999999998888888999999899999994 2211 13456777
Q ss_pred EEEE
Q psy17637 105 TVVN 108 (150)
Q Consensus 105 ~vi~ 108 (150)
+||.
T Consensus 199 ~lVi 202 (1104)
T 4ddu_A 199 FVFV 202 (1104)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 80
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.22 E-value=0.22 Score=33.30 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=50.0
Q ss_pred CCCeeEEehhhhhHHHHHhhcccc-----CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CC-----cccCCccC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVK-----EYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VA-----ARGLDIPH 102 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~~ 102 (150)
..++||.+++++-++.+++.+... ++++..++|+.+...... .+..+...|+|+|. .+ ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 458999999998887776655432 688999999988765543 34456678999994 22 22355667
Q ss_pred CcEEEE
Q psy17637 103 IRTVVN 108 (150)
Q Consensus 103 ~~~vi~ 108 (150)
+.++|.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777663
No 81
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=94.18 E-value=0.1 Score=40.19 Aligned_cols=59 Identities=10% Similarity=0.108 Sum_probs=53.3
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.+.+||.++++.-++.....|...++.+..++++.+..++......+..|...++++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 35799999999999988888888899999999999999999999999999999999884
No 82
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=93.85 E-value=0.12 Score=40.50 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=52.0
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHh--hcCCceEEEEcC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF--KRQECRILVATD 92 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~vlv~T~ 92 (150)
.+.+||.+++++-++.....|...++.+..++|+++..++..++..+ ..+...|+++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 45899999999999988888888899999999999999998888888 467789999995
No 83
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.60 E-value=0.47 Score=32.60 Aligned_cols=82 Identities=13% Similarity=0.205 Sum_probs=53.3
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CC--
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VA-- 94 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-- 94 (150)
.++..+... ....++||.+++++-+..+++.+.. .++.+..++|+.+.......+ .+...|+|+|. .+
T Consensus 100 ~il~~l~~~-~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~ 174 (249)
T 3ber_A 100 PILNALLET-PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLID 174 (249)
T ss_dssp HHHHHHHHS-CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHH
T ss_pred HHHHHHhcC-CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHH
Confidence 344444443 3456799999999988777766543 377889999998765544332 24568999994 21
Q ss_pred ----cccCCccCCcEEEE
Q psy17637 95 ----ARGLDIPHIRTVVN 108 (150)
Q Consensus 95 ----~~Gidi~~~~~vi~ 108 (150)
..++++..+.++|.
T Consensus 175 ~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 175 HLENTKGFNLRALKYLVM 192 (249)
T ss_dssp HHHHSTTCCCTTCCEEEE
T ss_pred HHHcCCCcCccccCEEEE
Confidence 13456667777763
No 84
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=93.51 E-value=0.32 Score=29.39 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=31.5
Q ss_pred eeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy17637 37 ALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 37 ~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
.+||++..+-+.++...++..|..+..++++.+.+.|.+-++.|....
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqg 52 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQG 52 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcC
Confidence 356666666666666666666777777777766666666666665443
No 85
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=92.98 E-value=0.12 Score=30.88 Aligned_cols=47 Identities=9% Similarity=0.019 Sum_probs=36.8
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCC
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMD 69 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 69 (150)
.+.+.+... .+..++++||.+-..+...+..|...|+.+..+.||+.
T Consensus 44 ~l~~~~~~l-~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 44 ELREKWKIL-ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHHGGGS-CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHHhC-CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 344444444 56678999999988888999999999998899999853
No 86
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=92.85 E-value=0.36 Score=32.60 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=49.3
Q ss_pred CCCCCeeEEehhhhhHHHHHhhcccc-----CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CC-----cccCCc
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVK-----EYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VA-----ARGLDI 100 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi 100 (150)
....++||.+++++-+..+++.+... ++++..++|+.+..+....+ ....|+|+|. .+ ...+++
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~ 164 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNP 164 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCG
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccc
Confidence 34578999999998887777666532 67889999998876554432 2468999995 22 123456
Q ss_pred cCCcEEEE
Q psy17637 101 PHIRTVVN 108 (150)
Q Consensus 101 ~~~~~vi~ 108 (150)
..+.++|.
T Consensus 165 ~~~~~lVi 172 (230)
T 2oxc_A 165 GSIRLFIL 172 (230)
T ss_dssp GGCCEEEE
T ss_pred ccCCEEEe
Confidence 67777663
No 87
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=92.69 E-value=0.88 Score=30.91 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=50.1
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-C----Cc-ccCCccC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-V----AA-RGLDIPH 102 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~----~~-~Gidi~~ 102 (150)
...++||.+++++-+..+++.+.. .++.+..++|+.+.......+. . ...|+|+|. . +. ...++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCccc
Confidence 466799999999988877666543 3788999999988766654433 2 368999994 1 11 2345677
Q ss_pred CcEEEE
Q psy17637 103 IRTVVN 108 (150)
Q Consensus 103 ~~~vi~ 108 (150)
+.++|.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777763
No 88
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=92.26 E-value=0.56 Score=33.96 Aligned_cols=73 Identities=16% Similarity=0.220 Sum_probs=50.4
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc-----CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CC-----cccCCcc
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK-----EYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VA-----ARGLDIP 101 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~ 101 (150)
...++||.|+++.-++.+++.+... ++.+..++|+.+....... +..+...|+|+|. .+ ....+..
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCcccc
Confidence 4568999999998887766655432 7889999999887655443 4456678999994 22 2234556
Q ss_pred CCcEEEE
Q psy17637 102 HIRTVVN 108 (150)
Q Consensus 102 ~~~~vi~ 108 (150)
.+.+||.
T Consensus 152 ~~~~vVi 158 (391)
T 1xti_A 152 HIKHFIL 158 (391)
T ss_dssp TCSEEEE
T ss_pred ccCEEEE
Confidence 7776663
No 89
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=91.93 E-value=0.38 Score=32.68 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=42.2
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----CCcc-cCCccC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-----VAAR-GLDIPH 102 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidi~~ 102 (150)
...++||.+++++-+..+++.+.. .+..+..++|+.+... ....+..+...|+|+|. .+.. .++...
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 456899999999988877766643 3567788888765332 23345556678999993 2222 245566
Q ss_pred CcEEEE
Q psy17637 103 IRTVVN 108 (150)
Q Consensus 103 ~~~vi~ 108 (150)
+.+||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777663
No 90
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=91.61 E-value=0.79 Score=30.08 Aligned_cols=72 Identities=11% Similarity=0.150 Sum_probs=47.5
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc----c-CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CC----cc-cCCcc
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV----K-EYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VA----AR-GLDIP 101 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~----~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~----~~-Gidi~ 101 (150)
...++||.+++++-+..+++.+.. . +..+..++|+.+..+... .+ .+...|+|+|. .+ .. ..++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 456899999999887777666543 2 677889999987654432 22 24568999995 21 22 23456
Q ss_pred CCcEEEE
Q psy17637 102 HIRTVVN 108 (150)
Q Consensus 102 ~~~~vi~ 108 (150)
.+.++|.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777663
No 91
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=91.37 E-value=1.9 Score=27.87 Aligned_cols=78 Identities=17% Similarity=0.280 Sum_probs=53.6
Q ss_pred HHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCC
Q psy17637 20 AGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLD 99 (150)
Q Consensus 20 ~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 99 (150)
...+.+.+.........+.|.|.+...+..+.+.|...++.+..+.++-. .+ ...|.|.|-....|+.
T Consensus 47 ~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~v~v~t~~~~KGlE 114 (174)
T 3dmn_A 47 VDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APGVIVVPSFLAKGLE 114 (174)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSSEEEEEGGGCTTCC
T ss_pred HHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCCeEEEEccccCCcC
Confidence 44555555432123567889999999999999999888888777765421 12 2368899988889988
Q ss_pred ccCCcEEEEecCC
Q psy17637 100 IPHIRTVVNYDLA 112 (150)
Q Consensus 100 i~~~~~vi~~~~~ 112 (150)
+ +.||.+++.
T Consensus 115 f---~~V~~~~~~ 124 (174)
T 3dmn_A 115 F---DAVIVWNAN 124 (174)
T ss_dssp E---EEEEEETCB
T ss_pred C---CEEEEecCC
Confidence 7 456665543
No 92
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=91.19 E-value=0.42 Score=32.15 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=45.1
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc---cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CC-----cccCCccCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV---KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VA-----ARGLDIPHI 103 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~~~ 103 (150)
...++||.+++++-+..+++.+.. .++.+..++|+.+....... +.. ...|+|+|. .+ ....++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---ISK-GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HHS-CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hcC-CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 567899999999988877776654 47788889988765443322 232 368999994 11 224556777
Q ss_pred cEEEE
Q psy17637 104 RTVVN 108 (150)
Q Consensus 104 ~~vi~ 108 (150)
.++|.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 77763
No 93
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=90.75 E-value=0.97 Score=30.47 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=45.8
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CC----cc--cCCcc
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VA----AR--GLDIP 101 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~----~~--Gidi~ 101 (150)
...++||.+++++-+...++.+.. .++.+..++|+.+.......+ +...|+|+|. .+ .. ..+..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 467899999999888777666654 357888999987654433322 3568999994 22 11 24556
Q ss_pred CCcEEEE
Q psy17637 102 HIRTVVN 108 (150)
Q Consensus 102 ~~~~vi~ 108 (150)
.+.++|.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7777663
No 94
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=90.13 E-value=0.2 Score=30.69 Aligned_cols=46 Identities=9% Similarity=0.034 Sum_probs=35.1
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhh--HHHHHhhccccCceEEEecCCC
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLN--AEELANSLTVKEYDVLLLHGDM 68 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~--~~~l~~~L~~~~~~~~~~~~~~ 68 (150)
.+...+... .+..++++||.+-.. +...+..|...|+++..+.||+
T Consensus 60 ~l~~~~~~l-~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~ 107 (124)
T 3flh_A 60 DLATRIGEL-DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGAL 107 (124)
T ss_dssp HHHHHGGGS-CTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHH
T ss_pred HHHHHHhcC-CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcH
Confidence 344444444 456789999998776 7888889988899988888985
No 95
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=89.94 E-value=2.5 Score=29.15 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=48.7
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----CC--cccCCcc
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-----VA--ARGLDIP 101 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~--~~Gidi~ 101 (150)
...++||.+++++-++..++.+.. .+..+..++|+......... +..+ ..|+|+|. .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 467899999999888777666643 46778889998876554433 3334 68999993 11 1235667
Q ss_pred CCcEEEE
Q psy17637 102 HIRTVVN 108 (150)
Q Consensus 102 ~~~~vi~ 108 (150)
++.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777763
No 96
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=89.92 E-value=0.18 Score=30.95 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=34.4
Q ss_pred HHHHHHHhccCCC-CCeeEEe-hhhhhHHHHHhhccccCceEEEecCCCC
Q psy17637 22 HLVRNLEGANQEV-PPALMNL-AMQLNAEELANSLTVKEYDVLLLHGDMD 69 (150)
Q Consensus 22 ~ll~~l~~~~~~~-~~~ivf~-~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 69 (150)
.+...+... .+. .++|+|| .+-..+...+..|...|+.+..+.||+.
T Consensus 77 ~~~~~~~~~-~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 77 DIYLQAAEL-ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHHHHH-HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHHHHHHh-ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 344444443 244 7899999 5767777888889888988999999864
No 97
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=89.67 E-value=0.18 Score=29.53 Aligned_cols=37 Identities=8% Similarity=0.090 Sum_probs=31.9
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 68 (150)
.+..++++||.+-..+...+..|...|+.+..+.||+
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 4567899999998888899999998999888999985
No 98
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=89.45 E-value=0.17 Score=29.87 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=31.8
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 68 (150)
.+..++++||.+-..+...+..|...|+.+..+.||+
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 4567899999998888889999998899888999985
No 99
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=89.18 E-value=1.2 Score=32.88 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=47.0
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc-C---ceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCcc-----cCCccC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK-E---YDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAAR-----GLDIPH 102 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~-~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~-----Gidi~~ 102 (150)
...++||.|+++.-++..++.+... + ..+..+||+....++..... ...|+|+|. .+.. .+....
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5679999999988776666555443 3 38899999998876654432 247888884 2221 244556
Q ss_pred CcEEEE
Q psy17637 103 IRTVVN 108 (150)
Q Consensus 103 ~~~vi~ 108 (150)
.++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 666653
No 100
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=89.17 E-value=0.34 Score=28.72 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=31.1
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 68 (150)
.+..++++||.+-..+...+..|...|+. +..+.||+
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 45678999999888888899999988985 78888885
No 101
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=89.15 E-value=0.18 Score=30.00 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=31.6
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 68 (150)
.+..++++||.+-..+...+..|...|++...+.||+
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 4567899999988888888999999999988888885
No 102
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=89.10 E-value=0.24 Score=28.68 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=30.1
Q ss_pred CCeeEEehhhhhHHHHHhhccccCceEEEecCCCC
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMD 69 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 69 (150)
.++++||.+-..+...+..|...|+++..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988888888999888988778888864
No 103
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=88.47 E-value=0.51 Score=31.52 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=41.8
Q ss_pred CCCCCeeEEehhhhhHHHHHhhcc----ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CC-----cccCCcc
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLT----VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VA-----ARGLDIP 101 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~ 101 (150)
....++||.++++.-+..+++.+. ..++.+..++|+.+..+.... +. ...|+|+|. .+ ....+..
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~ 154 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTD 154 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchh
Confidence 345689999999988776666554 346788899998765443322 22 268999994 21 2234556
Q ss_pred CCcEEEE
Q psy17637 102 HIRTVVN 108 (150)
Q Consensus 102 ~~~~vi~ 108 (150)
.+.+||.
T Consensus 155 ~~~~iVi 161 (224)
T 1qde_A 155 KIKMFIL 161 (224)
T ss_dssp TCCEEEE
T ss_pred hCcEEEE
Confidence 6776663
No 104
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=88.23 E-value=0.9 Score=38.11 Aligned_cols=73 Identities=11% Similarity=0.231 Sum_probs=53.4
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc----cCc----eEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCcccCC-ccC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV----KEY----DVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAARGLD-IPH 102 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gid-i~~ 102 (150)
.+.++||.++|++-+..+++.+.. .++ .+..++|+.+...+.+..+.+.. ..|+|+|+ .+..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 567899999999988777666643 355 78999999999888777777776 78999995 2221111 446
Q ss_pred CcEEE
Q psy17637 103 IRTVV 107 (150)
Q Consensus 103 ~~~vi 107 (150)
+.+||
T Consensus 176 l~~lV 180 (1054)
T 1gku_B 176 FDFIF 180 (1054)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 66666
No 105
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=88.11 E-value=1.3 Score=28.96 Aligned_cols=72 Identities=22% Similarity=0.243 Sum_probs=47.9
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc--CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CC----c-ccCCccCCc
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK--EYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VA----A-RGLDIPHIR 104 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~----~-~Gidi~~~~ 104 (150)
...++||.+++++-+..+++.+... .+.+..++|+.+.......+. ....|+|+|. .+ . ..+++..+.
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4678999999999888887777644 467888898876544433322 2467999994 11 1 234556777
Q ss_pred EEEE
Q psy17637 105 TVVN 108 (150)
Q Consensus 105 ~vi~ 108 (150)
++|.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7663
No 106
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=88.10 E-value=0.43 Score=28.28 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=31.6
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
.+..++++||.+-..+...+..|...|++ +..+.|++.
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 46678999999987888889999888885 778889863
No 107
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=87.99 E-value=1.8 Score=31.23 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=46.7
Q ss_pred CCCCeeEEehhhhhHHHHHhhcc----ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CC-----cccCCccC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLT----VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VA-----ARGLDIPH 102 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~~ 102 (150)
...++||.++++.-++..++.+. ..++.+..++|+.+..+....+. ...|+|+|. .+ ........
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 56789999999988776666553 34678899999988766554443 357888883 21 11233455
Q ss_pred CcEEE
Q psy17637 103 IRTVV 107 (150)
Q Consensus 103 ~~~vi 107 (150)
+.+||
T Consensus 163 ~~~vI 167 (394)
T 1fuu_A 163 IKMFI 167 (394)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 66655
No 108
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=87.90 E-value=1.9 Score=32.14 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=53.3
Q ss_pred HHHHHHHhcc----CCCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-
Q psy17637 22 HLVRNLEGAN----QEVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD- 92 (150)
Q Consensus 22 ~ll~~l~~~~----~~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~- 92 (150)
.++..+.... ....++||.++|++-+..+++.+.. .++++..++|+.+.......+ . ....|+|+|.
T Consensus 113 pil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Ivv~Tp~ 188 (434)
T 2db3_A 113 PILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI---T-RGCHVVIATPG 188 (434)
T ss_dssp HHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH---T-TCCSEEEECHH
T ss_pred HHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh---h-cCCCEEEEChH
Confidence 3455554431 2356899999999988877666543 467788999998876554332 2 3468999994
Q ss_pred C----Ccc-cCCccCCcEEEE
Q psy17637 93 V----AAR-GLDIPHIRTVVN 108 (150)
Q Consensus 93 ~----~~~-Gidi~~~~~vi~ 108 (150)
. +.. .+++..+.++|.
T Consensus 189 ~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 189 RLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp HHHHHHHTTSCCCTTCCEEEE
T ss_pred HHHHHHHhCCcccccCCeEEE
Confidence 1 122 245667777663
No 109
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=87.87 E-value=1.1 Score=30.35 Aligned_cols=83 Identities=16% Similarity=0.200 Sum_probs=48.9
Q ss_pred HHHHHHhccCCCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CC---
Q psy17637 23 LVRNLEGANQEVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VA--- 94 (150)
Q Consensus 23 ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~--- 94 (150)
++..+......+.++||.+++++-+..+++.+.. .++.+..++|+..... .......+...|+|+|. .+
T Consensus 87 ~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~ 163 (245)
T 3dkp_A 87 ILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYL 163 (245)
T ss_dssp HHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHH
T ss_pred HHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHH
Confidence 3444433323566899999999988777766654 3666777776522111 11122245568999993 11
Q ss_pred ----cccCCccCCcEEEE
Q psy17637 95 ----ARGLDIPHIRTVVN 108 (150)
Q Consensus 95 ----~~Gidi~~~~~vi~ 108 (150)
...+++.++.++|.
T Consensus 164 l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 164 LKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp HHSSSCSCCCTTCCEEEE
T ss_pred HHhCCCCcccccCcEEEE
Confidence 11466777887764
No 110
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=87.44 E-value=0.37 Score=29.70 Aligned_cols=38 Identities=8% Similarity=0.034 Sum_probs=31.4
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
.+..++++||.+-..+...+..|...|++ +..+.|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 45678999999988888888888888885 788899863
No 111
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=87.36 E-value=3.1 Score=28.23 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=46.8
Q ss_pred CCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CC-----cccCCccCC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VA-----ARGLDIPHI 103 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~~~ 103 (150)
..++||.+++++-+..+++.+.. .++.+..++|+.+....... +. ....|+|+|. .+ ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---VQ-MGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---HS-SCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hC-CCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 46899999999888777666543 35778889998765544322 22 3468999994 22 123456677
Q ss_pred cEEEE
Q psy17637 104 RTVVN 108 (150)
Q Consensus 104 ~~vi~ 108 (150)
.++|.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77663
No 112
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=86.87 E-value=0.88 Score=34.52 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=45.7
Q ss_pred CCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCc----cc-C-CccC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAA----RG-L-DIPH 102 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~----~G-i-di~~ 102 (150)
..++||.++++.-+...+..+.. .++.+..++|+.+...+...+. +...|+|+|. .+. .+ + .+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 77899999998877766655544 3888999999986544322221 1357899984 221 11 2 4556
Q ss_pred CcEEEE
Q psy17637 103 IRTVVN 108 (150)
Q Consensus 103 ~~~vi~ 108 (150)
+.+||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 676664
No 113
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=86.31 E-value=1.9 Score=34.91 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=43.3
Q ss_pred CCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCc----cc-C-CccC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAA----RG-L-DIPH 102 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~----~G-i-di~~ 102 (150)
..++||.|+++.-+...+..+.. .++.+..+||+.+...+...+ . +...|+|+|. .+. .+ + .+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKV---I-EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHH---H-HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHh---h-CCCCEEEEchHHHHHHHHhcccccccc
Confidence 77899999998877766555544 388999999998655443222 1 2467999994 221 11 2 4556
Q ss_pred CcEEEE
Q psy17637 103 IRTVVN 108 (150)
Q Consensus 103 ~~~vi~ 108 (150)
+.+||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 677663
No 114
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=86.21 E-value=1.4 Score=33.48 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=43.1
Q ss_pred CCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCc----cc-C-CccC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAA----RG-L-DIPH 102 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~----~G-i-di~~ 102 (150)
..++||.++++.-+...+..+.. .++.+..++|+.+...+...+. . ...|+|+|. .+. .+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI---E-DSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH---H-HCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh---C-CCCEEEECHHHHHHHHHhCccccccc
Confidence 67899999998877766655544 3888999999986554432221 1 257899994 222 22 2 4556
Q ss_pred CcEEEE
Q psy17637 103 IRTVVN 108 (150)
Q Consensus 103 ~~~vi~ 108 (150)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 676663
No 115
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=86.15 E-value=0.56 Score=31.31 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=44.8
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc--------CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----CCcc-cC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK--------EYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-----VAAR-GL 98 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gi 98 (150)
...++||.+++++-+..+++.+... +..+..++|+.+..... +.+ .....|+|+|. .+.. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 4568999999999877776655432 57788889886543221 111 23467999994 1112 34
Q ss_pred CccCCcEEEE
Q psy17637 99 DIPHIRTVVN 108 (150)
Q Consensus 99 di~~~~~vi~ 108 (150)
++..+.++|.
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 5566776663
No 116
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=86.13 E-value=3.2 Score=30.07 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=46.8
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC-----Cc-ccCCccC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV-----AA-RGLDIPH 102 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~-~Gidi~~ 102 (150)
...++||.++++.-++..++.+.. .++.+..++|+......... ..+...|+|+|.- +. ...++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 456899999998887766665543 36788899998775443221 2345689999941 22 2345566
Q ss_pred CcEEEE
Q psy17637 103 IRTVVN 108 (150)
Q Consensus 103 ~~~vi~ 108 (150)
+.+||.
T Consensus 164 ~~~vIi 169 (400)
T 1s2m_A 164 CSLFIM 169 (400)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777663
No 117
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=85.00 E-value=0.88 Score=32.26 Aligned_cols=69 Identities=13% Similarity=0.071 Sum_probs=44.5
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc-----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC-C-----c-ccCCc
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV-----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV-A-----A-RGLDI 100 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~-----~-~Gidi 100 (150)
...++||.++|++-+..++..+.. .++.+..++|+...... ......|+|+|.- + . ..+++
T Consensus 161 ~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l 233 (300)
T 3fmo_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDP 233 (300)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCG
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCCh
Confidence 445799999999988876555543 25677777777542111 1334579999952 1 1 24667
Q ss_pred cCCcEEEE
Q psy17637 101 PHIRTVVN 108 (150)
Q Consensus 101 ~~~~~vi~ 108 (150)
..+.++|.
T Consensus 234 ~~l~~lVl 241 (300)
T 3fmo_B 234 KKIKVFVL 241 (300)
T ss_dssp GGCSEEEE
T ss_pred hhceEEEE
Confidence 78888774
No 118
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=84.53 E-value=6.4 Score=28.57 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=47.2
Q ss_pred CCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CC-----cccCCccCCc
Q psy17637 35 PPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VA-----ARGLDIPHIR 104 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~~~~ 104 (150)
.++||.+++++-+..+++.+.. .++.+..++|+.+..+.... +. ....|+|+|. .+ ...+++..+.
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD---LE-RGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH---HT-TCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH---hh-CCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 5799999999988877776643 46788999999876554332 22 3468999995 22 1124456667
Q ss_pred EEEE
Q psy17637 105 TVVN 108 (150)
Q Consensus 105 ~vi~ 108 (150)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6663
No 119
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=84.35 E-value=0.77 Score=27.32 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=31.4
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 69 (150)
.+..++++||.+-..+...+..|...|+....+.|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 46678999999988888889999888886677889864
No 120
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=84.08 E-value=0.45 Score=29.97 Aligned_cols=38 Identities=13% Similarity=0.050 Sum_probs=31.5
Q ss_pred CCCCCeeEEehhh--hhHHHHHhhccccCceEEEecCCCC
Q psy17637 32 QEVPPALMNLAMQ--LNAEELANSLTVKEYDVLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~--~~~~~l~~~L~~~~~~~~~~~~~~~ 69 (150)
.+..++|+||.+- ..+...+..|...|+++..+.||+.
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 3567899999987 5788888999999999899999853
No 121
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=83.94 E-value=0.77 Score=28.90 Aligned_cols=38 Identities=11% Similarity=0.002 Sum_probs=29.9
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
.+..++|+||.+-..+...+..|...|+. +..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 35678999999877788888889888984 888999874
No 122
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=83.66 E-value=0.9 Score=28.46 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=30.9
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 68 (150)
.+..++++||.+-..+...+..|...|+. +..+.||+
T Consensus 54 ~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 54 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 45678999999888888899999888885 77888885
No 123
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=83.23 E-value=1.2 Score=27.51 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=30.5
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
+..++++||.+-......+..|...|+. +..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 4678999999987788888888888884 788889974
No 124
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=83.14 E-value=5.5 Score=28.24 Aligned_cols=70 Identities=13% Similarity=0.165 Sum_probs=46.4
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCc-----ccCCccC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAA-----RGLDIPH 102 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~-----~Gidi~~ 102 (150)
...++||.++++.-++.+++.+.. .++.+..++|+.........+. ...|+|+|. .+. ..+++..
