RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17637
(150 letters)
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 158 bits (402), Expect = 1e-47
Identities = 45/102 (44%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
A+ LA+ L+ KE+ +HGD QS+R + FK ++L+AT VA+RGLDI +I+
Sbjct: 312 GADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKH 371
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGEL 147
V+NYD+ ID + HRIGRTGR GN G A + +KD +
Sbjct: 372 VINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFD-PEKDRAI 412
Score = 58.7 bits (143), Expect = 3e-11
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 1 RAGNKGVAYTLVT-DKDKEFAGHLVRNLEGANQEVPPAL 38
R GN G A + +KD+ A LV+ LEG+ Q VP L
Sbjct: 393 RVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFL 431
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 156 bits (397), Expect = 4e-47
Identities = 41/98 (41%), Positives = 62/98 (63%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
A+ L + L + Y +HGD Q +R + +F+ + ILVAT VAARGLDI +++
Sbjct: 288 GADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKH 347
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
V+N+DL DI+ + HRIGRTGR GN G+A + +++
Sbjct: 348 VINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 385
Score = 65.6 bits (161), Expect = 1e-13
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
R GN G+A + +++ L+ L A QEVP L N+A +
Sbjct: 369 RVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYE 412
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 154 bits (392), Expect = 9e-46
Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 6/110 (5%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
AEE+A +T + V L G+++ ++R++++ F+ ++LV T+V ARG+D+ +
Sbjct: 369 TAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNL 428
Query: 106 VVNYDL------ARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRS 149
VVNYD+ D T+ HRIGRTGR G GV+ V DK E+ +
Sbjct: 429 VVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNA 478
Score = 32.9 bits (76), Expect = 0.032
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLE 28
R G GV+ V DK + ++
Sbjct: 456 RFGRVGVSINFVHDKKSW---EEMNAIQ 480
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase;
RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo
sapiens} SCOP: c.37.1.19
Length = 172
Score = 143 bits (362), Expect = 1e-44
Identities = 40/102 (39%), Positives = 57/102 (55%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
LA L + + + +H M Q ER S +FK + RILVAT++ RG+DI +
Sbjct: 44 CIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA 103
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELR 148
NYD+ D DT+ HR+ R GR G KG+A T V+D++ L
Sbjct: 104 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILN 145
Score = 27.9 bits (63), Expect = 0.82
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 1 RAGNKGVAYTLVTDKD 16
R G KG+A T V+D++
Sbjct: 124 RFGTKGLAITFVSDEN 139
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation,
nucleotide-binding, hydrolase, RNA-binding, ATP-binding,
DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Length = 185
Score = 141 bits (358), Expect = 8e-44
Identities = 41/99 (41%), Positives = 63/99 (63%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
A+ L + L + Y +HGD Q +R + +F+ + ILVAT VAARGLDI +++
Sbjct: 58 GADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKH 117
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
V+N+DL DI+ + HRIGRTGR GN G+A + +++ +
Sbjct: 118 VINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 156
Score = 59.9 bits (146), Expect = 4e-12
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQ 44
R GN G+A + +++ L+ L A QEVP L N+A +
Sbjct: 139 RVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYE 182
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase;
1.95A {Bacillus subtilis}
Length = 163
Score = 139 bits (353), Expect = 3e-43
Identities = 48/98 (48%), Positives = 63/98 (64%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
+L + L Y +HG M Q +R V+ +FKR E R LVATDVAARG+DI +I V
Sbjct: 48 VNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLV 107
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYDL + +++ HR GRTGRAGNKG A + VT +K
Sbjct: 108 INYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKR 145
Score = 30.6 bits (70), Expect = 0.11
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 1 RAGNKGVAYTLVTDKDKEF 19
RAGNKG A + VT +K F
Sbjct: 128 RAGNKGKAISFVTAFEKRF 146
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 145 bits (368), Expect = 5e-43
Identities = 39/98 (39%), Positives = 62/98 (63%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
EEL L ++ V ++ D+ Q ER++++ +F+ RIL++TD+ ARG+D+ + V
