RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17638
(160 letters)
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 91.0 bits (226), Expect = 2e-23
Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 3/134 (2%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
VP L + S+ L W +P + NG + Y++ Y V + + +P
Sbjct: 98 VPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNP 157
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG--ADYFIEHRTR-GTDNVAPGKPNFKLVRSG 133
+ L S YR + AG G + I T+ P P+ +V +
Sbjct: 158 KNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQ 217
Query: 134 TENGYGAFKVIWEP 147
+ Y +F + +
Sbjct: 218 SGEDYDSFLMYSDD 231
Score = 63.3 bits (154), Expect = 6e-13
Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 15/140 (10%)
Query: 14 EALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 73
+ G Q+ A GS + W P+G MGY++KY + E ++
Sbjct: 2 SHMDLGAPQNPNAKAAGSRKIHFNW---LPPSGKPMGYRVKYWIQGDS------ESEAHL 52
Query: 74 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSG 133
D S +L L P Y + + Y G+G + + T P +P
Sbjct: 53 LDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGP--YSSLVSCRTHQEVPSEPGRLAFNVV 110
Query: 134 TENGYGAFKVIWEPNPERPG 153
+ ++ W P
Sbjct: 111 SST---VTQLSWAE-PAETN 126
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 86.7 bits (215), Expect = 6e-23
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
VPG V L + ++ + W +P + NG+L GY+I ++ T R+ +
Sbjct: 17 VPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTN-----TRVTHYLPN 71
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
T ++ GL T Y I +A T G G
Sbjct: 72 VTLEYRVTGLTALTTYTIEVAAMTSKGQG 100
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 82.1 bits (203), Expect = 5e-21
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
VPG + + +++ L W P PNG+++ Y+I ++ T +E L P
Sbjct: 27 VPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLA----P 82
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ GL+P + Y + T+ G G
Sbjct: 83 SARQYTATGLKPESVYLFRITAQTRKGWG 111
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 77.0 bits (190), Expect = 3e-19
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
P V + G ++ L W +PEQPNG+++ Y+IKY +
Sbjct: 10 APSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKE------MQSYSTLKA 63
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
TT A ++GL+P T+Y + T AG G
Sbjct: 64 VTTRATVSGLKPGTRYVFQVRARTSAGCG 92
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 75.4 bits (186), Expect = 1e-18
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
PG V++L+A+ ++ + W P NG + GY++ V K +
Sbjct: 7 GPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGK--------EQNIEV 58
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
S KL GL+ T+Y + Y + G G
Sbjct: 59 DGLSYKLEGLKKFTEYSLRFLAYNRYGPG 87
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 75.6 bits (186), Expect = 2e-18
Identities = 29/110 (26%), Positives = 38/110 (34%), Gaps = 9/110 (8%)
Query: 14 EALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 73
E VP SL PL +S + W PE N V+ GY I Y
Sbjct: 24 ETRVPEVPSSLHVRPLVTSI-VVSWTPPENQNIVVRGYAIGYGIGSP-------HAQTIK 75
Query: 74 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPG 123
D + L+PS+ Y I L + G+G + TR P
Sbjct: 76 VDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTR-PHTSGPS 124
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 75.1 bits (185), Expect = 2e-18
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
+PG +L A ++ + W P NG + YK+ Y K D
Sbjct: 17 LPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKE--------QDVDV 68
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGA 106
++ S + GL+ T+Y + Y K G G
Sbjct: 69 SSHSYTINGLKKYTEYSFRVVAYNKHGPGV 98
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 74.0 bits (182), Expect = 6e-18
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 17 VPGTV-QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISD 75
P + + ++A L S+ ++W +PE+PNG + GY++ Y V ++
Sbjct: 17 APSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNV---- 72
Query: 76 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ + L P Y + + +T GDG
Sbjct: 73 ADSQITTIGNLVPQKTYSVKVLAFTSIGDG 102
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 71.7 bits (176), Expect = 3e-17
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
P TV + + + L W +PEQPNG+++ Y+I+Y + E ++
Sbjct: 7 GPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHN------EFNSSMARS 60
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
T +A++ GL P Y + + T AG G
Sbjct: 61 QTNTARIDGLRPGMVYVVQVRARTVAGYG 89
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 71.6 bits (176), Expect = 7e-17
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 22 QSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT 79
Q + + +GS+ + WV P + NGV+ Y + Y++V G + +
Sbjct: 23 QKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGE---DRGRHVVDGISREHS 79
Query: 80 SAKLAGLEPSTKYRIHLAGYTKAGDG 105
S L GLE T+YR+ + +T G G
Sbjct: 80 SWDLVGLEKWTEYRVWVRAHTDVGPG 105
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 69.0 bits (169), Expect = 4e-16
Identities = 28/110 (25%), Positives = 38/110 (34%), Gaps = 9/110 (8%)
Query: 14 EALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 73
E+ VP SL P + + W P PN V+ GY I Y
Sbjct: 14 ESQVPDQPSSLHVRPQTNCI-IMSWTPPLNPNIVVRGYIIGYGVGSP-------YAETVR 65
Query: 74 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPG 123
D + LE S+ Y I L + AG+G + TR + P
Sbjct: 66 VDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTR-SITSGPS 114
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 68.9 bits (169), Expect = 7e-16
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 8/115 (6%)
Query: 22 QSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT 79
Q+L S + + W P NG + GYKI+Y+ K + + T
Sbjct: 23 QNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYR-----KASRKSDVTETLVSGTQL 77
Query: 80 SAKLAGLEPSTKYRIHLAGYTKAGDGAD-YFIEHRTRGTDNVAPGKPNFKLVRSG 133
S + GL+ T+Y +A T G G ++ T +D P SG
Sbjct: 78 SQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETRVPEVSGPSSG 132
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 67.9 bits (166), Expect = 1e-15
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
P V + S+ L W P P+G ++ Y++KY
Sbjct: 7 GPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEG-----PSSVRFLKT 61
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ A+L GL+ Y + + ++AG G
Sbjct: 62 SENRAELRGLKRGASYLVQVRARSEAGYG 90
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 70.2 bits (172), Expect = 1e-15
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 3/88 (3%)
Query: 18 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 77
P ++ + + W P + NG + GY I Y + ++ +
Sbjct: 108 PPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIE---PVVGN 164
Query: 78 TTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ ++ L T Y + G G
Sbjct: 165 RLTHQIQELTLDTPYYFKIQARNSKGMG 192
Score = 54.0 bits (130), Expect = 1e-09
Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 13/140 (9%)
Query: 18 PGTVQSLEAIPLGSSAFYLKWVKPEQP----NGVLMGYKIKYQSVKGTKVGPLLERLPYI 73
++A L + W P Y +++++
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPA------NTKYKN 58
Query: 74 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSG 133
++ TT S + GL+P+T Y + H T T + P P +
Sbjct: 59 ANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGT--TFELVPTSPPKDVTVVS 116
Query: 134 TENGYGAFKVIWEPNPERPG 153
E V W+P P
Sbjct: 117 KEGKPKTIIVNWQP-PSEAN 135
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 67.7 bits (166), Expect = 1e-15
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
VPG + +A P ++ L W P + + Y++ Y+ + + I+
Sbjct: 17 VPGQPLNFKAEPESETSILLSWTPP--RSDTIANYELVYKDGEHGEE-------QRITIE 67
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGA 106
TS +L GL+P++ Y LA + G GA
Sbjct: 68 PGTSYRLQGLKPNSLYYFRLAARSPQGLGA 97
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 66.2 bits (162), Expect = 4e-15
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 13 LEALVPGTVQSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGTKVGPLLERL 70
+ G Q+L L +S L W P + NG ++ Y + ++ + +
Sbjct: 4 GSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQ-------- 55
Query: 71 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ T T L GL+P T Y I + +T G G
Sbjct: 56 ELQNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSG 90
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 65.9 bits (161), Expect = 4e-15
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 6/92 (6%)
Query: 17 VPGTV-QSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 73
P T + + LKW + N + G+ I Y+ +
Sbjct: 3 TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRD---V 59
Query: 74 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ + + L+P T Y I + + + G+
Sbjct: 60 VEGSKQWHMIGHLQPETSYDIKMQCFNEGGES 91
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 66.2 bits (162), Expect = 5e-15
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 22 QSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT 79
Q++ + S + + W+ P NG + GYKI+++ +P
Sbjct: 33 QNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGE-------METLEPNNL 85
Query: 80 SAKLAGLEPSTKYRIHLAGYTKAGDG 105
GLE ++Y ++ T G G
Sbjct: 86 WYLFTGLEKGSQYSFQVSAMTVNGTG 111
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 65.9 bits (161), Expect = 7e-15
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 22 QSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT 79
+ P+ S + + W P E NGV+ GY+I Y+ + + +
Sbjct: 20 MDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYREN-SPGSNGQYSIVEMKATGDSE 78
Query: 80 SAKLAGLEPSTKYRIHLAGYTKAGDG 105
L L+ +Y + + + +AG G
Sbjct: 79 VYTLDNLKKFAQYGVVVQAFNRAGTG 104
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 70.0 bits (171), Expect = 7e-15
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 4 SPPLWLTLNLEALVPGTVQSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKGT 61
P + L+ P ++ +G + L+W + + NG + Y I Y+++ G
Sbjct: 482 GSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGN 541
Query: 62 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ D + T L+ L T Y + +A YT G
Sbjct: 542 ET-------AVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGK 578
Score = 53.9 bits (129), Expect = 2e-09
Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 6/141 (4%)
Query: 23 SLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAK 82
S+ SS L W P + +++ Y I+Y++ + + P + T +S
Sbjct: 206 SVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQI---PPEDTASTRSSFT 262
