BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17638
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 30 GSSAFYLKWVKPEQPNGVLMGYKIK-YQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP 88
G ++ L W +PEQPNG+++ Y+IK Y+ K + L+ + TT A ++GL+P
Sbjct: 23 GQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAV-------TTRATVSGLKP 75
Query: 89 STKYRIHLAGYTKAGDG 105
T+Y + T AG G
Sbjct: 76 GTRYVFQVRARTSAGCG 92
>pdb|2DJS|A Chain A, Solution Structures Of The Fn3 Domain Of Human Ephrin
Type- B Receptor 1
Length = 108
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 20 TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT 79
TV + + + L W +PEQPNG+++ Y+I+Y + + + R T
Sbjct: 10 TVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMAR------SQTN 63
Query: 80 SAKLAGLEPSTKYRIHLAGYTKAGDG 105
+A++ GL P Y + + T AG G
Sbjct: 64 TARIDGLRPGMVYVVQVRARTVAGYG 89
>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 134
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 22 QSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTT- 78
Q + + +GS+ + WV P + NGV+ Y + Y++V G +R ++ D +
Sbjct: 23 QKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGE------DRGRHVVDGISR 76
Query: 79 --TSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+S L GLE T+YR+ + +T G G
Sbjct: 77 EHSSWDLVGLEKWTEYRVWVRAHTDVGPG 105
>pdb|2DLH|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
Receptor-Type Tyrosine-Protein Phosphatase Delta
Length = 121
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 24 LEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKL 83
++A L S+ ++W +PE+PNG + GY++ Y V ++ ++D T+ +
Sbjct: 25 VQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKH--NVADSQITT--I 80
Query: 84 AGLEPSTKYRIHLAGYTKAGDG 105
L P Y + + +T GDG
Sbjct: 81 GNLVPQKTYSVKVLAFTSIGDG 102
>pdb|1WFN|A Chain A, The Fourth Fn3 Domain Of Human Sidekick-2
Length = 119
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
VPG V L + ++ + W +P + NG+L GY+I ++ T R+ +
Sbjct: 17 VPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNT-----RVTHYLPN 71
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
T ++ GL T Y I +A T G G
Sbjct: 72 VTLEYRVTGLTALTTYTIEVAAMTSKGQG 100
>pdb|1QG3|A Chain A, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
pdb|1QG3|B Chain B, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
Length = 195
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 19 GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTT 78
G Q+ A GS + W+ P +G MGY++KY ++G E ++ D
Sbjct: 3 GAPQNPNAKAAGSRKIHFNWLPP---SGKPMGYRVKYW-IQGDS-----ESEAHLLDSKV 53
Query: 79 TSAKLAGLEPSTKYRIHLAGYTKAGDGA-DYFIEHRTRGTDNVAPGKPNFKLVRS 132
S +L L P Y + + Y G+G + RT PG+ F +V S
Sbjct: 54 PSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSS 108
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 29 LGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK--VGPLLERLPYISDPTTTSAKLAGL 86
+ S+ L W +P + NG + Y++ Y V +GP+ + L + +P + L
Sbjct: 106 VSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVL--VDNPKNRMLLIENL 163
Query: 87 EPSTKYRIHLAGYTKAGDG 105
S YR + AG G
Sbjct: 164 RESQPYRYTVKARNGAGWG 182
>pdb|3F7Q|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
pdb|3F7Q|B Chain B, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 234
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 19 GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTT 78
G Q+ A GS + W+ P +G MGY++KY ++G E ++ D
Sbjct: 7 GAPQNPNAKAAGSRKIHFNWLPP---SGKPMGYRVKYW-IQGDS-----ESEAHLLDSKV 57
Query: 79 TSAKLAGLEPSTKYRIHLAGYTKAGDGA-DYFIEHRTRGTDNVAPGKPNFKLVRS 132