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCccccc
Confidence 567899999998877776666643 4677888999887655443332 357899984 221 1234556
Q ss_pred CcEEE
Q psy17637 103 IRTVV 107 (150)
Q Consensus 103 ~~~vi 107 (150)
+++||
T Consensus 148 ~~~iI 152 (367)
T 1hv8_A 148 VKYFI 152 (367)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 66666
No 125
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=83.13 E-value=0.58 Score=29.16 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=31.6
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCc-eEEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEY-DVLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~ 68 (150)
.+..++++||.+-..+...+..|...|+ .+..+.||+
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcH
Confidence 4667899999998888888999988898 488899995
No 126
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=82.31 E-value=0.73 Score=25.91 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=28.5
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
.+..++++||.+-..+...+..|...|++ +..+ |++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 35678999999988888889999888875 4455 7753
No 127
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=82.16 E-value=5.3 Score=32.79 Aligned_cols=54 Identities=11% Similarity=-0.034 Sum_probs=40.1
Q ss_pred CCCCeeEEehhhhhHHHHHhhcc----ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLT----VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.+.+++|.++|++-+...++.+. ..++++.+++|+++...+.... ...|+|+|+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 45689999999987765555443 3489999999999986554432 268999995
No 128
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=81.95 E-value=5.6 Score=28.84 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=47.3
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----CCcc-cCCccC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-----VAAR-GLDIPH 102 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidi~~ 102 (150)
...++||.++++.-+..+++.+.. .+..+..++|+...... ...+..+...|+|+|. .+.. .+....
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 567899999999887776666643 36677888888664333 3445556778999994 1111 234455
Q ss_pred CcEEE
Q psy17637 103 IRTVV 107 (150)
Q Consensus 103 ~~~vi 107 (150)
+.+||
T Consensus 184 ~~~vV 188 (414)
T 3eiq_A 184 IKMFV 188 (414)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 66665
No 129
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=81.73 E-value=0.52 Score=29.23 Aligned_cols=37 Identities=19% Similarity=0.096 Sum_probs=31.0
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 68 (150)
.+..++++||.+-..+...+..|...|+. +..+.|++
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 121 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGF 121 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCH
Confidence 35678999999988888888899888885 88899985
No 130
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=80.85 E-value=0.71 Score=28.63 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=30.7
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 68 (150)
.+..++++||.+-..+...+..|...|+. +..+.||+
T Consensus 89 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 126 (139)
T 3d1p_A 89 DSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSM 126 (139)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHH
T ss_pred CCCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcH
Confidence 35678999999988888888999888885 78888885
No 131
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=79.37 E-value=7.2 Score=22.73 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=49.2
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.+..+++|.++.+.-..++.+.+...|+++..+-.+-+..+-++.-+...+....+--.|+
T Consensus 49 knfekiliisndkqllkemlelisklgykvflllqdqdeneleefkrkiesqgyevrkvtd 109 (134)
T 2lci_A 49 KNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVTD 109 (134)
T ss_dssp CSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEECC
T ss_pred cCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecCC
Confidence 5788999999999999999998888899999888888877777777777766556554443
No 132
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=79.25 E-value=0.36 Score=38.14 Aligned_cols=71 Identities=17% Similarity=0.295 Sum_probs=43.1
Q ss_pred CCCeeEEehhhhhHHHH-Hhhcccc---CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCcc-----------c
Q psy17637 34 VPPALMNLAMQLNAEEL-ANSLTVK---EYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAAR-----------G 97 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l-~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~-----------G 97 (150)
..++||.++++.-+... ++.|... ++.+..++|+.+..++...+. +...|+|+|. .+.. .
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~ 131 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 131 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------C
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccc
Confidence 37899999998877766 6666543 278999999976544332222 4568999984 3321 2
Q ss_pred CCccCCcEEEE
Q psy17637 98 LDIPHIRTVVN 108 (150)
Q Consensus 98 idi~~~~~vi~ 108 (150)
+....+++||.
T Consensus 132 ~~~~~~~lvVi 142 (699)
T 4gl2_A 132 VQLSDFSLIII 142 (699)
T ss_dssp CCGGGCSEEEE
T ss_pred eecccCcEEEE
Confidence 45566777663
No 133
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=78.90 E-value=7 Score=28.38 Aligned_cols=71 Identities=15% Similarity=0.140 Sum_probs=47.1
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----CCcc-cCCccC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-----VAAR-GLDIPH 102 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidi~~ 102 (150)
...++||.+++++-+..+++.+.. .++.+..++|+.........+. . ...|+|+|. .+.. .++...
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD---Y-GQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh---c-CCCEEEcCHHHHHHHHHhCCccHhh
Confidence 567999999999888777765543 3577888899887665544332 2 347899984 2222 344556
Q ss_pred CcEEE
Q psy17637 103 IRTVV 107 (150)
Q Consensus 103 ~~~vi 107 (150)
+.+||
T Consensus 180 ~~~vV 184 (410)
T 2j0s_A 180 IKMLV 184 (410)
T ss_dssp CCEEE
T ss_pred eeEEE
Confidence 66666
No 134
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=78.81 E-value=8.3 Score=31.68 Aligned_cols=54 Identities=15% Similarity=0.054 Sum_probs=40.7
Q ss_pred CCCCeeEEehhhhhHHHHHhhcc----ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLT----VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.+..++|.|+|++-+...++.+. ..|+++.++.|+++..++.... ...|+++|+
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 46689999999987776655543 3489999999999987665432 257999994
No 135
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=78.04 E-value=5.3 Score=27.97 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=46.0
Q ss_pred CCCeeEEehhhhhHHHHHhhcc----ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CC----c-ccCCccCC
Q psy17637 34 VPPALMNLAMQLNAEELANSLT----VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VA----A-RGLDIPHI 103 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~----~-~Gidi~~~ 103 (150)
..++||.++++.-++..++.+. ..+..+..++|+.+....... +. ...|+|+|. .+ . ..++...+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 5689999999888877776665 346788899999877654332 22 267899994 21 1 12345566
Q ss_pred cEEE
Q psy17637 104 RTVV 107 (150)
Q Consensus 104 ~~vi 107 (150)
++||
T Consensus 131 ~~iV 134 (337)
T 2z0m_A 131 EIVI 134 (337)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 6655
No 136
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=77.09 E-value=11 Score=29.21 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=45.3
Q ss_pred CCCeeEEehhhhhHHHHHhhccc--------cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCc----c--cC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTV--------KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAA----R--GL 98 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~--------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~----~--Gi 98 (150)
..++||.+++++-+..+++.+.. ....+..++|+.+.... +..+..+...|+|+|. .+. . ..
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~ 171 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA---MNKMNKLRPNIVIATPGRLIDVLEKYSNK 171 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH---HHHHHHHCCSEEEECHHHHHHHHHHHHHH
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHH---HHHHhcCCCCEEEECHHHHHHHHHhcccc
Confidence 45899999999988877766654 23557777887665433 3444445678999994 221 1 23
Q ss_pred CccCCcEEE
Q psy17637 99 DIPHIRTVV 107 (150)
Q Consensus 99 di~~~~~vi 107 (150)
.+..+.+||
T Consensus 172 ~~~~~~~lV 180 (579)
T 3sqw_A 172 FFRFVDYKV 180 (579)
T ss_dssp HCTTCCEEE
T ss_pred ccccCCEEE
Confidence 445666655
No 137
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=75.44 E-value=6.4 Score=32.58 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=35.6
Q ss_pred CCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
..++||.++++.-+...+..+.. .++.+..+||+.+...+...+. +...|+|+|.
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp 354 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTP 354 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecH
Confidence 67899999998877766665544 3889999999986554322221 1257899984
No 138
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=74.57 E-value=15 Score=30.63 Aligned_cols=54 Identities=11% Similarity=-0.021 Sum_probs=40.5
Q ss_pred CCCCeeEEehhhhhHHHHHhhc----cccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 33 EVPPALMNLAMQLNAEELANSL----TVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L----~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.+.+++|.++|+.-+...++.+ ...++++..+.|+++..++.... ...|+++|+
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 4668999999988666554444 44589999999999987766553 268899984
No 139
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=74.49 E-value=14 Score=28.28 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=43.8
Q ss_pred HHHHHHHhccC---CCCCeeEEehhhhhHHHHHhhccc--------cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEE
Q psy17637 22 HLVRNLEGANQ---EVPPALMNLAMQLNAEELANSLTV--------KEYDVLLLHGDMDQSERNSVITKFKRQECRILVA 90 (150)
Q Consensus 22 ~ll~~l~~~~~---~~~~~ivf~~~~~~~~~l~~~L~~--------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 90 (150)
.++..+..... ...++||.+++++-+..+++.+.. ....+..++|+.+.... +..+..+...|+|+
T Consensus 131 pil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~Iiv~ 207 (563)
T 3i5x_A 131 PIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA---MNKMNKLRPNIVIA 207 (563)
T ss_dssp HHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH---HHHHHHHCCSEEEE
T ss_pred HHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHH---HHHHhcCCCCEEEE
Confidence 35555544311 134799999999988877776654 23457777888765433 34444456789999
Q ss_pred cC
Q psy17637 91 TD 92 (150)
Q Consensus 91 T~ 92 (150)
|.
T Consensus 208 Tp 209 (563)
T 3i5x_A 208 TP 209 (563)
T ss_dssp CH
T ss_pred Cc
Confidence 95
No 140
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=73.26 E-value=11 Score=31.32 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=40.3
Q ss_pred CCCCeeEEehhhhhHHHHHhhc----cccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 33 EVPPALMNLAMQLNAEELANSL----TVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L----~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.+.+++|.++|+.-+...++++ ...|+++.++.|+++..++.... ...|+++|+
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 4568999999988776555544 33589999999999987665443 257999994
No 141
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=72.99 E-value=5.9 Score=31.18 Aligned_cols=70 Identities=11% Similarity=0.135 Sum_probs=43.5
Q ss_pred CCeeEEehhhhhHHHHHhhcc----ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CC----ccc-C-CccCC
Q psy17637 35 PPALMNLAMQLNAEELANSLT----VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VA----ARG-L-DIPHI 103 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~----~~G-i-di~~~ 103 (150)
.++||.++++.-+....+.+. ..++.+..++|+.+...+...+ .. ...|+|+|. .+ ..+ + ++..+
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~-~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---VE-NNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---HH-TCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---cc-CCCEEEECHHHHHHHHhcCcccccccc
Confidence 689999999776665555443 3478899999987543322221 11 368999994 22 222 2 45566
Q ss_pred cEEEE
Q psy17637 104 RTVVN 108 (150)
Q Consensus 104 ~~vi~ 108 (150)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77663
No 142
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=72.44 E-value=1.8 Score=27.51 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=28.8
Q ss_pred CCCeeEEehhhh---------hHHHHHhhccccCceEEEecCCC
Q psy17637 34 VPPALMNLAMQL---------NAEELANSLTVKEYDVLLLHGDM 68 (150)
Q Consensus 34 ~~~~ivf~~~~~---------~~~~l~~~L~~~~~~~~~~~~~~ 68 (150)
..++|+||.+-. .+..++..|...|+.+..+.||+
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 578999998863 46778888888899999999985
No 143
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=70.41 E-value=5 Score=27.91 Aligned_cols=37 Identities=11% Similarity=0.037 Sum_probs=30.3
Q ss_pred CCCCCeeEEehhhhhHHHHHhhcc-ccCc-eEEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLT-VKEY-DVLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~-~~~~-~~~~~~~~~ 68 (150)
.+..++|+||.+-..+...+..|. ..|+ .+..+.|++
T Consensus 231 ~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 231 TKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 456789999999877888888888 7888 588888985
No 144
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=70.19 E-value=12 Score=22.81 Aligned_cols=41 Identities=7% Similarity=0.059 Sum_probs=34.8
Q ss_pred EehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHh
Q psy17637 40 NLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80 (150)
Q Consensus 40 f~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 80 (150)
||.+++.+..+...|...++.+-.+.=.++++.|..+.+..
T Consensus 12 ~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 12 STAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHS
T ss_pred CccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhc
Confidence 45667788999999999999888888888899999888887
No 145
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=70.03 E-value=6.8 Score=24.89 Aligned_cols=92 Identities=10% Similarity=0.098 Sum_probs=50.8
Q ss_pred CeeEEEeecchh-----hHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEec---CCCCHHHHHHHH
Q psy17637 6 GVAYTLVTDKDK-----EFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLH---GDMDQSERNSVI 77 (150)
Q Consensus 6 ~~~~~~~~~~~~-----~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~---~~~~~~~r~~~~ 77 (150)
.+.||....... .......+.+.+....+.+++|.|.+.+.++.|-+.|=...-....-| |+-+
T Consensus 6 ~v~FY~L~~~~~~~~l~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~-------- 77 (150)
T 3sxu_A 6 NATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP-------- 77 (150)
T ss_dssp EEEEEECSCCCCBTTBCHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSS--------
T ss_pred EEEEEEeCCCchhhhhhHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCC--------
Confidence 345555554421 122233334444444688999999999999999888843222222223 2211
Q ss_pred HHhhcCCceEEEEcCCCcccCCccCCcEEEEecCC
Q psy17637 78 TKFKRQECRILVATDVAARGLDIPHIRTVVNYDLA 112 (150)
Q Consensus 78 ~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~ 112 (150)
.....|+++++... ..+..+++||++..
T Consensus 78 ----~~~~PV~L~~~~~~---~~~~~~vLinL~~~ 105 (150)
T 3sxu_A 78 ----RGGAPVEIAWPQKR---SSSRRDILISLRTS 105 (150)
T ss_dssp ----TTCCSEEEECTTSC---CCSCCSEEEECCSS
T ss_pred ----CCCCCEEEeCCCCC---CCCcCCEEEECCCC
Confidence 12357888874321 11245678887754
No 146
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=69.76 E-value=3.3 Score=28.79 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=31.6
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
.+..++++||.+-..+...+..|...|++ +..+.|++.
T Consensus 228 ~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~ 266 (280)
T 1urh_A 228 SYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWS 266 (280)
T ss_dssp CSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCC
T ss_pred CCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHH
Confidence 45678999999887888888888888884 888999975
No 147
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=68.73 E-value=4.2 Score=28.48 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=32.3
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCc-eEEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEY-DVLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 69 (150)
.+..++++||.+-..+...+..|...|+ .+..+.||+.
T Consensus 179 ~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 179 KKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp GTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 4678899999998889999999998888 5888999863
No 148
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=67.73 E-value=19 Score=24.14 Aligned_cols=58 Identities=7% Similarity=0.112 Sum_probs=38.1
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCC--------CCHHHHHHHHHHhhcCCceEEEEcCCCc
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGD--------MDQSERNSVITKFKRQECRILVATDVAA 95 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 95 (150)
..+.++|.+.+-+.+..+++.+.. .+-++.+|.+ |+++.++ .+++.-.+|+-+|.+++
T Consensus 51 ~Ik~iVVASssG~TA~k~~e~~~~-~lVvVTh~~GF~~pg~~e~~~e~~~----~L~~~G~~V~t~tH~ls 116 (206)
T 1t57_A 51 GIRNFVVASVSGETALRLSEMVEG-NIVSVTHHAGFREKGQLELEDEARD----ALLERGVNVYAGSHALS 116 (206)
T ss_dssp TCCEEEEECSSSHHHHHHHTTCCS-EEEEECCCTTSSSTTCCSSCHHHHH----HHHHHTCEEECCSCTTT
T ss_pred CCCEEEEEeCCCHHHHHHHHHccC-CEEEEeCcCCCCCCCCCcCCHHHHH----HHHhCCCEEEEeecccc
Confidence 457888888888889999998732 3333344433 5655554 44555568888887663
No 149
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=67.22 E-value=8.5 Score=26.06 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=35.1
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
..+++++++++.-++...+.+...+.. +..++|+.. ....|+|+|
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T 178 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVST 178 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEe
Confidence 568999999998888888877766777 888888753 245788888
No 150
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=66.95 E-value=6.3 Score=29.76 Aligned_cols=67 Identities=7% Similarity=0.109 Sum_probs=44.1
Q ss_pred CCCeeEEehhhhhHHHHHhhcccc----CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCccc--CCccCCcEE
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVK----EYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAARG--LDIPHIRTV 106 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~G--idi~~~~~v 106 (150)
..++||.++++.-++..++.+... +..+..++|+.+..++ ..+...|+|+|. .+... ..+.++.+|
T Consensus 157 ~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~li 229 (510)
T 2oca_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGMM 229 (510)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEEE
T ss_pred CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCEE
Confidence 449999999988777777666542 3578889998765443 346678999993 33222 234455555
Q ss_pred E
Q psy17637 107 V 107 (150)
Q Consensus 107 i 107 (150)
|
T Consensus 230 I 230 (510)
T 2oca_A 230 M 230 (510)
T ss_dssp E
T ss_pred E
Confidence 5
No 151
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=66.81 E-value=7.6 Score=28.95 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=36.9
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
..++||.|+++.-+...++.+..-+.. +..++|+... ...|+|+|.
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~ 179 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEc
Confidence 568999999999888888888777888 9999998642 346788873
No 152
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=64.32 E-value=3 Score=28.11 Aligned_cols=37 Identities=11% Similarity=-0.150 Sum_probs=30.5
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 68 (150)
.+..++++||.+-..+...+..|...|..+..+.|++
T Consensus 182 ~~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~ 218 (230)
T 2eg4_A 182 QPGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSM 218 (230)
T ss_dssp CTTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHH
T ss_pred CCCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcH
Confidence 4567899999998888888888888886678888885
No 153
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=63.87 E-value=5.4 Score=27.68 Aligned_cols=37 Identities=16% Similarity=0.016 Sum_probs=28.6
Q ss_pred CCCCCeeEEehhhhh-HHHHHhhccccCc-eEEEecCCC
Q psy17637 32 QEVPPALMNLAMQLN-AEELANSLTVKEY-DVLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~-~~~l~~~L~~~~~-~~~~~~~~~ 68 (150)
.+..++||||.+-.. +..++..|...|+ .+..+.|++
T Consensus 84 ~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~ 122 (280)
T 1urh_A 84 NQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGL 122 (280)
T ss_dssp CTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH
Confidence 356789999988655 7788888888888 577888864
No 154
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=63.64 E-value=9.4 Score=26.35 Aligned_cols=37 Identities=8% Similarity=-0.059 Sum_probs=29.5
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccc-cCce-EEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTV-KEYD-VLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~-~~~~-~~~~~~~~ 68 (150)
.+..++|+||.+-..+...+..|.. .|+. +..+.|++
T Consensus 224 ~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 224 DNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchH
Confidence 4567899999997778788888874 7874 88888884
No 155
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=63.22 E-value=34 Score=23.57 Aligned_cols=68 Identities=7% Similarity=0.110 Sum_probs=46.7
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHH-HHHHHHhhc--CCceEEEEcC
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSER-NSVITKFKR--QECRILVATD 92 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r-~~~~~~f~~--g~~~vlv~T~ 92 (150)
.+...|.. .+.++++.-.+.+.++++++.+...+.++..+..+++..+. +..++...+ |.+++||..-
T Consensus 22 aiA~~la~---~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 22 AIAKKFAL---NDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp HHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 44445543 45677777777888999999998888888888888754443 333333322 7899999763
No 156
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=62.65 E-value=8.8 Score=26.61 Aligned_cols=37 Identities=11% Similarity=-0.060 Sum_probs=28.3
Q ss_pred CCCCCeeEEehhhh-hHHHHHhhccccCce-EEEecCCC
Q psy17637 32 QEVPPALMNLAMQL-NAEELANSLTVKEYD-VLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~-~~~~l~~~L~~~~~~-~~~~~~~~ 68 (150)
.+..++|+||.+-. .+..++..|...|+. +..+.|++
T Consensus 77 ~~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 115 (285)
T 1uar_A 77 SNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGR 115 (285)
T ss_dssp CTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 45678999998865 577788888888874 77788764
No 157
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=62.02 E-value=3.8 Score=26.76 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=32.7
Q ss_pred CCCCeeEEehhhhhHHH-HHhhcc---ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 33 EVPPALMNLAMQLNAEE-LANSLT---VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~-l~~~L~---~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
...++||.|+++.-++. +.+.+. ..++.+..++|+.....+...+. ....|+|+|.
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 36789999999887666 444333 23678888888754322211111 1357888884
No 158
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=61.51 E-value=18 Score=26.28 Aligned_cols=51 Identities=4% Similarity=0.111 Sum_probs=37.7
Q ss_pred CCeeEEehhhhhHHHHHhhccccCce-EEEecCCCCHHHHHHHHHHhhcCCc
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMDQSERNSVITKFKRQEC 85 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~ 85 (150)
.=++||++-....+.+.+.+...+++ +.+++.+++..+..++.+..+....
T Consensus 81 DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~ 132 (334)
T 3mwd_B 81 DVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGV 132 (334)
T ss_dssp CEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred cEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 34778888877778888888878886 5556999998777777666665444
No 159
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=61.20 E-value=2.3 Score=25.54 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=26.7
Q ss_pred CCeeEEehhhhhHHHHHhhcccc-------CceEEEecCCCC
Q psy17637 35 PPALMNLAMQLNAEELANSLTVK-------EYDVLLLHGDMD 69 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~ 69 (150)
.++++||.+-..+...+..|... ...+..+.|++.
T Consensus 73 ~~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 73 VPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 38999998877777777777766 346888889863
No 160
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=61.08 E-value=9.6 Score=27.17 Aligned_cols=37 Identities=16% Similarity=-0.042 Sum_probs=29.4
Q ss_pred CCCCCeeEEehhhh-hHHHHHhhccccCce-EEEecCCC
Q psy17637 32 QEVPPALMNLAMQL-NAEELANSLTVKEYD-VLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~-~~~~l~~~L~~~~~~-~~~~~~~~ 68 (150)
.+..++||||.+-. .+..++..|...|+. +..+.|++
T Consensus 109 ~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 109 ARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp CTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 45678999998765 677888888888884 88888874
No 161
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=60.86 E-value=19 Score=25.60 Aligned_cols=68 Identities=15% Similarity=0.134 Sum_probs=42.3
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC-C-----cccCCccC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV-A-----ARGLDIPH 102 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~-----~~Gidi~~ 102 (150)
...++||.++++.-+...++.+.. .++.+..++++.... .......|+|+|.- + ....++..
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 145 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK--------NKQINAQVIVGTPGTVLDLMRRKLMQLQK 145 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT--------TSCBCCSEEEECHHHHHHHHHTTCBCCTT
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh--------hccCCCCEEEEcHHHHHHHHHcCCccccc
Confidence 567899999999888777766654 355666677653211 11234578999842 1 22345666
Q ss_pred CcEEEE
Q psy17637 103 IRTVVN 108 (150)
Q Consensus 103 ~~~vi~ 108 (150)
+++||.
T Consensus 146 ~~~iIi 151 (395)
T 3pey_A 146 IKIFVL 151 (395)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 776663
No 162
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=60.23 E-value=12 Score=23.52 Aligned_cols=38 Identities=13% Similarity=0.256 Sum_probs=23.7
Q ss_pred CCCCCeeEEeh-hhhh----HHHHH----hhccccCc-eEEEecCCCC
Q psy17637 32 QEVPPALMNLA-MQLN----AEELA----NSLTVKEY-DVLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~-~~~~----~~~l~----~~L~~~~~-~~~~~~~~~~ 69 (150)
.+..++|+||. +-.. +..|. ..|...|+ .+..+.|++.
T Consensus 83 ~~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~ 130 (152)
T 1t3k_A 83 KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFN 130 (152)
T ss_dssp CSCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTH
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHH
Confidence 35668999998 4332 33332 23355677 6888999974
No 163
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=58.20 E-value=39 Score=22.58 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=39.2
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCC--------CCHHHHHHHHHHhhcCCceEEEEcCCCc
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGD--------MDQSERNSVITKFKRQECRILVATDVAA 95 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 95 (150)
..+.++|.+.+-+.+..+++.+....+-++.+|.+ |+++.+ +.+++...+|+-+|.+++
T Consensus 43 ~Ik~iVVAS~sG~TA~k~~e~~~~i~lVvVTh~~GF~~pg~~e~~~e~~----~~L~~~G~~V~t~tH~ls 109 (201)
T 1vp8_A 43 GIKHLVVASSYGDTAMKALEMAEGLEVVVVTYHTGFVREGENTMPPEVE----EELRKRGAKIVRQSHILS 109 (201)
T ss_dssp TCCEEEEECSSSHHHHHHHHHCTTCEEEEEECCTTSSSTTCCSSCHHHH----HHHHHTTCEEEECCCTTT
T ss_pred CCCEEEEEeCCChHHHHHHHHhcCCeEEEEeCcCCCCCCCCCcCCHHHH----HHHHhCCCEEEEEecccc
Confidence 45788889988888999998873222333444443 455444 455666678988887764
No 164
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=57.86 E-value=25 Score=29.83 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=38.1
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
..+.++||-++++.-+...+..+......+..++|+.+ .++...|+|+|
T Consensus 225 ~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~T 273 (1108)
T 3l9o_A 225 KNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMT 273 (1108)
T ss_dssp HTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEE
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeC
Confidence 35678999999999988888888766557888999875 23456788888
No 165
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=57.65 E-value=34 Score=21.77 Aligned_cols=78 Identities=12% Similarity=0.008 Sum_probs=44.0
Q ss_pred CeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccc-cCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy17637 6 GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV-KEYDVLLLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
+..+....++++..+..+...+.+. ..+- -|+=+.+. + ..|.+ .|+.+..+.... ...+.++.+...+|+
T Consensus 12 g~V~lsv~D~dK~~~v~~ak~~~~l-l~Gf-~l~AT~gT--a----~~L~e~~Gl~v~~v~k~~-eGG~p~I~d~I~~ge 82 (152)
T 1b93_A 12 KHIALVAHDHCKQMLMSWVERHQPL-LEQH-VLYATGTT--G----NLISRATGMNVNAMLSGP-MGGDQQVGALISEGK 82 (152)
T ss_dssp CEEEEEECGGGHHHHHHHHHHTHHH-HTTS-EEEEETTH--H----HHHHHHHCCCCEEECCGG-GTHHHHHHHHHHTTC
T ss_pred CEEEEEEehhhHHHHHHHHHHHHHH-hCCC-EEEEccHH--H----HHHHHHhCceeEEEEecC-CCCCchHHHHHHCCC
Confidence 4455556666666444555544443 1122 33333332 2 33333 577776665431 114678999999999
Q ss_pred ceEEEEcC
Q psy17637 85 CRILVATD 92 (150)
Q Consensus 85 ~~vlv~T~ 92 (150)
+..+|-|.