Query: 83 LAGLEPSTKYRIHLAGYTKAGDGAD-YFIEHRTRGTDNVAPGKP--NFKLVRSGTENGYG 139
+ L+P T+Y + + G G + E + T P K + + GY
Sbjct: 263 VQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYR 322
Query: 140 AFKVIWEPNPERPGSHFFVKY 160
+++W+ P + + Y
Sbjct: 323 TVQLVWKTLPPFEANGKILDY 343
Score = 52.7 bits (126), Expect = 6e-09
Identities = 17/146 (11%), Positives = 35/146 (23%), Gaps = 11/146 (7%)
Query: 4 SPPLWLTLNLEALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKV 63
S LT+ + +++W P + Y +++ +
Sbjct: 386 SDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEW---TTPRESVKKYILEWCVLSDKAP 442
Query: 64 GPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPG 123
+ + L S Y I + G G+ I+ +
Sbjct: 443 CITDWQ--QEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGP 500
Query: 124 KPNFKLVRSGTENGYGAFKVIWEPNP 149
K V + W+ P
Sbjct: 501 TVRTKKVGKNE------AVLEWDQLP 520
Score = 46.2 bits (109), Expect = 1e-06
Identities = 19/133 (14%), Positives = 33/133 (24%), Gaps = 19/133 (14%)
Query: 25 EAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAK 82
+ G L W + P + NG ++ Y++ K + + T + K
Sbjct: 315 PSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSH-----------LQNYTVNATK 363
Query: 83 LAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTENGYGAFK 142
L + +Y L G + D A
Sbjct: 364 LTVNLTNDRYLATLTVRNLVGKSDAAVL--TIPACDFQATHPVMDLKAFPKD----NMLW 417
Query: 143 VIWEPNPERPGSH 155
V W E +
Sbjct: 418 VEWTTPRESVKKY 430
Score = 37.3 bits (86), Expect = 0.001
Identities = 18/150 (12%), Positives = 35/150 (23%), Gaps = 13/150 (8%)
Query: 14 EALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 73
L P ++L I +W + + + +K +
Sbjct: 99 SGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLET-NFTLKSEWATHKFA-----DCKAK 152
Query: 74 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKP-NFKLVRS 132
D T+ + + G V P P N ++ S
Sbjct: 153 RDTPTSCTVDYSTVYFVNIEVWVEAENALGKVT--SDHINFDPVYKVKPNPPHNLSVINS 210
Query: 133 GTENGYGAFKVIWEP--NPERPGSHFFVKY 160
E K+ W + ++Y
Sbjct: 211 --EELSSILKLTWTNPSIKSVIILKYNIQY 238
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 68.7 bits (168), Expect = 8e-15
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 9/104 (8%)
Query: 4 SPPLWLTLNLEALVPGTVQSLEAIPLGSSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGT 61
P + L+ P ++ +G + L+W + + NG + Y I Y+++ G
Sbjct: 183 GSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIG- 241
Query: 62 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
D + T L+ L T Y + +A YT G
Sbjct: 242 ------NETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGK 279
Score = 53.3 bits (128), Expect = 3e-09
Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 11/147 (7%)
Query: 4 SPPLWLTLNLEALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKV 63
S LT+ + +++W P + Y +++ V K
Sbjct: 87 SDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEW---TTPRESVKKYILEWC-VLSDKA 142
Query: 64 GPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPG 123
+ + + L S Y I + G G+ I+ +
Sbjct: 143 PCITDWQQ-EDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLK--QAPPSK 199
Query: 124 KPNFKLVRSGTENGYGAFKVIWEPNPE 150
P + + G + W+ P
Sbjct: 200 GPTVRTKKVGK----NEAVLEWDQLPV 222
Score = 41.3 bits (97), Expect = 4e-05
Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 20/127 (15%)
Query: 36 LKW--VKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYR 93
L W + P + NG ++ Y++ K + + T + KL + +Y
Sbjct: 27 LVWKTLPPFEANGKILDYEVTLTRWKSH-----------LQNYTVNATKLTVNLTNDRYL 75
Query: 94 IHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTENGYGAFKVIWEPNPERPG 153
L G D A V W P
Sbjct: 76 ATLTVRNLVGKSD--AAVLTIPACDFQATHPVMDLKAFPKDN----MLWVEWTT-PRESV 128
Query: 154 SHFFVKY 160
+ +++
Sbjct: 129 KKYILEW 135
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 69.4 bits (169), Expect = 1e-14
Identities = 28/153 (18%), Positives = 47/153 (30%), Gaps = 7/153 (4%)
Query: 4 SPPLWLTLNLEALVPGTV-QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK 62
L + + +PG V +L+W +P Q GV+ Y+I Y++V
Sbjct: 448 KESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFD 507
Query: 63 --VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNV 120
+ + T GL P T Y + T G G + T+ +
Sbjct: 508 PEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPS 567
Query: 121 APGKPNFKLVRSGTENGYGAFKVIWEPNPERPG 153
P + V+ +P R
Sbjct: 568 MPAYELETPLNQTDN----TVTVMLKPAHSRGA 596
Score = 56.3 bits (135), Expect = 4e-10
Identities = 19/145 (13%), Positives = 42/145 (28%), Gaps = 9/145 (6%)
Query: 14 EALVPGTVQSLEAIPLGSSAFYLKWVKPEQP--NGVLMGYKIKYQSVKGTKVGPLLERLP 71
A + LE + + S ++W + Y G + + E +
Sbjct: 356 CADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQ-EQVREEVS 414
Query: 72 YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVR 131
+ ++ + + L P T + L G + +T +++ P +
Sbjct: 415 WDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTD--EDLPGAVPTESIQG 472
Query: 132 SGTENGYGAFKVIWEPNPERPGSHF 156
S E + W P +
Sbjct: 473 STFEE---KIFLQWRE-PTQTYGVI 493
Score = 47.5 bits (112), Expect = 4e-07
Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 11/145 (7%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQ-PNGVLMGYKIKYQSVKGTKVGPLLERLPYISD 75
P + + +G++ +++ +G ++ +++Y + G+
Sbjct: 261 PPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWN--------DRQP 312
Query: 76 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTE 135
+TS K+ L+P T+Y I + G T P + KL +
Sbjct: 313 VDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVK 372
Query: 136 NGYGAFKVIWEPNPERPGSHFFVKY 160
+ + WEP
Sbjct: 373 S--RQITIRWEPFGYNVTRCHSYNL 395
Score = 40.1 bits (93), Expect = 1e-04
Identities = 19/147 (12%), Positives = 30/147 (20%), Gaps = 40/147 (27%)
Query: 17 VPGTVQSLEAIPLGSSA--FYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYIS 74
P PL + + + Y+I + + + E L
Sbjct: 565 APSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYP 624
Query: 75 DPTTTSAKL------------------------------------AGLEPSTKYRIHLAG 98
P L P YRI+
Sbjct: 625 VPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQA 684
Query: 99 YTKAGDGADYFIEHRTRGTDNVAPGKP 125
++A I+ T A KP
Sbjct: 685 ASRANGETK--IDCVQVATKGAATPKP 709
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 64.4 bits (157), Expect = 3e-14
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 22 QSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSV--KGTKVGPLLERLPYISDPT 77
++ + S+ + W V + G L GY+I Y + +E+ +
Sbjct: 19 GNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGS 78
Query: 78 TTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
T L GLEP + Y +++ G+G
Sbjct: 79 KTHGMLPGLEPFSHYTLNVRVVNGKGEG 106
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 63.6 bits (155), Expect = 5e-14
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
+P + + + + S L W P + G + + + + + ER + P
Sbjct: 17 LPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNR-----ERALNTTQP 71
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ + L+P Y + Y + G G
Sbjct: 72 GSLQLTVGNLKPEAMYTFRVVAYNEWGPG 100
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 66.5 bits (161), Expect = 1e-13
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 14 EALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 73
EA V + ++ +L W +P++PNG+++ Y++ Y+ ++ R +
Sbjct: 789 EAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHF- 847
Query: 74 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+L GL P Y + + + AG+G
Sbjct: 848 --ALERGCRLRGLSP-GNYSVRIRATSLAGNG 876
Score = 49.9 bits (118), Expect = 7e-08
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 17/131 (12%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
P ++ SS LKW P PNG + Y + ++ + D
Sbjct: 594 NPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSE-------LFELDY 646
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTEN 136
KL PS + E+ + + K + ++++ E+
Sbjct: 647 CLKGLKL----PSRTWSPPFESEDSQKHNQS---EYEDSAGECCSCPKTDSQILKELEES 699
Query: 137 GYGAFKVIWEP 147
+F+ +E
Sbjct: 700 ---SFRKTFED 707
Score = 48.4 bits (114), Expect = 2e-07
Identities = 27/153 (17%), Positives = 49/153 (32%), Gaps = 35/153 (22%)
Query: 36 LKWVKPEQPNG-VLMGYKIKYQSVKGTKVGPLLERLPYISD------------------P 76
L+W P+ L+G+ + Y+ V + S+
Sbjct: 487 LRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQ 546
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYF------IEHRTRGTDNVAPGKPNFKLV 130
+ GL+P T+Y I + D + I +T T P P +
Sbjct: 547 NHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDAT---NPSVPLDPIS 603
Query: 131 RSGTENGYGAFKVIWEPNPERPG---SHFFVKY 160
S + + + W+P P P +H+ V +
Sbjct: 604 VSNSSS---QIILKWKP-PSDPNGNITHYLVFW 632
Score = 44.5 bits (104), Expect = 5e-06
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 12/97 (12%)
Query: 71 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGAD----YFIEHRTRGTDNVAPGKPN 126
P+ S ++GL T YRI L + ++ RT + A
Sbjct: 739 PFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTM-PEAKADDIVG 797
Query: 127 FKLVRSGTENGYGAFKVIWEPNPERPGS---HFFVKY 160
N ++W+ P+ P + V Y
Sbjct: 798 PVTHEIFENN---VVHLMWQE-PKEPNGLIVLYEVSY 830
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 62.4 bits (152), Expect = 1e-13
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKP-EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISD 75
+P + + A + + L W P P+G + Y + Y + ER+ S
Sbjct: 17 LPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIAR-----ERVENTSH 71
Query: 76 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
P + L P+T Y + K G G
Sbjct: 72 PGEMQVTIQNLMPATVYIFRVMAQNKHGSG 101
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 62.4 bits (152), Expect = 1e-13
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 4/89 (4%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
P + + A + W P + NG + Y + Y K + +
Sbjct: 11 APKDLT-VITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIME---TISG 66
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ ++ L T Y + G G
Sbjct: 67 DRLTHQIMDLNLDTMYYFRIQARNSKGVG 95
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 62.0 bits (151), Expect = 2e-13
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 22 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 81
+ L SS + W ++ Y+I+Y + + ++ SA
Sbjct: 23 TEVGVKVLSSSEISVHWEHV--LEKIVESYQIRYWAAHDKEEAANRVQVT----SQEYSA 76
Query: 82 KLAGLEPSTKYRIHLAGYTKAGDG 105
+L L P T+Y I + AG G
Sbjct: 77 RLENLLPDTQYFIEVGACNSAGCG 100
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 61.0 bits (148), Expect = 5e-13
Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 5/95 (5%)
Query: 13 LEALVPGTVQSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKGTKVGPLLERL 70