S +L L P Y + + Y G+G + RT PG+ F +V S
Sbjct: 58 PSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSS 112
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 29 LGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK--VGPLLERLPYISDPTTTSAKLAGL 86
+ S+ L W +P + NG + Y++ Y V +GP+ + L + +P + L
Sbjct: 110 VSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVL--VDNPKNRMLLIENL 167
Query: 87 EPSTKYRIHLAGYTKAGDG 105
S YR + AG G
Sbjct: 168 RESQPYRYTVKARNGAGWG 186
>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 249
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 19 GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTT 78
G Q+ A GS + W+ P +G MGY++KY ++G E ++ D
Sbjct: 7 GAPQNPNAKAAGSRKIHFNWLPP---SGKPMGYRVKYW-IQGDS-----ESEAHLLDSKV 57
Query: 79 TSAKLAGLEPSTKYRIHLAGYTKAGDGA-DYFIEHRTRGTDNVAPGKPNFKLVRS 132
S +L L P Y + + Y G+G + RT PG+ F +V S
Sbjct: 58 PSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSS 112
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 29 LGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK--VGPLLERLPYISDPTTTSAKLAGL 86
+ S+ L W +P + NG + Y++ Y V +GP+ + L + +P + L
Sbjct: 110 VSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVL--VDNPKNRMLLIENL 167
Query: 87 EPSTKYRIHLAGYTKAGDG 105
S YR + AG G
Sbjct: 168 RESQPYRYTVKARNGAGWG 186
>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|D Chain D, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|E Chain E, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 248
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 19 GTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTT 78
G Q+ A GS + W+ P +G MGY++KY ++G E ++ D
Sbjct: 6 GAPQNPNAKAAGSRKIHFNWLPP---SGKPMGYRVKYW-IQGDS-----ESEAHLLDSKV 56
Query: 79 TSAKLAGLEPSTKYRIHLAGYTKAGDGA-DYFIEHRTRGTDNVAPGKPNFKLVRS 132
S +L L P Y + + Y G+G + RT PG+ F +V S
Sbjct: 57 PSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSS 111
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 29 LGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK--VGPLLERLPYISDPTTTSAKLAGL 86
+ S+ L W +P + NG + Y++ Y V +GP+ + L + +P + L
Sbjct: 109 VSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVL--VDNPKNRMLLIENL 166
Query: 87 EPSTKYRIHLAGYTKAGDG 105
S YR + AG G
Sbjct: 167 RESQPYRYTVKARNGAGWG 185
>pdb|2E7H|A Chain A, Solution Structure Of The Second Fn3 Domain From Human
Ephrin Type-B Receptor 4
Length = 109
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 32 SAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTK 91
S+ L W P P+G ++ Y++KY KG + GP R S+ A+L GL+
Sbjct: 22 SSLSLAWAVPRAPSGAVLDYEVKYHE-KGAE-GPSSVRFLKTSE---NRAELRGLKRGAS 76
Query: 92 YRIHLAGYTKAGDG 105
Y + + ++AG G
Sbjct: 77 YLVQVRARSEAGYG 90
>pdb|2EDY|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 103
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 22 QSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT 79
Q+L L +S L W P + NG ++ Y + ++ + + L I+ T T
Sbjct: 13 QNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQ------QELQNIT--TDT 64
Query: 80 SAKLAGLEPSTKYRIHLAGYTKAGDG 105
L GL+P T Y I + +T G G
Sbjct: 65 RFTLTGLKPDTTYDIKVRAWTSKGSG 90
>pdb|2EDB|A Chain A, Solution Structure Of The Fourth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 116
Score = 33.5 bits (75), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Query: 14 EALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVG-PLLERLPY 72
E+ VP SL P ++ + W P PN V+ GY I Y VG P E +
Sbjct: 14 ESQVPDQPSSLHVRPQ-TNCIIMSWTPPLNPNIVVRGYIIGY------GVGSPYAETVRV 66
Query: 73 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTR 115