T Consensus 83 IdlVInt~ 90 (152)
T 1b93_A 83 IDVLIFFW 90 (152)
T ss_dssp CCEEEEEC
T ss_pred ccEEEEcC
Confidence 98888874
No 166
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=57.62 E-value=16 Score=24.49 Aligned_cols=33 Identities=15% Similarity=-0.131 Sum_probs=27.4
Q ss_pred CCCeeEEehhhh-hHHHHHhhccccCce-EEEecCC
Q psy17637 34 VPPALMNLAMQL-NAEELANSLTVKEYD-VLLLHGD 67 (150)
Q Consensus 34 ~~~~ivf~~~~~-~~~~l~~~L~~~~~~-~~~~~~~ 67 (150)
..++++||.+-. .+..++..|. .|+. +..+.|+
T Consensus 61 ~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 61 RSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp CSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred CCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 678999998866 7788888888 8885 7888888
No 167
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=57.50 E-value=11 Score=27.29 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=41.8
Q ss_pred CCCCeeEEehhhhhHHHHHhhccc-----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CC-----c-ccCCc
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTV-----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VA-----A-RGLDI 100 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~-~Gidi 100 (150)
...++||.++++.-+..+++.+.. .+..+....++.... ........|+|+|. .+ . ..+++
T Consensus 94 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ivv~T~~~l~~~~~~~~~~~~ 166 (412)
T 3fht_A 94 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQIVIGTPGTVLDWCSKLKFIDP 166 (412)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCC-------TTCCCCCSEEEECHHHHHHHHTTSCSSCG
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchh-------hhhcCCCCEEEECchHHHHHHHhcCCcCh
Confidence 455899999999988877665543 256667777664321 11233457999994 22 1 23455
Q ss_pred cCCcEEE
Q psy17637 101 PHIRTVV 107 (150)
Q Consensus 101 ~~~~~vi 107 (150)
..+.+||
T Consensus 167 ~~~~~iV 173 (412)
T 3fht_A 167 KKIKVFV 173 (412)
T ss_dssp GGCCEEE
T ss_pred hhCcEEE
Confidence 6677766
No 168
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=56.55 E-value=9.2 Score=26.79 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=30.5
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
.+..++|+||.+-..+...+..|...|+. +..+.|++.
T Consensus 238 ~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 238 DLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp CTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 45678999999977777788888888885 788888853
No 169
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=56.49 E-value=3.8 Score=28.27 Aligned_cols=37 Identities=8% Similarity=-0.096 Sum_probs=30.4
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 68 (150)
.+..++++||.+-..+...+..|...|++ +..+.|++
T Consensus 221 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 258 (271)
T 1e0c_A 221 TPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSW 258 (271)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcH
Confidence 45678999999977788888888888884 78888885
No 170
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=56.23 E-value=8.7 Score=26.43 Aligned_cols=37 Identities=14% Similarity=-0.042 Sum_probs=28.4
Q ss_pred CCCCCeeEEehhhh-hHHHHHhhccccCce-EEEecCCC
Q psy17637 32 QEVPPALMNLAMQL-NAEELANSLTVKEYD-VLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~-~~~~l~~~L~~~~~~-~~~~~~~~ 68 (150)
.+..++||||.+-. .+..++..|...|+. +..+.||+
T Consensus 79 ~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~ 117 (271)
T 1e0c_A 79 RPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGL 117 (271)
T ss_dssp CTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 35678999998755 677888888888884 77888874
No 171
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=56.05 E-value=6.4 Score=28.08 Aligned_cols=37 Identities=11% Similarity=-0.065 Sum_probs=30.2
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccc-cCce-EEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTV-KEYD-VLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~-~~~~-~~~~~~~~ 68 (150)
.+..++|+||.+-..+...+..|.. .|++ +..+.|++
T Consensus 257 ~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~ 295 (318)
T 3hzu_A 257 NPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSW 295 (318)
T ss_dssp CTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHH
T ss_pred CCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcH
Confidence 5678999999998888888888875 7875 88888884
No 172
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=55.69 E-value=4.6 Score=28.60 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=29.2
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCc-eEEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEY-DVLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 69 (150)
.+..++++||.+-..+...+..|...|+ .+..+.|++.
T Consensus 252 ~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~ 290 (302)
T 3olh_A 252 DLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWV 290 (302)
T ss_dssp CTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHH
T ss_pred CCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 4567899999987666777777888887 5778888753
No 173
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=54.95 E-value=5.3 Score=30.93 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=32.4
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 69 (150)
.+..++++||.+-..+...+..|...|+++..+.|++.
T Consensus 539 ~~~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~~ 576 (588)
T 3ics_A 539 PVDKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFK 576 (588)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchHH
Confidence 45678999999988888999999999999888889863
No 174
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=54.66 E-value=9.3 Score=29.17 Aligned_cols=65 Identities=9% Similarity=0.012 Sum_probs=47.9
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCccCCcEEEEec
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYD 110 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~vi~~~ 110 (150)
+.++++.|.+....+.|.+.|...++.+...... ..+..| .+.++...+..|..+|...+++...
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~----------~~~~~g--~v~i~~g~L~~GF~~p~~klaVITE 446 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRL----------DEASDR--GRYLMIGAAEHGFVDTVRNLALICE 446 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG----------GGCCTT--CEEEEESCCCSCEEETTTTEEEEEH
T ss_pred CCeEEEEeCChHHHHHHHHHHHHcCCCceecCch----------hhcCCC--cEEEEEcccccCcccCCCCEEEEEc
Confidence 4689999999999999999999888765544321 112333 4666777899999999888877643
No 175
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=53.29 E-value=45 Score=21.86 Aligned_cols=80 Identities=13% Similarity=-0.030 Sum_probs=44.6
Q ss_pred cCeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccc-cCceEEEecCCCCHHHHHHHHHHhhcC
Q psy17637 5 KGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV-KEYDVLLLHGDMDQSERNSVITKFKRQ 83 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g 83 (150)
.+..+....++++..+..+...+... ..+ --|+=+.+ .+ ..|.+ .|+.+-.+.... ..-+.++.+...+|
T Consensus 27 ~g~V~lsv~D~dK~~lv~~ak~~~~l-L~G-f~L~AT~g--Ta----~~L~e~~Gl~v~~v~k~~-eGG~pqI~d~I~~g 97 (178)
T 1vmd_A 27 KKRIALIAHDRRKRDLLEWVSFNLGT-LSK-HELYATGT--TG----ALLQEKLGLKVHRLKSGP-LGGDQQIGAMIAEG 97 (178)
T ss_dssp SCEEEEEECGGGHHHHHHHHHHSHHH-HTT-SEEEECHH--HH----HHHHHHHCCCCEECSCGG-GTHHHHHHHHHHTT
T ss_pred CCEEEEEEehhhHHHHHHHHHHHHHH-hcC-CEEEEchH--HH----HHHHHHhCceeEEEeecC-CCCCchHHHHHHCC
Confidence 34455556666666444444444443 112 23333333 22 33433 577776665431 11467899999999
Q ss_pred CceEEEEcCC
Q psy17637 84 ECRILVATDV 93 (150)
Q Consensus 84 ~~~vlv~T~~ 93 (150)
++..+|.|..
T Consensus 98 eIdlVInt~d 107 (178)
T 1vmd_A 98 KIDVLIFFWD 107 (178)
T ss_dssp SCCEEEEECC
T ss_pred CccEEEEccC
Confidence 9998888853
No 176
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=52.84 E-value=32 Score=20.00 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=40.7
Q ss_pred EEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHH
Q psy17637 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITK 79 (150)
Q Consensus 9 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 79 (150)
....-.+++++.+..+..+... -..--+|||-......+++......+|..+..+++ +.+-.+.+++
T Consensus 53 ivvvvvddkewaekairfvksl-gaqvliiiydqdqnrleefsrevrrrgfevrtvts---pddfkksler 119 (134)
T 2l69_A 53 IVVVVVDDKEWAEKAIRFVKSL-GAQVLIIIYDQDQNRLEEFSREVRRRGFEVRTVTS---PDDFKKSLER 119 (134)
T ss_dssp EEEEECSSHHHHHHHHHHHHHH-CCCCEEEEECSCHHHHHHHHHHHHHTTCCEEEESS---HHHHHHHHHH
T ss_pred EEEEEEccHHHHHHHHHHHHhc-CCeEEEEEEeCchhHHHHHHHHHHhcCceEEEecC---hHHHHHHHHH
Confidence 3444555666666666666655 22233556666677788888887778877776665 4444444443
No 177
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=52.62 E-value=11 Score=27.99 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=30.1
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCc-eEEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEY-DVLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~ 68 (150)
.+..++|+||.+-..+..++..|...|+ .+..+.|++
T Consensus 201 ~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~ 238 (423)
T 2wlr_A 201 RHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGW 238 (423)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTH
T ss_pred CCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCH
Confidence 3567899999987778888888888888 578888885
No 178
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=52.06 E-value=50 Score=23.32 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=42.1
Q ss_pred CCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCc
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDI 100 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 100 (150)
..++|-+.+.+.+......+.+.+.+++.-+.++++++..++.+.-+ +..++++.+ ++.|+++
T Consensus 89 aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~L~~aa~--~~~~~~a~N-~SiGv~l 151 (288)
T 3ijp_A 89 TEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFSKTEEAQIADFAK--YTTIVKSGN-MSLGVNL 151 (288)
T ss_dssp CSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHHT--TSEEEECSC-CCHHHHH
T ss_pred CCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhC--cCCEEEECC-CcHHHHH
Confidence 46788666777777777777788888888777888877655544433 366766554 4445543
No 179
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=51.29 E-value=35 Score=20.02 Aligned_cols=46 Identities=9% Similarity=0.079 Sum_probs=29.7
Q ss_pred CCCCeeEEeh------hhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHH
Q psy17637 33 EVPPALMNLA------MQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVIT 78 (150)
Q Consensus 33 ~~~~~ivf~~------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 78 (150)
...+++||.. +=..|..+...|...++....+.=..+++.+..+.+
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 3468999985 223577888888888877665544445555554443
No 180
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=51.20 E-value=34 Score=19.88 Aligned_cols=46 Identities=4% Similarity=-0.150 Sum_probs=29.7
Q ss_pred CCCeeEEehh------hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHH
Q psy17637 34 VPPALMNLAM------QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITK 79 (150)
Q Consensus 34 ~~~~ivf~~~------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 79 (150)
..+++||..+ =..|..+...|...++....+.=...+..+..+.+.
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~ 68 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEY 68 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH
Confidence 4589999875 446788888888877766555433345555544443
No 181
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=51.14 E-value=4.9 Score=24.45 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=26.1
Q ss_pred CCCeeEEehhhhh---------HHHHHhhccccCceEEEecCCC
Q psy17637 34 VPPALMNLAMQLN---------AEELANSLTVKEYDVLLLHGDM 68 (150)
Q Consensus 34 ~~~~ivf~~~~~~---------~~~l~~~L~~~~~~~~~~~~~~ 68 (150)
..++|+||.+-.. +..++..|...|+.+..+.||+
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~ 126 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 126 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCH
Confidence 4689999987544 3456677777777888999985
No 182
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=50.89 E-value=17 Score=25.06 Aligned_cols=37 Identities=14% Similarity=-0.014 Sum_probs=27.6
Q ss_pred CCCCCeeEEehhh-hhHHHHHhhccccCc-eEEEecCCC
Q psy17637 32 QEVPPALMNLAMQ-LNAEELANSLTVKEY-DVLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~-~~~~~l~~~L~~~~~-~~~~~~~~~ 68 (150)
.+..++||||.+- ..+..++..|...|+ .+..+.|++
T Consensus 75 ~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 113 (277)
T 3aay_A 75 ANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGR 113 (277)
T ss_dssp CTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHH
T ss_pred CCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCH
Confidence 3567899999874 346677778888887 577888874
No 183
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=50.12 E-value=33 Score=27.17 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=45.7
Q ss_pred CCCCeeEEehhhhhHHHHHhhcc---ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-----CCcccCC-ccCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLT---VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-----VAARGLD-IPHI 103 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~---~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~Gid-i~~~ 103 (150)
.+.++++.++++.-+...++.+. ..+.++..++|+....++ ..+..+|+|+|. .+..+.. +.++
T Consensus 67 ~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~ 139 (702)
T 2p6r_A 67 KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAV 139 (702)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGC
T ss_pred hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhc
Confidence 35789999999988888877763 247889999998754332 124568899984 1222222 4566
Q ss_pred cEEEE
Q psy17637 104 RTVVN 108 (150)
Q Consensus 104 ~~vi~ 108 (150)
.+||.
T Consensus 140 ~~vIi 144 (702)
T 2p6r_A 140 SCLVV 144 (702)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 66663
No 184
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=49.85 E-value=57 Score=22.59 Aligned_cols=61 Identities=10% Similarity=0.203 Sum_probs=40.1
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCC-C-CHHHHHHHHHHhhcCCceEEEEcCCC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGD-M-DQSERNSVITKFKRQECRILVATDVA 94 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~-~-~~~~r~~~~~~f~~g~~~vlv~T~~~ 94 (150)
...++|+|.+.+.+++....+.+.|..+.....+ + +++-++++.+.-+.|...+.+.+.++
T Consensus 60 ~pD~VVe~A~~~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSGAi 122 (253)
T 1j5p_A 60 DVSTVVECASPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAI 122 (253)
T ss_dssp TCCEEEECSCHHHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTTC
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCCcc
Confidence 4578889988888887555566677776666543 2 55556666666666766666655443
No 185
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=49.66 E-value=16 Score=27.26 Aligned_cols=68 Identities=13% Similarity=0.073 Sum_probs=40.3
Q ss_pred CCCeeEEehhhhhHHHHHhhccc-----cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CC-----c-ccCCcc
Q psy17637 34 VPPALMNLAMQLNAEELANSLTV-----KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VA-----A-RGLDIP 101 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~-~Gidi~ 101 (150)
..++||.++++.-+..++..+.. .+..+....++.... ........|+|+|. .+ . ..+++.
T Consensus 162 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~ 234 (479)
T 3fmp_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (479)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-------TTCCCCCSEEEECHHHHHHHHTTSCCCCGG
T ss_pred CCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-------ccccCCCCEEEECchHHHHHHHhcCCcCcc
Confidence 34899999999988777555432 245566666553211 11123347999994 22 1 245667
Q ss_pred CCcEEEE
Q psy17637 102 HIRTVVN 108 (150)
Q Consensus 102 ~~~~vi~ 108 (150)
++.+||.
T Consensus 235 ~~~~iVi 241 (479)
T 3fmp_B 235 KIKVFVL 241 (479)
T ss_dssp GCCEEEE
T ss_pred cCCEEEE
Confidence 7777763
No 186
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=48.71 E-value=7.4 Score=29.81 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=32.2
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 69 (150)
.+..++++||.+-..+...+..|...|+.+..+.|++.
T Consensus 522 ~~~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~ 559 (565)
T 3ntd_A 522 PKDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYR 559 (565)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CCcCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHH
Confidence 45678999999988888899999988988888999863
No 187
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=48.39 E-value=50 Score=23.03 Aligned_cols=61 Identities=3% Similarity=0.138 Sum_probs=41.0
Q ss_pred CeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCC
Q psy17637 36 PALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLD 99 (150)
Q Consensus 36 ~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 99 (150)
.++|-+.+.+.+..+...+.+.+.++..-+.++++++..++.+.-+ +..++++++ ++.|++
T Consensus 75 DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s~~~~~~L~~aa~--~~~vv~a~N-~s~Gv~ 135 (272)
T 4f3y_A 75 DYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGE--KIALVFSAN-MSVGVN 135 (272)
T ss_dssp SEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHTT--TSEEEECSC-CCHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhc--cCCEEEECC-CCHHHH
Confidence 5777666777777777777788888888788888877666555433 356665554 444544
No 188
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=48.27 E-value=41 Score=23.47 Aligned_cols=39 Identities=13% Similarity=0.299 Sum_probs=31.5
Q ss_pred hhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc
Q psy17637 43 MQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82 (150)
Q Consensus 43 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 82 (150)
+..-++.|...|...|+.+. ++..++.++-.+.++.|..
T Consensus 47 t~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 47 THLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHH
Confidence 44568889999998898864 5667999999999999875
No 189
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=48.19 E-value=34 Score=19.04 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=24.7
Q ss_pred hhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHh
Q psy17637 43 MQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80 (150)
Q Consensus 43 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 80 (150)
+++.+..+...|...++....+.=..+++.+..+.+..
T Consensus 17 ~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~ 54 (93)
T 1t1v_A 17 IKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLA 54 (93)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHh
Confidence 34444778888888887766666556666666555554
No 190
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=46.11 E-value=53 Score=22.75 Aligned_cols=46 Identities=9% Similarity=0.213 Sum_probs=34.2
Q ss_pred hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 44 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.+.++++.+.|+ .++-++..|.+.+.+. +.+..+-+|.+.++|+|.
T Consensus 125 f~~~~~~v~~lk-~d~IIv~~H~g~tsek--~~la~~~dg~Vd~VvGgH 170 (252)
T 2z06_A 125 FRALDRLLEEEK-ADYVLVEVHAEATSEK--MALAHYLDGRASAVLGTH 170 (252)
T ss_dssp HHHHHHHHHHCC-CSEEEEEEECSCHHHH--HHHHHHHBTTBSEEEEES
T ss_pred HHHHHHHHHHhC-CCEEEEEeCCCcHHHH--HHHHHhCCCCeEEEEcCC
Confidence 445777777887 6777889999876542 356666778899999985
No 191
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=45.70 E-value=79 Score=24.08 Aligned_cols=97 Identities=14% Similarity=0.122 Sum_probs=58.1
Q ss_pred HHHHHHhccCCCCCeeEEehhhhhHHHHHhhcccc-CceEEEecC-------CCC-----HHHHHHHHHHhhcCCceEEE
Q psy17637 23 LVRNLEGANQEVPPALMNLAMQLNAEELANSLTVK-EYDVLLLHG-------DMD-----QSERNSVITKFKRQECRILV 89 (150)
Q Consensus 23 ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~~~~-------~~~-----~~~r~~~~~~f~~g~~~vlv 89 (150)
++..+... ...++||.|++...++.++..|..- +-.+..+-. ... ...|..++..+..++..|+|
T Consensus 30 ~~a~l~~~--~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv 107 (483)
T 3hjh_A 30 LVAEIAER--HAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLI 107 (483)
T ss_dssp HHHHHHHH--SSSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEE
T ss_pred HHHHHHHH--hCCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHHHHHHHhCCCCEEE
Confidence 34444433 3568999999999999999888642 112332221 111 13577788888888878888
Q ss_pred Ec-CCCcccCCcc----CCcEEEEecCCCChhHHHHh
Q psy17637 90 AT-DVAARGLDIP----HIRTVVNYDLARDIDTHTHR 121 (150)
Q Consensus 90 ~T-~~~~~Gidi~----~~~~vi~~~~~~~~~~~~q~ 121 (150)
+| +++-.-+.-+ .....+..+-..+...+.++
T Consensus 108 ~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~ 144 (483)
T 3hjh_A 108 VPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQ 144 (483)
T ss_dssp EEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHH
T ss_pred EEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHH
Confidence 88 3333222222 23455666666677776654
No 192
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=45.51 E-value=35 Score=18.98 Aligned_cols=69 Identities=4% Similarity=-0.063 Sum_probs=33.4
Q ss_pred cCceEEEecCCCCHHHHHHHHHHhhc----CCceEEEEcCCCcccCCccCCcEEEEecCCCChhHHHHhhcccc
Q psy17637 57 KEYDVLLLHGDMDQSERNSVITKFKR----QECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTG 126 (150)
Q Consensus 57 ~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~ 126 (150)
....+..+.-.++.......++.++. ....+++.|...... ..-.....-.+.-|.+...+.+++.++.
T Consensus 44 ~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~-~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 44 LQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD-PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp HCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS-HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred cCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch-hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 34556666655544344455555543 234555555432221 1111111122345777788777776654
No 193
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=45.44 E-value=66 Score=22.62 Aligned_cols=33 Identities=12% Similarity=0.002 Sum_probs=12.6
Q ss_pred eEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcC
Q psy17637 60 DVLLLHGDMDQSERNSVITKFK-RQECRILVATD 92 (150)
Q Consensus 60 ~~~~~~~~~~~~~r~~~~~~f~-~g~~~vlv~T~ 92 (150)
++..-.|+.+-.+-.+..+... .|---+++.++
T Consensus 78 pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 111 (297)
T 3flu_A 78 PVIAGTGANNTVEAIALSQAAEKAGADYTLSVVP 111 (297)
T ss_dssp CEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred cEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 3343344443333333333332 23334444443
No 194
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=45.28 E-value=8.8 Score=28.90 Aligned_cols=38 Identities=11% Similarity=-0.029 Sum_probs=31.2
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 69 (150)
.+..++++||.+-..+...+..|...|++ +..+.|++.
T Consensus 425 ~~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~ 463 (474)
T 3tp9_A 425 PRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYE 463 (474)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHH
Confidence 45678999999988888888888888885 888888853
No 195
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=45.10 E-value=72 Score=21.84 Aligned_cols=58 Identities=7% Similarity=0.032 Sum_probs=39.8
Q ss_pred CCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC-CceEEEEcC
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ-ECRILVATD 92 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~ 92 (150)
..++|=+.+.+....+.....+.+.++..-+.+++.++...+.+.-+.. ...++++++
T Consensus 46 ~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N 104 (245)
T 1p9l_A 46 TEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPN 104 (245)
T ss_dssp CCEEEECSCTTTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSC
T ss_pred CcEEEEccChHHHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECC
Confidence 3577734466666777777677888888777788887776666655544 567777665
No 196
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=44.67 E-value=41 Score=18.88 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc
Q psy17637 17 KEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82 (150)
Q Consensus 17 ~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 82 (150)
...+...+..+... ...-+++|.++..+..+...+.-+...+.+..-. -.++.+....+..|..
T Consensus 35 edelkkyleefrke-sqnikvlilvsndeeldkakelaqkmeidvrtrk-vtspdeakrwikefse 98 (110)
T 2kpo_A 35 EDELKKYLEEFRKE-SQNIKVLILVSNDEELDKAKELAQKMEIDVRTRK-VTSPDEAKRWIKEFSE 98 (110)
T ss_dssp HHHHHHHHHHHTSS-TTSEEEEEEESSHHHHHHHHHHHHHTTCCEEEEE-CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-ccCeEEEEEEcChHHHHHHHHHHHhhceeeeeee-cCChHHHHHHHHHHhh
Confidence 33344566666655 4556788999888776655554444444443322 2458888889999875
No 197
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI, protein STR initiative; 2.30A {Deinococcus radiodurans} SCOP: d.159.1.9
Probab=44.67 E-value=39 Score=23.40 Aligned_cols=45 Identities=7% Similarity=0.011 Sum_probs=31.9
Q ss_pred hhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 45 LNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 45 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
+.++++.+.| ..++-++..|++.+.+.+ .+..+-+|.+.++|+|.
T Consensus 129 ~~~~~~v~~l-~~d~IIv~~H~e~t~Ek~--~la~~~dg~vd~VvGgH 173 (255)
T 1t70_A 129 RTMDALLERD-DLGTVFVDFHAEATSEKE--AMGWHLAGRVAAVIGTH 173 (255)
T ss_dssp HHHHHHTTCS-SCCEEEEEEECSCHHHHH--HHHHHHTTSSSEEEEES
T ss_pred HHHHHHHHHh-CCCEEEEEeCCCChHHHH--HHHHhCCCCeEEEEeCC
Confidence 4466677777 556778899998755433 35556678899999985
No 198
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.56 E-value=46 Score=19.42 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=30.0
Q ss_pred CCeeEEehh-------hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHh
Q psy17637 35 PPALMNLAM-------QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80 (150)
Q Consensus 35 ~~~ivf~~~-------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 80 (150)
.+++||+.+ ++.++.+...|...++.+..+.=..+++.++.+.+.+
T Consensus 8 m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 8 MVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred cEEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 356666533 3334478888888888777776666677776666554
No 199
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=44.47 E-value=25 Score=19.63 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhcc
Q psy17637 17 KEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLT 55 (150)
Q Consensus 17 ~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~ 55 (150)
++.+..|.+.+.++....-++-|-..++++++.++..|.
T Consensus 30 qkvlnelmdyikkqgakrvrisitartkkeaekfaaili 68 (106)
T 1qys_A 30 QKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILI 68 (106)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHH
Confidence 345556667777665556667777889999998887774
No 200
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=43.84 E-value=77 Score=22.40 Aligned_cols=12 Identities=8% Similarity=0.235 Sum_probs=5.3
Q ss_pred CCHHHHHHHHHH
Q psy17637 68 MDQSERNSVITK 79 (150)
Q Consensus 68 ~~~~~r~~~~~~ 79 (150)
++.+||.++++.
T Consensus 65 Lt~~Er~~v~~~ 76 (304)
T 3l21_A 65 TTDGEKIELLRA 76 (304)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 344444444443
No 201
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=43.84 E-value=13 Score=28.55 Aligned_cols=36 Identities=17% Similarity=0.096 Sum_probs=30.3
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecC-CC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHG-DM 68 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~-~~ 68 (150)
+..++++||.+-..+...+..|...|+.+..+.| ++
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~ 357 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSE 357 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCCh
Confidence 4678999999877777888889888998888999 75
No 202
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=43.70 E-value=43 Score=18.86 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=36.2
Q ss_pred HHHHHHHHHhccCCCCCeeEEehh--hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhh
Q psy17637 20 AGHLVRNLEGANQEVPPALMNLAM--QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81 (150)
Q Consensus 20 ~~~ll~~l~~~~~~~~~~ivf~~~--~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 81 (150)
+..++..+.. .++|.+||++. ...+.++...-+..|+....+.+. ++++-.+-.+.|.