+ + + LKW + N + G+ I Y+ +
Sbjct: 4 GSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDS---DYK 60
Query: 71 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ + ++ L+P T Y I + + + G+
Sbjct: 61 KDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGES 95
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 60.5 bits (147), Expect = 7e-13
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
VP T L LG ++ + W +P L GY ++YQ + G ++ L I +P
Sbjct: 17 VPDTPTRLVFSALGPTSLRVSWQEPR-CERPLQGYSVEYQLLNGGELHRLN-----IPNP 70
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGA 106
TS + L P+ Y + ++ G G
Sbjct: 71 AQTSVVVEDLLPNHSYVFRVRAQSQEGWGR 100
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 64.0 bits (155), Expect = 8e-13
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 7/93 (7%)
Query: 14 EALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 73
++ + +++ + W P + Y++ Y+ +
Sbjct: 437 VSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGD-------SNSYNV 489
Query: 74 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGA 106
S L L P T Y + + T+ G GA
Sbjct: 490 RRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGA 522
Score = 54.8 bits (131), Expect = 1e-09
Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 13/147 (8%)
Query: 14 EALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNG-VLMGYKIKYQ-----SVKGTKVGPLL 67
P L A+ +G+ L+W P+ G + Y + + S + +
Sbjct: 330 CTRPPSAPHYLTAVGMGAKVE-LRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASV 388
Query: 68 ERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNF 127
T TS ++ LEP Y + + ++ +P
Sbjct: 389 RYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLV--TSRSFRTASVSINQTEPPK 446
Query: 128 KLVRSGTENGYGAFKVIWEPNPERPGS 154
+ + + V W P S
Sbjct: 447 VRLEGRSTT---SLSVSWSI-PPPQQS 469
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 60.3 bits (146), Expect = 1e-12
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 21 VQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTS 80
V+ + L + + W ++ + GY++ Y+ G + + L PT S
Sbjct: 19 VRLHNPVVLTPTTVQVTW-TVDRQPQFIQGYRVMYRQTSGLQATSSWQNLD-AKVPTERS 76
Query: 81 AKLAGLEPSTKYRIHLAGYTKAGDGAD 107
A L L+ Y I + Y G D
Sbjct: 77 AVLVNLKKGVTYEIKVRPYFNEFQGMD 103
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 59.4 bits (144), Expect = 2e-12
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 14 EALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 73
+ V LE + ++ + W + Y+I Y G P+ E +
Sbjct: 4 GSSVSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGD--SPVQE---FT 58
Query: 74 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
++A ++GL+P Y I + Y G
Sbjct: 59 VPGYYSTATISGLKPGVDYTITVYAYDTFFPG 90
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 58.7 bits (142), Expect = 5e-12
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 18/100 (18%)
Query: 20 TVQSLEAIPLG------------SSAFYLKWVKP--EQPNGVLMGYKIKYQSVKGTKVGP 65
+ E P S ++W+KP +Q +G L+GY+I +
Sbjct: 10 LASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKE 69
Query: 66 LLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
LLE + + A+++ + + +A T+ G G
Sbjct: 70 LLEEVG----QNGSRARISVQVHNATCTVRIAAVTRGGVG 105
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 57.5 bits (139), Expect = 8e-12
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 11/103 (10%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
V LE + ++ + W P + V Y+I Y G P+ E +
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDAPMSSSSVY-YYRITYGETGGN--SPVQE---FTVPY 57
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYF-----IEHRT 114
++++A ++GL P Y I + + + G + I +RT
Sbjct: 58 SSSTATISGLSPGVDYTITVYAWGEDSAGYMFMYSPISINYRT 100
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 60.2 bits (146), Expect = 1e-11
Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 18/145 (12%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
++L +++ L+W + YK+ Y ++ G E L
Sbjct: 104 EIDAPKNLRVGSRTATSLDLEW---DNSEAEAQEYKVVYSTLAG---EQYHEVLVPKGIG 157
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKP-NFKLVRSGTE 135
TT L L P T+Y + ++ + + RT P + + S
Sbjct: 158 PTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNART------ELDSPRDLMVTASSET 211
Query: 136 NGYGAFKVIWEPNPERPGSHFFVKY 160
+ +IW P H+ + +
Sbjct: 212 ----SISLIWTK-ASGPIDHYRITF 231
Score = 56.7 bits (137), Expect = 2e-10
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 10/98 (10%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
+ + L ++ L W + +G + Y+I + G
Sbjct: 196 ELDSPRDLMVTASSETSISLIW---TKASGPIDHYRITFTPSSGISS-------EVTVPR 245
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRT 114
TS L LEP +Y I + + ++ T
Sbjct: 246 DRTSYTLTDLEPGAEYIISITAERGRQQSLESTVDAFT 283
Score = 54.8 bits (132), Expect = 8e-10
Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 20/145 (13%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
V + + + +++W P + +KY V G + + P
Sbjct: 14 VIDGPTQILVRDVSDTVAFVEW---TPPRAKVDFILLKYGLVGGEG-----GKTTFRLQP 65
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKP-NFKLVRSGTE 135
+ + L P ++Y + ++ + + T P N + V S T
Sbjct: 66 PLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTT------EIDAPKNLR-VGSRTA 118
Query: 136 NGYGAFKVIWEPNPERPGSHFFVKY 160
+ + W+ E + V Y
Sbjct: 119 T---SLDLEWDN-SEAEAQEYKVVY 139
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 60.2 bits (146), Expect = 1e-11
Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 18/144 (12%)
Query: 18 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 77
+ L + + S+ L+W + ++GY+I + D +
Sbjct: 96 VPQLTDLSFVDITDSSIGLRWTPL--NSSTIIGYRITVVAAGEGI-----PIFEDFVDSS 148
Query: 78 TTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKP-NFKLVRSGTEN 136
+ GLEP Y I + G+ A T T A P + + G +
Sbjct: 149 VGYYTVTGLEPGIDYDISVITLINGGESA------PTTLTQQTAVPPPTDLRFTNIGPD- 201
Query: 137 GYGAFKVIWEPNPERPGSHFFVKY 160
+V W P P ++F V+Y
Sbjct: 202 ---TMRVTWAPPPSIDLTNFLVRY 222
Score = 59.4 bits (144), Expect = 3e-11
Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 17/144 (11%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
L +G + W P P+ L + ++Y VK + + P
Sbjct: 186 AVPPPTDLRFTNIGPDTMRVTWAPP--PSIDLTNFLVRYSPVKNEE-----DVAELSISP 238
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTEN 136
+ + L L P T+Y + ++ + + +T P T N
Sbjct: 239 SDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKT------GLDSPTGIDFSDITAN 292
Query: 137 GYGAFKVIWEPNPERPGSHFFVKY 160
+F V W P + + +++
Sbjct: 293 ---SFTVHWIA-PRATITGYRIRH 312
Score = 56.0 bits (135), Expect = 4e-10
Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 11/102 (10%)
Query: 4 SPPLWLTLNLEALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKV 63
S PL + + ++ + +++F + W P + GY+I++ +
Sbjct: 267 STPLRGR---QKTGLDSPTGIDFSDITANSFTVHW---IAPRATITGYRIRHHPEHFSG- 319
Query: 64 GPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ S L L P T+Y + + +
Sbjct: 320 ----RPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREES 357
Score = 46.3 bits (110), Expect = 8e-07
Identities = 17/146 (11%), Positives = 37/146 (25%), Gaps = 17/146 (11%)
Query: 17 VP-GTVQSLEAIPLGS-SAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYIS 74
+P +L + W + P+ + GY+I G + L E +
Sbjct: 1 MPLSPPTNLHLEANPDTGVLTVSWERSTTPD--ITGYRITTTPTNGQQGNSLEEVVH--- 55
Query: 75 DPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGT 134
+S L P +Y + + + P +
Sbjct: 56 -ADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIP-----EVPQLTDLSF----V 105
Query: 135 ENGYGAFKVIWEPNPERPGSHFFVKY 160
+ + + W P + +
Sbjct: 106 DITDSSIGLRWTPLNSSTIIGYRITV 131
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 60.4 bits (145), Expect = 2e-11
Identities = 22/142 (15%), Positives = 45/142 (31%), Gaps = 15/142 (10%)
Query: 18 PGTVQSLEAIPLGSSAFYLKWVKPEQP-NGVLMGYKIKYQSVKGT----KVGPLLERLPY 72
P + + + + + W + + G+++ + V + +
Sbjct: 528 PENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQ 587
Query: 73 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRS 132
I + L PST YR+ + T G+G RT + + + K
Sbjct: 588 ILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKTFRTPELPPSSAHRSHLKHRHP 647
Query: 133 GTENGYGAFKVIWEPNPERPGS 154
++P+PER G
Sbjct: 648 HH----------YKPSPERYGK 659
Score = 55.7 bits (133), Expect = 7e-10
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 20 TVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKY-QSVKGTKVGPLLERLPYISDPTT 78
+ + GS + W PE+P+ + YK+ + V + P ++ +D
Sbjct: 274 RLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQ 333
Query: 79 TSAKLAGLEPSTKYRIHLAGYTKAGDG 105
S L L+P Y + L T G
Sbjct: 334 NSVILEKLQPDCDYVVELQAITYWGQT 360
Score = 50.0 bits (118), Expect = 5e-08
Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 6/153 (3%)
Query: 14 EALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY- 72
+ + + L L S +KW + + Y ++ + G
Sbjct: 157 KGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIHPSEDDATHWQT 216
Query: 73 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG-ADYFIEHRTRGTDNVAPGKPNFKLVR 131
++ T +L + PS Y+ +A G +H D AP P +
Sbjct: 217 VAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLA 276
Query: 132 SGTENGYGAFKVI--WEPNPER--PGSHFFVKY 160
+ T N G+ V W+ E P H+ V +
Sbjct: 277 NSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFW 309
Score = 42.6 bits (99), Expect = 2e-05
Identities = 17/123 (13%), Positives = 32/123 (26%), Gaps = 5/123 (4%)
Query: 25 EAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLA 84
G + W K + + Y +++ L
Sbjct: 411 PFYQDGQLQVKVYWKKT--EDPTVNRYHVRWFPEACAHNRTTGSE-ASSGMTHENYIILQ 467
Query: 85 GLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTENGYGAFKVI 144
L S KY++ + + T A + K + E G+ KV+
Sbjct: 468 DLSFSCKYKVTVQPIRPKSHSKAEAVFFTT--PPCSALKGKSHKPIGCLGEAGHVLSKVL 525
Query: 145 WEP 147
+P
Sbjct: 526 AKP 528
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 59.8 bits (145), Expect = 2e-11
Identities = 19/147 (12%), Positives = 46/147 (31%), Gaps = 18/147 (12%)
Query: 14 EALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 73
+ + ++ + +++F + W P + GY+I++ +
Sbjct: 182 QKTGLDSPTGIDFSDITANSFTVHW---IAPRATITGYRIRHHPEHFSG-----RPREDR 233
Query: 74 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSG 133
+ S L L P T+Y + + + G + P V +
Sbjct: 234 VPHSRNSITLTNLTPGTEYVVSIVALNGREESP------LLIGQQSTVSDVPRDLEVVAA 287
Query: 134 TENGYGAFKVIWEPNPERPGSHFFVKY 160
T + + W+ P ++ + Y
Sbjct: 288 TPT---SLLISWDA-PAVTVRYYRITY 310
Score = 59.1 bits (143), Expect = 3e-11
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 4 SPPLWLTLNLEALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKV 63