D + LE S+ Y I L + AG+G + TR
Sbjct: 67 --DSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTR 107
>pdb|1FNF|A Chain A, Fragment Of Human Fibronectin Encompassing Type-Iii
Repeats 7 Through 10
Length = 368
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 16/145 (11%)
Query: 16 LVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISD 75
L P T LEA P + + W + P+ + GY+I G + G LE + +
Sbjct: 2 LSPPTNLHLEANP-DTGVLTVSWERSTTPD--ITGYRITTTPTNGQQ-GNSLEEVVHADQ 57
Query: 76 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTE 135
+S L P +Y + + YT D I +D + P P +R T
Sbjct: 58 ---SSCTFDNLSPGLEYNVSV--YTVKDDKESVPI------SDTIIPAVPPPTDLR-FTN 105
Query: 136 NGYGAFKVIWEPNPERPGSHFFVKY 160
G +V W P P ++F V+Y
Sbjct: 106 IGPDTMRVTWAPPPSIDLTNFLVRY 130
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 9 LTLNLEALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLE 68
L + ++ V + LE + ++ + W + P + Y+I Y G P+ E
Sbjct: 267 LLIGQQSTVSDVPRDLEVVAATPTSLLISW---DAPAVTVRYYRITYGETGGNS--PVQE 321
Query: 69 RLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ + ++A ++GL+P Y I + T GD
Sbjct: 322 ---FTVPGSKSTATISGLKPGVDYTITVYAVTGRGDS 355
>pdb|1WFO|A Chain A, The Eighth Fn3 Domain Of Human Sidekick-2
Length = 130
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 31 SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPST 90
+++ L W P PNG+++ Y+I ++ T +E L P+ GL+P +
Sbjct: 41 TTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVL----APSARQYTATGLKPES 96
Query: 91 KYRIHLAGYTKAGDG 105
Y + T+ G G
Sbjct: 97 VYLFRITAQTRKGWG 111
>pdb|1X5I|A Chain A, The Solution Structure Of The Fourth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 126
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 22/109 (20%)
Query: 14 EALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKY-------QSVKGTKVGPL 66
E VP SL PL +S + W PE N V+ GY I Y Q++K
Sbjct: 24 ETRVPEVPSSLHVRPLVTS-IVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIK------- 75
Query: 67 LERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTR 115
D + L+PS+ Y I L + G+G + TR
Sbjct: 76 -------VDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTR 117
>pdb|4GH7|B Chain B, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
pdb|4GH7|D Chain D, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
Length = 285
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 24/152 (15%)
Query: 14 EALVPGTVQ--SLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP 71
+ ++P Q L + + S+ L+W + ++GY+I + E +P
Sbjct: 90 DTIIPEVPQLTDLSFVDITDSSIGLRWTPLN--SSTIIGYRITVVAAG--------EGIP 139
Query: 72 YISDPTTTSA---KLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFK 128
D +S + GLEP Y I + G+ A + +T P + +
Sbjct: 140 IFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQT-----AVPPPTDLR 194
Query: 129 LVRSGTENGYGAFKVIWEPNPERPGSHFFVKY 160
T G +V W P P ++F V+Y
Sbjct: 195 F----TNIGPDTMRVTWAPPPSIDLTNFLVRY 222
>pdb|2ED8|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 106
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 21 VQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVK-GTKVGPLLERLPYISDPTTT 79
V++L+A+ ++ + W P NG + GY++ V G + ++ L Y
Sbjct: 11 VENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDGLSY------- 63
Query: 80 SAKLAGLEPSTKYRIHLAGYTKAGDGA 106
KL GL+ T+Y + Y + G G
Sbjct: 64 --KLEGLKKFTEYSLRFLAYNRYGPGV 88
>pdb|1X5G|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Neogenin
Length = 116
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 14 EALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 73