T Consensus 40 irdiiksmkd---ngkplvvfvngasqndvnefqneakkegvsydvlkst-dpeeltqrvrefl 99 (112)
T 2lnd_A 40 IRDIIKSMKD---NGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKST-DPEELTQRVREFL 99 (112)
T ss_dssp HHHHHHHHTT---CCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---cCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccC-CHHHHHHHHHHHH
Confidence 3455555544 57889999976 334556666666678777777664 4555555555554
No 203
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=43.59 E-value=78 Score=22.33 Aligned_cols=10 Identities=10% Similarity=-0.187 Sum_probs=4.7
Q ss_pred CCceEEEEcC
Q psy17637 83 QECRILVATD 92 (150)
Q Consensus 83 g~~~vlv~T~ 92 (150)
|---+++.++
T Consensus 106 Gadavlv~~P 115 (303)
T 2wkj_A 106 GFDAVSAVTP 115 (303)
T ss_dssp TCSEEEEECC
T ss_pred CCCEEEecCC
Confidence 4434555554
No 204
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=43.01 E-value=20 Score=22.34 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=14.4
Q ss_pred HHHhhccccCc---eEEEecCCCC
Q psy17637 49 ELANSLTVKEY---DVLLLHGDMD 69 (150)
Q Consensus 49 ~l~~~L~~~~~---~~~~~~~~~~ 69 (150)
.++..|...|+ .+..+.||+.
T Consensus 88 ~~~~~L~~~G~~~~~v~~L~GG~~ 111 (152)
T 2j6p_A 88 RFALAQKKLGYVLPAVYVLRGGWE 111 (152)
T ss_dssp HHHHHHHHHTCCCSEEEEETTHHH
T ss_pred HHHHHHHHcCCCCCCEEEEcCcHH
Confidence 44466766675 6788999863
No 205
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=42.98 E-value=89 Score=24.75 Aligned_cols=65 Identities=25% Similarity=0.240 Sum_probs=43.6
Q ss_pred CCCeeEEehhhhhHHHHHhhcccc--CceEEEec--------------------CCC--C---HHHHHHHHHHhhcCCce
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVK--EYDVLLLH--------------------GDM--D---QSERNSVITKFKRQECR 86 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~--------------------~~~--~---~~~r~~~~~~f~~g~~~ 86 (150)
..++||.+++...+..++..|..- +..+..+- ... + ...|..++..+..+...
T Consensus 53 ~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~~~~i~~~R~~~l~~L~~~~~~ 132 (664)
T 1c4o_A 53 GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDV 132 (664)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHHHHHHHHHHHHHHCSCE
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhcccCHHHHHHHHHHHHHHHhCCCe
Confidence 458999999999999999888654 22232222 222 2 45777888888777767
Q ss_pred EEEEc-CCCcccCC
Q psy17637 87 ILVAT-DVAARGLD 99 (150)
Q Consensus 87 vlv~T-~~~~~Gid 99 (150)
|+|+| +++ .++-
T Consensus 133 ivV~s~~~l-~~~~ 145 (664)
T 1c4o_A 133 IVVASVSAI-YGLG 145 (664)
T ss_dssp EEEEEGGGC-SCCC
T ss_pred EEEecHHHH-hcCC
Confidence 88888 444 6543
No 206
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=42.97 E-value=86 Score=22.15 Aligned_cols=10 Identities=20% Similarity=0.086 Sum_probs=4.4
Q ss_pred CCceEEEEcC
Q psy17637 83 QECRILVATD 92 (150)
Q Consensus 83 g~~~vlv~T~ 92 (150)
|---+++.++
T Consensus 109 Gadavlv~~P 118 (307)
T 3s5o_A 109 GADAAMVVTP 118 (307)
T ss_dssp TCSEEEEECC
T ss_pred CCCEEEEcCC
Confidence 3334444443
No 207
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=42.80 E-value=21 Score=26.40 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=30.1
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCc-eEEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEY-DVLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~ 68 (150)
.+..++++||.+-..+...+..|...|+ .+..+.|++
T Consensus 356 ~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~ 393 (423)
T 2wlr_A 356 KPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGW 393 (423)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHH
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccH
Confidence 4567899999998888888888888888 478888884
No 208
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=42.77 E-value=86 Score=22.11 Aligned_cols=12 Identities=8% Similarity=0.227 Sum_probs=5.1
Q ss_pred CCHHHHHHHHHH
Q psy17637 68 MDQSERNSVITK 79 (150)
Q Consensus 68 ~~~~~r~~~~~~ 79 (150)
++.+||.++++.
T Consensus 66 Ls~~Er~~v~~~ 77 (304)
T 3cpr_A 66 TTAAEKLELLKA 77 (304)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 344444444433
No 209
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=42.33 E-value=21 Score=22.54 Aligned_cols=28 Identities=32% Similarity=0.531 Sum_probs=16.3
Q ss_pred cCCccCCcEEEEecCCCChhHHHHhhccccCCCCccEEEEEE
Q psy17637 97 GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLV 138 (150)
Q Consensus 97 Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~~~~~~~~ 138 (150)
++|+.++++|| ..||.|=+|. |.-+++.
T Consensus 88 AvD~~dADlvI-------------ARGRLGvPGS-GSmLvim 115 (156)
T 3brc_A 88 ALDISGADLVI-------------ARGRLGVPGS-GSLLVIM 115 (156)
T ss_dssp HHHHHCCSEEE-------------EEEECSSTTS-CEEEEEE
T ss_pred heeccCCcEEE-------------EcccccCCCC-ccEEEEE
Confidence 56666777766 4567666663 3333333
No 210
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=42.26 E-value=87 Score=22.06 Aligned_cols=35 Identities=9% Similarity=0.032 Sum_probs=14.8
Q ss_pred ceEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcCC
Q psy17637 59 YDVLLLHGDMDQSERNSVITKFK-RQECRILVATDV 93 (150)
Q Consensus 59 ~~~~~~~~~~~~~~r~~~~~~f~-~g~~~vlv~T~~ 93 (150)
.++..-.|+.+-.+-.+..+... .|---+++.++.
T Consensus 82 vpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~ 117 (301)
T 1xky_A 82 VPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPY 117 (301)
T ss_dssp SCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred ceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 34444444444433333333332 244445555543
No 211
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=42.03 E-value=22 Score=26.95 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=36.7
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc----CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC-CCc-----ccCCccC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK----EYDVLLLHGDMDQSERNSVITKFKRQECRILVATD-VAA-----RGLDIPH 102 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~-----~Gidi~~ 102 (150)
...++|+.++++.-+...++.+... +.......++.... -......|+|+|. .+. ..+++..
T Consensus 188 ~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~ 259 (508)
T 3fho_A 188 PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK--------GAKIDAQIVIGTPGTVMDLMKRRQLDARD 259 (508)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------CCCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc--------cccCCCCEEEECHHHHHHHHHcCCccccC
Confidence 4568999999998888777766543 33333333332111 1122467999984 221 2345666
Q ss_pred CcEEEE
Q psy17637 103 IRTVVN 108 (150)
Q Consensus 103 ~~~vi~ 108 (150)
+++||.
T Consensus 260 ~~lIIi 265 (508)
T 3fho_A 260 IKVFVL 265 (508)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777663
No 212
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=41.27 E-value=90 Score=21.86 Aligned_cols=35 Identities=17% Similarity=0.057 Sum_probs=15.9
Q ss_pred ceEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcCC
Q psy17637 59 YDVLLLHGDMDQSERNSVITKFK-RQECRILVATDV 93 (150)
Q Consensus 59 ~~~~~~~~~~~~~~r~~~~~~f~-~g~~~vlv~T~~ 93 (150)
.++..-.|+.+-.+-.+..+... .|---+++.++.
T Consensus 70 vpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~ 105 (294)
T 2ehh_A 70 IKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPY 105 (294)
T ss_dssp SEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred CcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 44444445544444333333333 344456666543
No 213
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=40.90 E-value=90 Score=21.78 Aligned_cols=35 Identities=14% Similarity=-0.029 Sum_probs=15.4
Q ss_pred ceEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcCC
Q psy17637 59 YDVLLLHGDMDQSERNSVITKFK-RQECRILVATDV 93 (150)
Q Consensus 59 ~~~~~~~~~~~~~~r~~~~~~f~-~g~~~vlv~T~~ 93 (150)
.++..-.|+.+-.+-.+..+... .|---+++.++.
T Consensus 70 ~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 105 (289)
T 2yxg_A 70 VQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPY 105 (289)
T ss_dssp SEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 34444445544433333333333 344456665543
No 214
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=40.78 E-value=80 Score=22.09 Aligned_cols=35 Identities=14% Similarity=0.013 Sum_probs=16.7
Q ss_pred ceEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcCC
Q psy17637 59 YDVLLLHGDMDQSERNSVITKFK-RQECRILVATDV 93 (150)
Q Consensus 59 ~~~~~~~~~~~~~~r~~~~~~f~-~g~~~vlv~T~~ 93 (150)
.++..-.|+.+-.+-.+..+... .|---+++.++.
T Consensus 71 ~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 106 (291)
T 3a5f_A 71 IPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPY 106 (291)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred CcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 44555555555444433333333 344456666653
No 215
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=40.75 E-value=61 Score=27.16 Aligned_cols=37 Identities=8% Similarity=0.244 Sum_probs=29.8
Q ss_pred CCCCeeEEehhhhhHHHHHhhcccc--CceEEEecCCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVK--EYDVLLLHGDMD 69 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~ 69 (150)
.+.++||.++++.-+...+..|... +..+..++|+.+
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~ 119 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ 119 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 4568999999999998888888764 568899999864
No 216
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=40.42 E-value=90 Score=22.03 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=13.6
Q ss_pred ceEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcC
Q psy17637 59 YDVLLLHGDMDQSERNSVITKFK-RQECRILVATD 92 (150)
Q Consensus 59 ~~~~~~~~~~~~~~r~~~~~~f~-~g~~~vlv~T~ 92 (150)
.++..-.|+.+-.+-.+..+... .|---+++.++
T Consensus 82 vpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P 116 (306)
T 1o5k_A 82 IPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTP 116 (306)
T ss_dssp SCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred CeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCC
Confidence 33444444444333333333222 24444555554
No 217
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=40.35 E-value=13 Score=26.13 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=40.8
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 82 (150)
+.+-+|||.++...++.|...|...|+.+. .+..++.++-.+.++.|..
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~ 90 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGYEVQ-KFLHLSMHGISQILGQFAC 90 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTEEEE-EEESCBHHHHHHHHHHHHT
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 345689999998888899999998898765 5667899999999999875
No 218
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=40.35 E-value=18 Score=26.45 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=27.5
Q ss_pred CCCCCeeEEe-hhh-hhHHHHHhhccccCceEEEecCCCC
Q psy17637 32 QEVPPALMNL-AMQ-LNAEELANSLTVKEYDVLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~-~~~-~~~~~l~~~L~~~~~~~~~~~~~~~ 69 (150)
.+..++|||| .+- ..+..++..|...|+.+..+.||+.
T Consensus 93 ~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~ 132 (373)
T 1okg_A 93 AGELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQ 132 (373)
T ss_dssp SSSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHH
Confidence 3567899999 443 3334677778777888889999974
No 219
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=40.00 E-value=52 Score=18.73 Aligned_cols=47 Identities=6% Similarity=-0.014 Sum_probs=30.1
Q ss_pred CCeeEEeh-----h-hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhh
Q psy17637 35 PPALMNLA-----M-QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81 (150)
Q Consensus 35 ~~~ivf~~-----~-~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 81 (150)
.+++||+. . =..|..+...|...++.+..+.=...+..+..+...+.
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g 69 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSN 69 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHT
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHC
Confidence 47999985 2 23577888888777777666655555655555544443
No 220
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=39.83 E-value=70 Score=23.14 Aligned_cols=46 Identities=11% Similarity=0.240 Sum_probs=23.2
Q ss_pred HHHHHhhccccCceEEEecCC------CCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 47 AEELANSLTVKEYDVLLLHGD------MDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 47 ~~~l~~~L~~~~~~~~~~~~~------~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.+.+.++|...|+.-.++.|. ++.+||.++++..-.|...|++++.
T Consensus 49 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~~~grvpViaGvg 100 (344)
T 2hmc_A 49 LVRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVERLVKAGIPVIVGTG 100 (344)
T ss_dssp HHHHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHHHhCCCCcEEEecC
Confidence 344444444445444444432 5666666666553345555665553
No 221
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=39.82 E-value=70 Score=22.68 Aligned_cols=34 Identities=3% Similarity=-0.000 Sum_probs=14.2
Q ss_pred ceEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcC
Q psy17637 59 YDVLLLHGDMDQSERNSVITKFK-RQECRILVATD 92 (150)
Q Consensus 59 ~~~~~~~~~~~~~~r~~~~~~f~-~g~~~vlv~T~ 92 (150)
+++..-.|+.+-.+-.+..+... .|---+++.++
T Consensus 78 vpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 112 (309)
T 3fkr_A 78 VPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPP 112 (309)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 33444444444443333333333 24444555554
No 222
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=39.80 E-value=95 Score=21.72 Aligned_cols=36 Identities=8% Similarity=-0.075 Sum_probs=16.6
Q ss_pred ceEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcCCC
Q psy17637 59 YDVLLLHGDMDQSERNSVITKFK-RQECRILVATDVA 94 (150)
Q Consensus 59 ~~~~~~~~~~~~~~r~~~~~~f~-~g~~~vlv~T~~~ 94 (150)
.++..-.|+.+-.+-.+..+... .|---+++.++..
T Consensus 74 vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 110 (293)
T 1f6k_A 74 IALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFY 110 (293)
T ss_dssp SEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred CeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 44444455544444333333333 3544566666543
No 223
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=39.69 E-value=56 Score=19.07 Aligned_cols=86 Identities=14% Similarity=-0.047 Sum_probs=44.0
Q ss_pred eEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc----CCceEEEEcCCCcccCC--ccCCcEEEEecC
Q psy17637 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR----QECRILVATDVAARGLD--IPHIRTVVNYDL 111 (150)
Q Consensus 38 ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~Gid--i~~~~~vi~~~~ 111 (150)
+..+.+.+.+ ...+......+..+.-.++.......++.++. ....|++.|.......- .-.....-.+.-
T Consensus 34 v~~~~~~~~a---~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~k 110 (142)
T 3cg4_A 34 IISADSGGQC---IDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITK 110 (142)
T ss_dssp EEEESSHHHH---HHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEES
T ss_pred EEEeCCHHHH---HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeC
Confidence 3444443333 33333445667777766554444556666654 34567766644322111 112222333456
Q ss_pred CCChhHHHHhhcccc
Q psy17637 112 ARDIDTHTHRIGRTG 126 (150)
Q Consensus 112 ~~~~~~~~q~~GR~~ 126 (150)
|.+...+.+++.++.
T Consensus 111 p~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 111 PFDNEDLIEKTTFFM 125 (142)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 888888877665544
No 224
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=39.29 E-value=57 Score=19.06 Aligned_cols=71 Identities=7% Similarity=0.032 Sum_probs=39.6
Q ss_pred cCceEEEecCCCCHHHHHHHHHHhhc------CCceEEEEcCCCccc-----CCccCCcEEEEecCCCChhHHHHhhccc
Q psy17637 57 KEYDVLLLHGDMDQSERNSVITKFKR------QECRILVATDVAARG-----LDIPHIRTVVNYDLARDIDTHTHRIGRT 125 (150)
Q Consensus 57 ~~~~~~~~~~~~~~~~r~~~~~~f~~------g~~~vlv~T~~~~~G-----idi~~~~~vi~~~~~~~~~~~~q~~GR~ 125 (150)
..+.+..+.-.|+.......++.++. ....+++.|...... .....+.. .+.-|.+...+.+++.++
T Consensus 59 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~--~l~KP~~~~~L~~~i~~~ 136 (146)
T 3ilh_A 59 RWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDY--YVSKPLTANALNNLYNKV 136 (146)
T ss_dssp CCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCE--EECSSCCHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcce--eeeCCCCHHHHHHHHHHH
Confidence 34566777766655445555555544 455677776543221 11111222 334688899999888776
Q ss_pred cCCC
Q psy17637 126 GRAG 129 (150)
Q Consensus 126 ~R~g 129 (150)
...+
T Consensus 137 ~~~~ 140 (146)
T 3ilh_A 137 LNEG 140 (146)
T ss_dssp HCC-
T ss_pred HHhc
Confidence 6543
No 225
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=39.21 E-value=80 Score=22.08 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=13.5
Q ss_pred ceEEEecCCCCHHHHHHHHHHhhc-CCceEEEEcC
Q psy17637 59 YDVLLLHGDMDQSERNSVITKFKR-QECRILVATD 92 (150)
Q Consensus 59 ~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~ 92 (150)
.++..-.|+.+-.+-.+..+...+ |---+++.++
T Consensus 71 ~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 105 (292)
T 2ojp_A 71 IPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTP 105 (292)
T ss_dssp SCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECC
T ss_pred CcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCC
Confidence 334444444443333333333322 3334555554
No 226
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=39.17 E-value=67 Score=20.07 Aligned_cols=40 Identities=15% Similarity=0.330 Sum_probs=31.1
Q ss_pred hhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC
Q psy17637 43 MQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ 83 (150)
Q Consensus 43 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 83 (150)
+...++.|...|...|+.+. ++..++.++-.+.++.|...
T Consensus 39 t~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 39 TDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKE 78 (146)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHHh
Confidence 44467888888888898855 55678999999999998754
No 227
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=38.98 E-value=61 Score=19.29 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=46.3
Q ss_pred eEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc--CCceEEEEcCCCcc-----cCCccCCcEEEEec
Q psy17637 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR--QECRILVATDVAAR-----GLDIPHIRTVVNYD 110 (150)
Q Consensus 38 ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~-----Gidi~~~~~vi~~~ 110 (150)
+..+.+.+. ....+......+..+.-.++.......++.++. ....|++.|..... .+.. ++..+ +.
T Consensus 49 v~~~~~~~~---al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~-g~~~~--l~ 122 (150)
T 4e7p_A 49 VLQAKNGQE---AIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKA-GVDAY--VL 122 (150)
T ss_dssp EEEESSHHH---HHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHT-TCSEE--EE
T ss_pred EEEECCHHH---HHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHC-CCcEE--Ee
Confidence 444444433 334444555677777766665555566666654 34566666643321 1111 22222 23
Q ss_pred CCCChhHHHHhhccccCC
Q psy17637 111 LARDIDTHTHRIGRTGRA 128 (150)
Q Consensus 111 ~~~~~~~~~q~~GR~~R~ 128 (150)
-|.+...+..++.++.+.
T Consensus 123 Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 123 KERSIADLMQTLHTVLEG 140 (150)
T ss_dssp TTSCHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHcC
Confidence 577888888888776554
No 228
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=38.87 E-value=63 Score=19.41 Aligned_cols=72 Identities=10% Similarity=0.052 Sum_probs=39.0
Q ss_pred HhhccccCceEEEecCCCCHHHHHHHHHHhhc----CCceEEEEcCCCccc-----CCccCCcEEEEecCCCChhHHHHh
Q psy17637 51 ANSLTVKEYDVLLLHGDMDQSERNSVITKFKR----QECRILVATDVAARG-----LDIPHIRTVVNYDLARDIDTHTHR 121 (150)
Q Consensus 51 ~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~G-----idi~~~~~vi~~~~~~~~~~~~q~ 121 (150)
...+....+.+..+.-.|+......+++.++. ....|++.|...... +.. ++.. .+.-|.+...+.++
T Consensus 44 l~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~-g~~~--~l~KP~~~~~l~~~ 120 (154)
T 3gt7_A 44 VRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLEC-GADD--FITKPCKDVVLASH 120 (154)
T ss_dssp HHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHH-CCSE--EEESSCCHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHC-CCCE--EEeCCCCHHHHHHH
Confidence 33444455667777766665555666666654 345677666432211 111 2222 23357778887776
Q ss_pred hccc
Q psy17637 122 IGRT 125 (150)
Q Consensus 122 ~GR~ 125 (150)
+.++
T Consensus 121 i~~~ 124 (154)
T 3gt7_A 121 VKRL 124 (154)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 229
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=38.85 E-value=89 Score=21.88 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=16.5
Q ss_pred ceEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcCC
Q psy17637 59 YDVLLLHGDMDQSERNSVITKFK-RQECRILVATDV 93 (150)
Q Consensus 59 ~~~~~~~~~~~~~~r~~~~~~f~-~g~~~vlv~T~~ 93 (150)
.++..-.|..+-.+-.+..+... .|---+++.++.
T Consensus 72 vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 107 (292)
T 3daq_A 72 VPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPY 107 (292)
T ss_dssp SCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 44444445544444444333333 354456666643
No 230
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=38.71 E-value=86 Score=21.98 Aligned_cols=35 Identities=9% Similarity=-0.121 Sum_probs=14.8
Q ss_pred ceEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcCC
Q psy17637 59 YDVLLLHGDMDQSERNSVITKFK-RQECRILVATDV 93 (150)
Q Consensus 59 ~~~~~~~~~~~~~~r~~~~~~f~-~g~~~vlv~T~~ 93 (150)
.++..-.|+.+-.+-.+..+... .|---+++.++.
T Consensus 73 ~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~ 108 (294)
T 3b4u_A 73 SRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPS 108 (294)
T ss_dssp GGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred CcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 34444445444433333333332 244445555543
No 231
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=38.50 E-value=96 Score=22.08 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=14.6
Q ss_pred ceEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcC
Q psy17637 59 YDVLLLHGDMDQSERNSVITKFK-RQECRILVATD 92 (150)
Q Consensus 59 ~~~~~~~~~~~~~~r~~~~~~f~-~g~~~vlv~T~ 92 (150)
.++..-.|+.+-.+-.+..+... .|---+++.++
T Consensus 81 vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 115 (318)
T 3qfe_A 81 FPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPP 115 (318)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34444444444444333333333 24444555554
No 232
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=38.44 E-value=84 Score=21.97 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=14.5
Q ss_pred ceEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcCC
Q psy17637 59 YDVLLLHGDMDQSERNSVITKFK-RQECRILVATDV 93 (150)
Q Consensus 59 ~~~~~~~~~~~~~~r~~~~~~f~-~g~~~vlv~T~~ 93 (150)
.++..-.|+.+-.+-.+..+... .|---+++.++.
T Consensus 71 ~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 106 (291)
T 3tak_A 71 IPIIAGTGANSTREAIELTKAAKDLGADAALLVTPY 106 (291)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 34444444444433333333332 244445555543
No 233
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=38.41 E-value=59 Score=18.96 Aligned_cols=75 Identities=13% Similarity=0.194 Sum_probs=41.8
Q ss_pred hccccCceEEEecCCCCHHHHHHHHHHhhc----CCceEEEEcCCCcccC---CccCCcEEEEecCCCChhHHHHhhccc
Q psy17637 53 SLTVKEYDVLLLHGDMDQSERNSVITKFKR----QECRILVATDVAARGL---DIPHIRTVVNYDLARDIDTHTHRIGRT 125 (150)
Q Consensus 53 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~Gi---di~~~~~vi~~~~~~~~~~~~q~~GR~ 125 (150)
.+....+.+..+.-.++.....+.++.++. ....|++.|....... ..-.....-.+.-|.+...+.+++.++
T Consensus 45 ~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~ 124 (140)
T 3grc_A 45 QVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRA 124 (140)
T ss_dssp HHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHH
Confidence 334445667777766665556666666664 3567777775432111 111112222344678888888777665
Q ss_pred cC
Q psy17637 126 GR 127 (150)
Q Consensus 126 ~R 127 (150)
.+
T Consensus 125 l~ 126 (140)
T 3grc_A 125 ID 126 (140)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 234
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=38.34 E-value=43 Score=26.60 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=38.8
Q ss_pred CCCeeEEehhhhhHHHHHhhccc---cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTV---KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
+.++++.++++.-+...++.+.. .++++..++|+.+...+. .+...|+|+|.
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tp 122 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATA 122 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECH
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECH
Confidence 56899999999998888887752 378899999987643321 23567888885
No 235
>3s5u_A Putative uncharacterized protein; crispr, crispr adaptation mechanism, NEW spacer aquisition, binding, DNA binding protein; 2.70A {Enterococcus faecalis}
Probab=38.22 E-value=76 Score=21.43 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHhccCCCCCeeEEehh-----hhhHHHHHhhccccCceEEEecCC
Q psy17637 16 DKEFAGHLVRNLEGANQEVPPALMNLAM-----QLNAEELANSLTVKEYDVLLLHGD 67 (150)
Q Consensus 16 ~~~~~~~ll~~l~~~~~~~~~~ivf~~~-----~~~~~~l~~~L~~~~~~~~~~~~~ 67 (150)
..+++...++..... ...+++||+|- .++...+.+.....++++.++-..
T Consensus 145 ~~e~i~~~lki~~el--~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~i~vL~IE~~ 199 (220)
T 3s5u_A 145 IFEKVMEITQVHRYL--SKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQR 199 (220)
T ss_dssp HHHHHHHHHHHHHHC--TTCCEEEEESGGGGCCHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHHHHHHHHHh--cCCCEEEEEChHHhCCHHHHHHHHHHHHHhCCeEEEEecc
Confidence 345555666666665 77899999986 446667777776667776666655
No 236
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=38.19 E-value=57 Score=18.72 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=20.7
Q ss_pred HhhccccCceEEEecCCCCHHHHHHHHHHhhcC--CceEEEEcC
Q psy17637 51 ANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ--ECRILVATD 92 (150)
Q Consensus 51 ~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv~T~ 92 (150)
.+.+....+.+..+.-.++.......++.++.. ...+++.|.