SP L ++ V + LE + ++ + W + P + Y+I Y G
Sbjct: 265 SPLLIGQ---QSTVSDVPRDLEVVAATPTSLLISW---DAPAVTVRYYRITYGETGGNS- 317
Query: 64 GPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ + ++A ++GL+P Y I + T GD
Sbjct: 318 ----PVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDS 355
Score = 54.8 bits (132), Expect = 9e-10
Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 17/144 (11%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
L +G + W P P+ L + ++Y VK + + P
Sbjct: 94 AVPPPTDLRFTNIGPDTMRVTWAPP--PSIDLTNFLVRYSPVKNEE-----DVAELSISP 146
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTEN 136
+ + L L P T+Y + ++ + + RG P T N
Sbjct: 147 SDNAVVLTNLLPGTEYVVSVSSVYEQHEST------PLRGRQKTGLDSPTGIDFSDITAN 200
Query: 137 GYGAFKVIWEPNPERPGSHFFVKY 160
+F V W P + + +++
Sbjct: 201 ---SFTVHWIA-PRATITGYRIRH 220
Score = 52.1 bits (125), Expect = 9e-09
Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 16/144 (11%)
Query: 18 PGTVQSLEAIPLG-SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
+L + + W + P+ + GY+I G + L E +
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTTPD--ITGYRITTTPTNGQQGNSLEEVVH----A 55
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTEN 136
+S L P +Y + + + P + + G +
Sbjct: 56 DQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIP-----AVPPPTDLRFTNIGPDT 110
Query: 137 GYGAFKVIWEPNPERPGSHFFVKY 160
+V W P P ++F V+Y
Sbjct: 111 ----MRVTWAPPPSIDLTNFLVRY 130
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 56.3 bits (136), Expect = 3e-11
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 10/91 (10%)
Query: 17 VPGTVQSLEAIPL--GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYIS 74
P ++L+ W P +G++ Y ++Y
Sbjct: 7 GPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQ-------- 58
Query: 75 DPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ ++ L +T Y + +A T G G
Sbjct: 59 RAASNFTEIKNLLVNTLYTVRVAAVTSRGIG 89
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 57.1 bits (138), Expect = 6e-11
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
L +G + W P P+ L + ++Y VK + L P
Sbjct: 113 AVPPPTDLRFTNIGPDTMRVTWAPP--PSIDLTNFLVRYSPVKNEEDVAELSI-----SP 165
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ + L L P T+Y + ++ + +
Sbjct: 166 SDNAVVLTNLLPGTEYVVSVSSVYEQHES 194
Score = 55.6 bits (134), Expect = 3e-10
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 16/139 (11%)
Query: 22 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 81
L + + S+ L+W + ++GY+I + D +
Sbjct: 27 TDLSFVDITDSSIGLRWTPL--NSSTIIGYRITVVAAGEGI-----PIFEDFVDSSVGYY 79
Query: 82 KLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTENGYGAF 141
+ GLEP Y I + G+ + +T A P + +
Sbjct: 80 TVTGLEPGIDYDISVYTVKNGGESTPTTLTQQT------AVPPPTDLRFTNIGPD---TM 130
Query: 142 KVIWEPNPERPGSHFFVKY 160
+V W P P ++F V+Y
Sbjct: 131 RVTWAPPPSIDLTNFLVRY 149
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 56.7 bits (137), Expect = 8e-11
Identities = 31/144 (21%), Positives = 43/144 (29%), Gaps = 20/144 (13%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
+ LE + L+W +P Y++ Y S G K
Sbjct: 6 DLDNPKDLEVSDPTETTLSLRW---RRPVAKFDRYRLTYVSPSGKKN-------EMEIPV 55
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTEN 136
+TS L GL+ T+Y I L T + G P TEN
Sbjct: 56 DSTSFILRGLDAGTEYTISLVAEKGRHKSK------PTTIKGSTVVGSPKGISFSDITEN 109
Query: 137 GYGAFKVIWEPNPERPGSHFFVKY 160
+ V W P P + V Y
Sbjct: 110 ---SATVSWTP-PRSRVDSYRVSY 129
Score = 54.0 bits (130), Expect = 7e-10
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
V G+ + + + ++ + W P + Y++ Y + G + D
Sbjct: 94 VVGSPKGISFSDITENSATVSW---TPPRSRVDSYRVSYVPITGGTPNVV------TVDG 144
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRT 114
+ T KL L P Y +++ + +T
Sbjct: 145 SKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGILKT 182
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 57.5 bits (139), Expect = 1e-10
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
+L + ++ + W + P + GY IKY+ + P
Sbjct: 201 AIDAPSNLRFLATTPNSLLVSW---QPPRARITGYIIKYEKPGSPP-----REVVPRPRP 252
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
T A + GLEP T+Y I++
Sbjct: 253 GVTEATITGLEPGTEYTIYVIALKNNQKS 281
Score = 56.7 bits (137), Expect = 2e-10
Identities = 24/152 (15%), Positives = 46/152 (30%), Gaps = 16/152 (10%)
Query: 9 LTLNLEALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLE 68
L + + L+ + ++ +W PN L GY+++ + T
Sbjct: 12 LEVLFQGPAIPAPTDLKFTQVTPTSLSAQW---TPPNVQLTGYRVRVTPKEKTG-----P 63
Query: 69 RLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFK 128
P ++S ++GL +TKY + + T + P +
Sbjct: 64 MKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTS-RPAQGVVTTLENVSPPRRAR-- 120
Query: 129 LVRSGTENGYGAFKVIWEPNPERPGSHFFVKY 160
V TE + W + F V
Sbjct: 121 -VTDATET---TITISWRT-KTETITGFQVDA 147
Score = 55.6 bits (134), Expect = 5e-10
Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 21/144 (14%)
Query: 18 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 77
+ + + W + G+++ G + P
Sbjct: 113 VSPPRRARVTDATETTITISW---RTKTETITGFQVDAVPANGQ------TPIQRTIKPD 163
Query: 78 TTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKP-NFKLVRSGTEN 136
S + GL+P T Y+I+L + I+ T A P N + + T N
Sbjct: 164 VRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDAST------AIDAPSNLR-FLATTPN 216
Query: 137 GYGAFKVIWEPNPERPGSHFFVKY 160
+ V W+P P + + +KY
Sbjct: 217 ---SLLVSWQP-PRARITGYIIKY 236
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 54.3 bits (131), Expect = 1e-10
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
PG ++ + L+W P++ G L+GY+++Y + +
Sbjct: 7 GPGRP-TMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTI------DFGK 59
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ GL T Y LA +AG G
Sbjct: 60 DDQHFTVTGLHKGTTYIFRLAAKNRAGLG 88
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 53.5 bits (129), Expect = 2e-10
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
V LE + ++ + W + + + Y+I Y G
Sbjct: 4 VSSVPTKLEVVAATPTSLLISW---DASSSSVSYYRITYGETGGNSPVQEFTV-----PG 55
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
++++A ++GL P Y I + Y D
Sbjct: 56 SSSTATISGLSPGVDYTITVYAYYSYYDL 84
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 51.0 bits (122), Expect = 3e-09
Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 11/91 (12%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYIS 74
P + L W VK + + GYK+ Y++ V
Sbjct: 17 PPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNV---------QV 67
Query: 75 DPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
T ++ L Y I + T GDG
Sbjct: 68 LNTNKTSAELVLPIKEDYIIEVKATTDGGDG 98
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 50.4 bits (121), Expect = 3e-09
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 14 EALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 73
+ P + + ++ + W P + Y++++ V+G+
Sbjct: 4 GSSGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQI--------C 55
Query: 74 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGA 106
S ++ GL P+T Y + + G G
Sbjct: 56 YCGPGLSYEIKGLSPATTYYCRVQALSVVGAGP 88
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 50.1 bits (120), Expect = 5e-09
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 8/88 (9%)
Query: 18 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 77
+L + + W P G ++ Y + Y G
Sbjct: 8 RSPPSNLALASETPDSLQVSW---TPPLGRVLHYWLTYAPASGLG-----PEKSVSVPGA 59
Query: 78 TTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ L L+ +TKYR+ ++ AG
Sbjct: 60 RSHVTLPDLQAATKYRVLVSAIYAAGRS 87
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 52.0 bits (124), Expect = 5e-09
Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 24/152 (15%)
Query: 22 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 81
+ P ++ ++W P+ + Y ++++ S
Sbjct: 6 VFITETPSQPNSHPIQWNAPQ--PSHISKYILRWRPKNSVG-----RWKEATIPGHLNSY 58
Query: 82 KLAGLEPSTKYRIHLAGYTKAGDGADYFI-------------EHRTRGTDNVAPGKPNFK 128
+ GL+P Y L + G T T +P +
Sbjct: 59 TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSE 118
Query: 129 LVRSGTENGYGAFKVIWEPNPERPGSHFFVKY 160
V T + +F V W S F V+Y
Sbjct: 119 SVTEITAS---SFVVSWVS-ASDTVSGFRVEY 146
Score = 45.4 bits (107), Expect = 1e-06
Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 4 SPPLWLTLNLEALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKV 63
+T P S + +S+F + W + + G++++Y+ +
Sbjct: 98 VTSNTVTGETTPFSPLVATSESVTEITASSFVVSW---VSASDTVSGFRVEYELSEEGD- 153
Query: 64 GPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
E T TS + L P KY +++ ++ G+
Sbjct: 154 ----EPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQ 191
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 49.8 bits (119), Expect = 6e-09
Identities = 22/101 (21%), Positives = 30/101 (29%), Gaps = 10/101 (9%)
Query: 22 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 81
+ LEA + L W +P GY + + + G + TS
Sbjct: 12 RDLEAKEVTPRTALLTW---TEPPVRPAGYLLSFHTPGGQ-------TQEILLPGGITSH 61
Query: 82 KLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAP 122
+L GL PST Y L T G P
Sbjct: 62 QLLGLFPSTSYNARLQAMWGQSLLPPVSTSFTTGGLRISGP 102
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 52.5 bits (126), Expect = 7e-09
Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 12/110 (10%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
+ S+ P +F L K + ++ Y +KY + L
Sbjct: 292 REPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKY-----RSKDKEDQWLEKKVQG 346
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPN 126
L L+ + Y + + + G E P KPN
Sbjct: 347 NKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSM-------PPKPN 389
Score = 52.5 bits (126), Expect = 8e-09
Identities = 33/147 (22%), Positives = 53/147 (36%), Gaps = 14/147 (9%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLPYISD 75
VP + ++ I L + + + KP+ GV + Y++ + V S
Sbjct: 195 VPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASE------IWKIVRSH 248
Query: 76 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTE 135
T L LEP+T Y I +A G G DY + P P+ G
Sbjct: 249 GVQTMVVLNNLEPNTTYEIRVAAVNGKGQG-DYSKIEIFQTLPVREPSPPSI----HGQP 303
Query: 136 NGYGAFKVIWEPNPER--PGSHFFVKY 160
+ +FK+ + P + VKY
Sbjct: 304 SSGKSFKLSITKQDDGGAPILEYIVKY 330
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 48.9 bits (117), Expect = 1e-08
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 22 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 81
+ L + + + W E P G + Y++ Y S + L D +A
Sbjct: 6 KGLAFTDVDVDSIKIAW---ESPQGQVSRYRVTYSSPEDGI-----HELFPAPDGEEDTA 57
Query: 82 KLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRT 114
+L GL P ++Y + + + T
Sbjct: 58 ELQGLRPGSEYTVSVVALHDDMESQPLIGTQST 90