E +PG +L A ++ + W P NG + YK+ Y KGT +
Sbjct: 14 EVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYME-KGTDKEQDV------ 66
Query: 74 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
D ++ S + GL+ T+Y + Y K G G
Sbjct: 67 -DVSSHSYTINGLKKYTEYSFRVVAYNKHGPG 97
>pdb|3T1W|A Chain A, Structure Of The Four-Domain Fragment Fn7b89 Of Oncofetal
Fibronectin
Length = 375
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 24/152 (15%)
Query: 14 EALVPGTVQ--SLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP 71
+ ++P Q L + + S+ L+W + ++GY+I + E +P
Sbjct: 90 DTIIPEVPQLTDLSFVDITDSSIGLRWTPLN--SSTIIGYRITVVAAG--------EGIP 139
Query: 72 YISDPTTTSA---KLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFK 128
D +S + GLEP Y I + G+ A + +T P + +
Sbjct: 140 IFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQT-----AVPPPTDLR 194
Query: 129 LVRSGTENGYGAFKVIWEPNPERPGSHFFVKY 160
T G +V W P P ++F V+Y
Sbjct: 195 F----TNIGPDTMRVTWAPPPSIDLTNFLVRY 222
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 31.2 bits (69), Expect = 0.28, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 31 SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPST 90
++ +L W +P++PNG+++ Y++ Y+ ++ R + + +L GL P
Sbjct: 806 NNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALE---RGCRLRGLSPGN 862
Query: 91 KYRIHLAGYTKAGDGA 106
Y + + + AG+G+
Sbjct: 863 -YSVRIRATSLAGNGS 877
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 22 QSLEAIPLGSSAFYLKWV--KPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT 79
Q+L S + + W P NG + GYKI+Y+ K ++ + E L T
Sbjct: 23 QNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYR--KASRKSDVTETL---VSGTQL 77
Query: 80 SAKLAGLEPSTKYRIHLAGYTKAGDG 105
S + GL+ T+Y +A T G G
Sbjct: 78 SQLIEGLDRGTEYNFRVAALTINGTG 103
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 30.8 bits (68), Expect = 0.33, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 31 SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPST 90
++ +L W +P++PNG+++ Y++ Y+ ++ R + + +L GL P
Sbjct: 825 NNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALE---RGCRLRGLSPGN 881
Query: 91 KYRIHLAGYTKAGDGA 106
Y + + + AG+G+
Sbjct: 882 -YSVRIRATSLAGNGS 896
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 31 SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA-KLAGLEPS 89
SS L W P + +++ Y I+Y+ TK ++P +T S+ + L+P
Sbjct: 214 SSILKLTWTNPSIKSVIILKYNIQYR----TKDASTWSQIPPEDTASTRSSFTVQDLKPF 269
Query: 90 TKYRIHLAGYTKAGDG--ADYFIEHRTRGTDNVAPGKPNF--KLVRSGTENGYGAFKVIW 145
T+Y + + G G +D+ E ++ P+F K+ S T+ GY +++W
Sbjct: 270 TEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQ-GYRTVQLVW 328
Query: 146 EPNP 149
+ P
Sbjct: 329 KTLP 332
>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2
Protein
Length = 121
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 33 AFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKY 92
A L W KP N L+ Y ++ P L + DP TS + GL P+ Y
Sbjct: 35 AINLTWTKPFDGNSPLIRYILEMSENNA----PWTVLLASV-DPKATSVTVKGLVPARSY 89
Query: 93 RIHLAGYTKAGDG 105
+ L G G
Sbjct: 90 QFRLCAVNDVGKG 102
>pdb|2DN7|A Chain A, Solution Structures Of The 6th Fn3 Domain Of Human
Receptor- Type Tyrosine-Protein Phosphatase F
Length = 107
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 36 LKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH 95
L+W P++ G L+GY+++Y + + P + + D + + GL T Y
Sbjct: 25 LQWHPPKELPGELLGYRLQY--CRADEARP--NTIDFGKDDQHFT--VTGLHKGTTYIFR 78
Query: 96 LAGYTKAGDGADYFIEHRT 114
LA +AG G ++ E RT
Sbjct: 79 LAAKNRAGLGEEFEKEIRT 97
>pdb|2GEE|A Chain A, Crystal Structure Of Human Type Iii Fibronectin