Sbjct: 272 VEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 331
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYDL + + + HRIGR GR G KGVA VT++D
Sbjct: 332 INYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 369
Score = 32.1 bits (74), Expect = 0.043
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGA-NQEVPPALMNLAMQLN 46
R G KGVA VT++D +R LE + ++ ++A LN
Sbjct: 352 RFGRKGVAINFVTNEDV----GAMRELEKFYSTQIEELPSDIATLLN 394
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 145 bits (367), Expect = 1e-42
Identities = 40/97 (41%), Positives = 64/97 (65%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ L + +++ V +HGDMDQ ER+ ++ +F+ R+L+ TD+ ARG+D+ + V+
Sbjct: 294 DWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
NYDL + + + HRIGR GR G KGVA +VT++DK
Sbjct: 354 NYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKR 390
Score = 30.6 bits (70), Expect = 0.18
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGA-NQEVPPALMNLA 42
R G KGVA +VT++DK +R++E N + +N+A
Sbjct: 373 RFGRKGVAINMVTEEDK----RTLRDIETFYNTSIEEMPLNVA 411
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity
A; hydrolase inhibitor-hydrolase complex, DEAD box RNA
helicase; 2.90A {Escherichia coli}
Length = 170
Score = 138 bits (349), Expect = 1e-42
Identities = 46/98 (46%), Positives = 57/98 (58%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
ELAN L + L G+M Q +RN I + +LVATDVAARG+DIP + V
Sbjct: 43 VHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHV 102
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
N+D+ R DT+ HRIGRT RAG KG A +LV D
Sbjct: 103 FNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 140
Score = 27.5 bits (62), Expect = 1.2
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 1 RAGNKGVAYTLVTDKDKEF 19
RAG KG A +LV D
Sbjct: 123 RAGRKGTAISLVEAHDHLL 141
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural
genomics, structural consortium, SGC, alternative
initiation, ATP-binding, devel protein; 2.80A {Homo
sapiens}
Length = 175
Score = 138 bits (349), Expect = 1e-42
Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 6/104 (5%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A+ L + + V LL G++ +R S+I +F+ + ++L+ T+V ARG+D+ + V
Sbjct: 47 AKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIV 106
Query: 107 VNYDL------ARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
VN+DL D +T+ HRIGRTGR G KG+A+ ++ +
Sbjct: 107 VNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELP 150
Score = 29.9 bits (68), Expect = 0.18
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 1 RAGNKGVAYTLVTDKDKE 18
R G KG+A+ ++ +
Sbjct: 133 RFGKKGLAFNMIEVDELP 150
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation,
rRNA processing, mRNA splicing, mRNA transport; HET:
ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB:
2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B
2zu6_A
Length = 410
Score = 144 bits (366), Expect = 1e-42
Identities = 40/96 (41%), Positives = 60/96 (62%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+ L + + V +HGDM Q ER S++ +F+ R+L++TDV ARGLD+P + ++
Sbjct: 290 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 349
Query: 108 NYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
NYDL + + + HRIGR+GR G KGVA V + D
Sbjct: 350 NYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 385
Score = 30.6 bits (70), Expect = 0.16
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGA-NQEVPPALMNLA 42
R G KGVA V + D ++R++E + ++ MN+A
Sbjct: 369 RYGRKGVAINFVKNDDI----RILRDIEQYYSTQIDEMPMNVA 407
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein,
translation; 1.75A {Saccharomyces cerevisiae} SCOP:
c.37.1.19
Length = 165
Score = 137 bits (348), Expect = 1e-42
Identities = 39/98 (39%), Positives = 62/98 (63%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
EEL L ++ V ++ D+ Q ER++++ +F+ RIL++TD+ ARG+D+ + V
Sbjct: 43 VEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 102
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NYDL + + + HRIGR GR G KGVA VT++D
Sbjct: 103 INYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 140
Score = 29.8 bits (68), Expect = 0.21
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 1 RAGNKGVAYTLVTDKDKE 18
R G KGVA VT++D
Sbjct: 123 RFGRKGVAINFVTNEDVG 140
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics,
structural genomic consortium, SGC, hydrolase; 2.60A
{Homo sapiens}
Length = 191
Score = 138 bits (350), Expect = 1e-42
Identities = 41/102 (40%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
+ + + L +K + + +HG DQ ER I F+ + +LVATDVA++GLD P I+
Sbjct: 66 DVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQH 125
Query: 106 VVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGEL 147