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 50.8 bits (122), Expect = 1e-08
Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 13/138 (9%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLPYISD 75
PG Q L+ + ++ L W P G + Y ++ + + ++
Sbjct: 5 TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTV------ATN 58
Query: 76 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTE 135
TS K+ L+ Y + + G G E + P P K+ + +
Sbjct: 59 CHKTSWKVDQLQEGCSYYFRVLAENEYGIGL--PAETAESVKASERPLPPG-KI--TLMD 113
Query: 136 NGYGAFKVIWEPNPERPG 153
+ + WE PE G
Sbjct: 114 VTRNSVSLSWEK-PEHDG 130
Score = 50.0 bits (120), Expect = 2e-08
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNG-VLMGYKIKYQSVKGTKVGPLLERLPYISD 75
P + + + ++ L W KPE G ++GY ++ Q+ K +
Sbjct: 102 RPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWAT-------CAT 154
Query: 76 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGA 106
T A + GL +Y ++ + G
Sbjct: 155 VKVTEATITGLIQGEEYSFRVSAQNEKGISD 185
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 50.6 bits (121), Expect = 2e-08
Identities = 8/90 (8%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
P + + ++ + +K + + Y ++Y+++ +
Sbjct: 109 EPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSE------WKPEIRLPS 162
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGA 106
+ L L+ + +Y +++ + G
Sbjct: 163 GSDHVMLKSLDWNAEYEVYVVAENQQGKSK 192
Score = 48.7 bits (116), Expect = 8e-08
Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 12/148 (8%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLPYISD 75
P + + P S+A +++ +PE GV ++ YK ++++V
Sbjct: 8 TPSSPSIDQVEPYSSTA-QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK--EA 64
Query: 76 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTE 135
+ GL+P T Y + LA G G P P +
Sbjct: 65 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVRE-PSAPKLEGQMGEDG 123
Query: 136 NGYGAFKVIWEPNPERPGS---HFFVKY 160
N + KV + GS H+ V+Y
Sbjct: 124 N---SIKVNLIK-QDDGGSPIRHYLVRY 147
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 48.7 bits (116), Expect = 3e-08
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 10 TLNLEALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLER 69
L + V LE + ++ + W + P + Y+I Y G P+ E
Sbjct: 21 NLYFQGSVSDVPTKLEVVAATPTSLLISW---DAPAVTVRYYRITYGETGGN--SPVQE- 74
Query: 70 LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ + ++A ++GL+P Y I + T
Sbjct: 75 --FTVPGSKSTATISGLKPGVDYTITVYAVTGLRLM 108
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 48.2 bits (115), Expect = 3e-08
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 9/89 (10%)
Query: 18 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 77
+ L + A + W E + ++ Y S +G G +
Sbjct: 8 LAPPRHLGFSDVSHDAARVFW---EGAPRPVRLVRVTYVSSEGGHSGQTE------APGN 58
Query: 78 TTSAKLAGLEPSTKYRIHLAGYTKAGDGA 106
TSA L L ST Y + + G +
Sbjct: 59 ATSAMLGPLSSSTTYTVRVTCLYPGGGSS 87
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 48.0 bits (114), Expect = 4e-08
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 8/91 (8%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
V + LE + ++ + W + G Y+I Y G
Sbjct: 3 VSDVPRDLEVVAATPTSLLISW---DSGRGSYQYYRITYGETGGNSPVQEFT-----VPG 54
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGAD 107
+A ++GL+P Y I + T AD
Sbjct: 55 PVHTATISGLKPGVDYTITVYAVTDHKPHAD 85
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 47.9 bits (114), Expect = 5e-08
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 10/89 (11%)
Query: 22 QSLEAIPLGSSAFYLKWVKPEQP----NGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 77
++A L + W P Y +++++ ++ T
Sbjct: 13 VGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPA------NTKYKNANAT 66
Query: 78 TTSAKLAGLEPSTKYRIHLAGYTKAGDGA 106
T S + GL+P+T Y +
Sbjct: 67 TLSYLVTGLKPNTLYEFSVMVTKGRRSST 95
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 47.4 bits (113), Expect = 5e-08
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 22 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 81
+++ + + + W P P + G + + + + TS
Sbjct: 6 FNIKVTNITLTTAVVTWQPPILP---IEGILVTFGRKNDPS-----DETTVDLTSSITSL 57
Query: 82 KLAGLEPSTKYRIHLAGYTKAGDG 105
L LEP+T Y I +
Sbjct: 58 TLTNLEPNTTYEIRIVARNGQQYS 81
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 49.0 bits (117), Expect = 6e-08
Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 5/104 (4%)
Query: 4 SPPLWLTLNLEALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNG-VLMGYKIKYQSVKGTK 62
S +L + LE +A L W + ++ GY Y+
Sbjct: 102 SAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAG 161
Query: 63 VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGA 106
I S K+A LE +T Y L ++ A
Sbjct: 162 EYFKAT----IEGAHARSFKIAPLETATMYEFKLQSFSAASASE 201
Score = 47.1 bits (112), Expect = 3e-07
Identities = 23/150 (15%), Positives = 40/150 (26%), Gaps = 20/150 (13%)
Query: 24 LEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK-------VGPLLERLPYISDP 76
L + L+W+ P ++ +K++Y+ V K P +
Sbjct: 8 PNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELG 67
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG-----ADYFIEHRTRGTDN-VAPGKPNFKLV 130
+ +A + L+P YR + D + F D P
Sbjct: 68 KSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELL----- 122
Query: 131 RSGTENGYGAFKVIWEPNPERPGSHFFVKY 160
E A + W H Y
Sbjct: 123 -EIEEYSETAVVLHWSL-ASDADEHLITGY 150
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 47.4 bits (113), Expect = 6e-08
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 8/84 (9%)
Query: 22 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 81
+E + + + W P+ + G+++ Y +R
Sbjct: 7 SQIEVKDVTDTTALITW---MPPSQPVDGFELTYGIKDVPG-----DRTTIDLTEDENQY 58
Query: 82 KLAGLEPSTKYRIHLAGYTKAGDG 105
+ L+P T+Y + L
Sbjct: 59 SIGNLKPDTEYEVSLISRRGDMSS 82
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 47.6 bits (113), Expect = 6e-08
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 10/97 (10%)
Query: 14 EALVPGTVQSLEAIPLGSSAFYLKWVKPEQP----NGVLMGYKIKYQSVKGTKVGPLLER 69
+ ++A+ L A + W P + Y +++++
Sbjct: 15 LSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSA------SA 68
Query: 70 LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGA 106
D T+ S GL+P+T Y +
Sbjct: 69 KYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSST 105
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 47.3 bits (112), Expect = 6e-08
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 6/101 (5%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLP---YI 73
+ L + +S+ L W E P G + +++ + + P L +
Sbjct: 8 SRPRLSQLSVTDVTTSSLRLNW---EAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELM 64
Query: 74 SDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRT 114
T SA L L T Y + L G RT
Sbjct: 65 VPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTART 105
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 46.3 bits (110), Expect = 1e-07
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 22 QSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 81
L+ + ++ + W P+ + GY+I Y G E P++TS
Sbjct: 6 TDLQVTNVTDTSITVSW---TPPSATITGYRITYTPSNGPG-----EPKELTVPPSSTSV 57
Query: 82 KLAGLEPSTKYRIHLAGYTKAGDG 105
+ GL P +Y + + +
Sbjct: 58 TITGLTPGVEYVVSVYALKDNQES 81
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 46.3 bits (110), Expect = 1e-07
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 9/101 (8%)
Query: 16 LVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISD 75
++P ++L + + L W P+ + I+YQ + E +
Sbjct: 1 MLPA-PKNLVVSEVTEDSLRLSW---TAPDAAFDSFMIQYQESEKVG-----EAINLTVP 51
Query: 76 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRG 116
+ S L GL+P T+Y + + G E T G
Sbjct: 52 GSERSYDLTGLKPGTEYTVSIYGVKGGHRSNPLSAEFTTGG 92
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 47.8 bits (114), Expect = 2e-07
Identities = 10/95 (10%), Positives = 23/95 (24%), Gaps = 6/95 (6%)
Query: 13 LEALVPGTVQSLEAIPLGSSAFYLKWVKPEQP--NGVLMGYKIKYQSVKGTKVGPLLERL 70
+ ++ + + W + N Y + ++
Sbjct: 100 QPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNN-- 157
Query: 71 PYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
I D + +A KY I + G+
Sbjct: 158 --IFDWRQNNIVIADQPTFVKYLIKVVAINDRGES 190
Score = 39.3 bits (92), Expect = 1e-04
Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 12/148 (8%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
VP + I + + W + ++ Y I++ T P Y P
Sbjct: 5 VPNAPKLTG-ITCQADKAEIHWEQQGDNRSPILHYTIQFN----TSFTPASWDAAYEKVP 59
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTEN 136
T S+ + + P Y + + K G + T P K +V GTE
Sbjct: 60 NTDSSFVVQMSPWANYTFRVIAFNKIGAS-PPSAHSDSCTTQPDVPFKNPDNVVGQGTEP 118
Query: 137 GYGAFKVIWEPNPER----PGSHFFVKY 160
+ W P PE P H++V +
Sbjct: 119 --NNLVISWTPMPEIEHNAPNFHYYVSW 144
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 45.1 bits (107), Expect = 4e-07
Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 10/90 (11%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
P L A+ L L W + P + Y I+ + +
Sbjct: 7 GPDGPTQLRALNLTEGFAVLHW---KPPQNPVDTYDIQVTAPGAPPLQAET-------PG 56
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGA 106
+ L L T Y + G +
Sbjct: 57 SAVDYPLHDLVLHTNYTATVRGLRGPNLTS 86
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 44.8 bits (106), Expect = 5e-07
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 13/90 (14%)
Query: 18 PGTVQSLEAIPLGSSAFYLKW--VKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISD 75
+ SL+ + L W +P P G L Y++ + + + +
Sbjct: 10 SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNL-SYELHVLN-QDEE---------WHQM 58
Query: 76 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
L L+P T Y + + T G G
Sbjct: 59 VLEPRVLLTKLQPDTTYIVRVRTLTPLGPG 88
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 46.4 bits (109), Expect = 7e-07
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 18 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 77
P S+ SS L W P + +++ Y I+Y++ + + P + T
Sbjct: 202 PPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQI---PPEDTAST 258
Query: 78 TTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+S + L+P T+Y + + G G
Sbjct: 259 RSSFTVQDLKPFTEYVFRIRCMKEDGKG 286
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 46.8 bits (110), Expect = 8e-07
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 13 LEALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPY 72
E + P T S + + S+A L W P + +I+ + +
Sbjct: 377 TEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQ--EQRNVTIQ 434
Query: 73 ISDPTTTSAKLAGLEPSTKYRI 94
+ ++ L L P T Y
Sbjct: 435 GVENSSYLVALDKLNPYTLYTF 456
Score = 45.6 bits (107), Expect = 2e-06