Extradomain B And Domain 8
Length = 203
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 22/140 (15%)
Query: 24 LEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA-- 81
L + + S+ L+W + ++GY+I + E +P D +S
Sbjct: 29 LSFVDITDSSIGLRWTPLN--SSTIIGYRITVVAAG--------EGIPIFEDFVDSSVGY 78
Query: 82 -KLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTENGYGA 140
+ GLEP Y I + G+ + +T P + + T G
Sbjct: 79 YTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQT-----AVPPPTDLRF----TNIGPDT 129
Query: 141 FKVIWEPNPERPGSHFFVKY 160
+V W P P ++F V+Y
Sbjct: 130 MRVTWAPPPSIDLTNFLVRY 149
>pdb|3CE9|A Chain A, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
pdb|3CE9|B Chain B, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
pdb|3CE9|C Chain C, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
pdb|3CE9|D Chain D, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
Length = 354
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 12 NLEALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP 71
N+E TV++++ +G++AF + P + + L+G +++ K L +LP
Sbjct: 61 NIEIEAVETVKNIDFDEIGTNAFKI----PAEVDA-LIGIG-GGKAIDAVKYXAFLRKLP 114
Query: 72 YISDPTTTS 80
+IS PT+TS
Sbjct: 115 FISVPTSTS 123
>pdb|1CCD|A Chain A, Refined Structure Of Rat Clara Cell 17 Kda Protein At
3.0 Angstroms Resolution
Length = 77
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 16 LVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP 71
+ PG +Q LEA+ LGS + Y +KP P L GT++ L++ LP
Sbjct: 4 ICPGFLQVLEALLLGSESNYEAALKPFNPASDLQN--------AGTQLKRLVDTLP 51
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 20/131 (15%)
Query: 9 LTLNLEALVPGTV--QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPL 66
L + + +PG V +S++ F L+W +P Q GV+ Y+I Y++V + P
Sbjct: 453 LIVQTDEDLPGAVPTESIQGSTFEEKIF-LQWREPTQTYGVITLYEITYKAV--SSFDPE 509
Query: 67 LERLPYISDPTTTSAKLA--------GLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTD 118
++ +S+ + +KL GL P T Y + T G G + T+ +
Sbjct: 510 ID----LSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKIS- 564
Query: 119 NVAPGKPNFKL 129
AP P ++L
Sbjct: 565 --APSMPAYEL 573
>pdb|1UTR|A Chain A, Uteroglobin-Pcb Complex (Reduced Form)
pdb|1UTR|B Chain B, Uteroglobin-Pcb Complex (Reduced Form)
Length = 96
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 16 LVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP 71
+ PG +Q LEA+ LGS + Y +KP P L GT++ L++ LP
Sbjct: 23 ICPGFLQVLEALLLGSESNYEAALKPFNPASDLQN--------AGTQLKRLVDTLP 70
>pdb|1X5Z|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Protein Tyrosine Phosphatase, Receptor Type, D
Isoform 4 Variant
Length = 115
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
VPG + +A P ++ L W P + + Y++ Y K G E +P
Sbjct: 17 VPGQPLNFKAEPESETSILLSWTPPR--SDTIANYELVY------KDGEHGEEQRITIEP 68
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGA 106
TS +L GL+P++ Y LA + G GA
Sbjct: 69 -GTSYRLQGLKPNSLYYFRLAARSPQGLGA 97
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 15 ALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLPYI 73
A VP + ++ I L + + + KP+ GV + Y++ + V +++ ++
Sbjct: 193 ADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEV-ASEIWKIVR----- 246
Query: 74 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADY 108
S T L LEP+T Y I +A G G DY
Sbjct: 247 SHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQG-DY 280
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 4 SPPLWLTLNLEALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKV 63
S P+ + + P ++ L P ++ + W + P + GY IKY+ K
Sbjct: 172 SSPVVIDASTAIDAPSNLRFLATTP---NSLLVSW---QPPRARITGYIIKYE-----KP 220