T Consensus 44 ~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~ 87 (130)
T 3eod_A 44 LELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISA 87 (130)
T ss_dssp HHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEEC
T ss_pred HHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEc
Confidence 334444456677777666655555666665542 345665554
No 237
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=38.11 E-value=79 Score=22.46 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=10.4
Q ss_pred CCHHHHHHHHHHhh---cCCceEEEEc
Q psy17637 68 MDQSERNSVITKFK---RQECRILVAT 91 (150)
Q Consensus 68 ~~~~~r~~~~~~f~---~g~~~vlv~T 91 (150)
++.+||.++++... .|...|++++
T Consensus 73 Ls~~Er~~v~~~~v~~~~grvpViaGv 99 (314)
T 3qze_A 73 LDVEEHIQVIRRVVDQVKGRIPVIAGT 99 (314)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeC
Confidence 44445544444332 2344444444
No 238
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=38.11 E-value=1.1e+02 Score=22.45 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=32.2
Q ss_pred hHHHHHhhccccCceEEEecCC------CCHHHHHHHHHHhh---cCCceEEEEcC
Q psy17637 46 NAEELANSLTVKEYDVLLLHGD------MDQSERNSVITKFK---RQECRILVATD 92 (150)
Q Consensus 46 ~~~~l~~~L~~~~~~~~~~~~~------~~~~~r~~~~~~f~---~g~~~vlv~T~ 92 (150)
..+.+.+++...|..-.++.|. ++.+||.++++... .|...|++++.
T Consensus 81 al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg 136 (360)
T 4dpp_A 81 AYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTG 136 (360)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecC
Confidence 4556677776777766666654 67888887776654 46677887774
No 239
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=38.10 E-value=68 Score=22.53 Aligned_cols=56 Identities=0% Similarity=0.134 Sum_probs=36.2
Q ss_pred CCeeEEehhhhhHHHHHhhccccCce-EEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.=+++|++.....+.+.+ +.+.+++ +..+..+++.++..++.+..+..... +++.+
T Consensus 72 Dv~ii~vp~~~~~~~v~e-a~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGPN 128 (294)
T 2yv1_A 72 NASVIFVPAPFAKDAVFE-AIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVK-IIGPN 128 (294)
T ss_dssp CEEEECCCHHHHHHHHHH-HHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE-EECSS
T ss_pred CEEEEccCHHHHHHHHHH-HHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcCC
Confidence 446778777665555554 4556777 66778899888777777776654433 44444
No 240
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=37.94 E-value=88 Score=22.45 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=29.5
Q ss_pred HHHHHhhccccCceEEEecCC------CCHHHHHHHHHHhh---cCCceEEEEcC
Q psy17637 47 AEELANSLTVKEYDVLLLHGD------MDQSERNSVITKFK---RQECRILVATD 92 (150)
Q Consensus 47 ~~~l~~~L~~~~~~~~~~~~~------~~~~~r~~~~~~f~---~g~~~vlv~T~ 92 (150)
.+.+.++|...|+.-.++.|. ++.++|.++++... .|...|++++.
T Consensus 57 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg 111 (332)
T 2r8w_A 57 FSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIG 111 (332)
T ss_dssp HHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 556666666666666666553 67777777776654 35667776664
No 241
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=37.89 E-value=53 Score=26.03 Aligned_cols=87 Identities=15% Similarity=0.177 Sum_probs=53.8
Q ss_pred CCCeeEEehhhhhHHHHHhhcccc--CceEEEec--------------------CCC--C---HHHHHHHHHHhhcCCce
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVK--EYDVLLLH--------------------GDM--D---QSERNSVITKFKRQECR 86 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~--------------------~~~--~---~~~r~~~~~~f~~g~~~ 86 (150)
..++||.+++...+..++..|..- ...+.++- ... + ...|..++..+..+...
T Consensus 57 ~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~~~~~~~i~~~Rl~~l~~L~~~~~~ 136 (661)
T 2d7d_A 57 NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSALFERRDV 136 (661)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCEEEECHHHHHHHHHHHHHHHHCSCE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhhcccCHHHHHHHHHHHHHHHhCCCe
Confidence 458999999999999998888653 11232222 111 1 45778888888777666
Q ss_pred EEEEc-CCCcccCCccC----CcEEEEecCCCChhHHHHh
Q psy17637 87 ILVAT-DVAARGLDIPH----IRTVVNYDLARDIDTHTHR 121 (150)
Q Consensus 87 vlv~T-~~~~~Gidi~~----~~~vi~~~~~~~~~~~~q~ 121 (150)
|+|+| +++ .++-.|. ....+-.+-..+...+.++
T Consensus 137 ivV~sv~al-~~l~~~~~~~~~~~~l~~G~~~~~~~l~~~ 175 (661)
T 2d7d_A 137 IIIASVSCI-YGLGSPEEYREMVVSLRTEMEIERNELLRK 175 (661)
T ss_dssp EEEECGGGG-SCBCCHHHHHHHCEEEETTCBCCHHHHHHH
T ss_pred EEEecHHHH-cCCCCHHHHHhccEEEeCCCEeCHHHHHHH
Confidence 88888 444 6654331 2234445555566666543
No 242
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=37.78 E-value=58 Score=18.70 Aligned_cols=75 Identities=19% Similarity=0.154 Sum_probs=40.2
Q ss_pred ccccCceEEEecCCCCHHHHHHHHHHhhcC----CceEEEEcCCCcccC-CccCCcEEEEecCCCChhHHHHhhccccCC
Q psy17637 54 LTVKEYDVLLLHGDMDQSERNSVITKFKRQ----ECRILVATDVAARGL-DIPHIRTVVNYDLARDIDTHTHRIGRTGRA 128 (150)
Q Consensus 54 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g----~~~vlv~T~~~~~Gi-di~~~~~vi~~~~~~~~~~~~q~~GR~~R~ 128 (150)
+......+..+.-.++.......++.++.. ...|++.|....... ..-.....-.+.-|.+...+.+++.++...
T Consensus 46 l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 46 LSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp HHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred HHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 333455677777666655556666666643 345666664332211 000111112345688888888888776544
No 243
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=37.01 E-value=1.2e+02 Score=23.27 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=24.3
Q ss_pred CCCCeeEEehhhhhHHHHH-hhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 33 EVPPALMNLAMQLNAEELA-NSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~-~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
...++|+.++++.-++... +.+...+..+..++++. ..+...|+|+|.
T Consensus 234 ~~~~vlil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~------------~~~~~~I~v~T~ 282 (590)
T 3h1t_A 234 RKPRILFLADRNVLVDDPKDKTFTPFGDARHKIEGGK------------VVKSREIYFAIY 282 (590)
T ss_dssp SCCCEEEEEC-----------CCTTTCSSEEECCC--------------CCSSCSEEEEEG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhcchhhhhhhccC------------CCCCCcEEEEEh
Confidence 5678999999988888877 67766555555555431 234567888883
No 244
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=36.93 E-value=99 Score=21.09 Aligned_cols=48 Identities=4% Similarity=-0.056 Sum_probs=34.7
Q ss_pred CCCeeEEehhhhhHHHHHhhccccC--ceEEEecCCCCHHHHHHHHHHhhcCC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKE--YDVLLLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
.+.+.|++++...++...+.|.+.+ -++.++ ....++.++.+.+.++-
T Consensus 26 d~~~yVla~~qrd~~W~rq~L~k~~~~~~~~V~---~~~~~~~~i~~~l~~~~ 75 (227)
T 3gr1_A 26 DKMLYVAAQNERDTLWARQVLARGDYDKNARVI---NENEENKRISIWLDTYY 75 (227)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCTTTEEEE---CHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEEccccHHHHHHHHHHhcCCcCCeEEE---ehHHHHHHHHHHHHhcC
Confidence 4678999999999999999887665 334444 45667777777776654
No 245
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=36.88 E-value=82 Score=20.12 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=30.4
Q ss_pred hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC
Q psy17637 44 QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ 83 (150)
Q Consensus 44 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 83 (150)
..-++.|...|...|+.+ .++..++.++-.+.++.|...
T Consensus 54 ~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~~ 92 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQLM 92 (164)
T ss_dssp HHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHHh
Confidence 455778888888888876 456778899999999988643
No 246
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=36.78 E-value=73 Score=22.42 Aligned_cols=56 Identities=2% Similarity=0.144 Sum_probs=35.7
Q ss_pred CCeeEEehhhhhHHHHHhhccccCce-EEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.=+++|++.....+.+.+ +.+.+++ +..+..+++.++..++.+..+..... +++.+
T Consensus 73 DvaIi~vp~~~~~~~v~e-a~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGPN 129 (297)
T 2yv2_A 73 NTSIVFVPAPFAPDAVYE-AVDAGIRLVVVITEGIPVHDTMRFVNYARQKGAT-IIGPN 129 (297)
T ss_dssp CEEEECCCGGGHHHHHHH-HHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE-EECSS
T ss_pred CEEEEecCHHHHHHHHHH-HHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcCC
Confidence 346777777555544444 4567787 66778899887777777766654433 44444
No 247
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=36.78 E-value=1e+02 Score=21.78 Aligned_cols=34 Identities=6% Similarity=0.004 Sum_probs=14.0
Q ss_pred ceEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcC
Q psy17637 59 YDVLLLHGDMDQSERNSVITKFK-RQECRILVATD 92 (150)
Q Consensus 59 ~~~~~~~~~~~~~~r~~~~~~f~-~g~~~vlv~T~ 92 (150)
.++..-.|+.+-.+-.+..+... .|---+++.+.
T Consensus 77 vpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 111 (313)
T 3dz1_A 77 MQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPP 111 (313)
T ss_dssp SEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 34444444444433333333332 24444555443
No 248
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=36.69 E-value=64 Score=18.85 Aligned_cols=73 Identities=10% Similarity=0.173 Sum_probs=41.1
Q ss_pred hhccccCceEEEecCCCCHHHHHHHHHHhhc--CCceEEEEcCCCcc-----cCCccCCcEEEEecCCCChhHHHHhhcc
Q psy17637 52 NSLTVKEYDVLLLHGDMDQSERNSVITKFKR--QECRILVATDVAAR-----GLDIPHIRTVVNYDLARDIDTHTHRIGR 124 (150)
Q Consensus 52 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~-----Gidi~~~~~vi~~~~~~~~~~~~q~~GR 124 (150)
..+......+..+.- ++.....+.++.++. ....+++.|..... .+......+ +.-|.+...+.+++.+
T Consensus 42 ~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~---l~kP~~~~~l~~~i~~ 117 (142)
T 2qxy_A 42 TFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDY---ILKPFRLDYLLERVKK 117 (142)
T ss_dssp HHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCE---EESSCCHHHHHHHHHH
T ss_pred HHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCccee---EeCCCCHHHHHHHHHH
Confidence 344445567777777 766666666666653 34667766643221 111111222 2357788888888777
Q ss_pred ccCC
Q psy17637 125 TGRA 128 (150)
Q Consensus 125 ~~R~ 128 (150)
+.+.
T Consensus 118 ~~~~ 121 (142)
T 2qxy_A 118 IISS 121 (142)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 6543
No 249
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=36.67 E-value=7.3 Score=29.40 Aligned_cols=38 Identities=8% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCc-eEEEecCCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEY-DVLLLHGDMD 69 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 69 (150)
.+..++++||.+-..+...+..|...|+ .+..+.|++.
T Consensus 423 ~~~~~iv~~C~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 461 (466)
T 3r2u_A 423 NKNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYK 461 (466)
T ss_dssp ---------------------------------------
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCEEEecChHH
Confidence 3567899999998888888888888887 5777778764
No 250
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=36.40 E-value=90 Score=22.52 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=24.9
Q ss_pred HHHHHhhccccCceEEEecCC------CCHHHHHHHHHHhh---cCCceEEEEcC
Q psy17637 47 AEELANSLTVKEYDVLLLHGD------MDQSERNSVITKFK---RQECRILVATD 92 (150)
Q Consensus 47 ~~~l~~~L~~~~~~~~~~~~~------~~~~~r~~~~~~f~---~g~~~vlv~T~ 92 (150)
.+.+.++|...|+.-.++.|. ++.+||.++++... .|...|++++.
T Consensus 54 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg 108 (343)
T 2v9d_A 54 TAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTG 108 (343)
T ss_dssp HHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC
T ss_pred HHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 445555555555554444443 56666666665544 34556665554
No 251
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=36.23 E-value=1.1e+02 Score=21.55 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=4.2
Q ss_pred HHHHHHHHHh
Q psy17637 20 AGHLVRNLEG 29 (150)
Q Consensus 20 ~~~ll~~l~~ 29 (150)
+..+++.+..
T Consensus 30 l~~lv~~li~ 39 (301)
T 3m5v_A 30 YARLIKRQIE 39 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 252
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=36.22 E-value=64 Score=22.90 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=38.2
Q ss_pred CCeeEEehh-----------hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc
Q psy17637 35 PPALMNLAM-----------QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR 82 (150)
Q Consensus 35 ~~~ivf~~~-----------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 82 (150)
+-+||+++. ...++.|...|...|+.+. ++..++.++-.+.++.|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 348999987 4568899999999999865 5667999999999999964
No 253
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=36.11 E-value=70 Score=19.14 Aligned_cols=53 Identities=8% Similarity=0.176 Sum_probs=37.3
Q ss_pred CCCCeeEEehh--hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCc
Q psy17637 33 EVPPALMNLAM--QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQEC 85 (150)
Q Consensus 33 ~~~~~ivf~~~--~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 85 (150)
+.-.++|.+.| ++-...+.+.-+..|..+..++...+...|.+..+.|++...
T Consensus 76 pqldvvvivttddkewikdfieeakergvevfvvynnkdddrrkeaqqefrsdgv 130 (162)
T 2l82_A 76 PQLDVVVIVTTDDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGV 130 (162)
T ss_dssp TTCCEEEEEECCCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSSC
T ss_pred CCCcEEEEEecCcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcCc
Confidence 44445555444 344444455556789999999999999999999999997643
No 254
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=35.86 E-value=62 Score=18.45 Aligned_cols=75 Identities=8% Similarity=0.201 Sum_probs=41.8
Q ss_pred hccccCceEEEecCCCCHHHHHHHHHHhhc----CCceEEEEcCCCcccC-Cc--cCCcEEEEecCCCChhHHHHhhccc
Q psy17637 53 SLTVKEYDVLLLHGDMDQSERNSVITKFKR----QECRILVATDVAARGL-DI--PHIRTVVNYDLARDIDTHTHRIGRT 125 (150)
Q Consensus 53 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~Gi-di--~~~~~vi~~~~~~~~~~~~q~~GR~ 125 (150)
.+....+.+..+.-.++.......++.++. ....+++.|....... .. .++.. .+.-|.+...+.+++.++
T Consensus 42 ~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~--~l~KP~~~~~L~~~i~~~ 119 (127)
T 3i42_A 42 AMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDF--YLEKPIDIASLEPILQSI 119 (127)
T ss_dssp HHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSE--EEESSCCHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHH--heeCCCCHHHHHHHHHHh
Confidence 334445667777766665555666666654 3456776665443322 10 11222 345788999999998887
Q ss_pred cCCC
Q psy17637 126 GRAG 129 (150)
Q Consensus 126 ~R~g 129 (150)
.+.+
T Consensus 120 ~~~~ 123 (127)
T 3i42_A 120 EGHH 123 (127)
T ss_dssp C---
T ss_pred hccC
Confidence 6554
No 255
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=35.59 E-value=86 Score=22.24 Aligned_cols=34 Identities=9% Similarity=0.049 Sum_probs=14.2
Q ss_pred ceEEEecCCCCHHHHHHHHHHhhc-CC-ceEEEEcC
Q psy17637 59 YDVLLLHGDMDQSERNSVITKFKR-QE-CRILVATD 92 (150)
Q Consensus 59 ~~~~~~~~~~~~~~r~~~~~~f~~-g~-~~vlv~T~ 92 (150)
.++..-.|+.+-.+-.+..+...+ |- --+++.++
T Consensus 77 vpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P 112 (311)
T 3h5d_A 77 VPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVP 112 (311)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECC
T ss_pred CcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCC
Confidence 334444444444443333334433 43 33455543
No 256
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=35.40 E-value=82 Score=22.42 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=5.1
Q ss_pred CCHHHHHHHHHH
Q psy17637 68 MDQSERNSVITK 79 (150)
Q Consensus 68 ~~~~~r~~~~~~ 79 (150)
|+.++|.++++.
T Consensus 72 Ls~~Er~~v~~~ 83 (315)
T 3si9_A 72 LTHEEHKRIIEL 83 (315)
T ss_dssp SCHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 344444444433
No 257
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=35.32 E-value=72 Score=19.02 Aligned_cols=83 Identities=8% Similarity=0.129 Sum_probs=40.3
Q ss_pred eEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc--CCceEEEEcCCCcc-----cCCccCCcEEEEec
Q psy17637 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR--QECRILVATDVAAR-----GLDIPHIRTVVNYD 110 (150)
Q Consensus 38 ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~-----Gidi~~~~~vi~~~ 110 (150)
++.+.+...+ ...+....+.+..+.-.++.......++.++. ....|++.|..... .+...++..++ .
T Consensus 34 v~~~~~~~~a---~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l--~ 108 (154)
T 2rjn_A 34 IITFTSPLDA---LEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFL--L 108 (154)
T ss_dssp EEEESCHHHH---HHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGGHHHHHHHHHTTCCSEEE--E
T ss_pred EEEeCCHHHH---HHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHhccchheee--e
Confidence 3344443333 33344445667777765554334445555443 35667766653321 11111133332 3
Q ss_pred CCCChhHHHHhhccc
Q psy17637 111 LARDIDTHTHRIGRT 125 (150)
Q Consensus 111 ~~~~~~~~~q~~GR~ 125 (150)
-|.+...+.+.+.++
T Consensus 109 kP~~~~~L~~~i~~~ 123 (154)
T 2rjn_A 109 KPWEDEDVFKVVEKG 123 (154)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 477777776655443
No 258
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=35.02 E-value=80 Score=19.49 Aligned_cols=18 Identities=6% Similarity=0.141 Sum_probs=13.0
Q ss_pred HHHHHhhcCCceEEEEcC
Q psy17637 75 SVITKFKRQECRILVATD 92 (150)
Q Consensus 75 ~~~~~f~~g~~~vlv~T~ 92 (150)
.+.+.+++|++..+|.|.
T Consensus 87 ~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 87 SIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp CHHHHHHTTSCCEEEECC
T ss_pred cHHHHHHCCCceEEEECC
Confidence 567777888777777664
No 259
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=34.84 E-value=17 Score=28.00 Aligned_cols=36 Identities=25% Similarity=0.167 Sum_probs=29.6
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDM 68 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 68 (150)
+..++++||.+-..+...+..|...|++ +..+.||+
T Consensus 62 ~~~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L~GG~ 98 (539)
T 1yt8_A 62 RDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGL 98 (539)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCCceEEeCCCH
Confidence 5678999998877888889999888884 77888764
No 260
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=34.35 E-value=81 Score=22.16 Aligned_cols=36 Identities=11% Similarity=0.017 Sum_probs=18.2
Q ss_pred ceEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcCCC
Q psy17637 59 YDVLLLHGDMDQSERNSVITKFK-RQECRILVATDVA 94 (150)
Q Consensus 59 ~~~~~~~~~~~~~~r~~~~~~f~-~g~~~vlv~T~~~ 94 (150)
.++..-.|+.+-.+-.+..+... .|---+++.++..
T Consensus 70 vpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 106 (297)
T 2rfg_A 70 VPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYY 106 (297)
T ss_dssp SCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTT
T ss_pred CeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 44555556555444444333333 3555566666543
No 261
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=34.07 E-value=75 Score=22.23 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=16.9
Q ss_pred ceEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcCC
Q psy17637 59 YDVLLLHGDMDQSERNSVITKFK-RQECRILVATDV 93 (150)
Q Consensus 59 ~~~~~~~~~~~~~~r~~~~~~f~-~g~~~vlv~T~~ 93 (150)
.++..-.|+.+-.+-.+..+... .|---+++.++.
T Consensus 70 ~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~ 105 (292)
T 2vc6_A 70 VPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPY 105 (292)
T ss_dssp SCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred CcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 44555555554444333333333 354456666654
No 262
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=33.99 E-value=84 Score=19.43 Aligned_cols=36 Identities=6% Similarity=-0.093 Sum_probs=26.0
Q ss_pred cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q psy17637 57 KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV 93 (150)
Q Consensus 57 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 93 (150)
.|+.+..+.... .+-+.++.+...+|++..+|-|..
T Consensus 48 ~Gl~v~~v~k~~-~eG~p~I~d~I~~geIdlVInt~~ 83 (134)
T 2xw6_A 48 TGLTVEKLLSGP-LGGDQQMGARVAEGRILAVIFFRD 83 (134)
T ss_dssp HCCCCEECSCGG-GTHHHHHHHHHHTTCEEEEEEECC
T ss_pred hCceEEEEEecC-CCCcchHHHHHHCCCccEEEEccC
Confidence 477776665431 135678999999999998888853
No 263
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=33.86 E-value=83 Score=22.38 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=10.8
Q ss_pred CCHHHHHHHHHHhh---cCCceEEEEc
Q psy17637 68 MDQSERNSVITKFK---RQECRILVAT 91 (150)
Q Consensus 68 ~~~~~r~~~~~~f~---~g~~~vlv~T 91 (150)
|+.+||.++++... .|...|++++
T Consensus 74 Ls~~Er~~v~~~~v~~~~grvpViaGv 100 (315)
T 3na8_A 74 LSDPEWDEVVDFTLKTVAHRVPTIVSV 100 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCBEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEec
Confidence 44555555444433 2344444444
No 264
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=33.85 E-value=71 Score=18.53 Aligned_cols=17 Identities=24% Similarity=0.133 Sum_probs=12.3
Q ss_pred CCC-ChhHHHHhhccccC
Q psy17637 111 LAR-DIDTHTHRIGRTGR 127 (150)
Q Consensus 111 ~~~-~~~~~~q~~GR~~R 127 (150)
-|. +...+.+++.++.+
T Consensus 115 kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 115 KPYRSIKALVARIEARLR 132 (137)
T ss_dssp SSCSCHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 577 88888887776554
No 265
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=33.74 E-value=77 Score=18.90 Aligned_cols=69 Identities=9% Similarity=0.129 Sum_probs=35.7
Q ss_pred cccCceEEEecCCCCHHHHHHHHHHhhc--CCceEEEEcCCCccc-----CCccCCcEEEEecCCCChhHHHHhhccc
Q psy17637 55 TVKEYDVLLLHGDMDQSERNSVITKFKR--QECRILVATDVAARG-----LDIPHIRTVVNYDLARDIDTHTHRIGRT 125 (150)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~G-----idi~~~~~vi~~~~~~~~~~~~q~~GR~ 125 (150)
....+.+..+.-.++.......++.++. ....|++.|...... +....+... +.-|.+...+.+++.++
T Consensus 55 ~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~--l~KP~~~~~l~~~i~~~ 130 (153)
T 3hv2_A 55 ASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRY--LSKPWDDQELLLALRQA 130 (153)
T ss_dssp HHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTTCCSEE--ECSSCCHHHHHHHHHHH
T ss_pred HcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCCCHHHHHHHHhCCCcceE--EeCCCCHHHHHHHHHHH
Confidence 3345566777665554444555555543 356777777543211 111112222 33577788777666544
No 266
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=33.70 E-value=1.1e+02 Score=20.87 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=46.0
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHH-HHHHHHHHhhc--CCceEEEEcC
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQS-ERNSVITKFKR--QECRILVATD 92 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~r~~~~~~f~~--g~~~vlv~T~ 92 (150)
.+...|.+ .+.++++...+.+.++++.+.+...+.++..+..+++.. +-+..++...+ |.+++||..-
T Consensus 24 aia~~la~---~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 24 AYAEGLAA---AGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp HHHHHHHH---TTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEECC
T ss_pred HHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECC
Confidence 44455544 355677766777788888888888888888888887544 33444444432 7789998863
No 267
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=33.63 E-value=1e+02 Score=20.37 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=29.0
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHH
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNS 75 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 75 (150)
...++-||++. ..+++.+.+...++...-+||.-+++.-..
T Consensus 52 ~~~~VgVfvn~--~~~~i~~~~~~~~ld~vQLHG~e~~~~~~~ 92 (203)
T 1v5x_A 52 FVVRVGVFRDQ--PPEEVLRLMEEARLQVAQLHGEEPPEWAEA 92 (203)
T ss_dssp SSEEEEEESSC--CHHHHHHHHHHTTCSEEEECSCCCHHHHHH
T ss_pred CCCEEEEEeCC--CHHHHHHHHHhhCCCEEEECCCCCHHHHHH
Confidence 35678888876 355566666666888999999988764443
No 268
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=33.47 E-value=47 Score=22.71 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=33.3
Q ss_pred CCCeeEEehhhhhHHHHHhhcccc----CceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVK----EYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
..++|+.++++.-++...+.+... ...+..++++.+... -..+...|+|+|.
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~ 212 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTW 212 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEch
Confidence 348999999988777666655443 345677777754321 1124567999994
No 269
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=32.83 E-value=68 Score=19.16 Aligned_cols=76 Identities=9% Similarity=0.042 Sum_probs=38.3
Q ss_pred HHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc--CCceEEEEcCCCcc-----cCCccCCcEEEEecCCCChhHHHH
Q psy17637 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR--QECRILVATDVAAR-----GLDIPHIRTVVNYDLARDIDTHTH 120 (150)
Q Consensus 48 ~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~-----Gidi~~~~~vi~~~~~~~~~~~~q 120 (150)
++....+......+..+.-.++.......++.++. ....|++.|..... .+.. ++..+ +.-|.+...+.+
T Consensus 37 ~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~-g~~~~--l~kP~~~~~L~~ 113 (155)
T 1qkk_A 37 TEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQD-GAYDF--IAKPFAADRLVQ 113 (155)
T ss_dssp HHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHT-TCCEE--EESSCCHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCChHHHHHHHhc-CCCeE--EeCCCCHHHHHH
Confidence 34445555555667777755544333444444442 34566666643321 1111 22222 235777777777
Q ss_pred hhcccc
Q psy17637 121 RIGRTG 126 (150)
Q Consensus 121 ~~GR~~ 126 (150)
++.++.