Identities = 21/144 (14%), Positives = 36/144 (25%), Gaps = 7/144 (4%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
P T Q L W P + ++ Y V+ + +
Sbjct: 281 PPDTPQQLNCETHDLKEIICSW-NPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTN 339
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTEN 136
+ L Y L + G + + T+ V P P V+
Sbjct: 340 ESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVN---ITEKVYPHTPTSFKVKDINST 396
Query: 137 GYGAFKVIWEPNPERPGSHFFVKY 160
A K+ W +F +
Sbjct: 397 ---AVKLSWHLPGNFAKINFLCEI 417
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 43.7 bits (103), Expect = 1e-06
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
S + +S+F + WV + G++++Y+ + E
Sbjct: 5 SHLVATSESVTEITASSFVVSWVSASDT---VSGFRVEYELSEEGD-----EPQYLDLPS 56
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
T TS + L P KY +++ ++ G+
Sbjct: 57 TATSVNIPDLLPGRKYIVNVYQISEDGEQ 85
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 45.3 bits (106), Expect = 2e-06
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 18 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 77
V+ +A + + W +PE G+ GY + G KV +
Sbjct: 151 VNPVRDFKASEINKKNVTVTWTEPETTEGL-EGYILYKD---GKKVAEI--------GKD 198
Query: 78 TTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
TS L T Y +A G+
Sbjct: 199 ETSYTFKKLNRHTIYNFKIAAKYSNGEV 226
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 42.8 bits (100), Expect = 3e-06
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 10/101 (9%)
Query: 18 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 77
V + A+ + +++ L W + + YKI E + +
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAG----------ETDSSNLNVS 57
Query: 78 TTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTD 118
A + GL ST Y I + +G F++ T
Sbjct: 58 EPRAVIPGLRSSTFYNITVCPVLGDIEGTPGFLQVHTPPVP 98
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 42.4 bits (100), Expect = 4e-06
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLPYISD 75
P + + P S+A +++ +PE GV ++ YK ++++V
Sbjct: 6 TPSSPSIDQVEPYSSTAQ-VQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK--EA 62
Query: 76 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ GL+P T Y + LA G G
Sbjct: 63 SMEGIVTIVGLKPETTYAVRLAALNGKGLG 92
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 42.1 bits (99), Expect = 6e-06
Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 5/100 (5%)
Query: 23 SLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAK 82
S+ P +F L K + ++ Y +KY+S +
Sbjct: 13 SIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKK-----VQGNKDHII 67
Query: 83 LAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAP 122
L L+ + Y + + + G E N+
Sbjct: 68 LEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIK 107
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 41.7 bits (98), Expect = 7e-06
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Query: 17 VPGT-VQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISD 75
VP T + LE +++ L W +P GY ++ G + +
Sbjct: 9 VPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFRE-------VYV 61
Query: 76 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGA 106
T + GL ++ Y + + K G
Sbjct: 62 GKETMCTVDGLHFNSTYNARVKAFNKTGVSP 92
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 42.7 bits (100), Expect = 1e-05
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Query: 4 SPPLWLTLNLEALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKV 63
+ + P S+ SS L W P + +++ Y I+Y++ +
Sbjct: 92 DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTW 151
Query: 64 GPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ P + T +S + L+P T+Y + + G G
Sbjct: 152 SQI---PPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKG 190
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 42.2 bits (98), Expect = 2e-05
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
+ S EA P + L W + + +++++ +G L
Sbjct: 208 LRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEAS----WALVGPLPL 263
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+L GL P+T Y + + G
Sbjct: 264 EALQYELCGLLPATAYTLQIRCIRWPLPG 292
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 42.2 bits (98), Expect = 2e-05
Identities = 15/142 (10%), Positives = 30/142 (21%), Gaps = 17/142 (11%)
Query: 21 VQSLEAIPLGSSAFYLKWVKPEQPNG-VLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT 79
V +L W PE + + Y + ++ P T
Sbjct: 7 VTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFG-----------DKQDKKIAPETR 55
Query: 80 SAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKP-NFKLVRSGTENGY 138
+ L ++ T + +E + + +
Sbjct: 56 RSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSY-- 113
Query: 139 GAFKVIWEPNPERPGSHFFVKY 160
K W P + Y
Sbjct: 114 --MKCSWLPGRNTSPDTNYTLY 133
Score = 34.5 bits (78), Expect = 0.010
Identities = 8/71 (11%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 31 SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGT-------KVGPLLERLPYISDPTTTSAKL 83
+ Y++W P+ + Y+++ + + + + T+ +
Sbjct: 212 NDDLYVQWENPQNFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMV 271
Query: 84 AGLEPSTKYRI 94
G+ P T +
Sbjct: 272 PGVLPDTLNTV 282
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 40.5 bits (95), Expect = 2e-05
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLPYISD 75
P + + P S+A +++ +PE GV ++ YK ++++V S
Sbjct: 7 GPSSPSIDQVEPYSSTA-QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS- 64
Query: 76 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGA 106
+ GL+P T Y + LA G G
Sbjct: 65 -MEGIVTIVGLKPETTYAVRLAALNGKGLGE 94
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 39.9 bits (92), Expect = 1e-04
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 14 EALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYI 73
E + P SL+ + S+ W P + + +I+ K +
Sbjct: 383 ERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKK--EVRNATIRG 440
Query: 74 SDPTTTSAKLAGLEPSTKYRIH 95
++ +T + L P T Y
Sbjct: 441 AEDSTYHVAVDKLNPYTAYTFR 462
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 39.7 bits (92), Expect = 1e-04
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
Query: 4 SPPLWLTLNLEALVPGTVQSLEAIPLGSS-AFYLKWVKPEQPNGVLMGYKIKYQSVKGTK 62
SPP + + + P S++A + + W KP P L ++I+Y
Sbjct: 97 SPPTCVLPD-SVVKPLPPSSVKAEITINIGLLKISWEKPVFPENNLQ-FQIRYGLSGKEV 154
Query: 63 VGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ E + D + S L + Y + + G G
Sbjct: 155 QWKMYE----VYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLG 193
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 38.4 bits (89), Expect = 1e-04
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 7/96 (7%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK-------VGPLLER 69
L + L+W+ P ++ +K++Y+ V K P +
Sbjct: 2 STYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 70 LPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ +A + L+P YR + D
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDN 97
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 37.2 bits (86), Expect = 4e-04
Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 5/75 (6%)
Query: 31 SSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPST 90
L W PE L GY ++ + E L T T + GL
Sbjct: 20 PRGVLLHWDPPELVPKRLDGYVLEGRQGSQG-----WEVLDPAVAGTETELLVPGLIKDV 74
Query: 91 KYRIHLAGYTKAGDG 105
Y L + +
Sbjct: 75 LYEFRLVAFAGSFVS 89
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 37.1 bits (86), Expect = 4e-04
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 9/97 (9%)
Query: 18 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 77
++L + +L W QP+ Y ++ P E
Sbjct: 9 LPPPRALTLAAVTPRTVHLTW----QPSAGATHYLVRCSPA-----SPKGEEEEREVQVG 59
Query: 78 TTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRT 114
L GLEP Y + + I RT
Sbjct: 60 RPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRART 96
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 37.3 bits (86), Expect = 5e-04
Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 17/119 (14%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV---------LMGYKIKYQSVKGTKVGPLL 67
+ + A + + L W P L GY++ S
Sbjct: 17 LLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKD------ 70
Query: 68 ERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPN 126
+ + T+ L L+P+ Y + + G E T + P PN
Sbjct: 71 GKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGT--PSEAEIFTTLSCEPDIPN 127
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 37.7 bits (86), Expect = 8e-04
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 15/87 (17%)
Query: 18 PGTVQSLEAIPLG---------SSAFYLKWVKPEQPNGVL-MGYKIKYQSVKGTKVGPLL 67
++S I + ++ L+W + + ++I+Y+ T
Sbjct: 311 EKHIKSSVNIQMAPPSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATW----- 365
Query: 68 ERLPYISDPTTTSAKLAGLEPSTKYRI 94
+ + S L LEPST+Y
Sbjct: 366 KDSKTETLQNAHSMALPALEPSTRYWA 392
Score = 37.3 bits (85), Expect = 0.001
Identities = 19/130 (14%), Positives = 32/130 (24%), Gaps = 3/130 (2%)
Query: 31 SSAFYLKWVKPEQPNGV--LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEP 88
F L W L ++++ V + +S+ + + L P
Sbjct: 121 QDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMP 180
Query: 89 STKYRIHLAGYTKAGDGADYFIEH-RTRGTDNVAPGKPNFKLVRSGTENGYGAFKVIWEP 147
S+ Y + G + PG +G WE
Sbjct: 181 SSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEV 240
Query: 148 NPERPGSHFF 157
E S F
Sbjct: 241 RKEVASSVSF 250
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 36.3 bits (83), Expect = 0.002
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 25 EAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLA 84
+ + +L W + + +++YQ L+ LP + +L
Sbjct: 122 DVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPS----SKDQFELC 177
Query: 85 GLEPSTKYRIHLAGYTKAGDG 105
GL + Y + + + G
Sbjct: 178 GLHQAPVYTLQMRCIRSSLPG 198
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 35.3 bits (81), Expect = 0.002
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 36 LKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI 94
L W ++ +++ + I T + GLEP T Y+
Sbjct: 34 LYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGV---IYTGYATRHVVEGLEPRTLYKF 90
Query: 95 HLAGYTKAGDGA 106
L + +G+
Sbjct: 91 RLKVTSPSGEYE 102
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 35.6 bits (81), Expect = 0.003
Identities = 8/90 (8%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Query: 18 PGTVQSLEAIPLGSSAFYLKWVKPE--QPNGVLMGYKIKYQSVKGTKVGPLLERLPYISD 75
P ++ A+ + W P + + ++++Y++ + ++
Sbjct: 199 PPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSK------TFTTWMVK 252