V+NYD+ +I+ + HRIGRTG +GN G+A T + K D +
Sbjct: 126 VINYDMPEEIENYVHRIGRTGCSGNTGIATTFIN-KACDESV 166
Score = 53.8 bits (130), Expect = 6e-10
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 1 RAGNKGVAYTLVT-DKDKEFAGHLVRNLEGANQEVPPALMNLAM 43
+GN G+A T + D+ L L A Q+VPP L L
Sbjct: 147 CSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHC 190
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 142 bits (361), Expect = 5e-42
Identities = 37/98 (37%), Positives = 56/98 (57%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
E LA +T Y H M Q ERN V +F++ + R LV +D+ RG+DI + V
Sbjct: 271 VELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVV 330
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+N+D + +T+ HRIGR+GR G+ G+A L+ D+
Sbjct: 331 INFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRF 368
Score = 30.2 bits (69), Expect = 0.24
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 1 RAGNKGVAYTLVTDKDKE 18
R G+ G+A L+ D+
Sbjct: 351 RFGHLGLAINLINWNDRF 368
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 141 bits (358), Expect = 1e-41
Identities = 40/103 (38%), Positives = 57/103 (55%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
LA L + + + +H M Q ER S +FK + RILVAT++ RG+DI +
Sbjct: 263 CIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA 322
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRS 149
NYD+ D DT+ HR+ R GR G KG+A T V+D++ L
Sbjct: 323 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILND 365
Score = 27.9 bits (63), Expect = 1.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 1 RAGNKGVAYTLVTDKD 16
R G KG+A T V+D++
Sbjct: 343 RFGTKGLAITFVSDEN 358
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein,
ATPase, RNA binding protein; 3.00A {Methanocaldococcus
jannaschii} SCOP: c.37.1.19 c.37.1.19
Length = 367
Score = 140 bits (355), Expect = 2e-41
Identities = 41/98 (41%), Positives = 66/98 (67%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
+ELA+ L + +HGD+ QS+R VI FK+++ RIL+ATDV +RG+D+ + V
Sbjct: 251 TKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCV 310
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+NY L ++ +++ HRIGRTGRAG KG A +++ ++
Sbjct: 311 INYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYK 348
Score = 28.6 bits (65), Expect = 0.67
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLE 28
RAG KG A +++ ++ +R +E
Sbjct: 331 RAGKKGKAISIINRREY----KKLRYIE 354
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 141 bits (357), Expect = 2e-41
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A LA L+ + + V LL G+M +R +VI +F+ + ++LV T+V ARG+D+ + V
Sbjct: 279 ASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVV 338
Query: 107 VNYDL------ARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRS 149
+N+DL D +T+ HRIGRTGR G +G+A +V K L
Sbjct: 339 INFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 387
Score = 29.4 bits (67), Expect = 0.35
Identities = 10/53 (18%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGA-NQEVPPALMNLAMQLNAEELAN 52
R G +G+A +V K +++ ++ N+++ + ++ E++AN
Sbjct: 365 RFGKRGLAVNMVDSKHSM---NILNRIQEHFNKKIERLDTDDLDEI--EKIAN 412
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase,
mRNA-export, nuclear pore, hydrolase-RNA complex; HET:
ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A*
3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A
3pev_A* 3peu_A*
Length = 395
Score = 140 bits (356), Expect = 3e-41
Identities = 46/110 (41%), Positives = 64/110 (58%), Gaps = 6/110 (5%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
A L L + ++V +LHGD+ ER+ +I F+ ++L+ T+V ARG+DIP +
Sbjct: 255 TANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSM 314
Query: 106 VVNYDL------ARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRS 149
VVNYDL D T+ HRIGRTGR G KGVA + V DK+ L +
Sbjct: 315 VVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSA 364
Score = 31.0 bits (71), Expect = 0.11
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEELANSL 54
R G KGVA + V DK+ +++ ++ ++ + E++ +
Sbjct: 342 RFGRKGVAISFVHDKNSF---NILSAIQKYFGDIEMTRVPTDDWDEVEKIVKKV 392
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer,
ATP-binding, helicase, hydrolase, nucleotide-binding;
2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Length = 212
Score = 135 bits (342), Expect = 5e-41
Identities = 44/98 (44%), Positives = 58/98 (59%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
EE+A L + LHGD+ Q ER V+ F++ E R+LVATDVAARGLDIP + V
Sbjct: 44 TEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLV 103
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
V+Y L + + HR GRTGRAG G L +++
Sbjct: 104 VHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERR 141
Score = 27.6 bits (62), Expect = 1.5