Query: 64 G-PLLERLPYISDPTTTSAKLAGLEPSTKYRIHL 96
G P E +P P T A + GLEP T+Y I++
Sbjct: 221 GSPPREVVPR-PRPGVTEATITGLEPGTEYTIYV 253
>pdb|1I1R|A Chain A, Crystal Structure Of A CytokineRECEPTOR COMPLEX
Length = 303
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 31 SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERL-PYISDPTTTSAKLAGLEPS 89
SS L W P + +++ Y I+Y+ TK ++ P + T +S + L+P
Sbjct: 215 SSILKLTWTNPSIKSVIILKYNIQYR----TKDASTWSQIPPEDTASTRSSFTVQDLKPF 270
Query: 90 TKYRIHLAGYTKAGDG 105
T+Y + + G G
Sbjct: 271 TEYVFRIRCMKEDGKG 286
>pdb|1P9M|A Chain A, Crystal Structure Of The Hexameric Human Il-6/il-6 Alpha
Receptor/gp130 Complex
Length = 299
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 31 SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERL-PYISDPTTTSAKLAGLEPS 89
SS L W P + +++ Y I+Y+ TK ++ P + T +S + L+P
Sbjct: 215 SSILKLTWTNPSIKSVIILKYNIQYR----TKDASTWSQIPPEDTASTRSSFTVQDLKPF 270
Query: 90 TKYRIHLAGYTKAGDG 105
T+Y + + G G
Sbjct: 271 TEYVFRIRCMKEDGKG 286
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 4 SPPLWLTLNLEALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKV 63
S P+ + + P ++ L P ++ + W + P + GY IKY+ K
Sbjct: 191 SSPVVIDASTAIDAPSNLRFLATTP---NSLLVSW---QPPRARITGYIIKYE-----KP 239
Query: 64 G-PLLERLPYISDPTTTSAKLAGLEPSTKYRIHL 96
G P E +P P T A + GLEP T+Y I++
Sbjct: 240 GSPPREVVPR-PRPGVTEATITGLEPGTEYTIYV 272
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 15 ALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLPYI 73
A VP + ++ I L + + + KP+ GV + Y++ + V +++ ++
Sbjct: 193 ADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEV-ASEIWKIVR----- 246
Query: 74 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADY 108
S T L LEP+T Y I +A G G DY
Sbjct: 247 SHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQG-DY 280
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 36 LKWVKP-EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI 94
L W P P+G + Y + Y TK G ER+ S P + L P+T Y
Sbjct: 36 LTWRTPASDPHGDNLTYSVFY-----TKEGIARERVENTSHPGEMQVTIQNLMPATVYIF 90
Query: 95 HLAGYTKAGDG 105
+ K G G
Sbjct: 91 RVMAQNKHGSG 101
>pdb|1PVH|A Chain A, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
pdb|1PVH|C Chain C, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
Length = 201
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 31 SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA-KLAGLEPS 89
SS L W P + +++ Y I+Y+ TK ++P +T S+ + L+P
Sbjct: 115 SSILKLTWTNPSIKSVIILKYNIQYR----TKDASTWSQIPPEDTASTRSSFTVQDLKPF 170
Query: 90 TKYRIHLAGYTKAGDG 105
T+Y + + G G
Sbjct: 171 TEYVFRIRCMKEDGKG 186
>pdb|1UJT|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Kiaa1568 Protein
Length = 120
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 27 IPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGL 86
+ L + + W QP + GY++ Y+ G + + L PT SA L L
Sbjct: 25 VVLTPTTVQVTWTVDRQPQ-FIQGYRVMYRQTSGLQATSSWQNLD-AKVPTERSAVLVNL 82
Query: 87 EPSTKYRIHLAGYTKAGDGAD 107
+ Y I + Y G D
Sbjct: 83 KKGVTYEIKVRPYFNEFQGMD 103
>pdb|1DQY|A Chain A, Crystal Structure Of Antigen 85c From Mycobacterium
Tuberculosis With Diethyl Phosphate Inhibitor
Length = 283
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 30 GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS 89
G S+FY W +P Q NG Y K+++ ++ L+ +S PT +A GL S
Sbjct: 73 GQSSFYTDWYQPSQSNG--QNYTYKWETFLTREMPAWLQANKGVS-PTGNAA--VGLSMS 127
Query: 90 TKYRIHLAGY 99
+ LA Y
Sbjct: 128 GGSALILAAY 137
>pdb|3HRH|A Chain A, Crystal Structure Of Antigen 85c And Glycerol
pdb|3HRH|B Chain B, Crystal Structure Of Antigen 85c And Glycerol