Query: 76 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ ++ + L + G G
Sbjct: 253 DLQHHCVIHDAWSGLRHVVQLRAQEEFGQG 282
Score = 29.1 bits (64), Expect = 0.67
Identities = 17/144 (11%), Positives = 38/144 (26%), Gaps = 5/144 (3%)
Query: 18 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 77
P Q S +W P + + + + + E Y +
Sbjct: 95 PEEPQLSCFRKSPLSNVVCEW-GPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQ 153
Query: 78 TTSAKLAG-LEPSTKYRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTEN 136
S +LA S+ Y + + + G + + P + +
Sbjct: 154 KFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQG---CGILQPDPPANITVTAVAR 210
Query: 137 GYGAFKVIWEPNPERPGSHFFVKY 160
V W+ S + +++
Sbjct: 211 NPRWLSVTWQDPHSWNSSFYRLRF 234
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 34.7 bits (80), Expect = 0.004
Identities = 11/89 (12%), Positives = 24/89 (26%), Gaps = 6/89 (6%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
P ++ L+W P + + +++ KG
Sbjct: 17 EPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGN------GEFCQCYMG 70
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ K+ L P+ + L+ G
Sbjct: 71 SQKQFKITKLSPAMGCKFRLSARNDYGTS 99
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 33.4 bits (77), Expect = 0.005
Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 18/89 (20%)
Query: 18 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPT 77
P +L + +S+ L W GV GY + Y T
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVGVT-GYDV-YNG--TALAT----------TVT 49
Query: 78 TTSAKLAGLEPSTKYRIHLAGYTKAGDGA 106
T+A ++GL T Y KA D A
Sbjct: 50 GTTATISGLAADTSYTF----TVKAKDAA 74
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 34.7 bits (79), Expect = 0.006
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 10/86 (11%)
Query: 10 TLNLEALV-PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLE 68
L L+ LV P ++L L S L W + + + ++Y++
Sbjct: 90 MLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHCLE--HLVQYRTDWDHSW----- 142
Query: 69 RLPYISDPTTTSAKLAGLEPSTKYRI 94
S L ++ +Y
Sbjct: 143 --TEQSVDYRHKFSLPSVDGQKRYTF 166
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 33.5 bits (77), Expect = 0.008
Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 7/90 (7%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLPYISD 75
P S G + L+W KP + Y ++ + D
Sbjct: 7 GPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSG------YGFKPKYD 60
Query: 76 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ + L STKY+ + Y G
Sbjct: 61 GEDLAYTVKNLRRSTKYKFKVIAYNSEGKS 90
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 33.5 bits (77), Expect = 0.010
Identities = 13/77 (16%), Positives = 28/77 (36%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
+PG +L +G + L++ + + ++ Q + L ++P
Sbjct: 17 LPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEP 76
Query: 77 TTTSAKLAGLEPSTKYR 93
S ++ L P T Y
Sbjct: 77 DARSMEVPDLNPFTCYS 93
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 33.6 bits (77), Expect = 0.013
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 23 SLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSA 81
S++ + SS +++ +PE GV ++ YK ++++V
Sbjct: 118 SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK--EASMEGIV 175
Query: 82 KLAGLEPSTKYRIHLAGYTKAGDG 105
+ GL+P T Y + LA G G
Sbjct: 176 TIVGLKPETTYAVRLAALNGKGLG 199
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 33.6 bits (76), Expect = 0.017
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 10/86 (11%)
Query: 10 TLNLEALV-PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLE 68
L L+ LV P ++L L S L W + + + ++Y++
Sbjct: 128 MLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHCLE--HLVQYRTDWDHSW----- 180
Query: 69 RLPYISDPTTTSAKLAGLEPSTKYRI 94
S L ++ +Y
Sbjct: 181 --TEQSVDYRHKFSLPSVDGQKRYTF 204
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine
receptor; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 32.3 bits (73), Expect = 0.024
Identities = 8/77 (10%), Positives = 22/77 (28%), Gaps = 10/77 (12%)
Query: 23 SLEAIPLGSSAFYLKWVKPE---QPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTT 79
+P + W P P + + ++Y+ + + + T
Sbjct: 15 VARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVEL-------SNGT 67
Query: 80 SAKLAGLEPSTKYRIHL 96
+ + +Y I +
Sbjct: 68 AHTITDAYAGKEYIIQV 84
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 31.9 bits (73), Expect = 0.029
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 8/89 (8%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
P L +++ L W + + Y I+Y++ +
Sbjct: 7 GPKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGIQYRAAGTE------GPFQEVDGV 58
Query: 77 TTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
TT + GL P ++Y + G G
Sbjct: 59 ATTRYSIGGLSPFSEYAFRVLAVNSIGRG 87
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 31.6 bits (72), Expect = 0.043
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 36 LKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIH 95
L W KP N L+ Y ++ L DP TS + GL P+ Y+
Sbjct: 38 LTWTKPFDGNSPLIRYILEMSENNAPW-----TVLLASVDPKATSVTVKGLVPARSYQFR 92
Query: 96 LAGYTKAGDG 105
L G G
Sbjct: 93 LCAVNDVGKG 102
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 30.8 bits (70), Expect = 0.074
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 8/72 (11%)
Query: 36 LKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI 94
L+W P G + Y ++ ++ + + + ++ L P Y
Sbjct: 28 LRWGPPLVDGGSPISCYSVEMSPIEKDEPRE-------VYQGSEVECTVSSLLPGKTYSF 80
Query: 95 HLAGYTKAGDGA 106
L K G G
Sbjct: 81 RLRAANKMGFGP 92
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 30.8 bits (70), Expect = 0.075
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 6/91 (6%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLPYISD 75
Q L + + LKW P++ + GY ++Y + P +
Sbjct: 8 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPV---- 63
Query: 76 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGA 106
+ L + + G AG
Sbjct: 64 -ERCGFTVKDLPTGARILFRVVGVNIAGRSE 93
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 30.4 bits (69), Expect = 0.10
Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 4/78 (5%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
VP LE + L W + N + + I+Y+ +
Sbjct: 16 VPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYE----DAMHKPGLWHHQTEVS 71
Query: 77 TTTSAKLAGLEPSTKYRI 94
T + L P Y
Sbjct: 72 GTQTTAQLNLSPYVNYSF 89
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 30.4 bits (67), Expect = 0.22
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 7/100 (7%)
Query: 8 WLTLNLEALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLM--GYKIKYQSVKGTKVGP 65
+ + E L S F++ P+Q + Y + Y+ + +
Sbjct: 299 EIKFDTEIQAFLLPPVFNIRSLSDS-FHIYIGAPKQSGNTPVIQDYPLIYE-IIFWENTS 356
Query: 66 LLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
ER T + L+P T Y + +T
Sbjct: 357 NAER---KIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKL 393
Score = 26.1 bits (56), Expect = 5.7
Identities = 13/116 (11%), Positives = 25/116 (21%), Gaps = 11/116 (9%)
Query: 35 YLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI 94
K +G+ Y + + + K+ L P T Y +
Sbjct: 127 GTKDSVMWALDGLSFTYSLVIWKNSSGV--------EERIENIYSRHKIYKLSPETTYCL 178
Query: 95 HLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGTENGYGAFKVIWEPNPE 150
+ + T P + S Y + W+
Sbjct: 179 KVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNY---VLKWDYTYA 231
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 29.5 bits (66), Expect = 0.22
Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 7/92 (7%)
Query: 17 VPGT-VQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTK----VGPLLERLP 71
P E + W + + Y+++Y G + ++
Sbjct: 15 APNPPSIREELCTASHDTITVHW-ISDDEFSIS-SYELQYTIFTGQANFISLYNSVDSWM 72
Query: 72 YISDPTTTSAKLAGLEPSTKYRIHLAGYTKAG 103
+ + + GL+ T+Y + +AG
Sbjct: 73 IVPNIKQNHYTVHGLQSGTRYIFIVKAINQAG 104
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated
oncogenes (CDON)binding...; fibronectin type III, FN3;
NMR {Mus musculus} SCOP: b.1.2.1
Length = 121
Score = 29.6 bits (67), Expect = 0.23
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKV-GPLLERLPYIS 74
P ++ Y+ W P G + ++++Y+ +K +P
Sbjct: 17 PPEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIP--- 72
Query: 75 DPTTTSAKLAGLEPSTKYR 93
P+ S ++ GLE Y+
Sbjct: 73 -PSRLSVEITGLEKGISYK 90
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 29.2 bits (66), Expect = 0.24
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 6/93 (6%)
Query: 14 EALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLPY 72
+ L + + ++W P+ L GY ++Y + L
Sbjct: 4 GSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLI- 62
Query: 73 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
T + GL K + + AG
Sbjct: 63 ----DKTKFTITGLPTDAKIFVRVKAVNAAGAS 91
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 29.2 bits (66), Expect = 0.26
Identities = 14/78 (17%), Positives = 20/78 (25%), Gaps = 9/78 (11%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLPYISD 75
PG L LKW KPE G + Y ++ +
Sbjct: 13 PPGKPVPLNI---TRHTVTLKWAKPEYTGGFKITSYIVEKRD-LPNGRWLKANFSN---- 64
Query: 76 PTTTSAKLAGLEPSTKYR 93
++GL Y
Sbjct: 65 ILENEFTVSGLTEDAAYE 82
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 30.2 bits (67), Expect = 0.26
Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 10/75 (13%)
Query: 22 QSLEAIPLGSSAFYLKWVKPEQPNGVL-MGYKIKYQSVKGTKVGPLLERLPYISDPTTTS 80
L S LKW P P Y+I+ + T V + +
Sbjct: 242 VYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLV---------TATVENET 292
Query: 81 AKLAGLEPSTKYRIH 95
L + +
Sbjct: 293 YTLKTTNETRQLCFV 307
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 29.7 bits (66), Expect = 0.33
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 31 SSAFYLKWVKP-EQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS 89
S L+W+ P E P + Y++ + +G +E T L+ L
Sbjct: 136 SGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVE-----ILEGRTECVLSNLRGR 190
Query: 90 TKYRIHL 96
T+Y +
Sbjct: 191 TRYTFAV 197
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 29.4 bits (65), Expect = 0.39
Identities = 9/72 (12%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
Query: 23 SLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAK 82
SL+ + + + + W +++++ + E
Sbjct: 111 SLQVVHVETHRCNISWEIS--QASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWIC 168
Query: 83 LAGLEPSTKYRI 94
L L P T+Y
Sbjct: 169 LETLTPDTQYEF 180
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 28.5 bits (64), Expect = 0.46
Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNG-VLMGYKIKYQSVKGTKVGPLLERLPYISD 75
PG Q ++ + L W P+ + GY I+ K E I