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLE 28
RAG G L +++ V LE
Sbjct: 124 RAGRGGRVVLLYGPRER----RDVEALE 147
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 139 bits (353), Expect = 3e-40
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
A LA L+ + + V LL G+M +R +VI +F+ + ++LV T+V ARG+D+ + V
Sbjct: 346 ASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVV 405
Query: 107 VNYDL------ARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGELRS 149
+N+DL D +T+ HRIGRTGR G +G+A +V K L
Sbjct: 406 INFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 454
Score = 29.2 bits (66), Expect = 0.52
Identities = 10/53 (18%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLEGA-NQEVPPALMNLAMQLNAEELAN 52
R G +G+A +V K +++ ++ N+++ + ++ E++AN
Sbjct: 432 RFGKRGLAVNMVDSKHSM---NILNRIQEHFNKKIERLDTDDLDEI--EKIAN 479
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA
recognition motif, ATP-BIND helicase,
nucleotide-binding; 2.80A {Thermus thermophilus}
Length = 300
Score = 136 bits (343), Expect = 3e-40
Identities = 44/98 (44%), Positives = 58/98 (59%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
EE+A L + LHGDM Q ER V+ F++ E R+LVATDVAARGLDIP + V
Sbjct: 41 TEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLV 100
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
V+Y + + + HR GRTGRAG G L +++
Sbjct: 101 VHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERR 138
Score = 27.8 bits (62), Expect = 1.2
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHLVRNLE 28
RAG G L +++ V LE
Sbjct: 121 RAGRGGRVVLLYGPRER----RDVEALE 144
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD;
ATP-binding, hydrolase, nucleotide-binding, RNA binding
protein, structural genomics; 1.90A {Sulfolobus
tokodaii}
Length = 337
Score = 130 bits (330), Expect = 6e-38
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
+L + + L GD+ QS RN I F+ E +L+ TDVA+RGLDIP + V
Sbjct: 233 VAKLVRLF----DNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKV 288
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTD 140
+N+D +D+ T+ HRIGRTGR G KG A T + +
Sbjct: 289 INFDAPQDLRTYIHRIGRTGRMGRKGEAITFILN 322
Score = 26.7 bits (60), Expect = 2.8
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1 RAGNKGVAYTLVTD 14
R G KG A T + +
Sbjct: 309 RMGRKGEAITFILN 322
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA
helicase, DEAD-BOX, ATP-binding, HE hydrolase,
mitochondrion; HET: ANP; 1.90A {Saccharomyces
cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 130 bits (328), Expect = 2e-36
Identities = 31/96 (32%), Positives = 55/96 (57%)
Query: 49 ELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVN 108
+ + K+ +L HG + Q++R S++ +FK+ E ILV TDV ARG+D P++ V+
Sbjct: 357 SILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 416
Query: 109 YDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
+ ++ + HRIGRT R+G +G + + +
Sbjct: 417 IGVPSELANYIHRIGRTARSGKEGSSVLFICKDELP 452
Score = 30.1 bits (68), Expect = 0.23
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHL--VRNLEGANQEVPPALMNLAMQLNAEELANSLTVKE 58
R+G +G + + + F L +N+ A QE + ++ + +
Sbjct: 435 RSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISD 494
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 128 bits (322), Expect = 2e-35
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 47 AEELANSLTVKE---YDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHI 103
L + L + +L HG + Q++R S++ +FK+ E ILV TDV ARG+D P++
Sbjct: 301 TSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNV 360
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKD 144
V+ + ++ + HRIGRT R+G +G + + +
Sbjct: 361 HEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELP 401
Score = 29.4 bits (66), Expect = 0.51
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 1 RAGNKGVAYTLVTDKDKEFAGHL--VRNLEGANQEVPPALMNLAMQLNAEELANSLTVKE 58
R+G +G + + + F L +N+ A QE + ++ + +
Sbjct: 384 RSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISD 443
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 90.2 bits (224), Expect = 3e-22
Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDV----AARGLDIPH 102
+EL L +++V + ++ FK + IL+ RG+D+P
Sbjct: 265 GKELYEYLKRFKFNVGETWSEFEK-----NFEDFKVGKINILIGVQAYYGKLTRGVDLPE 319
Query: 103 -IRTVVNYDL--ARDIDTHTHRIGRTGRAGNKGV--AYTLVTDKDKD 144
I+ V+ + D+ T+ GR+ R N + +++ ++D++
Sbjct: 320 RIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEE 366
Score = 30.1 bits (68), Expect = 0.25
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 41 LAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT 91
L Q E L ++ + + M + E+ F+ + ILV +
Sbjct: 76 LVKQ--TLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFS 124