Length = 303
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 30 GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS 89
G S+FY W +P Q NG Y K+++ ++ L+ +S PT +A GL S
Sbjct: 73 GQSSFYTDWYQPSQSNG--QNYTYKWETFLTREMPAWLQANKGVS-PTGNAA--VGLSMS 127
Query: 90 TKYRIHLAGY 99
+ LA Y
Sbjct: 128 GGSALILAAY 137
>pdb|1BQU|A Chain A, Cytokyne-Binding Region Of Gp130
pdb|1BQU|B Chain B, Cytokyne-Binding Region Of Gp130
Length = 215
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 31 SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA-KLAGLEPS 89
SS L W P + +++ Y I+Y+ TK ++P +T S+ + L+P
Sbjct: 119 SSILKLTWTNPSIKSVIILKYNIQYR----TKDASTWSQIPPEDTASTRSSFTVQDLKPF 174
Query: 90 TKYRIHLAGYTKAGDG 105
T+Y + + G G
Sbjct: 175 TEYVFRIRCMKEDGKG 190
>pdb|1DQZ|A Chain A, Crystal Structure Of Antigen 85c From Mycobacterium
Tuberculosis
pdb|1DQZ|B Chain B, Crystal Structure Of Antigen 85c From Mycobacterium
Tuberculosis
Length = 280
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 30 GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS 89
G S+FY W +P Q NG Y K+++ ++ L+ +S PT +A GL S
Sbjct: 70 GQSSFYTDWYQPSQSNG--QNYTYKWETFLTREMPAWLQANKGVS-PTGNAA--VGLSMS 124
Query: 90 TKYRIHLAGY 99
+ LA Y
Sbjct: 125 GGSALILAAY 134
>pdb|1VA5|A Chain A, Antigen 85c With Octylthioglucoside In Active Site
pdb|1VA5|B Chain B, Antigen 85c With Octylthioglucoside In Active Site
Length = 303
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 30 GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS 89
G S+FY W +P Q NG Y K+++ ++ L+ +S PT +A GL S
Sbjct: 73 GQSSFYTDWYQPSQSNG--QNYTYKWETFLTREMPAWLQANKGVS-PTGNAA--VGLSMS 127
Query: 90 TKYRIHLAGY 99
+ LA Y
Sbjct: 128 GGSALILAAY 137
>pdb|1BJ8|A Chain A, Third N-Terminal Domain Of Gp130, Nmr, Minimized Average
Structure
Length = 109
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 31 SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA-KLAGLEPS 89
SS L W P + +++ Y I+Y+ TK ++P +T S+ + L+P
Sbjct: 21 SSILKLTWTNPSIKSVIILKYNIQYR----TKDASTWSQIPPEDTASTRSSFTVQDLKPF 76
Query: 90 TKYRIHLAGYTKAGDG 105
T+Y + + G G
Sbjct: 77 TEYVFRIRCMKEDGKG 92
>pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|B Chain B, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|C Chain C, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|D Chain D, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2VM8|A Chain A, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|B Chain B, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|C Chain C, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|D Chain D, Human Crmp-2 Crystallised In The Presence Of Mg
Length = 501
Score = 26.6 bits (57), Expect = 6.3, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 112 HRTRGTDNVAPGKPNFKLVRSGTENGYGAFKVIWE 146
H T T A GK NF L+ GT VIW+
Sbjct: 344 HCTFNTAQKAVGKDNFTLIPEGTNGTEERMSVIWD 378
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 15 ALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLPYI 73
A VP + ++ I L + + + KP+ GV + Y++ + V +++ ++
Sbjct: 15 ADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEV-ASEIWKIVR----- 68
Query: 74 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADY 108
S T L LEP+T Y I +A G G DY
Sbjct: 69 SHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQG-DY 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,660,078
Number of Sequences: 62578
Number of extensions: 240476
Number of successful extensions: 510
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 67
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)