T Consensus 114 ~i~~~~ 119 (155)
T 1qkk_A 114 SARRAE 119 (155)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 270
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=32.81 E-value=93 Score=21.72 Aligned_cols=58 Identities=5% Similarity=0.201 Sum_probs=37.1
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceE-EEecCCCCHHHHHHHHHHhhcCCceEEEEcCC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDV-LLLHGDMDQSERNSVITKFKRQECRILVATDV 93 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 93 (150)
..=++||++...+.+.+.+.+ +.+++. ..+..+++.++..++.+..+..... +++.++
T Consensus 65 ~D~viI~tP~~~~~~~~~ea~-~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~-liGPNc 123 (288)
T 2nu8_A 65 ATASVIYVPAPFCKDSILEAI-DAGIKLIITITEGIPTLDMLTVKVKLDEAGVR-MIGPNT 123 (288)
T ss_dssp CCEEEECCCGGGHHHHHHHHH-HTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE-EECSSC
T ss_pred CCEEEEecCHHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEecCC
Confidence 345777888876666555554 567775 5677888887766777766654443 455553
No 271
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=32.58 E-value=31 Score=22.34 Aligned_cols=35 Identities=6% Similarity=-0.146 Sum_probs=26.5
Q ss_pred CCCCCeeEEehhhhh--HHHHHhhccccCceEEEecC
Q psy17637 32 QEVPPALMNLAMQLN--AEELANSLTVKEYDVLLLHG 66 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~--~~~l~~~L~~~~~~~~~~~~ 66 (150)
.+...+|||+++-.+ +-+++..++++|.++..+++
T Consensus 76 ~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 76 HAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp CTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 456778888887544 45777788888888888888
No 272
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=32.43 E-value=71 Score=22.94 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=25.5
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCce-EEEecCCC
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDM 68 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 68 (150)
.+.+++|+||.|--.+-.++-.|...|++ +..|.|..
T Consensus 273 d~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSW 310 (327)
T 3utn_X 273 DPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSW 310 (327)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHH
T ss_pred CCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcH
Confidence 45678999999865555555555666774 67777764
No 273
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=32.08 E-value=1.2e+02 Score=20.65 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=43.6
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHH-HHHHHHHHhhc--CCceEEEEc
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQS-ERNSVITKFKR--QECRILVAT 91 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~r~~~~~~f~~--g~~~vlv~T 91 (150)
..+...|.+. +.++++...+.+..+.+.+.+...+..+..+..+++.. .-...++.+.+ |.+++||..
T Consensus 46 ~aia~~la~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnn 116 (276)
T 3r1i_A 46 KKVALAYAEA---GAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCN 116 (276)
T ss_dssp HHHHHHHHHT---TCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred HHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3555555543 55788888877778888887776666677777776543 33444444332 577888775
No 274
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=32.00 E-value=77 Score=18.34 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=37.1
Q ss_pred hccccCceEEEecCCCC-----HHHHHHHHHHhhc--CCceEEEEcCCCcc-----cCCccCCcEEEEecCCCChhHHHH
Q psy17637 53 SLTVKEYDVLLLHGDMD-----QSERNSVITKFKR--QECRILVATDVAAR-----GLDIPHIRTVVNYDLARDIDTHTH 120 (150)
Q Consensus 53 ~L~~~~~~~~~~~~~~~-----~~~r~~~~~~f~~--g~~~vlv~T~~~~~-----Gidi~~~~~vi~~~~~~~~~~~~q 120 (150)
.+......+..+.-.++ .......++.++. ....|++.|..... .+.. ++..++ .-|.+...+.+
T Consensus 42 ~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~-g~~~~l--~kp~~~~~l~~ 118 (140)
T 2qr3_A 42 VLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKE-GASDFV--VKPWDNQKLLE 118 (140)
T ss_dssp HHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHT-TCCEEE--EESCCHHHHHH
T ss_pred HHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHHc-Cchhee--eCCCCHHHHHH
Confidence 33344566777776655 3334444444443 34566655533221 1111 222222 34778888888
Q ss_pred hhccccCC
Q psy17637 121 RIGRTGRA 128 (150)
Q Consensus 121 ~~GR~~R~ 128 (150)
++.++.+.
T Consensus 119 ~l~~~~~~ 126 (140)
T 2qr3_A 119 TLLNAASQ 126 (140)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 87766543
No 275
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=31.95 E-value=15 Score=26.94 Aligned_cols=37 Identities=8% Similarity=0.002 Sum_probs=29.5
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCce-EEEecCCCCH
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMDQ 70 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~ 70 (150)
..++++||.+-..+...+..|...|++ +..+.|++..
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~ 283 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSE 283 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHHH
Confidence 678999999977777777778778885 7888888643
No 276
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=31.70 E-value=1.2e+02 Score=20.61 Aligned_cols=62 Identities=8% Similarity=0.162 Sum_probs=42.5
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccC
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGL 98 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 98 (150)
...++|=+.+.+.+....+.+.+.+.+++.-+.++++++... ++.+.. +..++++.+ ++.|+
T Consensus 53 ~~DVvIDFT~P~a~~~~~~~~~~~g~~~ViGTTG~~~~~~~~-l~~~a~-~~~vv~apN-fSlGv 114 (228)
T 1vm6_A 53 SPDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHLQM-LRELSK-EVPVVQAYN-FSIGI 114 (228)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHHTCEEEECCCSCCHHHHHH-HHHHTT-TSEEEECSC-CCHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHH-HHHHHh-hCCEEEecc-ccHHH
Confidence 346788455677777777877888988888888898876644 455543 377777764 44454
No 277
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=31.69 E-value=1.1e+02 Score=20.34 Aligned_cols=49 Identities=4% Similarity=-0.029 Sum_probs=33.8
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccC--ceEEEecCCCCHHHHHHHHHHhhcCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKE--YDVLLLHGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~ 84 (150)
..+.+.|++++...++...+.|.+.+ -++..+. ...++.++.+.+.++-
T Consensus 25 rD~~iyVla~~qrd~~W~rQ~L~k~~~~e~~~Vi~---~~~e~~~i~~~L~~~~ 75 (197)
T 3gr0_A 25 RDKMLYVAAQNERDTLWARQVLARGDYDKNARVIN---ENEENKRISIWLDTYY 75 (197)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHHTCTTTEEEEC---HHHHHHHHHHHHHHHS
T ss_pred CCCcEEEEEccccHHHHHHHHHHhcCCCCCcEEee---hHHHHHHHHHHHHhcC
Confidence 35668999999999999988887654 2333333 4566666666666543
No 278
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=31.54 E-value=94 Score=22.06 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=22.7
Q ss_pred HHHHHhhccccCceEEEecCC------CCHHHHHHHHHHhh---cCCceEEEEcC
Q psy17637 47 AEELANSLTVKEYDVLLLHGD------MDQSERNSVITKFK---RQECRILVATD 92 (150)
Q Consensus 47 ~~~l~~~L~~~~~~~~~~~~~------~~~~~r~~~~~~f~---~g~~~vlv~T~ 92 (150)
.+.+.++|...|..-.++.|. ++.++|.++++... .|...|++++.
T Consensus 35 l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg 89 (314)
T 3d0c_A 35 LDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIG 89 (314)
T ss_dssp HHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCC
Confidence 334444444445444444432 56666665555443 24555555553
No 279
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=30.93 E-value=1.6e+02 Score=21.64 Aligned_cols=57 Identities=11% Similarity=0.126 Sum_probs=39.3
Q ss_pred CCeeEEeh--hhh---hHHHHHhhccccCceEEEecC---CCCHHHHHHHHHHhhcCCceEEEEc
Q psy17637 35 PPALMNLA--MQL---NAEELANSLTVKEYDVLLLHG---DMDQSERNSVITKFKRQECRILVAT 91 (150)
Q Consensus 35 ~~~ivf~~--~~~---~~~~l~~~L~~~~~~~~~~~~---~~~~~~r~~~~~~f~~g~~~vlv~T 91 (150)
.+++|.+. +.. ..+.+...|...++.+..+.+ ..+.+.-.+..+.+++....++|+-
T Consensus 44 ~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIav 108 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGV 108 (407)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 46777775 222 377888888877887776665 3455666777788887777777664
No 280
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=30.91 E-value=24 Score=21.30 Aligned_cols=71 Identities=13% Similarity=0.180 Sum_probs=44.4
Q ss_pred ccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCCc--cCCcEEEEecCCCChhHHHHhhccccC
Q psy17637 54 LTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDI--PHIRTVVNYDLARDIDTHTHRIGRTGR 127 (150)
Q Consensus 54 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi--~~~~~vi~~~~~~~~~~~~q~~GR~~R 127 (150)
+....+....+.=.||...-.++.+..+...++|++.|......... .... .+.-|.++.+...++.|..|
T Consensus 49 ~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lTa~~~~~~~~~~g~~~---yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 49 ARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFATGYGSKGLDTRYSNIP---LLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp HHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBCTTCTTSCCSSSCSCS---CBCSSSSHHHHHHHHSTTCS
T ss_pred HHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEecCccHHHHHhCCCCc---EEECCCCHHHHHHHHHHHHh
Confidence 33445677777777766666677777776667888777543332221 2222 24567888888888877654
No 281
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=30.80 E-value=79 Score=22.45 Aligned_cols=10 Identities=0% Similarity=0.072 Sum_probs=4.3
Q ss_pred CCceEEEEcC
Q psy17637 83 QECRILVATD 92 (150)
Q Consensus 83 g~~~vlv~T~ 92 (150)
|---+++.++
T Consensus 106 Gadavlv~~P 115 (316)
T 3e96_A 106 GADAVMIHMP 115 (316)
T ss_dssp TCSEEEECCC
T ss_pred CCCEEEEcCC
Confidence 4334444443
No 282
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=30.68 E-value=87 Score=18.58 Aligned_cols=45 Identities=11% Similarity=-0.008 Sum_probs=28.4
Q ss_pred CCCeeEEehh------hhhHHHHHhhccccCce---EEEecCCCCHHHHHHHHH
Q psy17637 34 VPPALMNLAM------QLNAEELANSLTVKEYD---VLLLHGDMDQSERNSVIT 78 (150)
Q Consensus 34 ~~~~ivf~~~------~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~r~~~~~ 78 (150)
..+++||..+ =..|..+...|...++. +..+.=...++.+..+.+
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~ 68 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKE 68 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHH
Confidence 3589999885 34677888888777776 444443444555554433
No 283
>3qhq_A CSN2, SAG0897 family crispr-associated protein; helicase, transferase; 2.00A {Streptococcus agalactiae} PDB: 3toc_A 3v7f_A
Probab=30.48 E-value=74 Score=21.67 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHhccCCCCCeeEEehh-----hhhHHHHHhhccccCceEEEecCC
Q psy17637 16 DKEFAGHLVRNLEGANQEVPPALMNLAM-----QLNAEELANSLTVKEYDVLLLHGD 67 (150)
Q Consensus 16 ~~~~~~~ll~~l~~~~~~~~~~ivf~~~-----~~~~~~l~~~L~~~~~~~~~~~~~ 67 (150)
..+++...++..... ...+++||+|- .++..++.+.....++++.++-..
T Consensus 145 ~~eki~~~lki~~el--~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~i~vLlIE~~ 199 (229)
T 3qhq_A 145 IFEKCFEIIQVYHYL--TKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPR 199 (229)
T ss_dssp HHHHHHHHHHHHHHC--TTCCEEEEESCGGGCCHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred HHHHHHHHHHHHHHh--cCCCEEEEEChHHhCCHHHHHHHHHHHHHhCCeEEEEecc
Confidence 344555666666665 77789999975 456677777776667766666654
No 284
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=29.89 E-value=1.7e+02 Score=21.64 Aligned_cols=56 Identities=9% Similarity=0.205 Sum_probs=33.2
Q ss_pred hhhhhHHHHHhhccccCceEEEec-CCCCHHHHHHHHHHhhcCCceEEEEcCCCcccC
Q psy17637 42 AMQLNAEELANSLTVKEYDVLLLH-GDMDQSERNSVITKFKRQECRILVATDVAARGL 98 (150)
Q Consensus 42 ~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 98 (150)
+|.+.++.+++.|.+.|+.+..+. -..+......++..+.+.+ -++++++...-++
T Consensus 278 nTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~-~ivlGspT~~~~~ 334 (410)
T 4dik_A 278 FVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSE-ALIFGVSTYEAEI 334 (410)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCS-EEEEEECCTTSSS
T ss_pred hHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCC-eEEEEeCCcCCcC
Confidence 667888899999988888765432 1222223345555554432 5677776654433
No 285
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=29.51 E-value=30 Score=16.93 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=16.2
Q ss_pred ecCCCCHHHHHHHHHHhhc
Q psy17637 64 LHGDMDQSERNSVITKFKR 82 (150)
Q Consensus 64 ~~~~~~~~~r~~~~~~f~~ 82 (150)
.||+|+-.+.++..+.|-.
T Consensus 4 ~hG~MD~~~hE~Ty~gFi~ 22 (43)
T 1qle_D 4 KHGEMDIRHQQATFAGFIK 22 (43)
T ss_dssp CTTCSCCHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHH
Confidence 5899999999999988853
No 286
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=29.42 E-value=1.2e+02 Score=20.03 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=27.6
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHH
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERN 74 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 74 (150)
...++-||++. ..+++.+.+...++...-+||.-+++.-.
T Consensus 53 ~~~~VgVfvn~--~~~~i~~~~~~~~ld~vQLHG~e~~~~~~ 92 (205)
T 1nsj_A 53 FVFRVGVFVNE--EPEKILDVASYVQLNAVQLHGEEPIELCR 92 (205)
T ss_dssp SSEEEEEESSC--CHHHHHHHHHHHTCSEEEECSCCCHHHHH
T ss_pred CCCEEEEEeCC--CHHHHHHHHHhhCCCEEEECCCCCHHHHH
Confidence 35678888876 34555555555678899999988775433
No 287
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=29.17 E-value=87 Score=18.11 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=47.2
Q ss_pred CCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc----CCceEEEEcCCCccc-----CCccCCc
Q psy17637 34 VPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR----QECRILVATDVAARG-----LDIPHIR 104 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~G-----idi~~~~ 104 (150)
+...+..+.+.+.+.. .+......+..+.-.++...-...++.++. ....|++.|...... +.. ++.
T Consensus 33 ~~~~v~~~~~~~~a~~---~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~-g~~ 108 (143)
T 3cnb_A 33 PYAKIKIAYNPFDAGD---LLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVAL-GAE 108 (143)
T ss_dssp TTCEEEEECSHHHHHH---HHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHT-TCS
T ss_pred CccEEEEECCHHHHHH---HHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhc-CCc
Confidence 3343455555443333 233344567777766655455566666665 345677666433221 111 222
Q ss_pred EEEEecCCCChhHHHHhhccccCC
Q psy17637 105 TVVNYDLARDIDTHTHRIGRTGRA 128 (150)
Q Consensus 105 ~vi~~~~~~~~~~~~q~~GR~~R~ 128 (150)
.+ +.-|.+...+.+++.++.+.
T Consensus 109 ~~--l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 109 TC--FGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp EE--EESSCCHHHHHHHHHHHHHT
T ss_pred EE--EeCCCCHHHHHHHHHHHHHh
Confidence 22 24578888888877765543
No 288
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=29.00 E-value=1.2e+02 Score=21.20 Aligned_cols=56 Identities=11% Similarity=0.174 Sum_probs=35.5
Q ss_pred CCeeEEehhhhhHHHHHhhccccCce-EEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKEYD-VLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.=+++|++..... .+.+.+.+.+++ +..+..+++..+..++.+..+..... +++.+
T Consensus 66 Dv~Ii~vp~~~~~-~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~-vigPN 122 (288)
T 1oi7_A 66 DASIIFVPAPAAA-DAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSR-LIGGN 122 (288)
T ss_dssp SEEEECCCHHHHH-HHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE-EEESS
T ss_pred CEEEEecCHHHHH-HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEeCC
Confidence 3466677775544 444445567777 66778889887777777766654443 45544
No 289
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=29.00 E-value=1.6e+02 Score=21.58 Aligned_cols=61 Identities=8% Similarity=-0.122 Sum_probs=39.2
Q ss_pred CCCCCeeEEehh-------hhhHHHHHhhccccCceEEEecC--------CCCHHHH-HHHHHHhhcCCceEEEEcC
Q psy17637 32 QEVPPALMNLAM-------QLNAEELANSLTVKEYDVLLLHG--------DMDQSER-NSVITKFKRQECRILVATD 92 (150)
Q Consensus 32 ~~~~~~ivf~~~-------~~~~~~l~~~L~~~~~~~~~~~~--------~~~~~~r-~~~~~~f~~g~~~vlv~T~ 92 (150)
.++.++-|.+++ .+..+...+.|+..|+++..-.. .-++++| ..+.+.|.+.+++.++|+.
T Consensus 41 k~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 41 AVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 345667777765 24456666777777887654311 1245555 5666788888999888874
No 290
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=28.86 E-value=1.3e+02 Score=21.59 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=34.6
Q ss_pred CCCCeeEEehhh-------hhHHHHHhhccccCceEEEe---------cCCCCHHHH-HHHHHHhhcCCceEEEEcC
Q psy17637 33 EVPPALMNLAMQ-------LNAEELANSLTVKEYDVLLL---------HGDMDQSER-NSVITKFKRQECRILVATD 92 (150)
Q Consensus 33 ~~~~~ivf~~~~-------~~~~~l~~~L~~~~~~~~~~---------~~~~~~~~r-~~~~~~f~~g~~~vlv~T~ 92 (150)
++.++-|.+++- +..+...+.|+..|+++..- .++ ++++| ....+.|.+.+++.++|+.
T Consensus 12 ~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 12 YGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSG-SIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp TTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSS-CHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCC-CHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 344555555442 34555556666667765532 122 34455 5666778888888888774
No 291
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=28.69 E-value=91 Score=18.16 Aligned_cols=72 Identities=7% Similarity=0.006 Sum_probs=36.2
Q ss_pred hccccCceEEEecCCCCHHHHHHHHHHhhc--CCceEEEEcCCCcccCCc--cCCcEEEEecCCCChhHHHHhhcccc
Q psy17637 53 SLTVKEYDVLLLHGDMDQSERNSVITKFKR--QECRILVATDVAARGLDI--PHIRTVVNYDLARDIDTHTHRIGRTG 126 (150)
Q Consensus 53 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidi--~~~~~vi~~~~~~~~~~~~q~~GR~~ 126 (150)
.+......+..+.-.++.......++.++. ....|++.|.....-... .++..+ +.-|.+...+.+.+.++.
T Consensus 50 ~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~g~~~~--l~KP~~~~~l~~~i~~~~ 125 (143)
T 2qv0_A 50 FLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDY--ILKPYQESRIINMLQKLT 125 (143)
T ss_dssp HHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEEEESCCTTHHHHHHTTCSEE--EESSCCHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEEEeCCHHHHHHHHhCCcceE--EeCCCCHHHHHHHHHHHH
Confidence 333344667777766655445556666654 233466555432111100 122222 235777888777665543
No 292
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=28.59 E-value=68 Score=18.68 Aligned_cols=78 Identities=5% Similarity=0.060 Sum_probs=45.8
Q ss_pred HHHHHhhccccCceEEEecCCCCH--HHHHHHHHHhhcC--CceEEEEcCCCcc-----cCCccCCcEEEEecCCCChhH
Q psy17637 47 AEELANSLTVKEYDVLLLHGDMDQ--SERNSVITKFKRQ--ECRILVATDVAAR-----GLDIPHIRTVVNYDLARDIDT 117 (150)
Q Consensus 47 ~~~l~~~L~~~~~~~~~~~~~~~~--~~r~~~~~~f~~g--~~~vlv~T~~~~~-----Gidi~~~~~vi~~~~~~~~~~ 117 (150)
.++....+....+.+..+.-.++. ......++.++.. ...|++.|..... .+.. ++.. .+.-|.+...
T Consensus 39 ~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~-ga~~--~l~KP~~~~~ 115 (136)
T 3kto_A 39 AESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSSDIPTAVRAMRA-SAAD--FIEKPFIEHV 115 (136)
T ss_dssp HHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHHHHHHT-TCSE--EEESSBCHHH
T ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHc-ChHH--heeCCCCHHH
Confidence 344555666666778888877776 6667777777653 4567766643322 1111 2222 2335778888
Q ss_pred HHHhhccccC
Q psy17637 118 HTHRIGRTGR 127 (150)
Q Consensus 118 ~~q~~GR~~R 127 (150)
+..++.++.+
T Consensus 116 l~~~i~~~~~ 125 (136)
T 3kto_A 116 LVHDVQQIIN 125 (136)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8877766543
No 293
>1k8v_A Neuropeptide F; moniezia expansa, NPF, unknown function; NMR {Synthetic} SCOP: j.6.1.1
Probab=28.42 E-value=30 Score=16.66 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=8.6
Q ss_pred ChhHHHHhhccccCC
Q psy17637 114 DIDTHTHRIGRTGRA 128 (150)
Q Consensus 114 ~~~~~~q~~GR~~R~ 128 (150)
.+.+|.+.+|| .|.
T Consensus 26 ~LneYyai~GR-PRF 39 (40)
T 1k8v_A 26 QINEYFAIIGR-PRF 39 (40)
T ss_dssp HHHHHHHHHHC-SCC
T ss_pred HHHHHHHHhcC-cCC
Confidence 35566677777 443
No 294
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=28.41 E-value=1.1e+02 Score=21.75 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=38.8
Q ss_pred CCCeeEEehh-------------hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC
Q psy17637 34 VPPALMNLAM-------------QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ 83 (150)
Q Consensus 34 ~~~~ivf~~~-------------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 83 (150)
.+-+|||.+. ..-++.|...|...|+.+. ++..++..+-.+.++.|...
T Consensus 60 rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 60 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp CCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHSS
T ss_pred cCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHHh
Confidence 4558888764 5568899999999999864 55679999999999999754
No 295
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=28.31 E-value=74 Score=17.88 Aligned_cols=18 Identities=22% Similarity=0.115 Sum_probs=11.6
Q ss_pred cCCCChhHHHHhhccccC
Q psy17637 110 DLARDIDTHTHRIGRTGR 127 (150)
Q Consensus 110 ~~~~~~~~~~q~~GR~~R 127 (150)
.-|.+...+.+++.++.+
T Consensus 107 ~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 107 AKPVDADQLVERAGALIG 124 (127)
T ss_dssp ESSCCHHHHHHHHHHHHC
T ss_pred eCCCCHHHHHHHHHHHHc
Confidence 356777777777665543
No 296
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=27.93 E-value=59 Score=22.47 Aligned_cols=71 Identities=11% Similarity=0.073 Sum_probs=35.6
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEE--EecCC-CCHHHHHHHHHHhhc-CCceEEEEcC
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVL--LLHGD-MDQSERNSVITKFKR-QECRILVATD 92 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~--~~~~~-~~~~~r~~~~~~f~~-g~~~vlv~T~ 92 (150)
+.|++.+.....++.++++++.. ...+.|.+.|...|..+. .+|.. ..+.....+.+.+.. +.+.+++-|+
T Consensus 144 e~L~~~l~~~~~~g~~vLi~rg~-~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS 218 (286)
T 1jr2_A 144 EKLAEYICSRESSALPLLFPCGN-LKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFS 218 (286)
T ss_dssp HHHHHHHHTSCCCSSCEEEEESC-GGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESS
T ss_pred HHHHHHHHhcccCCCeEEEECCh-hhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEC
Confidence 46777776543345666665544 345567777777665432 22221 112122233344544 5566565554
No 297
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=27.92 E-value=19 Score=14.15 Aligned_cols=10 Identities=0% Similarity=-0.027 Sum_probs=6.8
Q ss_pred CeeEEehhhh
Q psy17637 36 PALMNLAMQL 45 (150)
Q Consensus 36 ~~ivf~~~~~ 45 (150)
--||||+.+.
T Consensus 6 vpiiycnrrt 15 (21)
T 8tfv_A 6 VPIIYCNRRT 15 (26)
T ss_dssp CCCEEEEGGG
T ss_pred ccEEEEcCcc
Confidence 3578998753
No 298
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1
Probab=27.91 E-value=30 Score=21.25 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=22.8
Q ss_pred CCCCeeEEehhhhhH----------HHHHhhccccCceEEEecCCCC
Q psy17637 33 EVPPALMNLAMQLNA----------EELANSLTVKEYDVLLLHGDMD 69 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~----------~~l~~~L~~~~~~~~~~~~~~~ 69 (150)
...++||||.+-... ..+...|...|+++..+.||+.
T Consensus 91 ~~~~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~v~~L~GG~~ 137 (154)
T 1hzm_A 91 GTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEGGFS 137 (154)
T ss_dssp TSSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCCCEECCCCHH
T ss_pred CCCeEEEEeCCCCccccccccchHHHHHHHHHHHCCCceEEEcChHH
Confidence 456899999764321 2233444334777888899963
No 299
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*
Probab=27.09 E-value=19 Score=23.00 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=22.6
Q ss_pred CCeeEEehhh-----hhHHHHHhhccccC---ceEEEecCCCC
Q psy17637 35 PPALMNLAMQ-----LNAEELANSLTVKE---YDVLLLHGDMD 69 (150)
Q Consensus 35 ~~~ivf~~~~-----~~~~~l~~~L~~~~---~~~~~~~~~~~ 69 (150)
.++|+||.+- ..+..+...|...| ..+..+.||+.