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 78.7 bits (193), Expect = 5e-18
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Query: 47 AEELANSLTVKEYDVLLLHGD--------MDQSERNSVITKFKRQECRILVATDVAARGL 98
A+++ N L G + Q E+ ++ +F R E +LVAT V GL
Sbjct: 374 AKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGL 433
Query: 99 DIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDKDGEL 147
D+P + VV Y+ R GRTGR G L+ +D
Sbjct: 434 DVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDEAY 481
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 55.7 bits (133), Expect = 4e-10
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 67 DMDQSERNSVITKFKRQ-ECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRT 125
M + V+ F+ + IL+AT VA G+DI V+ Y+ ++ GR
Sbjct: 434 GMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR- 492
Query: 126 GRAGNKGVAYTLVTDKDKDGELRS 149
GRA + + L + D + ++
Sbjct: 493 GRARD-SKCFLLTSSADVIEKEKA 515
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 55.7 bits (133), Expect = 5e-10
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 65 HGDMDQSERNSVITKFKRQE-CRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIG 123
M + V+ FK + R+L+AT VA G+DI VV Y+ + ++ G
Sbjct: 674 TTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRG 733
Query: 124 RTGRAGNKGVAYTLVTDKDKDGE 146
R GRA G LVT K + E
Sbjct: 734 R-GRA--AGSKCILVTSKTEVVE 753
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 55.3 bits (132), Expect = 6e-10
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 65 HGDMDQSERNSVITKFKRQE-CRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIG 123
M + V+ FK + R+L+AT VA G+DI VV Y+ + ++ G
Sbjct: 433 TTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRG 492
Query: 124 RTGRAGNKGVAYTLVTDKDKDGELRSQ 150
R GRA + + E ++
Sbjct: 493 R-GRAAGSKCILVTSKTEVVENEKCNR 518
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 55.0 bits (131), Expect = 9e-10
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 65 HGDMDQSERNSVITKFKRQ-ECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIG 123
+ M + ++ FK + IL+AT VA G+DI V+ Y+ ++ G
Sbjct: 441 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 500
Query: 124 RTGRAGNKGVAYTLVTDKDKDGELRSQ 150
R GRA + E +
Sbjct: 501 R-GRARGSKCFLLTSNAGVIEKEQINM 526
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 54.7 bits (131), Expect = 1e-09
Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Query: 47 AEELANSLTVKE-YDVLLLHGDMDQSERNSVITKFKRQE--CRILVATDVAARGLDIPHI 103
A +L L +E + H M ER+ F ++ ++L+ +++ + G +
Sbjct: 516 ALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFA 575
Query: 104 RTVVNYDLARDIDTHTHRIGRTGRAGNKG--VAYTLVTDKDKDGELR 148
+V +DL + D RIGR R G + +K L
Sbjct: 576 SHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLV 622
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 53.1 bits (126), Expect = 5e-09
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 65 HGDMDQSERNSVITKFKRQE-CRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIG 123
M + V+ FK + R+L+AT VA G+DI VV Y+ + ++ G
Sbjct: 674 TTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRG 733
Query: 124 RTGRAGNKGVAYTLVTDKDKDGE 146
R GRA G LVT K + E
Sbjct: 734 R-GRA--AGSKCILVTSKTEVVE 753
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding,
hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43
c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 51.7 bits (125), Expect = 1e-08
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVA-ARGLDIPHIRTV 106
E+ A L K H ++ + R V KF+R + +I+VAT VA G++ P++R V
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT-VAFGMGINKPNVRFV 308
Query: 107 VNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDKD 142
V++D+ R+I+++ GR GR G A D
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD 344
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 51.2 bits (122), Expect = 2e-08
Identities = 23/116 (19%), Positives = 37/116 (31%), Gaps = 29/116 (25%)
Query: 41 LAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDI 100
+ +ELA L+ + + + +D S I ++VATD G
Sbjct: 403 CHSKKKCDELAAKLSGLGINAVAYYRGLDVSV----IPTIGD---VVVVATDALMTGYTG 455
Query: 101 PHIRTVV------------NYDLARDIDTHT---------HRIGRTGRAGNKGVAY 135
+V+ + D I+T T R GRTGR +
Sbjct: 456 -DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRF 510
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 49.4 bits (118), Expect = 6e-08
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 17/94 (18%)
Query: 57 KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDID 116
K + + + + ER ++ F+ R +V++ V G+D+P V I
Sbjct: 367 KVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGV-------IM 419
Query: 117 THTH-------RIGRTGRAG-NKGVA--YTLVTD 140
+ + R+GR R K A Y L++
Sbjct: 420 SGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A
{Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19
c.37.1.19
Length = 780
Score = 49.5 bits (119), Expect = 6e-08
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 42 AMQL-NAEELANSLTV---KEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
+ + +A E+ L+ E+ + L+HG + Q E++ V+ +F ILV+T V G
Sbjct: 593 KLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVG 652
Query: 98 LDIP 101
+D+P
Sbjct: 653 IDVP 656
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 49.2 bits (118), Expect = 7e-08
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 46 NAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVA-ARGLDIPHIR 104
++E++ SL H +++ ++ +V K+ E +++VAT VA G+D P +R
Sbjct: 279 DSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT-VAFGMGIDKPDVR 337
Query: 105 TVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTL 137
V+++ +++ ++ + GR GR K
Sbjct: 338 FVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant
helicase, T4-bacteriophage, recombination, hydrolase;
2.70A {Enterobacteria phage T4}
Length = 510
Score = 44.5 bits (104), Expect = 3e-06
Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVAT-DVAARGLDIPHIRT 105
+ + + + + V + G++D RN + T + + I+VA+ V + G+ + ++
Sbjct: 360 GKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHH 419
Query: 106 VVNYDLARDIDTHTHRIGRTGR 127
VV + IGR R
Sbjct: 420 VVLAHGVKSKIIVLQTIGRVLR 441
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 44.6 bits (105), Expect = 4e-06
Identities = 21/129 (16%), Positives = 33/129 (25%), Gaps = 26/129 (20%)
Query: 41 LAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDI 100
+ ++AN L V+ L +E K K + +V TD++ G +
Sbjct: 362 VPSIKAGNDIANCLRKSGKRVIQLSRKTFDTE----YPKTKLTDWDFVVTTDISEMGANF 417
Query: 101 PHIRTVVNYDLAR------DIDTHT--------------HRIGRTGRAGNKGVAYTLVTD 140
V++ D R GR GR V
Sbjct: 418 -RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA-QEDDQYVFS 475
Query: 141 KDKDGELRS 149
D
Sbjct: 476 GDPLKNDED 484
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 44.4 bits (105), Expect = 4e-06
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 61 VLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVVNYDLARDIDTHTH 120
H + +R V F+R +++VAT A G+++P R V+ L R D ++
Sbjct: 299 AAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLP-ARRVIVRSLYR-FDGYSK 356
Query: 121 RI---------GRTGRAG--NKGVAYTLVTDKDKDGELR 148
RI GR GR G +G A +V +D++ ++
Sbjct: 357 RIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVK 395
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 42.9 bits (101), Expect = 1e-05
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 25/108 (23%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
+A SL V++L+ + E K+++ ++ATD+A G ++ + V+
Sbjct: 191 NVMAASLRKAGKSVVVLNRKTFERE----YPTIKQKKPDFILATDIAEMGANLC-VERVL 245
Query: 108 NYDLAR--DIDTHTH-----------------RIGRTGRAGNK-GVAY 135
+ A + R GR GR N+ G +Y
Sbjct: 246 DCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSY 293
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 42.1 bits (99), Expect = 2e-05
Identities = 21/129 (16%), Positives = 33/129 (25%), Gaps = 26/129 (20%)
Query: 41 LAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDI 100
+ ++AN L V+ L +E K K + +V TD++ G +
Sbjct: 195 VPSIKAGNDIANCLRKSGKRVIQLSRKTFDTE----YPKTKLTDWDFVVTTDISEMGANF 250
Query: 101 PHIRTVVNYDLAR------DIDTHT--------------HRIGRTGRAGNKGVAYTLVTD 140
V++ D R GR GR V
Sbjct: 251 R-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNP-AQEDDQYVFS 308
Query: 141 KDKDGELRS 149
D
Sbjct: 309 GDPLKNDED 317
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 42.1 bits (99), Expect = 3e-05
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 15/122 (12%)
Query: 38 LMNLAMQLNAEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARG 97
+L E+LA ++ V H + + ER V F++ + +VAT + G
Sbjct: 277 ADSLEENPTNEKLAKAI---RGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAG 333
Query: 98 LDIPHIRTVVNYDLA-------RDIDTHTHR--IGRTGRAG--NKGVAYTLVTDKDKDGE 146
++ P V+ D+ I +GR GR G + T D
Sbjct: 334 INTP-AFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREV 392
Query: 147 LR 148
+
Sbjct: 393 MN 394
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 39.0 bits (91), Expect = 2e-04
Identities = 24/117 (20%), Positives = 37/117 (31%), Gaps = 23/117 (19%)
Query: 48 EELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
E+ L VL L+ +SE K K ++ ++ TD++ G + V+
Sbjct: 185 AEIGTCLQKAGKKVLYLNRKTFESE----YPKCKSEKWDFVITTDISEMGANF-KADRVI 239
Query: 108 ---------NYDLARDIDTHT--------HRIGRTGRAGNK-GVAYTLVTDKDKDGE 146
D + R GR GR K G Y + D E
Sbjct: 240 DPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYSGNVSSDNE 296
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase,
hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP:
b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19
d.315.1.1
Length = 1151
Score = 37.7 bits (88), Expect = 7e-04
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 48 EELANSLT--VKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRT 105
++ A L V E + + HG M + E V+ F Q +LV T + G+DIP T
Sbjct: 826 QKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 885
Query: 106 VVNYD-----LARDIDTHTHRIGRTGRAGNKGVAYTLVTDKDK 143
++ LA+ H R GR GR+ ++ A+ L+T K
Sbjct: 886 IIIERADHFGLAQ---LHQLR-GRVGRSHHQAYAW-LLTPHPK 923
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.003
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 23 LVRNLEGANQEVPPALMNLAMQLNA--EELANSLTVKEYDVLLLHGDMDQSERNSVITKF 80
L+ ++ N+ +++++ EL L K Y+ LL + + F
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAF 262
Query: 81 KRQECRILVAT 91
C+IL+ T
Sbjct: 263 NLS-CKILLTT 272
Score = 30.6 bits (68), Expect = 0.19
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 10 TLVTDKDKEFAGHLVRNLEGANQEVPPALMNLAMQLNAEE----LANSLTVKEYD 60
L+T + K+ V + A +L + +M L +E L L + D
Sbjct: 268 ILLTTRFKQ-----VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Score = 27.1 bits (59), Expect = 2.9
Identities = 11/68 (16%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 56 VKEYDVLLLHGDMDQSERNSVITK-FKRQECRI-LVATDVAARGLDIP--HIRTVVNYDL 111
V + DV+++ +++ + S++ K K I + ++ + + H V +Y++
Sbjct: 399 VIKSDVMVV---VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 112 ARDIDTHT 119
+ D+
Sbjct: 456 PKTFDSDD 463
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.003
Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 38/124 (30%)
Query: 27 LEGANQEVPPALMNLAMQLNAEELANSLTVKEYDVLLLHG-DMDQSERNSVITKFKRQEC 85
L A+ + L+ + NA+++ + V YD G D+ + S+ +
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQ--IPV--YDT--FDGSDL-RVLSGSISERIVDCII 484
Query: 86 RILV----ATDVAARGLDIPHIRTVVNYDLARDIDTHTHRIGRTGRAGNKGVAYTLVTDK 141
R+ V T A HI +D G G G+ ++T +
Sbjct: 485 RLPVKWETTTQFKA-----THI-----------LD--------FGPGGASGLG--VLTHR 518
Query: 142 DKDG 145
+KDG
Sbjct: 519 NKDG 522
Score = 30.4 bits (68), Expect = 0.21
Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 51/122 (41%)
Query: 12 VTDKDKEFAGH-LVRNLEG---ANQEVPPALMNLAMQLNAEELANSLTVKEYDVL-LLH- 65
+ D FAGH L G A LA + LA+ ++++ ++ ++
Sbjct: 1752 LIPADATFAGHSL-----GEYAA----------LA----S--LADVMSIE--SLVEVVFY 1788
Query: 66 -GDMDQS--ER---------------NSVITKFKRQECRILVATDVAARGLDIPHIRTVV 107
G Q R V F ++ + +V G + +V
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV----EIV 1844
Query: 108 NY 109
NY
Sbjct: 1845 NY 1846
Score = 26.9 bits (59), Expect = 2.9
Identities = 28/152 (18%), Positives = 42/152 (27%), Gaps = 62/152 (40%)
Query: 34 VPPALMNLAMQLNAE----------------------ELA-----------NSLTVKEYD 60
VP A +A QL + EL V ++D
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 61 VLLLHGDMDQSERNSVITKFKRQECRILVATDV--AARGLDIPHIRTVV-------NYDL 111
+L N +T+F E L D+ A L + T+V NY
Sbjct: 82 QVL----------NLCLTEF---ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 112 ARDI------DTHTHRIGRTGRAGNKGVAYTL 137
AR + + R GN + +
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQL-VAI 159
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 35.5 bits (82), Expect = 0.005
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 65 HGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTVV----------NYDLARD 114
H + ++ R+ + F++++ +++VAT A G+++P RTV+ +
Sbjct: 319 HAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLP-ARTVIIGDIYRFNKKIAGYYDE 377
Query: 115 IDTHTHR--IGRTGRAG--NKGVAYTLVTDKDKDGEL 147
I ++ GR GR G G + +V DK+ +
Sbjct: 378 IPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRV 414
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 34.4 bits (79), Expect = 0.009
Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 26/119 (21%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFKRQECRILVATDVAARGLDIPHIRTV 106
E+A L V+ L+ +E K K + ++ TD++ G + V
Sbjct: 203 GNEIAMCLQRAGKKVIQLNRKSYDTE----YPKCKNGDWDFVITTDISEMGANFG-ASRV 257
Query: 107 V-----------NYDLARDIDTHTHRI---------GRTGRAGNK-GVAYTLVTDKDKD 144
+ R I + I GR GR N+ G Y +D
Sbjct: 258 IDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGATSED 316
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 34.4 bits (78), Expect = 0.011
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 20/125 (16%)
Query: 42 AMQLNAEELANSLTVKEYDVLLLHG------DMDQSERNSVITKFKRQECRILVATDVAA 95
A+ L E +K LL G + + + F+ ++L AT+ +
Sbjct: 482 AIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFS 541
Query: 96 RGLDIPHIRTVVNYDLARDIDTHTHR----------IGRTGRAG--NKGVAYTLVTDKDK 143
GL++P +TVV + + D R GR GR G ++G+ ++ +K +