Sbjct: 17 RPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSM------EWFTVIEH 70
Query: 76 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
TSA + L +Y + G
Sbjct: 71 YHRTSATITELVIGNEYYFRVFSENMCGLS 100
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 29.0 bits (64), Expect = 0.58
Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 30 GSSAFYLKWVKPEQPNGVL--MGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLE 87
G++ F + + + + + + Y+ K + T + L+
Sbjct: 126 GANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDEN-----KWTHVNLSSTKLTLLQRKLQ 180
Query: 88 PSTKYRI 94
P+ Y I
Sbjct: 181 PAAMYEI 187
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 28.7 bits (63), Expect = 0.72
Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 26/93 (27%)
Query: 3 LSPPLWLTLNLEALVPGTVQSLEAIPLGSSAFYLKWVKPEQP-NGVLMGYKIKYQSVKGT 61
++PPL +T +E + ++W KP Y++K + +
Sbjct: 221 INPPLNVTAEIE----------------GTRMSIQWEKPVSAFPIHCFDYEVKIHNTRNG 264
Query: 62 KVGPLLERLPYISDPTTTSAKLAGLEPSTKYRI 94
+ + T+A ++ ++ +KY +
Sbjct: 265 YL---------QIEKLMTNAFISIIDDLSKYDV 288
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 28.5 bits (63), Expect = 0.72
Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 6/91 (6%)
Query: 18 PGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMG---YKIKYQSVKGTKVGPLLERLPYIS 74
P +L S L W P P+ L Y + S
Sbjct: 98 PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPAD---FRIYNVTY 154
Query: 75 DPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ + L+ YR + + +A +
Sbjct: 155 LEPSLRIAASTLKSGISYRARVRAWAQAYNT 185
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 28.6 bits (63), Expect = 0.74
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 31 SSAFYLKWVKP-EQPNGVLMGYKIKYQ---SVKGTKVGPLLERLPYISDPTTTSAKLAGL 86
S + + W E P ++ K++Y+ +G R D + S
Sbjct: 112 SGQYQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEF 171
Query: 87 EPSTKYRI 94
+ Y +
Sbjct: 172 RKDSSYEL 179
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 28.6 bits (64), Expect = 0.85
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 14/93 (15%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGV-LMGYKIKYQSVKG---TKVGPLLERLPY 72
VP + ++ + + L W +P G + Y ++ + +V
Sbjct: 198 VPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRV--------- 248
Query: 73 ISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
T + L T Y+ + K G
Sbjct: 249 -GQARETRYTVINLFGKTSYQFRVIAENKFGLS 280
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 28.5 bits (63), Expect = 0.92
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 15/79 (18%)
Query: 31 SSAFYLKWVKPE----QPNGVLMGYKIKYQSVKGT--KVGPLLERLPYISDPTTTSAKLA 84
++KW P + + Y+I+ + K ++ T K+
Sbjct: 120 KPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEI---------HFAGQQTEFKIL 170
Query: 85 GLEPSTKYRIHLAGYTKAG 103
L P KY + + G
Sbjct: 171 SLHPGQKYLVQVRCKPDHG 189
>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD;
1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A*
2xn0_A*
Length = 732
Score = 28.5 bits (63), Expect = 0.97
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 69 RLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGD 104
+ + P T KLAGL+P +Y+ GD
Sbjct: 670 NVMAHAQPYCTKTKLAGLDPDKRYKNLETDEVFGGD 705
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 28.3 bits (62), Expect = 1.0
Identities = 16/101 (15%), Positives = 24/101 (23%), Gaps = 3/101 (2%)
Query: 34 FYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYR 93
L+W PE GV + Y ++Y G K I+ T + +Y
Sbjct: 24 NVLQWTPPEGLQGVKVTYTVQYFI-YGQKKWLNKSECRNINR-TYCDLSAETSDYEHQYY 81
Query: 94 IHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGT 134
+ G P L
Sbjct: 82 ARVRAIWGTKCSKWAESGRFYP-FLETQIGPPEVALTTDEK 121
Score = 25.2 bits (54), Expect = 9.4
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 49 MGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+ Y + + K + + T + L LEP+T Y +H+ +
Sbjct: 151 LKYNVSVLNTKSNRT--------WSQCVTNHTLVLTWLEPNTLYCVHVESFVPGPPR 199
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 28.0 bits (61), Expect = 1.2
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 39 VKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAG 98
+ + + Y+I Y G P+ E + ++++A ++GL+P Y I +
Sbjct: 122 ISWDASYYGVSYYRITYGETGGN--SPVQE---FTVPYSSSTATISGLKPGVDYTITVYA 176
Query: 99 YTKAGDG 105
Y+
Sbjct: 177 YSDYYGS 183
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein
structure initiati northeast structural genomics
consortium, hydrolase; 2.70A {Lactobacillus brevis}
Length = 745
Score = 28.1 bits (62), Expect = 1.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 82 KLAGLEPSTKYRIHLAGYTKAGD 104
GL P+ +Y+I+ T GD
Sbjct: 683 YFKGLRPNQRYQINDDPSTYYGD 705
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 27.4 bits (61), Expect = 1.4
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 7/77 (9%)
Query: 31 SSAFYLKWVKPEQPNGV-LMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPS 89
S +F + W P+ G + Y ++ + I T L P
Sbjct: 32 SHSFKITWDPPKDNGGATINKYVVEMAEGSNG------NKWEMIYSGATREHLCDRLNPG 85
Query: 90 TKYRIHLAGYTKAGDGA 106
YR+ + + G A
Sbjct: 86 CFYRLRVYCISDGGQSA 102
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 27.0 bits (60), Expect = 1.4
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 11/91 (12%)
Query: 17 VPGTVQSLEAIPL-GSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISD 75
P L A+ + L W G Y +K + G + ++
Sbjct: 4 APAFPTGLSAVLDSSGNTANLTW---NAAPGAN-SYNVKRSTKSGGPYTTI------ATN 53
Query: 76 PTTTSAKLAGLEPSTKYRIHLAGYTKAGDGA 106
T+T+ G+ TKY ++ + +
Sbjct: 54 ITSTNYTDTGVATGTKYYYVVSAVSNGVETL 84
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 27.8 bits (61), Expect = 1.5
Identities = 10/103 (9%), Positives = 24/103 (23%), Gaps = 7/103 (6%)
Query: 34 FYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKL--AGLEPSTK 91
L+W G Y ++Y+ + + S L +
Sbjct: 23 NILQWQPGRALTGNSSVYFVQYKIYGQRQW----KNKEDCWGTQELSCDLTSETSDIQEP 78
Query: 92 YRIHLAGYTKAGDGADYFIEHRTRGTDNVAPGKPNFKLVRSGT 134
Y + + ++ + R P + +
Sbjct: 79 YYGRVRAASAGSYS-EWSMTPRFTPWWETKIDPPVMNITQVNG 120
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 27.5 bits (60), Expect = 1.8
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 31 SSAFYLKWVKPEQPN----GVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGL 86
+ ++W P + +++ Y+++Y+ V TK + TTS + L
Sbjct: 150 HADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKW-------KMMDPILTTSVPVYSL 202
Query: 87 EPSTKYRI 94
+ +Y +
Sbjct: 203 KVDKEYEV 210
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 27.6 bits (60), Expect = 2.1
Identities = 13/114 (11%), Positives = 28/114 (24%), Gaps = 13/114 (11%)
Query: 41 PEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYT 100
+G+ Y + + + + K+ L P T Y + +
Sbjct: 129 MWALDGLSFTYSLVIWKNSSGVEERI--------ENIYSRHKIYKLSPETTYCLKVKAAL 180
Query: 101 KAGDGADYFIE-HRTRGTDNVAPGKPNFKLVRSGTENGYGAFKVIWEPNPERPG 153
+ H + T P V +N + + W+
Sbjct: 181 LTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQN----YVLKWDYTYANMT 230
>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL;
1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A*
Length = 720
Score = 27.3 bits (60), Expect = 2.3
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 82 KLAGLEPSTKYRIHLAGYTKAGD 104
+L GL+P Y +G +G
Sbjct: 672 RLRGLKPDAVYLEEQSGRQYSGA 694
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 26.2 bits (58), Expect = 2.9
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYISDP 76
+PG + + ++ L W Y I+ S + + +
Sbjct: 15 LPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVA-----NHV 69
Query: 77 TTTSAKLAGLEPSTKYR 93
TT + GL P+T Y
Sbjct: 70 KTTLYTVRGLRPNTIYL 86
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 26.6 bits (58), Expect = 3.3
Identities = 15/112 (13%), Positives = 34/112 (30%), Gaps = 19/112 (16%)
Query: 4 SPPLWLTLNLEALVPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMG----------YKI 53
S + +T + ++ L +++++ P+ N Y +
Sbjct: 79 SDWVQITFSPVDDTIIGPPGMQVEVLADC-LHMRFLAPKIENEYETWTMKNVYNSWTYNV 137
Query: 54 KYQSVKGTKVGPLLERLPYISDPTTTSAKLAGLEPSTKYRIHLAGYTKAGDG 105
+Y + + P L LEP T Y + + G+ +
Sbjct: 138 QYWKQGTDEK--------FQITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNK 181
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate
dehydrogenase phosphatase 1, catalytic subunit, PDP1C,
hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Length = 467
Score = 26.7 bits (58), Expect = 3.6
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 17 VPGTVQSLEAIPLGSSAFYLKWVKPEQPNGVLMGYKIKYQSVKGTKVGPLLERLPYIS-D 75
+ G + A KW Q + G + + P PY++ +
Sbjct: 272 LLGLLMPFRAFG----DVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAE 327
Query: 76 PTTTSAKL 83
P T +L
Sbjct: 328 PEVTYHRL 335
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {}
SCOP: k.22.1.1
Length = 37
Score = 23.7 bits (52), Expect = 6.6
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 104 DGADYFIEHRTRGT 117
+G Y+ H T+ +
Sbjct: 15 NGKTYYYNHNTKTS 28
>1jc9_A Techylectin-5A; fibrinogen related, sugar binding protein; HET:
NAG; 2.01A {Tachypleus tridentatus} SCOP: d.171.1.1
Length = 269
Score = 25.4 bits (56), Expect = 8.3
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 7/36 (19%)
Query: 89 STKYRIHLAGYTKAGDGADYFIEHR-----TRGTDN 119
Y +H+ Y+ GD + F H T D+
Sbjct: 166 DYLYCLHIGNYS--GDAGNSFGRHNGHNFSTIDKDH 199
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 25.6 bits (56), Expect = 9.0
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 89 STKYRIHLAGYTK--AGDG 105
+ KYR+ A + AGD
Sbjct: 271 ADKYRLTYAYFAGGDAGDA 289
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Length = 409
Score = 25.6 bits (56), Expect = 9.1
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 89 STKYRIHLAGYTK--AGDGADYF 109
KYR+ A + AGD D F
Sbjct: 271 EDKYRLTYAYFIGGEAGDAFDGF 293
>2j5z_A Ficolin-3; hydroxylation, alternative splicing, lectin, collagen,
immunology, glycoprotein; HET: GAL; 1.73A {Homo sapiens}
PDB: 2j60_A* 2j64_A
Length = 221
Score = 25.3 bits (56), Expect = 9.7
Identities = 5/22 (22%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 89 STKYRIHLAGYTK--AGDGADY 108
Y++ L +++ AGD
Sbjct: 126 VDHYQLALGKFSEGTAGDSLSL 147
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.137 0.423
Gapped
Lambda K H
0.267 0.0473 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,514,289
Number of extensions: 140590
Number of successful extensions: 600
Number of sequences better than 10.0: 1
Number of HSP's gapped: 466
Number of HSP's successfully gapped: 195
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.8 bits)