T Consensus 105 ~~IVvyC~sG~~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~ 147 (169)
T 3f4a_A 105 LNVIFHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFS 147 (169)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHTCCHHHHTTEEEEEETTHHH
T ss_pred CeEEEEeCCCCCcHHHHHHHHHHHHHHcCCCCCCEEEECCCHH
Confidence 5789999752 23445555555444 57888999963
No 300
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=27.07 E-value=1.6e+02 Score=20.98 Aligned_cols=47 Identities=13% Similarity=0.046 Sum_probs=26.6
Q ss_pred hHHHHHhhccccCceEEEe---------cCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 46 NAEELANSLTVKEYDVLLL---------HGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 46 ~~~~l~~~L~~~~~~~~~~---------~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
..+...+.|+..|+++..- .++.+++-.....+.|.+.+++.++|+.
T Consensus 33 ~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 88 (311)
T 1zl0_A 33 VLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLR 88 (311)
T ss_dssp HHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESC
T ss_pred HHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEcc
Confidence 3445555565566655431 2333333335566777888888777774
No 301
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=27.04 E-value=67 Score=18.89 Aligned_cols=67 Identities=12% Similarity=0.173 Sum_probs=36.1
Q ss_pred cCceEEEecCCCCHHHHHHHHHHhhc----CCceEEEEcCCCccc-----CCccCCcEEEEecCCCChhHHHHhhcccc
Q psy17637 57 KEYDVLLLHGDMDQSERNSVITKFKR----QECRILVATDVAARG-----LDIPHIRTVVNYDLARDIDTHTHRIGRTG 126 (150)
Q Consensus 57 ~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~G-----idi~~~~~vi~~~~~~~~~~~~q~~GR~~ 126 (150)
....+.++.-.++.....+.++.++. ....|++.|...... +.. ++..++ .-|.+...+.+++.++.
T Consensus 51 ~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~-g~~~~l--~kp~~~~~L~~~i~~~~ 126 (147)
T 2zay_A 51 THPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDM-GFIDFI--AKPVNAIRLSARIKRVL 126 (147)
T ss_dssp HCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHH-TCSEEE--ESSCCHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhC-CCCEEE--eCCCCHHHHHHHHHHHH
Confidence 34567777766654445566666664 345677666433211 111 222222 35777888777665543
No 302
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=27.04 E-value=91 Score=17.62 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=38.7
Q ss_pred hhccccCceEEEecCCCCHHHHHHHHHHhhcC-CceEEEEcCCCcc-----cCCccCCcEEEEecCCCChhHHHHhhccc
Q psy17637 52 NSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ-ECRILVATDVAAR-----GLDIPHIRTVVNYDLARDIDTHTHRIGRT 125 (150)
Q Consensus 52 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~~-----Gidi~~~~~vi~~~~~~~~~~~~q~~GR~ 125 (150)
+.+....+.+..+.-.|+.....+.++.++.. ...+++.|..... .+......++ .-|.+...+..++-++
T Consensus 40 ~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~~~~~~~~~~~ga~~~l---~KP~~~~~l~~~i~~~ 116 (120)
T 3f6p_A 40 EMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYV---TKPFSTRELLARVKAN 116 (120)
T ss_dssp HHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESSCHHHHHHHHHTTCCEEE---EESCCHHHHHHHHHHH
T ss_pred HHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCChHHHHHHHhCCcceeE---cCCCCHHHHHHHHHHH
Confidence 33444456778888778776777777777642 3455555532211 1122222222 2466777777666544
Q ss_pred c
Q psy17637 126 G 126 (150)
Q Consensus 126 ~ 126 (150)
.
T Consensus 117 l 117 (120)
T 3f6p_A 117 L 117 (120)
T ss_dssp H
T ss_pred H
Confidence 3
No 303
>2lta_A De novo designed protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=33.04 E-value=13 Score=20.88 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=16.0
Q ss_pred hhhhHHHHHhhccccCceEEEecCCC
Q psy17637 43 MQLNAEELANSLTVKEYDVLLLHGDM 68 (150)
Q Consensus 43 ~~~~~~~l~~~L~~~~~~~~~~~~~~ 68 (150)
.....++++..++..|+.+..+-...
T Consensus 12 ddttleelarkikdeglevyillkdk 37 (110)
T 2lta_A 12 DDTTLEELARKIKDEGLEVYILLKDK 37 (110)
Confidence 34456777777777776666555443
No 304
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=27.01 E-value=74 Score=16.61 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=23.0
Q ss_pred eeEEehhh-hhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEE
Q psy17637 37 ALMNLAMQ-LNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRIL 88 (150)
Q Consensus 37 ~ivf~~~~-~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 88 (150)
+++|.... ..|..+...|...++.+..+.-...+..+....+....+.++++
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l 55 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQI 55 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEE
T ss_pred EEEEECCCChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 44554332 34555555555555554444433333333334344433444444
No 305
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=26.93 E-value=1.5e+02 Score=19.95 Aligned_cols=69 Identities=10% Similarity=0.109 Sum_probs=45.7
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHH-HHHHHHHhh--cCCceEEEEcC
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE-RNSVITKFK--RQECRILVATD 92 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~-r~~~~~~f~--~g~~~vlv~T~ 92 (150)
..+...|.+. +.++++...+.+..+.+...+...+..+..+..+++..+ -...++... -|.+++||..-
T Consensus 25 ~aia~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 25 TTLARRCAEQ---GADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNA 96 (264)
T ss_dssp HHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred HHHHHHHHHC---cCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence 3566666543 557888888888888888888777777778888875443 333444332 26778888763
No 306
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=26.78 E-value=70 Score=25.10 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=26.7
Q ss_pred CCCCCeeEEehhhhhHHHHHhhccccCceEEEe
Q psy17637 32 QEVPPALMNLAMQLNAEELANSLTVKEYDVLLL 64 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~ 64 (150)
..+.++||.++|...++.+.+.|...+.++..+
T Consensus 231 ~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRl 263 (646)
T 4b3f_X 231 KQGLKVLCCAPSNIAVDNLVERLALCKQRILRL 263 (646)
T ss_dssp HTTCCEEEEESSHHHHHHHHHHHHHTTCCEEEC
T ss_pred hCCCeEEEEcCchHHHHHHHHHHHhcCCceEEe
Confidence 456799999999999999999997766655443
No 307
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=26.68 E-value=1e+02 Score=25.95 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=28.5
Q ss_pred CCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMD 69 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 69 (150)
.+.++|+.++++.-+...+..|......+..++|+.+
T Consensus 128 ~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~ 164 (1010)
T 2xgj_A 128 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT 164 (1010)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCE
T ss_pred cCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCc
Confidence 4578999999998888777777654447788888864
No 308
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=26.67 E-value=1.2e+02 Score=19.05 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=44.0
Q ss_pred EEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhh---HHHHHhhccccCceEEEecCCCCHHHHHHHHHHhh
Q psy17637 9 YTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLN---AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81 (150)
Q Consensus 9 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 81 (150)
|+....+.-..+..++-.+......++|.+|.+...+. +.-+.+.|+ ..++++.+..--=-+.|+..++...
T Consensus 28 ~ILitdkKIs~i~~llP~LE~v~~~~~pLlIIAedvegeaLatLvvNklr-g~l~v~AVKAPgfGd~Rk~~L~DiA 102 (145)
T 1srv_A 28 FILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLR-GTLSVAAVKAPGFGDRRKEMLKDIA 102 (145)
T ss_dssp EEEEESSEECCHHHHHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHT-TSCCEEEEECCSSHHHHHHHHHHHH
T ss_pred EEEEecccccCHHHHHHHHHHHHHHCCCEEEEecccchhhhhhhhhhhhc-ccceEEEEeCCCcchhhHHHHHHHH
Confidence 44455554444556777776655567889999877542 223334433 3567777776544667777777765
No 309
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=26.53 E-value=1.7e+02 Score=20.87 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=23.7
Q ss_pred HHHHHhhccccCceEEEec---------CCCCHHHH-HHHHHHhhcCCceEEEEc
Q psy17637 47 AEELANSLTVKEYDVLLLH---------GDMDQSER-NSVITKFKRQECRILVAT 91 (150)
Q Consensus 47 ~~~l~~~L~~~~~~~~~~~---------~~~~~~~r-~~~~~~f~~g~~~vlv~T 91 (150)
.+...+.|+..|+++..-. ++ ++++| ....+.|.+.+++.++|+
T Consensus 32 ~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-td~~Ra~dL~~a~~Dp~i~aI~~~ 85 (327)
T 4h1h_A 32 VEIAVNRLTDMGFKVTFGEHVAEMDCMMSS-SIRSRVADIHEAFNDSSVKAILTV 85 (327)
T ss_dssp HHHHHHHHHHTTCEEEECTTTTCCCTTSSC-CHHHHHHHHHHHHHCTTEEEEEES
T ss_pred HHHHHHHHHhCCCEEEECcchhhccCcccC-CHHHHHHHHHHHhhCCCCCEEEEc
Confidence 4444455555555543321 12 34444 455566777777777776
No 310
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=26.51 E-value=1.8e+02 Score=20.90 Aligned_cols=48 Identities=8% Similarity=0.202 Sum_probs=21.6
Q ss_pred CCeeEEehhh---hhHHHHHhhccccCceE--EEecCCCCHHHHHHHHHHhhc
Q psy17637 35 PPALMNLAMQ---LNAEELANSLTVKEYDV--LLLHGDMDQSERNSVITKFKR 82 (150)
Q Consensus 35 ~~~ivf~~~~---~~~~~l~~~L~~~~~~~--~~~~~~~~~~~r~~~~~~f~~ 82 (150)
.+++|.+... ...+.+...|...++.+ ..+.|..+.+.-.+..+.+++
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~ 84 (370)
T 1jq5_A 32 NKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARK 84 (370)
T ss_dssp SEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHH
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHh
Confidence 3455555321 23445555555445443 234444444444444444443
No 311
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=26.23 E-value=90 Score=24.95 Aligned_cols=64 Identities=9% Similarity=-0.069 Sum_probs=42.4
Q ss_pred CCCeeEEehhhhhHHHHHhhccc-cCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCC--Cc-ccCCccCCcEEEE
Q psy17637 34 VPPALMNLAMQLNAEELANSLTV-KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV--AA-RGLDIPHIRTVVN 108 (150)
Q Consensus 34 ~~~~ivf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~--~~-~Gidi~~~~~vi~ 108 (150)
+.+++|.+++++-+..+++.+.. .+..+....|+.. ..+..+|+|+|.- +. ..++..++++||.
T Consensus 257 g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVl 324 (666)
T 3o8b_A 257 GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSGGAYDIIIC 324 (666)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEE
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCcccCcccEEEE
Confidence 45899999999988888776643 2555666677643 3556789999842 22 2345556777664
No 312
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=26.19 E-value=1e+02 Score=17.92 Aligned_cols=71 Identities=8% Similarity=0.011 Sum_probs=39.7
Q ss_pred ccccCceEEEecCCCCHHHHHHHHHHhhc----CCceEEEEcCCCccc-----CCccCCcEEEEecCCCChhHHHHhhcc
Q psy17637 54 LTVKEYDVLLLHGDMDQSERNSVITKFKR----QECRILVATDVAARG-----LDIPHIRTVVNYDLARDIDTHTHRIGR 124 (150)
Q Consensus 54 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~G-----idi~~~~~vi~~~~~~~~~~~~q~~GR 124 (150)
+......+..+.-.|+.....++++.++. ....|++.|...... +......+ +.-|.+...+.+++-+
T Consensus 44 ~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~---l~KP~~~~~L~~~i~~ 120 (136)
T 3t6k_A 44 IYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDY---LAKPFEPQELVYRVKN 120 (136)
T ss_dssp HHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEE---EETTCCHHHHHHHHHH
T ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceE---EeCCCCHHHHHHHHHH
Confidence 33345567777766665555666666653 345677666533221 12222222 3368888888887766
Q ss_pred ccC
Q psy17637 125 TGR 127 (150)
Q Consensus 125 ~~R 127 (150)
+.+
T Consensus 121 ~l~ 123 (136)
T 3t6k_A 121 ILA 123 (136)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 313
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=26.17 E-value=84 Score=24.84 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=37.4
Q ss_pred CCCCeeEEehhhhhHHHHHhhcc---ccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcC
Q psy17637 33 EVPPALMNLAMQLNAEELANSLT---VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATD 92 (150)
Q Consensus 33 ~~~~~ivf~~~~~~~~~l~~~L~---~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 92 (150)
.+.++++.++++.-+...+..+. ..+.++..++|+....++ .+ +...|+|+|+
T Consensus 74 ~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~--~~~~Iiv~Tp 129 (715)
T 2va8_A 74 NGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL--KNYDIIITTY 129 (715)
T ss_dssp SCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG--GGCSEEEECH
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc--CCCCEEEEcH
Confidence 35789999999988877777663 347889999998754332 11 2467888885
No 314
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=25.73 E-value=1.5e+02 Score=19.76 Aligned_cols=69 Identities=12% Similarity=0.139 Sum_probs=45.8
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHH-HHHHHHHHhhc--CCceEEEEcC
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQS-ERNSVITKFKR--QECRILVATD 92 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~r~~~~~~f~~--g~~~vlv~T~ 92 (150)
..+...+.+ .+.++++...+.+..+.+...+...+..+..+..+++.. .-...++...+ |.+++||..-
T Consensus 20 ~aia~~l~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 91 (257)
T 3imf_A 20 KGMATRFAK---EGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNA 91 (257)
T ss_dssp HHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 355566654 355788888888888888888877666777788887543 33444444332 6788888763
No 315
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=25.52 E-value=23 Score=20.32 Aligned_cols=20 Identities=15% Similarity=0.415 Sum_probs=17.1
Q ss_pred cCCCCHHHHHHHHHHhhcCC
Q psy17637 65 HGDMDQSERNSVITKFKRQE 84 (150)
Q Consensus 65 ~~~~~~~~r~~~~~~f~~g~ 84 (150)
.+.+++++|+++++.|..|.
T Consensus 58 ~~~lt~~ek~elieeFn~G~ 77 (90)
T 1jr5_A 58 VSELTQEDKKTLIDEFNEGF 77 (90)
T ss_dssp HHTCCHHHHHHHHTTSSSSS
T ss_pred HHHCCHHHHHHHHHHHhccc
Confidence 34689999999999999875
No 316
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=25.46 E-value=1.1e+02 Score=18.01 Aligned_cols=110 Identities=7% Similarity=0.076 Sum_probs=51.5
Q ss_pred CeeEEEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhc---
Q psy17637 6 GVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKR--- 82 (150)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--- 82 (150)
++...+.+.... ....+..+... .+..+..+ .+.+ +..+.+....+.+..+.-.|+.....+.++.++.
T Consensus 14 ~~~iLivdd~~~--~~~~l~~~L~~--~g~~v~~~-~~~~---~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~ 85 (143)
T 3m6m_D 14 SMRMLVADDHEA--NRMVLQRLLEK--AGHKVLCV-NGAE---QVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQA 85 (143)
T ss_dssp -CEEEEECSSHH--HHHHHHHHHHC----CEEEEE-SSHH---HHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHH
T ss_pred cceEEEEeCCHH--HHHHHHHHHHH--cCCeEEEe-CCHH---HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchh
Confidence 344454544433 23444444443 23344443 3333 2233333445667777766655445555555541
Q ss_pred ---CCceEEEEcCCCcc-----cCCccCCcEEEEecCCCChhHHHHhhcccc
Q psy17637 83 ---QECRILVATDVAAR-----GLDIPHIRTVVNYDLARDIDTHTHRIGRTG 126 (150)
Q Consensus 83 ---g~~~vlv~T~~~~~-----Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~ 126 (150)
....+++.|..... .... ++.. .+.-|.+...+.+.+.+..
T Consensus 86 ~~~~~~pii~~s~~~~~~~~~~~~~~-Ga~~--~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 86 SGMRYTPVVVLSADVTPEAIRACEQA-GARA--FLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp TTCCCCCEEEEESCCCHHHHHHHHHT-TCSE--EEESSCCHHHHHHHHHHHC
T ss_pred ccCCCCeEEEEeCCCCHHHHHHHHHc-Chhh--eeeCCCCHHHHHHHHHHHH
Confidence 23456666543221 1111 1221 2346778888887776654
No 317
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=25.42 E-value=1.5e+02 Score=19.72 Aligned_cols=69 Identities=3% Similarity=-0.002 Sum_probs=46.3
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHH-HHHHHHHhhc-CCceEEEEcC
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE-RNSVITKFKR-QECRILVATD 92 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~-r~~~~~~f~~-g~~~vlv~T~ 92 (150)
..+...+... +.++++...+.+..+.+...+...+..+..+..+++..+ -....+...+ |.+++||..-
T Consensus 21 ~aia~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id~lv~nA 91 (252)
T 3h7a_A 21 AEIAKKFAAE---GFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLEVTIFNV 91 (252)
T ss_dssp HHHHHHHHHT---TCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred HHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCceEEEECC
Confidence 3566666553 557888888888888888888777777888888875443 3334443322 6788888763
No 318
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=25.42 E-value=1.3e+02 Score=20.89 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=37.8
Q ss_pred CCeeEEehh-------------hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC
Q psy17637 35 PPALMNLAM-------------QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ 83 (150)
Q Consensus 35 ~~~ivf~~~-------------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 83 (150)
+-+||+.+. ...++.|.+.|...|+.+. ++..++.++-.+.++.|...
T Consensus 33 g~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 33 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCcCHHHHHHHHHHHHHh
Confidence 447887764 5568899999999999864 56679999999999999754
No 319
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=25.27 E-value=77 Score=21.37 Aligned_cols=62 Identities=10% Similarity=0.206 Sum_probs=35.9
Q ss_pred CCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHH--------HHHHHHHHhhcCCc-eEEEEcCCCccc
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQS--------ERNSVITKFKRQEC-RILVATDVAARG 97 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~--------~r~~~~~~f~~g~~-~vlv~T~~~~~G 97 (150)
...|..+.+.+.+-.+-+. ....-...+++|.+++- .-.+.+++..++.+ .|++||+.--+|
T Consensus 93 ~~~iCVVE~~~Dv~aiE~t-~~y~G~YhVLgG~iSPldGigP~~L~i~~L~~Ri~~~~v~EVIlAtnpTvEG 163 (212)
T 3vdp_A 93 HSTICVVSHPMDVVAMEKV-KEYKGVYHVLHGVISPIEGVGPEDIRIKELLERVRDGSVKEVILATNPDIEG 163 (212)
T ss_dssp EEEEEEESSHHHHHHHHTT-SCCCEEEEECSSCCBTTTTBCGGGTTHHHHHHHHHHSCCSEEEECCCSSHHH
T ss_pred CCEEEEECCHHHHHHHHhh-CccceEEEecCCccCccCCCCccccCHHHHHHHHhcCCCcEEEEECCCCccH
Confidence 3455555555555444333 22233467777755332 23666777777665 699999866655
No 320
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=25.11 E-value=1e+02 Score=17.52 Aligned_cols=67 Identities=12% Similarity=0.013 Sum_probs=35.0
Q ss_pred CceEEEecCCCCH-HHHHHHHHHhhc--CCceEEEEcCCCcc-----cCCccCCcEEEEecCCCChhHHHHhhccccCCC
Q psy17637 58 EYDVLLLHGDMDQ-SERNSVITKFKR--QECRILVATDVAAR-----GLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAG 129 (150)
Q Consensus 58 ~~~~~~~~~~~~~-~~r~~~~~~f~~--g~~~vlv~T~~~~~-----Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~R~g 129 (150)
...+..+.-.++. ......++.++. ....+++.|..... ++.. . -.+.-|.+...+.+++.++.+..
T Consensus 50 ~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~---~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPD---S--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp CCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTT---C--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCC---c--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 4556666655543 333444444443 34566665543221 2221 1 13346888888888877765543
No 321
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=25.09 E-value=1e+02 Score=17.57 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=39.2
Q ss_pred ccccCceEEEecCCCCHHHHHHHHHHhhcC----CceEEEEcCCCcccC-Cc--cCCcEEEEecCCCChhHHHHhhcccc
Q psy17637 54 LTVKEYDVLLLHGDMDQSERNSVITKFKRQ----ECRILVATDVAARGL-DI--PHIRTVVNYDLARDIDTHTHRIGRTG 126 (150)
Q Consensus 54 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g----~~~vlv~T~~~~~Gi-di--~~~~~vi~~~~~~~~~~~~q~~GR~~ 126 (150)
+....+.+..+.-.++.......++.++.. ...|++.|....... .. .++.. .+.-|.+...+.+++.++.
T Consensus 43 l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~--~l~KP~~~~~l~~~i~~~l 120 (133)
T 3nhm_A 43 ALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDA--YLVKPVKPPVLIAQLHALL 120 (133)
T ss_dssp HHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSE--EEESSCCHHHHHHHHHHHH
T ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCce--EEeccCCHHHHHHHHHHHH
Confidence 334456677777666655566666666653 456776664332221 11 11222 2345888888888776654
No 322
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=24.72 E-value=20 Score=15.44 Aligned_cols=9 Identities=56% Similarity=0.833 Sum_probs=5.9
Q ss_pred hhccccCCC
Q psy17637 121 RIGRTGRAG 129 (150)
Q Consensus 121 ~~GR~~R~g 129 (150)
..||+||..
T Consensus 8 ~~~RtGRRN 16 (26)
T 1cmk_I 8 ASGRTGRRN 16 (26)
T ss_pred hcCcccccc
Confidence 357888763
No 323
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=24.51 E-value=1.6e+02 Score=19.64 Aligned_cols=71 Identities=18% Similarity=0.160 Sum_probs=41.6
Q ss_pred EEeecchhhHHHHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccc---cCceEEEecCCCCHHHHHHHHHHhh
Q psy17637 10 TLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTV---KEYDVLLLHGDMDQSERNSVITKFK 81 (150)
Q Consensus 10 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~ 81 (150)
+....+.-..+..++-.|......++|.+|.+...+ .|.|+....+ ..++++.+..--=-+.|+..++...
T Consensus 42 ILitdkKIs~i~~ilP~LE~v~~~~rpLlIIAEDve-gEALatLvvNklrg~l~v~AVKAPgFGdrRk~~L~DIA 115 (201)
T 3osx_A 42 ILLVDKKISNIRELLPVLEGVAKASKPLVIIAEDVE-GEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIA 115 (201)
T ss_dssp EEEEEEEECCHHHHHHHHHHHHTSSCCEEEEEEEEC-HHHHHHHHHHHHHTSCCEEEEECSSCHHHHHHHHHHHH
T ss_pred EEEEcCccCCHHHHHHHHHHHHHhCCCeEEEecccc-chhhhHHHHhhccceEEEEEEeCCCCccchhhhhHhHH
Confidence 334444333445666666665456789999998764 3444333322 2466776665444566777777764
No 324
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=24.01 E-value=1.1e+02 Score=17.48 Aligned_cols=46 Identities=9% Similarity=-0.008 Sum_probs=31.2
Q ss_pred CCeeEEehh-----h-hhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHh
Q psy17637 35 PPALMNLAM-----Q-LNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80 (150)
Q Consensus 35 ~~~ivf~~~-----~-~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 80 (150)
.+++||+.. . ..|..+...|...++.+..+.=...+..+..+.+..
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh
Confidence 468899872 1 258888888888888777776665665555554443
No 325
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=23.78 E-value=1.4e+02 Score=20.82 Aligned_cols=50 Identities=14% Similarity=0.083 Sum_probs=38.4
Q ss_pred CCCCeeEEehh--------------hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC
Q psy17637 33 EVPPALMNLAM--------------QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ 83 (150)
Q Consensus 33 ~~~~~ivf~~~--------------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 83 (150)
+.+-+||+++. ..-++.|...|...|+.+. ++..++.++-.+.++.|...
T Consensus 20 ~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 83 (278)
T 3od5_A 20 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEVSTV 83 (278)
T ss_dssp BCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred CcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhh
Confidence 34558888774 3458899999998999865 55679999999999888653
No 326
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=23.78 E-value=1.7e+02 Score=19.56 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=44.5
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHH-HHHHHHHhhc--CCceEEEEcC
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE-RNSVITKFKR--QECRILVATD 92 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~-r~~~~~~f~~--g~~~vlv~T~ 92 (150)
..+...+.+. +.++++...+.+..+.+...+...+..+..+..+++..+ -...++...+ |.+++||..-
T Consensus 26 ~~ia~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA 97 (256)
T 3gaf_A 26 RAIAGTFAKA---GASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNA 97 (256)
T ss_dssp HHHHHHHHHH---TCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3555555543 456778777778888888888776767777888775433 3333333322 5778888763
No 327
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=23.67 E-value=25 Score=21.92 Aligned_cols=36 Identities=8% Similarity=0.192 Sum_probs=21.6
Q ss_pred CCCe--eEEeh-hhhhHHHHHhhccc----------cCc-eEEEecCCCC
Q psy17637 34 VPPA--LMNLA-MQLNAEELANSLTV----------KEY-DVLLLHGDMD 69 (150)
Q Consensus 34 ~~~~--ivf~~-~~~~~~~l~~~L~~----------~~~-~~~~~~~~~~ 69 (150)
..++ ++||. +-..+...+..|.. .|+ .+..+.||+.
T Consensus 87 ~~~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~ 136 (161)
T 1c25_A 87 GKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYK 136 (161)
T ss_dssp TSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHH
T ss_pred CCCeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHH
Confidence 4454 45687 54445555555542 366 5788889853
No 328
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=23.58 E-value=93 Score=21.44 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=30.2
Q ss_pred hhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC
Q psy17637 45 LNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ 83 (150)
Q Consensus 45 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 83 (150)
.-++.|...|...|+.+. ++..++.++-.+.++.|...