Sbjct: 542 IGLNMP-AKTVVFTSVRK-WDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKME 599
Query: 144 DGELR 148
+
Sbjct: 600 PQVAK 604
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 34.4 bits (78), Expect = 0.012
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 20/125 (16%)
Query: 42 AMQLNAEELANSLTVKEYDVLLLHG------DMDQSERNSVITKFKRQECRILVATDVAA 95
A+ L E +K LL G + + + F+ ++L AT+ +
Sbjct: 384 AIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFS 443
Query: 96 RGLDIPHIRTVVNYDLARDIDTHTHR----------IGRTGRAG--NKGVAYTLVTDKDK 143
GL++P +TVV + + D R GR GR G ++G+ ++ +K +
Sbjct: 444 IGLNMP-AKTVVFTSVRK-WDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKME 501
Query: 144 DGELR 148
+
Sbjct: 502 PQVAK 506
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 30.4 bits (69), Expect = 0.22
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 71 SERNSVITKFKRQECRILVAT----DVAARGLDIPH-IRTVV 107
+ + KF E L+ T RGLD+P IR V
Sbjct: 306 ATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAV 347
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP;
1.65A {Bacillus circulans}
Length = 428
Score = 28.3 bits (64), Expect = 1.1
Identities = 4/23 (17%), Positives = 8/23 (34%), Gaps = 2/23 (8%)
Query: 114 DIDTHTHRIGRTGRAGNK-GVAY 135
D + I + G + G+
Sbjct: 142 DKSFGSTAI-KMGGVPRQFGMDE 163
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp
loader, DNA replication, AAA+ ATPase, transferase; HET:
DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Length = 140
Score = 26.9 bits (59), Expect = 1.8
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 43 MQLNAEELANSLTVKEYDVLLLHGD 67
++L E+L L LL G+
Sbjct: 2 IRLYPEQLRAQLNEGLRAAYLLLGN 26
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 3.0
Identities = 6/34 (17%), Positives = 16/34 (47%), Gaps = 12/34 (35%)
Query: 24 VRNLEGANQEVPPALMNLAMQLNAEELANSLTVK 57
++ L+ + ++L A++ A +L +K
Sbjct: 22 LKKLQAS------------LKLYADDSAPALAIK 43
>3h1t_A Type I site-specific restriction-modification system, R
(restriction) subunit; hydrolase, restriction enzyme
HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Length = 590
Score = 26.7 bits (59), Expect = 3.7
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 13/79 (16%)
Query: 47 AEELANSLTVKEYDVLLLHGDM-------DQSERNSVITKFKRQEC---RILVATDVAAR 96
A+E+ +L D+ H D + +++F+ E IL + +
Sbjct: 452 ADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQLLTT 511
Query: 97 GLDIPHIRTVVNYDLARDI 115
G+D P + VV LAR +
Sbjct: 512 GVDAPTCKNVV---LARVV 527
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine
biosynthesis, structural genomics, NYSGXRC, PSI; HET:
LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP:
b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Length = 434
Score = 26.3 bits (59), Expect = 4.7
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 114 DIDTHTHRIGRTGRAGNK-GVAY 135
+++ TH TG NK G+
Sbjct: 162 NVNPKTHPKISTGLKKNKFGLDV 184
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase,
nucleotide excision repair,; 2.20A {Thermoplasma
acidophilum} PDB: 2vsf_A*
Length = 620
Score = 26.2 bits (58), Expect = 5.7
Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 58 EYDVLLLHGDMDQSERNSVITKFKRQECRIL-VATDVAARGLDIPH--IRTVV 107
++ + + +DQ E S++ KF+R I V+ + G++ P + ++
Sbjct: 469 SFEHMKEYRGIDQKELYSMLKKFRRDHGTIFAVSGGRLSEGINFPGNELEMII 521
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center
for structural genomics of infectious diseases, CSGI;
1.80A {Vibrio cholerae}
Length = 441
Score = 26.0 bits (58), Expect = 6.4
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 114 DIDTHTHRIGRTGRAGNK-GVAY 135
D+D TH TG NK G+ +
Sbjct: 178 DVDAKTHPYISTGLRDNKFGITF 200
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR
domain, TLRS adaptor, immune system; 2.40A {Homo
sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Length = 146
Score = 25.0 bits (55), Expect = 7.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 13 TDKDKEFAGHLVRNLEGAN 31
+++D A LV LEG+
Sbjct: 18 SEEDLVAAQDLVSYLEGST 36
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing,
translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB:
2j3m_A*
Length = 572
Score = 25.6 bits (57), Expect = 8.2
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 47 AEELANSLTVKEYDVLLLHGDMDQSERNSVITKFK 81
++E+ +T Y+VL+ D D++ER V KF
Sbjct: 489 SQEVEAMMTEAGYEVLV---D-DRNERAGV--KFA 517
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.373
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,238,404
Number of extensions: 129424
Number of successful extensions: 472
Number of sequences better than 10.0: 1
Number of HSP's gapped: 448
Number of HSP's successfully gapped: 103
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.9 bits)