T Consensus 44 ~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 81 (259)
T 3sir_A 44 VDCENLTRVLKQLDFEVT-VYKDCRYKDILRTIEYSASQ 81 (259)
T ss_dssp CHHHHHHHHHHHTTCEEE-EEEECSHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHh
Confidence 357888898988898854 56678899999999999753
No 329
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=23.54 E-value=1.1e+02 Score=21.29 Aligned_cols=45 Identities=9% Similarity=-0.019 Sum_probs=23.1
Q ss_pred HHHhhccccCceEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcCCC
Q psy17637 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFK-RQECRILVATDVA 94 (150)
Q Consensus 49 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~g~~~vlv~T~~~ 94 (150)
.+.+...+ ..++..-.|+.+-.+-.+..+... .|---+++.++..
T Consensus 54 ~v~~~~~~-rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 99 (283)
T 2pcq_A 54 RGLRALRP-RKPFLVGLMEETLPQAEGALLEAKAAGAMALLATPPRY 99 (283)
T ss_dssp HHHHTCCC-SSCCEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCT
T ss_pred HHHHHHHh-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEecCCcC
Confidence 44444444 455555566655544444444333 3655677776543
No 330
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=23.20 E-value=1.2e+02 Score=17.49 Aligned_cols=68 Identities=7% Similarity=0.085 Sum_probs=36.5
Q ss_pred cCceEEEecCCCCHHHHHHHHHHhhc--CCceEEEEcCCCccc-----CCccCCcEEEEecCCCChhHHHHhhccccC
Q psy17637 57 KEYDVLLLHGDMDQSERNSVITKFKR--QECRILVATDVAARG-----LDIPHIRTVVNYDLARDIDTHTHRIGRTGR 127 (150)
Q Consensus 57 ~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~G-----idi~~~~~vi~~~~~~~~~~~~q~~GR~~R 127 (150)
....+..+.-.++.....+.++.++. ....|++.|...... +.. ++.. .+.-|.+...+.+++.++.+
T Consensus 50 ~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~-g~~~--~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 50 HAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIEL-GVHL--FLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp HCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHH-CCSE--ECCSSCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecCcChHHHHHHHhC-Ccce--eEcCCCCHHHHHHHHHHHHH
Confidence 34567777766665555566666554 245677666543211 111 1221 23467777777776655443
No 331
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=23.16 E-value=1.1e+02 Score=17.31 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=38.9
Q ss_pred hhccccCceEEEecCCCCHHHHHHHHHHhhcC----CceEEEEcCCCcc-----cCCccCCcEEEEecCCCChhHHHHhh
Q psy17637 52 NSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ----ECRILVATDVAAR-----GLDIPHIRTVVNYDLARDIDTHTHRI 122 (150)
Q Consensus 52 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g----~~~vlv~T~~~~~-----Gidi~~~~~vi~~~~~~~~~~~~q~~ 122 (150)
+.+......+..+.-.|+.....+.++.++.. ...|++.|..... .+.. ++.. .+.-|.+...+.+++
T Consensus 40 ~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~-Ga~~--~l~KP~~~~~L~~~i 116 (122)
T 3gl9_A 40 EKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSL-GARK--VMRKPFSPSQFIEEV 116 (122)
T ss_dssp HHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHT-TCSE--EEESSCCHHHHHHHH
T ss_pred HHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhc-Chhh--hccCCCCHHHHHHHH
Confidence 33444556777787777766667777777642 3566666643221 1111 1111 233567777777766
Q ss_pred ccc
Q psy17637 123 GRT 125 (150)
Q Consensus 123 GR~ 125 (150)
.++
T Consensus 117 ~~~ 119 (122)
T 3gl9_A 117 KHL 119 (122)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 332
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=23.05 E-value=1.2e+02 Score=17.48 Aligned_cols=66 Identities=11% Similarity=-0.004 Sum_probs=30.1
Q ss_pred CceEEEecCCCC-HHHHHHHHHHhhc-CCceEEEEcCCCcc-----cCCccCCcEEEEecCCCChhHHHHhhcccc
Q psy17637 58 EYDVLLLHGDMD-QSERNSVITKFKR-QECRILVATDVAAR-----GLDIPHIRTVVNYDLARDIDTHTHRIGRTG 126 (150)
Q Consensus 58 ~~~~~~~~~~~~-~~~r~~~~~~f~~-g~~~vlv~T~~~~~-----Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~ 126 (150)
...+..+.-.++ ...-...++.++. ....|++.|..... .+.. ++..++ .-|.+...+.+++.++.
T Consensus 54 ~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~-g~~~~l--~kp~~~~~l~~~i~~~~ 126 (140)
T 3cg0_A 54 RPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQDVETFQRAKRV-NPFGYL--AKPVAADTLHRSIEMAI 126 (140)
T ss_dssp CCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCCCHHHHHHHHTT-CCSEEE--EESCCHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHhc-CCCEEE--eCCCCHHHHHHHHHHHH
Confidence 455666654443 1222333333332 34566665543221 1121 222222 34777777777665543
No 333
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=22.59 E-value=1.9e+02 Score=19.73 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=42.2
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHH-HHHHHHHHhh--cCCceEEEEcC
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQS-ERNSVITKFK--RQECRILVATD 92 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~r~~~~~~f~--~g~~~vlv~T~ 92 (150)
.+...|.+. +.++++...+.+.++++...+...+..+..+..+++.. .-...++... -|.+++||..-
T Consensus 43 aia~~la~~---G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA 113 (283)
T 3v8b_A 43 ATALALAAD---GVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANA 113 (283)
T ss_dssp HHHHHHHHT---TCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 455555443 45677777777778888887776666777777776543 3333333332 26678887763
No 334
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=22.45 E-value=73 Score=22.44 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=15.9
Q ss_pred ceEEEecCCCCHHHHHHHHHHhh-cCCceEEEEcCC
Q psy17637 59 YDVLLLHGDMDQSERNSVITKFK-RQECRILVATDV 93 (150)
Q Consensus 59 ~~~~~~~~~~~~~~r~~~~~~f~-~g~~~vlv~T~~ 93 (150)
+++..-.|+.+-.+-.+..+... .|---+++.++.
T Consensus 74 vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 109 (300)
T 3eb2_A 74 VPVVAGVASTSVADAVAQAKLYEKLGADGILAILEA 109 (300)
T ss_dssp SCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 34444445444444433333333 354456666543
No 335
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=21.91 E-value=2.2e+02 Score=20.33 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=28.0
Q ss_pred hhHHHHHhhccccCceEEEecC--------CCCHHHH-HHHHHHhhcCCceEEEEcC
Q psy17637 45 LNAEELANSLTVKEYDVLLLHG--------DMDQSER-NSVITKFKRQECRILVATD 92 (150)
Q Consensus 45 ~~~~~l~~~L~~~~~~~~~~~~--------~~~~~~r-~~~~~~f~~g~~~vlv~T~ 92 (150)
+..+...+.|+..|+++..-.. .-+.++| ..+.+.|.+.+++.++|+.
T Consensus 30 ~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 30 ENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp HHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred HHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 3455555666666666553221 1234455 5566777888888887763
No 336
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=21.85 E-value=1.9e+02 Score=19.48 Aligned_cols=68 Identities=18% Similarity=0.121 Sum_probs=39.0
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHH-HHHHHHHHhhc---CCceEEEEc
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQS-ERNSVITKFKR---QECRILVAT 91 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~r~~~~~~f~~---g~~~vlv~T 91 (150)
..+...|.+. +.++++...+.+..+.+.+.+...+..+..+..+++.. .-...++.... |.+++||..
T Consensus 35 ~aia~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~id~lv~n 106 (273)
T 1ae1_A 35 YAIVEELAGL---GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNN 106 (273)
T ss_dssp HHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSCCCEEEEC
T ss_pred HHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCcEEEEC
Confidence 3555555543 45666766666666666666655555566666666433 23333333322 667888776
No 337
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=21.63 E-value=1.2e+02 Score=16.98 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=34.1
Q ss_pred cCceEEEecCCCCHHHHHHHHHHhhc----CCceEEEEcCCCcccCCc----cCCcEEEEecCCCChhHHHHhhccccC
Q psy17637 57 KEYDVLLLHGDMDQSERNSVITKFKR----QECRILVATDVAARGLDI----PHIRTVVNYDLARDIDTHTHRIGRTGR 127 (150)
Q Consensus 57 ~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~Gidi----~~~~~vi~~~~~~~~~~~~q~~GR~~R 127 (150)
....+..+.-.|+.....+.++.++. ....+++.|......... .++.- .+.-|.+...+.+++.++.+
T Consensus 44 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~--~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 44 NKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEA--YISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp HCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTCSE--EECSSCCHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECCCCHHHHHHHHhCCCCE--EEeCCCCHHHHHHHHHHHHh
Confidence 34556666655554444455555553 345677666433221110 12222 23457888888887766543
No 338
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=21.54 E-value=1.8e+02 Score=19.14 Aligned_cols=69 Identities=10% Similarity=0.058 Sum_probs=45.2
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHH-HHHHHHHHhhc--CCceEEEEcC
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQS-ERNSVITKFKR--QECRILVATD 92 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~r~~~~~~f~~--g~~~vlv~T~ 92 (150)
..+...+.+. +.++++...+.+..+.+...+...+..+..+..+++.. .-...++...+ |.+++||..-
T Consensus 23 ~~~a~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~A 94 (253)
T 3qiv_A 23 QAYAEALARE---GAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNA 94 (253)
T ss_dssp HHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHC---CCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4566666553 55688888888888888888877676777777777543 33334443322 5678887763
No 339
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=21.51 E-value=1.3e+02 Score=17.45 Aligned_cols=66 Identities=8% Similarity=0.097 Sum_probs=32.3
Q ss_pred cCceEEEecCCCCHHHHHHHHHHhhc--CCceEEEEcCCCcc-----cCCccCCcEEEEecCCCChhHHHHhhccc
Q psy17637 57 KEYDVLLLHGDMDQSERNSVITKFKR--QECRILVATDVAAR-----GLDIPHIRTVVNYDLARDIDTHTHRIGRT 125 (150)
Q Consensus 57 ~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~-----Gidi~~~~~vi~~~~~~~~~~~~q~~GR~ 125 (150)
....+..+.-.++.......++.++. ....+++.|..... .+.. ++.- .+.-|.+...+.+++.++
T Consensus 47 ~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~-ga~~--~l~KP~~~~~L~~~i~~~ 119 (137)
T 3cfy_A 47 SKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHGSVDLAVNLIQK-GAED--FLEKPINADRLKTSVALH 119 (137)
T ss_dssp HCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHT-TCSE--EEESSCCHHHHHHHHHHH
T ss_pred cCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEecCcHHHHHHHHHC-CccE--EEeCCCCHHHHHHHHHHH
Confidence 34556666655544334455555543 34566666543211 1111 2222 223577777777666543
No 340
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=21.50 E-value=2.6e+02 Score=21.86 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=30.8
Q ss_pred CCCeeEEehhhhh---HHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC-----CceEEEEc
Q psy17637 34 VPPALMNLAMQLN---AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ-----ECRILVAT 91 (150)
Q Consensus 34 ~~~~ivf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-----~~~vlv~T 91 (150)
..++||.|++.-. .+++..++.. .+.+..++++. ..++...+..|... ...|+|+|
T Consensus 114 ~~~~LiV~P~sll~qW~~E~~~~~~~-~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~vvi~t 177 (644)
T 1z3i_X 114 IDKVIVVSPSSLVRNWYNEVGKWLGG-RVQPVAIDGGS-KDEIDSKLVNFISQQGMRIPTPILIIS 177 (644)
T ss_dssp CSCEEEEECHHHHHHHHHHHHHHHGG-GCCEEEECSSC-HHHHHHHHHHHHCCCSSCCSCCEEEEE
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCC-CeeEEEEeCCC-HHHHHHHHHHHHHhcCCCCCCcEEEee
Confidence 3568999987322 2344444332 35566677664 34444444555432 35688888
No 341
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=21.47 E-value=1.3e+02 Score=17.29 Aligned_cols=66 Identities=8% Similarity=0.097 Sum_probs=38.5
Q ss_pred ceEEEecCCCCHHHHHHHHHHhhcC---CceEEEEcCCCccc-----CCccCCcEEEEecCCCChhHHHHhhccccC
Q psy17637 59 YDVLLLHGDMDQSERNSVITKFKRQ---ECRILVATDVAARG-----LDIPHIRTVVNYDLARDIDTHTHRIGRTGR 127 (150)
Q Consensus 59 ~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vlv~T~~~~~G-----idi~~~~~vi~~~~~~~~~~~~q~~GR~~R 127 (150)
+.+..+.-.++.......++.++.. ...+++.|...... +.. ++.. .+.-|.+...+.+++-++..
T Consensus 53 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~-g~~~--~l~KP~~~~~l~~~i~~~~~ 126 (136)
T 3hdv_A 53 IGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHL-GVVD--FLLKPVDLGKLLELVNKELK 126 (136)
T ss_dssp EEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHT-TCSE--EEESSCCHHHHHHHHHHHHC
T ss_pred CcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhC-Ccce--EEeCCCCHHHHHHHHHHHhc
Confidence 6677777666655566666666643 35677666543221 111 2222 23467888888888776554
No 342
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.46 E-value=1.2e+02 Score=17.22 Aligned_cols=67 Identities=12% Similarity=0.245 Sum_probs=35.6
Q ss_pred cCceEEEecCCCCHHHHHHHHHHhhcC----CceEEEEcCCCcc-----cCCccCCcEEEEecCCCChhHHHHhhcccc
Q psy17637 57 KEYDVLLLHGDMDQSERNSVITKFKRQ----ECRILVATDVAAR-----GLDIPHIRTVVNYDLARDIDTHTHRIGRTG 126 (150)
Q Consensus 57 ~~~~~~~~~~~~~~~~r~~~~~~f~~g----~~~vlv~T~~~~~-----Gidi~~~~~vi~~~~~~~~~~~~q~~GR~~ 126 (150)
....+..+.-.++.....+.++.++.. ...+++.|..... .+.. ++..+ +.-|.+...+.+++.++.
T Consensus 54 ~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~-g~~~~--l~kP~~~~~l~~~i~~~~ 129 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDL-HVNCY--ITKSANLSQLFQIVKGIE 129 (140)
T ss_dssp CCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHT-TCSEE--EECCSSHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHh-chhhe--ecCCCCHHHHHHHHHHHH
Confidence 456677777666554455666666542 3456655543221 1111 22222 235777888777665543
No 343
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=21.17 E-value=1.7e+02 Score=18.82 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=36.4
Q ss_pred CCCeeEEehh--------------hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcC
Q psy17637 34 VPPALMNLAM--------------QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQ 83 (150)
Q Consensus 34 ~~~~ivf~~~--------------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 83 (150)
.+-+|||.+. ...++.|...|...|+.+. ++..++.++-.+.++.|...
T Consensus 44 rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~-v~~dlt~~em~~~l~~~s~~ 106 (173)
T 2ql9_A 44 LGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVI-VYNDCSCAKMQDLLKKASEE 106 (173)
T ss_dssp EEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred ceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHh
Confidence 3458888753 3457788888888888764 55678888888899888754
No 344
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=21.09 E-value=2e+02 Score=19.48 Aligned_cols=68 Identities=15% Similarity=0.055 Sum_probs=41.1
Q ss_pred HHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHH-HHHHHHHhh--cCCceEEEEcC
Q psy17637 22 HLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE-RNSVITKFK--RQECRILVATD 92 (150)
Q Consensus 22 ~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~-r~~~~~~f~--~g~~~vlv~T~ 92 (150)
.+...|.. .+.++++...+.+..+.+.+.+...+..+..+..+++..+ -...++... -|.+++||..-
T Consensus 39 aia~~la~---~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA 109 (279)
T 3sju_A 39 AVARTLAA---RGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSA 109 (279)
T ss_dssp HHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCSCCEEEECC
T ss_pred HHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence 45555544 3456777777777777777777766666777777765433 233333332 25677777653
No 345
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=21.05 E-value=2e+02 Score=19.51 Aligned_cols=60 Identities=5% Similarity=0.019 Sum_probs=36.2
Q ss_pred CCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHhhcCCceEEEEcCCCcccCC
Q psy17637 35 PPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLD 99 (150)
Q Consensus 35 ~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 99 (150)
..++|-+.+.+.+..... ...+..+..-+.+++.++..++.+.-+ +..++++.+ ++.|++
T Consensus 55 ~DVvIDft~p~a~~~~~~--l~~g~~vVigTTG~s~e~~~~l~~aa~--~~~v~~a~N-~S~Gv~ 114 (243)
T 3qy9_A 55 ADVAIDFSNPNLLFPLLD--EDFHLPLVVATTGEKEKLLNKLDELSQ--NMPVFFSAN-MSYGVH 114 (243)
T ss_dssp CSEEEECSCHHHHHHHHT--SCCCCCEEECCCSSHHHHHHHHHHHTT--TSEEEECSS-CCHHHH
T ss_pred CCEEEEeCChHHHHHHHH--HhcCCceEeCCCCCCHHHHHHHHHHHh--cCCEEEECC-ccHHHH
Confidence 457774555566555555 456777777777787766655554433 367766553 444554
No 346
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=21.01 E-value=2e+02 Score=19.44 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=42.2
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHH-HHHHHHHhh--cCCceEEEEcC
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE-RNSVITKFK--RQECRILVATD 92 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~-r~~~~~~f~--~g~~~vlv~T~ 92 (150)
..+...|.+. +.++++...+.+..+++.+.+...+..+..+..+++..+ -...++... -|.+++||..-
T Consensus 40 ~aia~~la~~---G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nA 111 (271)
T 4ibo_A 40 RAMAEGLAVA---GARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGIDVDILVNNA 111 (271)
T ss_dssp HHHHHHHHHT---TCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCCCCEEEECC
T ss_pred HHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEEEECC
Confidence 3555555543 456777777777777777777666666777777765433 333444332 25677777663
No 347
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A
Probab=20.91 E-value=40 Score=22.26 Aligned_cols=36 Identities=8% Similarity=0.162 Sum_probs=21.4
Q ss_pred CCCCe--eEEeh-hhhhHHHHHhhcc----------ccCc-eEEEecCCC
Q psy17637 33 EVPPA--LMNLA-MQLNAEELANSLT----------VKEY-DVLLLHGDM 68 (150)
Q Consensus 33 ~~~~~--ivf~~-~~~~~~~l~~~L~----------~~~~-~~~~~~~~~ 68 (150)
+..++ |+||. +-..+...+..|. ..|+ .+..+.||+
T Consensus 108 ~d~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~ 157 (211)
T 1qb0_A 108 LDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGY 157 (211)
T ss_dssp TTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHH
T ss_pred CCCCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHH
Confidence 34555 67788 5444444444443 3476 577888985
No 348
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=20.88 E-value=2e+02 Score=19.42 Aligned_cols=69 Identities=14% Similarity=0.066 Sum_probs=45.2
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHH-HHHHHHHHhh--cCCceEEEEcC
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQS-ERNSVITKFK--RQECRILVATD 92 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~r~~~~~~f~--~g~~~vlv~T~ 92 (150)
..+...|.. .+.++++...+.+.++.+...+...+..+..+..+++.. .-...++... -|.+++||..-
T Consensus 18 ~aia~~la~---~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA 89 (264)
T 3tfo_A 18 EGIARELGV---AGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNA 89 (264)
T ss_dssp HHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 355555554 355788888888888888888877777777777777543 3334444332 26788888763
No 349
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=20.81 E-value=1.5e+02 Score=18.00 Aligned_cols=46 Identities=9% Similarity=-0.049 Sum_probs=30.8
Q ss_pred CCeeEEehh------hhhHHHHHhhccccCceEEEecCCCCHHHHHHHHHHh
Q psy17637 35 PPALMNLAM------QLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80 (150)
Q Consensus 35 ~~~ivf~~~------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 80 (150)
.+++||+.+ =..|..+...|...++.+..+.=...+..+..+.+..
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~ 86 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYA 86 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHH
Confidence 478999873 3358888888888887766665555565555554443
No 350
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=20.79 E-value=1.3e+02 Score=17.32 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=35.1
Q ss_pred cccCceEEEecCCCCHHHHHHHHHHhhc----CCceEEEEcCCCcc-----cCCccCCcEEEEecCCCChhHHHHhhccc
Q psy17637 55 TVKEYDVLLLHGDMDQSERNSVITKFKR----QECRILVATDVAAR-----GLDIPHIRTVVNYDLARDIDTHTHRIGRT 125 (150)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~-----Gidi~~~~~vi~~~~~~~~~~~~q~~GR~ 125 (150)
......+..+.-.++.......++.++. ....+++.|..... .+.. ++.. .+.-|.+...+.+++.++
T Consensus 43 ~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~-g~~~--~l~KP~~~~~l~~~i~~~ 119 (140)
T 3n53_A 43 DHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHS-GADD--YLTKPFNRNDLLSRIEIH 119 (140)
T ss_dssp HHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTC-CCSE--EEESSCCHHHHHHHHHHH
T ss_pred hcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhc-CCCe--eeeCCCCHHHHHHHHHHH
Confidence 3345667778777776666677777665 34566666643222 2222 2222 233577888888777665
Q ss_pred c
Q psy17637 126 G 126 (150)
Q Consensus 126 ~ 126 (150)
.
T Consensus 120 ~ 120 (140)
T 3n53_A 120 L 120 (140)
T ss_dssp H
T ss_pred H
Confidence 4
No 351
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=20.37 E-value=1.6e+02 Score=18.19 Aligned_cols=70 Identities=11% Similarity=0.141 Sum_probs=35.8
Q ss_pred hccccCceEEEecCCCCHHHHHHHHHHhhc--CCceEEEEcCCCcc-----cCCccCCcEEEEecCCCChhHHHHhhccc
Q psy17637 53 SLTVKEYDVLLLHGDMDQSERNSVITKFKR--QECRILVATDVAAR-----GLDIPHIRTVVNYDLARDIDTHTHRIGRT 125 (150)
Q Consensus 53 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~-----Gidi~~~~~vi~~~~~~~~~~~~q~~GR~ 125 (150)
.+....+.+..+.-.|+.....+.++.++. ....|++.|..... .+......++ .-|.+...+..++-++
T Consensus 46 ~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l---~KP~~~~~L~~~i~~~ 122 (184)
T 3rqi_A 46 LAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYL---AKPANVESILAALQTN 122 (184)
T ss_dssp HHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCSEEE---ESSCCHHHHHHHTSTT
T ss_pred HHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHhCHHHhe---eCCCCHHHHHHHHHHH
Confidence 344445566666655544334445544443 34677776653322 2222222233 3577788877766554
No 352
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=20.27 E-value=2.2e+02 Score=23.05 Aligned_cols=58 Identities=9% Similarity=0.190 Sum_probs=32.6
Q ss_pred CCCCCeeEEehhhhhHH----HHHhhccccCceEEEecCCCCHHHHHHHHHHh--------hcCCceEEEEcC
Q psy17637 32 QEVPPALMNLAMQLNAE----ELANSLTVKEYDVLLLHGDMDQSERNSVITKF--------KRQECRILVATD 92 (150)
Q Consensus 32 ~~~~~~ivf~~~~~~~~----~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f--------~~g~~~vlv~T~ 92 (150)
....++||.|+. ..+. ++..++ .+..+..+||.............+ ..+...|+|+|.
T Consensus 284 ~~~~~~LIV~P~-sll~qW~~E~~~~~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy 353 (800)
T 3mwy_W 284 RQNGPHIIVVPL-STMPAWLDTFEKWA--PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTY 353 (800)
T ss_dssp SCCSCEEEECCT-TTHHHHHHHHHHHS--TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECT
T ss_pred CCCCCEEEEECc-hHHHHHHHHHHHHC--CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecH
Confidence 456789999984 3333 333333 367788888875433322222211 223457899884
No 353
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.21 E-value=1.7e+02 Score=18.32 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=13.5
Q ss_pred HHHHHhhccccCceEEEecCCCCHHH
Q psy17637 47 AEELANSLTVKEYDVLLLHGDMDQSE 72 (150)
Q Consensus 47 ~~~l~~~L~~~~~~~~~~~~~~~~~~ 72 (150)
...++..|...|+.+..+-...++++
T Consensus 35 ~~~va~~l~~~G~eVi~lG~~~p~e~ 60 (161)
T 2yxb_A 35 AKVVARALRDAGFEVVYTGLRQTPEQ 60 (161)
T ss_dssp HHHHHHHHHHTTCEEECCCSBCCHHH
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 34455555555666555544555543
No 354
>3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp}
Probab=20.15 E-value=99 Score=22.43 Aligned_cols=31 Identities=10% Similarity=0.113 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHhhcCCceEEEEcCCCcccCC
Q psy17637 69 DQSERNSVITKFKRQECRILVATDVAARGLD 99 (150)
Q Consensus 69 ~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 99 (150)
++++|+.+++.+.+|.++++|+|+....-.+
T Consensus 238 ~~~dr~aL~~al~dG~id~~iaTDHaPh~~~ 268 (359)
T 3pnu_A 238 RYEDKEALCELAFSGYEKVMFGSDSAPHPKD 268 (359)
T ss_dssp CHHHHHHHHHHHHTTCTTEEECCCBCCCBC-
T ss_pred CHHHHHHHHHHHhcCCCCEEEecCCCCCCHH
Confidence 5788999999999999998899986655443
No 355
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=20.11 E-value=2.1e+02 Score=19.43 Aligned_cols=69 Identities=7% Similarity=-0.002 Sum_probs=45.0
Q ss_pred HHHHHHHHhccCCCCCeeEEehhhhhHHHHHhhccccCceEEEecCCCCHHH-HHHHHHHhh--cCCceEEEEcC
Q psy17637 21 GHLVRNLEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSE-RNSVITKFK--RQECRILVATD 92 (150)
Q Consensus 21 ~~ll~~l~~~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~-r~~~~~~f~--~g~~~vlv~T~ 92 (150)
..+...|... +.++++...+.+.++++...+...+..+..+..+++..+ -...++... -|.+++||..-
T Consensus 22 ~aia~~la~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnA 93 (280)
T 3tox_A 22 RAAALLFARE---GAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNA 93 (280)
T ss_dssp HHHHHHHHHT---TCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3556666553 556777777778888888888776777788888875433 333344332 26788888763
Done!